Citrus Sinensis ID: 013898

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430----
Protein Sequence
MGKETAELLVKLVGFKNFVRQNPKSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSYKDKANHLDFLPGFEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFTKPVGDRPTIFIEIIQRVGCMLKDEEGKTYQKGGCGGFGKGNFSELFKSIEEYEKTLGAKPVAETAAA
Secondary Structure (PSIPRED)
cccccHHHHHEEEcccccccccccccccccccEEEEEEEcccHHHHHHHHHHHccccEEEEccccccccEEEEEEEEcccEEEEEEcccccccccccccccccccccccccHHHHHHHHHccccEEEEEEEEccHHHHHHHHHHcccccccccEEccccEEEEEEEEcccEEEEEEEcccccccccccccccccccccccccccccEEEEEEEccccccHHHHHHHHHHcccccccEEcccccccccccEEEEEEEcccccEEEEccccccccccccHHHHHHHHcccccccEEEEccccHHHHHHHHHHHcccccccccccccccHHHHHHHHHcccccHHHHHHHHHcccEEEcccccEEEEEEccccccccccEEEEEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEccccccccccccccccccccccEEEEEEccHHHHHHHHHHHccccHHHHcccccccccEEEEEEEcccEEEEEEccccccccccccccccHccccccccHHHHHHHHHccccHEEEEEEEccHHHHHHHHHHcccEEEccccccccEEEEEEEEEcccEEEEEEEEccccccccccccccccccccccccccccEEEEEcccccccHHHHHHHHHHHHcccEEEEEcHHHcccHHHHHHEEEEEccccEEEEcccccccccccHHHHHHHHHHccccccEEEEEEcHHHHHHHHHHHHccccccEEccccccHHHHHHHHHHHccccccccHHHHHHcccEEEcccccEEEEEEcccccccccEEEEEEEEccccccccccHHHEEEEcccccHHHHHHHHHHHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
MGKETAELLVKLVGFKnfvrqnpksdrfrvnrfhhvefwctdatntARRFSwglgmpivaksdlstgntvhasyllrsgdlrfvftapyspsisdaadagnssaslptfdhaACRSFAASHGLAARSIAVEvedadvafntsvahgakpssppvilDNLAVIAEVQLYGDVVLRYVSYkdkanhldflpgfeptdeissfpldygirrldhavgnvpelaPAVAYVKSFTGfhefaeftaedvgtsesglnsvvlanndemvllpmnepvfgtkrKSQIQTYLEhnegagvqhLALVSEDIFRTLREMRKrsgvggfefmpsppptyyknlknragdvltdeQIKQCEELgvlvdrddqgtllqiftkpvgdrptIFIEIIQRVGCmlkdeegktyqkggcggfgkgnFSELFKSIEEYEKTlgakpvaetaaa
Flexible Loop (DISEMBL)
MGKETAELLVKLVgfknfvrqnpksdrfrvnRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVahgakpssppVILDNLAVIAEVQLYGDVVLRYVSYKDKANHLDFLPGFEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEftaedvgtseSGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHnegagvqhlaLVSEDIFRTLREMRKRsgvggfefmpspppTYYKNLKNRAGDVLTDEQIKQCEElgvlvdrddqGTLLQiftkpvgdrptiFIEIIQRVGCMLKDEEGKTYQKGGCGGFGKGNFSELFKSIEEyektlgakpvaetaaa
Low Complexity Region (SEG)
MGKETAELLVKLVGFKNFVRQNPKSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPsisdaadagnssasLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSYKDKANHLDFLPGFEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFTKPVGDRPTIFIEIIQRVGCMLKDEEgktyqkggcggfgkgNFSELFKSIEEYEKTLGAKPVAETAAA
Disordered region (IsUnstruct)
******ELLVKLVGFKNFVRQNPKSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPY******************TFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHG*****PPVILDNLAVIAEVQLYGDVVLRYVSYKDKANHLDFLPGFEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLR******************************DVLTDEQIKQCEELGVLVDRDDQGTLLQIFTKPVGDRPTIFIEIIQRVGCMLKDEEGKTYQKGGCGGFGKGNFSELFKSIEE****************
Disordered Region (DISOPRED)
***********LVGFKNFV*****SDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAP********************FDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSYKDKANHLDFLPGFEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNE************TYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFTKPVGDRPTIFIEIIQRVGCMLKDEEGKTYQKGGCGGFGKGNFSELFKSIEEYE**************
Disordered Region (DISEMBL)
MGKETAELLVKLVGFKNFVRQNPKSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSYKDKANHLDFLPGFEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFTKPVGDRPTIFIEIIQRVGCMLKDEEGKTYQKGGCGGFGKGNFSELFKSIEEYEKTLGAKPVAETAAA
Disordered Region (DISPRO)
*********VKLVGFKNFVRQNPKSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSP*************SLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSYKDKANHLDFLPGFEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFTKPVGDRPTIFIEIIQRVGCMLKDEEGKTYQKGGCGGFGKGNFSELFKSIEEYEKTLG**********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGKETAELLVKLVGFKNFVRQNPKSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSYKDKANHLDFLPGFEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFTKPVGDRPTIFIEIIQRVGCMLKDEEGKTYQKGGCGGFGKGNFSELFKSIEEYEKTLGAKPVAETAAA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	434	2.2.26 [Sep-21-2011]
P93836	445	4-hydroxyphenylpyruvate d	yes	no	0.958	0.934	0.779	0.0
O23920	442	4-hydroxyphenylpyruvate d	N/A	no	0.963	0.945	0.769	0.0
Q9ARF9	436	4-hydroxyphenylpyruvate d	N/A	no	0.963	0.958	0.751	1e-177
O48604	434	4-hydroxyphenylpyruvate d	N/A	no	0.930	0.930	0.641	1e-145
Q5EA20	393	4-hydroxyphenylpyruvate d	yes	no	0.824	0.910	0.363	4e-55
P32754	393	4-hydroxyphenylpyruvate d	yes	no	0.843	0.931	0.355	7e-55
Q872T7	412	4-hydroxyphenylpyruvate d	N/A	no	0.875	0.922	0.339	1e-53
P32755	393	4-hydroxyphenylpyruvate d	yes	no	0.841	0.928	0.344	5e-53
Q9S2F4	381	4-hydroxyphenylpyruvate d	yes	no	0.831	0.947	0.362	2e-52
P49429	393	4-hydroxyphenylpyruvate d	yes	no	0.834	0.921	0.349	2e-52

>sp|P93836|HPPD_ARATH 4-hydroxyphenylpyruvate dioxygenase OS=Arabidopsis thaliana GN=HPD PE=1 SV=2

 Score =  673 bits (1737), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/417 (77%), Positives = 368/417 (88%), Gaps = 1/417 (0%)

Query: 11  KLVGFKNFVRQNPKSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTV 70
           KLVGF  FVR+NPKSD+F+V RFHH+EFWC DATN ARRFSWGLGM   AKSDLSTGN V
Sbjct: 25  KLVGFSKFVRKNPKSDKFKVKRFHHIEFWCGDATNVARRFSWGLGMRFSAKSDLSTGNMV 84

Query: 71  HASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHAACRSFAASHGLAARSIAV 130
           HASYLL SGDLRF+FTAPYSPS+S       ++AS+P+FDH +CRSF +SHGL  R++A+
Sbjct: 85  HASYLLTSGDLRFLFTAPYSPSLSAGEIKPTTTASIPSFDHGSCRSFFSSHGLGVRAVAI 144

Query: 131 EVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSYK-DKANHLDFLP 189
           EVEDA+ AF+ SVA+GA PSSPP++L+    IAEV+LYGDVVLRYVSYK +     +FLP
Sbjct: 145 EVEDAESAFSISVANGAIPSSPPIVLNEAVTIAEVKLYGDVVLRYVSYKAEDTEKSEFLP 204

Query: 190 GFEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESG 249
           GFE  ++ SSFPLDYGIRRLDHAVGNVPEL PA+ YV  FTGFH+FAEFTA+DVGT+ESG
Sbjct: 205 GFERVEDASSFPLDYGIRRLDHAVGNVPELGPALTYVAGFTGFHQFAEFTADDVGTAESG 264

Query: 250 LNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMR 309
           LNS VLA+NDEMVLLP+NEPV GTKRKSQIQTYLEHNEGAG+QHLAL+SEDIFRTLREMR
Sbjct: 265 LNSAVLASNDEMVLLPINEPVHGTKRKSQIQTYLEHNEGAGLQHLALMSEDIFRTLREMR 324

Query: 310 KRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFTKP 369
           KRS +GGF+FMPSPPPTYY+NLK R GDVL+D+QIK+CEELG+LVDRDDQGTLLQIFTKP
Sbjct: 325 KRSSIGGFDFMPSPPPTYYQNLKKRVGDVLSDDQIKECEELGILVDRDDQGTLLQIFTKP 384

Query: 370 VGDRPTIFIEIIQRVGCMLKDEEGKTYQKGGCGGFGKGNFSELFKSIEEYEKTLGAK 426
           +GDRPTIFIEIIQRVGCM+KDEEGK YQ GGCGGFGKGNFSELFKSIEEYEKTL AK
Sbjct: 385 LGDRPTIFIEIIQRVGCMMKDEEGKAYQSGGCGGFGKGNFSELFKSIEEYEKTLEAK 441

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 3EC: .EC: 1EC: 1EC: .EC: 2EC: 7

>sp|O23920|HPPD_DAUCA 4-hydroxyphenylpyruvate dioxygenase OS=Daucus carota PE=2 SV=1

 Score =  640 bits (1650), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/425 (76%), Positives = 366/425 (86%), Gaps = 7/425 (1%)

Query: 11  KLVGFKNFVRQNPKSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTV 70
           KLVGF NFVR NPKSD F V RFHH+EFWC DATNT+RRFSWGLGMP+VAKSDLSTGN+V
Sbjct: 24  KLVGFNNFVRANPKSDHFAVKRFHHIEFWCGDATNTSRRFSWGLGMPLVAKSDLSTGNSV 83

Query: 71  HASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHAACRSFAASHGLAARSIAV 130
           HASYL+RS +L FVFTAPYSPS + ++     SA++P+F  +   SFAA HGLA R+IA+
Sbjct: 84  HASYLVRSANLSFVFTAPYSPSTTTSS----GSAAIPSFSASGFHSFAAKHGLAVRAIAL 139

Query: 131 EVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSYKDKANHLDFLPG 190
           EV D   AF  SVA GA+P+S PV LD+ A +AEV+LYGDVVLR+VS+  +     FLPG
Sbjct: 140 EVADVAAAFEASVARGARPASAPVELDDQAWLAEVELYGDVVLRFVSFGREEGL--FLPG 197

Query: 191 FEPTDEISSFP-LDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESG 249
           FE  +  +SFP LDYGIRRLDHAVGNV EL P V Y+K FTGFHEFAEFTAEDVGT ESG
Sbjct: 198 FEAVEGTASFPDLDYGIRRLDHAVGNVTELGPVVEYIKGFTGFHEFAEFTAEDVGTLESG 257

Query: 250 LNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMR 309
           LNSVVLANN+EMVLLP+NEPV+GTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMR
Sbjct: 258 LNSVVLANNEEMVLLPLNEPVYGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMR 317

Query: 310 KRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFTKP 369
           KRS +GGFEFMPSPPPTYYKNLKNR GDVL+DEQIK+CE+LG+LVDRDDQGTLLQIFTKP
Sbjct: 318 KRSCLGGFEFMPSPPPTYYKNLKNRVGDVLSDEQIKECEDLGILVDRDDQGTLLQIFTKP 377

Query: 370 VGDRPTIFIEIIQRVGCMLKDEEGKTYQKGGCGGFGKGNFSELFKSIEEYEKTLGAKPVA 429
           VGDRPT+FIEIIQRVGCMLKD+ G+ YQKGGCGGFGKGNFSELFKSIEEYEKTL AK + 
Sbjct: 378 VGDRPTLFIEIIQRVGCMLKDDAGQMYQKGGCGGFGKGNFSELFKSIEEYEKTLEAKQIT 437

Query: 430 ETAAA 434
            +AAA
Sbjct: 438 GSAAA 442

Daucus carota (taxid: 4039)

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 1

EC: .

EC: 2

EC: 7

>sp|Q9ARF9|HPPD_SOLSC 4-hydroxyphenylpyruvate dioxygenase OS=Solenostemon scutellarioides PE=2 SV=1

 Score =  623 bits (1606), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 320/426 (75%), Positives = 366/426 (85%), Gaps = 8/426 (1%)

Query: 11  KLVGFKNFVRQNPKSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTV 70
           KLVG KNFVR NP SD F V+RFHHVEFWC DATNT+RRFSWGLGMP+VAKSDLSTGN+ 
Sbjct: 17  KLVGHKNFVRSNPMSDHFPVHRFHHVEFWCGDATNTSRRFSWGLGMPLVAKSDLSTGNSA 76

Query: 71  HASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHAACRSFAASHGLAARSIAV 130
           HASYLLRSG+L FVFTAPYSPS+++      SSAS+PTF  +  R+F +SHGLA R++A+
Sbjct: 77  HASYLLRSGELSFVFTAPYSPSLAEP-----SSASIPTFSFSDHRAFTSSHGLAVRAVAI 131

Query: 131 EVEDADVAFNTSVAHGAKPSSPPVIL-DNLAVIAEVQLYGDVVLRYVSYKDKANHLDFLP 189
           +V+ A  A++ +V+ GAKP SPPV+L D    IAEV LYGD VLR+VS    A+   FLP
Sbjct: 132 QVDSASSAYSAAVSRGAKPVSPPVVLADCETAIAEVHLYGDTVLRFVSCGSGADGW-FLP 190

Query: 190 GFEPT-DEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSES 248
           GFE   D +S   LDYGIRRLDHAVGNVP+L P V Y+K FTGFHEFAEFTAEDVGT+ES
Sbjct: 191 GFEVVGDGVSCQELDYGIRRLDHAVGNVPKLEPVVDYLKKFTGFHEFAEFTAEDVGTAES 250

Query: 249 GLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREM 308
           GLNSVVLANN+E VL P+NEPV+GTKRKSQIQTYL+HNEGAGVQHLAL++EDIFRTLREM
Sbjct: 251 GLNSVVLANNNENVLFPLNEPVYGTKRKSQIQTYLDHNEGAGVQHLALITEDIFRTLREM 310

Query: 309 RKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFTK 368
           RKRS VGGFEFMPSPPPTYY+NLK+RAGDVL+DEQI++CE+LG+L+DRDDQGTLLQIFTK
Sbjct: 311 RKRSEVGGFEFMPSPPPTYYRNLKSRAGDVLSDEQIEECEKLGILIDRDDQGTLLQIFTK 370

Query: 369 PVGDRPTIFIEIIQRVGCMLKDEEGKTYQKGGCGGFGKGNFSELFKSIEEYEKTLGAKPV 428
           PVGDRPT+FIEIIQRVGCM+KDEEGK YQKGGCGGFGKGNFSELFKSIEEYEK L +K V
Sbjct: 371 PVGDRPTLFIEIIQRVGCMMKDEEGKMYQKGGCGGFGKGNFSELFKSIEEYEKMLESKLV 430

Query: 429 AETAAA 434
            +TA A
Sbjct: 431 TKTAMA 436

Solenostemon scutellarioides (taxid: 4142)

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 1

EC: .

EC: 2

EC: 7

>sp|O48604|HPPD_HORVU 4-hydroxyphenylpyruvate dioxygenase OS=Hordeum vulgare PE=2 SV=1

 Score =  513 bits (1322), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 265/413 (64%), Positives = 319/413 (77%), Gaps = 9/413 (2%)

Query: 17  NFVRQNPKSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLL 76
             VR NP+SDRF    FHHVEFWC DA + A RF++ LG P+ A+SDLSTGN+ HAS LL
Sbjct: 26  RMVRFNPRSDRFHTLSFHHVEFWCADAASAAGRFAFALGAPLAARSDLSTGNSAHASQLL 85

Query: 77  RSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHAACRSFAASHGLAARSIAVEVEDAD 136
           RSG L F+FTAPY    ++  DA  ++ASLP+F   A R F+A HG+A RS+A+ V DA 
Sbjct: 86  RSGSLAFLFTAPY----ANGCDA--ATASLPSFSADAARRFSADHGIAVRSVALRVADAA 139

Query: 137 VAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSYKDKANHLDFLPGFEPTDE 196
            AF  S   GA+P+  PV L      AEV+LYGDVVLR+VS+ D  + + FLPGFE    
Sbjct: 140 EAFRASRRRGARPAFAPVDLGRGFAFAEVELYGDVVLRFVSHPDGTD-VPFLPGFEGVTN 198

Query: 197 ISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLA 256
             +  +DYG+ R DH VGNVPELAPA AY+  FTGFHEFAEFTAEDVGT+ESGLNSVVLA
Sbjct: 199 PDA--VDYGLTRFDHVVGNVPELAPAAAYIAGFTGFHEFAEFTAEDVGTTESGLNSVVLA 256

Query: 257 NNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGG 316
           NN E VLLP+NEPV GTKR+SQIQT+LEH+ G GVQH+A+ S D+ RTLR+MR RS +GG
Sbjct: 257 NNSEGVLLPLNEPVHGTKRRSQIQTFLEHHGGPGVQHIAVASSDVLRTLRKMRARSAMGG 316

Query: 317 FEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFTKPVGDRPTI 376
           F+F+P P P YY+ ++  AGDVL++ QIK+C+ELGVLVDRDDQG LLQIFTKPVGDRPT+
Sbjct: 317 FDFLPPPLPKYYEGVRRLAGDVLSEAQIKECQELGVLVDRDDQGVLLQIFTKPVGDRPTL 376

Query: 377 FIEIIQRVGCMLKDEEGKTYQKGGCGGFGKGNFSELFKSIEEYEKTLGAKPVA 429
           F+E+IQR+GCM KDE G+ YQKGGCGGFGKGNFSELFKSIE+YEK+L AK  A
Sbjct: 377 FLEMIQRIGCMEKDERGEEYQKGGCGGFGKGNFSELFKSIEDYEKSLEAKQSA 429

Hordeum vulgare (taxid: 4513)

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 1

EC: .

EC: 2

EC: 7

>sp|Q5EA20|HPPD_BOVIN 4-hydroxyphenylpyruvate dioxygenase OS=Bos taurus GN=HPD PE=2 SV=3

 Score =  215 bits (548), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 150/413 (36%), Positives = 208/413 (50%), Gaps = 55/413 (13%)

Query: 24  KSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRF 83
           K +R R   FH V FW  +A   A  +   LG   +A   L TG+    S++++ G + F
Sbjct: 10  KPERGRFLHFHSVTFWVGNAKQAASYYCSKLGFEPLAYKGLETGSREVVSHVVKQGQIVF 69

Query: 84  VFTAPYSPSISDAADAGNSSASLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSV 143
           VF++  +P   +  D                      HG   + IA EVED D     + 
Sbjct: 70  VFSSALNPWNKEMGD------------------HLVKHGDGVKDIAFEVEDCDYIVQKAR 111

Query: 144 AHGAKPSSPPVI-LDNLAVI--AEVQLYGDVVLRYVSYKDKANHL-DFLPGFEP----TD 195
             GAK    P +  D L  +  A +Q YGD     V   +K N+   FLPGFE       
Sbjct: 112 ERGAKIVREPWVEQDKLGKVKFAVLQTYGDTTHTLV---EKMNYTGRFLPGFEAPPFMDP 168

Query: 196 EISSFPLDYGIRRLDHAVGNVP--ELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSV 253
           ++S  P    +  +DH VGN P  E+  A  +      FH F       V T  S L SV
Sbjct: 169 QLSKLP-SCSLEIIDHIVGNQPDQEMVSASEWYLKNLQFHRFWSVDDTQVHTEYSSLRSV 227

Query: 254 VLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSG 313
           V+AN +E + +P+NEP  G K+KSQIQ Y+++N GAGVQH+AL ++DI   +R +R+R  
Sbjct: 228 VVANYEESIKMPINEPAPG-KKKSQIQEYVDYNGGAGVQHIALKTKDIITAIRHLRER-- 284

Query: 314 VGGFEFMPSPPPTYYKNLKNR--AGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFTKPVG 371
             G EF+ + P TYYK L+ +     +   E I   EEL +LVD D++G LLQIFTKP+ 
Sbjct: 285 --GVEFL-AVPSTYYKQLREKLKMAKIRVKENIDILEELKILVDYDEKGYLLQIFTKPMQ 341

Query: 372 DRPTIFIEIIQRVGCMLKDEEGKTYQKGGCGGFGKGNFSELFKSIEEYEKTLG 424
           DRPT+F+E+IQR            +Q     GFG GNF+ LFK+ EE +   G
Sbjct: 342 DRPTLFLEVIQR----------HNHQ-----GFGAGNFNSLFKAFEEEQDLRG 379

Key enzyme in the degradation of tyrosine.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 1

EC: .

EC: 2

EC: 7

>sp|P32754|HPPD_HUMAN 4-hydroxyphenylpyruvate dioxygenase OS=Homo sapiens GN=HPD PE=1 SV=2

 Score =  214 bits (546), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 149/419 (35%), Positives = 207/419 (49%), Gaps = 53/419 (12%)

Query: 24  KSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRF 83
           K +R R   FH V FW  +A   A  +   +G   +A   L TG+    S++++ G + F
Sbjct: 10  KPERGRFLHFHSVTFWVGNAKQAASFYCSKMGFEPLAYRGLETGSREVVSHVIKQGKIVF 69

Query: 84  VFTAPYSPSISDAADAGNSSASLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSV 143
           V ++  +P   +  D                      HG   + IA EVED D     + 
Sbjct: 70  VLSSALNPWNKEMGD------------------HLVKHGDGVKDIAFEVEDCDYIVQKAR 111

Query: 144 AHGAKPSSPPVI-LDNLAVI--AEVQLYGDVVLRYVSYKDKANHL-DFLPGFEP---TDE 196
             GAK    P +  D    +  A +Q YGD     V   +K N++  FLPG+E     D 
Sbjct: 112 ERGAKIMREPWVEQDKFGKVKFAVLQTYGDTTHTLV---EKMNYIGQFLPGYEAPAFMDP 168

Query: 197 ISSFPLDYGIRRLDHAVGNVP--ELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVV 254
           +        +  +DH VGN P  E+  A  +      FH F       V T  S L S+V
Sbjct: 169 LLPKLPKCSLEMIDHIVGNQPDQEMVSASEWYLKNLQFHRFWSVDDTQVHTEYSSLRSIV 228

Query: 255 LANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGV 314
           +AN +E + +P+NEP  G K+KSQIQ Y+++N GAGVQH+AL +EDI   +R +R+R   
Sbjct: 229 VANYEESIKMPINEPAPG-KKKSQIQEYVDYNGGAGVQHIALKTEDIITAIRHLRER--- 284

Query: 315 GGFEFMPSPPPTYYKNLKNR--AGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFTKPVGD 372
            G EF+ S P TYYK L+ +     +   E I   EEL +LVD D++G LLQIFTKPV D
Sbjct: 285 -GLEFL-SVPSTYYKQLREKLKTAKIKVKENIDALEELKILVDYDEKGYLLQIFTKPVQD 342

Query: 373 RPTIFIEIIQRVGCMLKDEEGKTYQKGGCGGFGKGNFSELFKSIEEYEKTLGAKPVAET 431
           RPT+F+E+IQR            +Q     GFG GNF+ LFK+ EE +   G     ET
Sbjct: 343 RPTLFLEVIQR----------HNHQ-----GFGAGNFNSLFKAFEEEQNLRGNLTNMET 386

Key enzyme in the degradation of tyrosine.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 1

EC: .

EC: 2

EC: 7

>sp|Q872T7|HPPD_NEUCR 4-hydroxyphenylpyruvate dioxygenase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=B23G1.170 PE=3 SV=1

 Score =  210 bits (535), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 145/427 (33%), Positives = 211/427 (49%), Gaps = 47/427 (11%)

Query: 14  GFKNFVRQNPKSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHAS 73
           G  ++  Q+ +   F  N + HV +W  +A   A  ++   G   +A   L TG+   AS
Sbjct: 15  GTPDYALQSSEVSNF--NGYDHVTWWVGNAKQAASYYNTVFGFKTLAYRGLETGSRYFAS 72

Query: 74  YLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHAACRSFAASHGLAARSIAVEVE 133
           Y++ + D+RFVFT+P         +   S A         C      HG A + +A EV+
Sbjct: 73  YVVGNADVRFVFTSPIRSQKCLPEEEPISDADRKLLQE--CHEHLEKHGDAVKDVAFEVD 130

Query: 134 DADVAFNTSVAHGAKPSSPPVILDNL----AVIAEVQLYGDVVLRYVSYKDKANHLDFLP 189
           + D  F+ +VA GA     P  L +        A ++ YGD     +S  D      FLP
Sbjct: 131 NVDGVFHKAVAAGADVVQEPTTLTDKMHGSVRTAVIRTYGDTTHTLISRADYNG--PFLP 188

Query: 190 GFE------PTDEISSFPLDYGIRRLDHAVGN--VPELAPAVAYVKSFTGFHEFAEFTAE 241
           GF        T ++ S PL     R+DH VGN    E+  A A+ +    FH F      
Sbjct: 189 GFRTAAPSSATVQLPSVPL----ARIDHCVGNQDWNEMVSACAFYEQCLSFHRFWSVDDS 244

Query: 242 DVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDI 301
            + T  S LNS+V+A+ + +V +P+NEP  G K+KSQI+ Y+  N GAGVQH+AL++ DI
Sbjct: 245 QICTEFSALNSIVMASENNLVKMPINEPAPG-KKKSQIEEYVVFNSGAGVQHIALLTPDI 303

Query: 302 FRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQ----CEELGVLVDRD 357
             T+  MR R    G EF+ + P TYY  ++ R        ++K+     ++L +L+D D
Sbjct: 304 ISTVSAMRAR----GVEFI-NVPSTYYDTIRQRLKTEKRGWELKEDLDTIQKLNILIDYD 358

Query: 358 DQGTLLQIFTKPVGDRPTIFIEIIQRVGCMLKDEEGKTYQKGGCGGFGKGNFSELFKSIE 417
           + G LLQ+FTKP+ DRPT+FIEIIQR                   GFG GNF  LF++IE
Sbjct: 359 EGGYLLQLFTKPLMDRPTVFIEIIQR---------------NNFEGFGAGNFKSLFEAIE 403

Query: 418 EYEKTLG 424
             +   G
Sbjct: 404 REQAERG 410

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 1

EC: .

EC: 2

EC: 7

>sp|P32755|HPPD_RAT 4-hydroxyphenylpyruvate dioxygenase OS=Rattus norvegicus GN=Hpd PE=1 SV=3

 Score =  209 bits (531), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 144/418 (34%), Positives = 210/418 (50%), Gaps = 53/418 (12%)

Query: 18  FVRQNPKSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLR 77
           +  + PK +R R   FH V FW  +A   A  +   +G   +A   L TG+    S++++
Sbjct: 4   YSNKGPKPERGRFLHFHSVTFWVGNAKQAASFYCNKMGFEPLAYKGLETGSREVVSHVIK 63

Query: 78  SGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHAACRSFAASHGLAARSIAVEVEDADV 137
            G + FV  +  +P   +  D                      HG   + IA EVED + 
Sbjct: 64  QGKIVFVLCSALNPWNKEMGD------------------HLVKHGDGVKDIAFEVEDCEH 105

Query: 138 AFNTSVAHGAKPSSPPVILDNL---AVIAEVQLYGDVVLRYVSYKDKANHL-DFLPGFE- 192
               +   GAK    P + ++       A +Q YGD     V   +K N+   FLPGFE 
Sbjct: 106 IVQKARERGAKIVREPWVEEDKFGKVKFAVLQTYGDTTHTLV---EKINYTGRFLPGFEA 162

Query: 193 PTDEISSFPL--DYGIRRLDHAVGNVP--ELAPAVAYVKSFTGFHEFAEFTAEDVGTSES 248
           PT + +  P      +  +DH VGN P  E+  A  +      FH F       V T  S
Sbjct: 163 PTYKDTLLPKLPSCNLEIIDHIVGNQPDQEMESASEWYLKNLQFHRFWSVDDTQVHTEYS 222

Query: 249 GLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREM 308
            L S+V+AN +E + +P+NEP  G ++KSQIQ Y+++N GAGVQH+AL +EDI  T+R +
Sbjct: 223 SLRSIVVANYEESIKMPINEPAPG-RKKSQIQEYVDYNGGAGVQHIALRTEDIITTIRHL 281

Query: 309 RKRSGVGGFEFMPSPPPTYYKNLKN--RAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIF 366
           R+R    G EF+ + P +YY+ L+   +   +   E +   EEL +LVD D++G LLQIF
Sbjct: 282 RER----GMEFL-AVPSSYYRLLRENLKTSKIQVKENMDVLEELKILVDYDEKGYLLQIF 336

Query: 367 TKPVGDRPTIFIEIIQRVGCMLKDEEGKTYQKGGCGGFGKGNFSELFKSIEEYEKTLG 424
           TKP+ DRPT+F+E+IQR            +Q     GFG GNF+ LFK+ EE +   G
Sbjct: 337 TKPMQDRPTLFLEVIQR----------HNHQ-----GFGAGNFNSLFKAFEEEQALRG 379

Key enzyme in the degradation of tyrosine.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 1

EC: .

EC: 2

EC: 7

>sp|Q9S2F4|HPPD_STRCO 4-hydroxyphenylpyruvate dioxygenase OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=hpd PE=3 SV=1

 Score =  207 bits (526), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 147/406 (36%), Positives = 198/406 (48%), Gaps = 45/406 (11%)

Query: 24  KSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRF 83
           ++D F V     V F   +A   A  +S   GM +VA S    G+   ASY+L SG  RF
Sbjct: 14  QADPFPVKGMDAVVFAVGNAKQAAHYYSTAFGMKLVAYSGPENGSRETASYVLESGSARF 73

Query: 84  VFTAPYSPSISDAADAGNSSASLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSV 143
           VFT+   PS     D G   A              A HG     +A+EV DA  A   +V
Sbjct: 74  VFTSVIKPS----TDWGTFLAQ-----------HVAEHGDGVVDLAIEVPDARAAHAYAV 118

Query: 144 AHGAKPSSPPVILDN---LAVIAEVQLYGDVVLRYVSYKDKANHLDFLPGFEPTDEISSF 200
            HGA+  + P  + +     V+A +  YG+   R+   +       +LPG+     + + 
Sbjct: 119 EHGARSLAEPHEVKDEHGTVVLAAIATYGET--RHTLVERTGYDGPYLPGYVAAKPMVAP 176

Query: 201 PLDYGIRRLDHAVGNVP--ELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANN 258
           P     + +DH VGNV    +   V +     GF    EF  +D+ T  S L S V+A+ 
Sbjct: 177 PAQRVFQAVDHCVGNVELGRMNEWVGFYNKVMGFTNMKEFVGDDIATEYSALMSKVVADG 236

Query: 259 DEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFE 318
              V  P+NEP    K+KSQI  YLE   GAGVQH+AL + DI  T+R MR      G E
Sbjct: 237 TLKVKFPINEPAIA-KKKSQIDEYLEFYGGAGVQHIALNTNDIVATVRAMR----AAGVE 291

Query: 319 FMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFTKPVGDRPTIFI 378
           F+ +P  +YY  L   AG+  T   +    EL +LVDRD+ G LLQIFTKPV DRPT+F 
Sbjct: 292 FLDTPD-SYYDTLGEWAGE--TRVPVDVLRELKILVDRDEDGYLLQIFTKPVQDRPTVFF 348

Query: 379 EIIQRVGCMLKDEEGKTYQKGGCGGFGKGNFSELFKSIEEYEKTLG 424
           E+I+R G M               GFGKGNF  LF++IE  ++  G
Sbjct: 349 EMIERHGSM---------------GFGKGNFKALFEAIEREQEKRG 379

Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) (taxid: 100226)

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 1

EC: .

EC: 2

EC: 7

>sp|P49429|HPPD_MOUSE 4-hydroxyphenylpyruvate dioxygenase OS=Mus musculus GN=Hpd PE=1 SV=3

 Score =  206 bits (525), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 145/415 (34%), Positives = 208/415 (50%), Gaps = 53/415 (12%)

Query: 21  QNPKSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGD 80
           + PK +R R   FH V FW  +A   A  +   +G   +A   L TG+    S++++ G 
Sbjct: 7   KGPKPERGRFLHFHSVTFWVGNAKQAASFYCNKMGFEPLAYRGLETGSREVVSHVIKQGK 66

Query: 81  LRFVFTAPYSPSISDAADAGNSSASLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFN 140
           + FV  +  +P   +  D                      HG   + IA EVED D    
Sbjct: 67  IVFVLCSALNPWNKEMGD------------------HLVKHGDGVKDIAFEVEDCDHIVQ 108

Query: 141 TSVAHGAKPSSPPVI-LDNLAVI--AEVQLYGDVVLRYVSYKDKANHL-DFLPGFE-PTD 195
            +   GAK    P +  D    +  A +Q YGD     V   +K N+   FLPGFE PT 
Sbjct: 109 KARERGAKIVREPWVEQDKFGKVKFAVLQTYGDTTHTLV---EKINYTGRFLPGFEAPTY 165

Query: 196 EISSFPL--DYGIRRLDHAVGNVP--ELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLN 251
           + +  P      +  +DH VGN P  E+  A  +      FH F       V T  S L 
Sbjct: 166 KDTLLPKLPRCNLEIIDHIVGNQPDQEMQSASEWYLKNLQFHRFWSVDDTQVHTEYSSLR 225

Query: 252 SVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKR 311
           S+V+ N +E + +P+NEP  G ++KSQIQ Y+++N GAGVQH+AL +EDI   +R +R+R
Sbjct: 226 SIVVTNYEESIKMPINEPAPG-RKKSQIQEYVDYNGGAGVQHIALKTEDIITAIRHLRER 284

Query: 312 SGVGGFEFMPSPPPTYYKNLKN--RAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFTKP 369
               G EF+ +P  +YYK L+   ++  +   E +   EEL +LVD D++G LLQIFTKP
Sbjct: 285 ----GTEFLAAPS-SYYKLLRENLKSAKIQVKESMDVLEELHILVDYDEKGYLLQIFTKP 339

Query: 370 VGDRPTIFIEIIQRVGCMLKDEEGKTYQKGGCGGFGKGNFSELFKSIEEYEKTLG 424
           + DRPT+F+E+IQR            +Q     GFG GNF+ LFK+ EE +   G
Sbjct: 340 MQDRPTLFLEVIQR----------HNHQ-----GFGAGNFNSLFKAFEEEQALRG 379

Key enzyme in the degradation of tyrosine.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 1

EC: .

EC: 2

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	434
255558690	441	4-hydroxyphenylpyruvate dioxygenase, put	1.0	0.984	0.809	0.0
309260073	432	p-hydroxyphenylpyruvate dioxygenase [Man	0.974	0.979	0.828	0.0
224062651	444	predicted protein [Populus trichocarpa]	1.0	0.977	0.804	0.0
225001452	446	4-hydroxyphenylpyruvate dioxygenase [Lac	0.972	0.946	0.787	0.0
154240639	430	hydroxyphenylpyruvate dioxygenase [Copti	0.956	0.965	0.787	0.0
449453770	455	PREDICTED: 4-hydroxyphenylpyruvate dioxy	0.967	0.923	0.797	0.0
219842162	445	4-hydroxyphenylpyruvate dioxygenase [Hev	0.990	0.966	0.778	0.0
449504200	455	PREDICTED: 4-hydroxyphenylpyruvate dioxy	0.967	0.923	0.792	0.0
297848936	445	4-hydroxyphenylpyruvate dioxygenase [Ara	0.958	0.934	0.786	0.0
30679736	473	4-hydroxyphenylpyruvate dioxygenase [Ara	0.958	0.879	0.779	0.0

>gi|255558690|ref|XP_002520369.1| 4-hydroxyphenylpyruvate dioxygenase, putative [Ricinus communis] gi|223540416|gb|EEF41985.1| 4-hydroxyphenylpyruvate dioxygenase, putative [Ricinus communis]

 Score =  726 bits (1873), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/441 (80%), Positives = 392/441 (88%), Gaps = 7/441 (1%)

Query: 1   MGKE------TAELLVKLVGFKNFVRQNPKSDRFRVNRFHHVEFWCTDATNTARRFSWGL 54
           MGKE      T E   KLVGF NFVR NPKSDRF+V RFHHVEFWCTDATNTARRFSWGL
Sbjct: 1   MGKENDVVSSTPEQGFKLVGFSNFVRANPKSDRFKVKRFHHVEFWCTDATNTARRFSWGL 60

Query: 55  GMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNS-SASLPTFDHAA 113
           GMPIVAKSDLSTGN  HASYLLRSGDL F+FTAPYSPSI+   +  ++ +AS+PTF H  
Sbjct: 61  GMPIVAKSDLSTGNVTHASYLLRSGDLNFLFTAPYSPSIAAMENLSHTATASIPTFSHET 120

Query: 114 CRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVL 173
           CR F+A HGLA R+IA+EVEDA++AF TS +HGAKPS+ P++LDN AVIAEV LYGDVVL
Sbjct: 121 CRYFSAKHGLAVRAIAIEVEDAEIAFRTSASHGAKPSAEPILLDNRAVIAEVHLYGDVVL 180

Query: 174 RYVSYKDKANHLDFLPGFEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFH 233
           RY+SYK++ ++ +FLP FEP DE +SFP+DYGIRRLDHAVGNVPELAP V+YVK FTGFH
Sbjct: 181 RYISYKNEGSNFEFLPRFEPVDEATSFPVDYGIRRLDHAVGNVPELAPVVSYVKQFTGFH 240

Query: 234 EFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQH 293
           EFAEFT EDVGTSESGLNSVVLANN+E VL+PMNEPVFGTKRKSQIQTYLEHNEGAGVQH
Sbjct: 241 EFAEFTTEDVGTSESGLNSVVLANNEETVLIPMNEPVFGTKRKSQIQTYLEHNEGAGVQH 300

Query: 294 LALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVL 353
           LAL SEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVL+DEQIK+CEELG+L
Sbjct: 301 LALASEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLSDEQIKECEELGIL 360

Query: 354 VDRDDQGTLLQIFTKPVGDRPTIFIEIIQRVGCMLKDEEGKTYQKGGCGGFGKGNFSELF 413
           VDRDDQGTLLQIFTKPVGDRPTIFIEIIQRVGCMLKD+ GK YQKGGCGGFGKGNFSELF
Sbjct: 361 VDRDDQGTLLQIFTKPVGDRPTIFIEIIQRVGCMLKDDAGKEYQKGGCGGFGKGNFSELF 420

Query: 414 KSIEEYEKTLGAKPVAETAAA 434
           KSIEE+EKTL A+ V E A+A
Sbjct: 421 KSIEEFEKTLEARRVTEAASA 441

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|309260073|gb|ADO62712.1| p-hydroxyphenylpyruvate dioxygenase [Mangifera indica]

 Score =  714 bits (1843), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/431 (82%), Positives = 388/431 (90%), Gaps = 8/431 (1%)

Query: 1   MGKETAELLVKLVGFKNFVRQNPKSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVA 60
           MGK+      +LVGF NFVR NPKSDRF+V +FHH+EFWCTDATN ARRFSWGLGMPI+A
Sbjct: 1   MGKQDGSF--ELVGFSNFVRHNPKSDRFKVKKFHHIEFWCTDATNVARRFSWGLGMPIIA 58

Query: 61  KSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHAACRSFAAS 120
           KSDLSTGN VHASYLLRSG+L FVFTAPYSPSIS   D   ++AS+PTF + +CR+FA S
Sbjct: 59  KSDLSTGNMVHASYLLRSGELNFVFTAPYSPSIS--GDDYKNTASIPTFSYDSCRAFAVS 116

Query: 121 HGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSYKD 180
           HGLA RS+ V+VEDA++AF TS AHGAKP S P ILDN AVI+EV LYGDVVLRYVSYK 
Sbjct: 117 HGLAVRSVGVDVEDAEIAFTTSAAHGAKPVSSPRILDNRAVISEVHLYGDVVLRYVSYK- 175

Query: 181 KANHLD---FLPGFEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAE 237
             N+ D   FLPGFE TDEI+SFPLDYGIRRLDHAVGNVPEL PAV+YVK FTGFHEFAE
Sbjct: 176 SGNNFDSCLFLPGFERTDEITSFPLDYGIRRLDHAVGNVPELGPAVSYVKGFTGFHEFAE 235

Query: 238 FTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALV 297
           FTAEDVGTSESGLNSVVLA+NDEMVLLP+NEPVFGTKRKSQIQTYLEHNEGAG+QHLALV
Sbjct: 236 FTAEDVGTSESGLNSVVLASNDEMVLLPLNEPVFGTKRKSQIQTYLEHNEGAGLQHLALV 295

Query: 298 SEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRD 357
           SEDIF TLREM+KRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIK+CEELG+LVDRD
Sbjct: 296 SEDIFGTLREMKKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKECEELGILVDRD 355

Query: 358 DQGTLLQIFTKPVGDRPTIFIEIIQRVGCMLKDEEGKTYQKGGCGGFGKGNFSELFKSIE 417
           +QGTLLQIFTKPVGDRPTIFIEIIQRVGCMLKD+EGKTYQKGGCGGFGKGNFSELFKSIE
Sbjct: 356 EQGTLLQIFTKPVGDRPTIFIEIIQRVGCMLKDDEGKTYQKGGCGGFGKGNFSELFKSIE 415

Query: 418 EYEKTLGAKPV 428
           EYEKTL A+ +
Sbjct: 416 EYEKTLEARQI 426

Source: Mangifera indica

Species: Mangifera indica

Genus: Mangifera

Family: Anacardiaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224062651|ref|XP_002300867.1| predicted protein [Populus trichocarpa] gi|222842593|gb|EEE80140.1| predicted protein [Populus trichocarpa]

 Score =  707 bits (1824), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/444 (80%), Positives = 395/444 (88%), Gaps = 10/444 (2%)

Query: 1   MGKE--TAELL--VKLVGFKNFVRQNPKSDRFRVNRFHHVEFWCTDATNTARRFSWGLGM 56
           MGKE  T+E     KL GF +FVR NP+SDRF+VNRFHH+EFWCTDATNTARRFSWGLGM
Sbjct: 1   MGKENETSETPGGFKLGGFSSFVRANPRSDRFKVNRFHHIEFWCTDATNTARRFSWGLGM 60

Query: 57  PIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNS-SASLPTFDHAACR 115
           PIVAKSDLSTGN  HASYLLRSGDL F+FTAPYSPSI+   +  ++ +AS+PTF+H   R
Sbjct: 61  PIVAKSDLSTGNATHASYLLRSGDLNFLFTAPYSPSIASMDNLSHTATASIPTFNHETSR 120

Query: 116 SFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRY 175
            F+A HGLA R+IA+EV+DA++AF TSVAHGAKPS+ PV+LDN AV+AEV LYGDVVLRY
Sbjct: 121 GFSAKHGLAVRAIAIEVDDAELAFTTSVAHGAKPSASPVLLDNRAVVAEVHLYGDVVLRY 180

Query: 176 VSYKD-KANHLD----FLPGFEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFT 230
           VSY++ +++  D    FLP FE  +  SSFPLDYGIRRLDHAVGNVPELA AV YVK FT
Sbjct: 181 VSYRNSESDDSDPGSWFLPKFEAVEAASSFPLDYGIRRLDHAVGNVPELAQAVNYVKEFT 240

Query: 231 GFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAG 290
           GFHEFAEFTAEDVGTSESGLNSVVLANN+E VL PMNEPVFGTKRKSQIQTYLEHNEGAG
Sbjct: 241 GFHEFAEFTAEDVGTSESGLNSVVLANNEETVLFPMNEPVFGTKRKSQIQTYLEHNEGAG 300

Query: 291 VQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEEL 350
           +QHLALVSEDIFRTLREMRKRS VGGFEFMPSPPPTYYKNLK+RAGDVL+DEQIK+CEEL
Sbjct: 301 LQHLALVSEDIFRTLREMRKRSAVGGFEFMPSPPPTYYKNLKSRAGDVLSDEQIKECEEL 360

Query: 351 GVLVDRDDQGTLLQIFTKPVGDRPTIFIEIIQRVGCMLKDEEGKTYQKGGCGGFGKGNFS 410
           G+LVDRDDQGTLLQIFTKPVGDRPT+FIEIIQRVGCMLKDE+GK YQKGGCGGFGKGNFS
Sbjct: 361 GILVDRDDQGTLLQIFTKPVGDRPTMFIEIIQRVGCMLKDEKGKEYQKGGCGGFGKGNFS 420

Query: 411 ELFKSIEEYEKTLGAKPVAETAAA 434
           ELFKSIEEYEKTLGAK +AETA+A
Sbjct: 421 ELFKSIEEYEKTLGAKIIAETASA 444

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225001452|gb|ACN78586.1| 4-hydroxyphenylpyruvate dioxygenase [Lactuca sativa]

 Score =  706 bits (1822), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/428 (78%), Positives = 374/428 (87%), Gaps = 6/428 (1%)

Query: 11  KLVGFKNFVRQNPKSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTV 70
           KLVGF NF+R NP SD+F V RFHH+ FWC+DATNTARRFSWGLGMPIV KSDLSTGN  
Sbjct: 20  KLVGFNNFIRTNPMSDKFSVKRFHHIGFWCSDATNTARRFSWGLGMPIVQKSDLSTGNAT 79

Query: 71  HASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHAACRSFAASHGLAARSIAV 130
           HASYLLRSG L F+FTAPYSPSIS A  +  ++AS+P+F H  CR+F ASHGLA RS+A+
Sbjct: 80  HASYLLRSGQLNFLFTAPYSPSISSAVTS--TTASIPSFSHTDCRNFTASHGLAVRSVAI 137

Query: 131 EVEDADVAFNTSVAHGAKPSSPPVIL-DNLAVIAEVQLYGDVVLRYVSYKDKA--NHLDF 187
           EVEDA++AF+ SV+HGAKPSS P+ L +N  V++EV+LYGDVVLRY+SYK+       +F
Sbjct: 138 EVEDAEIAFSVSVSHGAKPSSSPITLGNNDVVLSEVKLYGDVVLRYISYKNPNFDGISNF 197

Query: 188 LPGFEPTDEISSFP-LDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTS 246
           LPGFEP ++ SSFP LDYGIRRLDHAVGNVPELAPAV YVKS TGFHEFAEFTAEDVGTS
Sbjct: 198 LPGFEPVEKTSSFPDLDYGIRRLDHAVGNVPELAPAVDYVKSITGFHEFAEFTAEDVGTS 257

Query: 247 ESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLR 306
           ESGLNSVVLA N EMVL+PMNEPV+GTKRKSQIQTYLEHNEGAGVQHLAL SEDIFRTLR
Sbjct: 258 ESGLNSVVLACNSEMVLIPMNEPVYGTKRKSQIQTYLEHNEGAGVQHLALASEDIFRTLR 317

Query: 307 EMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIF 366
           EMRKRSG+GG EFMPSPPPTYY+NLKNR GDVLTDE+IK+CEELG+LVDRDDQGTLLQIF
Sbjct: 318 EMRKRSGIGGLEFMPSPPPTYYRNLKNRVGDVLTDEEIKECEELGILVDRDDQGTLLQIF 377

Query: 367 TKPVGDRPTIFIEIIQRVGCMLKDEEGKTYQKGGCGGFGKGNFSELFKSIEEYEKTLGAK 426
           TKPVGDRPTIFIEIIQRVGCM+KD EGK  QK GCGGFGKGNFSELFKSIEEYE+TL A+
Sbjct: 378 TKPVGDRPTIFIEIIQRVGCMVKDGEGKVQQKAGCGGFGKGNFSELFKSIEEYEETLEAR 437

Query: 427 PVAETAAA 434
              E  AA
Sbjct: 438 TTTEPTAA 445

Source: Lactuca sativa

Species: Lactuca sativa

Genus: Lactuca

Family: Asteraceae

Order: Asterales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|154240639|dbj|BAF74636.1| hydroxyphenylpyruvate dioxygenase [Coptis japonica var. dissecta]

 Score =  696 bits (1797), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/418 (78%), Positives = 370/418 (88%), Gaps = 3/418 (0%)

Query: 10  VKLVGFKNFVRQNPKSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNT 69
           +KLVG  NFV  NPKSD+F V +FHH+EFW TDATNTARRFSWGLGMP+VAKSDLSTGN 
Sbjct: 9   LKLVGHTNFVHNNPKSDKFHVKKFHHIEFWSTDATNTARRFSWGLGMPMVAKSDLSTGNM 68

Query: 70  VHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHAACRSFAASHGLAARSIA 129
           VHASYLLRSG+L F+FTAPYSPSI  A +    +AS+PT+ H   R FA++HGLA R+IA
Sbjct: 69  VHASYLLRSGELNFLFTAPYSPSI--AGNTLTHTASIPTYSHNLARLFASTHGLAVRAIA 126

Query: 130 VEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSYKDKANHLDFLP 189
           +EV+DA++A+N SVA+GAKPSS P+ LD   V++E+QLYGDVVLRY+S+K+      FLP
Sbjct: 127 IEVQDAELAYNISVANGAKPSSSPIKLDEGVVLSEIQLYGDVVLRYLSFKNTNQSCPFLP 186

Query: 190 GFEPTDEISSFP-LDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSES 248
           GFE   E+SS   LD+GIRRLDHAVGNVP LA A+ Y+K FTGFHEFAEFTAEDVGT+ES
Sbjct: 187 GFEEVGEVSSSRGLDFGIRRLDHAVGNVPNLAEAIGYLKEFTGFHEFAEFTAEDVGTTES 246

Query: 249 GLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREM 308
           GLNS+VLA+NDEMVLLPMNEPV+GTKRKSQIQTYLEHNEGAGVQHLALVSEDIF TLREM
Sbjct: 247 GLNSIVLASNDEMVLLPMNEPVYGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFTTLREM 306

Query: 309 RKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFTK 368
           R+RSGVGGFEFMPSPPPTYYKNLKNRAGDVL+DEQIK+CEELG+LVDRD QGTLLQIFTK
Sbjct: 307 RRRSGVGGFEFMPSPPPTYYKNLKNRAGDVLSDEQIKECEELGILVDRDAQGTLLQIFTK 366

Query: 369 PVGDRPTIFIEIIQRVGCMLKDEEGKTYQKGGCGGFGKGNFSELFKSIEEYEKTLGAK 426
           PVGDRPTIF+EIIQR+GCMLKDEEGKTYQK GCGGFGKGNFSELFKSIEEYEKTL AK
Sbjct: 367 PVGDRPTIFVEIIQRLGCMLKDEEGKTYQKAGCGGFGKGNFSELFKSIEEYEKTLEAK 424

Source: Coptis japonica var. dissecta

Species: Coptis japonica

Genus: Coptis

Family: Ranunculaceae

Order: Ranunculales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453770|ref|XP_004144629.1| PREDICTED: 4-hydroxyphenylpyruvate dioxygenase-like [Cucumis sativus]

 Score =  693 bits (1789), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/429 (79%), Positives = 383/429 (89%), Gaps = 9/429 (2%)

Query: 11  KLVGFKNFVRQNPKSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTV 70
           +L GF NF+R NPKSDRF+V RFHH+EFWCTDATN ARRFSWGLGM IVAKSDLSTGN  
Sbjct: 27  ELQGFDNFIRTNPKSDRFKVKRFHHIEFWCTDATNVARRFSWGLGMQIVAKSDLSTGNMT 86

Query: 71  HASYLLRSGDLRFVFTAPYSPSISDAAD-AGNSSASLPTFDHAACRSFAASHGLAARSIA 129
           HASYLLRSG L F+FTAPYSPSI+ A +    S+AS+P+FDH+ CRSF+ +HG  AR+IA
Sbjct: 87  HASYLLRSGHLCFLFTAPYSPSIAAAQNLTPASTASIPSFDHSVCRSFSGTHGFGARAIA 146

Query: 130 VEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSYKDKA------N 183
           +EVEDA++AF TSVAHGAKPS PP++L+N AV++EV LYGDVVLRY+SYK+        N
Sbjct: 147 LEVEDAEIAFRTSVAHGAKPSCPPIVLENRAVLSEVHLYGDVVLRYISYKNPVSGDNGEN 206

Query: 184 HLD--FLPGFEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAE 241
             D  FLP FE  +E +SFPLD+GIRRLDHAVGNVPEL PAV+Y+K FTGFHEFAEFTAE
Sbjct: 207 KPDEWFLPKFEAMEETASFPLDFGIRRLDHAVGNVPELGPAVSYLKGFTGFHEFAEFTAE 266

Query: 242 DVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDI 301
           DVGTSESGLNS+VLANN+EMVLLP+NEPVFGTKRKSQIQTYLEHNEGAGVQHLAL+SEDI
Sbjct: 267 DVGTSESGLNSMVLANNEEMVLLPINEPVFGTKRKSQIQTYLEHNEGAGVQHLALMSEDI 326

Query: 302 FRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGT 361
           FRTLREMRKRS VGGFEFMPSPPPTYYKNLK+RAGDVLTDEQIK+CEELG+LVD+DDQGT
Sbjct: 327 FRTLREMRKRSSVGGFEFMPSPPPTYYKNLKSRAGDVLTDEQIKECEELGILVDKDDQGT 386

Query: 362 LLQIFTKPVGDRPTIFIEIIQRVGCMLKDEEGKTYQKGGCGGFGKGNFSELFKSIEEYEK 421
           LLQIFTKPVGDRPTIFIEIIQR+GCM+KDEEGK +QKGGCGGFGKGNFSELFKSIEEYEK
Sbjct: 387 LLQIFTKPVGDRPTIFIEIIQRLGCMMKDEEGKAFQKGGCGGFGKGNFSELFKSIEEYEK 446

Query: 422 TLGAKPVAE 430
           TL AK V+E
Sbjct: 447 TLEAKRVSE 455

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|219842162|dbj|BAH10638.1| 4-hydroxyphenylpyruvate dioxygenase [Hevea brasiliensis]

 Score =  690 bits (1781), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/443 (77%), Positives = 383/443 (86%), Gaps = 13/443 (2%)

Query: 1   MGKETAELL-----VKLVGFKNFVRQNPKSDRFRVNRFHHVEFWCTDATNTARRFSWGLG 55
           MGKE   +       KL+GF NFVR NP+SD F+V RFHHVEFWCTDATNTA RFSWGLG
Sbjct: 1   MGKENDSVPSSAPGFKLLGFSNFVRTNPRSDLFKVKRFHHVEFWCTDATNTACRFSWGLG 60

Query: 56  MPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAAD-AGNSSASLPTFDHAAC 114
           MP VAKSDLSTGN  HASYLLRSGDL F+FTAPYSP+I+   + +  ++AS+PTF H AC
Sbjct: 61  MPFVAKSDLSTGNVTHASYLLRSGDLSFLFTAPYSPTIASMENFSHTATASIPTFSHEAC 120

Query: 115 RSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLR 174
           R+F+A HGL  R+IA+EVEDA++A+NTSVA GA P   P+ LDN AV+AEV LYGDVVLR
Sbjct: 121 RNFSAKHGLGVRAIAIEVEDAEIAYNTSVARGALPMGGPITLDNRAVVAEVHLYGDVVLR 180

Query: 175 YVSYKDKANHLD-------FLPGFEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVK 227
           Y+SYK+   +L+       FLP FE  DE SSFPLDYGIRRLDHAVGNVPELAPAV+YVK
Sbjct: 181 YISYKNSNPNLNDSSPDSWFLPKFESVDEASSFPLDYGIRRLDHAVGNVPELAPAVSYVK 240

Query: 228 SFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNE 287
            FTGFHEFAEFTAEDVGTSESGLNS+VLANN++ VLLP+NEPVFGTKRKSQIQTYLEHNE
Sbjct: 241 EFTGFHEFAEFTAEDVGTSESGLNSLVLANNEDTVLLPLNEPVFGTKRKSQIQTYLEHNE 300

Query: 288 GAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQC 347
           GAG+QHLALVSEDIF+TLREMR+RSGVGGF+FMPSPPPTYY+NLKNR GDVLTDEQIK+C
Sbjct: 301 GAGLQHLALVSEDIFKTLREMRRRSGVGGFDFMPSPPPTYYRNLKNRVGDVLTDEQIKEC 360

Query: 348 EELGVLVDRDDQGTLLQIFTKPVGDRPTIFIEIIQRVGCMLKDEEGKTYQKGGCGGFGKG 407
           EELG+LVDRDDQGTLLQIFTKPVGDRPTIFIEIIQRVGCM+KDE GK YQKGGCGGFGKG
Sbjct: 361 EELGILVDRDDQGTLLQIFTKPVGDRPTIFIEIIQRVGCMIKDETGKEYQKGGCGGFGKG 420

Query: 408 NFSELFKSIEEYEKTLGAKPVAE 430
           NFSELFKSIEEYEKTL AK  AE
Sbjct: 421 NFSELFKSIEEYEKTLEAKRNAE 443

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449504200|ref|XP_004162282.1| PREDICTED: 4-hydroxyphenylpyruvate dioxygenase-like [Cucumis sativus]

 Score =  689 bits (1777), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/429 (79%), Positives = 382/429 (89%), Gaps = 9/429 (2%)

Query: 11  KLVGFKNFVRQNPKSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTV 70
           +L GF NF+R NPKSDRF+V RFHH+EFWCTDATN ARRFSWGLGM IVAKSDLSTGN  
Sbjct: 27  ELQGFDNFIRTNPKSDRFKVKRFHHIEFWCTDATNVARRFSWGLGMQIVAKSDLSTGNMT 86

Query: 71  HASYLLRSGDLRFVFTAPYSPSISDAAD-AGNSSASLPTFDHAACRSFAASHGLAARSIA 129
           HASYLLRSG L F+FTAPYSPSI+ A +    S+AS+P+FDH+ CRSF+ +HG  AR+IA
Sbjct: 87  HASYLLRSGHLCFLFTAPYSPSIAAAQNLTPASTASIPSFDHSVCRSFSGTHGFGARAIA 146

Query: 130 VEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSYKDKA------N 183
           +EVEDA++AF TSVAHGAKPS PP++L+N AV++EV LYGDVVLRY+SYK+        N
Sbjct: 147 LEVEDAEIAFRTSVAHGAKPSCPPIVLENRAVLSEVHLYGDVVLRYISYKNPVSGDNGEN 206

Query: 184 HLD--FLPGFEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAE 241
             D  FLP FE  +E +SFPLD+GIRRLDHAVGNVPEL PAV+Y+K FTGFHEFAEFTAE
Sbjct: 207 KPDEWFLPKFEAMEETASFPLDFGIRRLDHAVGNVPELGPAVSYLKGFTGFHEFAEFTAE 266

Query: 242 DVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDI 301
           DVGTSESGLNS+VLAN++EMVLLP+NEPVFGTKRKSQIQTYLEHNEGAGVQHLAL+SEDI
Sbjct: 267 DVGTSESGLNSMVLANSEEMVLLPINEPVFGTKRKSQIQTYLEHNEGAGVQHLALMSEDI 326

Query: 302 FRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGT 361
           FRTLREMRKRS VGGFEFMPSPPPTYYKNLK+RAGDV TDEQIK+CEELG+LVD+DDQGT
Sbjct: 327 FRTLREMRKRSSVGGFEFMPSPPPTYYKNLKSRAGDVPTDEQIKECEELGILVDKDDQGT 386

Query: 362 LLQIFTKPVGDRPTIFIEIIQRVGCMLKDEEGKTYQKGGCGGFGKGNFSELFKSIEEYEK 421
           LLQIFTKPVGDRPTIFIEIIQR+GCM+KDEEGK +QKGGCGGFGKGNFSELFKSIEEYEK
Sbjct: 387 LLQIFTKPVGDRPTIFIEIIQRLGCMMKDEEGKAFQKGGCGGFGKGNFSELFKSIEEYEK 446

Query: 422 TLGAKPVAE 430
           TL AK V+E
Sbjct: 447 TLEAKRVSE 455

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297848936|ref|XP_002892349.1| 4-hydroxyphenylpyruvate dioxygenase [Arabidopsis lyrata subsp. lyrata] gi|297338191|gb|EFH68608.1| 4-hydroxyphenylpyruvate dioxygenase [Arabidopsis lyrata subsp. lyrata]

 Score =  674 bits (1740), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/417 (78%), Positives = 366/417 (87%), Gaps = 1/417 (0%)

Query: 11  KLVGFKNFVRQNPKSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTV 70
           KLVGF  FVR+NPKSD+F+V  FHH+EFWC DATN ARRFSWGLGM   AKSDLSTGN V
Sbjct: 25  KLVGFSKFVRKNPKSDKFKVKCFHHIEFWCGDATNVARRFSWGLGMRFSAKSDLSTGNMV 84

Query: 71  HASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHAACRSFAASHGLAARSIAV 130
           HASYLL SGDLRF+FTAPYSPS S        +AS+P+FDH +CRSF +SHGL  R++A+
Sbjct: 85  HASYLLTSGDLRFLFTAPYSPSFSAGEIKPTMTASIPSFDHVSCRSFFSSHGLGVRAVAI 144

Query: 131 EVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSYK-DKANHLDFLP 189
           EVEDA+ AF+ SVA+GA PSSPP++LD    IAEV+LYGDVVLRYVSYK    +  +FLP
Sbjct: 145 EVEDAESAFSISVANGAIPSSPPIVLDESVTIAEVKLYGDVVLRYVSYKGGNTDKSEFLP 204

Query: 190 GFEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESG 249
           GFEP ++ SSFPLDYGIRRLDHAVGNVPEL PA+ YV  FTGFH+FAEFTA+DVGT+ESG
Sbjct: 205 GFEPVEDTSSFPLDYGIRRLDHAVGNVPELGPALTYVAGFTGFHQFAEFTADDVGTAESG 264

Query: 250 LNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMR 309
           LNS VLANNDEMVLLP+NEPV GTKRKSQIQTYLEHNEGAG+QHLAL+SEDIFRTLREMR
Sbjct: 265 LNSAVLANNDEMVLLPINEPVHGTKRKSQIQTYLEHNEGAGLQHLALMSEDIFRTLREMR 324

Query: 310 KRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFTKP 369
           KRS +GGF+FMPSPPPTYY+NLK R GDVL+DEQIK+CEELG+LVDRDDQGTLLQIFTKP
Sbjct: 325 KRSSIGGFDFMPSPPPTYYQNLKKRVGDVLSDEQIKECEELGILVDRDDQGTLLQIFTKP 384

Query: 370 VGDRPTIFIEIIQRVGCMLKDEEGKTYQKGGCGGFGKGNFSELFKSIEEYEKTLGAK 426
           +GDRPTIFIEIIQRVGCM+KDEEGK YQ GGCGGFGKGNFSELFKSIEEYEKTL AK
Sbjct: 385 LGDRPTIFIEIIQRVGCMMKDEEGKAYQSGGCGGFGKGNFSELFKSIEEYEKTLEAK 441

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30679736|ref|NP_172144.2| 4-hydroxyphenylpyruvate dioxygenase [Arabidopsis thaliana] gi|6692679|gb|AAF24813.1|AC007592_6 F12K11.9 [Arabidopsis thaliana] gi|332189885|gb|AEE28006.1| 4-hydroxyphenylpyruvate dioxygenase [Arabidopsis thaliana]

 Score =  674 bits (1739), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/417 (77%), Positives = 368/417 (88%), Gaps = 1/417 (0%)

Query: 11  KLVGFKNFVRQNPKSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTV 70
           KLVGF  FVR+NPKSD+F+V RFHH+EFWC DATN ARRFSWGLGM   AKSDLSTGN V
Sbjct: 53  KLVGFSKFVRKNPKSDKFKVKRFHHIEFWCGDATNVARRFSWGLGMRFSAKSDLSTGNMV 112

Query: 71  HASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHAACRSFAASHGLAARSIAV 130
           HASYLL SGDLRF+FTAPYSPS+S       ++AS+P+FDH +CRSF +SHGL  R++A+
Sbjct: 113 HASYLLTSGDLRFLFTAPYSPSLSAGEIKPTTTASIPSFDHGSCRSFFSSHGLGVRAVAI 172

Query: 131 EVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSYK-DKANHLDFLP 189
           EVEDA+ AF+ SVA+GA PSSPP++L+    IAEV+LYGDVVLRYVSYK +     +FLP
Sbjct: 173 EVEDAESAFSISVANGAIPSSPPIVLNEAVTIAEVKLYGDVVLRYVSYKAEDTEKSEFLP 232

Query: 190 GFEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESG 249
           GFE  ++ SSFPLDYGIRRLDHAVGNVPEL PA+ YV  FTGFH+FAEFTA+DVGT+ESG
Sbjct: 233 GFERVEDASSFPLDYGIRRLDHAVGNVPELGPALTYVAGFTGFHQFAEFTADDVGTAESG 292

Query: 250 LNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMR 309
           LNS VLA+NDEMVLLP+NEPV GTKRKSQIQTYLEHNEGAG+QHLAL+SEDIFRTLREMR
Sbjct: 293 LNSAVLASNDEMVLLPINEPVHGTKRKSQIQTYLEHNEGAGLQHLALMSEDIFRTLREMR 352

Query: 310 KRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFTKP 369
           KRS +GGF+FMPSPPPTYY+NLK R GDVL+D+QIK+CEELG+LVDRDDQGTLLQIFTKP
Sbjct: 353 KRSSIGGFDFMPSPPPTYYQNLKKRVGDVLSDDQIKECEELGILVDRDDQGTLLQIFTKP 412

Query: 370 VGDRPTIFIEIIQRVGCMLKDEEGKTYQKGGCGGFGKGNFSELFKSIEEYEKTLGAK 426
           +GDRPTIFIEIIQRVGCM+KDEEGK YQ GGCGGFGKGNFSELFKSIEEYEKTL AK
Sbjct: 413 LGDRPTIFIEIIQRVGCMMKDEEGKAYQSGGCGGFGKGNFSELFKSIEEYEKTLEAK 469

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	434
TIGR_CMR|BA_0240	372	BA_0240 "4-hydroxyphenylpyruva	0.592	0.690	0.426	1.3e-55
UNIPROTKB|Q5EA20	393	HPD "4-hydroxyphenylpyruvate d	0.762	0.842	0.380	1.8e-48
UNIPROTKB|P32754	393	HPD "4-hydroxyphenylpyruvate d	0.764	0.844	0.373	6e-48
UNIPROTKB|F6X9H7	393	HPD "4-hydroxyphenylpyruvate d	0.764	0.844	0.370	9.8e-48
RGD|61974	393	Hpd "4-hydroxyphenylpyruvate d	0.778	0.860	0.362	1.8e-46
UNIPROTKB|P32755	393	Hpd "4-hydroxyphenylpyruvate d	0.778	0.860	0.362	1.8e-46
MGI|MGI:96213	393	Hpd "4-hydroxyphenylpyruvic ac	0.771	0.852	0.365	4.8e-46
UNIPROTKB|Q96X22	419	HPD4 "4-hydroxyphenylpyruvate	0.771	0.799	0.340	5.6e-45
ZFIN|ZDB-GENE-040808-62	393	hpdb "4-hydroxyphenylpyruvate	0.785	0.867	0.355	1.2e-44
UNIPROTKB|F1NVJ0	393	HPD "4-hydroxyphenylpyruvate d	0.585	0.646	0.383	1.4e-44

TIGR_CMR|BA_0240 BA_0240 "4-hydroxyphenylpyruvate dioxygenase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 499 (180.7 bits), Expect = 1.3e-55, Sum P(2) = 1.3e-55
 Identities = 116/272 (42%), Positives = 161/272 (59%)

Query:   117 FAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVIL-DNLAVI--AEVQLYGDVVL 173
             F  +HG   + +A+ V+D D A++ +V  GA   +PPV L D    +  A +  YGD + 
Sbjct:    87 FVKTHGDGVKDVALLVDDVDKAYSEAVKRGAVAIAPPVELTDENGTLKKAVIGTYGDTIH 146

Query:   174 RYVSYKDKANHLDFLPGFEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFH 233
               V  K+      F+PGF+  +    F  + G+  +DH VGNV ++   V+Y ++  GF 
Sbjct:   147 TLVERKNYKG--TFMPGFQKAEFDIPFE-ESGLIAVDHVVGNVEKMEEWVSYYENVMGFK 203

Query:   234 EFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQH 293
             +   F  +D+ T  S L S V+ N    +  P+NEP  G KRKSQIQ YLE   GAGVQH
Sbjct:   204 QMIHFDDDDISTEYSALMSKVMTNGSR-IKFPINEPADG-KRKSQIQEYLEFYNGAGVQH 261

Query:   294 LALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVL 353
             LAL++ DI +T+  +R      G EF+ +P  TYY  L  R G +  DE+I + +EL +L
Sbjct:   262 LALLTNDIVKTVEALR----ANGVEFLDTPD-TYYDELTARVGKI--DEEIDKLKELKIL 314

Query:   354 VDRDDQGTLLQIFTKPVGDRPTIFIEIIQRVG 385
             VDRDD+G LLQIFTKP+ DRPT+FIEIIQR G
Sbjct:   315 VDRDDEGYLLQIFTKPIVDRPTLFIEIIQRKG 346

GO:0003868 "4-hydroxyphenylpyruvate dioxygenase activity" evidence=ISS

GO:0006559 "L-phenylalanine catabolic process" evidence=ISS

GO:0006572 "tyrosine catabolic process" evidence=ISS

UNIPROTKB|Q5EA20 HPD "4-hydroxyphenylpyruvate dioxygenase" [Bos taurus (taxid:9913)]

 Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
 Identities = 142/373 (38%), Positives = 195/373 (52%)

Query:    24 KSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRF 83
             K +R R   FH V FW  +A   A  +   LG   +A   L TG+    S++++ G + F
Sbjct:    10 KPERGRFLHFHSVTFWVGNAKQAASYYCSKLGFEPLAYKGLETGSREVVSHVVKQGQIVF 69

Query:    84 VFTAPYSPXXXXXXXXXXXXXXLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSV 143
             VF++  +P                  DH         HG   + IA EVED D     + 
Sbjct:    70 VFSSALNPWNKEMG------------DHLV------KHGDGVKDIAFEVEDCDYIVQKAR 111

Query:   144 AHGAKPSSPP-VILDNLAVI--AEVQLYGDVVLRYVSYKDKANHLD-FLPGFE--P--TD 195
               GAK    P V  D L  +  A +Q YGD     V   +K N+   FLPGFE  P    
Sbjct:   112 ERGAKIVREPWVEQDKLGKVKFAVLQTYGDTTHTLV---EKMNYTGRFLPGFEAPPFMDP 168

Query:   196 EISSFPLDYGIRRLDHAVGNVP--ELAPAVA-YVKSFTGFHEFAEFTAEDVGTSESGLNS 252
             ++S  P    +  +DH VGN P  E+  A   Y+K+   FH F       V T  S L S
Sbjct:   169 QLSKLP-SCSLEIIDHIVGNQPDQEMVSASEWYLKNLQ-FHRFWSVDDTQVHTEYSSLRS 226

Query:   253 VVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRS 312
             VV+AN +E + +P+NEP  G K+KSQIQ Y+++N GAGVQH+AL ++DI   +R +R+R 
Sbjct:   227 VVVANYEESIKMPINEPAPG-KKKSQIQEYVDYNGGAGVQHIALKTKDIITAIRHLRER- 284

Query:   313 GVGGFEFMPSPPPTYYKNLKNRA--GDVLTDEQIKQCEELGVLVDRDDQGTLLQIFTKPV 370
                G EF+ + P TYYK L+ +     +   E I   EEL +LVD D++G LLQIFTKP+
Sbjct:   285 ---GVEFL-AVPSTYYKQLREKLKMAKIRVKENIDILEELKILVDYDEKGYLLQIFTKPM 340

Query:   371 GDRPTIFIEIIQR 383
              DRPT+F+E+IQR
Sbjct:   341 QDRPTLFLEVIQR 353

GO:0003868 "4-hydroxyphenylpyruvate dioxygenase activity" evidence=ISS

GO:0006572 "tyrosine catabolic process" evidence=ISS

GO:0006559 "L-phenylalanine catabolic process" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|P32754 HPD "4-hydroxyphenylpyruvate dioxygenase" [Homo sapiens (taxid:9606)]

 Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
 Identities = 139/372 (37%), Positives = 192/372 (51%)

Query:    24 KSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRF 83
             K +R R   FH V FW  +A   A  +   +G   +A   L TG+    S++++ G + F
Sbjct:    10 KPERGRFLHFHSVTFWVGNAKQAASFYCSKMGFEPLAYRGLETGSREVVSHVIKQGKIVF 69

Query:    84 VFTAPYSPXXXXXXXXXXXXXXLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSV 143
             V ++  +P                  DH         HG   + IA EVED D     + 
Sbjct:    70 VLSSALNPWNKEMG------------DHLV------KHGDGVKDIAFEVEDCDYIVQKAR 111

Query:   144 AHGAKPSSPP-VILDNLAVI--AEVQLYGDVVLRYVSYKDKANHL-DFLPGFE-PT--DE 196
               GAK    P V  D    +  A +Q YGD     V   +K N++  FLPG+E P   D 
Sbjct:   112 ERGAKIMREPWVEQDKFGKVKFAVLQTYGDTTHTLV---EKMNYIGQFLPGYEAPAFMDP 168

Query:   197 ISSFPLDYGIRRLDHAVGNVP--ELAPAVA-YVKSFTGFHEFAEFTAEDVGTSESGLNSV 253
             +        +  +DH VGN P  E+  A   Y+K+   FH F       V T  S L S+
Sbjct:   169 LLPKLPKCSLEMIDHIVGNQPDQEMVSASEWYLKNLQ-FHRFWSVDDTQVHTEYSSLRSI 227

Query:   254 VLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSG 313
             V+AN +E + +P+NEP  G K+KSQIQ Y+++N GAGVQH+AL +EDI   +R +R+R  
Sbjct:   228 VVANYEESIKMPINEPAPG-KKKSQIQEYVDYNGGAGVQHIALKTEDIITAIRHLRER-- 284

Query:   314 VGGFEFMPSPPPTYYKNLKNR--AGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFTKPVG 371
               G EF+ S P TYYK L+ +     +   E I   EEL +LVD D++G LLQIFTKPV 
Sbjct:   285 --GLEFL-SVPSTYYKQLREKLKTAKIKVKENIDALEELKILVDYDEKGYLLQIFTKPVQ 341

Query:   372 DRPTIFIEIIQR 383
             DRPT+F+E+IQR
Sbjct:   342 DRPTLFLEVIQR 353

GO:0046872 "metal ion binding" evidence=IEA

GO:0006559 "L-phenylalanine catabolic process" evidence=IEA;TAS

GO:0006572 "tyrosine catabolic process" evidence=ISS

GO:0003868 "4-hydroxyphenylpyruvate dioxygenase activity" evidence=EXP;ISS

GO:0005829 "cytosol" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|F6X9H7 HPD "4-hydroxyphenylpyruvate dioxygenase" [Canis lupus familiaris (taxid:9615)]

 Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
 Identities = 138/372 (37%), Positives = 194/372 (52%)

Query:    24 KSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRF 83
             K +R R   FH V FW  +A   A  +   +G   +A   L TG+    S++++ G + F
Sbjct:    10 KPERGRFLHFHSVTFWVGNAKQAASFYCNKMGFEPLAYKGLETGSREVVSHVIKQGKIVF 69

Query:    84 VFTAPYSPXXXXXXXXXXXXXXLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSV 143
             VF++  +P                  DH         HG   + IA EVED D     + 
Sbjct:    70 VFSSALNPWNKEMG------------DHLV------KHGDGVKDIAFEVEDCDYIVQKAR 111

Query:   144 AHGAKPSSPPVILDNL---AVIAEVQLYGDVVLRYVSYKDKANHLD-FLPGFE-PT--DE 196
               GAK    P I ++      +A +Q YGD     V   +K N+   FLPGFE P   D 
Sbjct:   112 EQGAKIMREPWIEEDKFGKVKLAVLQTYGDTTHTLV---EKINYTGRFLPGFEAPACVDP 168

Query:   197 ISSFPLDYGIRRLDHAVGNVP--ELAPAVA-YVKSFTGFHEFAEFTAEDVGTSESGLNSV 253
             + S      +  +DH VGN P  E+  A   Y+K+   FH F       V T  S L S+
Sbjct:   169 LLSKLPSCSLEIIDHIVGNQPDQEMVSASEWYLKNLQ-FHRFWSVDDTQVHTEYSSLRSI 227

Query:   254 VLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSG 313
             V+AN +E + +P+NEP  G K+KSQIQ Y+++N GAGVQH+AL ++DI   +R +R R  
Sbjct:   228 VVANYEESIKMPINEPAPG-KKKSQIQEYVDYNGGAGVQHIALKTQDIITAIRHLRDR-- 284

Query:   314 VGGFEFMPSPPPTYYKNLKNR--AGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFTKPVG 371
               G EF+ + P TYYK L+ +  +  +   E I   EEL +LVD D++G LLQIFTKP+ 
Sbjct:   285 --GMEFL-AVPSTYYKQLREKLKSAKIQVKESIDVLEELKILVDYDEKGYLLQIFTKPMQ 341

Query:   372 DRPTIFIEIIQR 383
             DRPT+F+E+IQR
Sbjct:   342 DRPTLFLEVIQR 353

GO:0046872 "metal ion binding" evidence=IEA

GO:0009072 "aromatic amino acid family metabolic process" evidence=IEA

GO:0003868 "4-hydroxyphenylpyruvate dioxygenase activity" evidence=IEA

RGD|61974 Hpd "4-hydroxyphenylpyruvate dioxygenase" [Rattus norvegicus (taxid:10116)]

 Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
 Identities = 137/378 (36%), Positives = 195/378 (51%)

Query:    18 FVRQNPKSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLR 77
             +  + PK +R R   FH V FW  +A   A  +   +G   +A   L TG+    S++++
Sbjct:     4 YSNKGPKPERGRFLHFHSVTFWVGNAKQAASFYCNKMGFEPLAYKGLETGSREVVSHVIK 63

Query:    78 SGDLRFVFTAPYSPXXXXXXXXXXXXXXLPTFDHAACRSFAASHGLAARSIAVEVEDADV 137
              G + FV  +  +P                  DH         HG   + IA EVED + 
Sbjct:    64 QGKIVFVLCSALNPWNKEMG------------DHLV------KHGDGVKDIAFEVEDCEH 105

Query:   138 AFNTSVAHGAKPSSPP-VILDNLAVI--AEVQLYGDVVLRYVSYKDKANHLD-FLPGFE- 192
                 +   GAK    P V  D    +  A +Q YGD     V   +K N+   FLPGFE 
Sbjct:   106 IVQKARERGAKIVREPWVEEDKFGKVKFAVLQTYGDTTHTLV---EKINYTGRFLPGFEA 162

Query:   193 PTDEISSFPL--DYGIRRLDHAVGNVP--ELAPAVA-YVKSFTGFHEFAEFTAEDVGTSE 247
             PT + +  P      +  +DH VGN P  E+  A   Y+K+   FH F       V T  
Sbjct:   163 PTYKDTLLPKLPSCNLEIIDHIVGNQPDQEMESASEWYLKNLQ-FHRFWSVDDTQVHTEY 221

Query:   248 SGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLRE 307
             S L S+V+AN +E + +P+NEP  G K KSQIQ Y+++N GAGVQH+AL +EDI  T+R 
Sbjct:   222 SSLRSIVVANYEESIKMPINEPAPGRK-KSQIQEYVDYNGGAGVQHIALRTEDIITTIRH 280

Query:   308 MRKRSGVGGFEFMPSPPPTYYKNLKN--RAGDVLTDEQIKQCEELGVLVDRDDQGTLLQI 365
             +R+R    G EF+ + P +YY+ L+   +   +   E +   EEL +LVD D++G LLQI
Sbjct:   281 LRER----GMEFL-AVPSSYYRLLRENLKTSKIQVKENMDVLEELKILVDYDEKGYLLQI 335

Query:   366 FTKPVGDRPTIFIEIIQR 383
             FTKP+ DRPT+F+E+IQR
Sbjct:   336 FTKPMQDRPTLFLEVIQR 353

GO:0000139 "Golgi membrane" evidence=IDA

GO:0003868 "4-hydroxyphenylpyruvate dioxygenase activity" evidence=IEA;ISO;IDA;TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006559 "L-phenylalanine catabolic process" evidence=IEA

GO:0006572 "tyrosine catabolic process" evidence=IDA;TAS

GO:0009072 "aromatic amino acid family metabolic process" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|P32755 Hpd "4-hydroxyphenylpyruvate dioxygenase" [Rattus norvegicus (taxid:10116)]

 Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
 Identities = 137/378 (36%), Positives = 195/378 (51%)

Query:    18 FVRQNPKSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLR 77
             +  + PK +R R   FH V FW  +A   A  +   +G   +A   L TG+    S++++
Sbjct:     4 YSNKGPKPERGRFLHFHSVTFWVGNAKQAASFYCNKMGFEPLAYKGLETGSREVVSHVIK 63

Query:    78 SGDLRFVFTAPYSPXXXXXXXXXXXXXXLPTFDHAACRSFAASHGLAARSIAVEVEDADV 137
              G + FV  +  +P                  DH         HG   + IA EVED + 
Sbjct:    64 QGKIVFVLCSALNPWNKEMG------------DHLV------KHGDGVKDIAFEVEDCEH 105

Query:   138 AFNTSVAHGAKPSSPP-VILDNLAVI--AEVQLYGDVVLRYVSYKDKANHLD-FLPGFE- 192
                 +   GAK    P V  D    +  A +Q YGD     V   +K N+   FLPGFE 
Sbjct:   106 IVQKARERGAKIVREPWVEEDKFGKVKFAVLQTYGDTTHTLV---EKINYTGRFLPGFEA 162

Query:   193 PTDEISSFPL--DYGIRRLDHAVGNVP--ELAPAVA-YVKSFTGFHEFAEFTAEDVGTSE 247
             PT + +  P      +  +DH VGN P  E+  A   Y+K+   FH F       V T  
Sbjct:   163 PTYKDTLLPKLPSCNLEIIDHIVGNQPDQEMESASEWYLKNLQ-FHRFWSVDDTQVHTEY 221

Query:   248 SGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLRE 307
             S L S+V+AN +E + +P+NEP  G K KSQIQ Y+++N GAGVQH+AL +EDI  T+R 
Sbjct:   222 SSLRSIVVANYEESIKMPINEPAPGRK-KSQIQEYVDYNGGAGVQHIALRTEDIITTIRH 280

Query:   308 MRKRSGVGGFEFMPSPPPTYYKNLKN--RAGDVLTDEQIKQCEELGVLVDRDDQGTLLQI 365
             +R+R    G EF+ + P +YY+ L+   +   +   E +   EEL +LVD D++G LLQI
Sbjct:   281 LRER----GMEFL-AVPSSYYRLLRENLKTSKIQVKENMDVLEELKILVDYDEKGYLLQI 335

Query:   366 FTKPVGDRPTIFIEIIQR 383
             FTKP+ DRPT+F+E+IQR
Sbjct:   336 FTKPMQDRPTLFLEVIQR 353

GO:0046872 "metal ion binding" evidence=IEA

MGI|MGI:96213 Hpd "4-hydroxyphenylpyruvic acid dioxygenase" [Mus musculus (taxid:10090)]

 Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
 Identities = 137/375 (36%), Positives = 193/375 (51%)

Query:    21 QNPKSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGD 80
             + PK +R R   FH V FW  +A   A  +   +G   +A   L TG+    S++++ G 
Sbjct:     7 KGPKPERGRFLHFHSVTFWVGNAKQAASFYCNKMGFEPLAYRGLETGSREVVSHVIKQGK 66

Query:    81 LRFVFTAPYSPXXXXXXXXXXXXXXLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFN 140
             + FV  +  +P                  DH         HG   + IA EVED D    
Sbjct:    67 IVFVLCSALNPWNKEMG------------DHLV------KHGDGVKDIAFEVEDCDHIVQ 108

Query:   141 TSVAHGAKPSSPP-VILDNLAVI--AEVQLYGDVVLRYVSYKDKANHLD-FLPGFE-PTD 195
              +   GAK    P V  D    +  A +Q YGD     V   +K N+   FLPGFE PT 
Sbjct:   109 KARERGAKIVREPWVEQDKFGKVKFAVLQTYGDTTHTLV---EKINYTGRFLPGFEAPTY 165

Query:   196 EISSFPL--DYGIRRLDHAVGNVP--ELAPAVA-YVKSFTGFHEFAEFTAEDVGTSESGL 250
             + +  P      +  +DH VGN P  E+  A   Y+K+   FH F       V T  S L
Sbjct:   166 KDTLLPKLPRCNLEIIDHIVGNQPDQEMQSASEWYLKNLQ-FHRFWSVDDTQVHTEYSSL 224

Query:   251 NSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRK 310
              S+V+ N +E + +P+NEP  G K KSQIQ Y+++N GAGVQH+AL +EDI   +R +R+
Sbjct:   225 RSIVVTNYEESIKMPINEPAPGRK-KSQIQEYVDYNGGAGVQHIALKTEDIITAIRHLRE 283

Query:   311 RSGVGGFEFMPSPPPTYYKNLKN--RAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFTK 368
             R    G EF+ +P  +YYK L+   ++  +   E +   EEL +LVD D++G LLQIFTK
Sbjct:   284 R----GTEFLAAPS-SYYKLLRENLKSAKIQVKESMDVLEELHILVDYDEKGYLLQIFTK 338

Query:   369 PVGDRPTIFIEIIQR 383
             P+ DRPT+F+E+IQR
Sbjct:   339 PMQDRPTLFLEVIQR 353

GO:0000139 "Golgi membrane" evidence=ISO

GO:0003868 "4-hydroxyphenylpyruvate dioxygenase activity" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0005789 "endoplasmic reticulum membrane" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0006559 "L-phenylalanine catabolic process" evidence=IEA

GO:0006572 "tyrosine catabolic process" evidence=ISO

GO:0008127 "quercetin 2,3-dioxygenase activity" evidence=IEA

GO:0009072 "aromatic amino acid family metabolic process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016701 "oxidoreductase activity, acting on single donors with incorporation of molecular oxygen" evidence=IEA

GO:0016702 "oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=ISO

UNIPROTKB|Q96X22 HPD4 "4-hydroxyphenylpyruvate dioxygenase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
 Identities = 126/370 (34%), Positives = 189/370 (51%)

Query:    33 FHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPX 92
             + HV +W  +A   A  ++   GM I+A   L TG+   ASYL+   D+RFVFT+P    
Sbjct:    38 YDHVTWWVGNAKQAASYYNTLFGMKIIAYRGLETGSRYFASYLVGKEDVRFVFTSPIR-- 95

Query:    93 XXXXXXXXXXXXXLPTFDHAACRSFAA---SHGLAARSIAVEVEDADVAFNTSVAHGAKP 149
                          +   D A  +   A    HG A + +  EV++    +  +V  GA  
Sbjct:    96 ---SHVHLPEDEPISDEDRALLKEMHAHLEKHGDAVKDVCFEVDNVQGVYERAVQQGAVS 152

Query:   150 SSPPVILDNL----AVIAEVQLYGDVVLRYVSYKDKANHLDFLPGFEPTDEISSFPLDYG 205
              +PP  L +       +A +Q YGD     +S +D      FLPGF    +++  P  Y 
Sbjct:   153 IAPPKTLSDKEHGSVTMAVIQTYGDTTHTLLS-RDNFRGT-FLPGFR---DVNRQPAAYS 207

Query:   206 ------IRRLDHAVGNVP--ELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLAN 257
                   ++R+DH VGN    ++  A  + +    FH F       + T  S LNS+V+A+
Sbjct:   208 ALAPVPLQRIDHCVGNQDWDDMRAACDFYERCLSFHRFWSVDDNQISTDFSALNSIVMAS 267

Query:   258 NDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGF 317
              + +V +P+NEP  G KR SQI+ Y+  N GAGVQH+AL++ DI  T+  MR R    G 
Sbjct:   268 PNNVVKMPINEPAKGKKR-SQIEEYVTFNSGAGVQHIALLTSDIITTVEAMRSR----GV 322

Query:   318 EFMPSPPPTYYKNLKNRAGDVLTDEQIKQ-CEEL---GVLVDRDDQGTLLQIFTKPVGDR 373
             EF+   P TYY  ++ R      D ++++  + L    +L+D D+ G LLQ+FT+P+ DR
Sbjct:   323 EFI-EVPHTYYDTMRRRLKTEKRDWELQEDFDRLVRNNILIDYDEGGYLLQLFTRPLMDR 381

Query:   374 PTIFIEIIQR 383
             PT+FIEIIQR
Sbjct:   382 PTVFIEIIQR 391

GO:0005575 "cellular_component" evidence=ND

ZFIN|ZDB-GENE-040808-62 hpdb "4-hydroxyphenylpyruvate dioxygenase b" [Danio rerio (taxid:7955)]

 Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
 Identities = 134/377 (35%), Positives = 187/377 (49%)

Query:    17 NFVRQNPKSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLL 76
             +++ +  K +  +   F H+ FW  +A   A  +   LG   +A   L TG+    S+ +
Sbjct:     3 SYIDKGEKHEEGKFICFDHITFWVGNAKQAASYYCNKLGFEPLAYRGLETGSREVVSHAV 62

Query:    77 RSGDLRFVFTAPYSPXXXXXXXXXXXXXXLPTFDHAACRSFAASHGLAARSIAVEVEDAD 136
             + G + +VFT+  +P                  DH         HG   + +A  VE+ D
Sbjct:    63 KQGKIIYVFTSALNPGNKEMG------------DHLV------KHGDGVKDVAFTVENCD 104

Query:   137 VAFNTSVAHGA---KPSSPPVILDNLAVIAEVQLYGDVVLRYVSYKDKANHLDFLPGFEP 193
                  +   GA   K S           +A VQ YGD    +V  +   N L FLPGF  
Sbjct:   105 FLVEKARERGAIIIKESHAVEDKFGRVKMAVVQTYGDTTHTFVE-RTGYNGL-FLPGFHA 162

Query:   194 TDEISSF--PLDYG-IRRLDHAVGNVP--ELAPAVAYVKSFTGFHEFAEFTAEDVGTSES 248
                   F   L  G +  +DH VGN P  E+ P V + +    FH F     + + T  S
Sbjct:   163 PLFCDPFLAKLPSGKLDFIDHVVGNQPDSEMVPIVEWYQRNLLFHRFWSVDDKQLQTEYS 222

Query:   249 GLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREM 308
              L S+V+AN +E V +P+NEP  G KRKSQIQ Y+E+  GAGVQH+A+ + DI   +R +
Sbjct:   223 ALRSIVVANYEETVKMPINEPAMG-KRKSQIQEYVEYYGGAGVQHIAMNTSDIISAIRNL 281

Query:   309 RKRSGVGGFEFMPSPPPTYYKNLKNRA--GDVLTDEQIKQCEELGVLVDRDDQGTLLQIF 366
             ++R    G EFM S P TYY+ LK +     V   E +   EEL +LVD DD G LLQIF
Sbjct:   282 KER----GMEFM-SVPDTYYQQLKEKLKLSKVRIIEDLNILEELKILVDYDDNGYLLQIF 336

Query:   367 TKPVGDRPTIFIEIIQR 383
             TKPV DRPT+F+E+IQR
Sbjct:   337 TKPVQDRPTVFLEVIQR 353

GO:0016701 "oxidoreductase activity, acting on single donors with incorporation of molecular oxygen" evidence=IEA

GO:0009072 "aromatic amino acid family metabolic process" evidence=IEA

GO:0003868 "4-hydroxyphenylpyruvate dioxygenase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0046872 "metal ion binding" evidence=IEA

GO:0016702 "oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen" evidence=IEA

UNIPROTKB|F1NVJ0 HPD "4-hydroxyphenylpyruvate dioxygenase" [Gallus gallus (taxid:9031)]

 Score = 407 (148.3 bits), Expect = 1.4e-44, Sum P(2) = 1.4e-44
 Identities = 105/274 (38%), Positives = 147/274 (53%)

Query:   121 HGLAARSIAVEVEDADVAFNTSVAHGAKPSSPP-VILDNLAVI--AEVQLYGDVVLRYVS 177
             HG   + +A EVED D     +   GA     P V  D    +  A +Q YGD     V 
Sbjct:    89 HGDGVKDVAFEVEDCDFIVQKAKERGAVVVKEPWVEEDKFGKVKFAVIQTYGDTTHTLV- 147

Query:   178 YKDKANHLD-FLPGFE-PTDEISSFPL--DYGIRRLDHAVGNVPEL--APAVAYVKSFTG 231
               +K N+   FLPG+  P       P      +  +DH VGN P+L   P   + +    
Sbjct:   148 --EKLNYKGLFLPGYHAPLFRDPLLPRLPSAKLSFVDHVVGNQPDLQMVPVADWYQKNLL 205

Query:   232 FHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGV 291
             FH F     + + T  S L S+V+ N +E + +P+NEP  G KRKSQIQ Y+++  GAGV
Sbjct:   206 FHRFWSVDDKQLHTEFSALRSIVVTNYEETIKMPINEPANG-KRKSQIQEYIDYYGGAGV 264

Query:   292 QHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNR--AGDVLTDEQIKQCEE 349
             QH+AL + DI   +  +++R    G +FM   P +YY+ L+ R     +   E I + EE
Sbjct:   265 QHIALNTSDIISAITNLKQR----GMQFM-DVPSSYYQLLRERLKTAKIKVKESIDKLEE 319

Query:   350 LGVLVDRDDQGTLLQIFTKPVGDRPTIFIEIIQR 383
             L +LVD D++G LLQIFTKPV DRPT+F+E+IQR
Sbjct:   320 LKILVDFDEKGYLLQIFTKPVQDRPTVFLEVIQR 353

GO:0003868 "4-hydroxyphenylpyruvate dioxygenase activity" evidence=IEA

GO:0009072 "aromatic amino acid family metabolic process" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5EA20	HPPD_BOVIN	1, ., 1, 3, ., 1, 1, ., 2, 7	0.3631	0.8248	0.9109	yes	no
P49429	HPPD_MOUSE	1, ., 1, 3, ., 1, 1, ., 2, 7	0.3493	0.8341	0.9211	yes	no
P93836	HPPD_ARATH	1, ., 1, 3, ., 1, 1, ., 2, 7	0.7793	0.9585	0.9348	yes	no
O23920	HPPD_DAUCA	1, ., 1, 3, ., 1, 1, ., 2, 7	0.7694	0.9631	0.9457	N/A	no
Q5BKL0	HPPD_XENTR	1, ., 1, 3, ., 1, 1, ., 2, 7	0.3309	0.8317	0.9162	yes	no
O48604	HPPD_HORVU	1, ., 1, 3, ., 1, 1, ., 2, 7	0.6416	0.9308	0.9308	N/A	no
P32755	HPPD_RAT	1, ., 1, 3, ., 1, 1, ., 2, 7	0.3444	0.8410	0.9287	yes	no
P32754	HPPD_HUMAN	1, ., 1, 3, ., 1, 1, ., 2, 7	0.3556	0.8433	0.9312	yes	no
Q4WHU1	HPPD1_ASPFU	1, ., 1, 3, ., 1, 1, ., 2, 7	0.3366	0.8294	0.8933	yes	no
Q76NV5	HPPD_DICDI	1, ., 1, 3, ., 1, 1, ., 2, 7	0.3217	0.8064	0.9536	yes	no
Q9S2F4	HPPD_STRCO	1, ., 1, 3, ., 1, 1, ., 2, 7	0.3620	0.8317	0.9475	yes	no
Q53586	HPPD_STRAW	1, ., 1, 3, ., 1, 1, ., 2, 7	0.3596	0.8317	0.9475	yes	no
Q02110	HPPD_PIG	1, ., 1, 3, ., 1, 1, ., 2, 7	0.3245	0.8110	0.8956	yes	no
Q6CDR5	HPPD_YARLI	1, ., 1, 3, ., 1, 1, ., 2, 7	0.3251	0.8087	0.8908	yes	no
Q9ARF9	HPPD_SOLSC	1, ., 1, 3, ., 1, 1, ., 2, 7	0.7511	0.9631	0.9587	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.13.11.27	0.979
3rd Layer	1.13.11	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	434
PLN02875	398	PLN02875, PLN02875, 4-hydroxyphenylpyruvate dioxyg	0.0
TIGR01263	353	TIGR01263, 4HPPD, 4-hydroxyphenylpyruvate dioxygen	1e-136
cd07250	191	cd07250, HPPD_C_like, C-terminal domain of 4-hydro	4e-86
COG3185	363	COG3185, COG3185, 4-hydroxyphenylpyruvate dioxygen	1e-56
cd08342	136	cd08342, HPPD_N_like, N-terminal domain of 4-hydro	9e-39
pfam00903	120	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resist	3e-06
cd07249	128	cd07249, MMCE, Methylmalonyl-CoA epimerase (MMCE)	2e-04
TIGR03081	128	TIGR03081, metmalonyl_epim, methylmalonyl-CoA epim	7e-04

>gnl|CDD|215472 PLN02875, PLN02875, 4-hydroxyphenylpyruvate dioxygenase

 Score =  769 bits (1988), Expect = 0.0
 Identities = 300/399 (75%), Positives = 331/399 (82%), Gaps = 7/399 (1%)

Query: 33  FHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPS 92
           FHHVEFWC DATNTARRFSWGLGMP+VAKSDL+TGNT +ASYLLRSGDL F+FTAPYSP 
Sbjct: 1   FHHVEFWCGDATNTARRFSWGLGMPLVAKSDLTTGNTTYASYLLRSGDLVFLFTAPYSPK 60

Query: 93  ISDAADAGNSSASLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSP 152
           I    D   S+A  P+F   A R F A HGLA R++ V VEDA+ AF TSVAHGA+P   
Sbjct: 61  IGAGDDDPASTAPHPSFSSDAARRFFAKHGLAVRAVGVLVEDAEEAFRTSVAHGARPVLE 120

Query: 153 PVILDN-----LAVIAEVQLYGDVVLRYVSYKDKANHLDFLPGFEPTDEISSFPLDYGIR 207
           P  L +      AVIAEV+LYGDVVLRYVSYK       FLPG+EP +  SSFPLDYG+R
Sbjct: 121 PTELGDEASGGKAVIAEVELYGDVVLRYVSYKGFDGA-KFLPGYEPVESSSSFPLDYGLR 179

Query: 208 RLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMN 267
           RLDHAVGNVP L PAV Y+  FTGFHEFAEFTAEDVGT +SGLNS+VLA+N+EMVLLP+N
Sbjct: 180 RLDHAVGNVPNLLPAVNYIAGFTGFHEFAEFTAEDVGTVDSGLNSMVLASNNEMVLLPLN 239

Query: 268 EPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTY 327
           EP FGTKRKSQIQTYLEHNEG G+QHLAL S+DIF TLREMR RS +GGFEFMP PPPTY
Sbjct: 240 EPTFGTKRKSQIQTYLEHNEGPGLQHLALKSDDIFGTLREMRARSHIGGFEFMPPPPPTY 299

Query: 328 YKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFTKPVGDRPTIFIEIIQRVGCM 387
           YKNLK R GDVLT+EQIK+CEELG+LVD+DDQG LLQIFTKPVGDRPT+F+EIIQR+GCM
Sbjct: 300 YKNLKKRVGDVLTEEQIKECEELGILVDKDDQGVLLQIFTKPVGDRPTLFLEIIQRIGCM 359

Query: 388 LKDEEGKTY-QKGGCGGFGKGNFSELFKSIEEYEKTLGA 425
            KDEEGK Y Q GGCGGFGKGNFSELFKSIEEYEKTL A
Sbjct: 360 EKDEEGKEYEQAGGCGGFGKGNFSELFKSIEEYEKTLDA 398

Length = 398

>gnl|CDD|233334 TIGR01263, 4HPPD, 4-hydroxyphenylpyruvate dioxygenase

 Score =  393 bits (1012), Expect = e-136
 Identities = 155/399 (38%), Positives = 201/399 (50%), Gaps = 55/399 (13%)

Query: 32  RFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSP 91
            F  VEF+  DA   A  +    G   VAK    TG+   AS++LR G + FV TAPYS 
Sbjct: 2   GFDFVEFYVGDAKQAAYYYFTRFGFEKVAKE---TGHREKASHVLRQGQINFVLTAPYSS 58

Query: 92  SISDAADAGNSSASLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSS 151
             S AAD                  FAA HG   + +A  V+DA  AF  +V  GA+P  
Sbjct: 59  D-SPAAD------------------FAAKHGDGVKDVAFRVDDAAAAFEAAVERGAEPVQ 99

Query: 152 PPVILDNLAV-IAEVQLYGDVVLRYVSYKDKANHLDFLPGF---EPTDEISSFPLDYGIR 207
            PV LD  AV +A ++  GDVV   V          F PGF        +   P   G+ 
Sbjct: 100 APVELDEGAVTLATIKGIGDVVHTLVDRGGYKG--SFYPGFFESLLDAALHEPPPGVGLI 157

Query: 208 RLDHAVGNVP--ELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLP 265
            +DH VGNV   ++ P   + +   GF E   F   D+ T  S LNS+V+A+ D  V +P
Sbjct: 158 AIDHLVGNVYRGQMEPWAEFYEKIFGFREIRSF---DIKTEYSALNSIVMASPDGKVKIP 214

Query: 266 MNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPP 325
           +NEP    K KSQI+ +LE   GAGVQH+AL ++DI RT+R +R R    G EF+   P 
Sbjct: 215 LNEPA-SGKDKSQIEEFLEFYNGAGVQHIALNTDDIVRTVRALRAR----GVEFLD-TPD 268

Query: 326 TYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFTKPVGDRPTIFIEIIQRVG 385
           TYY  L  R G     E +    EL +L+D D+ G LLQIFTKP+ DR T+F EIIQR G
Sbjct: 269 TYYDLLGERLGGH-VKEDLDTLRELNILIDGDEDGYLLQIFTKPLQDRGTLFFEIIQRKG 327

Query: 386 CMLKDEEGKTYQKGGCGGFGKGNFSELFKSIEEYEKTLG 424
                            GFG+GNF  LF++IE  ++  G
Sbjct: 328 AG---------------GFGEGNFKALFEAIEREQERRG 351

This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PMID:8000039). In some bacterial species, this enzyme has been studied as a hemolysin [Energy metabolism, Amino acids and amines]. Length = 353

>gnl|CDD|176673 cd07250, HPPD_C_like, C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS)

 Score =  260 bits (667), Expect = 4e-86
 Identities = 105/215 (48%), Positives = 129/215 (60%), Gaps = 26/215 (12%)

Query: 206 IRRLDHAVGNVP--ELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVL 263
           + R+DH VGNVP  E+   V + +   GFH F  F  ED     SGL S VLA+ D  + 
Sbjct: 1   LTRIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDP---YSGLRSRVLASPDGKIR 57

Query: 264 LPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSP 323
           +P+NEP  G KRKSQIQ +LE+  GAGVQH+AL ++DIF T+  +R R    G EF+P  
Sbjct: 58  IPLNEPASG-KRKSQIQEFLEYYGGAGVQHIALATDDIFATVAALRAR----GVEFLP-I 111

Query: 324 PPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFTKPVGDRPTIFIEIIQR 383
           P  YY +L+ R   +L DE +    ELG+LVDRDD G LLQIFTKPV DRPT F EIIQR
Sbjct: 112 PDNYYDDLEARLDGILVDEDLDTLRELGILVDRDDGGYLLQIFTKPVFDRPTFFFEIIQR 171

Query: 384 VGCMLKDEEGKTYQKGGCGGFGKGNFSELFKSIEE 418
                           G  GFG GNF  LF++IE 
Sbjct: 172 R---------------GYTGFGAGNFKALFEAIER 191

HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, substrates, do not use alpha-ketoglutarate, and incorporate both atoms of dioxygen into the aromatic product. Both HPPD and HmaS exhibit duplicate beta barrel topology in their N- and C-terminal domains which share sequence similarity, suggestive of a gene duplication. Each protein has only one catalytic site located in at the C-terminal domain. This HPPD_C_like domain represents the C-terminal domain. Length = 191

>gnl|CDD|225726 COG3185, COG3185, 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]

 Score =  190 bits (485), Expect = 1e-56
 Identities = 116/405 (28%), Positives = 169/405 (41%), Gaps = 63/405 (15%)

Query: 29  RVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAP 88
             + F  VEF   D           LG   VAK   S   T     L R GD+  V    
Sbjct: 19  GTDGFEFVEFAVPDPQEALGALLGQLGFTAVAKH-RSKAVT-----LYRQGDINLV---- 68

Query: 89  YSPSISDAADAGNSSASLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAK 148
               ++   D+            AA   F   HG +A ++A  V+DA+ A   ++A GA+
Sbjct: 69  ----VNAEPDS-----------FAA--EFLDKHGPSACAMAFRVDDAEQALARALALGAR 111

Query: 149 PSSPPVILDNLAVIAEVQLYGDVVLRYVSYKDKANHLDFLPGFEPTDEISSFPLDYGIRR 208
                +    + + A ++  G  +L +V          +   FEP           G+  
Sbjct: 112 TIDTEIGAGEVDIPA-IRGIGGSLLYFVDRYGG--RSIYDVEFEPNGA-QGASGGVGLTA 167

Query: 209 LDHAVGNVP--ELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPM 266
           +DH   NV   ++   V + +S  GF E   F   D+    +GL S  + +    V LP+
Sbjct: 168 IDHLTHNVKAGQMDTWVLFYESLFGFREIQYF---DIPGPITGLRSRAMVSPCGKVRLPL 224

Query: 267 NEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPT 326
           NE       KSQI  +L    G G+QH+A  ++DI+ T+  +R+R    G +F+P  P T
Sbjct: 225 NES---ADDKSQIGEFLREYRGEGIQHIAFGTDDIYATVAALRER----GVKFLP-IPET 276

Query: 327 YYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGT-LLQIFTKPVGDRPTIFIEIIQRVG 385
           YY +L  R    L  E +    EL +L D D  G  LLQIFT+        F EII+R  
Sbjct: 277 YYDDLDARFP--LHGEFLDALRELEILYDGDGGGGELLQIFTRTFI--GPFFFEIIER-- 330

Query: 386 CMLKDEEGKTYQKGGCGGFGKGNFSELFKSIEEYEKTLGAKPVAE 430
                       + G  GFG+GNF  LF+SIE+ +   G    A 
Sbjct: 331 ------------RKGYQGFGEGNFKALFESIEQDQIRRGVLRAAL 363

Length = 363

>gnl|CDD|176690 cd08342, HPPD_N_like, N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS)

 Score =  136 bits (344), Expect = 9e-39
 Identities = 55/161 (34%), Positives = 67/161 (41%), Gaps = 25/161 (15%)

Query: 33  FHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPS 92
           F HVEF+  +A   A  FS  LG   VA           ASYLLR GD+ FV  +P +  
Sbjct: 1   FDHVEFYVGNAKQLASWFSTKLGFEPVAYHGSE----DKASYLLRQGDINFVLNSPLNS- 55

Query: 93  ISDAADAGNSSASLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSP 152
                              A    F   HG     +A  V+DA  A+  +VA GAKP   
Sbjct: 56  ------------------FAPVADFLEKHGDGVCDVAFRVDDAAAAYERAVARGAKPVQE 97

Query: 153 PVILDNLAVIAEVQLYGDVVLRYVSYKDKANHLDFLPGFEP 193
           PV       IA ++ YGD +   V  K       FLPGFEP
Sbjct: 98  PVEEPGELKIAAIKGYGDSLHTLVDRKGYKGP--FLPGFEP 136

HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, substrates, do not use alpha-ketoglutarate, and incorporate both atoms of dioxygen into the aromatic product. Both HPPD and HmaS exhibit duplicate beta barrel topology in their N- and C-terminal domains which share sequence similarity, suggestive of a gene duplication. Each protein has only one catalytic site located in at the C-terminal domain. This HPPD_N_like domain represents the N-terminal domain. Length = 136

>gnl|CDD|216182 pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily

 Score = 45.9 bits (109), Expect = 3e-06
 Identities = 22/125 (17%), Positives = 38/125 (30%), Gaps = 20/125 (16%)

Query: 208 RLDHAVGNVPELAPAVA-YVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPM 266
           R+DH    V +L  ++  Y     GF        E+V   E  L S        ++ L +
Sbjct: 1   RIDHVALRVGDLEKSLDFYTDVL-GFKL-----VEEVDDGEGPLRSAFFTAGGRVLELLL 54

Query: 267 NEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPT 326
           NE                   G  +  +A   +D+      ++      G E +  P   
Sbjct: 55  NETP---------PPAAAGFGGHHIAFIAFSVDDVDAAYDRLKAA----GVEIVREPGRH 101

Query: 327 YYKNL 331
            +   
Sbjct: 102 GWGGR 106

Length = 120

>gnl|CDD|211350 cd07249, MMCE, Methylmalonyl-CoA epimerase (MMCE)

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 20/113 (17%)

Query: 216 VPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEM---VLLPMNEPVFG 272
           VP+L  A+ + +   G   +          SE G+  +       +   ++ P+++    
Sbjct: 8   VPDLEAALKFYRDVLGVGPWEREEVP----SEQGV-RLAFLGLGNVQIELIEPLDDD--- 59

Query: 273 TKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPP 325
               S I  +LE   G G+ H+A   +DI   L  ++ +    G   +   P 
Sbjct: 60  ----SPIAKFLEKR-GEGLHHIAFEVDDIDAALARLKAQ----GVRLLQEGPR 103

MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases. Length = 128

>gnl|CDD|213772 TIGR03081, metmalonyl_epim, methylmalonyl-CoA epimerase

 Score = 39.2 bits (92), Expect = 7e-04
 Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 15/106 (14%)

Query: 208 RLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLA-NNDEMVLL-P 265
           R+DH    VP+L  A  + +   G        +E     E G+  V +A  N ++ LL P
Sbjct: 1   RIDHVGIAVPDLEEAAKFYEDVLGAQV-----SEIEELPEQGVKVVFIALGNTKVELLEP 55

Query: 266 MNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKR 311
           + E        S I  +LE N G G+ H+A+  +DI   L  ++++
Sbjct: 56  LGE-------DSPIAKFLEKNGG-GIHHIAIEVDDIEAALETLKEK 93

Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer. Length = 128

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	434
PLN02875	398	4-hydroxyphenylpyruvate dioxygenase	100.0
KOG0638	381	consensus 4-hydroxyphenylpyruvate dioxygenase [Ami	100.0
TIGR01263	353	4HPPD 4-hydroxyphenylpyruvate dioxygenase. This pr	100.0
COG3185	363	4-hydroxyphenylpyruvate dioxygenase and related he	100.0
cd07250	191	HPPD_C_like C-terminal domain of 4-hydroxyphenylpy	100.0
PF14696	139	Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, H	99.9
TIGR03211	303	catechol_2_3 catechol 2,3 dioxygenase. Members of	99.85
TIGR02295	294	HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. T	99.84
PLN02300	286	lactoylglutathione lyase	99.82
TIGR03213	286	23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase	99.82
cd08342	136	HPPD_N_like N-terminal domain of 4-hydroxyphenylpy	99.77
PF13669	109	Glyoxalase_4: Glyoxalase/Bleomycin resistance prot	99.5
cd08353	142	Glo_EDI_BRP_like_7 This conserved domain belongs t	99.49
cd08342	136	HPPD_N_like N-terminal domain of 4-hydroxyphenylpy	99.48
cd07250	191	HPPD_C_like C-terminal domain of 4-hydroxyphenylpy	99.46
cd08353	142	Glo_EDI_BRP_like_7 This conserved domain belongs t	99.42
TIGR01263	353	4HPPD 4-hydroxyphenylpyruvate dioxygenase. This pr	99.36
PLN02367	233	lactoylglutathione lyase	99.35
TIGR03081	128	metmalonyl_epim methylmalonyl-CoA epimerase. Membe	99.35
PF13669	109	Glyoxalase_4: Glyoxalase/Bleomycin resistance prot	99.35
cd07249	128	MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, als	99.34
TIGR03081	128	metmalonyl_epim methylmalonyl-CoA epimerase. Membe	99.34
TIGR03645	162	glyox_marine lactoylglutathione lyase family prote	99.33
PLN03042	185	Lactoylglutathione lyase; Provisional	99.32
PF00903	128	Glyoxalase: Glyoxalase/Bleomycin resistance protei	99.27
cd07243	143	2_3_CTD_C C-terminal domain of catechol 2,3-dioxyg	99.24
PLN02875	398	4-hydroxyphenylpyruvate dioxygenase	99.24
PRK11478	129	putative lyase; Provisional	99.23
cd07257	153	THT_oxygenase_C The C-terminal domain of 2,4,5-Tri	99.23
PLN02367	233	lactoylglutathione lyase	99.21
PLN03042	185	Lactoylglutathione lyase; Provisional	99.19
PRK11478	129	putative lyase; Provisional	99.19
cd07233	121	Glyoxalase_I Glyoxalase I catalyzes the isomerizat	99.18
cd08352	125	Glo_EDI_BRP_like_1 This conserved domain belongs t	99.17
cd08360	134	MhqB_like_C C-terminal domain of Burkholderia sp.	99.16
cd09014	166	BphC-JF8_C_like C-terminal, catalytic, domain of B	99.16
cd07237	154	BphC1-RGP6_C_like C-terminal domain of 2,3-dihydro	99.13
cd07249	128	MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, als	99.12
cd08352	125	Glo_EDI_BRP_like_1 This conserved domain belongs t	99.09
cd07241	125	Glo_EDI_BRP_like_3 This conserved domain belongs t	99.08
cd08361	124	PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cuma	99.08
cd08347	157	PcpA_C_like C-terminal domain of Sphingobium chlor	99.08
TIGR00068	150	glyox_I lactoylglutathione lyase. Glyoxylase I is	99.08
cd07256	161	HPCD_C_class_II C-terminal domain of 3,4-dihydroxy	99.07
PRK04101	139	fosfomycin resistance protein FosB; Provisional	99.07
cd08364	131	FosX FosX, a fosfomycin resistance protein, cataly	99.06
TIGR03645	162	glyox_marine lactoylglutathione lyase family prote	99.06
cd07265	122	2_3_CTD_N N-terminal domain of catechol 2,3-dioxyg	99.05
cd07252	120	BphC1-RGP6_N_like N-terminal domain of 2,3-dihydro	99.05
cd07242	128	Glo_EDI_BRP_like_6 This conserved domain belongs t	99.04
PF00903	128	Glyoxalase: Glyoxalase/Bleomycin resistance protei	99.04
cd07239	144	BphC5-RK37_C_like C-terminal, catalytic, domain of	99.03
PLN02300	286	lactoylglutathione lyase	99.01
cd07233	121	Glyoxalase_I Glyoxalase I catalyzes the isomerizat	99.01
PRK04101	139	fosfomycin resistance protein FosB; Provisional	98.99
TIGR00068	150	glyox_I lactoylglutathione lyase. Glyoxylase I is	98.99
cd07264	125	Glo_EDI_BRP_like_15 This conserved domain belongs	98.98
cd07242	128	Glo_EDI_BRP_like_6 This conserved domain belongs t	98.98
cd07244	121	FosA FosA, a Fosfomycin resistance protein, cataly	98.98
cd07241	125	Glo_EDI_BRP_like_3 This conserved domain belongs t	98.98
cd09013	121	BphC-JF8_N_like N-terminal, non-catalytic, domain	98.97
cd07246	122	Glo_EDI_BRP_like_8 This conserved domain belongs t	98.95
cd08351	123	ChaP_like ChaP, an enzyme involved in the biosynth	98.94
cd07255	125	Glo_EDI_BRP_like_12 This conserved domain belongs	98.94
cd07253	125	Glo_EDI_BRP_like_2 This conserved domain belongs t	98.94
cd07245	114	Glo_EDI_BRP_like_9 This conserved domain belongs t	98.94
cd07263	119	Glo_EDI_BRP_like_16 This conserved domain belongs	98.92
KOG2944	170	consensus Glyoxalase [Carbohydrate transport and m	98.92
cd08364	131	FosX FosX, a fosfomycin resistance protein, cataly	98.91
PRK10291	129	glyoxalase I; Provisional	98.91
cd07253	125	Glo_EDI_BRP_like_2 This conserved domain belongs t	98.91
cd08346	126	PcpA_N_like N-terminal domain of Sphingobium chlor	98.9
cd07267	113	THT_Oxygenase_N N-terminal domain of 2,4,5-trihydr	98.89
cd08363	131	FosB FosB, a fosfomycin resistance protein, cataly	98.89
cd07263	119	Glo_EDI_BRP_like_16 This conserved domain belongs	98.88
KOG2943	299	consensus Predicted glyoxalase [Carbohydrate trans	98.88
cd08359	119	Glo_EDI_BRP_like_22 This conserved domain belongs	98.87
cd07258	141	PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cuma	98.87
cd07243	143	2_3_CTD_C C-terminal domain of catechol 2,3-dioxyg	98.87
cd08363	131	FosB FosB, a fosfomycin resistance protein, cataly	98.86
cd09013	121	BphC-JF8_N_like N-terminal, non-catalytic, domain	98.85
cd07247	114	SgaA_N_like N-terminal domain of Streptomyces gris	98.85
cd07240	117	ED_TypeI_classII_N N-terminal domain of type I, cl	98.84
cd07266	121	HPCD_N_class_II N-terminal domain of 3,4-dihydroxy	98.84
cd08343	131	ED_TypeI_classII_C C-terminal domain of type I, cl	98.83
cd08347	157	PcpA_C_like C-terminal domain of Sphingobium chlor	98.83
cd06587	112	Glo_EDI_BRP_like This domain superfamily is found	98.83
cd08348	134	BphC2-C3-RGP6_C_like The single-domain 2,3-dihydro	98.81
cd08355	122	Glo_EDI_BRP_like_14 This conserved domain belongs	98.81
cd08346	126	PcpA_N_like N-terminal domain of Sphingobium chlor	98.81
PRK06724	128	hypothetical protein; Provisional	98.8
cd07245	114	Glo_EDI_BRP_like_9 This conserved domain belongs t	98.8
cd09014	166	BphC-JF8_C_like C-terminal, catalytic, domain of B	98.8
cd08362	120	BphC5-RrK37_N_like N-terminal, non-catalytic, doma	98.8
COG2514	265	Predicted ring-cleavage extradiol dioxygenase [Gen	98.8
cd07257	153	THT_oxygenase_C The C-terminal domain of 2,4,5-Tri	98.8
cd08344	112	MhqB_like_N N-terminal domain of MhqB, a type I ex	98.78
TIGR03213	286	23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase	98.78
PF13468	175	Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.	98.78
cd08345	113	Fosfomycin_RP Fosfomycin resistant protein; inhibi	98.78
cd07240	117	ED_TypeI_classII_N N-terminal domain of type I, cl	98.78
cd07244	121	FosA FosA, a Fosfomycin resistance protein, cataly	98.77
cd08360	134	MhqB_like_C C-terminal domain of Burkholderia sp.	98.76
PRK10291	129	glyoxalase I; Provisional	98.76
PRK06724	128	hypothetical protein; Provisional	98.75
cd08362	120	BphC5-RrK37_N_like N-terminal, non-catalytic, doma	98.74
cd07265	122	2_3_CTD_N N-terminal domain of catechol 2,3-dioxyg	98.74
cd08359	119	Glo_EDI_BRP_like_22 This conserved domain belongs	98.74
cd08351	123	ChaP_like ChaP, an enzyme involved in the biosynth	98.74
cd07267	113	THT_Oxygenase_N N-terminal domain of 2,4,5-trihydr	98.73
COG3185	363	4-hydroxyphenylpyruvate dioxygenase and related he	98.73
cd08358	127	Glo_EDI_BRP_like_21 This conserved domain belongs	98.73
cd08343	131	ED_TypeI_classII_C C-terminal domain of type I, cl	98.72
cd09011	120	Glo_EDI_BRP_like_23 This conserved domain belongs	98.7
cd07254	120	Glo_EDI_BRP_like_20 This conserved domain belongs	98.7
cd08345	113	Fosfomycin_RP Fosfomycin resistant protein; inhibi	98.69
cd08361	124	PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cuma	98.68
cd08349	112	BLMA_like Bleomycin binding protein (BLMA) and sim	98.68
cd07237	154	BphC1-RGP6_C_like C-terminal domain of 2,3-dihydro	98.68
cd07256	161	HPCD_C_class_II C-terminal domain of 3,4-dihydroxy	98.67
cd07255	125	Glo_EDI_BRP_like_12 This conserved domain belongs	98.67
cd06587	112	Glo_EDI_BRP_like This domain superfamily is found	98.66
cd07247	114	SgaA_N_like N-terminal domain of Streptomyces gris	98.65
cd07235	122	MRD Mitomycin C resistance protein (MRD). Mitomyci	98.64
cd08354	122	Glo_EDI_BRP_like_13 This conserved domain belongs	98.64
cd08358	127	Glo_EDI_BRP_like_21 This conserved domain belongs	98.63
cd07262	123	Glo_EDI_BRP_like_19 This conserved domain belongs	98.61
TIGR02295	294	HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. T	98.61
cd07239	144	BphC5-RK37_C_like C-terminal, catalytic, domain of	98.61
cd07266	121	HPCD_N_class_II N-terminal domain of 3,4-dihydroxy	98.6
cd07238	112	Glo_EDI_BRP_like_5 This conserved domain belongs t	98.59
cd08354	122	Glo_EDI_BRP_like_13 This conserved domain belongs	98.59
cd08350	120	BLMT_like BLMT, a bleomycin resistance protein enc	98.59
PF12681	108	Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B	98.58
cd07252	120	BphC1-RGP6_N_like N-terminal domain of 2,3-dihydro	98.58
cd07254	120	Glo_EDI_BRP_like_20 This conserved domain belongs	98.57
cd09012	124	Glo_EDI_BRP_like_24 This conserved domain belongs	98.57
cd07264	125	Glo_EDI_BRP_like_15 This conserved domain belongs	98.57
cd07262	123	Glo_EDI_BRP_like_19 This conserved domain belongs	98.55
cd08348	134	BphC2-C3-RGP6_C_like The single-domain 2,3-dihydro	98.55
TIGR03211	303	catechol_2_3 catechol 2,3 dioxygenase. Members of	98.55
cd08355	122	Glo_EDI_BRP_like_14 This conserved domain belongs	98.54
cd08357	125	Glo_EDI_BRP_like_18 This conserved domain belongs	98.49
cd08356	113	Glo_EDI_BRP_like_17 This conserved domain belongs	98.49
cd07238	112	Glo_EDI_BRP_like_5 This conserved domain belongs t	98.48
cd07258	141	PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cuma	98.46
cd07246	122	Glo_EDI_BRP_like_8 This conserved domain belongs t	98.44
cd09011	120	Glo_EDI_BRP_like_23 This conserved domain belongs	98.44
cd08344	112	MhqB_like_N N-terminal domain of MhqB, a type I ex	98.44
KOG0638	381	consensus 4-hydroxyphenylpyruvate dioxygenase [Ami	98.42
cd08357	125	Glo_EDI_BRP_like_18 This conserved domain belongs	98.41
cd07235	122	MRD Mitomycin C resistance protein (MRD). Mitomyci	98.41
cd09012	124	Glo_EDI_BRP_like_24 This conserved domain belongs	98.31
cd07261	114	Glo_EDI_BRP_like_11 This conserved domain belongs	98.25
cd07261	114	Glo_EDI_BRP_like_11 This conserved domain belongs	98.24
cd08356	113	Glo_EDI_BRP_like_17 This conserved domain belongs	98.23
cd07251	121	Glo_EDI_BRP_like_10 This conserved domain belongs	98.16
PF12681	108	Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B	98.13
cd08349	112	BLMA_like Bleomycin binding protein (BLMA) and sim	98.12
PF14696	139	Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, H	98.08
cd08350	120	BLMT_like BLMT, a bleomycin resistance protein enc	98.08
cd07251	121	Glo_EDI_BRP_like_10 This conserved domain belongs	98.03
PF13468	175	Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.	97.91
KOG2944	170	consensus Glyoxalase [Carbohydrate transport and m	97.83
cd06588	128	PhnB_like Escherichia coli PhnB and similar protei	97.81
COG2764	136	PhnB Uncharacterized protein conserved in bacteria	97.76
COG0346	138	GloA Lactoylglutathione lyase and related lyases [	97.56
COG3324	127	Predicted enzyme related to lactoylglutathione lya	97.36
COG2514	265	Predicted ring-cleavage extradiol dioxygenase [Gen	97.31
KOG2943	299	consensus Predicted glyoxalase [Carbohydrate trans	97.1
COG3607	133	Predicted lactoylglutathione lyase [General functi	97.0
COG3565	138	Predicted dioxygenase of extradiol dioxygenase fam	96.74
COG3324	127	Predicted enzyme related to lactoylglutathione lya	96.46
PRK10148	147	hypothetical protein; Provisional	96.38
cd06588	128	PhnB_like Escherichia coli PhnB and similar protei	96.08
COG0346	138	GloA Lactoylglutathione lyase and related lyases [	95.89
PRK01037	357	trmD tRNA (guanine-N(1)-)-methyltransferase/unknow	95.72
PF14506	125	CppA_N: CppA N-terminal; PDB: 3E0R_D.	95.39
PF07063	302	DUF1338: Domain of unknown function (DUF1338); Int	94.87
COG3565	138	Predicted dioxygenase of extradiol dioxygenase fam	94.71
PF14506	125	CppA_N: CppA N-terminal; PDB: 3E0R_D.	92.08
COG2764	136	PhnB Uncharacterized protein conserved in bacteria	90.45
PF06983	116	3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltrans	89.24

>PLN02875 4-hydroxyphenylpyruvate dioxygenase

Probab=100.00  E-value=4.9e-94  Score=724.36  Aligned_cols=388  Identities=77%  Similarity=1.228  Sum_probs=340.3

Q ss_pred             EEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCChh
Q 013898           33 FHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHA  112 (434)
Q Consensus        33 l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~  112 (434)
                      +|||+|||+|+++++.||+..|||+.+++.+++++++..+++++|||+|+|+|++|+.+......+...++.+.+.++.+
T Consensus         1 ~dhvef~v~da~~~~~~f~~~~GF~~~a~~~~~tg~~~~~s~~~r~g~i~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (398)
T PLN02875          1 FHHVEFWCGDATNTARRFSWGLGMPLVAKSDLTTGNTTYASYLLRSGDLVFLFTAPYSPKIGAGDDDPASTAPHPSFSSD   80 (398)
T ss_pred             CeEEEEEcCCHHHHHHHHHHhcCCCeEeecCCCCCCcceEEEEEEeCCEEEEEeCCCCCccccccccccccccccccCcH
Confidence            69999999999999999999999999999999999988999999999999999999754210000001122344555567


Q ss_pred             HHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccC-----ceEEEEEEecCCeEEEEeeccCcCCCCC-
Q 013898          113 ACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDN-----LAVIAEVQLYGDVVLRYVSYKDKANHLD-  186 (434)
Q Consensus       113 ~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~-----~~~~~~i~~~Gg~~~~fvd~~~~~~~g~-  186 (434)
                      ++++|+++||+|||+|||+|+|+++++++|+++|++++.+|+...+     .+.+|+|++||+++|+||++  ..|.+. 
T Consensus        81 ~a~~~~~~HG~gV~dvaf~V~Da~~a~~~A~~~Ga~~~~~~~~~~d~~~~g~~~~~~I~~~G~~~h~lVdr--~~~~~~~  158 (398)
T PLN02875         81 AARRFFAKHGLAVRAVGVLVEDAEEAFRTSVAHGARPVLEPTELGDEASGGKAVIAEVELYGDVVLRYVSY--KGFDGAK  158 (398)
T ss_pred             HHHHHHHHcCCeeeEEEEEECCHHHHHHHHHHCCCeeccCCccccccccCceEEEEEEEccCCcEEEEEcc--CCCCCCc
Confidence            8999999999999999999999999999999999999999887644     37999999999999999996  346666 


Q ss_pred             CCCCCccCCCCCCCCcccceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEe
Q 013898          187 FLPGFEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPM  266 (434)
Q Consensus       187 ~~p~f~~~~~~~~~~~~~~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L  266 (434)
                      |+|+|.+.+.....+.+.++++||||+++|++|++|+.||+++|||+..++++.+++++.++|++|++|.++++.++|+|
T Consensus       159 f~p~f~~~~~~~~~~~~~gl~~IDHi~iaV~~ld~a~~fY~~vlGf~~~~~~d~~~i~~~~sgl~S~vl~sp~g~v~ipL  238 (398)
T PLN02875        159 FLPGYEPVESSSSFPLDYGLRRLDHAVGNVPNLLPAVNYIAGFTGFHEFAEFTAEDVGTVDSGLNSMVLASNNEMVLLPL  238 (398)
T ss_pred             cCCCcccccccccCCCCCCcceeCcceechhhHHHHHHHHHHhcCCeeeeeeccccccccccceEEEEEEcCCCcEEEEe
Confidence            99999765432111234569999999999999999999999999999999887777777889999999999999999999


Q ss_pred             cccCCCCCCCchHHHHHhhcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHH
Q 013898          267 NEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQ  346 (434)
Q Consensus       267 ~e~~~g~~~~s~i~~fl~~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~  346 (434)
                      |+|..+++++|||++||++|+|+|||||||.|+||.+++++|++++..+|++||++||++||++|.+|++.++.+++|++
T Consensus       239 nEP~~~~~~~SqI~eFL~~~~G~GIQHIAl~tdDI~~av~~Lra~~~~~Gv~fL~~Pp~~YYd~L~~R~~~~l~~e~~~~  318 (398)
T PLN02875        239 NEPTFGTKRKSQIQTYLEHNEGPGLQHLALKSDDIFGTLREMRARSHIGGFEFMPPPPPTYYKNLKKRVGDVLTEEQIKE  318 (398)
T ss_pred             ccCCCCCCCcChHHHHHHhcCCCCeeEEEeecCCHHHHHHHHHhccccCCeecCCCChHHHHHHHHHHhccCCChhhHHH
Confidence            99975334689999999999999999999999999999999999633349999998768999999999975578999999


Q ss_pred             HHhcCeEEecCCCceEEEEEccccCCCCCeEEEEEEeeccccccccCc-ccccCCCCCcCCccHHHHHHHHHHHHHH
Q 013898          347 CEELGVLVDRDDQGTLLQIFTKPVGDRPTIFIEIIQRVGCMLKDEEGK-TYQKGGCGGFGKGNFSELFKSIEEYEKT  422 (434)
Q Consensus       347 l~~~~iL~D~d~~g~llqifT~~~~~r~~~FfEiIqR~g~~~~~~~~~-~~~~~~~~GFG~gN~~aLf~aie~~~~~  422 (434)
                      |++++||||+|++||||||||+|+++|||||||||||+||||+|++|| +.++.|++|||+|||||||||||+++++
T Consensus       319 L~~~~ILvD~d~~G~LLQIFTkp~~~rpt~FfEiIQR~g~~~~~~~~~~~~~~~g~~GFG~GNfkALFeaiE~~~q~  395 (398)
T PLN02875        319 CEELGILVDKDDQGVLLQIFTKPVGDRPTLFLEIIQRIGCMEKDEEGKEYEQAGGCGGFGKGNFSELFKSIEEYEKT  395 (398)
T ss_pred             HHHcCEEEecCCCceEEEEeccccCCCCceEEEEEEecCccccccccccccccccCCCcCcccHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999 8899999999999999999999999544

>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]

Probab=100.00  E-value=2.8e-90  Score=653.60  Aligned_cols=364  Identities=45%  Similarity=0.715  Sum_probs=338.2

Q ss_pred             ccCCCCCCCCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCccccc
Q 013898           20 RQNPKSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADA   99 (434)
Q Consensus        20 ~~~~~~~~~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~   99 (434)
                      ++|++++..++.++|||+|+|+|++++++||+..|||++.+++++|||++..+++++|||++.|++++++++..      
T Consensus         5 ~k~~k~~~g~~l~f~Hi~F~vgna~q~A~~y~~~fGfep~A~~~letg~~~~~s~alr~g~~vFv~~s~~~p~~------   78 (381)
T KOG0638|consen    5 DKGAKPEAGKFLRFHHIEFWVGNAKQAARWYCSGFGFEPLAYRGLETGSREWASHALRQGKIVFVFNSAYNPDN------   78 (381)
T ss_pred             cCCCCccccceeeeeEEEEEecCcHHHHHHHHhhcCCcchhcccccccchHHHHHHhhcCCEEEEEecCCCCCc------
Confidence            88999999999999999999999999999999999999999999999998899999999999999999987652      


Q ss_pred             CCCCCCCCCCChhHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCc---eEEEEEEecCCeEEEEe
Q 013898          100 GNSSASLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNL---AVIAEVQLYGDVVLRYV  176 (434)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~---~~~~~i~~~Gg~~~~fv  176 (434)
                                  +...+++-+||+||.+|||+|+|++++++.++++||+++.+|+...+.   +++++++.+|++.|+++
T Consensus        79 ------------~~~G~~l~~HgdgvkdvafeVeD~da~~~~~va~Ga~v~~~p~~~~da~G~v~~A~l~tygd~thtlv  146 (381)
T KOG0638|consen   79 ------------SEYGDHLVKHGDGVKDVAFEVEDADAIFQEAVANGAKVVRPPWEESDAQGAVTYAVLKTYGDTTHTLV  146 (381)
T ss_pred             ------------hhhhhhhhhcccchhceEEEecchHHHHHHHHHcCCcccCCcceeeccCCcEEEEEEecccchhhhhh
Confidence                        234578899999999999999999999999999999999999876554   78999999999999999


Q ss_pred             eccCcCCCCCCCCCCccCCCCCCCC--cccceeeeeeeeEecC--CHHHHHHHHHHhhCCeeeeeeecccCcccccCceE
Q 013898          177 SYKDKANHLDFLPGFEPTDEISSFP--LDYGIRRLDHAVGNVP--ELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNS  252 (434)
Q Consensus       177 d~~~~~~~g~~~p~f~~~~~~~~~~--~~~~l~~iDHv~i~V~--dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s  252 (434)
                      ++  ..|.|.|+|+|++++.....+  ...++.+|||++.|+|  .|+.++.||.++|||++.|+++..++++++|+++|
T Consensus       147 Er--~~y~g~FLPGF~~v~~~~~fp~l~~~~~~~iDH~vgn~p~~em~sa~~wy~~~l~Fhrfwsvdd~~v~te~SaLrs  224 (381)
T KOG0638|consen  147 ER--KGYKGPFLPGFEPVSSDALFPKLPKGGLNRIDHVVGNQPDGEMESALRWYEKCLGFHRFWSVDDSQVHTEYSALRS  224 (381)
T ss_pred             hh--ccccccCCCCcccCccccccCCCCccceeehhhhhccCCcccchHHHHHHHHhhcccccccCCcchhhhHHHHHHH
Confidence            97  579999999999987532121  2368999999999999  69999999999999999999998888899999999


Q ss_pred             EEEEcCCCceEEEecccCCCCCCCchHHHHHhhcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHh
Q 013898          253 VVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLK  332 (434)
Q Consensus       253 ~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~  332 (434)
                      +++.+.++.|+++||||.+|...+|||++|+++|+|+||||||+.|+||.++++.||+|    |.+||.+ |.+||++|+
T Consensus       225 ~vlan~~esi~mpinEp~~G~k~ksQIqeyv~y~gG~GvQHiaL~tedIi~Ai~~lr~r----G~eFLs~-Ps~YYqnl~  299 (381)
T KOG0638|consen  225 IVLANYEESIKMPINEPAPGKKKKSQIQEYVEYHGGAGVQHIALNTEDIIEAIRGLRAR----GGEFLSP-PSTYYQNLK  299 (381)
T ss_pred             HHHhcCCccEEEeccCCCCCCccHHHHHHHHHhcCCCceeeeeecchHHHHHHHHHHhc----CCccccC-CHHHHHhHH
Confidence            99999999999999999998767799999999999999999999999999999999999    9999975 699999999


Q ss_pred             hhcC--CCCChhHHHHHHhcCeEEecCCCceEEEEEccccCCCCCeEEEEEEeeccccccccCcccccCCCCCcCCccHH
Q 013898          333 NRAG--DVLTDEQIKQCEELGVLVDRDDQGTLLQIFTKPVGDRPTIFIEIIQRVGCMLKDEEGKTYQKGGCGGFGKGNFS  410 (434)
Q Consensus       333 ~R~~--~~l~~~~~~~l~~~~iL~D~d~~g~llqifT~~~~~r~~~FfEiIqR~g~~~~~~~~~~~~~~~~~GFG~gN~~  410 (434)
                      +|+.  ....+++++.|+++|||+|+|++||||||||||++||||||+|||||.|+               +|||+|||+
T Consensus       300 erl~~~~~~vked~~~l~el~ILvD~De~gyLLQIFTKplqdrpTlFlEiIQR~n~---------------~GFGaGNfk  364 (381)
T KOG0638|consen  300 ERLSTSIRKVKEDIKLLEELGILVDFDENGYLLQIFTKPLQDRPTLFLEIIQRQNH---------------EGFGAGNFK  364 (381)
T ss_pred             HHhhhhhhhhhccHHHHHHcCeEEecCCCcEEeeeeccccCCCchHHHHHHHHhcc---------------cccCcccHH
Confidence            9998  77899999999999999999999999999999999999999999999998               999999999


Q ss_pred             HHHHHHHHHHHHh
Q 013898          411 ELFKSIEEYEKTL  423 (434)
Q Consensus       411 aLf~aie~~~~~~  423 (434)
                      |||+|||++|..-
T Consensus       365 aLf~siEeEQ~~r  377 (381)
T KOG0638|consen  365 ALFKSIEEEQTKR  377 (381)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999988653

>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase

Probab=100.00  E-value=1.5e-75  Score=591.89  Aligned_cols=345  Identities=43%  Similarity=0.709  Sum_probs=297.0

Q ss_pred             ceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCC
Q 013898           31 NRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFD  110 (434)
Q Consensus        31 ~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~  110 (434)
                      ++++||+|+|+|++++++||++.|||+++++..   +.....++++++|+++|+|++|..+.                  
T Consensus         1 ~~i~hi~~~V~D~~~a~~~y~~~LGf~~~~~~~---~~~~~~~~~~~~G~~~l~L~~~~~~~------------------   59 (353)
T TIGR01263         1 DGFDFVEFYVGDAKQAAYYYFTRFGFEKVAKET---GHREKASHVLRQGQINFVLTAPYSSD------------------   59 (353)
T ss_pred             CceEEEEEEeCCHHHHHHHHHHhcCCcEEEEee---cCCceeEEEEEeCCEEEEEecCCCCC------------------
Confidence            479999999999999999999999999998732   22234667889999999999875432                  


Q ss_pred             hhHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCcccc-CceEEEEEEecCCeEEEEeeccCcCCCCCCCC
Q 013898          111 HAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILD-NLAVIAEVQLYGDVVLRYVSYKDKANHLDFLP  189 (434)
Q Consensus       111 ~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~-~~~~~~~i~~~Gg~~~~fvd~~~~~~~g~~~p  189 (434)
                       +.+++|+.+||+|+++|||+|+|+++++++++++|++++.+|+..+ +++.+|+|+++|++.|+||++  ..|.+.++|
T Consensus        60 -s~~~~~~~~hg~gv~~iaf~V~Dv~~a~~~l~~~Ga~~v~~p~~~~~g~~~~~~i~~~g~~~~~~i~~--~~~~~~~~~  136 (353)
T TIGR01263        60 -SPAADFAAKHGDGVKDVAFRVDDAAAAFEAAVERGAEPVQAPVELDEGAVTLATIKGIGDVVHTLVDR--GGYKGSFYP  136 (353)
T ss_pred             -chHHHHHHhCCCceEEEEEEECCHHHHHHHHHHCCCEeccCCccCCCCeEEEEEEECcCCCEEEEEcC--CCCCCCCCC
Confidence             4578899999999999999999999999999999999998876531 468899999999999999996  345556676


Q ss_pred             CCccCC-CC--CCCCcccceeeeeeeeEecC--CHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEE
Q 013898          190 GFEPTD-EI--SSFPLDYGIRRLDHAVGNVP--ELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLL  264 (434)
Q Consensus       190 ~f~~~~-~~--~~~~~~~~l~~iDHv~i~V~--dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i  264 (434)
                      ++.... ..  .....++.+++||||+++|+  ||++|+.||+++|||++.++++   +.+..+++.|+++.++++.++|
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~iDHv~i~V~~~dl~~~~~fY~~~lGf~~~~~~~---~~~~~~~~~s~~~~~~~g~~~i  213 (353)
T TIGR01263       137 GFFESLLDAALHEPPPGVGLIAIDHLVGNVYRGQMEPWAEFYEKIFGFREIRSFD---IKTEYSALNSIVMASPDGKVKI  213 (353)
T ss_pred             CccccccccccccCCCCCCeEEeeeeEcccCCccHHHHHHHHHHHhCCceeeEEE---eccCCccEEEEEEECCCCcEEE
Confidence            654221 11  01123467999999999999  9999999999999999988764   3334567889999988889999


Q ss_pred             EecccCCCCCCCchHHHHHhhcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHH
Q 013898          265 PMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQI  344 (434)
Q Consensus       265 ~L~e~~~g~~~~s~i~~fl~~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~  344 (434)
                      +|++|... ..++++++|++.++|+|+|||||.|+||++++++|+++    |++|+.+ |.+||++|.+|++. +.+++|
T Consensus       214 ~L~ep~~~-~~~s~i~~fl~~~~g~Gv~HiAf~vdDi~~~~~~l~~~----Gv~~l~~-P~~yY~~l~~r~~~-~~~~~~  286 (353)
T TIGR01263       214 PLNEPASG-KDKSQIEEFLEFYNGAGVQHIALNTDDIVRTVRALRAR----GVEFLDT-PDTYYDLLGERLGG-HVKEDL  286 (353)
T ss_pred             EEeccCCC-CCCCHHHHHHHHcCCCCccEEEEEcCCHHHHHHHHHHc----CCccCcC-CHHHHHHHHHHhcc-cccchH
Confidence            99998532 35799999999999999999999999999999999999    9999985 69999999999974 568899


Q ss_pred             HHHHhcCeEEecCCCceEEEEEccccCCCCCeEEEEEEeeccccccccCcccccCCCCCcCCccHHHHHHHHHHHHHHhC
Q 013898          345 KQCEELGVLVDRDDQGTLLQIFTKPVGDRPTIFIEIIQRVGCMLKDEEGKTYQKGGCGGFGKGNFSELFKSIEEYEKTLG  424 (434)
Q Consensus       345 ~~l~~~~iL~D~d~~g~llqifT~~~~~r~~~FfEiIqR~g~~~~~~~~~~~~~~~~~GFG~gN~~aLf~aie~~~~~~~  424 (434)
                      ++|++++||||+|++||||||||+|+++|||||||||||+|+               +|||+|||||||||||++|+.-+
T Consensus       287 ~~l~~~~iL~D~d~~g~llqift~~~~~~~~~FfEiiqR~~~---------------~gfG~gN~~alf~a~e~~q~~r~  351 (353)
T TIGR01263       287 DTLRELNILIDGDEDGYLLQIFTKPLQDRGTLFFEIIQRKGA---------------GGFGEGNFKALFEAIEREQERRG  351 (353)
T ss_pred             HHHHHCCEEEecCCCceEEEEeccCCCCCCCeEEEEEEEcCC---------------CccchhhHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999997               99999999999999999997654

This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.

>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]

Probab=100.00  E-value=1.1e-75  Score=565.59  Aligned_cols=342  Identities=32%  Similarity=0.492  Sum_probs=300.7

Q ss_pred             CCCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCC
Q 013898           27 RFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASL  106 (434)
Q Consensus        27 ~~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~  106 (434)
                      |+...+++||+|+|++++++..-|...|||+.++++.      .+++.+||||+|+|+||+..                 
T Consensus        17 P~~~~GfeFvEf~~~d~~~~l~~l~~~lGF~~~~~Hr------sk~v~l~rQGdinlvvn~~~-----------------   73 (363)
T COG3185          17 PEGTDGFEFVEFAVPDPQEALGALLGQLGFTAVAKHR------SKAVTLYRQGDINLVVNAEP-----------------   73 (363)
T ss_pred             CCCCCceeEEEEecCCHHHHHHHHHHHhCcccccccc------ccceeEEEeCCEEEEEcCCC-----------------
Confidence            3359999999999999987777777899999998753      36889999999999999742                 


Q ss_pred             CCCChhHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEeeccCcCCCCC
Q 013898          107 PTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSYKDKANHLD  186 (434)
Q Consensus       107 ~~~~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd~~~~~~~g~  186 (434)
                          .|++++|+..||+++|+|||+|+|+..+++|+.+.|++.+..+.+. +++.+|+|+++||++++|+|+..+  ...
T Consensus        74 ----~s~a~~f~~~Hgps~~a~a~~V~DA~~A~a~A~a~gA~~~~~~~g~-~e~~ipai~giggsllyfvd~~~~--~si  146 (363)
T COG3185          74 ----DSFAAEFLDKHGPSACAMAFRVDDAEQALARALALGARTIDTEIGA-GEVDIPAIRGIGGSLLYFVDRYGG--RSI  146 (363)
T ss_pred             ----cchhhHHHHhcCCchheeEEeeCCHHHHHHHHHHcCCccccCCCCC-ccccccceeccCCcEEEEeccCCC--Ccc
Confidence                2578999999999999999999999999999999999887776554 688999999999999999997311  235


Q ss_pred             CCCCCccCCCCCCCCcccceeeeeeeeEecC--CHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEE
Q 013898          187 FLPGFEPTDEISSFPLDYGIRRLDHAVGNVP--ELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLL  264 (434)
Q Consensus       187 ~~p~f~~~~~~~~~~~~~~l~~iDHv~i~V~--dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i  264 (434)
                      |..+|.+.... ......++..|||++.+|+  .|+.|+.||+++|||+...+++   +.+..++++|++|.+++|.|+|
T Consensus       147 yd~~f~~~~~~-~~~~~~g~~~IDHl~~nv~~~~md~w~~FY~~if~~~~~~~fd---i~~p~tgl~Sram~Sp~G~vrl  222 (363)
T COG3185         147 YDVEFEPNGAQ-GASGGVGLTAIDHLTHNVKAGQMDTWVLFYESLFGFREIQYFD---IPGPITGLRSRAMVSPCGKVRL  222 (363)
T ss_pred             ccccccccccc-ccccccCceeechhhhhcchhhHHHHHHHHHHHhCccceeeEe---ccCCcccEEEeeEecCCCcEEe
Confidence            77777765211 1234567899999999999  7999999999999999999886   4445678999999999999999


Q ss_pred             EecccCCCCCCCchHHHHHhhcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHH
Q 013898          265 PMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQI  344 (434)
Q Consensus       265 ~L~e~~~g~~~~s~i~~fl~~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~  344 (434)
                      +||++.   +++|||++||..++|+|||||||.|+||.+++++|+++    |++||++ |.+||+++.+|++  +++|++
T Consensus       223 plN~s~---~~~sqi~efl~~y~G~GIQHIA~~T~dI~~tv~~lr~r----G~~fl~i-p~tYYd~~~~R~~--~~~e~l  292 (363)
T COG3185         223 PLNESA---DDKSQIGEFLREYRGEGIQHIAFGTDDIYATVAALRER----GVKFLPI-PETYYDDLDARFP--LHGEFL  292 (363)
T ss_pred             ecccCC---CchhHHHHHHHHhCCCcceEEEecccHHHHHHHHHHHc----CCccCCC-chhHHHHHhhcCC--CChHHH
Confidence            999996   57899999999999999999999999999999999999    9999997 5999999999999  899999


Q ss_pred             HHHHhcCeEEecCCCc-eEEEEEccccCCCCCeEEEEEEeeccccccccCcccccCCCCCcCCccHHHHHHHHHHHHHHh
Q 013898          345 KQCEELGVLVDRDDQG-TLLQIFTKPVGDRPTIFIEIIQRVGCMLKDEEGKTYQKGGCGGFGKGNFSELFKSIEEYEKTL  423 (434)
Q Consensus       345 ~~l~~~~iL~D~d~~g-~llqifT~~~~~r~~~FfEiIqR~g~~~~~~~~~~~~~~~~~GFG~gN~~aLf~aie~~~~~~  423 (434)
                      ++|++++||||+|++| .||||||+|+.+  ||||||||||+              |++|||+||||||||+||..|...
T Consensus       293 d~Lr~~~IL~D~~~~~~~lLQift~~~~g--~~FFEiIeRR~--------------g~~GfGegNF~Alfe~~eq~q~rR  356 (363)
T COG3185         293 DALRELEILYDGDGGGGELLQIFTRTFIG--PFFFEIIERRK--------------GYQGFGEGNFKALFESIEQDQIRR  356 (363)
T ss_pred             HHHHhcCeEeecCCCCcEEEEEecccccC--ceeEEEEEecc--------------ccccccccchhhHHHHHHHHHhhh
Confidence            9999999999999988 999999999976  59999999953              259999999999999999999877


Q ss_pred             CCCcc
Q 013898          424 GAKPV  428 (434)
Q Consensus       424 ~~~~~  428 (434)
                      ++-.+
T Consensus       357 gv~~~  361 (363)
T COG3185         357 GVLRA  361 (363)
T ss_pred             ccccC
Confidence            66544

>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS)

Probab=100.00  E-value=2.2e-52  Score=387.76  Aligned_cols=189  Identities=56%  Similarity=0.921  Sum_probs=173.4

Q ss_pred             eeeeeeeeEecC--CHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHH
Q 013898          206 IRRLDHAVGNVP--ELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYL  283 (434)
Q Consensus       206 l~~iDHv~i~V~--dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl  283 (434)
                      +++||||+++|+  |+++|++||+++|||+..+.++.++   ..++++|.++.++++.++|+|++|..+ ..+|++++|+
T Consensus         1 ~~~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~---~~~~~~s~~l~~~~g~i~l~L~~~~~~-~~~s~~~~fl   76 (191)
T cd07250           1 LTRIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIED---PYSGLRSRVLASPDGKIRIPLNEPASG-KRKSQIQEFL   76 (191)
T ss_pred             CceeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCc---CcccEEEEEEECCCCcEEEEEecCCCC-CCccHHHHHH
Confidence            468999999999  9999999999999999988765332   246689999999889999999998742 2579999999


Q ss_pred             hhcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEE
Q 013898          284 EHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLL  363 (434)
Q Consensus       284 ~~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~ll  363 (434)
                      +.+.|+|+|||||.|+||++++++|+++    |++++.. |.+||++|.+|++..+.++++++|+++|||||+|++|+||
T Consensus        77 ~~~~G~Gv~HIAf~vdDI~~~~~~L~~~----Gv~~l~~-P~~yy~~l~~r~~~~~~~~~~~~l~~~~il~d~~~~~~ll  151 (191)
T cd07250          77 EYYGGAGVQHIALATDDIFATVAALRAR----GVEFLPI-PDNYYDDLEARLDGILVDEDLDTLRELGILVDRDDGGYLL  151 (191)
T ss_pred             HHhCCCceeEEEEECCCHHHHHHHHHHc----CCeeccC-chhhHHHHHHhccccccchhHHHHHHCCEEEECCCCCEEE
Confidence            9999999999999999999999999999    9999986 5999999999998557899999999999999999999999


Q ss_pred             EEEccccCCCCCeEEEEEEeeccccccccCcccccCCCCCcCCccHHHHHHHHHH
Q 013898          364 QIFTKPVGDRPTIFIEIIQRVGCMLKDEEGKTYQKGGCGGFGKGNFSELFKSIEE  418 (434)
Q Consensus       364 qifT~~~~~r~~~FfEiIqR~g~~~~~~~~~~~~~~~~~GFG~gN~~aLf~aie~  418 (434)
                      ||||+|+++|||||||||||+|+               +|||+|||+|||+|||+
T Consensus       152 q~ft~~~~~~~~~f~E~iqR~g~---------------~gfg~~N~~~l~~a~e~  191 (191)
T cd07250         152 QIFTKPVFDRPTFFFEIIQRRGY---------------TGFGAGNFKALFEAIER  191 (191)
T ss_pred             EEeccCCCCCCCeEEEEEEEcCC---------------CccccchHHHHHHHhhC
Confidence            99999999999999999999997               99999999999999985

HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,

>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A

Probab=99.90  E-value=6.1e-24  Score=185.59  Aligned_cols=125  Identities=32%  Similarity=0.463  Sum_probs=101.5

Q ss_pred             cCCCCCCCCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccC
Q 013898           21 QNPKSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAG  100 (434)
Q Consensus        21 ~~~~~~~~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~  100 (434)
                      +||+    .+.+++||||+|++++++..+| ..|||+.++++.      .+.+++|+||+|+|+||+.        |   
T Consensus         2 ~nP~----g~~G~dFvEFa~~~~~~l~~~~-~~lGF~~~a~hr------sk~v~l~rQG~I~~vln~e--------p---   59 (139)
T PF14696_consen    2 DNPL----GLDGFDFVEFAVPDAQALAQLF-TALGFQPVARHR------SKDVTLYRQGDINFVLNSE--------P---   59 (139)
T ss_dssp             --TT-----EEEEEEEEEE-SSTTSCHHHH-CCCCEEEECCEC------CCSEEEEEETTEEEEEEEE--------S---
T ss_pred             CCCC----CCCCeEEEEEecCCHHHHHHHH-HHhCcceEEecC------CcceEEEEeCCEEEEEeCC--------C---
Confidence            4676    5999999999999987777766 589999999863      4678999999999999983        1   


Q ss_pred             CCCCCCCCCChhHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEeec
Q 013898          101 NSSASLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSY  178 (434)
Q Consensus       101 ~~~~~~~~~~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd~  178 (434)
                                .+++++|++.||+|||+|||+|+|+.++++||+++|++.+.+|... +++.+|+|+++||++|+|||+
T Consensus        60 ----------~s~a~~~~~~HG~sv~aiafrV~Da~~A~~rA~~~GA~~~~~~~~~-~e~~~paI~g~G~sl~yfVdr  126 (139)
T PF14696_consen   60 ----------DSFAAEFAAQHGPSVCAIAFRVDDAAAAYERAVALGAEPVQEPTGP-GELNIPAIRGIGGSLHYFVDR  126 (139)
T ss_dssp             ----------TSCHHHHHHHHSSEEEEEEEEES-HHHHHHHHHHTT--EEEEEEET-T-BEEEEEE-CCC-EEEEEE-
T ss_pred             ----------cchHHHHHHhcCCEEEEEEEEeCCHHHHHHHHHHcCCcCcccCCCC-CcEeeeeEEccCCCEEEEEec
Confidence                      2567999999999999999999999999999999999999888655 689999999999999999996

>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase

Probab=99.85  E-value=7e-19  Score=174.21  Aligned_cols=252  Identities=16%  Similarity=0.206  Sum_probs=153.4

Q ss_pred             cceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEe-C---CEEEEEEcCCCCCCCcccccCCCCCC
Q 013898           30 VNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRS-G---DLRFVFTAPYSPSISDAADAGNSSAS  105 (434)
Q Consensus        30 i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~-G---~i~~vl~~p~~~~~~~~~~~~~~~~~  105 (434)
                      +++++||.|.|+|++++++||+++|||+++.+.+        ....++. +   ...+++..                  
T Consensus         2 i~~i~Hi~l~V~Dle~s~~FY~~~LG~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~------------------   55 (303)
T TIGR03211         2 VMRLGHVELRVLDLEESLKHYTDVLGLEETGRDG--------QRVYLKAWDEWDHYSVILTE------------------   55 (303)
T ss_pred             cceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecC--------ceEEEEeccccccceEeecc------------------
Confidence            6789999999999999999999999999876532        0112221 1   12222211                  


Q ss_pred             CCCCChhHHhHHHHhcCCceeEEEEEec---CHHHHHHHHHHcCCCCCCCCccc-cCceEEEEEEecCCeEEEEeeccCc
Q 013898          106 LPTFDHAACRSFAASHGLAARSIAVEVE---DADVAFNTSVAHGAKPSSPPVIL-DNLAVIAEVQLYGDVVLRYVSYKDK  181 (434)
Q Consensus       106 ~~~~~~~~~~~~l~~hG~gv~~Iaf~V~---Dvd~a~~ra~~~Ga~~~~~p~~~-~~~~~~~~i~~~Gg~~~~fvd~~~~  181 (434)
                                    ....++.|+||.|+   |+++++++++++|+++...|... .+......++.+.|..+++....+.
T Consensus        56 --------------~~~~g~~hiaf~v~~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~g~~~~~~DPdG~~iEl~~~~~~  121 (303)
T TIGR03211        56 --------------ADTAGLDHMAFKVESEADLERLVKRLEAYGVGTGWIPAGELPGVGRRVRFTLPSGHTMELYAEKEY  121 (303)
T ss_pred             --------------CCCCceeEEEEEeCCHHHHHHHHHHHHHcCCCeeeccCCCCCCcceEEEEECCCCCEEEEEEcccc
Confidence                          11246889999998   78999999999999875544311 1111223456666767777653211


Q ss_pred             CCCCCCCCCCccCCCCCCCCcccceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCc-eEEEEEcCCC
Q 013898          182 ANHLDFLPGFEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGL-NSVVLANNDE  260 (434)
Q Consensus       182 ~~~g~~~p~f~~~~~~~~~~~~~~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~-~s~~l~~~~g  260 (434)
                       .. .......+.... ....++.+++|+||++.|+|++++.+||+++|||+........+  .   .. ...++.....
T Consensus       122 -~~-~~~~~~~~~~~~-~~~~~~~~~~i~Hi~l~V~Dl~~s~~FY~~~LG~~~~~~~~~~~--~---~~~~~~~~~~~~~  193 (303)
T TIGR03211       122 -VG-ELVGGLNPDPWP-DPLRGVGARRLDHCLLYGEDVAENTRFFTEVLGFRLTEQVVLGD--G---KEQAAAWLSVSNK  193 (303)
T ss_pred             -cc-ccccccCCcccc-cccCCcCceeEEEEeEEeCCHHHHHHHHHHhcCCEEEeeEEcCC--C---cEEEEEEEEcCCC
Confidence             11 000011111000 01234568899999999999999999999999999765432111  0   01 1122222111


Q ss_pred             ceEEEecccCCCCCCCchHHHHHhhcCCCC-ceEEEEEeCC---HHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcC
Q 013898          261 MVLLPMNEPVFGTKRKSQIQTYLEHNEGAG-VQHLALVSED---IFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAG  336 (434)
Q Consensus       261 ~v~i~L~e~~~g~~~~s~i~~fl~~~~G~G-vqHIAf~vdD---I~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~  336 (434)
                      ...+.+                +.. .+.| ++||||.|+|   +.++.++|+++    |++++..| ...        +
T Consensus       194 ~~~~~~----------------~~~-~~~g~~~Hiaf~v~~~~~v~~~~~~l~~~----G~~~~~~p-~~~--------~  243 (303)
T TIGR03211       194 AHDIAF----------------VGD-PEPGKLHHVSFFLDSWEDVLKAADVMSKN----DVSIDIGP-TRH--------G  243 (303)
T ss_pred             Ccccce----------------ecC-CCCCceEEEEEEcCCHHHHHHHHHHHHhC----CCceeeCC-ccc--------C
Confidence            111111                111 2355 9999999997   55577889998    99987654 321        1


Q ss_pred             CCCChhHHHHHHhcCeEEecCCCceEEEEEccc
Q 013898          337 DVLTDEQIKQCEELGVLVDRDDQGTLLQIFTKP  369 (434)
Q Consensus       337 ~~l~~~~~~~l~~~~iL~D~d~~g~llqifT~~  369 (434)
                                ......+|-+|++|.++++++-.
T Consensus       244 ----------~~~~~~~y~~DPdG~~iEl~~~~  266 (303)
T TIGR03211       244 ----------ITRGQTIYFFDPSGNRNETFGGG  266 (303)
T ss_pred             ----------CCCceEEEEECCCCCEEEEecCC
Confidence                      00112568899999999998543

Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.

>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase

Probab=99.84  E-value=1.8e-18  Score=170.38  Aligned_cols=246  Identities=19%  Similarity=0.142  Sum_probs=151.6

Q ss_pred             cceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEe---C-CEEEEEEcCCCCCCCcccccCCCCCC
Q 013898           30 VNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRS---G-DLRFVFTAPYSPSISDAADAGNSSAS  105 (434)
Q Consensus        30 i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~---G-~i~~vl~~p~~~~~~~~~~~~~~~~~  105 (434)
                      |.+++||.|.|+|++++++||+++|||+++.+.+        ....++.   + ...+.+..                  
T Consensus         2 i~~i~hv~l~v~Dl~~s~~FY~~vLGl~~~~~~~--------~~~~~~~~~~~~~~~l~l~~------------------   55 (294)
T TIGR02295         2 ILRTGHVELRVTDLDKSREFYVDLLGFRETESDK--------EYIYLRGIEEFQHHSLVLTK------------------   55 (294)
T ss_pred             CceeeEEEEEeCCHHHHHHHHHHccCCEEEEecC--------CeEEEeccCcCCceEEEeee------------------
Confidence            6889999999999999999999999999876532        1122321   1 12233321                  


Q ss_pred             CCCCChhHHhHHHHhcCCceeEEEEEec---CHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEeeccCcC
Q 013898          106 LPTFDHAACRSFAASHGLAARSIAVEVE---DADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSYKDKA  182 (434)
Q Consensus       106 ~~~~~~~~~~~~l~~hG~gv~~Iaf~V~---Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd~~~~~  182 (434)
                                    ....++.++||.|+   |+++++++++++|+++...+...  ......++.+.|..++|+...+..
T Consensus        56 --------------~~~~~~~hiaf~v~~~~dl~~~~~~l~~~Gv~v~~~~~~~--~~~~~~~~DPdG~~iEl~~~~~~~  119 (294)
T TIGR02295        56 --------------APSAALSYIGFRVSKEEDLDKAADFFQKLGHPVRLVRDGG--QPEALRVEDPFGYPIEFYFEMEKV  119 (294)
T ss_pred             --------------CCCcCccEEEEEeCCHHHHHHHHHHHHhcCCcEEeecCCC--CceEEEEECCCCCEEEEEEchhhc
Confidence                          01236679999997   78999999999999865443211  123344566666667766531110


Q ss_pred             CCCCCCCCCccCCCCCCCCcccceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCce
Q 013898          183 NHLDFLPGFEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMV  262 (434)
Q Consensus       183 ~~g~~~p~f~~~~~~~~~~~~~~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v  262 (434)
                            +...   .......+..+++|+||++.|+|++++.+||+++|||+......  +..+   .....++.......
T Consensus       120 ------~~~~---~~~~~~~~~~~~~i~Hv~l~v~dl~~a~~Fy~~~lG~~~~~~~~--~~~~---~~~~~~~~~~~~~~  185 (294)
T TIGR02295       120 ------ERLL---RRYHRHRGVSPVRLDHFNVFVPDVQRALRFYKEELGFRVTEYTE--DDEG---NLAAAWLHRKGGVH  185 (294)
T ss_pred             ------cccc---ccccccCCccceeeeeEEEEeCCHHHHHHHHHHhcCCEEEEEec--cCCC---cEEEEEEecCCCcC
Confidence                  1000   00001123467899999999999999999999999999865432  1111   11112222211111


Q ss_pred             EEEecccCCCCCCCchHHHHHhhcCCCCceEEEEEeCCH---HHHHHHHHHhcCCCCce--eccCCCchhhHhHhhhcCC
Q 013898          263 LLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDI---FRTLREMRKRSGVGGFE--FMPSPPPTYYKNLKNRAGD  337 (434)
Q Consensus       263 ~i~L~e~~~g~~~~s~i~~fl~~~~G~GvqHIAf~vdDI---~~av~~L~~~~~~~Gv~--fl~~pP~~YY~~l~~R~~~  337 (434)
                      .+.+.                 ...++|++||||.|+|+   .+..++|+++    |++  +... |.        |-+ 
T Consensus       186 ~~~~~-----------------~~~~~~~~Hiaf~v~d~~~v~~~~~~l~~~----G~~~~~~~~-p~--------~~~-  234 (294)
T TIGR02295       186 DIALT-----------------NGNGPRLHHIAYWVHDPLNIIKACDILASA----GLSDSIERG-PG--------RHG-  234 (294)
T ss_pred             ceEee-----------------cCCCCceeeEEEEcCCHHHHHHHHHHHHhC----CCCcccccC-Cc--------cCC-
Confidence            22221                 11357899999999995   4567888888    986  2222 21        111 


Q ss_pred             CCChhHHHHHHhcCeEEecCCCceEEEEEccccC
Q 013898          338 VLTDEQIKQCEELGVLVDRDDQGTLLQIFTKPVG  371 (434)
Q Consensus       338 ~l~~~~~~~l~~~~iL~D~d~~g~llqifT~~~~  371 (434)
                               ....-.+|-+|++|.++++++.+++
T Consensus       235 ---------~~~~~~~y~~DP~G~~iEl~~~~~~  259 (294)
T TIGR02295       235 ---------VSNAFFLYLRDPDGHRIELYTGDYL  259 (294)
T ss_pred             ---------CCcceEEEEECCCCCEEEEEeccce
Confidence                     0011135778999999999998863

The enzyme from Bacillus brevis contains manganese.

>PLN02300 lactoylglutathione lyase

Probab=99.82  E-value=4.3e-18  Score=167.67  Aligned_cols=225  Identities=16%  Similarity=0.202  Sum_probs=144.6

Q ss_pred             CCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeC--CE--EEEEEcCCCCCCCcccccCCCC
Q 013898           28 FRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSG--DL--RFVFTAPYSPSISDAADAGNSS  103 (434)
Q Consensus        28 ~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G--~i--~~vl~~p~~~~~~~~~~~~~~~  103 (434)
                      +.+.+++||.|.|+|++++++||+++|||+.+.+...+..  ......+..|  ..  .+.+......            
T Consensus        20 ~~i~~l~Hv~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~--~~~~~~l~~g~~~~~~~lel~~~~~~------------   85 (286)
T PLN02300         20 KDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEE--KYTNAFLGYGPEDSNFVVELTYNYGV------------   85 (286)
T ss_pred             cccceEEEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCC--cEEEEEEccCCCCCceEEEEeccCCC------------
Confidence            5689999999999999999999999999998865432221  1122333332  22  3333221100            


Q ss_pred             CCCCCCChhHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccC-ceEEEEEEecCCeEEEEeeccCcC
Q 013898          104 ASLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDN-LAVIAEVQLYGDVVLRYVSYKDKA  182 (434)
Q Consensus       104 ~~~~~~~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~-~~~~~~i~~~Gg~~~~fvd~~~~~  182 (434)
                                 ..  ..++.|..|+||.|+|+++++++++++|+++...|..... ......++++.|..+.|++++   
T Consensus        86 -----------~~--~~~~~g~~hia~~v~dvd~~~~~l~~~G~~i~~~~~~~~~g~~~~~~~~DPdG~~iEl~~~~---  149 (286)
T PLN02300         86 -----------DK--YDIGTGFGHFGIAVEDVAKTVELVKAKGGKVTREPGPVKGGKSVIAFVKDPDGYKFELIQRG---  149 (286)
T ss_pred             -----------Cc--cccCCCccEEEEEeCCHHHHHHHHHHCCCeeecCCcccCCCceEEEEEECCCCCEEEEEeCC---
Confidence                       00  0245678899999999999999999999987766643321 122333444555555554420   


Q ss_pred             CCCCCCCCCccCCCCCCCCcccceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEc-CC-C
Q 013898          183 NHLDFLPGFEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLAN-ND-E  260 (434)
Q Consensus       183 ~~g~~~p~f~~~~~~~~~~~~~~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~-~~-g  260 (434)
                                           .....++|+.+.|+|++++..||+++|||+..+....++.     +.....+.. +. .
T Consensus       150 ---------------------~~~~~~~~~~l~~~d~~~a~~Fy~~~lg~~~~~~~~~~~~-----~~~~~~~~~~~~~~  203 (286)
T PLN02300        150 ---------------------PTPEPLCQVMLRVGDLDRSIKFYEKAFGMKLLRKRDNPEY-----KYTIAMMGYGPEDK  203 (286)
T ss_pred             ---------------------CCCCcceeEEEEeCCHHHHHHHHHhccCCEEEeeeccccc-----ceEEEEEecCCCCC
Confidence                                 0123678999999999999999999999998764431111     122222221 11 1


Q ss_pred             ceEEEecccCCCCCCCchHHHHHhhcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccC
Q 013898          261 MVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPS  322 (434)
Q Consensus       261 ~v~i~L~e~~~g~~~~s~i~~fl~~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~  322 (434)
                      ...+++....    ..   .+   ...|+|.+|++|.|+||++++++++++    |++++..
T Consensus       204 ~~~lel~~~~----~~---~~---~~~g~~~~~i~~~v~di~~~~~~~~~~----G~~v~~~  251 (286)
T PLN02300        204 TTVLELTYNY----GV---TE---YTKGNAYAQIAIGTDDVYKTAEAIKLV----GGKITRE  251 (286)
T ss_pred             ccEEEEeecC----CC---Cc---cccCCceeEEEEecCCHHHHHHHHHHc----CCeEecC
Confidence            2234443221    11   11   124788999999999999999999999    9999863

>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase

Probab=99.82  E-value=4.5e-18  Score=167.26  Aligned_cols=255  Identities=15%  Similarity=0.089  Sum_probs=153.1

Q ss_pred             cceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeC--CEEEEEEcCCCCCCCcccccCCCCCCCC
Q 013898           30 VNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSG--DLRFVFTAPYSPSISDAADAGNSSASLP  107 (434)
Q Consensus        30 i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G--~i~~vl~~p~~~~~~~~~~~~~~~~~~~  107 (434)
                      |.+++||.+.|+|++++.+||+++|||+.+.+..  .+     ...++.+  ...+.+...                   
T Consensus         1 ~~~i~~v~l~V~Dl~~s~~FY~~~LGl~~~~~~~--~~-----~~~~~~~~~~~~~~l~~~-------------------   54 (286)
T TIGR03213         1 VRGLGYLGIGVSDVDAWREFATEVLGMMVASEGE--ND-----ALYLRLDSRAHRIAVHPG-------------------   54 (286)
T ss_pred             CceeeEEEEEeCCHHHHHHHHHhccCcccccCCC--Cc-----eEEEEcCCCceEEEEEEC-------------------
Confidence            5789999999999999999999999999765422  11     1223433  344554321                   


Q ss_pred             CCChhHHhHHHHhcCCceeEEEEEecC---HHHHHHHHHHcCCCCCCCCcc---ccCceEEEEEEecCCeEEEEeeccCc
Q 013898          108 TFDHAACRSFAASHGLAARSIAVEVED---ADVAFNTSVAHGAKPSSPPVI---LDNLAVIAEVQLYGDVVLRYVSYKDK  181 (434)
Q Consensus       108 ~~~~~~~~~~l~~hG~gv~~Iaf~V~D---vd~a~~ra~~~Ga~~~~~p~~---~~~~~~~~~i~~~Gg~~~~fvd~~~~  181 (434)
                                   ...++.+++|.|+|   ++++.++++++|+++...|..   ..+......++.+.|..+++......
T Consensus        55 -------------~~~~~~~~~f~V~~~~~l~~~~~~L~~~Gv~~~~~~~~~~~~~~~~~~~~f~DPdGn~lEl~~~~~~  121 (286)
T TIGR03213        55 -------------ESDDLAYAGWEVADEAGLDQVKEKLEKAGVAVTVASAAEARERGVLGLIKFTDPGGNPLEIYYGAVE  121 (286)
T ss_pred             -------------CcCCeeeEeeeeCCHHHHHHHHHHHHHcCCceEECCHHHhhhccceEEEEEECCCCCEEEEEEcccc
Confidence                         01245689999998   889999999999987655431   11112233445566666665542110


Q ss_pred             CCCCCCCCCCccCCCCCCCCcccceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCc
Q 013898          182 ANHLDFLPGFEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEM  261 (434)
Q Consensus       182 ~~~g~~~p~f~~~~~~~~~~~~~~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~  261 (434)
                      .....+.   .+.. .. .. ....++|+||++.|+|++++++||+++|||+.......+.+.+  ......++.+.+..
T Consensus       122 ~~~~~~~---~~~~-~~-~~-~~~~~~l~Hv~l~v~Dle~s~~FY~~~LGf~~~~~~~~~~~~g--~~~~~~~l~~~~~~  193 (286)
T TIGR03213       122 DFEKPFV---SPRA-VS-GF-VTGDQGLGHIVLRVPDVDAALAFYTEVLGFQLSDVIDLPAGPG--VTVRPYFLHCNERH  193 (286)
T ss_pred             cCCCCCC---CCCC-CC-cc-ccCCccccEEEEEcCCHHHHHHHHHHccCCeEEEeEcccCCCC--CcceEEEEEECCCc
Confidence            0000010   0000 00 01 1236899999999999999999999999999865432111100  00112233332222


Q ss_pred             eEEEecccCCCCCCCchHHHHHhhcCCCCceEEEEEeCCHHH---HHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCC
Q 013898          262 VLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFR---TLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDV  338 (434)
Q Consensus       262 v~i~L~e~~~g~~~~s~i~~fl~~~~G~GvqHIAf~vdDI~~---av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~  338 (434)
                      ..+.+...                ..+.|++||||.|+|+.+   ..++|+++    |+ ....| ..        -+  
T Consensus       194 ~~~~l~~~----------------~~~~~~~Hiaf~v~d~~~v~~~~~~l~~~----G~-~~~~~-~r--------~~--  241 (286)
T TIGR03213       194 HSLAFAAG----------------PSEKRLNHLMLEVDTLDDVGLALDRVDAD----GI-VASTL-GR--------HT--  241 (286)
T ss_pred             ceEEEecC----------------CCCCceEEEEEEcCCHHHHHHHHHHHHHC----CC-EEecC-Cc--------CC--
Confidence            22333211                124679999999998777   78999998    98 33332 11        11  


Q ss_pred             CChhHHHHHHhcCeEEecCCCceEEEEEccccC
Q 013898          339 LTDEQIKQCEELGVLVDRDDQGTLLQIFTKPVG  371 (434)
Q Consensus       339 l~~~~~~~l~~~~iL~D~d~~g~llqifT~~~~  371 (434)
                              .-..--+|-+|++|++++++|--..
T Consensus       242 --------~~~~~~~y~~DP~G~~iE~~~~~~~  266 (286)
T TIGR03213       242 --------NDHMVSFYVATPSGWLVEYGWGARV  266 (286)
T ss_pred             --------CCCeEEEEEECCCCcEEEeecCcEE
Confidence                    0012246779999999999995443

Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.

>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS)

Probab=99.77  E-value=1.8e-17  Score=145.05  Aligned_cols=136  Identities=40%  Similarity=0.600  Sum_probs=112.0

Q ss_pred             EEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCChh
Q 013898           33 FHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHA  112 (434)
Q Consensus        33 l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~  112 (434)
                      +|||.|+|+|++++++||+++|||++..+...+    ...+..+.+|+..++|..+..+.                   +
T Consensus         1 ~~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~~~~----~~~~~~~~~g~~~l~l~~~~~~~-------------------~   57 (136)
T cd08342           1 FDHVEFYVGNAKQLASWFSTKLGFEPVAYHGSE----DKASYLLRQGDINFVLNSPLNSF-------------------A   57 (136)
T ss_pred             CeEEEEEeCCHHHHHHHHHHhcCCeEEEecCCC----ceEEEEEEcCCEEEEEecCCCCC-------------------C
Confidence            589999999999999999999999998775421    12355667899999987654321                   2


Q ss_pred             HHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEeeccCcCCCCCCCCCCc
Q 013898          113 ACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSYKDKANHLDFLPGFE  192 (434)
Q Consensus       113 ~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd~~~~~~~g~~~p~f~  192 (434)
                      ...+++..|+.++.||||+|+|+++++++++++|++++.+|+......+.+.|++++|..++|+++  ..|+|.|+|+|+
T Consensus        58 ~~~~~~~~~~~g~~hia~~V~Dvda~~~~l~~~G~~v~~~p~~~~~~~~~~~i~dp~G~~ie~~~~--~~~~~~~~~~~~  135 (136)
T cd08342          58 PVADFLEKHGDGVCDVAFRVDDAAAAYERAVARGAKPVQEPVEEPGELKIAAIKGYGDSLHTLVDR--KGYKGPFLPGFE  135 (136)
T ss_pred             chHHHHHhcCCceEEEEEEeCCHHHHHHHHHHcCCeEccCceecCCeEEEEEEeccCCcEEEEEec--CCCCCccCCCCC
Confidence            235667788899999999999999999999999999999887744556788899999999999996  458899999997


Q ss_pred             c
Q 013898          193 P  193 (434)
Q Consensus       193 ~  193 (434)
                      |
T Consensus       136 ~  136 (136)
T cd08342         136 P  136 (136)
T ss_pred             C
Confidence            5

HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su

>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A

Probab=99.50  E-value=9.5e-14  Score=116.88  Aligned_cols=97  Identities=24%  Similarity=0.443  Sum_probs=78.9

Q ss_pred             eeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcCCC
Q 013898          210 DHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGA  289 (434)
Q Consensus       210 DHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G~  289 (434)
                      |||++.|+|++++++||+++||++..+....+     ..+++..++..+++.+.|+|.+|..   ..    .+++. +|.
T Consensus         1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~-----~~~v~~~~~~~~~~~~~iELi~p~~---~~----~~~~~-~~~   67 (109)
T PF13669_consen    1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDE-----PQGVRVAFLYLGDGPVQIELIQPLD---GD----SPLDR-GGG   67 (109)
T ss_dssp             EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEG-----CTTEEEEEEEETTETEEEEEEEESS---TT----CHHHH-TSS
T ss_pred             CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecC-----CCCEEEEEEEeCCCcEEEEEEEeCC---CC----ccccc-CCC
Confidence            79999999999999999999999977655421     2346777777777679999999974   23    34545 689


Q ss_pred             CceEEEEEeCCHHHHHHHHHHhcCCCCceeccCC
Q 013898          290 GVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSP  323 (434)
Q Consensus       290 GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~p  323 (434)
                      |++||||.|+||++++++|+++    |++++..+
T Consensus        68 gi~Hia~~v~D~d~~~~~l~~~----G~~~~~~~   97 (109)
T PF13669_consen   68 GIHHIAFEVDDLDAAIARLEAQ----GFRVLDEG   97 (109)
T ss_dssp             EEEEEEEEESHHHHHHHHHHHT----TECEEECE
T ss_pred             CEEEEEEEeCCHHHHHHHHHHC----CCEEcccC
Confidence            9999999999999999999999    99998753

>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=99.49  E-value=1.9e-13  Score=119.73  Aligned_cols=109  Identities=17%  Similarity=0.213  Sum_probs=74.6

Q ss_pred             eeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccC------cccccCceEEEEEcCCCceEEEecccCCCCCCCchH
Q 013898          206 IRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDV------GTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQI  279 (434)
Q Consensus       206 l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~------~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i  279 (434)
                      +++++||++.|+|++++++||++ |||+..........      +....+.+...+..+++...|+|.++........  
T Consensus         1 ~~~i~Hi~i~v~Dl~~s~~FY~~-LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~iel~~~~~~~~~~~--   77 (142)
T cd08353           1 VSRMDNVGIVVRDLEAAIAFFLE-LGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTPDGHSRLELSKFHHPAVIAD--   77 (142)
T ss_pred             CceeeeEEEEeCCHHHHHHHHHH-cCCEEccccccChHHHHHhcCCCCceEEEEEEeCCCCCceEEEEEecCCCCcCc--
Confidence            46899999999999999999998 99987654321110      0001123344555566778888887542111110  


Q ss_pred             HHHHhhcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccC
Q 013898          280 QTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPS  322 (434)
Q Consensus       280 ~~fl~~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~  322 (434)
                      ..+.. .++.|++||||.|+|+++++++|+++    |++++..
T Consensus        78 ~~~~~-~~~~g~~hia~~v~d~d~~~~~l~~~----G~~~~~~  115 (142)
T cd08353          78 HRPAP-VNALGLRRVMFAVDDIDARVARLRKH----GAELVGE  115 (142)
T ss_pred             CCCCC-CCCCCceEEEEEeCCHHHHHHHHHHC----CCceeCC
Confidence            01222 24678999999999999999999999    9999973

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.

>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS)

Probab=99.48  E-value=8.4e-13  Score=115.39  Aligned_cols=98  Identities=21%  Similarity=0.297  Sum_probs=76.1

Q ss_pred             eeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcCC
Q 013898          209 LDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEG  288 (434)
Q Consensus       209 iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G  288 (434)
                      |||++++|+|++++++||+++|||+..+....+       +.....+.  ++.+.+.|..+..   ..++..++++. .+
T Consensus         1 ~~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~~~~-------~~~~~~~~--~g~~~l~l~~~~~---~~~~~~~~~~~-~~   67 (136)
T cd08342           1 FDHVEFYVGNAKQLASWFSTKLGFEPVAYHGSE-------DKASYLLR--QGDINFVLNSPLN---SFAPVADFLEK-HG   67 (136)
T ss_pred             CeEEEEEeCCHHHHHHHHHHhcCCeEEEecCCC-------ceEEEEEE--cCCEEEEEecCCC---CCCchHHHHHh-cC
Confidence            699999999999999999999999988764311       12222233  4567888877642   34556677766 46


Q ss_pred             CCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCC
Q 013898          289 AGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSP  323 (434)
Q Consensus       289 ~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~p  323 (434)
                      .|++||||.|+||++++++|+++    |++++..|
T Consensus        68 ~g~~hia~~V~Dvda~~~~l~~~----G~~v~~~p   98 (136)
T cd08342          68 DGVCDVAFRVDDAAAAYERAVAR----GAKPVQEP   98 (136)
T ss_pred             CceEEEEEEeCCHHHHHHHHHHc----CCeEccCc
Confidence            78999999999999999999999    99999753

HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su

>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS)

Probab=99.46  E-value=7.5e-13  Score=122.94  Aligned_cols=110  Identities=19%  Similarity=0.169  Sum_probs=88.9

Q ss_pred             cceEEEEEEEeC--CHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEe--CCEEEEEEcCCCCCCCcccccCCCCCC
Q 013898           30 VNRFHHVEFWCT--DATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRS--GDLRFVFTAPYSPSISDAADAGNSSAS  105 (434)
Q Consensus        30 i~~l~HI~~~V~--da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~--G~i~~vl~~p~~~~~~~~~~~~~~~~~  105 (434)
                      +.++|||.++|+  |+++|++||+++|||+...+...++......+.++.+  |++.|.|++|..+..            
T Consensus         1 ~~~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~~g~i~l~L~~~~~~~~------------   68 (191)
T cd07250           1 LTRIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASPDGKIRIPLNEPASGKR------------   68 (191)
T ss_pred             CceeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECCCCcEEEEEecCCCCCC------------
Confidence            468999999999  9999999999999999988765444323355666664  679999998764210            


Q ss_pred             CCCCChhHHhHHHHhc-CCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccc
Q 013898          106 LPTFDHAACRSFAASH-GLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVIL  156 (434)
Q Consensus       106 ~~~~~~~~~~~~l~~h-G~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~  156 (434)
                           .+.+.+|+..| |+|+.||||.|+|+++++++++++|++++..|...
T Consensus        69 -----~s~~~~fl~~~~G~Gv~HIAf~vdDI~~~~~~L~~~Gv~~l~~P~~y  115 (191)
T cd07250          69 -----KSQIQEFLEYYGGAGVQHIALATDDIFATVAALRARGVEFLPIPDNY  115 (191)
T ss_pred             -----ccHHHHHHHHhCCCceeEEEEECCCHHHHHHHHHHcCCeeccCchhh
Confidence                 25678999888 68999999999999999999999999988877554

HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,

>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=99.42  E-value=3.2e-12  Score=111.85  Aligned_cols=129  Identities=19%  Similarity=0.246  Sum_probs=89.2

Q ss_pred             cceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCC-------Cc--eeEEEEEEE--eCCEEEEEEcCCCCCCCcccc
Q 013898           30 VNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLST-------GN--TVHASYLLR--SGDLRFVFTAPYSPSISDAAD   98 (434)
Q Consensus        30 i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~-------g~--~~~~~~~l~--~G~i~~vl~~p~~~~~~~~~~   98 (434)
                      +.+++||.|.|+|++++++||++ |||+.......+.       |.  .......+.  .|+..++|.++..+...    
T Consensus         1 ~~~i~Hi~i~v~Dl~~s~~FY~~-LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~iel~~~~~~~~~----   75 (142)
T cd08353           1 VSRMDNVGIVVRDLEAAIAFFLE-LGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTPDGHSRLELSKFHHPAVI----   75 (142)
T ss_pred             CceeeeEEEEeCCHHHHHHHHHH-cCCEEccccccChHHHHHhcCCCCceEEEEEEeCCCCCceEEEEEecCCCCc----
Confidence            46899999999999999999998 9998765432211       00  112334444  37788888876543210    


Q ss_pred             cCCCCCCCCCCChhHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEee
Q 013898           99 AGNSSASLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVS  177 (434)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd  177 (434)
                            ..        ..+...++.|+.||||+|+|+++++++++++|+++..+|....+..+...++++.|..+++++
T Consensus        76 ------~~--------~~~~~~~~~g~~hia~~v~d~d~~~~~l~~~G~~~~~~~~~~~~~~r~~~~~DPdG~~iEl~e  140 (142)
T cd08353          76 ------AD--------HRPAPVNALGLRRVMFAVDDIDARVARLRKHGAELVGEVVQYENSYRLCYIRGPEGILIELAE  140 (142)
T ss_pred             ------Cc--------CCCCCCCCCCceEEEEEeCCHHHHHHHHHHCCCceeCCceecCCCeEEEEEECCCCCEEEeee
Confidence                  00        011224566899999999999999999999999987765443334556667777777777776

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.

>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase

Probab=99.36  E-value=5.5e-12  Score=127.95  Aligned_cols=114  Identities=16%  Similarity=0.146  Sum_probs=91.6

Q ss_pred             CCCCcceEEEEEEEeC--CHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEe--CCEEEEEEcCCCCCCCcccccCC
Q 013898           26 DRFRVNRFHHVEFWCT--DATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRS--GDLRFVFTAPYSPSISDAADAGN  101 (434)
Q Consensus        26 ~~~~i~~l~HI~~~V~--da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~--G~i~~vl~~p~~~~~~~~~~~~~  101 (434)
                      +.+.+.++|||.++|+  |+++|+.||+++|||++..+..+++......+.++.+  |+++|.|++|.....        
T Consensus       152 ~~~~~~~iDHv~i~V~~~dl~~~~~fY~~~lGf~~~~~~~~~~~~~~~~s~~~~~~~g~~~i~L~ep~~~~~--------  223 (353)
T TIGR01263       152 PGVGLIAIDHLVGNVYRGQMEPWAEFYEKIFGFREIRSFDIKTEYSALNSIVMASPDGKVKIPLNEPASGKD--------  223 (353)
T ss_pred             CCCCeEEeeeeEcccCCccHHHHHHHHHHHhCCceeeEEEeccCCccEEEEEEECCCCcEEEEEeccCCCCC--------
Confidence            3566899999999999  9999999999999999987765444322344555553  789999998753210        


Q ss_pred             CCCCCCCCChhHHhHHHHhc-CCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccc
Q 013898          102 SSASLPTFDHAACRSFAASH-GLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVIL  156 (434)
Q Consensus       102 ~~~~~~~~~~~~~~~~l~~h-G~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~  156 (434)
                               .+++.+|+..| |+|+.||||+|+|+++++++++++|+.++..|...
T Consensus       224 ---------~s~i~~fl~~~~g~Gv~HiAf~vdDi~~~~~~l~~~Gv~~l~~P~~y  270 (353)
T TIGR01263       224 ---------KSQIEEFLEFYNGAGVQHIALNTDDIVRTVRALRARGVEFLDTPDTY  270 (353)
T ss_pred             ---------CCHHHHHHHHcCCCCccEEEEEcCCHHHHHHHHHHcCCccCcCCHHH
Confidence                     25678999998 68999999999999999999999999988877553

This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.

>PLN02367 lactoylglutathione lyase

Probab=99.35  E-value=1.5e-11  Score=116.48  Aligned_cols=134  Identities=13%  Similarity=0.299  Sum_probs=93.0

Q ss_pred             eeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcC-----------------CCceEEEeccc
Q 013898          207 RRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANN-----------------DEMVLLPMNEP  269 (434)
Q Consensus       207 ~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~-----------------~g~v~i~L~e~  269 (434)
                      -.+.|+.+.|.|++++++||+++|||+.....+.++.     +++...+..+                 .....|+|..+
T Consensus        74 ~~~~HtmlRVkDle~Sl~FYt~vLGm~ll~r~d~pe~-----~f~lyFL~~~~~~~~p~d~~~r~~~~~~~~~~LELt~n  148 (233)
T PLN02367         74 YIMQQTMYRIKDPKASLDFYSRVLGMSLLKRLDFPEM-----KFSLYFMGYEDTASAPTDPTERTVWTFGQKATIELTHN  148 (233)
T ss_pred             cEEEEEEEEeCCHHHHHHHHHHhcCCEEeEEEecCCC-----cEEEEEeecCCccccccccccceeeccCCCCEEEEecC
Confidence            4689999999999999999999999998776542221     1322333211                 12357888776


Q ss_pred             CCCCCCCchHHHHHhhcC-CCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHH
Q 013898          270 VFGTKRKSQIQTYLEHNE-GAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCE  348 (434)
Q Consensus       270 ~~g~~~~s~i~~fl~~~~-G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~  348 (434)
                      .. ....+.+..|+..+. ..|++||||.|+||++++++|+++    |++++..| ..         +           .
T Consensus       149 ~g-~e~~~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~erL~a~----Gv~~v~~P-~~---------g-----------~  202 (233)
T PLN02367        149 WG-TESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFEEL----GVEFVKKP-ND---------G-----------K  202 (233)
T ss_pred             CC-CCccccchhcccCCCCCCCceEEEEEcCCHHHHHHHHHHC----CCEEEeCC-cc---------C-----------C
Confidence            52 122245667776543 268999999999999999999999    99999643 31         1           0


Q ss_pred             hcCeEEecCCCceEEEEEccccC
Q 013898          349 ELGVLVDRDDQGTLLQIFTKPVG  371 (434)
Q Consensus       349 ~~~iL~D~d~~g~llqifT~~~~  371 (434)
                      ..++.+-+|++|++++|+..+..
T Consensus       203 ~~riaFIkDPDGn~IEL~e~~~~  225 (233)
T PLN02367        203 MKGIAFIKDPDGYWIEIFDLKTI  225 (233)
T ss_pred             ceEEEEEECCCCCEEEEEecccc
Confidence            12355668899998888865543

>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase

Probab=99.35  E-value=1.2e-11  Score=105.60  Aligned_cols=100  Identities=28%  Similarity=0.463  Sum_probs=74.2

Q ss_pred             eeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcC
Q 013898          208 RLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNE  287 (434)
Q Consensus       208 ~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~  287 (434)
                      +|+|+++.|+|++++++||+++|||+........     ..+....++..+  ...+.|.++.   ...+++..++..+ 
T Consensus         1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~-----~~~~~~~~~~~~--~~~i~l~~~~---~~~~~~~~~~~~~-   69 (128)
T TIGR03081         1 RIDHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVP-----EQGVKVVFIALG--NTKVELLEPL---GEDSPIAKFLEKN-   69 (128)
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHhCCCCccceeCC-----CCCcEEEEEecC--CEEEEEEecC---CCCChHHHHHhcC-
Confidence            5899999999999999999999999986543211     112344444433  4567776653   1344556676664 


Q ss_pred             CCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccC
Q 013898          288 GAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPS  322 (434)
Q Consensus       288 G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~  322 (434)
                      +.|++||||.|+|+++++++|+++    |++++..
T Consensus        70 ~~g~~~i~~~v~di~~~~~~l~~~----G~~~~~~  100 (128)
T TIGR03081        70 GGGIHHIAIEVDDIEAALETLKEK----GVRLIDE  100 (128)
T ss_pred             CCceEEEEEEcCCHHHHHHHHHHC----CCcccCC
Confidence            678999999999999999999999    9998864

Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.

>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A

Probab=99.35  E-value=4.2e-12  Score=106.80  Aligned_cols=95  Identities=22%  Similarity=0.181  Sum_probs=76.3

Q ss_pred             EEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCC--EEEEEEcCCCCCCCcccccCCCCCCCCCCCh
Q 013898           34 HHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGD--LRFVFTAPYSPSISDAADAGNSSASLPTFDH  111 (434)
Q Consensus        34 ~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~--i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~  111 (434)
                      |||.|.|+|++++++||++.||++.......+.  ......++..++  +.|+|.+|..+.                   
T Consensus         1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~--~~v~~~~~~~~~~~~~iELi~p~~~~-------------------   59 (109)
T PF13669_consen    1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEP--QGVRVAFLYLGDGPVQIELIQPLDGD-------------------   59 (109)
T ss_dssp             EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGC--TTEEEEEEEETTETEEEEEEEESSTT-------------------
T ss_pred             CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCC--CCEEEEEEEeCCCcEEEEEEEeCCCC-------------------
Confidence            799999999999999999999999776543222  234566667666  799999986532                   


Q ss_pred             hHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCC
Q 013898          112 AACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPP  153 (434)
Q Consensus       112 ~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p  153 (434)
                          +++.++|.|+.||||+|+|++++.+++.++|++++..+
T Consensus        60 ----~~~~~~~~gi~Hia~~v~D~d~~~~~l~~~G~~~~~~~   97 (109)
T PF13669_consen   60 ----SPLDRGGGGIHHIAFEVDDLDAAIARLEAQGFRVLDEG   97 (109)
T ss_dssp             ----CHHHHTSSEEEEEEEEESHHHHHHHHHHHTTECEEECE
T ss_pred             ----cccccCCCCEEEEEEEeCCHHHHHHHHHHCCCEEcccC
Confidence                34667999999999999999999999999999987654

>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE)

Probab=99.34  E-value=2.6e-11  Score=103.15  Aligned_cols=117  Identities=17%  Similarity=0.218  Sum_probs=86.1

Q ss_pred             EEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCChh
Q 013898           33 FHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHA  112 (434)
Q Consensus        33 l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~  112 (434)
                      |+||+|+|+|++++.+||++.|||+.......+.+ .......++.|++.+.|..+....                   +
T Consensus         1 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~-~~~~~~~~~~~~~~l~l~~~~~~~-------------------~   60 (128)
T cd07249           1 IDHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPE-QGVRVAFLGLGNVQIELIEPLDDD-------------------S   60 (128)
T ss_pred             CcEEEEEeCCHHHHHHHHHHhhCCCCccccccCcc-cccEEEEEEcCCEEEEEEEECCCC-------------------C
Confidence            58999999999999999999999999876543200 113356677899999888754321                   1


Q ss_pred             HHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEeecc
Q 013898          113 ACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSYK  179 (434)
Q Consensus       113 ~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd~~  179 (434)
                      ....+...++.|++|++|+|+|+++++++++++|++++.+|...          ..++..+.+++++
T Consensus        61 ~~~~~~~~~~~g~~h~~f~v~d~~~~~~~l~~~G~~~~~~~~~~----------~~~g~~~~~~d~~  117 (128)
T cd07249          61 PIAKFLEKRGEGLHHIAFEVDDIDAALARLKAQGVRLLQEGPRI----------GAGGKRVAFLHPK  117 (128)
T ss_pred             cHHHHHhcCCCceEEEEEEeCCHHHHHHHHHHCCCeeeccCCCc----------cCCCCEEEEEecC
Confidence            12234556778999999999999999999999999987766422          2355566666653

MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.

>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase

Probab=99.34  E-value=3.5e-11  Score=102.65  Aligned_cols=100  Identities=19%  Similarity=0.286  Sum_probs=76.2

Q ss_pred             eEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCCh
Q 013898           32 RFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDH  111 (434)
Q Consensus        32 ~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~  111 (434)
                      +++||.++|+|++++++||++.|||+.......+..  .....+++.|+..+.|..+....                   
T Consensus         1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~--~~~~~~~~~~~~~i~l~~~~~~~-------------------   59 (128)
T TIGR03081         1 RIDHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQ--GVKVVFIALGNTKVELLEPLGED-------------------   59 (128)
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHhCCCCccceeCCCC--CcEEEEEecCCEEEEEEecCCCC-------------------
Confidence            479999999999999999999999998765322121  23456677788888887643211                   


Q ss_pred             hHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCC
Q 013898          112 AACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSP  152 (434)
Q Consensus       112 ~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~  152 (434)
                      +....++..++.|+.+|||+|+|+++++++++++|++++.+
T Consensus        60 ~~~~~~~~~~~~g~~~i~~~v~di~~~~~~l~~~G~~~~~~  100 (128)
T TIGR03081        60 SPIAKFLEKNGGGIHHIAIEVDDIEAALETLKEKGVRLIDE  100 (128)
T ss_pred             ChHHHHHhcCCCceEEEEEEcCCHHHHHHHHHHCCCcccCC
Confidence            12344566677799999999999999999999999998764

Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.

>TIGR03645 glyox_marine lactoylglutathione lyase family protein

Probab=99.33  E-value=1.3e-11  Score=111.57  Aligned_cols=137  Identities=19%  Similarity=0.247  Sum_probs=85.7

Q ss_pred             eeeeeeeEecCCHHHHHHHHHHhhCCeeeeee--ecccC-----------cccccCceEEEEEcCCCceEEEecccCCCC
Q 013898          207 RRLDHAVGNVPELAPAVAYVKSFTGFHEFAEF--TAEDV-----------GTSESGLNSVVLANNDEMVLLPMNEPVFGT  273 (434)
Q Consensus       207 ~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~--~~~d~-----------~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~  273 (434)
                      ++||||+++|+|++++++||+++|||+...+.  ..++.           +.....++...+..+ +...|+|.+...  
T Consensus         3 ~~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~~~ieL~~~~~--   79 (162)
T TIGR03645         3 RTFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTG-DRIGVELFEFKN--   79 (162)
T ss_pred             ceEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecC-CCCcEEEEeccC--
Confidence            57999999999999999999999999874211  00110           001112333344433 345678777642  


Q ss_pred             CCCchHHHHHhhcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeE
Q 013898          274 KRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVL  353 (434)
Q Consensus       274 ~~~s~i~~fl~~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL  353 (434)
                       ..++...+..  .+.|++|+||.|+||++++++|+++    |+.++..+|...+       +    ..     .....+
T Consensus        80 -~~~~~~~~~~--~~~g~~Hla~~v~dida~~~~l~~~----G~~~~~~~~~~~~-------~----~~-----~~~~~~  136 (162)
T TIGR03645        80 -QENPEDNFEY--WKTGVFHFCVQDPDVEGLAERIVAA----GGKKRMPVPRYYY-------P----GE-----KPYRMI  136 (162)
T ss_pred             -CCCCCccccc--ccccceEEEEEcCCHHHHHHHHHHc----CCcccCCCccccC-------C----CC-----CceEEE
Confidence             1222222211  3678999999999999999999999    9876533222110       0    00     012366


Q ss_pred             EecCCCceEEEEEccc
Q 013898          354 VDRDDQGTLLQIFTKP  369 (434)
Q Consensus       354 ~D~d~~g~llqifT~~  369 (434)
                      +-+|++|+++++++++
T Consensus       137 ~~~DPdG~~iEl~~~~  152 (162)
T TIGR03645       137 YMEDPFGNILEIYSHS  152 (162)
T ss_pred             EEECCCCCEEEEEEcC
Confidence            8888899888776655

Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.

>PLN03042 Lactoylglutathione lyase; Provisional

Probab=99.32  E-value=2.4e-11  Score=112.13  Aligned_cols=106  Identities=10%  Similarity=0.268  Sum_probs=73.1

Q ss_pred             eeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcC-----------------CCceEEEeccc
Q 013898          207 RRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANN-----------------DEMVLLPMNEP  269 (434)
Q Consensus       207 ~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~-----------------~g~v~i~L~e~  269 (434)
                      -+++|++|.|+|+++++.||+++|||+...+...++.     +++...+..+                 .....|+|.++
T Consensus        26 ~~~~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~~~~~~-----~~~~~fl~~~~~~~~~~~~~~~~~~l~~~~~~lEL~~~  100 (185)
T PLN03042         26 YIMQQTMFRIKDPKASLDFYSRVLGMSLLKRLDFPEM-----KFSLYFLGYEDSETAPTDPPERTVWTFGRKATIELTHN  100 (185)
T ss_pred             cEEEEEEEeeCCHHHHHHHHHhhcCCEEEEEEEcCCC-----ceEEEEEecCCcccCCcchhhcccccccCCCEEEEEEc
Confidence            4799999999999999999999999998776532111     1222222211                 12357888765


Q ss_pred             CCCCCCCchHHHHHhhc-CCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccC
Q 013898          270 VFGTKRKSQIQTYLEHN-EGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPS  322 (434)
Q Consensus       270 ~~g~~~~s~i~~fl~~~-~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~  322 (434)
                      ... .....+.+|+... .+.|++||||.|+||++++++|+++    |++++..
T Consensus       101 ~~~-~~~p~~~~~~~~~~~~~G~~Hlaf~V~Dvd~~~~~L~~~----Gv~v~~~  149 (185)
T PLN03042        101 WGT-ESDPEFKGYHNGNSDPRGFGHIGITVDDVYKACERFEKL----GVEFVKK  149 (185)
T ss_pred             CCC-cccccccccccCCCCCCCccEEEEEcCCHHHHHHHHHHC----CCeEEeC
Confidence            421 1111234455432 2468999999999999999999999    9999864

>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein

Probab=99.27  E-value=9e-12  Score=105.44  Aligned_cols=128  Identities=23%  Similarity=0.326  Sum_probs=84.8

Q ss_pred             eeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcC
Q 013898          208 RLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNE  287 (434)
Q Consensus       208 ~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~  287 (434)
                      +|+||++.|.|++++++||+++|||+.........   .........+..+...+.+.++....+  ..... .+.. ++
T Consensus         1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~-~~~~-~~   73 (128)
T PF00903_consen    1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDG---EGGDLRIAFLRIGEGHIELFLNPSPPP--RASGH-SFPE-HG   73 (128)
T ss_dssp             EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEES---TTEEEEEEEEESTSSCEEEEEEESSSS--SSEEE-HHHS-HT
T ss_pred             CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeecccc---ccccccceeecccccceeeeeeccccc--ccccc-cccc-cc
Confidence            68999999999999999999999999987654211   112245566677777778877766531  12111 0111 12


Q ss_pred             CCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEEE
Q 013898          288 GAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQI  365 (434)
Q Consensus       288 G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llqi  365 (434)
                      ..|+.|+++.++|+.++.++|++.    |+++...| ..+|..-                  ....|.+|++|++++|
T Consensus        74 ~~~i~~~~~~~~dl~~~~~~l~~~----g~~~~~~~-~~~~~~~------------------~~~~y~~Dp~G~~iE~  128 (128)
T PF00903_consen   74 GHHIAFLAFDVDDLDAAYERLKAQ----GVEIVEEP-DRYYFGS------------------GYSFYFRDPDGNLIEF  128 (128)
T ss_dssp             SEEEEEEESSHHHHHHHHHHHHHT----TGEEEEEE-EEHSTTC------------------EEEEEEEETTSEEEEE
T ss_pred             ceeEEEEeccHHHHHHHHHHHhhc----CccEEecC-CCCCCCC------------------EEEEEEECCCCCEEEC
Confidence            334555555556888999999999    99999764 4432211                  0112689999999885

; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....

>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase

Probab=99.24  E-value=1.8e-10  Score=101.78  Aligned_cols=121  Identities=14%  Similarity=0.143  Sum_probs=78.0

Q ss_pred             cceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHH
Q 013898          204 YGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYL  283 (434)
Q Consensus       204 ~~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl  283 (434)
                      +.+++|+||++.|+|++++++||+++|||+........+ +.   .....++.+.+....+.+..               
T Consensus         2 ~~~~~l~Hv~l~v~Dle~s~~FY~~vLGf~~~~~~~~~~-~~---~~~~~~l~~~~~~h~~~~~~---------------   62 (143)
T cd07243           2 IGAHRLDHCLLTGEDIAETTRFFTDVLDFYLAERVVDPD-GG---TRVGSFLSCSNKPHDIAFVG---------------   62 (143)
T ss_pred             CCCceeCEEEEecCCHHHHHHHHHHhcCCEEEEEEecCC-CC---eEEEEEEecCCCcceEEEec---------------
Confidence            357899999999999999999999999999765432111 10   01122333222211222211               


Q ss_pred             hhcCCCCceEEEEEeCCHHH---HHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCc
Q 013898          284 EHNEGAGVQHLALVSEDIFR---TLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQG  360 (434)
Q Consensus       284 ~~~~G~GvqHIAf~vdDI~~---av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g  360 (434)
                        ..+.|++|+||.|+|+.+   +.++|+++    |+++...| ..        .+          +-...-+|-+|++|
T Consensus        63 --~~~~~~~Hiaf~v~d~~~l~~~~~~l~~~----Gv~i~~~p-~~--------~~----------~~~~~~~yf~DPdG  117 (143)
T cd07243          63 --GPDGKLHHFSFFLESWEDVLKAGDIISMN----DVSIDIGP-TR--------HG----------ITRGQTIYFFDPSG  117 (143)
T ss_pred             --CCCCCceEEEEEcCCHHHHHHHHHHHHHc----CCceEECC-cC--------CC----------CCCceEEEEECCCC
Confidence              123679999999999877   56788888    99876554 11        11          01122468889999


Q ss_pred             eEEEEEcc
Q 013898          361 TLLQIFTK  368 (434)
Q Consensus       361 ~llqifT~  368 (434)
                      ..+++|+.
T Consensus       118 ~~iEl~~~  125 (143)
T cd07243         118 NRNETFAG  125 (143)
T ss_pred             CEEEEecC
Confidence            99999875

This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.

>PLN02875 4-hydroxyphenylpyruvate dioxygenase

Probab=99.24  E-value=6.1e-11  Score=120.83  Aligned_cols=110  Identities=13%  Similarity=0.111  Sum_probs=88.3

Q ss_pred             CCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCC---ceeEEEEEEEe--CCEEEEEEcCCCCCCCcccccCCC
Q 013898           28 FRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTG---NTVHASYLLRS--GDLRFVFTAPYSPSISDAADAGNS  102 (434)
Q Consensus        28 ~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g---~~~~~~~~l~~--G~i~~vl~~p~~~~~~~~~~~~~~  102 (434)
                      ..+.+||||.+.|+++++|+.||+++|||+...+...++.   ...+.+.++..  |.++|.|++|.....         
T Consensus       176 ~gl~~IDHi~iaV~~ld~a~~fY~~vlGf~~~~~~d~~~i~~~~sgl~S~vl~sp~g~v~ipLnEP~~~~~---------  246 (398)
T PLN02875        176 YGLRRLDHAVGNVPNLLPAVNYIAGFTGFHEFAEFTAEDVGTVDSGLNSMVLASNNEMVLLPLNEPTFGTK---------  246 (398)
T ss_pred             CCcceeCcceechhhHHHHHHHHHHhcCCeeeeeeccccccccccceEEEEEEcCCCcEEEEeccCCCCCC---------
Confidence            3578999999999999999999999999998875543321   11256777777  459999999864210         


Q ss_pred             CCCCCCCChhHHhHHHHhcC-CceeEEEEEecCHHHHHHHHHHc----CCCCCCCC
Q 013898          103 SASLPTFDHAACRSFAASHG-LAARSIAVEVEDADVAFNTSVAH----GAKPSSPP  153 (434)
Q Consensus       103 ~~~~~~~~~~~~~~~l~~hG-~gv~~Iaf~V~Dvd~a~~ra~~~----Ga~~~~~p  153 (434)
                             ..|++++||++|+ +||.||||+|+|+.++.++++++    |+..+..|
T Consensus       247 -------~~SqI~eFL~~~~G~GIQHIAl~tdDI~~av~~Lra~~~~~Gv~fL~~P  295 (398)
T PLN02875        247 -------RKSQIQTYLEHNEGPGLQHLALKSDDIFGTLREMRARSHIGGFEFMPPP  295 (398)
T ss_pred             -------CcChHHHHHHhcCCCCeeEEEeecCCHHHHHHHHHhccccCCeecCCCC
Confidence                   0268999999995 89999999999999999999998    88877654

>PRK11478 putative lyase; Provisional

Probab=99.23  E-value=1.4e-10  Score=99.37  Aligned_cols=126  Identities=18%  Similarity=0.258  Sum_probs=80.1

Q ss_pred             ceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHh
Q 013898          205 GIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLE  284 (434)
Q Consensus       205 ~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~  284 (434)
                      .+++++||++.|+|++++++||+++|||+.......++ ..   ..... +.. ++...+.|.+........       .
T Consensus         3 ~i~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~-~~---~~~~~-~~~-~~~~~l~l~~~~~~~~~~-------~   69 (129)
T PRK11478          3 GLKQVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREA-RD---SWKGD-LAL-NGQYVIELFSFPFPPERP-------S   69 (129)
T ss_pred             CcceecEEEEEcCCHHHHHHHHHHHhCCEecccccccc-cc---cceee-Eec-CCCcEEEEEEecCCCCCC-------C
Confidence            47889999999999999999999999999764321010 00   01111 111 234556654421100000       0


Q ss_pred             hcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEE
Q 013898          285 HNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQ  364 (434)
Q Consensus       285 ~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llq  364 (434)
                      .....|++||||.|+|+++++++|+++    |+++...+ ...+      .             ...++|-+|++|+.++
T Consensus        70 ~~~~~g~~hi~f~v~d~~~~~~~l~~~----G~~~~~~~-~~~~------~-------------g~~~~~~~DPdG~~iE  125 (129)
T PRK11478         70 RPEACGLRHLAFSVDDIDAAVAHLESH----NVKCEAIR-VDPY------T-------------QKRFTFFNDPDGLPLE  125 (129)
T ss_pred             CCCCCceeEEEEEeCCHHHHHHHHHHc----CCeeeccc-cCCC------C-------------CCEEEEEECCCCCEEE
Confidence            113467999999999999999999999    99987532 1100      0             1235577899999888


Q ss_pred             EEc
Q 013898          365 IFT  367 (434)
Q Consensus       365 ifT  367 (434)
                      ++-
T Consensus       126 l~~  128 (129)
T PRK11478        126 LYE  128 (129)
T ss_pred             EEe
Confidence            764

>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway

Probab=99.23  E-value=6e-11  Score=106.04  Aligned_cols=123  Identities=17%  Similarity=0.159  Sum_probs=79.2

Q ss_pred             eeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcC
Q 013898          208 RLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNE  287 (434)
Q Consensus       208 ~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~  287 (434)
                      +|+||++.|+|++++++||+++|||+.......+..    .+....++..+++...+          ....+.  +....
T Consensus         1 ri~Hv~l~V~Dle~a~~FY~~~LG~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~----------~~~~~~--l~~~~   64 (153)
T cd07257           1 RLGHVVLEVPDFAASFDWYTETFGLKPSDVIYLPGP----GNPVAAFLRLDRGEEYV----------DHHTLA--LAQGP   64 (153)
T ss_pred             CccEEEEecCCHHHHHHHHHHhcCCeEEeeEecCCC----CCcEEEEEecCCCCCcc----------cchHHH--HhcCC
Confidence            589999999999999999999999997654321100    11222333332221000          111222  22223


Q ss_pred             CCCceEEEEEeCCHHHHH---HHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEE
Q 013898          288 GAGVQHLALVSEDIFRTL---REMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQ  364 (434)
Q Consensus       288 G~GvqHIAf~vdDI~~av---~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llq  364 (434)
                      +.|++||||.|+|++++.   ++|+++    |++++..| ..        -.          .-..-.+|-+|++|++++
T Consensus        65 ~~g~~Hiaf~v~die~~~~~~~~L~~~----Gv~v~~~~-g~--------~~----------~g~~~~~y~~DPdG~~iE  121 (153)
T cd07257          65 ESGVHHAAFEVHDFDAQGLGHDYLREK----GYEHVWGV-GR--------HI----------LGSQIFDYWFDPWGFIVE  121 (153)
T ss_pred             CCceeEEEEEcCCHHHHHHHHHHHHHC----CCcEeecC-Cc--------cC----------CCCCEEEEEECCCCCEEE
Confidence            678999999999999886   999999    99988543 11        00          001124688899999999


Q ss_pred             EEccc
Q 013898          365 IFTKP  369 (434)
Q Consensus       365 ifT~~  369 (434)
                      +|...
T Consensus       122 l~~~~  126 (153)
T cd07257         122 HYTDG  126 (153)
T ss_pred             EEcCc
Confidence            99765

This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.

>PLN02367 lactoylglutathione lyase

Probab=99.21  E-value=3.2e-10  Score=107.46  Aligned_cols=128  Identities=13%  Similarity=0.140  Sum_probs=94.8

Q ss_pred             ceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEe-------------------CCEEEEEEcCCCC
Q 013898           31 NRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRS-------------------GDLRFVFTAPYSP   91 (434)
Q Consensus        31 ~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~-------------------G~i~~vl~~p~~~   91 (434)
                      ..+.|+.+.|.|++++++||+++|||++..+...+++.  ...+.+..                   +...|+|+.+...
T Consensus        74 ~~~~HtmlRVkDle~Sl~FYt~vLGm~ll~r~d~pe~~--f~lyFL~~~~~~~~p~d~~~r~~~~~~~~~~LELt~n~g~  151 (233)
T PLN02367         74 YIMQQTMYRIKDPKASLDFYSRVLGMSLLKRLDFPEMK--FSLYFMGYEDTASAPTDPTERTVWTFGQKATIELTHNWGT  151 (233)
T ss_pred             cEEEEEEEEeCCHHHHHHHHHHhcCCEEeEEEecCCCc--EEEEEeecCCccccccccccceeeccCCCCEEEEecCCCC
Confidence            57999999999999999999999999999877655532  33344421                   2357788765542


Q ss_pred             CCCcccccCCCCCCCCCCChhHHhHHHHhcC--CceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecC
Q 013898           92 SISDAADAGNSSASLPTFDHAACRSFAASHG--LAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYG  169 (434)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~hG--~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~G  169 (434)
                      +.                 .+.+..|....+  .|..||||+|+|++++++++.++|++++..|.... ...++.|++++
T Consensus       152 e~-----------------~~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~erL~a~Gv~~v~~P~~g~-~~riaFIkDPD  213 (233)
T PLN02367        152 ES-----------------DPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFEELGVEFVKKPNDGK-MKGIAFIKDPD  213 (233)
T ss_pred             Cc-----------------cccchhcccCCCCCCCceEEEEEcCCHHHHHHHHHHCCCEEEeCCccCC-ceEEEEEECCC
Confidence            20                 012344555555  49999999999999999999999999887775432 24567788888


Q ss_pred             CeEEEEeec
Q 013898          170 DVVLRYVSY  178 (434)
Q Consensus       170 g~~~~fvd~  178 (434)
                      |..+++++.
T Consensus       214 Gn~IEL~e~  222 (233)
T PLN02367        214 GYWIEIFDL  222 (233)
T ss_pred             CCEEEEEec
Confidence            889999885

>PLN03042 Lactoylglutathione lyase; Provisional

Probab=99.19  E-value=4.2e-10  Score=103.87  Aligned_cols=129  Identities=13%  Similarity=0.138  Sum_probs=90.2

Q ss_pred             cceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEE-------------------eCCEEEEEEcCCC
Q 013898           30 VNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLR-------------------SGDLRFVFTAPYS   90 (434)
Q Consensus        30 i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~-------------------~G~i~~vl~~p~~   90 (434)
                      =..++|+.|+|.|++++++||+++|||++..+...+.+.  ...+++.                   .++..|+|..+..
T Consensus        25 ~~~~~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~~~~~~~--~~~~fl~~~~~~~~~~~~~~~~~~l~~~~~~lEL~~~~~  102 (185)
T PLN03042         25 GYIMQQTMFRIKDPKASLDFYSRVLGMSLLKRLDFPEMK--FSLYFLGYEDSETAPTDPPERTVWTFGRKATIELTHNWG  102 (185)
T ss_pred             CcEEEEEEEeeCCHHHHHHHHHhhcCCEEEEEEEcCCCc--eEEEEEecCCcccCCcchhhcccccccCCCEEEEEEcCC
Confidence            367999999999999999999999999998875543322  2233332                   2445778876543


Q ss_pred             CCCCcccccCCCCCCCCCCChhHHhHHHHhcC--CceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEec
Q 013898           91 PSISDAADAGNSSASLPTFDHAACRSFAASHG--LAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLY  168 (434)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~hG--~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~  168 (434)
                      ...          +       ....+|....+  .|+.||||+|+|++++++++.++|+.+...|... ....+..|+++
T Consensus       103 ~~~----------~-------p~~~~~~~~~~~~~G~~Hlaf~V~Dvd~~~~~L~~~Gv~v~~~p~~~-~~~~~~fi~DP  164 (185)
T PLN03042        103 TES----------D-------PEFKGYHNGNSDPRGFGHIGITVDDVYKACERFEKLGVEFVKKPDDG-KMKGLAFIKDP  164 (185)
T ss_pred             Ccc----------c-------ccccccccCCCCCCCccEEEEEcCCHHHHHHHHHHCCCeEEeCCccC-CceeEEEEECC
Confidence            210          0       01123333332  4899999999999999999999999887666432 12446677888


Q ss_pred             CCeEEEEeec
Q 013898          169 GDVVLRYVSY  178 (434)
Q Consensus       169 Gg~~~~fvd~  178 (434)
                      .|..+.|++.
T Consensus       165 dG~~IEl~e~  174 (185)
T PLN03042        165 DGYWIEIFDL  174 (185)
T ss_pred             CCCEEEEEEC
Confidence            8888888874

>PRK11478 putative lyase; Provisional

Probab=99.19  E-value=3.6e-10  Score=96.87  Aligned_cols=101  Identities=17%  Similarity=0.183  Sum_probs=67.1

Q ss_pred             CCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCC
Q 013898           28 FRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLP  107 (434)
Q Consensus        28 ~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~  107 (434)
                      +.+.+++||.+.|+|++++++||++.|||++......+.. ......+...|+..+.+.+...+..  .+          
T Consensus         2 ~~i~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~-~~~~~~~~~~~~~~l~l~~~~~~~~--~~----------   68 (129)
T PRK11478          2 LGLKQVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREAR-DSWKGDLALNGQYVIELFSFPFPPE--RP----------   68 (129)
T ss_pred             CCcceecEEEEEcCCHHHHHHHHHHHhCCEeccccccccc-ccceeeEecCCCcEEEEEEecCCCC--CC----------
Confidence            3578999999999999999999999999998643211110 0111122224566666654221110  00          


Q ss_pred             CCChhHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCC
Q 013898          108 TFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSS  151 (434)
Q Consensus       108 ~~~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~  151 (434)
                                ...+..|+.||||+|+|+++++++++++|+++..
T Consensus        69 ----------~~~~~~g~~hi~f~v~d~~~~~~~l~~~G~~~~~  102 (129)
T PRK11478         69 ----------SRPEACGLRHLAFSVDDIDAAVAHLESHNVKCEA  102 (129)
T ss_pred             ----------CCCCCCceeEEEEEeCCHHHHHHHHHHcCCeeec
Confidence                      0012347889999999999999999999998653

>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione

Probab=99.18  E-value=2.9e-10  Score=96.02  Aligned_cols=118  Identities=18%  Similarity=0.291  Sum_probs=80.9

Q ss_pred             eeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCC--CceEEEecccCCCCCCCchHHHHHhhc
Q 013898          209 LDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANND--EMVLLPMNEPVFGTKRKSQIQTYLEHN  286 (434)
Q Consensus       209 iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~--g~v~i~L~e~~~g~~~~s~i~~fl~~~  286 (434)
                      |+|+++.|+|++++++||+++|||+..+....++.     +....++..++  +...+.+..+..   ...      ...
T Consensus         1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~l~~~~~---~~~------~~~   66 (121)
T cd07233           1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEG-----KFTLVFLGYPDEDSEGVLELTYNWG---TEE------PYD   66 (121)
T ss_pred             CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCCC-----ceEEEEecCCCCCCccEEEEEecCC---CCC------CcC
Confidence            68999999999999999999999998775432111     12223444444  455666655421   111      012


Q ss_pred             CCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEEE
Q 013898          287 EGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQI  365 (434)
Q Consensus       287 ~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llqi  365 (434)
                      .+.+++|++|.|+||++++++|+++    |+.++..| ...        +            ...+.+-+|++|+.+++
T Consensus        67 ~~~~~~~i~~~v~did~~~~~l~~~----G~~~~~~~-~~~--------~------------~~~~~~~~DpdG~~iE~  120 (121)
T cd07233          67 NGNGFGHLAFAVDDVYAACERLEEM----GVEVTKPP-GDG--------G------------MKGIAFIKDPDGYWIEL  120 (121)
T ss_pred             CCCCeEEEEEEeCCHHHHHHHHHHC----CCEEeeCC-ccC--------C------------CceEEEEECCCCCEEEe
Confidence            3557999999999999999999999    99999753 331        1            11244667788888875

Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly

>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=99.17  E-value=7.4e-10  Score=93.50  Aligned_cols=102  Identities=21%  Similarity=0.261  Sum_probs=68.2

Q ss_pred             cceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCC
Q 013898           30 VNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTF  109 (434)
Q Consensus        30 i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~  109 (434)
                      +.+++||.+.|+|++++++||++.|||+.......+.. ......+...++..+.+.......            ..+  
T Consensus         1 ~~~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~-~~~~~~~~~~~~~~i~l~~~~~~~------------~~~--   65 (125)
T cd08352           1 LFGIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPER-GSYKLDLLLNGGYQLELFSFPNPP------------ERP--   65 (125)
T ss_pred             CCccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCC-CcEEEEEecCCCcEEEEEEcCCCC------------CCC--
Confidence            36899999999999999999999999998765321111 111122222356666655422110            000  


Q ss_pred             ChhHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCc
Q 013898          110 DHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPV  154 (434)
Q Consensus       110 ~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~  154 (434)
                              ....+.|+.|++|+|+|++++++++++.|+++...|.
T Consensus        66 --------~~~~~~g~~h~~~~v~d~~~~~~~l~~~G~~~~~~~~  102 (125)
T cd08352          66 --------SYPEACGLRHLAFSVEDIEAAVKHLKAKGVEVEPIRV  102 (125)
T ss_pred             --------CCCcCCCceEEEEEeCCHHHHHHHHHHcCCccccccc
Confidence                    0012357889999999999999999999998766553

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.

>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp

Probab=99.16  E-value=4.1e-10  Score=98.01  Aligned_cols=117  Identities=22%  Similarity=0.181  Sum_probs=80.2

Q ss_pred             eeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcC--CCceEEEecccCCCCCCCchHHHHHh
Q 013898          207 RRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANN--DEMVLLPMNEPVFGTKRKSQIQTYLE  284 (434)
Q Consensus       207 ~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~--~g~v~i~L~e~~~g~~~~s~i~~fl~  284 (434)
                      .+|+|+++.|+|++++.+||+++|||+......   .       ...++..+  .....+.|....     .        
T Consensus         2 ~~l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~---~-------~~~~~~~~~~~~~~~i~l~~~~-----~--------   58 (134)
T cd08360           2 RRLGHVVLFVPDVEAAEAFYRDRLGFRVSDRFK---G-------RGAFLRAAGGGDHHNLFLIKTP-----A--------   58 (134)
T ss_pred             ceeeEEEEEcCCHHHHHHHHHHhcCCEEEEEec---C-------cEEEEECCCCCCCcEEEEecCC-----C--------
Confidence            579999999999999999999999999765421   0       11233333  233455554431     0        


Q ss_pred             hcCCCCceEEEEEeCCHHHHH---HHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCce
Q 013898          285 HNEGAGVQHLALVSEDIFRTL---REMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGT  361 (434)
Q Consensus       285 ~~~G~GvqHIAf~vdDI~~av---~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~  361 (434)
                        ...|++||||.|+|+.+..   ++|+++    |+++...| ...        .          ....-.+|-+|++|.
T Consensus        59 --~~~g~~hiaf~v~d~~~~~~~~~~l~~~----G~~~~~~~-~~~--------~----------~~~~~~~y~~DP~G~  113 (134)
T cd08360          59 --PMAGFHHAAFEVGDIDEVMLGGNHMLRA----GYQTGWGP-GRH--------R----------IGSNYFWYFRDPWGG  113 (134)
T ss_pred             --CCCcceEEEEEeCCHHHHHHHHHHHHHc----CCccccCC-CCc--------C----------CCccEEEEEECCCCC
Confidence              1468999999999998776   499998    99876543 211        0          001223688999999


Q ss_pred             EEEEEccccC
Q 013898          362 LLQIFTKPVG  371 (434)
Q Consensus       362 llqifT~~~~  371 (434)
                      ++++++....
T Consensus       114 ~iEl~~~~~~  123 (134)
T cd08360         114 EVEYGADMDY  123 (134)
T ss_pred             EEEEEccccc
Confidence            9999986543

NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.

>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp

Probab=99.16  E-value=5.6e-10  Score=101.25  Aligned_cols=124  Identities=15%  Similarity=0.218  Sum_probs=82.2

Q ss_pred             cceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHH
Q 013898          204 YGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYL  283 (434)
Q Consensus       204 ~~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl  283 (434)
                      +.+++|+|+++.|+|++++.+||+++|||+........  ...   ....++........+.+....     .       
T Consensus         2 ~~i~~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~~~~~--~~~---~~~~~~~~~~~~~~i~l~~~~-----~-------   64 (166)
T cd09014           2 VGVRRLDHVNLLASDVDANRDFMEEVLGFRLREQIRLD--NGK---EAGAWMSVSNKVHDVAYTRDP-----A-------   64 (166)
T ss_pred             CCcceeeeEEEEcCCHHHHHHHHHHccCCEEEEEEecC--CCc---eEEEEEeCCCCceeEEEecCC-----C-------
Confidence            46889999999999999999999999999986543211  110   112333333333444442221     0       


Q ss_pred             hhcCCCCceEEEEEeCCH---HHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCc
Q 013898          284 EHNEGAGVQHLALVSEDI---FRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQG  360 (434)
Q Consensus       284 ~~~~G~GvqHIAf~vdDI---~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g  360 (434)
                        ....+++||||.|+|+   ++.+++|+++    |++++..| ...        +          ....-.+|-.|++|
T Consensus        65 --~~~~~~~hiaf~v~~~~~l~~~~~~l~~~----Gv~i~~~p-~~~--------~----------~~~~~~~y~~DPdG  119 (166)
T cd09014          65 --GARGRLHHLAYALDTREDVLRAADIFLEN----GIFIEAGP-GKH--------G----------IQQTFFLYVYEPGG  119 (166)
T ss_pred             --CCCCCceEEEEECCCHHHHHHHHHHHHHc----CCccccCC-ccc--------C----------CCCceEEEEECCCC
Confidence              0124699999999865   4778899999    99987543 221        1          01122468899999


Q ss_pred             eEEEEEccc
Q 013898          361 TLLQIFTKP  369 (434)
Q Consensus       361 ~llqifT~~  369 (434)
                      +++++++.+
T Consensus       120 ~~iEl~~~~  128 (166)
T cd09014         120 NRVELFGGG  128 (166)
T ss_pred             CEEEEEEcC
Confidence            999999983

JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th

>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1

Probab=99.13  E-value=4.9e-10  Score=100.26  Aligned_cols=123  Identities=18%  Similarity=0.149  Sum_probs=79.1

Q ss_pred             eeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhh
Q 013898          206 IRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEH  285 (434)
Q Consensus       206 l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~  285 (434)
                      -++|+||+++|+|++++.+||+++|||+.........+  ...+....++..+.....+.+....               
T Consensus         7 ~~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~i~~~~~~---------------   69 (154)
T cd07237           7 DQGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLP--PGPTARVTFLHCNGRHHSLALAEGP---------------   69 (154)
T ss_pred             CCccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCC--CCCcceEEEEEeCCCCCCEEEEcCC---------------
Confidence            46899999999999999999999999997654221100  0011222233332222233332210               


Q ss_pred             cCCCCceEEEEEeCCHH---HHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceE
Q 013898          286 NEGAGVQHLALVSEDIF---RTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTL  362 (434)
Q Consensus       286 ~~G~GvqHIAf~vdDI~---~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~l  362 (434)
                       .+.|++||||.|+|++   +++++|+++    |+++...| ..        .+          ....-.+|-+|++|.+
T Consensus        70 -~~~g~~Hiaf~V~d~~~l~~~~~~L~~~----G~~v~~~~-~~--------~~----------~~~~~~~y~~DPdG~~  125 (154)
T cd07237          70 -GPKRIHHLMLEVTSLDDVGRAYDRVRAR----GIPIAMTL-GR--------HT----------NDRMLSFYVRTPSGFA  125 (154)
T ss_pred             -CCceeEEEEEEcCCHHHHHHHHHHHHHc----CCceeccC-Cc--------cC----------CCCcEEEEEECCCCcE
Confidence             2467999999998765   588999999    99988643 21        01          0111235778999999


Q ss_pred             EEEEccc
Q 013898          363 LQIFTKP  369 (434)
Q Consensus       363 lqifT~~  369 (434)
                      +++++..
T Consensus       126 iEl~~~~  132 (154)
T cd07237         126 IEYGWGG  132 (154)
T ss_pred             EEeccCc
Confidence            9998774

13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi

>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE)

Probab=99.12  E-value=6.1e-10  Score=94.69  Aligned_cols=101  Identities=26%  Similarity=0.454  Sum_probs=74.8

Q ss_pred             eeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcCC
Q 013898          209 LDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEG  288 (434)
Q Consensus       209 iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G  288 (434)
                      |+||++.|+|++++.+||+++|||+........+    ..+....++..  +...+.|..+..   ..+....+... .+
T Consensus         1 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~----~~~~~~~~~~~--~~~~l~l~~~~~---~~~~~~~~~~~-~~   70 (128)
T cd07249           1 IDHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPP----EQGVRVAFLGL--GNVQIELIEPLD---DDSPIAKFLEK-RG   70 (128)
T ss_pred             CcEEEEEeCCHHHHHHHHHHhhCCCCccccccCc----ccccEEEEEEc--CCEEEEEEEECC---CCCcHHHHHhc-CC
Confidence            6899999999999999999999999986543210    11233344443  456777776642   23344445443 57


Q ss_pred             CCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCC
Q 013898          289 AGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSP  323 (434)
Q Consensus       289 ~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~p  323 (434)
                      .|++|+||.|+|+++++++|+++    |++++..|
T Consensus        71 ~g~~h~~f~v~d~~~~~~~l~~~----G~~~~~~~  101 (128)
T cd07249          71 EGLHHIAFEVDDIDAALARLKAQ----GVRLLQEG  101 (128)
T ss_pred             CceEEEEEEeCCHHHHHHHHHHC----CCeeeccC
Confidence            99999999999999999999999    99998743

MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.

>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=99.09  E-value=1.5e-09  Score=91.68  Aligned_cols=100  Identities=17%  Similarity=0.213  Sum_probs=65.7

Q ss_pred             eeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhh
Q 013898          206 IRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEH  285 (434)
Q Consensus       206 l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~  285 (434)
                      +++|+||++.|+|++++++||+++|||+........+    .. .....+.. ++...+.|.....  ....     ...
T Consensus         1 ~~~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~----~~-~~~~~~~~-~~~~~i~l~~~~~--~~~~-----~~~   67 (125)
T cd08352           1 LFGIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPE----RG-SYKLDLLL-NGGYQLELFSFPN--PPER-----PSY   67 (125)
T ss_pred             CCccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCC----CC-cEEEEEec-CCCcEEEEEEcCC--CCCC-----CCC
Confidence            4689999999999999999999999999765422111    01 11122222 2334455443221  0000     011


Q ss_pred             cCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccC
Q 013898          286 NEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPS  322 (434)
Q Consensus       286 ~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~  322 (434)
                      ..+.|++|+||.|+|++++.++|+++    |+.+...
T Consensus        68 ~~~~g~~h~~~~v~d~~~~~~~l~~~----G~~~~~~  100 (125)
T cd08352          68 PEACGLRHLAFSVEDIEAAVKHLKAK----GVEVEPI  100 (125)
T ss_pred             CcCCCceEEEEEeCCHHHHHHHHHHc----CCccccc
Confidence            13568999999999999999999999    9988764

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.

>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=99.08  E-value=1.1e-09  Score=92.75  Aligned_cols=98  Identities=16%  Similarity=0.231  Sum_probs=66.5

Q ss_pred             eeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcC
Q 013898          208 RLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNE  287 (434)
Q Consensus       208 ~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~  287 (434)
                      +++|+++.|+|++++++||+++|||+.......+     ..+....++..+ +...+.|.+...  .....     ...+
T Consensus         1 ~~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~-----~~~~~~~~~~~~-~~~~~~l~~~~~--~~~~~-----~~~~   67 (125)
T cd07241           1 KIEHVAIWTKDLERMKAFYVTYFGATSNEKYHNP-----RKGFESYFLSFD-DGARLELMTRPD--IAPSP-----NEGE   67 (125)
T ss_pred             CceEEEEEecCHHHHHHHHHHHhCCEeeceEeCC-----CCCceEEEEecC-CCcEEEEEcCcc--cCCCc-----ccCC
Confidence            4789999999999999999999999975433211     122344445433 345667654321  01110     1123


Q ss_pred             CCCceEEEEEeC---CHHHHHHHHHHhcCCCCceeccC
Q 013898          288 GAGVQHLALVSE---DIFRTLREMRKRSGVGGFEFMPS  322 (434)
Q Consensus       288 G~GvqHIAf~vd---DI~~av~~L~~~~~~~Gv~fl~~  322 (434)
                      ..|++||||.|+   |+++.+++|+++    |++++..
T Consensus        68 ~~g~~hi~f~v~~~~~v~~~~~~l~~~----g~~~~~~  101 (125)
T cd07241          68 RTGWAHLAFSVGSKEAVDELTERLRAD----GYLIIGE  101 (125)
T ss_pred             CCceEEEEEECCCHHHHHHHHHHHHHC----CCEEEeC
Confidence            467999999995   589999999999    9998864

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.

>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC)

Probab=99.08  E-value=1.9e-09  Score=92.63  Aligned_cols=117  Identities=13%  Similarity=0.148  Sum_probs=81.0

Q ss_pred             ceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHh
Q 013898          205 GIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLE  284 (434)
Q Consensus       205 ~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~  284 (434)
                      .+.+|+||++.|+|++++.+||+++|||++.....          . ..++..++....+.+...               
T Consensus         3 ~~~~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~~----------~-~~~l~~~~~~~~i~l~~~---------------   56 (124)
T cd08361           3 ELQDIAYVRLGTRDLAGATRFATDILGLQVAERTA----------K-ATYFRSDARDHTLVYIEG---------------   56 (124)
T ss_pred             eEEEeeEEEEeeCCHHHHHHHHHhccCceeccCCC----------C-eEEEEcCCccEEEEEEeC---------------
Confidence            47899999999999999999999999999864321          0 123443333344554322               


Q ss_pred             hcCCCCceEEEEEeCC---HHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCce
Q 013898          285 HNEGAGVQHLALVSED---IFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGT  361 (434)
Q Consensus       285 ~~~G~GvqHIAf~vdD---I~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~  361 (434)
                         .++.+|+||.|+|   ++++.++|+++    |+++...| ..     ..+..           -....+|-+|++|.
T Consensus        57 ---~~~~~~iaf~v~~~~dv~~~~~~l~~~----G~~~~~~~-~~-----~~~~~-----------~~~~~~~f~DPdG~  112 (124)
T cd08361          57 ---DPAEQASGFELRDDDALESAATELEQY----GHEVRRGT-AE-----ECELR-----------KVKAFIAFRDPSGN  112 (124)
T ss_pred             ---CCceEEEEEEECCHHHHHHHHHHHHHc----CCceEEcC-HH-----HhhcC-----------CcceEEEEECcCCC
Confidence               1446899999986   99999999999    99887543 11     00000           00124578999999


Q ss_pred             EEEEEccccC
Q 013898          362 LLQIFTKPVG  371 (434)
Q Consensus       362 llqifT~~~~  371 (434)
                      .+.+|..|..
T Consensus       113 ~iE~~~~~~~  122 (124)
T cd08361         113 SIELVVRPSH  122 (124)
T ss_pred             EEEEEEeeec
Confidence            9999988753

This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.

>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins

Probab=99.08  E-value=1e-09  Score=98.64  Aligned_cols=117  Identities=16%  Similarity=0.116  Sum_probs=79.5

Q ss_pred             eeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcC-CCceEEEecccCCCCCCCchHHHHHhhc
Q 013898          208 RLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANN-DEMVLLPMNEPVFGTKRKSQIQTYLEHN  286 (434)
Q Consensus       208 ~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~-~g~v~i~L~e~~~g~~~~s~i~~fl~~~  286 (434)
                      +|+||++.|+|++++.+||+++|||+......    .     . ..+...+ .....|.|......  ..       ...
T Consensus         1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~----~-----~-~~~~~~~~~~~~~l~l~~~~~~--~~-------~~~   61 (157)
T cd08347           1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEEG----D-----R-VRLEEGGGGPGAVVDVLEEPDQ--PR-------GRP   61 (157)
T ss_pred             CcccEEEEeCCHHHHHHHHHHhcCCEEEeeeC----C-----E-EEEEecCCCCCCEEEEEeCCCC--CC-------Ccc
Confidence            47999999999999999999999999876532    0     1 1122221 12456777654210  00       011


Q ss_pred             CCCCceEEEEEeCC---HHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEE
Q 013898          287 EGAGVQHLALVSED---IFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLL  363 (434)
Q Consensus       287 ~G~GvqHIAf~vdD---I~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~ll  363 (434)
                      +..|++||||.|+|   ++++.++|+++    |+.+.. + ..+        +            ....+|-+|++|.++
T Consensus        62 ~~~~l~Hiaf~v~d~~dvd~~~~~L~~~----Gv~~~~-~-~~~--------~------------~~~s~yf~DPdG~~i  115 (157)
T cd08347          62 GAGTVHHVAFRVPDDEELEAWKERLEAL----GLPVSG-I-VDR--------F------------YFKSLYFREPGGILF  115 (157)
T ss_pred             cCCceEEEEEECCCHHHHHHHHHHHHHC----CCCccc-c-ccc--------c------------cEEEEEEECCCCcEE
Confidence            23569999999998   89999999999    987542 2 211        0            012468899999999


Q ss_pred             EEEccc
Q 013898          364 QIFTKP  369 (434)
Q Consensus       364 qifT~~  369 (434)
                      ++++.+
T Consensus       116 El~~~~  121 (157)
T cd08347         116 EIATDG  121 (157)
T ss_pred             EEEECC
Confidence            999865

The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.

>TIGR00068 glyox_I lactoylglutathione lyase

Probab=99.08  E-value=1.5e-09  Score=96.40  Aligned_cols=127  Identities=17%  Similarity=0.273  Sum_probs=81.6

Q ss_pred             ceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCC--CceEEEecccCCCCCCCchHHHH
Q 013898          205 GIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANND--EMVLLPMNEPVFGTKRKSQIQTY  282 (434)
Q Consensus       205 ~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~--g~v~i~L~e~~~g~~~~s~i~~f  282 (434)
                      ..++|+|+.+.|+|++++..||+++|||+.....+.  +..   +.....+..++  ....+.+.....   ..      
T Consensus        14 ~~~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~l~~~~~~~---~~------   79 (150)
T TIGR00068        14 KKRRLLHTMLRVGDLDKSLDFYTEVLGMKLLRKRDF--PEM---KFSLAFLGYGDETSAAVIELTHNWG---TE------   79 (150)
T ss_pred             CCceEEEEEEEecCHHHHHHHHHHhcCCEEEEEecc--CCC---ceEEEEecCCCCCCccEEEEeecCC---CC------
Confidence            568999999999999999999999999998654321  110   11122222221  223444433221   00      


Q ss_pred             HhhcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceE
Q 013898          283 LEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTL  362 (434)
Q Consensus       283 l~~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~l  362 (434)
                       ....+.|++|++|.|+||++++++|+++    |++++..| ... .      .           ....+.|-+|++|+.
T Consensus        80 -~~~~~~g~~hi~f~v~dld~~~~~l~~~----G~~~~~~~-~~~-~------~-----------~~~~~~~~~DPdG~~  135 (150)
T TIGR00068        80 -KYDLGNGFGHIAIGVDDVYKACERVRAL----GGNVVREP-GPV-K------G-----------GTTVIAFVEDPDGYK  135 (150)
T ss_pred             -cccCCCceeEEEEecCCHHHHHHHHHHc----CCccccCC-ccc-C------C-----------CceEEEEEECCCCCE
Confidence             0123568999999999999999999999    99988643 110 0      0           011244568888988


Q ss_pred             EEEEccc
Q 013898          363 LQIFTKP  369 (434)
Q Consensus       363 lqifT~~  369 (434)
                      +++++..
T Consensus       136 iel~~~~  142 (150)
T TIGR00068       136 IELIQRK  142 (150)
T ss_pred             EEEEECC
Confidence            8777654

Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.

>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases

Probab=99.07  E-value=1.6e-09  Score=97.60  Aligned_cols=121  Identities=23%  Similarity=0.306  Sum_probs=77.4

Q ss_pred             eeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhc
Q 013898          207 RRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHN  286 (434)
Q Consensus       207 ~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~  286 (434)
                      ++|+||++.|+|++++++||+++|||+.......+ .+    .....++........+.+..                 .
T Consensus         2 ~~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~~~~~~-~~----~~~~~~l~~~~~~~~i~l~~-----------------~   59 (161)
T cd07256           2 QRLDHFNLRVPDVDAGLAYYRDELGFRVSEYTEDD-DG----TTWAAWLHRKGGVHDTALTG-----------------G   59 (161)
T ss_pred             ceEEEEEEecCCHHHHHHHHHhccCCEEEEEeccC-CC----cEEEEEEecCCCcceEEEec-----------------C
Confidence            57999999999999999999999999976433211 11    01112232222222233221                 1


Q ss_pred             CCCCceEEEEEeCC---HHHHHHHHHHhcCCCCcee-ccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceE
Q 013898          287 EGAGVQHLALVSED---IFRTLREMRKRSGVGGFEF-MPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTL  362 (434)
Q Consensus       287 ~G~GvqHIAf~vdD---I~~av~~L~~~~~~~Gv~f-l~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~l  362 (434)
                      .++|++|+||.|+|   +.+++++|+++    |+.. +..+|.        +.+          ......+|-+|++|.+
T Consensus        60 ~~~~~~Hiaf~v~~~~~v~~~~~~L~~~----G~~~~~~~~p~--------~~g----------~~~~~~~y~~DPdG~~  117 (161)
T cd07256          60 NGPRLHHVAFWVPEPHNIIRTCDLLAAA----GYSDRIERGPG--------RHG----------ISNAFFLYLRDPDGHR  117 (161)
T ss_pred             CCCceeEEEEEcCCHHHHHHHHHHHHHc----CCCcccccCCC--------ccC----------CCCceEEEEECCCCCe
Confidence            35689999999986   77788899998    9863 211111        011          0112246788999999


Q ss_pred             EEEEccccC
Q 013898          363 LQIFTKPVG  371 (434)
Q Consensus       363 lqifT~~~~  371 (434)
                      +++++.+..
T Consensus       118 iEl~~~~~~  126 (161)
T cd07256         118 IEIYTGDYY  126 (161)
T ss_pred             EEEeecCce
Confidence            999987754

This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of

>PRK04101 fosfomycin resistance protein FosB; Provisional

Probab=99.07  E-value=3.8e-09  Score=92.59  Aligned_cols=115  Identities=10%  Similarity=0.049  Sum_probs=77.3

Q ss_pred             cceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCC
Q 013898           30 VNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTF  109 (434)
Q Consensus        30 i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~  109 (434)
                      +.+++||.+.|+|++++.+||++.|||+++.+.+        ....++.++..+.+..+...     +            
T Consensus         2 i~~i~hi~L~v~Dl~~s~~FY~~~lG~~~~~~~~--------~~~~~~~~g~~l~l~~~~~~-----~------------   56 (139)
T PRK04101          2 LKGINHICFSVSNLEKSIEFYEKVLGAKLLVKGR--------KTAYFDLNGLWIALNEEKDI-----P------------   56 (139)
T ss_pred             CCcEEEEEEEecCHHHHHHHHHhccCCEEEeecC--------eeEEEecCCeEEEeeccCCC-----C------------
Confidence            6789999999999999999999999999876522        23445667777776532110     0            


Q ss_pred             ChhHHhHHHHhcCCceeEEEEEec--CHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEee
Q 013898          110 DHAACRSFAASHGLAARSIAVEVE--DADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVS  177 (434)
Q Consensus       110 ~~~~~~~~l~~hG~gv~~Iaf~V~--Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd  177 (434)
                            .  ...+.+..|+||.|+  |+++++++++++|+++...|...........++++.|..+++..
T Consensus        57 ------~--~~~~~~~~hiaf~v~~~dv~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~DPdGn~iEl~~  118 (139)
T PRK04101         57 ------R--NEIHQSYTHIAFSIEEEDFDHWYQRLKENDVNILPGRERDERDKKSIYFTDPDGHKFEFHT  118 (139)
T ss_pred             ------C--ccCCCCeeEEEEEecHHHHHHHHHHHHHCCceEcCCccccCCCceEEEEECCCCCEEEEEe
Confidence                  0  011246789999998  99999999999999876655332112223334444554555443

>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1

Probab=99.06  E-value=2.8e-09  Score=92.55  Aligned_cols=122  Identities=16%  Similarity=0.146  Sum_probs=81.0

Q ss_pred             eeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhh
Q 013898          206 IRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEH  285 (434)
Q Consensus       206 l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~  285 (434)
                      +.+|+|+++.|+|++++++||+++|||++..+......    ......+...  +...+.+..+..    .         
T Consensus         2 i~~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~~~~~~~----~~~~~~~~~~--~~~~i~l~~~~~----~---------   62 (131)
T cd08364           2 IEGLSHITLIVKDLNKTTAFLQNIFNAREVYSSGDKTF----SLSKEKFFLI--GGLWIAIMEGDS----L---------   62 (131)
T ss_pred             cccEeEEEEEeCCHHHHHHHHHHHhCCeeEEecccccc----cccceeEEEc--CCeEEEEecCCC----C---------
Confidence            56899999999999999999999999987654321100    0001111212  234566654321    1         


Q ss_pred             cCCCCceEEEEEeC--CHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEE
Q 013898          286 NEGAGVQHLALVSE--DIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLL  363 (434)
Q Consensus       286 ~~G~GvqHIAf~vd--DI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~ll  363 (434)
                       ...+++||||.|+  |+++..++|+++    |+++...  .....      +            ...-+|-+|++|.++
T Consensus        63 -~~~~~~Hiaf~v~~~~ld~~~~~l~~~----gv~~~~~--~~~~~------~------------~g~~~yf~DPdG~~i  117 (131)
T cd08364          63 -QERTYNHIAFKISDSDVDEYTERIKAL----GVEMKPP--RPRVQ------G------------EGRSIYFYDFDNHLF  117 (131)
T ss_pred             -CCCCceEEEEEcCHHHHHHHHHHHHHC----CCEEecC--Ccccc------C------------CceEEEEECCCCCEE
Confidence             1246999999998  799999999999    9987642  22110      0            012467899999999


Q ss_pred             EEEccccC
Q 013898          364 QIFTKPVG  371 (434)
Q Consensus       364 qifT~~~~  371 (434)
                      ++++..+-
T Consensus       118 El~~~~~~  125 (131)
T cd08364         118 ELHTGTLE  125 (131)
T ss_pred             EEecCCHH
Confidence            99987654

This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.

>TIGR03645 glyox_marine lactoylglutathione lyase family protein

Probab=99.06  E-value=6.2e-09  Score=93.99  Aligned_cols=129  Identities=14%  Similarity=0.075  Sum_probs=84.1

Q ss_pred             cceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEec--CCC------------C--ceeEEEEEEEeC-CEEEEEEcCCCCC
Q 013898           30 VNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSD--LST------------G--NTVHASYLLRSG-DLRFVFTAPYSPS   92 (434)
Q Consensus        30 i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~--~~~------------g--~~~~~~~~l~~G-~i~~vl~~p~~~~   92 (434)
                      .++++||.+.|+|++++++||+++|||+.+.+..  .+.            +  ........++.+ +..|.|.+...+.
T Consensus         2 ~~~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ieL~~~~~~~   81 (162)
T TIGR03645         2 PRTFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGDRIGVELFEFKNQE   81 (162)
T ss_pred             CceEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCCCCcEEEEeccCCC
Confidence            3689999999999999999999999998764210  000            0  011334445533 4567777654322


Q ss_pred             CCcccccCCCCCCCCCCChhHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCC-ccc-cC--ceEEEEEEec
Q 013898           93 ISDAADAGNSSASLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPP-VIL-DN--LAVIAEVQLY  168 (434)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p-~~~-~~--~~~~~~i~~~  168 (434)
                      .   |                ...+ ..++.|..|+||.|+|+++++++++++|++.+..+ ... .+  ......++++
T Consensus        82 ~---~----------------~~~~-~~~~~g~~Hla~~v~dida~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~DP  141 (162)
T TIGR03645        82 N---P----------------EDNF-EYWKTGVFHFCVQDPDVEGLAERIVAAGGKKRMPVPRYYYPGEKPYRMIYMEDP  141 (162)
T ss_pred             C---C----------------Cccc-ccccccceEEEEEcCCHHHHHHHHHHcCCcccCCCccccCCCCCceEEEEEECC
Confidence            1   0                0111 12457899999999999999999999998764432 211 11  1345567777


Q ss_pred             CCeEEEEeec
Q 013898          169 GDVVLRYVSY  178 (434)
Q Consensus       169 Gg~~~~fvd~  178 (434)
                      .|..+.++++
T Consensus       142 dG~~iEl~~~  151 (162)
T TIGR03645       142 FGNILEIYSH  151 (162)
T ss_pred             CCCEEEEEEc
Confidence            7878888875

Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.

>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase

Probab=99.05  E-value=2.3e-09  Score=91.19  Aligned_cols=113  Identities=15%  Similarity=0.173  Sum_probs=76.4

Q ss_pred             eeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcC--CCceEEEecccCCCCCCCchHHHHH
Q 013898          206 IRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANN--DEMVLLPMNEPVFGTKRKSQIQTYL  283 (434)
Q Consensus       206 l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~--~g~v~i~L~e~~~g~~~~s~i~~fl  283 (434)
                      +.+|+|+++.|+|++++.+||+++|||+......    ..      ...+...  .+...+.+...              
T Consensus         2 ~~~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~----~~------~~~~~~~~~~~~~~~~l~~~--------------   57 (122)
T cd07265           2 VLRPGHVQLRVLDLEEAIKHYREVLGLDEVGRDD----QG------RVYLKAWDEFDHHSIVLREA--------------   57 (122)
T ss_pred             cceEeEEEEEeCCHHHHHHHHHhccCCEeeeecC----Cc------eEEEEccCCCcccEEEeccC--------------
Confidence            5789999999999999999999999999765421    00      1122221  12233333211              


Q ss_pred             hhcCCCCceEEEEEeC---CHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCc
Q 013898          284 EHNEGAGVQHLALVSE---DIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQG  360 (434)
Q Consensus       284 ~~~~G~GvqHIAf~vd---DI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g  360 (434)
                         ...|++|+||.|+   |+++..++|+++    |+++...|+...       .+            --..+|-+|++|
T Consensus        58 ---~~~~~~hiaf~v~~~~dv~~~~~~l~~~----G~~~~~~~~~~~-------~~------------~~~~~~~~DPdG  111 (122)
T cd07265          58 ---DTAGLDFMGFKVLDDADLEKLEARLQAY----GVAVERIPAGEL-------PG------------VGRRVRFQLPSG  111 (122)
T ss_pred             ---CCCCeeEEEEEeCCHHHHHHHHHHHHHC----CCcEEEcccCCC-------CC------------CceEEEEECCCC
Confidence               2357999999997   899999999999    999876541110       00            001357789999


Q ss_pred             eEEEEEcc
Q 013898          361 TLLQIFTK  368 (434)
Q Consensus       361 ~llqifT~  368 (434)
                      ..+++|..
T Consensus       112 ~~iE~~~~  119 (122)
T cd07265         112 HTMELYAD  119 (122)
T ss_pred             CEEEEEEe
Confidence            99988764

This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do

>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1

Probab=99.05  E-value=3.9e-09  Score=89.91  Aligned_cols=115  Identities=12%  Similarity=0.117  Sum_probs=79.5

Q ss_pred             eeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhc
Q 013898          207 RRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHN  286 (434)
Q Consensus       207 ~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~  286 (434)
                      ++|.||++.|+|++++.+||+++|||+..+...    .      ...++..++....+.|....                
T Consensus         1 ~~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~~----~------~~~~~~~~~~~~~~~l~~~~----------------   54 (120)
T cd07252           1 KSLGYLGVESSDLDAWRRFATDVLGLQVGDRPE----D------GALYLRMDDRAWRIAVHPGE----------------   54 (120)
T ss_pred             CcccEEEEEeCCHHHHHHHHHhccCceeccCCC----C------CeEEEEccCCceEEEEEeCC----------------
Confidence            368899999999999999999999999764311    0      11234444344566664321                


Q ss_pred             CCCCceEEEEEeC---CHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEE
Q 013898          287 EGAGVQHLALVSE---DIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLL  363 (434)
Q Consensus       287 ~G~GvqHIAf~vd---DI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~ll  363 (434)
                       ..+..|+||.++   |+++.+++|+++    |+++...|+...    ..+ +            -...++-+|++|..+
T Consensus        55 -~~~~~~~~f~v~~~~dl~~~~~~l~~~----Gv~~~~~~~~~~----~~~-~------------~~~~~~~~DPdG~~i  112 (120)
T cd07252          55 -ADDLAYAGWEVADEAALDALAARLRAA----GVAVEEGSAELA----AER-G------------VEGLIRFADPDGNRH  112 (120)
T ss_pred             -CCceeEEEEEECCHHHHHHHHHHHHHc----CCeEEEcCHHHH----hhC-C------------CcEEEEEECCCCCEE
Confidence             246889999997   488999999999    999886541110    000 0            012567889999999


Q ss_pred             EEEccc
Q 013898          364 QIFTKP  369 (434)
Q Consensus       364 qifT~~  369 (434)
                      ++++-+
T Consensus       113 E~~~~~  118 (120)
T cd07252         113 ELFWGP  118 (120)
T ss_pred             EEEecc
Confidence            999765

13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-

>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=99.04  E-value=2.6e-09  Score=91.35  Aligned_cols=121  Identities=25%  Similarity=0.331  Sum_probs=82.2

Q ss_pred             eeeeeeEecCCHHHHHHHHHHhh---CCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHh
Q 013898          208 RLDHAVGNVPELAPAVAYVKSFT---GFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLE  284 (434)
Q Consensus       208 ~iDHv~i~V~dl~~~~~fY~~vL---Gf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~  284 (434)
                      +|+||++.|+|++++.+||+++|   ||+......  . .     . .+ ... .+...|.|..+..   ..+.   +..
T Consensus         1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~--~-~-----~-~~-~~~-~~~~~i~l~~~~~---~~~~---~~~   63 (128)
T cd07242           1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWE--D-G-----R-SW-RAG-DGGTYLVLQQADG---ESAG---RHD   63 (128)
T ss_pred             CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeec--c-C-----c-eE-Eec-CCceEEEEEeccc---CCCc---ccc
Confidence            58999999999999999999999   999876531  1 0     1 11 111 3457777776642   1111   122


Q ss_pred             hcCCCCceEEEEEeC---CHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCce
Q 013898          285 HNEGAGVQHLALVSE---DIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGT  361 (434)
Q Consensus       285 ~~~G~GvqHIAf~vd---DI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~  361 (434)
                       ..+.|++|+||.|+   ||+++.++|+++    |+++...| ...+      ..          -.....+|-+|++|.
T Consensus        64 -~~~~g~~hia~~v~~~~d~~~~~~~l~~~----g~~~~~~~-~~~~------~~----------~~~~~~~~~~DpdG~  121 (128)
T cd07242          64 -RRNPGLHHLAFRAPSREAVDELYARLAKR----GAEILYAP-REPY------AG----------GPGYYALFFEDPDGI  121 (128)
T ss_pred             -cCCcCeeEEEEEcCCHHHHHHHHHHHHHc----CCeEecCC-cccc------cC----------CCcEEEEEEECCCCc
Confidence             24678999999997   488999999999    99998754 3211      00          001124567788999


Q ss_pred             EEEEEc
Q 013898          362 LLQIFT  367 (434)
Q Consensus       362 llqifT  367 (434)
                      ++++++
T Consensus       122 ~ie~~~  127 (128)
T cd07242         122 RLELVA  127 (128)
T ss_pred             EEEEEe
Confidence            998876

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.

>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein

Probab=99.04  E-value=1.4e-09  Score=91.87  Aligned_cols=107  Identities=21%  Similarity=0.246  Sum_probs=70.9

Q ss_pred             eEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCCh
Q 013898           32 RFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDH  111 (434)
Q Consensus        32 ~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~  111 (434)
                      +|+||.++|+|++++.+||++.|||+++................++.++..+.+.....+...                .
T Consensus         1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------------~   64 (128)
T PF00903_consen    1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIGEGHIELFLNPSPPPR----------------A   64 (128)
T ss_dssp             EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEESTSSCEEEEEEESSSSS----------------S
T ss_pred             CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeecccccceeeeeecccccc----------------c
Confidence            689999999999999999999999999987652112234556777776655544432221100                0


Q ss_pred             hHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCcc
Q 013898          112 AACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVI  155 (434)
Q Consensus       112 ~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~  155 (434)
                      . ...+...++.++.++++.++|++++++++++.|+++...|..
T Consensus        65 ~-~~~~~~~~~~~i~~~~~~~~dl~~~~~~l~~~g~~~~~~~~~  107 (128)
T PF00903_consen   65 S-GHSFPEHGGHHIAFLAFDVDDLDAAYERLKAQGVEIVEEPDR  107 (128)
T ss_dssp             E-EEHHHSHTSEEEEEEESSHHHHHHHHHHHHHTTGEEEEEEEE
T ss_pred             c-ccccccccceeEEEEeccHHHHHHHHHHHhhcCccEEecCCC
Confidence            0 011111133466667777778999999999999887766643

; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....

>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins

Probab=99.03  E-value=3.1e-09  Score=94.09  Aligned_cols=113  Identities=17%  Similarity=0.232  Sum_probs=76.7

Q ss_pred             eeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcC
Q 013898          208 RLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNE  287 (434)
Q Consensus       208 ~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~  287 (434)
                      +++|+.+.|+|++++.+||+++|||+......          -...++..+.....+.+...                 .
T Consensus         4 ~l~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~----------~~~~~l~~~~~~~~~~l~~~-----------------~   56 (144)
T cd07239           4 KISHVVLNSPDVDKTVAFYEDVLGFRVSDWLG----------DQMAFLRCNSDHHSIAIARG-----------------P   56 (144)
T ss_pred             eeeEEEEECCCHHHHHHHHHhcCCCEEEEeeC----------CeEEEEECCCCcceEEEccC-----------------C
Confidence            79999999999999999999999999753211          01123443333344554322                 2


Q ss_pred             CCCceEEEEEeCCHHHHH---HHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEE
Q 013898          288 GAGVQHLALVSEDIFRTL---REMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQ  364 (434)
Q Consensus       288 G~GvqHIAf~vdDI~~av---~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llq  364 (434)
                      ..+++|+||.|+|+.+..   ++|+++    |++++..| ..        .+          ......+|-+|++|.+++
T Consensus        57 ~~~~~hiaf~v~d~~~l~~~~~~l~~~----Gi~~~~~~-~~--------~~----------~~~~~~~yf~DPdG~~iE  113 (144)
T cd07239          57 HPSLNHVAFEMPSIDEVMRGIGRMIDK----GIDILWGP-GR--------HG----------PGDNTFAYFLDPGGFVIE  113 (144)
T ss_pred             CCceEEEEEECCCHHHHHHHHHHHHHc----CCceeeCC-cc--------cC----------CCCCEEEEEECCCCcEEE
Confidence            357999999999987765   799999    99988643 21        00          001124678888998888


Q ss_pred             EEcccc
Q 013898          365 IFTKPV  370 (434)
Q Consensus       365 ifT~~~  370 (434)
                      +++...
T Consensus       114 ~~~~~~  119 (144)
T cd07239         114 YTSELE  119 (144)
T ss_pred             eccCce
Confidence            776643

2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio

>PLN02300 lactoylglutathione lyase

Probab=99.01  E-value=7.1e-09  Score=102.18  Aligned_cols=131  Identities=16%  Similarity=0.246  Sum_probs=86.9

Q ss_pred             cceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCC--CceEEEecccCCCCCCCchHHH
Q 013898          204 YGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANND--EMVLLPMNEPVFGTKRKSQIQT  281 (434)
Q Consensus       204 ~~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~--g~v~i~L~e~~~g~~~~s~i~~  281 (434)
                      ..+++|+|+++.|+|++++++||+++|||+........+.     +....++..++  ..+.+.+..... . ..     
T Consensus        20 ~~i~~l~Hv~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~-----~~~~~~l~~g~~~~~~~lel~~~~~-~-~~-----   87 (286)
T PLN02300         20 KDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEE-----KYTNAFLGYGPEDSNFVVELTYNYG-V-DK-----   87 (286)
T ss_pred             cccceEEEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCC-----cEEEEEEccCCCCCceEEEEeccCC-C-Cc-----
Confidence            3589999999999999999999999999998754321111     12122333222  234555543210 0 00     


Q ss_pred             HHhhcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCce
Q 013898          282 YLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGT  361 (434)
Q Consensus       282 fl~~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~  361 (434)
                         ...+.|++|+||.|+|+++++++|+++    |++++..| ... .     -+            ...+.|-+|++|+
T Consensus        88 ---~~~~~g~~hia~~v~dvd~~~~~l~~~----G~~i~~~~-~~~-~-----~g------------~~~~~~~~DPdG~  141 (286)
T PLN02300         88 ---YDIGTGFGHFGIAVEDVAKTVELVKAK----GGKVTREP-GPV-K-----GG------------KSVIAFVKDPDGY  141 (286)
T ss_pred             ---cccCCCccEEEEEeCCHHHHHHHHHHC----CCeeecCC-ccc-C-----CC------------ceEEEEEECCCCC
Confidence               113578999999999999999999999    99988643 221 0     00            1124566889999


Q ss_pred             EEEEEccccCC
Q 013898          362 LLQIFTKPVGD  372 (434)
Q Consensus       362 llqifT~~~~~  372 (434)
                      .+.++.++...
T Consensus       142 ~iEl~~~~~~~  152 (286)
T PLN02300        142 KFELIQRGPTP  152 (286)
T ss_pred             EEEEEeCCCCC
Confidence            99998887554

>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione

Probab=99.01  E-value=7.6e-09  Score=87.22  Aligned_cols=97  Identities=19%  Similarity=0.243  Sum_probs=67.2

Q ss_pred             EEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeC----CEEEEEEcCCCCCCCcccccCCCCCCCCC
Q 013898           33 FHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSG----DLRFVFTAPYSPSISDAADAGNSSASLPT  108 (434)
Q Consensus        33 l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G----~i~~vl~~p~~~~~~~~~~~~~~~~~~~~  108 (434)
                      ++||.+.|+|++++.+||++.|||+.......+++  ......++.+    ...+.+..+....                
T Consensus         1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~----------------   62 (121)
T cd07233           1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEG--KFTLVFLGYPDEDSEGVLELTYNWGTE----------------   62 (121)
T ss_pred             CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCCC--ceEEEEecCCCCCCccEEEEEecCCCC----------------
Confidence            58999999999999999999999998876432221  1222334432    3455554422110                


Q ss_pred             CChhHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCcc
Q 013898          109 FDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVI  155 (434)
Q Consensus       109 ~~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~  155 (434)
                            ..  ...+.++.+++|+|+|+++++++++++|+++..+|..
T Consensus        63 ------~~--~~~~~~~~~i~~~v~did~~~~~l~~~G~~~~~~~~~  101 (121)
T cd07233          63 ------EP--YDNGNGFGHLAFAVDDVYAACERLEEMGVEVTKPPGD  101 (121)
T ss_pred             ------CC--cCCCCCeEEEEEEeCCHHHHHHHHHHCCCEEeeCCcc
Confidence                  00  0233478899999999999999999999998776643

Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly

>PRK04101 fosfomycin resistance protein FosB; Provisional

Probab=98.99  E-value=4.5e-09  Score=92.12  Aligned_cols=121  Identities=13%  Similarity=0.219  Sum_probs=82.9

Q ss_pred             eeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhh
Q 013898          206 IRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEH  285 (434)
Q Consensus       206 l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~  285 (434)
                      +++|+|+++.|+|++++.+||+++|||++.....           ....+..  +...+.+..+..  ...        .
T Consensus         2 i~~i~hi~L~v~Dl~~s~~FY~~~lG~~~~~~~~-----------~~~~~~~--~g~~l~l~~~~~--~~~--------~   58 (139)
T PRK04101          2 LKGINHICFSVSNLEKSIEFYEKVLGAKLLVKGR-----------KTAYFDL--NGLWIALNEEKD--IPR--------N   58 (139)
T ss_pred             CCcEEEEEEEecCHHHHHHHHHhccCCEEEeecC-----------eeEEEec--CCeEEEeeccCC--CCC--------c
Confidence            6789999999999999999999999999764311           0111222  234555543311  000        1


Q ss_pred             cCCCCceEEEEEeC--CHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEE
Q 013898          286 NEGAGVQHLALVSE--DIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLL  363 (434)
Q Consensus       286 ~~G~GvqHIAf~vd--DI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~ll  363 (434)
                      ..+.|++|+||.++  |+++++++|+++    |++++..| ...        .           .....++-.|++|+++
T Consensus        59 ~~~~~~~hiaf~v~~~dv~~~~~~l~~~----G~~i~~~~-~~~--------~-----------~~~~~~~~~DPdGn~i  114 (139)
T PRK04101         59 EIHQSYTHIAFSIEEEDFDHWYQRLKEN----DVNILPGR-ERD--------E-----------RDKKSIYFTDPDGHKF  114 (139)
T ss_pred             cCCCCeeEEEEEecHHHHHHHHHHHHHC----CceEcCCc-ccc--------C-----------CCceEEEEECCCCCEE
Confidence            12456899999998  999999999999    99987543 210        0           1234667889999999


Q ss_pred             EEEccccCCC
Q 013898          364 QIFTKPVGDR  373 (434)
Q Consensus       364 qifT~~~~~r  373 (434)
                      ++.+--+.|+
T Consensus       115 El~~~~~~~~  124 (139)
T PRK04101        115 EFHTGTLQDR  124 (139)
T ss_pred             EEEeCCHHHH
Confidence            9987665443

>TIGR00068 glyox_I lactoylglutathione lyase

Probab=98.99  E-value=2.3e-08  Score=88.76  Aligned_cols=125  Identities=20%  Similarity=0.199  Sum_probs=81.4

Q ss_pred             CCCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCC----EEEEEEcCCCCCCCcccccCCC
Q 013898           27 RFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGD----LRFVFTAPYSPSISDAADAGNS  102 (434)
Q Consensus        27 ~~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~----i~~vl~~p~~~~~~~~~~~~~~  102 (434)
                      ....++++||.|.|+|++++.+||++.|||+++.+...+..  ......+..++    ..+.+.......          
T Consensus        12 ~~~~~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~----------   79 (150)
T TIGR00068        12 KTKKRRLLHTMLRVGDLDKSLDFYTEVLGMKLLRKRDFPEM--KFSLAFLGYGDETSAAVIELTHNWGTE----------   79 (150)
T ss_pred             ccCCceEEEEEEEecCHHHHHHHHHHhcCCEEEEEeccCCC--ceEEEEecCCCCCCccEEEEeecCCCC----------
Confidence            34678999999999999999999999999998765432221  11223333221    223332211100          


Q ss_pred             CCCCCCCChhHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccC-ceEEEEEEecCCeEEEEeec
Q 013898          103 SASLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDN-LAVIAEVQLYGDVVLRYVSY  178 (434)
Q Consensus       103 ~~~~~~~~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~-~~~~~~i~~~Gg~~~~fvd~  178 (434)
                                   .  ...+.++.|++|.|+|++++++++.++|++++.+|..... ......++.+.|..+.+++.
T Consensus        80 -------------~--~~~~~g~~hi~f~v~dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~  141 (150)
T TIGR00068        80 -------------K--YDLGNGFGHIAIGVDDVYKACERVRALGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQR  141 (150)
T ss_pred             -------------c--ccCCCceeEEEEecCCHHHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEEC
Confidence                         0  1234578899999999999999999999998776632222 22344456777777777764

Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.

>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=98.98  E-value=9e-09  Score=87.41  Aligned_cols=103  Identities=19%  Similarity=0.199  Sum_probs=66.7

Q ss_pred             EEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCChh
Q 013898           33 FHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHA  112 (434)
Q Consensus        33 l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~  112 (434)
                      +.||.|+|+|++++.+||+++|||++.....  +.    ....+..++..+.+........          . .+.   .
T Consensus         1 ~~~~~l~v~D~~~s~~FY~~~lG~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~----------~-~~~---~   60 (125)
T cd07264           1 FGYTIIYVEDVEKTLEFYERAFGFERRFLHE--SG----DYGELETGETTLAFASHDLAES----------N-LKG---G   60 (125)
T ss_pred             CceEEEEEcCHHHHHHHHHHhhCCeEEeecC--CC----cEEEecCCcEEEEEEccccccc----------c-ccc---C
Confidence            4699999999999999999999999875432  11    1223456776666654221100          0 000   0


Q ss_pred             HHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccc
Q 013898          113 ACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVIL  156 (434)
Q Consensus       113 ~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~  156 (434)
                      ........|+.+ .+++|+|+|+++++++++++|++.+.+|...
T Consensus        61 ~~~~~~~~~~~~-~~~~~~v~di~~~~~~l~~~G~~~~~~~~~~  103 (125)
T cd07264          61 FVKADPAQPPAG-FEIAFVTDDVAAAFARAVEAGAVLVSEPKEK  103 (125)
T ss_pred             ccCCccccCCCc-EEEEEEcCCHHHHHHHHHHcCCEeccCCccC
Confidence            000111234444 5899999999999999999999987776543

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.

>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=98.98  E-value=1.1e-08  Score=87.58  Aligned_cols=95  Identities=21%  Similarity=0.287  Sum_probs=69.7

Q ss_pred             eEEEEEEEeCCHHHHHHHHHHhc---CCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCC
Q 013898           32 RFHHVEFWCTDATNTARRFSWGL---GMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPT  108 (434)
Q Consensus        32 ~l~HI~~~V~da~~a~~fy~~~l---Gf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~  108 (434)
                      +|+||.+.|+|++++++||++.|   ||+++.+.+  .+    ..+....++..+.|..+....                
T Consensus         1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~--~~----~~~~~~~~~~~i~l~~~~~~~----------------   58 (128)
T cd07242           1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWE--DG----RSWRAGDGGTYLVLQQADGES----------------   58 (128)
T ss_pred             CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeec--cC----ceEEecCCceEEEEEecccCC----------------
Confidence            58999999999999999999999   999887632  11    112111577888887653321                


Q ss_pred             CChhHHhHHHHhcCCceeEEEEEecC---HHHHHHHHHHcCCCCCCCCc
Q 013898          109 FDHAACRSFAASHGLAARSIAVEVED---ADVAFNTSVAHGAKPSSPPV  154 (434)
Q Consensus       109 ~~~~~~~~~l~~hG~gv~~Iaf~V~D---vd~a~~ra~~~Ga~~~~~p~  154 (434)
                         +   .....++.++.|+||.|+|   ++++++++.++|+++...|.
T Consensus        59 ---~---~~~~~~~~g~~hia~~v~~~~d~~~~~~~l~~~g~~~~~~~~  101 (128)
T cd07242          59 ---A---GRHDRRNPGLHHLAFRAPSREAVDELYARLAKRGAEILYAPR  101 (128)
T ss_pred             ---C---cccccCCcCeeEEEEEcCCHHHHHHHHHHHHHcCCeEecCCc
Confidence               0   0123456788999999974   89999999999998776654

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.

>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive

Probab=98.98  E-value=4.7e-09  Score=89.45  Aligned_cols=113  Identities=18%  Similarity=0.237  Sum_probs=78.3

Q ss_pred             eeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcC
Q 013898          208 RLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNE  287 (434)
Q Consensus       208 ~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~  287 (434)
                      +|+|+.+.|+|++++.+||+++|||+......    .       ...+..+.  ..+.+.....   .          ..
T Consensus         1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~~~~----~-------~~~~~~~~--~~~~l~~~~~---~----------~~   54 (121)
T cd07244           1 GINHITLAVSDLERSVAFYVDLLGFKLHVRWD----K-------GAYLEAGD--LWLCLSVDAN---V----------GP   54 (121)
T ss_pred             CcceEEEEECCHHHHHHHHHHhcCCEEEEecC----C-------ceEEecCC--EEEEEecCCC---C----------CC
Confidence            58999999999999999999999999764321    0       01222222  3333322110   0          12


Q ss_pred             CCCceEEEEEe--CCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEEE
Q 013898          288 GAGVQHLALVS--EDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQI  365 (434)
Q Consensus       288 G~GvqHIAf~v--dDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llqi  365 (434)
                      ..+++||||.+  +|+++++++|+++    |+++...+ ..+                      ...+|-+|++|+.+++
T Consensus        55 ~~~~~hi~f~v~~~dl~~~~~~l~~~----G~~~~~~~-~~~----------------------~~~~~f~DPdG~~ie~  107 (121)
T cd07244          55 AKDYTHYAFSVSEEDFASLKEKLRQA----GVKEWKEN-TSE----------------------GDSFYFLDPDGHKLEL  107 (121)
T ss_pred             CCCeeeEEEEeCHHHHHHHHHHHHHc----CCcccCCC-CCC----------------------ccEEEEECCCCCEEEE
Confidence            45689999998  5899999999999    99876532 210                      1256889999999999


Q ss_pred             EccccCCC
Q 013898          366 FTKPVGDR  373 (434)
Q Consensus       366 fT~~~~~r  373 (434)
                      |+.++-.|
T Consensus       108 ~~~~~~~~  115 (121)
T cd07244         108 HVGSLASR  115 (121)
T ss_pred             EeCCHHHH
Confidence            98877543

This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.

>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=98.98  E-value=7.8e-09  Score=87.42  Aligned_cols=99  Identities=16%  Similarity=0.144  Sum_probs=66.0

Q ss_pred             eEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEe-CCEEEEEEcCCCCCCCcccccCCCCCCCCCCC
Q 013898           32 RFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRS-GDLRFVFTAPYSPSISDAADAGNSSASLPTFD  110 (434)
Q Consensus        32 ~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~-G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~  110 (434)
                      +++||.|+|+|++++++||++.|||+...+...+..  .....++.. ++..+.|.......    +             
T Consensus         1 ~~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~----~-------------   61 (125)
T cd07241           1 KIEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRK--GFESYFLSFDDGARLELMTRPDIA----P-------------   61 (125)
T ss_pred             CceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCC--CceEEEEecCCCcEEEEEcCcccC----C-------------
Confidence            479999999999999999999999997644321111  122333433 45667766421110    0             


Q ss_pred             hhHHhHHHHhcCCceeEEEEEec---CHHHHHHHHHHcCCCCCCCCc
Q 013898          111 HAACRSFAASHGLAARSIAVEVE---DADVAFNTSVAHGAKPSSPPV  154 (434)
Q Consensus       111 ~~~~~~~l~~hG~gv~~Iaf~V~---Dvd~a~~ra~~~Ga~~~~~p~  154 (434)
                       ..    ......|..||||.|+   |+++++++++++|+++...|.
T Consensus        62 -~~----~~~~~~g~~hi~f~v~~~~~v~~~~~~l~~~g~~~~~~~~  103 (125)
T cd07241          62 -SP----NEGERTGWAHLAFSVGSKEAVDELTERLRADGYLIIGEPR  103 (125)
T ss_pred             -Cc----ccCCCCceEEEEEECCCHHHHHHHHHHHHHCCCEEEeCce
Confidence             00    1123357889999996   489999999999998776564

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.

>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp

Probab=98.97  E-value=8e-09  Score=87.81  Aligned_cols=111  Identities=19%  Similarity=0.221  Sum_probs=75.7

Q ss_pred             ceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCC--CceEEEecccCCCCCCCchHHHH
Q 013898          205 GIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANND--EMVLLPMNEPVFGTKRKSQIQTY  282 (434)
Q Consensus       205 ~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~--g~v~i~L~e~~~g~~~~s~i~~f  282 (434)
                      .+.+|+|+++.|+|++++.+||+++|||++....+    .       ...+....  ....+.+..+             
T Consensus         3 ~i~~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~~~----~-------~~~l~~~~~~~~~~~~l~~~-------------   58 (121)
T cd09013           3 DIAHLAHVELLTPKPEESLWFFTDVLGLEETGREG----Q-------SVYLRAWGDYEHHSLKLTES-------------   58 (121)
T ss_pred             CccEeeEEEEEeCCHHHHHHHHHhCcCCEEEeecC----C-------eEEEEeccCCCccEEEEeeC-------------
Confidence            57899999999999999999999999999875421    0       12222211  2233333221             


Q ss_pred             HhhcCCCCceEEEEEeC---CHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCC
Q 013898          283 LEHNEGAGVQHLALVSE---DIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQ  359 (434)
Q Consensus       283 l~~~~G~GvqHIAf~vd---DI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~  359 (434)
                          ...|++|+||.++   |+++..++|+++    |+++...+ ..        .+           .. .-+|-+|++
T Consensus        59 ----~~~~~~h~af~v~~~~~v~~~~~~l~~~----G~~~~~~~-~~--------~~-----------~~-~~~~~~DPd  109 (121)
T cd09013          59 ----PEAGLGHIAWRASSPEALERRVAALEAS----GLGIGWIE-GD--------PG-----------HG-KAYRFRSPD  109 (121)
T ss_pred             ----CCCceEEEEEEcCCHHHHHHHHHHHHHc----CCcccccc-CC--------CC-----------Cc-ceEEEECCC
Confidence                2367999999997   588888999999    98864322 11        01           01 134778999


Q ss_pred             ceEEEEEcc
Q 013898          360 GTLLQIFTK  368 (434)
Q Consensus       360 g~llqifT~  368 (434)
                      |..+.+|..
T Consensus       110 G~~iEl~~~  118 (121)
T cd09013         110 GHPMELYWE  118 (121)
T ss_pred             CCEEEEEEe
Confidence            999999864

JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C

>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=98.95  E-value=3.4e-08  Score=83.26  Aligned_cols=115  Identities=21%  Similarity=0.151  Sum_probs=76.3

Q ss_pred             EEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCChhHHh
Q 013898           36 VEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHAACR  115 (434)
Q Consensus        36 I~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (434)
                      +.|+|+|++++.+||++.|||+.......+.+.  .....+..|+..+.+..+....                   .   
T Consensus         5 ~~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~--~~~~~l~~~~~~~~l~~~~~~~-------------------~---   60 (122)
T cd07246           5 PYLIVRDAAAAIDFYKKAFGAEELERMPDDDGR--VMHAELRIGDSVLMLADEFPEH-------------------G---   60 (122)
T ss_pred             EEEEECCHHHHHHHHHHhhCCEEEEEEeCCCCC--EEEEEEEECCEEEEEecCCccc-------------------C---
Confidence            458999999999999999999988765433332  2233456677777776532110                   0   


Q ss_pred             HHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEE
Q 013898          116 SFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRY  175 (434)
Q Consensus       116 ~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~f  175 (434)
                       ....++.+..+++|.|+|++++++++.+.|++++.+|.....+.....++++.|..+.|
T Consensus        61 -~~~~~~~~~~~~~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~G~~~~l  119 (122)
T cd07246          61 -SPASWGGTPVSLHLYVEDVDATFARAVAAGATSVMPPADQFWGDRYGGVRDPFGHRWWI  119 (122)
T ss_pred             -CCCCCCCceEEEEEEeCCHHHHHHHHHHCCCeEecCcccccccceEEEEECCCCCEEEE
Confidence             11234556779999999999999999999999887775432323333344444433333

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.

>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins

Probab=98.94  E-value=7.8e-09  Score=88.32  Aligned_cols=118  Identities=22%  Similarity=0.331  Sum_probs=78.8

Q ss_pred             eeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhc
Q 013898          207 RRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHN  286 (434)
Q Consensus       207 ~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~  286 (434)
                      .+++|+++.|+|++++++||+++|||+......          .. ..+... +...+.+..+.                
T Consensus         3 ~~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~----------~~-~~~~~~-~~~~l~~~~~~----------------   54 (123)
T cd08351           3 VTLNHTIVPARDREASAEFYAEILGLPWAKPFG----------PF-AVVKLD-NGVSLDFAQPD----------------   54 (123)
T ss_pred             ceEeEEEEEcCCHHHHHHHHHHhcCCEeeeccC----------CE-EEEEcC-CCcEEEEecCC----------------
Confidence            468999999999999999999999999865321          11 112222 23455554431                


Q ss_pred             CCCCceEEEEEeC--CHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEE
Q 013898          287 EGAGVQHLALVSE--DIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQ  364 (434)
Q Consensus       287 ~G~GvqHIAf~vd--DI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llq  364 (434)
                      ...+..|+||.++  |+++..++|+++    |+++...| ..      ...+      ....-.....++-+|++|+.++
T Consensus        55 ~~~~~~h~a~~v~~~dl~~~~~~l~~~----G~~~~~~~-~~------~~~~------~~~~~~g~~~~~f~DPdG~~iE  117 (123)
T cd08351          55 GEIPPQHYAFLVSEEEFDRIFARIRER----GIDYWADP-QR------TEPG------QINTNDGGRGVYFLDPDGHLLE  117 (123)
T ss_pred             CCCCcceEEEEeCHHHHHHHHHHHHHc----CCceecCC-cc------cccc------cccCCCCeeEEEEECCCCCEEE
Confidence            1234789999997  699999999999    99998653 21      0000      0000012246678899999999


Q ss_pred             EEccc
Q 013898          365 IFTKP  369 (434)
Q Consensus       365 ifT~~  369 (434)
                      +.+.|
T Consensus       118 l~~~~  122 (123)
T cd08351         118 IITRP  122 (123)
T ss_pred             EEecc
Confidence            99887

ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.

>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=98.94  E-value=1.2e-08  Score=86.82  Aligned_cols=116  Identities=18%  Similarity=0.287  Sum_probs=79.6

Q ss_pred             eeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhc
Q 013898          207 RRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHN  286 (434)
Q Consensus       207 ~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~  286 (434)
                      ++|+||++.|+|++++++||+++|||+......           ...++..++....|.+.....   ..      ....
T Consensus         1 ~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~-----------~~~~l~~~~~~~~l~l~~~~~---~~------~~~~   60 (125)
T cd07255           1 TRIGAVTLRVADLERSLAFYQDVLGLEVLERTD-----------STAVLGTGGKRPLLVLEEDPD---AP------PAPP   60 (125)
T ss_pred             CEEEEEEEEECCHHHHHHHHHhccCcEEEEcCC-----------CEEEEecCCCeEEEEEEeCCC---CC------cccC
Confidence            479999999999999999999999999875421           012333333346666655421   10      1112


Q ss_pred             CCCCceEEEEEeC---CHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEE
Q 013898          287 EGAGVQHLALVSE---DIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLL  363 (434)
Q Consensus       287 ~G~GvqHIAf~vd---DI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~ll  363 (434)
                      ...|++||||.|+   |+++.+++|+++    |+++.. |...         +       +     ..-+|-.|++|.++
T Consensus        61 ~~~~~~hi~f~v~~~~~v~~~~~~l~~~----g~~~~~-~~~~---------~-------~-----~~~~~~~DPdG~~i  114 (125)
T cd07255          61 GATGLYHFAILLPSRADLAAALRRLIEL----GIPLVG-ASDH---------L-------V-----SEALYLSDPEGNGI  114 (125)
T ss_pred             CCCcEEEEEEECCCHHHHHHHHHHHHHc----CCceec-cccc---------c-------c-----eeEEEEECCCCCEE
Confidence            3567999999997   488999999999    987754 2111         0       0     02357889999999


Q ss_pred             EEEcc
Q 013898          364 QIFTK  368 (434)
Q Consensus       364 qifT~  368 (434)
                      ++++.
T Consensus       115 Ei~~~  119 (125)
T cd07255         115 EIYAD  119 (125)
T ss_pred             EEEEe
Confidence            99864

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.

>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=98.94  E-value=1.3e-08  Score=85.77  Aligned_cols=97  Identities=23%  Similarity=0.241  Sum_probs=70.0

Q ss_pred             cceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCC
Q 013898           30 VNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTF  109 (434)
Q Consensus        30 i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~  109 (434)
                      +.+++||.+.|+|++++++||++.|||+.....+.      .....++.|+..+.+.......   .+            
T Consensus         1 ~~~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~---~~------------   59 (125)
T cd07253           1 IKRIDHVVLTVADIEATLDFYTRVLGMEVVRFGEE------VGRKALRFGSQKINLHPVGGEF---EP------------   59 (125)
T ss_pred             CcccceEEEEecCHHHHHHHHHHHhCceeeccccc------CCceEEEeCCEEEEEecCCCcc---Cc------------
Confidence            46899999999999999999999999998865431      1233455667777765532110   00            


Q ss_pred             ChhHHhHHHHhcCCceeEEEEEecC-HHHHHHHHHHcCCCCCCCCc
Q 013898          110 DHAACRSFAASHGLAARSIAVEVED-ADVAFNTSVAHGAKPSSPPV  154 (434)
Q Consensus       110 ~~~~~~~~l~~hG~gv~~Iaf~V~D-vd~a~~ra~~~Ga~~~~~p~  154 (434)
                             .....+.|..|++|.|++ +++++++++++|++++..|.
T Consensus        60 -------~~~~~~~~~~hi~~~~~~~~~~~~~~l~~~G~~~~~~~~   98 (125)
T cd07253          60 -------AAGSPGPGSDDLCLITEPPIDELVAHLEAHGVPIEEGPV   98 (125)
T ss_pred             -------CccCCCCCCceEEEEecccHHHHHHHHHHCCceeecCcc
Confidence                   011234578899999975 99999999999998776664

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.

>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=98.94  E-value=8.7e-09  Score=84.87  Aligned_cols=114  Identities=19%  Similarity=0.236  Sum_probs=76.1

Q ss_pred             eeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcCC
Q 013898          209 LDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEG  288 (434)
Q Consensus       209 iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G  288 (434)
                      |+|+++.|+|++++++||+++|||+......  ..      ....++..+++ ..+.|.....   ....      ...+
T Consensus         1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~--~~------~~~~~~~~~~~-~~i~l~~~~~---~~~~------~~~~   62 (114)
T cd07245           1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPP--FL------FPGAWLYAGDG-PQLHLIEEDP---PDAL------PEGP   62 (114)
T ss_pred             CCeEEEecCCHHHHHHHHHHccCCcccCcCC--CC------CCceEEEeCCC-cEEEEEecCC---Cccc------cCCC
Confidence            6899999999999999999999998764321  11      01123333333 3455544321   1110      1235


Q ss_pred             CCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEEE
Q 013898          289 AGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQI  365 (434)
Q Consensus       289 ~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llqi  365 (434)
                      .+..|++|.|+|+.+++++|+++    |++++..+ ..        .            .....++-.|++|.++++
T Consensus        63 ~~~~~~~~~v~d~~~~~~~l~~~----g~~~~~~~-~~--------~------------~~~~~~~~~DP~G~~iE~  114 (114)
T cd07245          63 GRDDHIAFRVDDLDAFRARLKAA----GVPYTESD-VP--------G------------DGVRQLFVRDPDGNRIEL  114 (114)
T ss_pred             cccceEEEEeCCHHHHHHHHHHc----CCCccccc-CC--------C------------CCccEEEEECCCCCEEeC
Confidence            67999999999999999999999    99988643 22        0            122345678888988764

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.

>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=98.92  E-value=2.4e-08  Score=83.23  Aligned_cols=116  Identities=24%  Similarity=0.282  Sum_probs=78.7

Q ss_pred             eeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCC-ceEEEecccCCCCCCCchHHHHHhhcCCC
Q 013898          211 HAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDE-MVLLPMNEPVFGTKRKSQIQTYLEHNEGA  289 (434)
Q Consensus       211 Hv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g-~v~i~L~e~~~g~~~~s~i~~fl~~~~G~  289 (434)
                      ||++.|.|++++++||+++|||+..++....      .+.....+..+++ .+.+.+..+..   ..+.     ....+.
T Consensus         1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~-----~~~~~~   66 (119)
T cd07263           1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMG------GGFRWVTVAPPGSPETSLVLAPPAN---PAAM-----SGLQPG   66 (119)
T ss_pred             CceEEeCCHHHHHHHHHhccCeEEEEeeccC------CCcEEEEEeCCCCCeeEEEEeCCCC---cccc-----ccccCC
Confidence            8999999999999999999999988764311      1233333444444 56777755431   1111     112356


Q ss_pred             CceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEEE
Q 013898          290 GVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQI  365 (434)
Q Consensus       290 GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llqi  365 (434)
                      |..|++|.|+||++++++|+++    |++++.. |..+        .            ....++-+|++|+.+.+
T Consensus        67 ~~~~~~~~v~di~~~~~~l~~~----g~~~~~~-~~~~--------~------------~~~~~~~~DP~G~~ie~  117 (119)
T cd07263          67 GTPGLVLATDDIDATYEELKAR----GVEFSEE-PREM--------P------------YGTVAVFRDPDGNLFVL  117 (119)
T ss_pred             CceEEEEEehHHHHHHHHHHhC----CCEEeec-cccC--------C------------CceEEEEECCCCCEEEE
Confidence            7889999999999999999999    9999864 3211        0            11355677888887765

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.

>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]

Probab=98.92  E-value=9.3e-09  Score=90.17  Aligned_cols=127  Identities=20%  Similarity=0.260  Sum_probs=92.0

Q ss_pred             eeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchH-HHHHh
Q 013898          206 IRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQI-QTYLE  284 (434)
Q Consensus       206 l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i-~~fl~  284 (434)
                      +.++.|+.+.+++.-+.+.||...||++......    . ...+. +.++.+.++.+.+..+..+     .|.+ +.|+.
T Consensus        40 ytr~~gm~l~~~~~fke~~Fsl~fL~~~~~~~vP----~-~~~~~-~v~~~~~~~~~ELthn~Gt-----es~~~~~~~n  108 (170)
T KOG2944|consen   40 YTRVNGMALLVPDDFKEAKFSLYFLGAEVSEDVP----K-PEHGV-SVFVFSRNAKLELTHNWGT-----ESPPDQAYLN  108 (170)
T ss_pred             hhhhccceeechhhhhHhhhHHHhhcccccccCc----c-CCCCC-ceEEecccCceeeecCCCC-----CCCcchhhcC
Confidence            5678899999999999999999999998664332    1 11222 2556666666666555543     3444 67888


Q ss_pred             hcCCC-CceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEE
Q 013898          285 HNEGA-GVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLL  363 (434)
Q Consensus       285 ~~~G~-GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~ll  363 (434)
                      .+..+ |.+||||.|+||.+++.+|++.    ||+|-..|++.                     +--+|..--|++||-+
T Consensus       109 gN~~prGfgHIci~V~di~sac~~lkek----GV~f~Kk~~dG---------------------k~K~iaF~~dpDgywi  163 (170)
T KOG2944|consen  109 GNKEPRGFGHICIEVDDINSACERLKEK----GVRFKKKLKDG---------------------KMKPIAFLHDPDGYWI  163 (170)
T ss_pred             CCCCCCccceEEEEeCCHHHHHHHHHHh----CceeeecCCCc---------------------cccceeEEECCCCCeE
Confidence            77666 9999999999999999999999    99988766332                     1124556667788888


Q ss_pred             EEEcc
Q 013898          364 QIFTK  368 (434)
Q Consensus       364 qifT~  368 (434)
                      .|+++
T Consensus       164 ei~~~  168 (170)
T KOG2944|consen  164 EIELE  168 (170)
T ss_pred             EEeec
Confidence            88875

>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1

Probab=98.91  E-value=3.8e-08  Score=85.36  Aligned_cols=91  Identities=16%  Similarity=0.114  Sum_probs=64.2

Q ss_pred             cceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCC
Q 013898           30 VNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTF  109 (434)
Q Consensus        30 i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~  109 (434)
                      +.+++||.+.|+|++++++||++.|||.++.+.+... ........+..|+..+.+.....+                  
T Consensus         2 i~~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~~~~~~-~~~~~~~~~~~~~~~i~l~~~~~~------------------   62 (131)
T cd08364           2 IEGLSHITLIVKDLNKTTAFLQNIFNAREVYSSGDKT-FSLSKEKFFLIGGLWIAIMEGDSL------------------   62 (131)
T ss_pred             cccEeEEEEEeCCHHHHHHHHHHHhCCeeEEeccccc-ccccceeEEEcCCeEEEEecCCCC------------------
Confidence            6789999999999999999999999998876543110 000111233356666666532110                  


Q ss_pred             ChhHHhHHHHhcCCceeEEEEEec--CHHHHHHHHHHcCCCCC
Q 013898          110 DHAACRSFAASHGLAARSIAVEVE--DADVAFNTSVAHGAKPS  150 (434)
Q Consensus       110 ~~~~~~~~l~~hG~gv~~Iaf~V~--Dvd~a~~ra~~~Ga~~~  150 (434)
                                 ...++.||||.|+  |++++++++.++|+++.
T Consensus        63 -----------~~~~~~Hiaf~v~~~~ld~~~~~l~~~gv~~~   94 (131)
T cd08364          63 -----------QERTYNHIAFKISDSDVDEYTERIKALGVEMK   94 (131)
T ss_pred             -----------CCCCceEEEEEcCHHHHHHHHHHHHHCCCEEe
Confidence                       1125789999998  79999999999998753

This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.

>PRK10291 glyoxalase I; Provisional

Probab=98.91  E-value=1.6e-08  Score=87.04  Aligned_cols=91  Identities=12%  Similarity=0.156  Sum_probs=59.7

Q ss_pred             eEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCC--CceEEEecccCCCCCCCchHHHHHhhcCCCC
Q 013898          213 VGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANND--EMVLLPMNEPVFGTKRKSQIQTYLEHNEGAG  290 (434)
Q Consensus       213 ~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~--g~v~i~L~e~~~g~~~~s~i~~fl~~~~G~G  290 (434)
                      ++.|.|+++++.||+++|||+.......++     .+++..++..++  ....+++.....  ...        ...|.+
T Consensus         1 ~l~V~Dle~s~~FY~~~LG~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~--------~~~g~~   65 (129)
T PRK10291          1 MLRVGDLQRSIDFYTNVLGMKLLRTSENPE-----YKYSLAFVGYGPETEEAVIELTYNWG--VDK--------YELGTA   65 (129)
T ss_pred             CEEecCHHHHHHHHHhccCCEEEEeecCCC-----CcEEEEEEccCCCCCcceEEeeecCC--CCC--------CcCCCC
Confidence            468999999999999999999876543111     123333333222  122344432210  011        114568


Q ss_pred             ceEEEEEeCCHHHHHHHHHHhcCCCCceeccC
Q 013898          291 VQHLALVSEDIFRTLREMRKRSGVGGFEFMPS  322 (434)
Q Consensus       291 vqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~  322 (434)
                      ++|+||.|+|+++++++|+++    |++++..
T Consensus        66 ~~hlaf~V~d~~~~~~~l~~~----G~~~~~~   93 (129)
T PRK10291         66 YGHIALSVDNAAEACEKIRQN----GGNVTRE   93 (129)
T ss_pred             eeEEEEEeCCHHHHHHHHHHc----CCccccC
Confidence            999999999999999999999    9998853

>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=98.91  E-value=2.1e-08  Score=84.49  Aligned_cols=123  Identities=20%  Similarity=0.286  Sum_probs=79.8

Q ss_pred             eeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhh
Q 013898          206 IRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEH  285 (434)
Q Consensus       206 l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~  285 (434)
                      +++++|+++.|+|++++++||+++|||+.....+  +.     +.  ..+..++  ..+.+.....   ....    ...
T Consensus         1 ~~~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~~--~~-----~~--~~~~~~~--~~~~l~~~~~---~~~~----~~~   62 (125)
T cd07253           1 IKRIDHVVLTVADIEATLDFYTRVLGMEVVRFGE--EV-----GR--KALRFGS--QKINLHPVGG---EFEP----AAG   62 (125)
T ss_pred             CcccceEEEEecCHHHHHHHHHHHhCceeecccc--cC-----Cc--eEEEeCC--EEEEEecCCC---ccCc----Ccc
Confidence            4689999999999999999999999999875432  10     11  2233322  4556554321   1100    011


Q ss_pred             cCCCCceEEEEEeCC-HHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEE
Q 013898          286 NEGAGVQHLALVSED-IFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQ  364 (434)
Q Consensus       286 ~~G~GvqHIAf~vdD-I~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llq  364 (434)
                      ..+.|++|+||.+++ ++++.++|+++    |++++..| ..-..   .+ +            ....++-+|++|+++.
T Consensus        63 ~~~~~~~hi~~~~~~~~~~~~~~l~~~----G~~~~~~~-~~~~~---~~-~------------~~~~~~~~DPdG~~ve  121 (125)
T cd07253          63 SPGPGSDDLCLITEPPIDELVAHLEAH----GVPIEEGP-VPRTG---AR-G------------PITSVYFRDPDGNLIE  121 (125)
T ss_pred             CCCCCCceEEEEecccHHHHHHHHHHC----CceeecCc-ccccC---CC-C------------CccEEEEECCCCCEEE
Confidence            245789999999975 99999999999    99988654 21000   00 0            0123577888998888


Q ss_pred             EEc
Q 013898          365 IFT  367 (434)
Q Consensus       365 ifT  367 (434)
                      +.+
T Consensus       122 ~~~  124 (125)
T cd07253         122 LSN  124 (125)
T ss_pred             eee
Confidence            764

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.

>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins

Probab=98.90  E-value=2.4e-08  Score=84.38  Aligned_cols=120  Identities=13%  Similarity=0.100  Sum_probs=76.9

Q ss_pred             eeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcC--CCceEEEecccCCCCCCCchHHHHHhh
Q 013898          208 RLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANN--DEMVLLPMNEPVFGTKRKSQIQTYLEH  285 (434)
Q Consensus       208 ~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~--~g~v~i~L~e~~~g~~~~s~i~~fl~~  285 (434)
                      +|+||++.|+|++++++||+++|||+.......  ...  .+.....+...  .+...+.|.+....  ...      ..
T Consensus         1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~l~l~~~~~~--~~~------~~   68 (126)
T cd08346           1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVN--QDD--PGTYHLFFGDGLGSPGTLLTFFEWPDA--GPK------GR   68 (126)
T ss_pred             CcccEEEEcCChhHhHHHHHHccCCEEeeeEec--cCC--CceEEEEEecCCCCCCCEEEEEecCCC--CCC------CC
Confidence            479999999999999999999999998765431  111  01112223222  23345666544210  110      12


Q ss_pred             cCCCCceEEEEEeC---CHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceE
Q 013898          286 NEGAGVQHLALVSE---DIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTL  362 (434)
Q Consensus       286 ~~G~GvqHIAf~vd---DI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~l  362 (434)
                      ....|+.|+||.|+   |+.++.++++++    |+++.. ++..        .             ....+|-+|++|++
T Consensus        69 ~~~~~~~hi~f~v~~~~~~~~~~~~~~~~----g~~~~~-~~~~--------~-------------~~~~~~~~DP~G~~  122 (126)
T cd08346          69 RGPGQIHHIAFSVPSEASLDAWRERLRAA----GVPVSG-VVDH--------F-------------GERSIYFEDPDGLR  122 (126)
T ss_pred             CCCCcEEEEEEEcCCHHHHHHHHHHHHHc----CCcccc-eEee--------c-------------ceEEEEEECCCCCE
Confidence            23456899999998   578999999999    998875 3221        0             12345678889988


Q ss_pred             EEE
Q 013898          363 LQI  365 (434)
Q Consensus       363 lqi  365 (434)
                      +++
T Consensus       123 iE~  125 (126)
T cd08346         123 LEL  125 (126)
T ss_pred             EEe
Confidence            875

The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.

>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase

Probab=98.89  E-value=3.4e-08  Score=83.14  Aligned_cols=111  Identities=12%  Similarity=0.052  Sum_probs=74.6

Q ss_pred             eeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhh
Q 013898          206 IRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEH  285 (434)
Q Consensus       206 l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~  285 (434)
                      +++|+|+++.|+|+++|.+||++ |||+......    .       ..++...+....+.+....               
T Consensus         1 ~~~l~hv~l~v~Dl~~s~~FY~~-lGl~~~~~~~----~-------~~~~~~~~~~~~~~~~~~~---------------   53 (113)
T cd07267           1 LTDIAHVRFEHPDLDKAERFLTD-FGLEVAARTD----D-------ELYYRGYGTDPFVYVARKG---------------   53 (113)
T ss_pred             CcEEEEEEEccCCHHHHHHHHHH-cCCEEEEecC----C-------eEEEecCCCccEEEEcccC---------------
Confidence            46899999999999999999999 9998765421    1       1223332222222222210               


Q ss_pred             cCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEEE
Q 013898          286 NEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQI  365 (434)
Q Consensus       286 ~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llqi  365 (434)
                       ...++.|+||.|+|+++..+.+++.    |+.++..+ .         .+           .....++-.|++|..+++
T Consensus        54 -~~~~~~~~af~v~~~~~~~~~~~~~----g~~~~~~~-~---------~~-----------~~~~~~~~~DPdG~~iEl  107 (113)
T cd07267          54 -EKARFVGAAFEAASRADLEKAAALP----GASVIDDL-E---------AP-----------GGGKRVTLTDPDGFPVEL  107 (113)
T ss_pred             -CcCcccEEEEEECCHHHHHHHHHcC----CCeeecCC-C---------CC-----------CCceEEEEECCCCCEEEE
Confidence             1357999999999998888888877    88877532 1         00           011256789999999999


Q ss_pred             Eccc
Q 013898          366 FTKP  369 (434)
Q Consensus       366 fT~~  369 (434)
                      +..+
T Consensus       108 ~~~~  111 (113)
T cd07267         108 VYGQ  111 (113)
T ss_pred             Eecc
Confidence            8753

This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.

>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin

Probab=98.89  E-value=6.7e-09  Score=90.19  Aligned_cols=117  Identities=15%  Similarity=0.169  Sum_probs=78.9

Q ss_pred             eeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcCC
Q 013898          209 LDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEG  288 (434)
Q Consensus       209 iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G  288 (434)
                      |+||++.|+|++++.+||+++|||+.....    ..     .  ..+..  +...+.+.....  ...        ....
T Consensus         1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~~~----~~-----~--~~~~~--~~~~l~l~~~~~--~~~--------~~~~   57 (131)
T cd08363           1 INHMTFSVSNLDKSISFYKHVFMEKLLVLG----EK-----T--AYFTI--GGTWLALNEEPD--IPR--------NEIR   57 (131)
T ss_pred             CceEEEEECCHHHHHHHHHHhhCCEEeccC----Cc-----c--ceEee--CceEEEEEccCC--CCc--------CCcC
Confidence            689999999999999999999999875321    10     1  11222  235566644321  011        1123


Q ss_pred             CCceEEEEEeCC--HHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEEEE
Q 013898          289 AGVQHLALVSED--IFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIF  366 (434)
Q Consensus       289 ~GvqHIAf~vdD--I~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llqif  366 (434)
                      .|++||||.+++  +++++++|++.    |+++...| ..+..                   ...-+|-+|++|+.++++
T Consensus        58 ~~~~hiaf~v~~~dld~~~~~l~~~----G~~~~~~~-~~~~~-------------------~~~~~~f~DPdG~~iEl~  113 (131)
T cd08363          58 QSYTHIAFTIEDSEFDAFYTRLKEA----GVNILPGR-KRDVR-------------------DRKSIYFTDPDGHKLEVH  113 (131)
T ss_pred             ccceEEEEEecHHHHHHHHHHHHHc----CCcccCCC-ccccC-------------------cceEEEEECCCCCEEEEe
Confidence            579999999984  99999999999    99987543 22110                   112457889999999999


Q ss_pred             ccccCC
Q 013898          367 TKPVGD  372 (434)
Q Consensus       367 T~~~~~  372 (434)
                      +...-.
T Consensus       114 ~~~~~~  119 (131)
T cd08363         114 TGTLAE  119 (131)
T ss_pred             cCcHHH
Confidence            876544

This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases

>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=98.88  E-value=3.9e-08  Score=81.95  Aligned_cols=93  Identities=15%  Similarity=0.263  Sum_probs=66.1

Q ss_pred             EEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEe--C-CEEEEEEcCCCCCCCcccccCCCCCCCCCCCh
Q 013898           35 HVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRS--G-DLRFVFTAPYSPSISDAADAGNSSASLPTFDH  111 (434)
Q Consensus        35 HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~--G-~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~  111 (434)
                      ||.+.|+|++++++||++.|||++..+.....   ......+..  + ++.|.+..+..+.                   
T Consensus         1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~-------------------   58 (119)
T cd07263           1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMGG---GFRWVTVAPPGSPETSLVLAPPANPA-------------------   58 (119)
T ss_pred             CceEEeCCHHHHHHHHHhccCeEEEEeeccCC---CcEEEEEeCCCCCeeEEEEeCCCCcc-------------------
Confidence            89999999999999999999999987643111   122333333  2 4667665432211                   


Q ss_pred             hHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCC
Q 013898          112 AACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPP  153 (434)
Q Consensus       112 ~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p  153 (434)
                      +.    ...++.+..+++|.|+|+++++++++++|+++..+|
T Consensus        59 ~~----~~~~~~~~~~~~~~v~di~~~~~~l~~~g~~~~~~~   96 (119)
T cd07263          59 AM----SGLQPGGTPGLVLATDDIDATYEELKARGVEFSEEP   96 (119)
T ss_pred             cc----ccccCCCceEEEEEehHHHHHHHHHHhCCCEEeecc
Confidence            00    112445778999999999999999999999887766

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.

>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]

Probab=98.88  E-value=3.9e-08  Score=91.56  Aligned_cols=214  Identities=16%  Similarity=0.198  Sum_probs=129.8

Q ss_pred             cceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCce-----------eEEEEEEEeCCEEEEEEcCCCCCCCcccc
Q 013898           30 VNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNT-----------VHASYLLRSGDLRFVFTAPYSPSISDAAD   98 (434)
Q Consensus        30 i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~-----------~~~~~~l~~G~i~~vl~~p~~~~~~~~~~   98 (434)
                      ..+.-|+.|.|.|..++++||+++|||++...++.++|+.           .....-+...+.+|++--.++-       
T Consensus        15 ~~r~LH~VfkVgdr~kti~Fyt~vlgMkvLRheef~egc~aacngpyd~kwSktmvGyGpEdshFViELTYNY-------   87 (299)
T KOG2943|consen   15 TRRALHYVFKVGDRAKTIDFYTEVLGMKVLRHEEFEEGCEAACNGPYDGKWSKTMVGYGPEDSHFVIELTYNY-------   87 (299)
T ss_pred             chheeeEeEeecchHHHHHHHHHhhcceeeehhhhhhhhhhhcCCCcccchhhhheecCCCcccEEEEEEecc-------
Confidence            3568899999999999999999999999987776666421           1222333445566665433321       


Q ss_pred             cCCCCCCCCCCChhHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEeec
Q 013898           99 AGNSSASLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSY  178 (434)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd~  178 (434)
                            +|..|+          -|.+..+|++.++|+-...+.....|.+        ...-.++.+..++|..++++++
T Consensus        88 ------gV~~Ye----------lGndfg~i~I~s~dv~~~ve~v~~p~~~--------~~g~~~~~v~dPdGykF~l~~~  143 (299)
T KOG2943|consen   88 ------GVSKYE----------LGNDFGGITIASDDVFSKVEKVNAPGGK--------GSGCGIAFVKDPDGYKFYLIDR  143 (299)
T ss_pred             ------Ccccee----------ccCCcccEEEeHHHHHHHHHHhcCcCCc--------ccceEEEEEECCCCcEEEEecc
Confidence                  122221          3556678888888876665554444332        1222355566677777777653


Q ss_pred             cCcCCCCCCCCCCccCCCCCCCCcccceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcC
Q 013898          179 KDKANHLDFLPGFEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANN  258 (434)
Q Consensus       179 ~~~~~~g~~~p~f~~~~~~~~~~~~~~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~  258 (434)
                        +                  +..+ .   +-.|.++|.|+++++.||++.||++....-.  .       -.+..|.-.
T Consensus       144 --~------------------p~s~-p---v~~V~l~VgdL~ks~kyw~~~lgM~ilekee--k-------~t~~~mgYg  190 (299)
T KOG2943|consen  144 --G------------------PQSD-P---VLQVMLNVGDLQKSIKYWEKLLGMKILEKEE--K-------YTRARMGYG  190 (299)
T ss_pred             --C------------------CCCC-C---eEEEEEEehhHHHHHHHHHHHhCcchhhhhh--h-------hhhhhhccC
Confidence              1                  0011 1   3368899999999999999999999875311  0       011223334


Q ss_pred             CCceEEEecccCCCCCCCchHHHHHhhcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceecc
Q 013898          259 DEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMP  321 (434)
Q Consensus       259 ~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~  321 (434)
                      ++.+.++|...-.    .      +++..|-|--.+|.-++|+....+.++..    +-.++.
T Consensus       191 d~q~~LElt~~~~----~------id~~kg~griafaip~d~~~~l~e~iK~~----n~~i~~  239 (299)
T KOG2943|consen  191 DEQCVLELTYNYD----V------IDRAKGFGRIAFAIPTDDLPKLQEAIKSA----NGTILT  239 (299)
T ss_pred             CcceEEEEEeccC----c------ccccccceeEEEeccccccccHHHHHHHh----cccccc
Confidence            5567777755321    1      22323434334444556888888888877    555553

>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=98.87  E-value=5.2e-08  Score=82.13  Aligned_cols=114  Identities=19%  Similarity=0.150  Sum_probs=70.6

Q ss_pred             EEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCC-EEEEEEcCCCCCCCcccccCCCCCCCCCCChhH
Q 013898           35 HVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGD-LRFVFTAPYSPSISDAADAGNSSASLPTFDHAA  113 (434)
Q Consensus        35 HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~-i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~  113 (434)
                      ++.++|+|++++++||+++|||+.....+       ....+...++ +.+.+..+....             .+      
T Consensus         4 ~~~l~v~D~~~s~~FY~~~lG~~~~~~~~-------~~~~~~~~~~~~~l~l~~~~~~~-------------~~------   57 (119)
T cd08359           4 YPVIVTDDLAETADFYVRHFGFTVVFDSD-------WYVSLRSPDGGVELAFMLPGHET-------------VP------   57 (119)
T ss_pred             eeEEEECCHHHHHHHHHHhhCcEEEeccC-------cEEEEecCCCceEEEEccCCCCC-------------Cc------
Confidence            56899999999999999999999876522       1223333333 555554322110             00      


Q ss_pred             HhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEe
Q 013898          114 CRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYV  176 (434)
Q Consensus       114 ~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fv  176 (434)
                       .......+.++ +++|.|+|+++++++++++|++++.+|.......+...++++.|..+.|+
T Consensus        58 -~~~~~~~~~~~-~~~~~v~did~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~G~~ie~~  118 (119)
T cd08359          58 -AAQYQFQGQGL-ILNFEVDDVDAEYERLKAEGLPIVLPLRDEPWGQRHFIVRDPNGVLIDIV  118 (119)
T ss_pred             -chhcccCCceE-EEEEEECCHHHHHHHHHhcCCCeeeccccCCCcceEEEEECCCCCEEEEE
Confidence             01112344566 79999999999999999999987766654322223333444444444443

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.

>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC)

Probab=98.87  E-value=2e-08  Score=88.71  Aligned_cols=110  Identities=12%  Similarity=0.101  Sum_probs=72.8

Q ss_pred             eeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCC--ceEEEecccCCCCCCCchHHHHHhhcC
Q 013898          210 DHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDE--MVLLPMNEPVFGTKRKSQIQTYLEHNE  287 (434)
Q Consensus       210 DHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g--~v~i~L~e~~~g~~~~s~i~~fl~~~~  287 (434)
                      .||++.|+|++++++||+++|||++.....  +        ....+.....  ...+.+.                 ...
T Consensus         1 ~Hv~l~V~Dle~s~~Fy~~vLG~~~~~~~~--~--------~~~~l~~~~~~~~h~~~~~-----------------~~~   53 (141)
T cd07258           1 GHVVIGSENFEASRDSLVEDFGFRVSDLIE--D--------RIVFMRCHPNPFHHTFAVG-----------------PAS   53 (141)
T ss_pred             CcEEEecCCHHHHHHHHHhcCCCEeeeeeC--C--------EEEEEEcCCCCCcceeeec-----------------cCC
Confidence            499999999999999999999999875532  0        1122332211  1222211                 113


Q ss_pred             CCCceEEEEEeCCH---HHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEE
Q 013898          288 GAGVQHLALVSEDI---FRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQ  364 (434)
Q Consensus       288 G~GvqHIAf~vdDI---~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llq  364 (434)
                      ..|++||||.|+|+   +++.++|+++    |+++...| ..        .+          ......+|-+|++|.+++
T Consensus        54 ~~gl~Hiaf~v~~~~~v~~~~~~l~~~----G~~~~~~p-~~--------~~----------~~~~~~~y~~DPdG~~iE  110 (141)
T cd07258          54 SSHFHHVNFMVTDIDDIGKALYRIKAH----DVKVVFGP-GR--------HP----------PSDSIFFYFLDPDGITVE  110 (141)
T ss_pred             CCceEEEEEECCCHHHHHHHHHHHHHC----CCcEEeCC-ce--------EC----------CCCCEEEEEECCCCCEEE
Confidence            46799999999865   5678899888    99887543 21        11          012334688999999999


Q ss_pred             EEccc
Q 013898          365 IFTKP  369 (434)
Q Consensus       365 ifT~~  369 (434)
                      +...-
T Consensus       111 ~~~~~  115 (141)
T cd07258         111 YSFGM  115 (141)
T ss_pred             EEeCc
Confidence            86654

This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.

>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase

Probab=98.87  E-value=7.5e-08  Score=85.08  Aligned_cols=94  Identities=14%  Similarity=0.060  Sum_probs=62.1

Q ss_pred             CcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCC-EEEEEEcCCCCCCCcccccCCCCCCCC
Q 013898           29 RVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGD-LRFVFTAPYSPSISDAADAGNSSASLP  107 (434)
Q Consensus        29 ~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~-i~~vl~~p~~~~~~~~~~~~~~~~~~~  107 (434)
                      .+.+++||.+.|+|++++.+||+++|||++..+...+++.... ...++.++ ...+...                    
T Consensus         3 ~~~~l~Hv~l~v~Dle~s~~FY~~vLGf~~~~~~~~~~~~~~~-~~~l~~~~~~h~~~~~--------------------   61 (143)
T cd07243           3 GAHRLDHCLLTGEDIAETTRFFTDVLDFYLAERVVDPDGGTRV-GSFLSCSNKPHDIAFV--------------------   61 (143)
T ss_pred             CCceeCEEEEecCCHHHHHHHHHHhcCCEEEEEEecCCCCeEE-EEEEecCCCcceEEEe--------------------
Confidence            4689999999999999999999999999987664222221111 22223222 1111000                    


Q ss_pred             CCChhHHhHHHHhcCCceeEEEEEecCHHH---HHHHHHHcCCCCCCCCc
Q 013898          108 TFDHAACRSFAASHGLAARSIAVEVEDADV---AFNTSVAHGAKPSSPPV  154 (434)
Q Consensus       108 ~~~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~---a~~ra~~~Ga~~~~~p~  154 (434)
                                 ...+.++.|+||+|+|+++   +.+++.++|+++...|.
T Consensus        62 -----------~~~~~~~~Hiaf~v~d~~~l~~~~~~l~~~Gv~i~~~p~  100 (143)
T cd07243          62 -----------GGPDGKLHHFSFFLESWEDVLKAGDIISMNDVSIDIGPT  100 (143)
T ss_pred             -----------cCCCCCceEEEEEcCCHHHHHHHHHHHHHcCCceEECCc
Confidence                       0112467899999999777   67899999998655553

This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.

>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin

Probab=98.86  E-value=3.9e-08  Score=85.35  Aligned_cols=88  Identities=10%  Similarity=0.121  Sum_probs=63.8

Q ss_pred             EEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCChh
Q 013898           33 FHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHA  112 (434)
Q Consensus        33 l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~  112 (434)
                      |+||.|.|+|++++.+||++.|||+++....        ....+..++..+.+......     +               
T Consensus         1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~~~~--------~~~~~~~~~~~l~l~~~~~~-----~---------------   52 (131)
T cd08363           1 INHMTFSVSNLDKSISFYKHVFMEKLLVLGE--------KTAYFTIGGTWLALNEEPDI-----P---------------   52 (131)
T ss_pred             CceEEEEECCHHHHHHHHHHhhCCEEeccCC--------ccceEeeCceEEEEEccCCC-----C---------------
Confidence            6899999999999999999999999875421        12234557777777542110     0               


Q ss_pred             HHhHHHHhcCCceeEEEEEecC--HHHHHHHHHHcCCCCCCCC
Q 013898          113 ACRSFAASHGLAARSIAVEVED--ADVAFNTSVAHGAKPSSPP  153 (434)
Q Consensus       113 ~~~~~l~~hG~gv~~Iaf~V~D--vd~a~~ra~~~Ga~~~~~p  153 (434)
                         +  .....++.||||.|++  ++++++++.+.|+++..+|
T Consensus        53 ---~--~~~~~~~~hiaf~v~~~dld~~~~~l~~~G~~~~~~~   90 (131)
T cd08363          53 ---R--NEIRQSYTHIAFTIEDSEFDAFYTRLKEAGVNILPGR   90 (131)
T ss_pred             ---c--CCcCccceEEEEEecHHHHHHHHHHHHHcCCcccCCC
Confidence               0  0122467899999984  9999999999999876544

This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases

>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp

Probab=98.85  E-value=7.1e-08  Score=81.94  Aligned_cols=83  Identities=22%  Similarity=0.250  Sum_probs=60.8

Q ss_pred             CCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEe-CC---EEEEEEcCCCCCCCcccccCCCC
Q 013898           28 FRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRS-GD---LRFVFTAPYSPSISDAADAGNSS  103 (434)
Q Consensus        28 ~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~-G~---i~~vl~~p~~~~~~~~~~~~~~~  103 (434)
                      +.+.+++||.|.|+|++++.+||++.|||+++.+.+        ....++. ++   ..+.+..                
T Consensus         2 ~~i~~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~~~--------~~~~l~~~~~~~~~~~~l~~----------------   57 (121)
T cd09013           2 FDIAHLAHVELLTPKPEESLWFFTDVLGLEETGREG--------QSVYLRAWGDYEHHSLKLTE----------------   57 (121)
T ss_pred             CCccEeeEEEEEeCCHHHHHHHHHhCcCCEEEeecC--------CeEEEEeccCCCccEEEEee----------------
Confidence            568999999999999999999999999999886632        1223332 21   2222221                


Q ss_pred             CCCCCCChhHHhHHHHhcCCceeEEEEEec---CHHHHHHHHHHcCCCCC
Q 013898          104 ASLPTFDHAACRSFAASHGLAARSIAVEVE---DADVAFNTSVAHGAKPS  150 (434)
Q Consensus       104 ~~~~~~~~~~~~~~l~~hG~gv~~Iaf~V~---Dvd~a~~ra~~~Ga~~~  150 (434)
                                      .-..++.|+||.|+   |++++++++.++|+++.
T Consensus        58 ----------------~~~~~~~h~af~v~~~~~v~~~~~~l~~~G~~~~   91 (121)
T cd09013          58 ----------------SPEAGLGHIAWRASSPEALERRVAALEASGLGIG   91 (121)
T ss_pred             ----------------CCCCceEEEEEEcCCHHHHHHHHHHHHHcCCccc
Confidence                            01237889999997   58899999999999753

JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C

>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains

Probab=98.85  E-value=7e-08  Score=80.70  Aligned_cols=92  Identities=17%  Similarity=0.135  Sum_probs=63.2

Q ss_pred             EEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCC-EEEEEEcCCCCCCCcccccCCCCCCCCCCCh
Q 013898           33 FHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGD-LRFVFTAPYSPSISDAADAGNSSASLPTFDH  111 (434)
Q Consensus        33 l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~-i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~  111 (434)
                      +.||.|.|+|++++++||++.|||++..... +.    ....++..++ ..+.+......                    
T Consensus         1 ~~hi~l~v~d~~~s~~FY~~~lG~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~--------------------   55 (114)
T cd07247           1 PVWFELPTTDPERAKAFYGAVFGWTFEDMGD-GG----GDYAVFSTGGGAVGGLMKAPEP--------------------   55 (114)
T ss_pred             CEEEEeeCCCHHHHHHHHHhccCceeeeccC-CC----CceEEEEeCCccEEEEecCCCC--------------------
Confidence            4799999999999999999999999875532 11    1234555554 22222221100                    


Q ss_pred             hHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccc
Q 013898          112 AACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVIL  156 (434)
Q Consensus       112 ~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~  156 (434)
                          .   ..+.+..+++|.|+|+++++++++++|++++.+|...
T Consensus        56 ----~---~~~~~~~~~~f~v~di~~~~~~l~~~g~~~~~~~~~~   93 (114)
T cd07247          56 ----A---AGSPPGWLVYFAVDDVDAAAARVEAAGGKVLVPPTDI   93 (114)
T ss_pred             ----C---CCCCCeEEEEEEeCCHHHHHHHHHHCCCEEEeCCccc
Confidence                0   1223456899999999999999999999887776543

SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep

>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain

Probab=98.84  E-value=3e-08  Score=83.03  Aligned_cols=110  Identities=24%  Similarity=0.306  Sum_probs=77.0

Q ss_pred             eeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcC-CCceEEEecccCCCCCCCchHHHHHhh
Q 013898          207 RRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANN-DEMVLLPMNEPVFGTKRKSQIQTYLEH  285 (434)
Q Consensus       207 ~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~-~g~v~i~L~e~~~g~~~~s~i~~fl~~  285 (434)
                      ++|+|+++.|+|++++.+||+++|||+......           ...++..+ .+...+.+...                
T Consensus         1 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~----------------   53 (117)
T cd07240           1 RRIAYAELEVPDLERALEFYTDVLGLTVLDRDA-----------GSVYLRCSEDDHHSLVLTEG----------------   53 (117)
T ss_pred             CceeEEEEecCCHHHHHHHHHhccCcEEEeecC-----------CeEEEecCCCCcEEEEEEeC----------------
Confidence            378999999999999999999999999875421           01233333 33444444332                


Q ss_pred             cCCCCceEEEEEeC---CHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceE
Q 013898          286 NEGAGVQHLALVSE---DIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTL  362 (434)
Q Consensus       286 ~~G~GvqHIAf~vd---DI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~l  362 (434)
                       ...++.|+||.|+   |+++..++|+++    |+++...| ..      . .+            .....+-.|++|.+
T Consensus        54 -~~~~~~h~~~~v~~~~~v~~~~~~l~~~----g~~~~~~~-~~------~-~~------------~~~~~~~~DP~G~~  108 (117)
T cd07240          54 -DEPGVDALGFEVASEEDLEALAAHLEAA----GVAPEEAS-DP------E-PG------------VGRGLRFQDPDGHL  108 (117)
T ss_pred             -CCCCceeEEEEcCCHHHHHHHHHHHHHc----CCceEEcC-cc------C-CC------------CceEEEEECCCCCE
Confidence             1356899999997   689999999999    99988654 20      0 00            11234667888999


Q ss_pred             EEEEcc
Q 013898          363 LQIFTK  368 (434)
Q Consensus       363 lqifT~  368 (434)
                      ++++..
T Consensus       109 ie~~~~  114 (117)
T cd07240         109 LELFVE  114 (117)
T ss_pred             EEEEEc
Confidence            998865

This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa

>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases

Probab=98.84  E-value=3.5e-08  Score=83.54  Aligned_cols=112  Identities=20%  Similarity=0.196  Sum_probs=75.9

Q ss_pred             eeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCC--CceEEEecccCCCCCCCchHHHHH
Q 013898          206 IRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANND--EMVLLPMNEPVFGTKRKSQIQTYL  283 (434)
Q Consensus       206 l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~--g~v~i~L~e~~~g~~~~s~i~~fl  283 (434)
                      +++|+|+++.|+|++++.+||+++|||+......    .       ..++....  ....+.+..+              
T Consensus         2 ~~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~----~-------~~~~~~~~~~~~~~~~~~~~--------------   56 (121)
T cd07266           2 ILRLGHVELRVTDLEKSREFYVDVLGLVETEEDD----D-------RIYLRGLEEFIHHSLVLTKA--------------   56 (121)
T ss_pred             cceeeEEEEEcCCHHHHHHHHHhccCCEEeccCC----C-------eEEEEecCCCceEEEEEeeC--------------
Confidence            6789999999999999999999999999764311    0       11122111  1223333221              


Q ss_pred             hhcCCCCceEEEEEe---CCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCc
Q 013898          284 EHNEGAGVQHLALVS---EDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQG  360 (434)
Q Consensus       284 ~~~~G~GvqHIAf~v---dDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g  360 (434)
                         ...|+.|++|.|   +|+++..++|+++    |+++...|+... .      +            ....+|-.|++|
T Consensus        57 ---~~~~~~hi~~~v~~~~dv~~~~~~l~~~----g~~~~~~~~~~~-~------~------------~~~~~~~~DPdG  110 (121)
T cd07266          57 ---PVAGLGHIAFRVRSEEDLDKAEAFFQEL----GLPTEWVEAGEE-P------G------------QGRALRVEDPLG  110 (121)
T ss_pred             ---CCCceeEEEEECCCHHHHHHHHHHHHHc----CCCcccccCCcC-C------C------------CccEEEEECCCC
Confidence               235799999999   5789999999999    999876532111 0      0            012457789999


Q ss_pred             eEEEEEcc
Q 013898          361 TLLQIFTK  368 (434)
Q Consensus       361 ~llqifT~  368 (434)
                      ..+++|+.
T Consensus       111 ~~ve~~~~  118 (121)
T cd07266         111 FPIEFYAE  118 (121)
T ss_pred             CEEEEEec
Confidence            99999864

This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ

>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain

Probab=98.83  E-value=8e-08  Score=83.04  Aligned_cols=116  Identities=22%  Similarity=0.284  Sum_probs=76.3

Q ss_pred             eeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcCCC
Q 013898          210 DHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGA  289 (434)
Q Consensus       210 DHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G~  289 (434)
                      +||++.|+|++++.+||+++|||+......  .++.    ....++..+.....+.+....                ...
T Consensus         1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~--~~~~----~~~~~~~~~~~~~~l~~~~~~----------------~~~   58 (131)
T cd08343           1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVG--DPGV----DAAAFLRCDEDHHDLALFPGP----------------ERP   58 (131)
T ss_pred             CcEEEEcCCHHHHHHHHHhcCCCEEEEEEc--cCCc----eeEEEEEcCCCcceEEEEcCC----------------CCC
Confidence            699999999999999999999999765432  1110    122333333333344443321                146


Q ss_pred             CceEEEEEeCCHH---HHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEEEE
Q 013898          290 GVQHLALVSEDIF---RTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIF  366 (434)
Q Consensus       290 GvqHIAf~vdDI~---~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llqif  366 (434)
                      |++|++|.|+|++   +.+++|+++    |++++..| ....      .+            ....++-+|++|++++|+
T Consensus        59 ~~~hl~~~v~d~~~~~~~~~~l~~~----G~~i~~~~-~~~~------~~------------~~~~~~~~DPdG~~iei~  115 (131)
T cd08343          59 GLHHVAFEVESLDDILRAADRLAAN----GIQIEFGP-GRHG------PG------------NNLFLYFRDPDGNRVELS  115 (131)
T ss_pred             CeeEEEEEcCCHHHHHHHHHHHHHc----CCeeEECC-CccC------CC------------CcEEEEEECCCCCEEEEE
Confidence            7999999999985   678899998    99998654 2100      00            012346788899999988


Q ss_pred             cccc
Q 013898          367 TKPV  370 (434)
Q Consensus       367 T~~~  370 (434)
                      +...
T Consensus       116 ~~~~  119 (131)
T cd08343         116 AEMY  119 (131)
T ss_pred             cCCc
Confidence            6543

This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are

>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins

Probab=98.83  E-value=1e-07  Score=85.66  Aligned_cols=113  Identities=17%  Similarity=0.056  Sum_probs=75.3

Q ss_pred             eEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeC---CEEEEEEcCCCCCCCcccccCCCCCCCCC
Q 013898           32 RFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSG---DLRFVFTAPYSPSISDAADAGNSSASLPT  108 (434)
Q Consensus        32 ~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G---~i~~vl~~p~~~~~~~~~~~~~~~~~~~~  108 (434)
                      |++||.+.|+|++++.+||++.|||++..+..       ....++..|   +..|.|..+....                
T Consensus         1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~-------~~~~~~~~~~~~~~~l~l~~~~~~~----------------   57 (157)
T cd08347           1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEEG-------DRVRLEEGGGGPGAVVDVLEEPDQP----------------   57 (157)
T ss_pred             CcccEEEEeCCHHHHHHHHHHhcCCEEEeeeC-------CEEEEEecCCCCCCEEEEEeCCCCC----------------
Confidence            58999999999999999999999999886632       122333333   5666665531100                


Q ss_pred             CChhHHhHHHHhcC-CceeEEEEEecC---HHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEeec
Q 013898          109 FDHAACRSFAASHG-LAARSIAVEVED---ADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSY  178 (434)
Q Consensus       109 ~~~~~~~~~l~~hG-~gv~~Iaf~V~D---vd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd~  178 (434)
                               ....+ .++.||||.|+|   +++++++++++|+++ ..+... +......++.+.|..++++..
T Consensus        58 ---------~~~~~~~~l~Hiaf~v~d~~dvd~~~~~L~~~Gv~~-~~~~~~-~~~~s~yf~DPdG~~iEl~~~  120 (157)
T cd08347          58 ---------RGRPGAGTVHHVAFRVPDDEELEAWKERLEALGLPV-SGIVDR-FYFKSLYFREPGGILFEIATD  120 (157)
T ss_pred             ---------CCcccCCceEEEEEECCCHHHHHHHHHHHHHCCCCc-cccccc-ccEEEEEEECCCCcEEEEEEC
Confidence                     00112 478899999998   899999999999974 344322 112223355666667766653

The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.

>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins

Probab=98.83  E-value=9.6e-08  Score=77.58  Aligned_cols=105  Identities=21%  Similarity=0.252  Sum_probs=77.6

Q ss_pred             EEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCChhHH
Q 013898           35 HVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHAAC  114 (434)
Q Consensus        35 HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (434)
                      ||.+.|+|.+++++||++.|||+.......  .  ......++.++..|.|..+....                   .  
T Consensus         1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~--~--~~~~~~~~~~~~~i~l~~~~~~~-------------------~--   55 (112)
T cd06587           1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGN--G--GAEFAVLGLGGTRLELFEGDEPA-------------------P--   55 (112)
T ss_pred             CcceeeCCHHHHHHHHHhccCCEEEEeecc--C--CEEEEEEecCCceEEEecCCCCC-------------------C--
Confidence            899999999999999999999998877531  0  13456667778888888753211                   0  


Q ss_pred             hHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEeec
Q 013898          115 RSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSY  178 (434)
Q Consensus       115 ~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd~  178 (434)
                      .    .++.++.+++|+|+|++++++++.++|+.+...+...          .+++..+++.|+
T Consensus        56 ~----~~~~~~~~~~~~v~~~~~~~~~l~~~g~~~~~~~~~~----------~~~~~~~~~~Dp  105 (112)
T cd06587          56 A----PSGGGGVHLAFEVDDVDAAYERLKAAGVEVLGEPREE----------PWGGRVAYFRDP  105 (112)
T ss_pred             c----ccCCCeeEEEEECCCHHHHHHHHHHcCCcccCCCcCC----------CCCcEEEEEECC
Confidence            0    3456788999999999999999999999877666422          134556666664

This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas

>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1

Probab=98.81  E-value=6.4e-08  Score=83.58  Aligned_cols=117  Identities=21%  Similarity=0.244  Sum_probs=77.3

Q ss_pred             eeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcC-CCceEEEecccCCCCCCCchHHHHHhhc
Q 013898          208 RLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANN-DEMVLLPMNEPVFGTKRKSQIQTYLEHN  286 (434)
Q Consensus       208 ~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~-~g~v~i~L~e~~~g~~~~s~i~~fl~~~  286 (434)
                      +|+|+++.|+|++++++||+++|||+......  .       .....+..+ .....+.+.....   .. .      ..
T Consensus         1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~--~-------~~~~~~~~~~~~~~~l~l~~~~~---~~-~------~~   61 (134)
T cd08348           1 RLSHVVLYVRDLEAMVRFYRDVLGFTVTDRGP--L-------GGLVFLSRDPDEHHQIALITGRP---AA-P------PP   61 (134)
T ss_pred             CeeEEEEEecCHHHHHHHHHHhcCCEEEeecc--C-------CcEEEEEecCCCceEEEEEecCC---CC-C------CC
Confidence            58999999999999999999999999765421  1       012233322 2345666655421   11 0      12


Q ss_pred             CCCCceEEEEEeCCHH---HHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEE
Q 013898          287 EGAGVQHLALVSEDIF---RTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLL  363 (434)
Q Consensus       287 ~G~GvqHIAf~vdDI~---~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~ll  363 (434)
                      ...|++|+||.|+|+.   +..++|.+.    |++++..+ ..         +            .....+-+|++|.++
T Consensus        62 ~~~~~~h~~f~v~~~~~v~~~~~~l~~~----G~~~~~~~-~~---------~------------~~~~~~~~DP~G~~i  115 (134)
T cd08348          62 GPAGLNHIAFEVDSLDDLRDLYERLRAA----GITPVWPV-DH---------G------------NAWSIYFRDPDGNRL  115 (134)
T ss_pred             CCCCceEEEEEeCCHHHHHHHHHHHHHC----CCCccccC-CC---------C------------ceeEEEEECCCCCEE
Confidence            3567999999999865   477888888    98877532 11         0            012346788999999


Q ss_pred             EEEccc
Q 013898          364 QIFTKP  369 (434)
Q Consensus       364 qifT~~  369 (434)
                      .+++..
T Consensus       116 e~~~~~  121 (134)
T cd08348         116 ELFVDT  121 (134)
T ss_pred             EEEEcC
Confidence            998654

13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are

>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=98.81  E-value=1.6e-07  Score=79.72  Aligned_cols=115  Identities=17%  Similarity=0.101  Sum_probs=72.7

Q ss_pred             EEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCChhHHhH
Q 013898           37 EFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHAACRS  116 (434)
Q Consensus        37 ~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (434)
                      .|.|+|++++++||+++|||++......+.+.  .....++.++..+++.......           ..         ..
T Consensus         4 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~--~~~~~l~~~~~~~~l~~~~~~~-----------~~---------~~   61 (122)
T cd08355           4 TLRYRDAAAAIDWLTDAFGFEERLVVPDDDGG--VAHAELRFGDGGVMVGSVRDDY-----------RA---------SS   61 (122)
T ss_pred             EEEECCHHHHHHHHHHhcCCEEEEEEeCCCCc--EEEEEEEECCEEEEEecCCCcc-----------cc---------cc
Confidence            57899999999999999999998765322221  2233456677777775432110           00         00


Q ss_pred             HHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEE
Q 013898          117 FAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLR  174 (434)
Q Consensus       117 ~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~  174 (434)
                       ....+.+..+++|.|+|+++++++++++|++++.+|...........++++.|..+.
T Consensus        62 -~~~~~~~~~~~~~~v~d~d~~~~~l~~~G~~v~~~~~~~~~g~~~~~~~DPdG~~~~  118 (122)
T cd08355          62 -ARAGGAGTQGVYVVVDDVDAHYERARAAGAEILREPTDTPYGSREFTARDPEGNLWT  118 (122)
T ss_pred             -cccCCCceEEEEEEECCHHHHHHHHHHCCCEEeeCccccCCCcEEEEEECCCCCEEE
Confidence             112334566899999999999999999999988777543222223334444443333

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.

>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins

Probab=98.81  E-value=1.1e-07  Score=80.20  Aligned_cols=96  Identities=19%  Similarity=0.118  Sum_probs=63.0

Q ss_pred             eEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEe----CCEEEEEEcCCCCCCCcccccCCCCCCCC
Q 013898           32 RFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRS----GDLRFVFTAPYSPSISDAADAGNSSASLP  107 (434)
Q Consensus        32 ~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~----G~i~~vl~~p~~~~~~~~~~~~~~~~~~~  107 (434)
                      +++||.+.|+|++++++||++.|||++......+.+.. .....+..    ++..+.|........              
T Consensus         1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~l~~~~~~~~--------------   65 (126)
T cd08346           1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPG-TYHLFFGDGLGSPGTLLTFFEWPDAGP--------------   65 (126)
T ss_pred             CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCc-eEEEEEecCCCCCCCEEEEEecCCCCC--------------
Confidence            57999999999999999999999999887654222111 11222322    344565554321100              


Q ss_pred             CCChhHHhHHHHhcCCceeEEEEEecC---HHHHHHHHHHcCCCCCC
Q 013898          108 TFDHAACRSFAASHGLAARSIAVEVED---ADVAFNTSVAHGAKPSS  151 (434)
Q Consensus       108 ~~~~~~~~~~l~~hG~gv~~Iaf~V~D---vd~a~~ra~~~Ga~~~~  151 (434)
                              . ......+..|+||.|+|   ++++++++.++|+++..
T Consensus        66 --------~-~~~~~~~~~hi~f~v~~~~~~~~~~~~~~~~g~~~~~  103 (126)
T cd08346          66 --------K-GRRGPGQIHHIAFSVPSEASLDAWRERLRAAGVPVSG  103 (126)
T ss_pred             --------C-CCCCCCcEEEEEEEcCCHHHHHHHHHHHHHcCCcccc
Confidence                    0 00122367899999984   69999999999998654

The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.

>PRK06724 hypothetical protein; Provisional

Probab=98.80  E-value=6.5e-08  Score=83.99  Aligned_cols=114  Identities=11%  Similarity=0.166  Sum_probs=74.6

Q ss_pred             eeeeeeeeEecCCHHHHHHHHHHhh---CCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHH
Q 013898          206 IRRLDHAVGNVPELAPAVAYVKSFT---GFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTY  282 (434)
Q Consensus       206 l~~iDHv~i~V~dl~~~~~fY~~vL---Gf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~f  282 (434)
                      ..+||||++.|+|+++++.||+++|   ||+......               .  ..+..++.|....    ..      
T Consensus         5 ~~~i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~~~~~~---------------~--~~g~~~l~l~~~~----~~------   57 (128)
T PRK06724          5 RAGIHHIEFWVANLEESISFYDMLFSIIGWRKLNEVA---------------Y--STGESEIYFKEVD----EE------   57 (128)
T ss_pred             CcccCEEEEEeCCHHHHHHHHHHHHhhCCcEEeeeEe---------------e--eCCCeeEEEecCC----cc------
Confidence            5679999999999999999999977   555432110               0  1123444443321    00      


Q ss_pred             HhhcCCCCceEEEEEe---CCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCC
Q 013898          283 LEHNEGAGVQHLALVS---EDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQ  359 (434)
Q Consensus       283 l~~~~G~GvqHIAf~v---dDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~  359 (434)
                      +.  ...|+.|+||.|   +|+++..++|+++    |++++..| ..+..     .+           ...-.++-+|++
T Consensus        58 ~~--~~~g~~h~af~v~~~~dvd~~~~~l~~~----G~~~~~~p-~~~~~-----~~-----------~g~~~~~f~DPd  114 (128)
T PRK06724         58 IV--RTLGPRHICYQAINRKVVDEVAEFLSST----KIKIIRGP-MEMNH-----YS-----------EGYYTIDFYDPN  114 (128)
T ss_pred             cc--CCCCceeEEEecCChHHHHHHHHHHHHC----CCEEecCC-cccCC-----CC-----------CCEEEEEEECCC
Confidence            11  235789999998   7899999999999    99998643 33210     00           011245678999


Q ss_pred             ceEEEEEccc
Q 013898          360 GTLLQIFTKP  369 (434)
Q Consensus       360 g~llqifT~~  369 (434)
                      |..++++..|
T Consensus       115 G~~iEl~~~~  124 (128)
T PRK06724        115 GFIIEVAYTP  124 (128)
T ss_pred             CCEEEEEeCC
Confidence            9999987654

>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=98.80  E-value=6e-08  Score=79.79  Aligned_cols=106  Identities=19%  Similarity=0.110  Sum_probs=70.9

Q ss_pred             EEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCE-EEEEEcCCCCCCCcccccCCCCCCCCCCCh
Q 013898           33 FHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDL-RFVFTAPYSPSISDAADAGNSSASLPTFDH  111 (434)
Q Consensus        33 l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i-~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~  111 (434)
                      |+||.+.|+|.+++.+||++.|||+.+.+....     .....+..++. .+.|.......                   
T Consensus         1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~-----~~~~~~~~~~~~~i~l~~~~~~~-------------------   56 (114)
T cd07245           1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFL-----FPGAWLYAGDGPQLHLIEEDPPD-------------------   56 (114)
T ss_pred             CCeEEEecCCHHHHHHHHHHccCCcccCcCCCC-----CCceEEEeCCCcEEEEEecCCCc-------------------
Confidence            689999999999999999999999977543211     01223333333 45554321110                   


Q ss_pred             hHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEeec
Q 013898          112 AACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSY  178 (434)
Q Consensus       112 ~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd~  178 (434)
                      .  .   ...+.+..+++|+|+|++++++++.++|++++..+..           .+|+..+++.|+
T Consensus        57 ~--~---~~~~~~~~~~~~~v~d~~~~~~~l~~~g~~~~~~~~~-----------~~~~~~~~~~DP  107 (114)
T cd07245          57 A--L---PEGPGRDDHIAFRVDDLDAFRARLKAAGVPYTESDVP-----------GDGVRQLFVRDP  107 (114)
T ss_pred             c--c---cCCCcccceEEEEeCCHHHHHHHHHHcCCCcccccCC-----------CCCccEEEEECC
Confidence            0  0   1233467899999999999999999999997765532           135555677774

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.

>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp

Probab=98.80  E-value=1.8e-07  Score=84.79  Aligned_cols=120  Identities=15%  Similarity=0.133  Sum_probs=77.4

Q ss_pred             CCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCC--EEEEEEcCCCCCCCcccccCCCCCC
Q 013898           28 FRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGD--LRFVFTAPYSPSISDAADAGNSSAS  105 (434)
Q Consensus        28 ~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~--i~~vl~~p~~~~~~~~~~~~~~~~~  105 (434)
                      +.|.+|+||.|+|+|++++++||++.|||+++.....+.+.  .....++.++  ..+.+...  ..             
T Consensus         2 ~~i~~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~l~~~--~~-------------   64 (166)
T cd09014           2 VGVRRLDHVNLLASDVDANRDFMEEVLGFRLREQIRLDNGK--EAGAWMSVSNKVHDVAYTRD--PA-------------   64 (166)
T ss_pred             CCcceeeeEEEEcCCHHHHHHHHHHccCCEEEEEEecCCCc--eEEEEEeCCCCceeEEEecC--CC-------------
Confidence            46899999999999999999999999999987653322211  1122333322  23333210  00             


Q ss_pred             CCCCChhHHhHHHHhcCCceeEEEEEecCH---HHHHHHHHHcCCCCCCCCccccC-ceEEEEEEecCCeEEEEeec
Q 013898          106 LPTFDHAACRSFAASHGLAARSIAVEVEDA---DVAFNTSVAHGAKPSSPPVILDN-LAVIAEVQLYGDVVLRYVSY  178 (434)
Q Consensus       106 ~~~~~~~~~~~~l~~hG~gv~~Iaf~V~Dv---d~a~~ra~~~Ga~~~~~p~~~~~-~~~~~~i~~~Gg~~~~fvd~  178 (434)
                                    ....++.||||+|+|.   ++++++++++|+++...|..... .....-++.++|..+++...
T Consensus        65 --------------~~~~~~~hiaf~v~~~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~  127 (166)
T cd09014          65 --------------GARGRLHHLAYALDTREDVLRAADIFLENGIFIEAGPGKHGIQQTFFLYVYEPGGNRVELFGG  127 (166)
T ss_pred             --------------CCCCCceEEEEECCCHHHHHHHHHHHHHcCCccccCCcccCCCCceEEEEECCCCCEEEEEEc
Confidence                          0113578999999864   58889999999997666643211 12234466778878887764

JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th

>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins

Probab=98.80  E-value=4.2e-08  Score=82.75  Aligned_cols=113  Identities=19%  Similarity=0.210  Sum_probs=74.5

Q ss_pred             eeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCC-ceEEEecccCCCCCCCchHHHHHh
Q 013898          206 IRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDE-MVLLPMNEPVFGTKRKSQIQTYLE  284 (434)
Q Consensus       206 l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g-~v~i~L~e~~~g~~~~s~i~~fl~  284 (434)
                      +++|+|+.+.|+|++++.+||+++|||+......           ...++...+. ...+.+...               
T Consensus         1 ~~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~---------------   54 (120)
T cd08362           1 VTALRGVGLGVPDLAAAAAFYREVWGLSVVAEDD-----------GIVYLRATGSEHHILRLRRS---------------   54 (120)
T ss_pred             CceeeEEEEecCCHHHHHHHHHhCcCcEEEEecC-----------CEEEEECCCCccEEEEeccC---------------
Confidence            4689999999999999999999999999764321           0123332221 222333211               


Q ss_pred             hcCCCCceEEEEEe---CCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCce
Q 013898          285 HNEGAGVQHLALVS---EDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGT  361 (434)
Q Consensus       285 ~~~G~GvqHIAf~v---dDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~  361 (434)
                        ..++++|+||.|   +|+++.+++|++.    |+++...| ..       +..      .    .....++-.|++|.
T Consensus        55 --~~~~~~~~~~~v~~~~~l~~~~~~l~~~----G~~~~~~~-~~-------~~~------~----~~~~~~~~~DP~G~  110 (120)
T cd08362          55 --DRNRLDVVSFSVASRADVDALARQVAAR----GGTVLSEP-GA-------TDD------P----GGGYGFRFFDPDGR  110 (120)
T ss_pred             --CCCCCceEEEEeCCHHHHHHHHHHHHHc----CCceecCC-cc-------cCC------C----CCceEEEEECCCCC
Confidence              134688999999   5789999999999    99987532 21       000      0    01123466788898


Q ss_pred             EEEEEcc
Q 013898          362 LLQIFTK  368 (434)
Q Consensus       362 llqifT~  368 (434)
                      .+.+++.
T Consensus       111 ~iel~~~  117 (120)
T cd08362         111 LIEFSAD  117 (120)
T ss_pred             EEEEEec
Confidence            8888764

2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge

>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]

Probab=98.80  E-value=1.5e-06  Score=83.15  Aligned_cols=217  Identities=15%  Similarity=0.110  Sum_probs=124.4

Q ss_pred             cceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCC
Q 013898           30 VNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTF  109 (434)
Q Consensus        30 i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~  109 (434)
                      -+.+.-|+|.|+|++.+..||++++|+++..+..        .+.++..|+..++..+..... . +|            
T Consensus         8 ~~~v~~v~L~vrdL~~~~~FY~~ilGL~v~~~~~--------~~v~L~vgg~~LL~L~q~~~a-~-~~------------   65 (265)
T COG2514           8 PTFVGAVTLNVRDLDSMTSFYQEILGLQVLEETD--------GSVTLGVGGTPLLTLEQFPDA-R-RP------------   65 (265)
T ss_pred             CcEEEEEEEEeccHHHHHHHHHHhhCCeeeeccC--------ceEEEeeCCEEEEEEEeCCCC-C-CC------------
Confidence            3678999999999999999999999999997743        356677777644444422111 0 00            


Q ss_pred             ChhHHhHHHHhcCCceeEEEEEecC---HHHHHHHHHHcCCCCCCC-CccccCceEEEEEEecCCeEEEEee-ccCcCCC
Q 013898          110 DHAACRSFAASHGLAARSIAVEVED---ADVAFNTSVAHGAKPSSP-PVILDNLAVIAEVQLYGDVVLRYVS-YKDKANH  184 (434)
Q Consensus       110 ~~~~~~~~l~~hG~gv~~Iaf~V~D---vd~a~~ra~~~Ga~~~~~-p~~~~~~~~~~~i~~~Gg~~~~fvd-~~~~~~~  184 (434)
                               ..+..|..|+||.+++   +..++.+|...|..+... .... .|.-  -+.++.|.-+++.- +|...+ 
T Consensus        66 ---------~~~~aGLyH~AfLlP~r~~L~~~l~hl~~~~~~l~Ga~DH~v-SEAl--Yl~DPEGNGIEiYaDrp~~~W-  132 (265)
T COG2514          66 ---------PPRAAGLYHTAFLLPTREDLARVLNHLAEEGIPLVGASDHLV-SEAL--YLEDPEGNGIEIYADRPRSTW-  132 (265)
T ss_pred             ---------CccccceeeeeeecCCHHHHHHHHHHHHhcCCcccccCcchh-heee--eecCCCCCeEEEEecCChHHh-
Confidence                     1244699999999995   677888888998875311 1111 0100  01123333333332 111111 


Q ss_pred             CCCCCCC-----ccCC-----C-CC-CC-CcccceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCce
Q 013898          185 LDFLPGF-----EPTD-----E-IS-SF-PLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLN  251 (434)
Q Consensus       185 g~~~p~f-----~~~~-----~-~~-~~-~~~~~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~  251 (434)
                       .|..+-     .+..     . .. .. ..-..-+.|-||.+.|.|++++.+||+++|||+...+.+           .
T Consensus       133 -~~~~~~v~m~t~~ld~~~ll~~~~~~~~~g~p~~t~IGHvHL~v~~l~eA~~fY~~~LG~~~~~~~~-----------~  200 (265)
T COG2514         133 -DWQNDQVKMDTEPLDVEALLEEATKEPWTGLPAGTIIGHVHLKVADLEEAEQFYEDVLGLEVTARGP-----------S  200 (265)
T ss_pred             -cccCCeeeecccccCHHHHhhhccccccccCCCCcEEeEEEEEeCCHHHHHHHHHHhcCCeeeecCC-----------c
Confidence             121110     0000     0 00 00 001135789999999999999999999999999876521           1


Q ss_pred             EEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcCCCCceEEEEEeCC
Q 013898          252 SVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSED  300 (434)
Q Consensus       252 s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G~GvqHIAf~vdD  300 (434)
                      ..++.+++=...|..|.-.....++       ....-.|+-.+.+.+.+
T Consensus       201 A~F~a~G~YHHHia~N~W~s~~~~~-------~~~~~~GLa~~~i~~~~  242 (265)
T COG2514         201 ALFLASGDYHHHLAANTWNSRGARP-------RNANASGLAWLEIHTPD  242 (265)
T ss_pred             ceEEecCCcceeEEEeccccCCCCC-------CCCCCCCcceEEEEcCC
Confidence            2334444444566666543110000       01134678888888876

>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway

Probab=98.80  E-value=7.3e-08  Score=86.07  Aligned_cols=120  Identities=13%  Similarity=-0.024  Sum_probs=72.0

Q ss_pred             eEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCCh
Q 013898           32 RFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDH  111 (434)
Q Consensus        32 ~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~  111 (434)
                      +|+||.|+|+|++++++||+++|||++..+...+.. ......+++.++..    ....                    .
T Consensus         1 ri~Hv~l~V~Dle~a~~FY~~~LG~~~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~--------------------~   55 (153)
T cd07257           1 RLGHVVLEVPDFAASFDWYTETFGLKPSDVIYLPGP-GNPVAAFLRLDRGE----EYVD--------------------H   55 (153)
T ss_pred             CccEEEEecCCHHHHHHHHHHhcCCeEEeeEecCCC-CCcEEEEEecCCCC----Cccc--------------------c
Confidence            489999999999999999999999998755322100 01122333322100    0000                    0


Q ss_pred             hHHhHHHHhcCCceeEEEEEecCHHHHH---HHHHHcCCCCCCCCcccc-CceEEEEEEecCCeEEEEee
Q 013898          112 AACRSFAASHGLAARSIAVEVEDADVAF---NTSVAHGAKPSSPPVILD-NLAVIAEVQLYGDVVLRYVS  177 (434)
Q Consensus       112 ~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~---~ra~~~Ga~~~~~p~~~~-~~~~~~~i~~~Gg~~~~fvd  177 (434)
                      ..+.- ....+.++.||||+|+|++++.   ++++++|+++...|.... +.....-++++.|..+++..
T Consensus        56 ~~~~l-~~~~~~g~~Hiaf~v~die~~~~~~~~L~~~Gv~v~~~~g~~~~g~~~~~y~~DPdG~~iEl~~  124 (153)
T cd07257          56 HTLAL-AQGPESGVHHAAFEVHDFDAQGLGHDYLREKGYEHVWGVGRHILGSQIFDYWFDPWGFIVEHYT  124 (153)
T ss_pred             hHHHH-hcCCCCceeEEEEEcCCHHHHHHHHHHHHHCCCcEeecCCccCCCCCEEEEEECCCCCEEEEEc
Confidence            01111 1222468999999999999886   999999998765543211 11223334566666666653

This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.

>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins

Probab=98.78  E-value=1.4e-07  Score=79.09  Aligned_cols=106  Identities=22%  Similarity=0.256  Sum_probs=70.5

Q ss_pred             eeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcC
Q 013898          208 RLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNE  287 (434)
Q Consensus       208 ~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~  287 (434)
                      +|+||++.|+|++++.+||+ .|||+.....    ..     .  .....+.+...+.+..+                 .
T Consensus         2 ~i~hv~l~v~d~~~s~~FY~-~lG~~~~~~~----~~-----~--~~~~~~~~~~~~~~~~~-----------------~   52 (112)
T cd08344           2 SIDHFALEVPDLEVARRFYE-AFGLDVREEG----DG-----L--ELRTAGNDHRWARLLEG-----------------A   52 (112)
T ss_pred             ceeEEEEecCCHHHHHHHHH-HhCCcEEeec----Cc-----e--EEEecCCCceEEEeecC-----------------C
Confidence            69999999999999999997 7999986431    00     1  11111223344444332                 1


Q ss_pred             CCCceEEEEE--eCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEEE
Q 013898          288 GAGVQHLALV--SEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQI  365 (434)
Q Consensus       288 G~GvqHIAf~--vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llqi  365 (434)
                      +.+++|++|.  ++|+++++++|++.    |++++..| ...        +             ..-++-.|++|..+++
T Consensus        53 ~~~~~~~~~~~~~~d~~~~~~~l~~~----Gi~~~~~~-~~~--------~-------------~~~~~~~DP~Gn~iel  106 (112)
T cd08344          53 RKRLAYLSFGIFEDDFAAFARHLEAA----GVALAAAP-PGA--------D-------------PDGVWFRDPDGNLLQV  106 (112)
T ss_pred             CCceeeEEEEeEhhhHHHHHHHHHHc----CCceecCC-CcC--------C-------------CCEEEEECCCCCEEEE
Confidence            2346676555  58999999999999    99987542 110        0             1125778999999999


Q ss_pred             Ecc
Q 013898          366 FTK  368 (434)
Q Consensus       366 fT~  368 (434)
                      ++-
T Consensus       107 ~~~  109 (112)
T cd08344         107 KVA  109 (112)
T ss_pred             ecC
Confidence            864

This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.

>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase

Probab=98.78  E-value=5.7e-08  Score=95.54  Aligned_cols=114  Identities=14%  Similarity=0.170  Sum_probs=78.6

Q ss_pred             eeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhh
Q 013898          206 IRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEH  285 (434)
Q Consensus       206 l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~  285 (434)
                      +.+|+|+++.|+|++++.+||+++|||+.....   +.     +  ..++..+.....+.+...                
T Consensus         1 ~~~i~~v~l~V~Dl~~s~~FY~~~LGl~~~~~~---~~-----~--~~~~~~~~~~~~~~l~~~----------------   54 (286)
T TIGR03213         1 VRGLGYLGIGVSDVDAWREFATEVLGMMVASEG---EN-----D--ALYLRLDSRAHRIAVHPG----------------   54 (286)
T ss_pred             CceeeEEEEEeCCHHHHHHHHHhccCcccccCC---CC-----c--eEEEEcCCCceEEEEEEC----------------
Confidence            468999999999999999999999999875321   11     1  123333333445555332                


Q ss_pred             cCCCCceEEEEEeCC---HHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceE
Q 013898          286 NEGAGVQHLALVSED---IFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTL  362 (434)
Q Consensus       286 ~~G~GvqHIAf~vdD---I~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~l  362 (434)
                       ...++.|+||.|+|   +.+..++|+++    |+++...| ..   ....             --....++-.|++|..
T Consensus        55 -~~~~~~~~~f~V~~~~~l~~~~~~L~~~----Gv~~~~~~-~~---~~~~-------------~~~~~~~~f~DPdGn~  112 (286)
T TIGR03213        55 -ESDDLAYAGWEVADEAGLDQVKEKLEKA----GVAVTVAS-AA---EARE-------------RGVLGLIKFTDPGGNP  112 (286)
T ss_pred             -CcCCeeeEeeeeCCHHHHHHHHHHHHHc----CCceEECC-HH---Hhhh-------------ccceEEEEEECCCCCE
Confidence             12458899999999   88899999999    99988654 11   0100             0123457888999999


Q ss_pred             EEEEc
Q 013898          363 LQIFT  367 (434)
Q Consensus       363 lqifT  367 (434)
                      |++|+
T Consensus       113 lEl~~  117 (286)
T TIGR03213       113 LEIYY  117 (286)
T ss_pred             EEEEE
Confidence            99996

Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.

>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B

Probab=98.78  E-value=4.7e-08  Score=89.32  Aligned_cols=171  Identities=19%  Similarity=0.122  Sum_probs=84.9

Q ss_pred             EEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCChh
Q 013898           33 FHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHA  112 (434)
Q Consensus        33 l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~  112 (434)
                      ||||.++|+|++++.++|.+.|||.++....-+.+  .+...++.-++..|+|.++. +.   .+        .+.+..-
T Consensus         1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~--GT~N~li~f~~~YlEli~i~-~~---~~--------~~~~~~~   66 (175)
T PF13468_consen    1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGW--GTANALIPFGDGYLELIAID-PE---AP--------APDRGRW   66 (175)
T ss_dssp             EEEEEEE-TTGGG----GGGS--S--EEEEE-TTT---EEEEEEE-SSSEEEEEEES--H---HH--------STGGGT-
T ss_pred             CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCCCC--ccEEEEEeeCCceEEEEEeC-Cc---cc--------ccccccc
Confidence            79999999999999999988999998875433331  13344444455588888852 21   00        0000000


Q ss_pred             HHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCc-eEEEEEEecCCeEEEEeeccCcCCC-CCCCCC
Q 013898          113 ACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNL-AVIAEVQLYGDVVLRYVSYKDKANH-LDFLPG  190 (434)
Q Consensus       113 ~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~-~~~~~i~~~Gg~~~~fvd~~~~~~~-g~~~p~  190 (434)
                      ...+.+ .+++|+..+||+++|+++..+++.+.|.. ...+...++. +.+..+         +..  ++... +..+|-
T Consensus        67 ~~~~~~-~~~~g~~~~~l~t~d~~~~~~~l~~~G~~-~~~r~~~dG~~~~w~~~---------~~~--~~~~p~~~~~Pf  133 (175)
T PF13468_consen   67 FGLDRL-AGGEGLYGWALRTDDIEAVAARLRAAGLD-AGSRVRPDGGDLRWRLA---------FPE--DGALPFGGLLPF  133 (175)
T ss_dssp             TTTHHH-HT--EEEEEEEE-S-HHHHHHHHHTTT-E-EEEEEEEEE-EEEEEEE---------EEE---SS---SS---E
T ss_pred             eechhh-cCCCCeEEEEEecCCHHHHHHHHHhcCCC-CCCcCcCCCCcceEEEE---------EeC--CcccccCCCCcE
Confidence            001112 36789999999999999999999999976 1112222111 111111         111  11000 112333


Q ss_pred             CccCCCCCC--CCcccceeeeeeeeEecCCHHHHHHHHHHhh
Q 013898          191 FEPTDEISS--FPLDYGIRRLDHAVGNVPELAPAVAYVKSFT  230 (434)
Q Consensus       191 f~~~~~~~~--~~~~~~l~~iDHv~i~V~dl~~~~~fY~~vL  230 (434)
                      |-.+.....  ...+.+..+|++|.+.++|.+++.++|.++|
T Consensus       134 ~i~~~~~~~~~~~h~ng~~~i~~v~i~~~d~~~~~~~~~~l~  175 (175)
T PF13468_consen  134 FIQWETPHPEWARHPNGALGITRVVIAVPDPDAAAARYARLL  175 (175)
T ss_dssp             EEEESS-CCHHTTT--TTEEEEEEEEEETTHHHHHHHHHHH-
T ss_pred             EEEeCCCCcccccCCCccceEEEEEEEeCCHHHHHHHHHhhC
Confidence            322211100  1234568999999999999999999999875

>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin

Probab=98.78  E-value=1.2e-07  Score=78.94  Aligned_cols=83  Identities=16%  Similarity=0.133  Sum_probs=60.0

Q ss_pred             EEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCChhHH
Q 013898           35 HVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHAAC  114 (434)
Q Consensus        35 HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (434)
                      ||++.|+|++++.+||++.|||+...+.+        ....++.++..+.+......                       
T Consensus         1 Hv~l~v~d~~~s~~Fy~~~lg~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~-----------------------   49 (113)
T cd08345           1 HITLIVKDLNKSIAFYRDILGAELIYSSS--------KEAYFELAGLWICLMEEDSL-----------------------   49 (113)
T ss_pred             CeeEEECCHHHHHHHHHHhcCCeeeeccC--------ceeEEEecCeEEEeccCCCc-----------------------
Confidence            89999999999999999999999876532        12234556666666432110                       


Q ss_pred             hHHHHhcCCceeEEEEEe--cCHHHHHHHHHHcCCCCCCC
Q 013898          115 RSFAASHGLAARSIAVEV--EDADVAFNTSVAHGAKPSSP  152 (434)
Q Consensus       115 ~~~l~~hG~gv~~Iaf~V--~Dvd~a~~ra~~~Ga~~~~~  152 (434)
                          ...+.+..|+||.|  +|++++++++.++|+++...
T Consensus        50 ----~~~~~~~~hiaf~v~~~d~~~~~~~l~~~G~~~~~~   85 (113)
T cd08345          50 ----QGPERTYTHIAFQIQSEEFDEYTERLKALGVEMKPE   85 (113)
T ss_pred             ----CCCCCCccEEEEEcCHHHHHHHHHHHHHcCCccCCC
Confidence                01123567999999  47999999999999987543

This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.

>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain

Probab=98.78  E-value=1.3e-07  Score=79.15  Aligned_cols=84  Identities=19%  Similarity=0.249  Sum_probs=62.0

Q ss_pred             ceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeC---CEEEEEEcCCCCCCCcccccCCCCCCCC
Q 013898           31 NRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSG---DLRFVFTAPYSPSISDAADAGNSSASLP  107 (434)
Q Consensus        31 ~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G---~i~~vl~~p~~~~~~~~~~~~~~~~~~~  107 (434)
                      ++++||.|.|+|++++.+||++.|||++....+        ....++.+   ...+.+...                   
T Consensus         1 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~-------------------   53 (117)
T cd07240           1 RRIAYAELEVPDLERALEFYTDVLGLTVLDRDA--------GSVYLRCSEDDHHSLVLTEG-------------------   53 (117)
T ss_pred             CceeEEEEecCCHHHHHHHHHhccCcEEEeecC--------CeEEEecCCCCcEEEEEEeC-------------------
Confidence            479999999999999999999999999886632        12344443   233333220                   


Q ss_pred             CCChhHHhHHHHhcCCceeEEEEEec---CHHHHHHHHHHcCCCCCCCCc
Q 013898          108 TFDHAACRSFAASHGLAARSIAVEVE---DADVAFNTSVAHGAKPSSPPV  154 (434)
Q Consensus       108 ~~~~~~~~~~l~~hG~gv~~Iaf~V~---Dvd~a~~ra~~~Ga~~~~~p~  154 (434)
                                   ...++.|+||.|+   |++++.++++++|+++...|.
T Consensus        54 -------------~~~~~~h~~~~v~~~~~v~~~~~~l~~~g~~~~~~~~   90 (117)
T cd07240          54 -------------DEPGVDALGFEVASEEDLEALAAHLEAAGVAPEEASD   90 (117)
T ss_pred             -------------CCCCceeEEEEcCCHHHHHHHHHHHHHcCCceEEcCc
Confidence                         1136679999998   689999999999998766554

This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa

>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive

Probab=98.77  E-value=1.8e-07  Score=79.59  Aligned_cols=86  Identities=17%  Similarity=0.167  Sum_probs=62.4

Q ss_pred             eEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCCh
Q 013898           32 RFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDH  111 (434)
Q Consensus        32 ~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~  111 (434)
                      +|+||.|.|+|++++.+||+++|||++....+        ....+..++..+.+......                    
T Consensus         1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~--------------------   52 (121)
T cd07244           1 GINHITLAVSDLERSVAFYVDLLGFKLHVRWD--------KGAYLEAGDLWLCLSVDANV--------------------   52 (121)
T ss_pred             CcceEEEEECCHHHHHHHHHHhcCCEEEEecC--------CceEEecCCEEEEEecCCCC--------------------
Confidence            58999999999999999999999999876532        12334556665554321100                    


Q ss_pred             hHHhHHHHhcCCceeEEEEEe--cCHHHHHHHHHHcCCCCCCCC
Q 013898          112 AACRSFAASHGLAARSIAVEV--EDADVAFNTSVAHGAKPSSPP  153 (434)
Q Consensus       112 ~~~~~~l~~hG~gv~~Iaf~V--~Dvd~a~~ra~~~Ga~~~~~p  153 (434)
                              ....+..|+||+|  +|+++++++++++|++++.++
T Consensus        53 --------~~~~~~~hi~f~v~~~dl~~~~~~l~~~G~~~~~~~   88 (121)
T cd07244          53 --------GPAKDYTHYAFSVSEEDFASLKEKLRQAGVKEWKEN   88 (121)
T ss_pred             --------CCCCCeeeEEEEeCHHHHHHHHHHHHHcCCcccCCC
Confidence                    0123567899998  579999999999999876544

This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.

>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp

Probab=98.76  E-value=2.9e-07  Score=80.02  Aligned_cols=109  Identities=16%  Similarity=0.116  Sum_probs=69.8

Q ss_pred             ceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeC--C--EEEEEEcCCCCCCCcccccCCCCCCC
Q 013898           31 NRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSG--D--LRFVFTAPYSPSISDAADAGNSSASL  106 (434)
Q Consensus        31 ~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G--~--i~~vl~~p~~~~~~~~~~~~~~~~~~  106 (434)
                      .+++||.|.|+|++++.+||++.|||+++.+..  .     ....++.+  +  ..+.+....                 
T Consensus         2 ~~l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~--~-----~~~~~~~~~~~~~~~i~l~~~~-----------------   57 (134)
T cd08360           2 RRLGHVVLFVPDVEAAEAFYRDRLGFRVSDRFK--G-----RGAFLRAAGGGDHHNLFLIKTP-----------------   57 (134)
T ss_pred             ceeeEEEEEcCCHHHHHHHHHHhcCCEEEEEec--C-----cEEEEECCCCCCCcEEEEecCC-----------------
Confidence            579999999999999999999999999876532  1     12334432  1  234443210                 


Q ss_pred             CCCChhHHhHHHHhcCCceeEEEEEecCHHHHH---HHHHHcCCCCCCCCcccc-CceEEEEEEecCCeEEEEe
Q 013898          107 PTFDHAACRSFAASHGLAARSIAVEVEDADVAF---NTSVAHGAKPSSPPVILD-NLAVIAEVQLYGDVVLRYV  176 (434)
Q Consensus       107 ~~~~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~---~ra~~~Ga~~~~~p~~~~-~~~~~~~i~~~Gg~~~~fv  176 (434)
                                   ....|+.||||+|+|++++.   +++.++|+++...|.... +.....-++.++|..++|.
T Consensus        58 -------------~~~~g~~hiaf~v~d~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~y~~DP~G~~iEl~  118 (134)
T cd08360          58 -------------APMAGFHHAAFEVGDIDEVMLGGNHMLRAGYQTGWGPGRHRIGSNYFWYFRDPWGGEVEYG  118 (134)
T ss_pred             -------------CCCCcceEEEEEeCCHHHHHHHHHHHHHcCCccccCCCCcCCCccEEEEEECCCCCEEEEE
Confidence                         01357889999999987776   599999998765553221 1111223445555555544

NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.

>PRK10291 glyoxalase I; Provisional

Probab=98.76  E-value=3.3e-07  Score=78.91  Aligned_cols=114  Identities=17%  Similarity=0.150  Sum_probs=73.4

Q ss_pred             EEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCC----EEEEEEcCCCCCCCcccccCCCCCCCCCCChhH
Q 013898           38 FWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGD----LRFVFTAPYSPSISDAADAGNSSASLPTFDHAA  113 (434)
Q Consensus        38 ~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~----i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~  113 (434)
                      +.|+|++++++||+++|||+.+.....+..  ......+..++    ..+.+.....                       
T Consensus         2 l~V~Dle~s~~FY~~~LG~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------   56 (129)
T PRK10291          2 LRVGDLQRSIDFYTNVLGMKLLRTSENPEY--KYSLAFVGYGPETEEAVIELTYNWG-----------------------   56 (129)
T ss_pred             EEecCHHHHHHHHHhccCCEEEEeecCCCC--cEEEEEEccCCCCCcceEEeeecCC-----------------------
Confidence            689999999999999999998765432221  12333333332    1223321100                       


Q ss_pred             HhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCcccc-CceEEEEEEecCCeEEEEeec
Q 013898          114 CRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILD-NLAVIAEVQLYGDVVLRYVSY  178 (434)
Q Consensus       114 ~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~-~~~~~~~i~~~Gg~~~~fvd~  178 (434)
                      ...+  ..|.+..|+||+|+|+++++++++++|+++...|.... +...++.|+.+.|..+.|++.
T Consensus        57 ~~~~--~~g~~~~hlaf~V~d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~  120 (129)
T PRK10291         57 VDKY--ELGTAYGHIALSVDNAAEACEKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEE  120 (129)
T ss_pred             CCCC--cCCCCeeEEEEEeCCHHHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEEc
Confidence            0010  13457889999999999999999999998876553221 223445567777778888774

>PRK06724 hypothetical protein; Provisional

Probab=98.75  E-value=1.6e-07  Score=81.47  Aligned_cols=87  Identities=16%  Similarity=0.242  Sum_probs=61.4

Q ss_pred             cceEEEEEEEeCCHHHHHHHHHHhc---CCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCC
Q 013898           30 VNRFHHVEFWCTDATNTARRFSWGL---GMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASL  106 (434)
Q Consensus        30 i~~l~HI~~~V~da~~a~~fy~~~l---Gf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~  106 (434)
                      ..+++||+|.|+|++++++||++.|   ||+....            ..+..|+..+.|..+...               
T Consensus         5 ~~~i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~~~~------------~~~~~g~~~l~l~~~~~~---------------   57 (128)
T PRK06724          5 RAGIHHIEFWVANLEESISFYDMLFSIIGWRKLNE------------VAYSTGESEIYFKEVDEE---------------   57 (128)
T ss_pred             CcccCEEEEEeCCHHHHHHHHHHHHhhCCcEEeee------------EeeeCCCeeEEEecCCcc---------------
Confidence            5689999999999999999999966   6664321            113345555555432100               


Q ss_pred             CCCChhHHhHHHHhcCCceeEEEEEe---cCHHHHHHHHHHcCCCCCCCCcc
Q 013898          107 PTFDHAACRSFAASHGLAARSIAVEV---EDADVAFNTSVAHGAKPSSPPVI  155 (434)
Q Consensus       107 ~~~~~~~~~~~l~~hG~gv~~Iaf~V---~Dvd~a~~ra~~~Ga~~~~~p~~  155 (434)
                                 + ....|..|+||+|   +|++++++++.++|++++.+|..
T Consensus        58 -----------~-~~~~g~~h~af~v~~~~dvd~~~~~l~~~G~~~~~~p~~   97 (128)
T PRK06724         58 -----------I-VRTLGPRHICYQAINRKVVDEVAEFLSSTKIKIIRGPME   97 (128)
T ss_pred             -----------c-cCCCCceeEEEecCChHHHHHHHHHHHHCCCEEecCCcc
Confidence                       0 0124678999998   68999999999999987766643

>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins

Probab=98.74  E-value=1.9e-07  Score=78.76  Aligned_cols=86  Identities=21%  Similarity=0.235  Sum_probs=60.5

Q ss_pred             cceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCE-EEEEEcCCCCCCCcccccCCCCCCCCC
Q 013898           30 VNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDL-RFVFTAPYSPSISDAADAGNSSASLPT  108 (434)
Q Consensus        30 i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i-~~vl~~p~~~~~~~~~~~~~~~~~~~~  108 (434)
                      +.+|+||+|+|+|++++.+||++.|||+.....+        ....++.++. ..++.....                  
T Consensus         1 ~~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~------------------   54 (120)
T cd08362           1 VTALRGVGLGVPDLAAAAAFYREVWGLSVVAEDD--------GIVYLRATGSEHHILRLRRS------------------   54 (120)
T ss_pred             CceeeEEEEecCCHHHHHHHHHhCcCcEEEEecC--------CEEEEECCCCccEEEEeccC------------------
Confidence            4789999999999999999999999999876532        1233443322 222211100                  


Q ss_pred             CChhHHhHHHHhcCCceeEEEEEe---cCHHHHHHHHHHcCCCCCCCC
Q 013898          109 FDHAACRSFAASHGLAARSIAVEV---EDADVAFNTSVAHGAKPSSPP  153 (434)
Q Consensus       109 ~~~~~~~~~l~~hG~gv~~Iaf~V---~Dvd~a~~ra~~~Ga~~~~~p  153 (434)
                                  ..+++.+++|.|   +|+++++++++++|+++..+|
T Consensus        55 ------------~~~~~~~~~~~v~~~~~l~~~~~~l~~~G~~~~~~~   90 (120)
T cd08362          55 ------------DRNRLDVVSFSVASRADVDALARQVAARGGTVLSEP   90 (120)
T ss_pred             ------------CCCCCceEEEEeCCHHHHHHHHHHHHHcCCceecCC
Confidence                        012456899999   578999999999999876554

2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge

>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase

Probab=98.74  E-value=1.9e-07  Score=79.39  Aligned_cols=85  Identities=21%  Similarity=0.232  Sum_probs=60.3

Q ss_pred             cceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEe---CC-EEEEEEcCCCCCCCcccccCCCCCC
Q 013898           30 VNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRS---GD-LRFVFTAPYSPSISDAADAGNSSAS  105 (434)
Q Consensus        30 i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~---G~-i~~vl~~p~~~~~~~~~~~~~~~~~  105 (434)
                      +++++||+|.|+|++++.+||++.|||++.....  .+     ...++.   ++ ..+.+..                  
T Consensus         2 ~~~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~--~~-----~~~~~~~~~~~~~~~~l~~------------------   56 (122)
T cd07265           2 VLRPGHVQLRVLDLEEAIKHYREVLGLDEVGRDD--QG-----RVYLKAWDEFDHHSIVLRE------------------   56 (122)
T ss_pred             cceEeEEEEEeCCHHHHHHHHHhccCCEeeeecC--Cc-----eEEEEccCCCcccEEEecc------------------
Confidence            6899999999999999999999999999875531  11     122222   11 2222211                  


Q ss_pred             CCCCChhHHhHHHHhcCCceeEEEEEec---CHHHHHHHHHHcCCCCCCCC
Q 013898          106 LPTFDHAACRSFAASHGLAARSIAVEVE---DADVAFNTSVAHGAKPSSPP  153 (434)
Q Consensus       106 ~~~~~~~~~~~~l~~hG~gv~~Iaf~V~---Dvd~a~~ra~~~Ga~~~~~p  153 (434)
                                    ....++.|+||+|.   |++++++++.++|+++...|
T Consensus        57 --------------~~~~~~~hiaf~v~~~~dv~~~~~~l~~~G~~~~~~~   93 (122)
T cd07265          57 --------------ADTAGLDFMGFKVLDDADLEKLEARLQAYGVAVERIP   93 (122)
T ss_pred             --------------CCCCCeeEEEEEeCCHHHHHHHHHHHHHCCCcEEEcc
Confidence                          01236779999997   78999999999999865444

This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do

>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=98.74  E-value=1e-07  Score=80.33  Aligned_cols=115  Identities=18%  Similarity=0.191  Sum_probs=73.4

Q ss_pred             eeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcCCCC
Q 013898          211 HAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAG  290 (434)
Q Consensus       211 Hv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G~G  290 (434)
                      +..+.|+|++++.+||+++|||+......          .. ..+..+++.+.|.+..+..    ... ........+.|
T Consensus         4 ~~~l~v~D~~~s~~FY~~~lG~~~~~~~~----------~~-~~~~~~~~~~~l~l~~~~~----~~~-~~~~~~~~~~~   67 (119)
T cd08359           4 YPVIVTDDLAETADFYVRHFGFTVVFDSD----------WY-VSLRSPDGGVELAFMLPGH----ETV-PAAQYQFQGQG   67 (119)
T ss_pred             eeEEEECCHHHHHHHHHHhhCcEEEeccC----------cE-EEEecCCCceEEEEccCCC----CCC-cchhcccCCce
Confidence            56789999999999999999999875411          11 1223333336666654321    110 00111223455


Q ss_pred             ceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEEEE
Q 013898          291 VQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIF  366 (434)
Q Consensus       291 vqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llqif  366 (434)
                      + |++|.|+||++++++|+++    |++++..| ...        +           .....++-+|++|++++++
T Consensus        68 ~-~~~~~v~did~~~~~l~~~----G~~~~~~~-~~~--------~-----------~g~~~~~~~DP~G~~ie~~  118 (119)
T cd08359          68 L-ILNFEVDDVDAEYERLKAE----GLPIVLPL-RDE--------P-----------WGQRHFIVRDPNGVLIDIV  118 (119)
T ss_pred             E-EEEEEECCHHHHHHHHHhc----CCCeeecc-ccC--------C-----------CcceEEEEECCCCCEEEEE
Confidence            6 8999999999999999999    99887543 321        0           0112445688899988875

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.

>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins

Probab=98.74  E-value=2.8e-07  Score=78.64  Aligned_cols=87  Identities=16%  Similarity=0.174  Sum_probs=60.6

Q ss_pred             cceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCC
Q 013898           30 VNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTF  109 (434)
Q Consensus        30 i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~  109 (434)
                      .++++||.|.|+|++++++||++.|||+.....+    .  . ..+.-.++..+.+..+.                    
T Consensus         2 ~~~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~----~--~-~~~~~~~~~~l~~~~~~--------------------   54 (123)
T cd08351           2 TVTLNHTIVPARDREASAEFYAEILGLPWAKPFG----P--F-AVVKLDNGVSLDFAQPD--------------------   54 (123)
T ss_pred             cceEeEEEEEcCCHHHHHHHHHHhcCCEeeeccC----C--E-EEEEcCCCcEEEEecCC--------------------
Confidence            3679999999999999999999999999876321    0  1 11111233444443310                    


Q ss_pred             ChhHHhHHHHhcCCceeEEEEEec--CHHHHHHHHHHcCCCCCCCCc
Q 013898          110 DHAACRSFAASHGLAARSIAVEVE--DADVAFNTSVAHGAKPSSPPV  154 (434)
Q Consensus       110 ~~~~~~~~l~~hG~gv~~Iaf~V~--Dvd~a~~ra~~~Ga~~~~~p~  154 (434)
                                 ...+..|+||.|+  |+++++++++++|+++...|.
T Consensus        55 -----------~~~~~~h~a~~v~~~dl~~~~~~l~~~G~~~~~~~~   90 (123)
T cd08351          55 -----------GEIPPQHYAFLVSEEEFDRIFARIRERGIDYWADPQ   90 (123)
T ss_pred             -----------CCCCcceEEEEeCHHHHHHHHHHHHHcCCceecCCc
Confidence                       1123458899886  699999999999998766654

ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.

>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase

Probab=98.73  E-value=2.7e-07  Score=77.65  Aligned_cols=84  Identities=20%  Similarity=0.248  Sum_probs=59.3

Q ss_pred             cceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEe-CCEEEEEEcCCCCCCCcccccCCCCCCCCC
Q 013898           30 VNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRS-GDLRFVFTAPYSPSISDAADAGNSSASLPT  108 (434)
Q Consensus        30 i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~-G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~  108 (434)
                      |.+++||.+.|+|++++.+||++ |||+...+..  .      ...++. |+..+++.-..                   
T Consensus         1 ~~~l~hv~l~v~Dl~~s~~FY~~-lGl~~~~~~~--~------~~~~~~~~~~~~~~~~~~-------------------   52 (113)
T cd07267           1 LTDIAHVRFEHPDLDKAERFLTD-FGLEVAARTD--D------ELYYRGYGTDPFVYVARK-------------------   52 (113)
T ss_pred             CcEEEEEEEccCCHHHHHHHHHH-cCCEEEEecC--C------eEEEecCCCccEEEEccc-------------------
Confidence            57899999999999999999998 9999876532  1      223443 33323322100                   


Q ss_pred             CChhHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCC
Q 013898          109 FDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSP  152 (434)
Q Consensus       109 ~~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~  152 (434)
                                 ....++.++||.|+|.++..+.+.+.|+..+..
T Consensus        53 -----------~~~~~~~~~af~v~~~~~~~~~~~~~g~~~~~~   85 (113)
T cd07267          53 -----------GEKARFVGAAFEAASRADLEKAAALPGASVIDD   85 (113)
T ss_pred             -----------CCcCcccEEEEEECCHHHHHHHHHcCCCeeecC
Confidence                       012366789999999999999999999876543

This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.

>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]

Probab=98.73  E-value=6.1e-08  Score=95.38  Aligned_cols=116  Identities=15%  Similarity=0.118  Sum_probs=90.7

Q ss_pred             CCCCCCCCcceEEEEEEEeC--CHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEe--CCEEEEEEcCCCCCCCccc
Q 013898           22 NPKSDRFRVNRFHHVEFWCT--DATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRS--GDLRFVFTAPYSPSISDAA   97 (434)
Q Consensus        22 ~~~~~~~~i~~l~HI~~~V~--da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~--G~i~~vl~~p~~~~~~~~~   97 (434)
                      ++.+....+..||||...|.  ..+.|+.||++.|||+...+-++++--....|-++.+  |.++|-||++.+.      
T Consensus       157 ~~~~~~~g~~~IDHl~~nv~~~~md~w~~FY~~if~~~~~~~fdi~~p~tgl~Sram~Sp~G~vrlplN~s~~~------  230 (363)
T COG3185         157 QGASGGVGLTAIDHLTHNVKAGQMDTWVLFYESLFGFREIQYFDIPGPITGLRSRAMVSPCGKVRLPLNESADD------  230 (363)
T ss_pred             cccccccCceeechhhhhcchhhHHHHHHHHHHHhCccceeeEeccCCcccEEEeeEecCCCcEEeecccCCCc------
Confidence            44445556789999998876  6679999999999999998776554322245544444  8899999886543      


Q ss_pred             ccCCCCCCCCCCChhHHhHHHHh-cCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccc
Q 013898           98 DAGNSSASLPTFDHAACRSFAAS-HGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVIL  156 (434)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~l~~-hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~  156 (434)
                                   .+++.+|+.. ||.||.||||.++|+-++.++++++|++.+..|.+.
T Consensus       231 -------------~sqi~efl~~y~G~GIQHIA~~T~dI~~tv~~lr~rG~~fl~ip~tY  277 (363)
T COG3185         231 -------------KSQIGEFLREYRGEGIQHIAFGTDDIYATVAALRERGVKFLPIPETY  277 (363)
T ss_pred             -------------hhHHHHHHHHhCCCcceEEEecccHHHHHHHHHHHcCCccCCCchhH
Confidence                         2578899854 688999999999999999999999999988767654

>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=98.73  E-value=4.2e-07  Score=78.89  Aligned_cols=115  Identities=13%  Similarity=0.128  Sum_probs=72.7

Q ss_pred             eeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCc-----ccccCceEEE-EEc--CCCceEEEecccCCCCCCCchH
Q 013898          208 RLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVG-----TSESGLNSVV-LAN--NDEMVLLPMNEPVFGTKRKSQI  279 (434)
Q Consensus       208 ~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~-----~~~~g~~s~~-l~~--~~g~v~i~L~e~~~g~~~~s~i  279 (434)
                      ++.|+++.|.|++++++||+++|||+..++.+.++..     ..+.|-.+.+ +..  ......++|.....   ..   
T Consensus         2 ~~~Hv~irV~DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~lEL~~n~~---~~---   75 (127)
T cd08358           2 RALHFVFKVGNRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGYGPEDDHFVVELTYNYG---IG---   75 (127)
T ss_pred             ceEEEEEEeCCHHHHHHHHHHhcCCEEEeeecCccccccccccCCCCcEEEEEEecCCCCCccEEEeEecCC---CC---
Confidence            6789999999999999999999999987765432210     1111222222 221  22344566654321   11   


Q ss_pred             HHHHhhcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCC
Q 013898          280 QTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQ  359 (434)
Q Consensus       280 ~~fl~~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~  359 (434)
                       .   ...|.|  |+||+++|+ ++.++|++.    |+++...| .                         +++.=.|++
T Consensus        76 -~---~~~g~~--~~hlav~~~-d~~~~l~~~----Gv~~~~~~-~-------------------------~~~fi~DPD  118 (127)
T cd08358          76 -D---YELGND--FLGITIHSK-QAVSNAKKH----NWPVTEVE-D-------------------------GVYEVKAPG  118 (127)
T ss_pred             -C---CCCCCC--EEEEEEECH-HHHHHHHHC----CCceecCC-C-------------------------CEEEEECCC
Confidence             0   123445  788888888 666999999    99877643 1                         255667888


Q ss_pred             ceEEEE
Q 013898          360 GTLLQI  365 (434)
Q Consensus       360 g~llqi  365 (434)
                      |+-+.+
T Consensus       119 G~~ie~  124 (127)
T cd08358         119 GYKFYL  124 (127)
T ss_pred             CCEEEE
Confidence            887765

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.

>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain

Probab=98.72  E-value=3.8e-07  Score=78.76  Aligned_cols=111  Identities=19%  Similarity=0.164  Sum_probs=74.8

Q ss_pred             EEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCE--EEEEEcCCCCCCCcccccCCCCCCCCCCCh
Q 013898           34 HHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDL--RFVFTAPYSPSISDAADAGNSSASLPTFDH  111 (434)
Q Consensus        34 ~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i--~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~  111 (434)
                      +||.|.|+|++++.+||++.|||++....+.+ +  ....+.++.++.  .+.+..                        
T Consensus         1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~-~--~~~~~~~~~~~~~~~l~~~~------------------------   53 (131)
T cd08343           1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDP-G--VDAAAFLRCDEDHHDLALFP------------------------   53 (131)
T ss_pred             CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccC-C--ceeEEEEEcCCCcceEEEEc------------------------
Confidence            59999999999999999999999987664422 1  112334444332  232221                        


Q ss_pred             hHHhHHHHhcCCceeEEEEEecCHH---HHHHHHHHcCCCCCCCCcccc-CceEEEEEEecCCeEEEEeec
Q 013898          112 AACRSFAASHGLAARSIAVEVEDAD---VAFNTSVAHGAKPSSPPVILD-NLAVIAEVQLYGDVVLRYVSY  178 (434)
Q Consensus       112 ~~~~~~l~~hG~gv~~Iaf~V~Dvd---~a~~ra~~~Ga~~~~~p~~~~-~~~~~~~i~~~Gg~~~~fvd~  178 (434)
                             ..+..++.+++|.|+|++   +++++++++|++++.+|.... +......++.+.|..+.|+..
T Consensus        54 -------~~~~~~~~hl~~~v~d~~~~~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~~DPdG~~iei~~~  117 (131)
T cd08343          54 -------GPERPGLHHVAFEVESLDDILRAADRLAANGIQIEFGPGRHGPGNNLFLYFRDPDGNRVELSAE  117 (131)
T ss_pred             -------CCCCCCeeEEEEEcCCHHHHHHHHHHHHHcCCeeEECCCccCCCCcEEEEEECCCCCEEEEEcC
Confidence                   012457889999999874   788999999998876654321 123345567777777777763

This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are

>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=98.70  E-value=2.2e-07  Score=78.78  Aligned_cols=108  Identities=14%  Similarity=0.141  Sum_probs=66.3

Q ss_pred             ceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCC
Q 013898           31 NRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFD  110 (434)
Q Consensus        31 ~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~  110 (434)
                      +++.|+.++|.|++++++||++.|||++....+  .      ...+ .++..+.+.......             .  . 
T Consensus         1 ~~~~~~~l~v~D~~~a~~FY~~~lG~~~~~~~~--~------~~~~-~~~~~l~~~~~~~~~-------------~--~-   55 (120)
T cd09011           1 MKFKNPLLVVKDIEKSKKFYEKVLGLKVVMDFG--E------NVTF-EGGFALQEGYSWLEG-------------I--S-   55 (120)
T ss_pred             CEEEEEEEEECCHHHHHHHHHHhcCCEEeeccC--c------eEEE-eccceeccchhhhcc-------------C--C-
Confidence            468999999999999999999999999764321  0      1122 233333221100000             0  0 


Q ss_pred             hhHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCC-CCCCCCccccCceEEEEEEecCCeEEEEeec
Q 013898          111 HAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGA-KPSSPPVILDNLAVIAEVQLYGDVVLRYVSY  178 (434)
Q Consensus       111 ~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga-~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd~  178 (434)
                      ...     ...+.+-.+++|.|+|+++++++++++|+ +++.+|...          +||...++|.||
T Consensus        56 ~~~-----~~~~~~~~~l~~~v~dvd~~~~~l~~~g~~~~~~~~~~~----------~~g~r~~~~~DP  109 (120)
T cd09011          56 KAD-----IIEKSNNFELYFEEEDFDAFLDKLKRYDNIEYVHPIKEH----------PWGQRVVRFYDP  109 (120)
T ss_pred             ccc-----ccccCCceEEEEEehhhHHHHHHHHhcCCcEEecCcccC----------CCccEEEEEECC
Confidence            000     01123346899999999999999999986 566666543          345555666653

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.

>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=98.70  E-value=2.2e-07  Score=78.54  Aligned_cols=111  Identities=17%  Similarity=0.224  Sum_probs=74.2

Q ss_pred             eeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcCCCC
Q 013898          211 HAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAG  290 (434)
Q Consensus       211 Hv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G~G  290 (434)
                      |+.+.|+|++++.+||+++|||+......    .     ...+..  .+..+.+.+..+..    .          ...|
T Consensus         4 hv~l~v~d~~~a~~FY~~~lG~~~~~~~~----~-----~~~~~~--~~~~~~~~~~~~~~----~----------~~~~   58 (120)
T cd07254           4 HVALNVDDLEASIAFYSKLFGVEPTKVRD----D-----YAKFLL--EDPRLNFVLNERPG----A----------PGGG   58 (120)
T ss_pred             EEEEEeCCHHHHHHHHHHHhCCeEecccC----C-----eeEEEe--cCCceEEEEecCCC----C----------CCCC
Confidence            99999999999999999999998754321    0     112222  22345555544321    0          1157


Q ss_pred             ceEEEEEeCC---HHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEEEEc
Q 013898          291 VQHLALVSED---IFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFT  367 (434)
Q Consensus       291 vqHIAf~vdD---I~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llqifT  367 (434)
                      ++|+||.|+|   +++..++|+++    |+++...| ..-+.      .           .....+|-+|++|..+.+++
T Consensus        59 ~~h~~f~v~~~~dl~~~~~~l~~~----G~~~~~~~-~~~~~------~-----------~~~~~~~~~DP~G~~ie~~~  116 (120)
T cd07254          59 LNHLGVQVDSAEEVAEAKARAEAA----GLPTFKEE-DTTCC------Y-----------AVQDKVWVTDPDGNAWEVFV  116 (120)
T ss_pred             eeEEEEEeCCHHHHHHHHHHHHHc----CCeEEccC-Ccccc------c-----------CCcceEEEECCCCCEEEEEE
Confidence            9999999998   78889999999    99988653 32110      0           01234677899999998886


Q ss_pred             c
Q 013898          368 K  368 (434)
Q Consensus       368 ~  368 (434)
                      +
T Consensus       117 ~  117 (120)
T cd07254         117 T  117 (120)
T ss_pred             e
Confidence            3

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.

>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin

Probab=98.69  E-value=1.7e-07  Score=78.15  Aligned_cols=110  Identities=16%  Similarity=0.183  Sum_probs=73.5

Q ss_pred             eeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcCCCC
Q 013898          211 HAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAG  290 (434)
Q Consensus       211 Hv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G~G  290 (434)
                      ||.+.|+|++++++||+++|||+.....+  .         ...+..+  ...+.+.....   ..        . .+.+
T Consensus         1 Hv~l~v~d~~~s~~Fy~~~lg~~~~~~~~--~---------~~~~~~~--~~~l~~~~~~~---~~--------~-~~~~   55 (113)
T cd08345           1 HITLIVKDLNKSIAFYRDILGAELIYSSS--K---------EAYFELA--GLWICLMEEDS---LQ--------G-PERT   55 (113)
T ss_pred             CeeEEECCHHHHHHHHHHhcCCeeeeccC--c---------eeEEEec--CeEEEeccCCC---cC--------C-CCCC
Confidence            89999999999999999999999865431  0         0111211  34555544321   01        1 2356


Q ss_pred             ceEEEEEe--CCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEEEEcc
Q 013898          291 VQHLALVS--EDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFTK  368 (434)
Q Consensus       291 vqHIAf~v--dDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llqifT~  368 (434)
                      ++|+||.|  +|+++.+++|+++    |+++...+ ..        ..           .....+|-+|++|+.+.|++-
T Consensus        56 ~~hiaf~v~~~d~~~~~~~l~~~----G~~~~~~~-~~--------~~-----------~~~~~~~~~DPdG~~iEi~~~  111 (113)
T cd08345          56 YTHIAFQIQSEEFDEYTERLKAL----GVEMKPER-PR--------VQ-----------GEGRSIYFYDPDGHLLELHAG  111 (113)
T ss_pred             ccEEEEEcCHHHHHHHHHHHHHc----CCccCCCc-cc--------cC-----------CCceEEEEECCCCCEEEEEeC
Confidence            89999999  4799999999999    99887432 11        00           011355778999999999864


Q ss_pred             c
Q 013898          369 P  369 (434)
Q Consensus       369 ~  369 (434)
                      .
T Consensus       112 ~  112 (113)
T cd08345         112 T  112 (113)
T ss_pred             c
Confidence            3

This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.

>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC)

Probab=98.68  E-value=3.2e-07  Score=78.66  Aligned_cols=84  Identities=15%  Similarity=0.171  Sum_probs=61.2

Q ss_pred             CcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCC--EEEEEEcCCCCCCCcccccCCCCCCC
Q 013898           29 RVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGD--LRFVFTAPYSPSISDAADAGNSSASL  106 (434)
Q Consensus        29 ~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~--i~~vl~~p~~~~~~~~~~~~~~~~~~  106 (434)
                      .+.++.||++.|+|++++.+||+++|||++..+.+        ....++.++  ..+++...                  
T Consensus         3 ~~~~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~~--------~~~~l~~~~~~~~i~l~~~------------------   56 (124)
T cd08361           3 ELQDIAYVRLGTRDLAGATRFATDILGLQVAERTA--------KATYFRSDARDHTLVYIEG------------------   56 (124)
T ss_pred             eEEEeeEEEEeeCCHHHHHHHHHhccCceeccCCC--------CeEEEEcCCccEEEEEEeC------------------
Confidence            57899999999999999999999999999875421        123344432  33443321                  


Q ss_pred             CCCChhHHhHHHHhcCCceeEEEEEecC---HHHHHHHHHHcCCCCCCCC
Q 013898          107 PTFDHAACRSFAASHGLAARSIAVEVED---ADVAFNTSVAHGAKPSSPP  153 (434)
Q Consensus       107 ~~~~~~~~~~~l~~hG~gv~~Iaf~V~D---vd~a~~ra~~~Ga~~~~~p  153 (434)
                                    . ++..++||+|+|   ++++++++.++|+++...+
T Consensus        57 --------------~-~~~~~iaf~v~~~~dv~~~~~~l~~~G~~~~~~~   91 (124)
T cd08361          57 --------------D-PAEQASGFELRDDDALESAATELEQYGHEVRRGT   91 (124)
T ss_pred             --------------C-CceEEEEEEECCHHHHHHHHHHHHHcCCceEEcC
Confidence                          0 234679999986   9999999999999865443

This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.

>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm

Probab=98.68  E-value=6.4e-07  Score=74.17  Aligned_cols=86  Identities=19%  Similarity=0.187  Sum_probs=62.4

Q ss_pred             EEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCChhHHhH
Q 013898           37 EFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHAACRS  116 (434)
Q Consensus        37 ~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (434)
                      .|.|+|++++++||++.|||+.....+  .    .....++.|+..+.|.......                   .    
T Consensus         3 ~i~v~d~~~s~~FY~~~lg~~~~~~~~--~----~~~~~~~~~~~~~~l~~~~~~~-------------------~----   53 (112)
T cd08349           3 VLPVSDIERSLAFYRDVLGFEVDWEHP--E----PGYAFLSRGGAQLMLSEHDGDE-------------------P----   53 (112)
T ss_pred             EEEECCHHHHHHHHHhccCeEEEEEcC--C----CcEEEEEeCCEEEEEeccCCCC-------------------C----
Confidence            689999999999999999999887643  1    1234556688888876532110                   0    


Q ss_pred             HHHhcCCceeEEEEEecCHHHHHHHHHHcCCC-CCCCCc
Q 013898          117 FAASHGLAARSIAVEVEDADVAFNTSVAHGAK-PSSPPV  154 (434)
Q Consensus       117 ~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~-~~~~p~  154 (434)
                         ....+..+++|.|+|++++++++.++|++ +..++.
T Consensus        54 ---~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~   89 (112)
T cd08349          54 ---VPLGRGGSVYIEVEDVDALYAELKAKGADLIVYPPE   89 (112)
T ss_pred             ---CCCCCcEEEEEEeCCHHHHHHHHHHcCCcceecCcc
Confidence               02334458999999999999999999998 444544

BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large

>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1

Probab=98.68  E-value=5.7e-07  Score=80.36  Aligned_cols=94  Identities=14%  Similarity=0.138  Sum_probs=62.8

Q ss_pred             cceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCC-ceeEEEEEEEeCC--EEEEEEcCCCCCCCcccccCCCCCCC
Q 013898           30 VNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTG-NTVHASYLLRSGD--LRFVFTAPYSPSISDAADAGNSSASL  106 (434)
Q Consensus        30 i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g-~~~~~~~~l~~G~--i~~vl~~p~~~~~~~~~~~~~~~~~~  106 (434)
                      .++++||.|.|+|++++.+||++.|||++..+...+.. .......+++.++  ..+.+..                   
T Consensus         7 ~~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~-------------------   67 (154)
T cd07237           7 DQGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNGRHHSLALAE-------------------   67 (154)
T ss_pred             CCccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCCCCCCEEEEc-------------------
Confidence            57899999999999999999999999998764321100 0011233344332  1122211                   


Q ss_pred             CCCChhHHhHHHHhcCCceeEEEEEecCHH---HHHHHHHHcCCCCCCCCc
Q 013898          107 PTFDHAACRSFAASHGLAARSIAVEVEDAD---VAFNTSVAHGAKPSSPPV  154 (434)
Q Consensus       107 ~~~~~~~~~~~l~~hG~gv~~Iaf~V~Dvd---~a~~ra~~~Ga~~~~~p~  154 (434)
                                  ...+.++.||||+|+|.+   +++++++++|+++...|.
T Consensus        68 ------------~~~~~g~~Hiaf~V~d~~~l~~~~~~L~~~G~~v~~~~~  106 (154)
T cd07237          68 ------------GPGPKRIHHLMLEVTSLDDVGRAYDRVRARGIPIAMTLG  106 (154)
T ss_pred             ------------CCCCceeEEEEEEcCCHHHHHHHHHHHHHcCCceeccCC
Confidence                        012357889999998754   689999999998766553

13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi

>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases

Probab=98.67  E-value=7.1e-07  Score=80.37  Aligned_cols=113  Identities=13%  Similarity=0.099  Sum_probs=69.5

Q ss_pred             ceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCC-E-EEEEEcCCCCCCCcccccCCCCCCCCC
Q 013898           31 NRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGD-L-RFVFTAPYSPSISDAADAGNSSASLPT  108 (434)
Q Consensus        31 ~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~-i-~~vl~~p~~~~~~~~~~~~~~~~~~~~  108 (434)
                      ++|+||.|.|+|++++.+||+++|||++..+...+.+  .....+++.++ . .+.+.                      
T Consensus         2 ~~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~~~~~~~~--~~~~~~l~~~~~~~~i~l~----------------------   57 (161)
T cd07256           2 QRLDHFNLRVPDVDAGLAYYRDELGFRVSEYTEDDDG--TTWAAWLHRKGGVHDTALT----------------------   57 (161)
T ss_pred             ceEEEEEEecCCHHHHHHHHHhccCCEEEEEeccCCC--cEEEEEEecCCCcceEEEe----------------------
Confidence            6899999999999999999999999998754321111  11122222221 1 11111                      


Q ss_pred             CChhHHhHHHHhcCCceeEEEEEecC---HHHHHHHHHHcCCCC-C-CCCcccc-CceEEEEEEecCCeEEEEee
Q 013898          109 FDHAACRSFAASHGLAARSIAVEVED---ADVAFNTSVAHGAKP-S-SPPVILD-NLAVIAEVQLYGDVVLRYVS  177 (434)
Q Consensus       109 ~~~~~~~~~l~~hG~gv~~Iaf~V~D---vd~a~~ra~~~Ga~~-~-~~p~~~~-~~~~~~~i~~~Gg~~~~fvd  177 (434)
                                ...+.++.|+||.|+|   +++++++|+++|+.. + ..|.... ......-++.++|..++++.
T Consensus        58 ----------~~~~~~~~Hiaf~v~~~~~v~~~~~~L~~~G~~~~~~~~p~~~g~~~~~~~y~~DPdG~~iEl~~  122 (161)
T cd07256          58 ----------GGNGPRLHHVAFWVPEPHNIIRTCDLLAAAGYSDRIERGPGRHGISNAFFLYLRDPDGHRIEIYT  122 (161)
T ss_pred             ----------cCCCCceeEEEEEcCCHHHHHHHHHHHHHcCCCcccccCCCccCCCCceEEEEECCCCCeEEEee
Confidence                      1234578899999986   788889999999863 2 2232110 11223345566666776664

This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of

>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=98.67  E-value=4.4e-07  Score=77.01  Aligned_cols=87  Identities=16%  Similarity=0.212  Sum_probs=62.6

Q ss_pred             ceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCC--EEEEEEcCCCCCCCcccccCCCCCCCCC
Q 013898           31 NRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGD--LRFVFTAPYSPSISDAADAGNSSASLPT  108 (434)
Q Consensus        31 ~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~--i~~vl~~p~~~~~~~~~~~~~~~~~~~~  108 (434)
                      ++|+||.++|+|++++++||++.|||++....+        ..+.+..++  ..|.+.......                
T Consensus         1 ~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~--------~~~~l~~~~~~~~l~l~~~~~~~----------------   56 (125)
T cd07255           1 TRIGAVTLRVADLERSLAFYQDVLGLEVLERTD--------STAVLGTGGKRPLLVLEEDPDAP----------------   56 (125)
T ss_pred             CEEEEEEEEECCHHHHHHHHHhccCcEEEEcCC--------CEEEEecCCCeEEEEEEeCCCCC----------------
Confidence            479999999999999999999999999986632        123445544  455554421100                


Q ss_pred             CChhHHhHHHHhcCCceeEEEEEec---CHHHHHHHHHHcCCCC
Q 013898          109 FDHAACRSFAASHGLAARSIAVEVE---DADVAFNTSVAHGAKP  149 (434)
Q Consensus       109 ~~~~~~~~~l~~hG~gv~~Iaf~V~---Dvd~a~~ra~~~Ga~~  149 (434)
                              ....+..++.|++|.|+   |++++++++.++|+++
T Consensus        57 --------~~~~~~~~~~hi~f~v~~~~~v~~~~~~l~~~g~~~   92 (125)
T cd07255          57 --------PAPPGATGLYHFAILLPSRADLAAALRRLIELGIPL   92 (125)
T ss_pred             --------cccCCCCcEEEEEEECCCHHHHHHHHHHHHHcCCce
Confidence                    00123357889999997   4899999999999975

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.

>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins

Probab=98.66  E-value=2.5e-07  Score=75.09  Aligned_cols=89  Identities=24%  Similarity=0.272  Sum_probs=66.5

Q ss_pred             eeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcCCCC
Q 013898          211 HAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAG  290 (434)
Q Consensus       211 Hv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G~G  290 (434)
                      |+++.|+|++++.+||+++|||+.......       .......+..  +...|.|..+..   ....       .++.+
T Consensus         1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~-------~~~~~~~~~~--~~~~i~l~~~~~---~~~~-------~~~~~   61 (112)
T cd06587           1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGN-------GGAEFAVLGL--GGTRLELFEGDE---PAPA-------PSGGG   61 (112)
T ss_pred             CcceeeCCHHHHHHHHHhccCCEEEEeecc-------CCEEEEEEec--CCceEEEecCCC---CCCc-------ccCCC
Confidence            899999999999999999999998766421       1122333333  257888877642   1111       24677


Q ss_pred             ceEEEEEeCCHHHHHHHHHHhcCCCCceeccC
Q 013898          291 VQHLALVSEDIFRTLREMRKRSGVGGFEFMPS  322 (434)
Q Consensus       291 vqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~  322 (434)
                      ++|++|.|+|+.+..++|++.    |+.+...
T Consensus        62 ~~~~~~~v~~~~~~~~~l~~~----g~~~~~~   89 (112)
T cd06587          62 GVHLAFEVDDVDAAYERLKAA----GVEVLGE   89 (112)
T ss_pred             eeEEEEECCCHHHHHHHHHHc----CCcccCC
Confidence            999999999999999999999    9988864

This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas

>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains

Probab=98.65  E-value=3.7e-07  Score=76.26  Aligned_cols=113  Identities=10%  Similarity=0.015  Sum_probs=73.6

Q ss_pred             eeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcCC
Q 013898          209 LDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEG  288 (434)
Q Consensus       209 iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G  288 (434)
                      ++|+++.|+|++++.+||+++|||+..+... +.     ..+  ..+..+ +...+.+.....   ..         ...
T Consensus         1 ~~hi~l~v~d~~~s~~FY~~~lG~~~~~~~~-~~-----~~~--~~~~~~-~~~~~~~~~~~~---~~---------~~~   59 (114)
T cd07247           1 PVWFELPTTDPERAKAFYGAVFGWTFEDMGD-GG-----GDY--AVFSTG-GGAVGGLMKAPE---PA---------AGS   59 (114)
T ss_pred             CEEEEeeCCCHHHHHHHHHhccCceeeeccC-CC-----Cce--EEEEeC-CccEEEEecCCC---CC---------CCC
Confidence            4799999999999999999999999865431 00     001  122222 222333332211   00         123


Q ss_pred             CCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEEEE
Q 013898          289 AGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIF  366 (434)
Q Consensus       289 ~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llqif  366 (434)
                      .+..|++|.|+||+++.++|++.    |++++.. |..+       .+            ....++-+|++|+.++++
T Consensus        60 ~~~~~~~f~v~di~~~~~~l~~~----g~~~~~~-~~~~-------~~------------~~~~~~~~DPdG~~~~l~  113 (114)
T cd07247          60 PPGWLVYFAVDDVDAAAARVEAA----GGKVLVP-PTDI-------PG------------VGRFAVFADPEGAVFGLW  113 (114)
T ss_pred             CCeEEEEEEeCCHHHHHHHHHHC----CCEEEeC-Cccc-------CC------------cEEEEEEECCCCCEEEeE
Confidence            45779999999999999999999    9998864 3331       00            012567788999988875

SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep

>cd07235 MRD Mitomycin C resistance protein (MRD)

Probab=98.64  E-value=3.4e-07  Score=77.57  Aligned_cols=97  Identities=15%  Similarity=0.154  Sum_probs=60.0

Q ss_pred             EEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCChh
Q 013898           33 FHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHA  112 (434)
Q Consensus        33 l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~  112 (434)
                      ++||.+.|+|.+++++||+ .|||+.......     .....+...++..+.+........            .  .+ .
T Consensus         1 ~~~i~l~V~D~~~a~~FY~-~LGf~~~~~~~~-----~~~~~~~~~~~~~l~l~~~~~~~~------------~--~~-~   59 (122)
T cd07235           1 LDAVGIVVADMAKSLDFYR-RLGFDFPEEADD-----EPHVEAVLPGGVRLAWDTVESIRS------------F--TP-G   59 (122)
T ss_pred             CceEEEEeccHHHHHHHHH-HhCceecCCcCC-----CCcEEEEeCCCEEEEEEcccceee------------e--cC-C
Confidence            5899999999999999997 599987643220     011222223467777654211100            0  00 0


Q ss_pred             HHhHHHHhcCCceeEEEEEec---CHHHHHHHHHHcCCCCCCCCcc
Q 013898          113 ACRSFAASHGLAARSIAVEVE---DADVAFNTSVAHGAKPSSPPVI  155 (434)
Q Consensus       113 ~~~~~l~~hG~gv~~Iaf~V~---Dvd~a~~ra~~~Ga~~~~~p~~  155 (434)
                           ....+.+-.+++|.|.   |+++++++++++|+++..+|..
T Consensus        60 -----~~~~~~~~~~l~~~~~~~~dvd~~~~~l~~~G~~~~~~~~~  100 (122)
T cd07235          60 -----WTPTGGHRIALAFLCETPAEVDALYAELVGAGYPGHKEPWD  100 (122)
T ss_pred             -----CCCCCCCcEEEEEEcCCHHHHHHHHHHHHHCCCCcCCCCcc
Confidence                 0011223457788764   8999999999999987776654

Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.

>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=98.64  E-value=2.7e-07  Score=77.74  Aligned_cols=120  Identities=18%  Similarity=0.183  Sum_probs=75.9

Q ss_pred             eeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcCC
Q 013898          209 LDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEG  288 (434)
Q Consensus       209 iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G  288 (434)
                      |-|+.+.|+|++++++||+++|||+......  +        ....+..+++ ..+.+..+..    .+.....+.....
T Consensus         1 ~~~~~l~v~d~~~s~~Fy~~~lG~~~~~~~~--~--------~~~~l~~~~~-~~~~l~~~~~----~~~~~~~~~~~~~   65 (122)
T cd08354           1 ILETALYVDDLEAAEAFYEDVLGLELMLKED--R--------RLAFFWVGGR-GMLLLFDPGA----TSTPGGEIPPHGG   65 (122)
T ss_pred             CeEEEEEeCCHHHHHHHHHhccCCEEeecCC--C--------ceEEEEcCCC-cEEEEEecCC----cccccCCCCCCCC
Confidence            3589999999999999999999999875311  1        0122333333 3344433321    1000111222234


Q ss_pred             CCceEEEEEe--CCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEEEE
Q 013898          289 AGVQHLALVS--EDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIF  366 (434)
Q Consensus       289 ~GvqHIAf~v--dDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llqif  366 (434)
                      .|++|+||.+  +|++++++++.++    |+++...+ ...       .+             ..-++-.|++|.+++++
T Consensus        66 ~~~~~~~~~v~~~dl~~~~~~l~~~----g~~~~~~~-~~~-------~~-------------~~~~~~~DP~G~~ie~~  120 (122)
T cd08354          66 SGPGHFAFAIPAEELAEWEAHLEAK----GVAIESEV-QWP-------RG-------------GRSLYFRDPDGNLLELA  120 (122)
T ss_pred             CCccEEEEEcCHHHHHHHHHHHHhc----CCceeccc-cCC-------CC-------------eeEEEEECCCCCEEEEe
Confidence            6799999999  5899999999999    99877532 210       01             11246788999999998


Q ss_pred             cc
Q 013898          367 TK  368 (434)
Q Consensus       367 T~  368 (434)
                      |+
T Consensus       121 ~~  122 (122)
T cd08354         121 TP  122 (122)
T ss_pred             cC
Confidence            74

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.

>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=98.63  E-value=1.3e-06  Score=75.84  Aligned_cols=112  Identities=14%  Similarity=0.195  Sum_probs=71.8

Q ss_pred             eEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCc---------eeEEEEEEE----eCCEEEEEEcCCCCCCCcccc
Q 013898           32 RFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGN---------TVHASYLLR----SGDLRFVFTAPYSPSISDAAD   98 (434)
Q Consensus        32 ~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~---------~~~~~~~l~----~G~i~~vl~~p~~~~~~~~~~   98 (434)
                      ++.|+.+.|+|++++++||+++|||+++.+...++++         .......+.    .++..++|+......      
T Consensus         2 ~~~Hv~irV~DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~lEL~~n~~~~------   75 (127)
T cd08358           2 RALHFVFKVGNRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGYGPEDDHFVVELTYNYGIG------   75 (127)
T ss_pred             ceEEEEEEeCCHHHHHHHHHHhcCCEEEeeecCccccccccccCCCCcEEEEEEecCCCCCccEEEeEecCCCC------
Confidence            6899999999999999999999999988765444321         011111121    123344454311100      


Q ss_pred             cCCCCCCCCCCChhHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEee
Q 013898           99 AGNSSASLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVS  177 (434)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd  177 (434)
                               .+          ..|.+  +++|.|++. ++.++++++|+++...|..      +..|++++|..++|+|
T Consensus        76 ---------~~----------~~g~~--~~hlav~~~-d~~~~l~~~Gv~~~~~~~~------~~fi~DPDG~~ie~~~  126 (127)
T cd08358          76 ---------DY----------ELGND--FLGITIHSK-QAVSNAKKHNWPVTEVEDG------VYEVKAPGGYKFYLID  126 (127)
T ss_pred             ---------CC----------CCCCC--EEEEEEECH-HHHHHHHHCCCceecCCCC------EEEEECCCCCEEEEec
Confidence                     00          12334  577777776 5669999999987654431      6778888888888876

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.

>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=98.61  E-value=1.1e-06  Score=74.56  Aligned_cols=90  Identities=17%  Similarity=0.241  Sum_probs=61.8

Q ss_pred             EEEEEEEeCCHHHHHHHHHHh---cCCcEEEEecCCCCceeEEEEEEEe--CCEEEEEEcCCCCCCCcccccCCCCCCCC
Q 013898           33 FHHVEFWCTDATNTARRFSWG---LGMPIVAKSDLSTGNTVHASYLLRS--GDLRFVFTAPYSPSISDAADAGNSSASLP  107 (434)
Q Consensus        33 l~HI~~~V~da~~a~~fy~~~---lGf~~v~~~~~~~g~~~~~~~~l~~--G~i~~vl~~p~~~~~~~~~~~~~~~~~~~  107 (434)
                      ++||.+.|+|++++++||+++   |||+.+.+..  .     ....+..  ++..+.+..+....               
T Consensus         1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~~--~-----~~~~~~~~~~~~~~~l~~~~~~~---------------   58 (123)
T cd07262           1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMEDG--P-----GAVGYGKGGGGPDFWVTKPFDGE---------------   58 (123)
T ss_pred             CcEEEEecCcHHHHHHHHHHHHhhcCceEEeecC--C-----ceeEeccCCCCceEEEeccccCC---------------
Confidence            589999999999999999998   6999876531  1     1122333  35666665432100               


Q ss_pred             CCChhHHhHHHHhcCCceeEEEEEecC---HHHHHHHHHHcCCCCCCCCcc
Q 013898          108 TFDHAACRSFAASHGLAARSIAVEVED---ADVAFNTSVAHGAKPSSPPVI  155 (434)
Q Consensus       108 ~~~~~~~~~~l~~hG~gv~~Iaf~V~D---vd~a~~ra~~~Ga~~~~~p~~  155 (434)
                                . ..+.+..||||.|+|   +++++++++++|+.+..+|..
T Consensus        59 ----------~-~~~~~~~hi~f~v~~~~~v~~~~~~~~~~g~~~~~~~~~   98 (123)
T cd07262          59 ----------P-ATAGNGTHVAFAAPSREAVDAFHAAALAAGGTDEGAPGL   98 (123)
T ss_pred             ----------C-CCCCCceEEEEECCCHHHHHHHHHHHHHcCCccCCCCCC
Confidence                      0 011234599999987   788999999999987766644

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.

>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase

Probab=98.61  E-value=4.1e-07  Score=89.57  Aligned_cols=108  Identities=16%  Similarity=0.156  Sum_probs=74.2

Q ss_pred             eeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcC-C-CceEEEecccCCCCCCCchHHHHH
Q 013898          206 IRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANN-D-EMVLLPMNEPVFGTKRKSQIQTYL  283 (434)
Q Consensus       206 l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~-~-g~v~i~L~e~~~g~~~~s~i~~fl  283 (434)
                      +++|+|+++.|+|++++.+||+++|||+......  +         ...+... . ....+.+...              
T Consensus         2 i~~i~hv~l~v~Dl~~s~~FY~~vLGl~~~~~~~--~---------~~~~~~~~~~~~~~l~l~~~--------------   56 (294)
T TIGR02295         2 ILRTGHVELRVTDLDKSREFYVDLLGFRETESDK--E---------YIYLRGIEEFQHHSLVLTKA--------------   56 (294)
T ss_pred             CceeeEEEEEeCCHHHHHHHHHHccCCEEEEecC--C---------eEEEeccCcCCceEEEeeeC--------------
Confidence            6789999999999999999999999999764321  0         1112211 1 1222333211              


Q ss_pred             hhcCCCCceEEEEEeC---CHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCc
Q 013898          284 EHNEGAGVQHLALVSE---DIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQG  360 (434)
Q Consensus       284 ~~~~G~GvqHIAf~vd---DI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g  360 (434)
                         .+.|++|+||.|+   |++++.++|+++    |+++...+ ....                     ...+|-+|++|
T Consensus        57 ---~~~~~~hiaf~v~~~~dl~~~~~~l~~~----Gv~v~~~~-~~~~---------------------~~~~~~~DPdG  107 (294)
T TIGR02295        57 ---PSAALSYIGFRVSKEEDLDKAADFFQKL----GHPVRLVR-DGGQ---------------------PEALRVEDPFG  107 (294)
T ss_pred             ---CCcCccEEEEEeCCHHHHHHHHHHHHhc----CCcEEeec-CCCC---------------------ceEEEEECCCC
Confidence               2457999999997   789999999999    99887543 2110                     13457778888


Q ss_pred             eEEEEEc
Q 013898          361 TLLQIFT  367 (434)
Q Consensus       361 ~llqifT  367 (434)
                      ..++++.
T Consensus       108 ~~iEl~~  114 (294)
T TIGR02295       108 YPIEFYF  114 (294)
T ss_pred             CEEEEEE
Confidence            8888776

The enzyme from Bacillus brevis contains manganese.

>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins

Probab=98.61  E-value=1.2e-06  Score=77.49  Aligned_cols=109  Identities=17%  Similarity=0.130  Sum_probs=72.0

Q ss_pred             ceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCC--EEEEEEcCCCCCCCcccccCCCCCCCCC
Q 013898           31 NRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGD--LRFVFTAPYSPSISDAADAGNSSASLPT  108 (434)
Q Consensus        31 ~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~--i~~vl~~p~~~~~~~~~~~~~~~~~~~~  108 (434)
                      .+++||.|.|+|++++.+||++.|||++....+       .....++.++  ..+.+..                     
T Consensus         3 ~~l~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~-------~~~~~l~~~~~~~~~~l~~---------------------   54 (144)
T cd07239           3 VKISHVVLNSPDVDKTVAFYEDVLGFRVSDWLG-------DQMAFLRCNSDHHSIAIAR---------------------   54 (144)
T ss_pred             ceeeEEEEECCCHHHHHHHHHhcCCCEEEEeeC-------CeEEEEECCCCcceEEEcc---------------------
Confidence            479999999999999999999999999875422       0123344332  2233221                     


Q ss_pred             CChhHHhHHHHhcCCceeEEEEEecCHHHHH---HHHHHcCCCCCCCCccc-cCceEEEEEEecCCeEEEEeec
Q 013898          109 FDHAACRSFAASHGLAARSIAVEVEDADVAF---NTSVAHGAKPSSPPVIL-DNLAVIAEVQLYGDVVLRYVSY  178 (434)
Q Consensus       109 ~~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~---~ra~~~Ga~~~~~p~~~-~~~~~~~~i~~~Gg~~~~fvd~  178 (434)
                                 ....++.|+||.|+|++++.   +++.++|+++...|... .+......++.+.|..++|+..
T Consensus        55 -----------~~~~~~~hiaf~v~d~~~l~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~yf~DPdG~~iE~~~~  117 (144)
T cd07239          55 -----------GPHPSLNHVAFEMPSIDEVMRGIGRMIDKGIDILWGPGRHGPGDNTFAYFLDPGGFVIEYTSE  117 (144)
T ss_pred             -----------CCCCceEEEEEECCCHHHHHHHHHHHHHcCCceeeCCcccCCCCCEEEEEECCCCcEEEeccC
Confidence                       11246779999999977775   89999999876554321 1112233456677777777663

2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio

>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases

Probab=98.60  E-value=9.2e-07  Score=74.77  Aligned_cols=84  Identities=25%  Similarity=0.194  Sum_probs=59.5

Q ss_pred             cceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEe-C--C-EEEEEEcCCCCCCCcccccCCCCCC
Q 013898           30 VNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRS-G--D-LRFVFTAPYSPSISDAADAGNSSAS  105 (434)
Q Consensus        30 i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~-G--~-i~~vl~~p~~~~~~~~~~~~~~~~~  105 (434)
                      +++++||.|.|+|.+++.+||++.|||++....+        ....++. +  . ..+.+..                  
T Consensus         2 ~~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~------------------   55 (121)
T cd07266           2 ILRLGHVELRVTDLEKSREFYVDVLGLVETEEDD--------DRIYLRGLEEFIHHSLVLTK------------------   55 (121)
T ss_pred             cceeeEEEEEcCCHHHHHHHHHhccCCEEeccCC--------CeEEEEecCCCceEEEEEee------------------
Confidence            6789999999999999999999999999875422        1122221 1  1 1222211                  


Q ss_pred             CCCCChhHHhHHHHhcCCceeEEEEEe---cCHHHHHHHHHHcCCCCCCCC
Q 013898          106 LPTFDHAACRSFAASHGLAARSIAVEV---EDADVAFNTSVAHGAKPSSPP  153 (434)
Q Consensus       106 ~~~~~~~~~~~~l~~hG~gv~~Iaf~V---~Dvd~a~~ra~~~Ga~~~~~p  153 (434)
                                    ....++.+++|.|   +|+++++++++++|+++...|
T Consensus        56 --------------~~~~~~~hi~~~v~~~~dv~~~~~~l~~~g~~~~~~~   92 (121)
T cd07266          56 --------------APVAGLGHIAFRVRSEEDLDKAEAFFQELGLPTEWVE   92 (121)
T ss_pred             --------------CCCCceeEEEEECCCHHHHHHHHHHHHHcCCCccccc
Confidence                          0113678999999   478999999999999875543

This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ

>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=98.59  E-value=6.6e-07  Score=74.68  Aligned_cols=107  Identities=19%  Similarity=0.242  Sum_probs=70.4

Q ss_pred             eeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEc-CCCceEEEecccCCCCCCCchHHHHHhhcCCCC
Q 013898          212 AVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLAN-NDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAG  290 (434)
Q Consensus       212 v~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~-~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G~G  290 (434)
                      ..+.|+|++++.+||+++|||+.....     +     . ...+.. +.+...+.+.....               .+.+
T Consensus         4 ~~l~v~Dl~~s~~FY~~~lG~~~~~~~-----~-----~-~~~~~~~~~~~~~~~~~~~~~---------------~~~~   57 (112)
T cd07238           4 PNLPVADPEAAAAFYADVLGLDVVMDH-----G-----W-IATFASPQNMTVQVSLATEGG---------------TATV   57 (112)
T ss_pred             ceEecCCHHHHHHHHHHhcCceEEEcC-----C-----c-eEEEeecCCCCcEEEEecCCC---------------CCCC
Confidence            357789999999999999999975321     0     0 111222 22245555543310               1234


Q ss_pred             ceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEEEEcc
Q 013898          291 VQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFTK  368 (434)
Q Consensus       291 vqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llqifT~  368 (434)
                      ..||+|.|+|+++++++|+++    |+++...| ..        ..       +    .....+-.|++|..+.++|.
T Consensus        58 ~~~i~~~v~d~~~~~~~l~~~----G~~~~~~~-~~--------~~-------~----g~~~~~~~DP~Gn~i~~~~~  111 (112)
T cd07238          58 VPDLSIEVDDVDAALARAVAA----GFAIVYGP-TD--------EP-------W----GVRRFFVRDPFGKLVNILTH  111 (112)
T ss_pred             CCEEEEEeCCHHHHHHHHHhc----CCeEecCC-cc--------CC-------C----ceEEEEEECCCCCEEEEEEc
Confidence            679999999999999999999    99988643 22        00       0    11244667888988888864

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.

>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=98.59  E-value=6.6e-07  Score=75.38  Aligned_cols=93  Identities=16%  Similarity=0.150  Sum_probs=61.3

Q ss_pred             EEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCC-EEEEEEcCCCCCCCcccccCCCCCCCCCCChh
Q 013898           34 HHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGD-LRFVFTAPYSPSISDAADAGNSSASLPTFDHA  112 (434)
Q Consensus        34 ~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~-i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~  112 (434)
                      -||.|.|+|++++++||++.|||++..+..   +    ....++.++ ..+.+..+.....        .          
T Consensus         2 ~~~~l~v~d~~~s~~Fy~~~lG~~~~~~~~---~----~~~~l~~~~~~~~~l~~~~~~~~--------~----------   56 (122)
T cd08354           2 LETALYVDDLEAAEAFYEDVLGLELMLKED---R----RLAFFWVGGRGMLLLFDPGATST--------P----------   56 (122)
T ss_pred             eEEEEEeCCHHHHHHHHHhccCCEEeecCC---C----ceEEEEcCCCcEEEEEecCCccc--------c----------
Confidence            589999999999999999999999886421   1    123344444 4444444221100        0          


Q ss_pred             HHhHHHHhc-CCceeEEEEEe--cCHHHHHHHHHHcCCCCCCCC
Q 013898          113 ACRSFAASH-GLAARSIAVEV--EDADVAFNTSVAHGAKPSSPP  153 (434)
Q Consensus       113 ~~~~~l~~h-G~gv~~Iaf~V--~Dvd~a~~ra~~~Ga~~~~~p  153 (434)
                        ......+ ..++.+++|+|  +|++++++++.++|+++...+
T Consensus        57 --~~~~~~~~~~~~~~~~~~v~~~dl~~~~~~l~~~g~~~~~~~   98 (122)
T cd08354          57 --GGEIPPHGGSGPGHFAFAIPAEELAEWEAHLEAKGVAIESEV   98 (122)
T ss_pred             --cCCCCCCCCCCccEEEEEcCHHHHHHHHHHHHhcCCceeccc
Confidence              0001112 24778999998  589999999999999865544

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.

>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins

Probab=98.59  E-value=1.3e-06  Score=74.01  Aligned_cols=78  Identities=18%  Similarity=0.201  Sum_probs=56.2

Q ss_pred             EEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCChhHHh
Q 013898           36 VEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHAACR  115 (434)
Q Consensus        36 I~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (434)
                      ..|.|+|++++++||++ |||+...+..  .     ....++.|+..+.|.......                       
T Consensus         6 ~~l~v~Dl~~s~~FY~~-lG~~~~~~~~--~-----~~~~~~~~~~~l~l~~~~~~~-----------------------   54 (120)
T cd08350           6 PNLPSRDLDATEAFYAR-LGFSVGYRQA--A-----GYMILRRGDLELHFFAHPDLD-----------------------   54 (120)
T ss_pred             ceeEcCCHHHHHHHHHH-cCCEEEecCC--C-----CEEEEEcCCEEEEEEecCcCC-----------------------
Confidence            57899999999999999 9999876532  1     234456787777775421000                       


Q ss_pred             HHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCC
Q 013898          116 SFAASHGLAARSIAVEVEDADVAFNTSVAHGAKP  149 (434)
Q Consensus       116 ~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~  149 (434)
                           ......+++|.|+|+++++++++++|++.
T Consensus        55 -----~~~~~~~~~~~v~dvd~~~~~l~~~G~~~   83 (120)
T cd08350          55 -----PATSPFGCCLRLPDVAALHAEFRAAGLPE   83 (120)
T ss_pred             -----CCCCcceEEEEeCCHHHHHHHHHHhCccc
Confidence                 01122468999999999999999999974

BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.

>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A

Probab=98.58  E-value=6.4e-07  Score=73.86  Aligned_cols=84  Identities=19%  Similarity=0.118  Sum_probs=56.7

Q ss_pred             EEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCE----EEEEEcCCCCCCCcccccCCCCCCCCCCChhH
Q 013898           38 FWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDL----RFVFTAPYSPSISDAADAGNSSASLPTFDHAA  113 (434)
Q Consensus        38 ~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i----~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~  113 (434)
                      |+|+|++++++||++.|||+++...+  +      ...+..|..    ...+......                      
T Consensus         1 l~v~d~~~a~~FY~~~lg~~~~~~~~--~------~~~~~~~~~~~~~~~~~~~~~~~----------------------   50 (108)
T PF12681_consen    1 LPVSDLEAAAAFYEDVLGFEVVFDDP--D------YVDFSLGFRFHDGVIEFLQFPDP----------------------   50 (108)
T ss_dssp             EEESSHHHHHHHHHHTTTSEEEEEET--S------EEEEEETEEEEEEEEEEEEEESS----------------------
T ss_pred             CccCCHHHHHHHHHHhcCCEEEEeCC--C------eEEEEeccchhhhhHHHccCCcc----------------------
Confidence            68999999999999999999998543  1      111222211    1111111000                      


Q ss_pred             HhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccc
Q 013898          114 CRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVIL  156 (434)
Q Consensus       114 ~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~  156 (434)
                           ...+.+..+++|+|+|+++++++++++|++++.+|...
T Consensus        51 -----~~~~~~~~~~~~~v~dv~~~~~~l~~~G~~~~~~~~~~   88 (108)
T PF12681_consen   51 -----PGPPGGGFHLCFEVEDVDALYERLKELGAEIVTEPRDD   88 (108)
T ss_dssp             -----SSSSSSEEEEEEEESHHHHHHHHHHHTTSEEEEEEEEE
T ss_pred             -----ccCCCceeEEEEEEcCHHHHHHHHHHCCCeEeeCCEEc
Confidence                 01234667999999999999999999999887766553

...

>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1

Probab=98.58  E-value=9e-07  Score=75.22  Aligned_cols=83  Identities=16%  Similarity=0.088  Sum_probs=59.3

Q ss_pred             eEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCC--EEEEEEcCCCCCCCcccccCCCCCCCCCC
Q 013898           32 RFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGD--LRFVFTAPYSPSISDAADAGNSSASLPTF  109 (434)
Q Consensus        32 ~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~--i~~vl~~p~~~~~~~~~~~~~~~~~~~~~  109 (434)
                      ++.||.|.|+|++++++||++.|||+++.+..  .     ....++.++  ..+.+...                     
T Consensus         2 ~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~~--~-----~~~~~~~~~~~~~~~l~~~---------------------   53 (120)
T cd07252           2 SLGYLGVESSDLDAWRRFATDVLGLQVGDRPE--D-----GALYLRMDDRAWRIAVHPG---------------------   53 (120)
T ss_pred             cccEEEEEeCCHHHHHHHHHhccCceeccCCC--C-----CeEEEEccCCceEEEEEeC---------------------
Confidence            68999999999999999999999998765421  1     123344433  34444321                     


Q ss_pred             ChhHHhHHHHhcCCceeEEEEEec---CHHHHHHHHHHcCCCCCCCC
Q 013898          110 DHAACRSFAASHGLAARSIAVEVE---DADVAFNTSVAHGAKPSSPP  153 (434)
Q Consensus       110 ~~~~~~~~l~~hG~gv~~Iaf~V~---Dvd~a~~ra~~~Ga~~~~~p  153 (434)
                                 ...+..++||.|+   |+++++++++++|+++...|
T Consensus        54 -----------~~~~~~~~~f~v~~~~dl~~~~~~l~~~Gv~~~~~~   89 (120)
T cd07252          54 -----------EADDLAYAGWEVADEAALDALAARLRAAGVAVEEGS   89 (120)
T ss_pred             -----------CCCceeEEEEEECCHHHHHHHHHHHHHcCCeEEEcC
Confidence                       0135568999997   48999999999999876544

13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-

>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=98.57  E-value=1.4e-06  Score=73.59  Aligned_cols=108  Identities=18%  Similarity=0.103  Sum_probs=69.4

Q ss_pred             EEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCChhHH
Q 013898           35 HVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHAAC  114 (434)
Q Consensus        35 HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (434)
                      ||.+.|+|++++.+||++.|||+...+.+  .    ........+.+.+.+..+..                        
T Consensus         4 hv~l~v~d~~~a~~FY~~~lG~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~------------------------   53 (120)
T cd07254           4 HVALNVDDLEASIAFYSKLFGVEPTKVRD--D----YAKFLLEDPRLNFVLNERPG------------------------   53 (120)
T ss_pred             EEEEEeCCHHHHHHHHHHHhCCeEecccC--C----eeEEEecCCceEEEEecCCC------------------------
Confidence            89999999999999999999998765532  1    11222233445554443110                        


Q ss_pred             hHHHHhcCCceeEEEEEecC---HHHHHHHHHHcCCCCCCCCccccC--ceEEEEEEecCCeEEEEee
Q 013898          115 RSFAASHGLAARSIAVEVED---ADVAFNTSVAHGAKPSSPPVILDN--LAVIAEVQLYGDVVLRYVS  177 (434)
Q Consensus       115 ~~~l~~hG~gv~~Iaf~V~D---vd~a~~ra~~~Ga~~~~~p~~~~~--~~~~~~i~~~Gg~~~~fvd  177 (434)
                           ....++.+++|+|+|   ++++++++.++|+++...|....+  ......++.++|..++|+.
T Consensus        54 -----~~~~~~~h~~f~v~~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~  116 (120)
T cd07254          54 -----APGGGLNHLGVQVDSAEEVAEAKARAEAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEVFV  116 (120)
T ss_pred             -----CCCCCeeEEEEEeCCHHHHHHHHHHHHHcCCeEEccCCcccccCCcceEEEECCCCCEEEEEE
Confidence                 001467799999988   788999999999987665432211  1123445566666666654

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.

>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=98.57  E-value=1.6e-06  Score=73.91  Aligned_cols=100  Identities=13%  Similarity=0.145  Sum_probs=61.6

Q ss_pred             EEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCChh
Q 013898           33 FHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHA  112 (434)
Q Consensus        33 l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~  112 (434)
                      +.+|+|.|+|++++++||+. |||+.......+.     ...+...++..+.|........               +...
T Consensus         1 ~~~v~l~V~Dl~~s~~FY~~-lGf~~~~~~~~~~-----~~~~~~~~~~~l~l~~~~~~~~---------------~~~~   59 (124)
T cd09012           1 MIFINLPVKDLEKSTAFYTA-LGFEFNPQFSDEK-----AACMVISDNIFVMLLTEDFFQT---------------FTPK   59 (124)
T ss_pred             CEEEEeecCCHHHHHHHHHH-CCCEEccccCCCC-----eEEEEECCceEEEEEcHHHHhh---------------ccCC
Confidence            36899999999999999975 9999765322111     1222223456666654211000               0000


Q ss_pred             HHhHHHHhcCCceeEEEEEec---CHHHHHHHHHHcCCCCCCCCccc
Q 013898          113 ACRSFAASHGLAARSIAVEVE---DADVAFNTSVAHGAKPSSPPVIL  156 (434)
Q Consensus       113 ~~~~~l~~hG~gv~~Iaf~V~---Dvd~a~~ra~~~Ga~~~~~p~~~  156 (434)
                      ..   ....+.+..+++|.|+   |+++++++++++|++++.+|...
T Consensus        60 ~~---~~~~~~~~~~l~f~v~~~~~vd~~~~~l~~~G~~i~~~p~~~  103 (124)
T cd09012          60 PI---ADTKKSTEVLISLSADSREEVDELVEKALAAGGKEFREPQDH  103 (124)
T ss_pred             Cc---ccCCCCCeEEEEEeCCCHHHHHHHHHHHHHCCCcccCCcccC
Confidence            00   0011234568999998   58899999999999988776543

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.

>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=98.57  E-value=8.4e-07  Score=75.17  Aligned_cols=122  Identities=12%  Similarity=0.149  Sum_probs=71.7

Q ss_pred             eeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHH--hhc
Q 013898          209 LDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYL--EHN  286 (434)
Q Consensus       209 iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl--~~~  286 (434)
                      +.|+.+.|.|++++.+||+++|||+......  +.     +.  ..+..  +...+.+.....  ........+.  ...
T Consensus         1 ~~~~~l~v~D~~~s~~FY~~~lG~~~~~~~~--~~-----~~--~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~   67 (125)
T cd07264           1 FGYTIIYVEDVEKTLEFYERAFGFERRFLHE--SG-----DY--GELET--GETTLAFASHDL--AESNLKGGFVKADPA   67 (125)
T ss_pred             CceEEEEEcCHHHHHHHHHHhhCCeEEeecC--CC-----cE--EEecC--CcEEEEEEcccc--cccccccCccCCccc
Confidence            3599999999999999999999999764321  10     01  11111  223333332110  0000000100  000


Q ss_pred             CCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEEEE
Q 013898          287 EGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIF  366 (434)
Q Consensus       287 ~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llqif  366 (434)
                      ..++.-|++|.|+|+++++++++++    |++++.. |...        +       +    .....+-.|++|+++.+.
T Consensus        68 ~~~~~~~~~~~v~di~~~~~~l~~~----G~~~~~~-~~~~--------~-------~----g~~~~~~~DPdG~~~~~~  123 (125)
T cd07264          68 QPPAGFEIAFVTDDVAAAFARAVEA----GAVLVSE-PKEK--------P-------W----GQTVAYVRDINGFLIELC  123 (125)
T ss_pred             cCCCcEEEEEEcCCHHHHHHHHHHc----CCEeccC-CccC--------C-------C----CcEEEEEECCCCCEEEEe
Confidence            1233459999999999999999999    9998864 3320        0       0    012335578889999886


Q ss_pred             c
Q 013898          367 T  367 (434)
Q Consensus       367 T  367 (434)
                      +
T Consensus       124 ~  124 (125)
T cd07264         124 S  124 (125)
T ss_pred             c
Confidence            5

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.

>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=98.55  E-value=1.1e-06  Score=74.54  Aligned_cols=116  Identities=16%  Similarity=0.119  Sum_probs=72.1

Q ss_pred             eeeeeEecCCHHHHHHHHHHh---hCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhh
Q 013898          209 LDHAVGNVPELAPAVAYVKSF---TGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEH  285 (434)
Q Consensus       209 iDHv~i~V~dl~~~~~fY~~v---LGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~  285 (434)
                      |+|+++.|+|++++++||+++   |||+......   ..       ...+..+.+...+.|..+..   ...       .
T Consensus         1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~~---~~-------~~~~~~~~~~~~~~l~~~~~---~~~-------~   60 (123)
T cd07262           1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMEDG---PG-------AVGYGKGGGGPDFWVTKPFD---GEP-------A   60 (123)
T ss_pred             CcEEEEecCcHHHHHHHHHHHHhhcCceEEeecC---Cc-------eeEeccCCCCceEEEecccc---CCC-------C
Confidence            689999999999999999999   6888764320   00       11222332345666654321   100       1


Q ss_pred             cCCCCceEEEEEeCC---HHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceE
Q 013898          286 NEGAGVQHLALVSED---IFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTL  362 (434)
Q Consensus       286 ~~G~GvqHIAf~vdD---I~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~l  362 (434)
                       ...+..||||.|+|   +++..++++++    |+.+...| ...   ..  .+           ...-.+|-+|++|+.
T Consensus        61 -~~~~~~hi~f~v~~~~~v~~~~~~~~~~----g~~~~~~~-~~~---~~--~~-----------~~~~~~~~~DPdG~~  118 (123)
T cd07262          61 -TAGNGTHVAFAAPSREAVDAFHAAALAA----GGTDEGAP-GLR---PH--YG-----------PGYYAAYVRDPDGNK  118 (123)
T ss_pred             -CCCCceEEEEECCCHHHHHHHHHHHHHc----CCccCCCC-CCC---CC--CC-----------CCeEEEEEECCCCCE
Confidence             12345799999997   67788888888    99887653 210   00  00           011135778899998


Q ss_pred             EEEE
Q 013898          363 LQIF  366 (434)
Q Consensus       363 lqif  366 (434)
                      +.++
T Consensus       119 ie~~  122 (123)
T cd07262         119 IEAV  122 (123)
T ss_pred             EEEe
Confidence            8876

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.

>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1

Probab=98.55  E-value=3.3e-06  Score=72.81  Aligned_cols=113  Identities=18%  Similarity=0.165  Sum_probs=70.1

Q ss_pred             eEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeC---CEEEEEEcCCCCCCCcccccCCCCCCCCC
Q 013898           32 RFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSG---DLRFVFTAPYSPSISDAADAGNSSASLPT  108 (434)
Q Consensus        32 ~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G---~i~~vl~~p~~~~~~~~~~~~~~~~~~~~  108 (434)
                      +|+||.+.|+|++++++||++.|||++....+.      .....++.+   ...+.+.......                
T Consensus         1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~------~~~~~~~~~~~~~~~l~l~~~~~~~----------------   58 (134)
T cd08348           1 RLSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPL------GGLVFLSRDPDEHHQIALITGRPAA----------------   58 (134)
T ss_pred             CeeEEEEEecCHHHHHHHHHHhcCCEEEeeccC------CcEEEEEecCCCceEEEEEecCCCC----------------
Confidence            589999999999999999999999998765321      122333333   3456655421110                


Q ss_pred             CChhHHhHHHHhcCCceeEEEEEecCHH---HHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEee
Q 013898          109 FDHAACRSFAASHGLAARSIAVEVEDAD---VAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVS  177 (434)
Q Consensus       109 ~~~~~~~~~l~~hG~gv~~Iaf~V~Dvd---~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd  177 (434)
                            .   ...+.++.|++|.|+|++   ++++++.+.|+++...+..  +......++++.|..+.+..
T Consensus        59 ------~---~~~~~~~~h~~f~v~~~~~v~~~~~~l~~~G~~~~~~~~~--~~~~~~~~~DP~G~~ie~~~  119 (134)
T cd08348          59 ------P---PPGPAGLNHIAFEVDSLDDLRDLYERLRAAGITPVWPVDH--GNAWSIYFRDPDGNRLELFV  119 (134)
T ss_pred             ------C---CCCCCCceEEEEEeCCHHHHHHHHHHHHHCCCCccccCCC--CceeEEEEECCCCCEEEEEE
Confidence                  0   012347789999999865   5889999999986654321  11122233444444555543

13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are

>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase

Probab=98.55  E-value=1.6e-06  Score=85.83  Aligned_cols=117  Identities=12%  Similarity=0.071  Sum_probs=71.9

Q ss_pred             CCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCC-EEEEEEcCCCCCCCcccccCCCCCCC
Q 013898           28 FRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGD-LRFVFTAPYSPSISDAADAGNSSASL  106 (434)
Q Consensus        28 ~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~-i~~vl~~p~~~~~~~~~~~~~~~~~~  106 (434)
                      +.+++++||.+.|+|++++.+||+++|||++..+...+.+... ....+..++ ...                       
T Consensus       141 ~~~~~i~Hi~l~V~Dl~~s~~FY~~~LG~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-----------------------  196 (303)
T TIGR03211       141 VGARRLDHCLLYGEDVAENTRFFTEVLGFRLTEQVVLGDGKEQ-AAAWLSVSNKAHD-----------------------  196 (303)
T ss_pred             cCceeEEEEeEEeCCHHHHHHHHHHhcCCEEEeeEEcCCCcEE-EEEEEEcCCCCcc-----------------------
Confidence            4578999999999999999999999999998765322222110 111222111 000                       


Q ss_pred             CCCChhHHhHHHHhcCCc-eeEEEEEecC---HHHHHHHHHHcCCCCCCCCcccc-CceEEEEEEecCCeEEEEe
Q 013898          107 PTFDHAACRSFAASHGLA-ARSIAVEVED---ADVAFNTSVAHGAKPSSPPVILD-NLAVIAEVQLYGDVVLRYV  176 (434)
Q Consensus       107 ~~~~~~~~~~~l~~hG~g-v~~Iaf~V~D---vd~a~~ra~~~Ga~~~~~p~~~~-~~~~~~~i~~~Gg~~~~fv  176 (434)
                             + .+....+.| +.||||+|+|   ++++++++.++|+++..+|.... +.....-++.++|..+++.
T Consensus       197 -------~-~~~~~~~~g~~~Hiaf~v~~~~~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iEl~  263 (303)
T TIGR03211       197 -------I-AFVGDPEPGKLHHVSFFLDSWEDVLKAADVMSKNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETF  263 (303)
T ss_pred             -------c-ceecCCCCCceEEEEEEcCCHHHHHHHHHHHHhCCCceeeCCcccCCCCceEEEEECCCCCEEEEe
Confidence                   0 011122345 8899999996   56688899999998766664321 1112333456666666665

Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.

>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=98.54  E-value=1.3e-06  Score=74.07  Aligned_cols=118  Identities=21%  Similarity=0.238  Sum_probs=72.3

Q ss_pred             eEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcCCCCce
Q 013898          213 VGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQ  292 (434)
Q Consensus       213 ~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G~Gvq  292 (434)
                      .+.|.|++++++||+++|||+.......++ +    .+....+..+++  .+.+.....   ......   ....+.+-.
T Consensus         4 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~-~----~~~~~~l~~~~~--~~~l~~~~~---~~~~~~---~~~~~~~~~   70 (122)
T cd08355           4 TLRYRDAAAAIDWLTDAFGFEERLVVPDDD-G----GVAHAELRFGDG--GVMVGSVRD---DYRASS---ARAGGAGTQ   70 (122)
T ss_pred             EEEECCHHHHHHHHHHhcCCEEEEEEeCCC-C----cEEEEEEEECCE--EEEEecCCC---cccccc---cccCCCceE
Confidence            467889999999999999999876542111 1    122222333333  333332211   111100   112345678


Q ss_pred             EEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEEEEc
Q 013898          293 HLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFT  367 (434)
Q Consensus       293 HIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llqifT  367 (434)
                      |++|.|+|++++.++++++    |++++.. |..-      -.             .....+-+|++|+++++.+
T Consensus        71 ~~~~~v~d~d~~~~~l~~~----G~~v~~~-~~~~------~~-------------g~~~~~~~DPdG~~~~l~~  121 (122)
T cd08355          71 GVYVVVDDVDAHYERARAA----GAEILRE-PTDT------PY-------------GSREFTARDPEGNLWTFGT  121 (122)
T ss_pred             EEEEEECCHHHHHHHHHHC----CCEEeeC-cccc------CC-------------CcEEEEEECCCCCEEEEec
Confidence            9999999999999999999    9998853 3220      00             1123456788899998864

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.

>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=98.49  E-value=5.9e-07  Score=76.01  Aligned_cols=120  Identities=18%  Similarity=0.178  Sum_probs=69.3

Q ss_pred             eeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcCCCC
Q 013898          211 HAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAG  290 (434)
Q Consensus       211 Hv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G~G  290 (434)
                      ||++.|+|++++++||+++|||+......    .     .  ..+...+..+.+.+.....   ......  .......+
T Consensus         2 Hi~l~v~Dl~~s~~FY~~~lG~~~~~~~~----~-----~--~~~~~~~~~~~l~~~~~~~---~~~~~~--~~~~~~~~   65 (125)
T cd08357           2 HLAIPVRDLEAARAFYGDVLGCKEGRSSE----T-----W--VDFDFFGHQLVAHLSPNFN---ADASDN--AVDGHPVP   65 (125)
T ss_pred             eEEEEeCCHHHHHHHHHHhcCCEEeeccC----C-----c--ccccccCcEEEEEeccCCC---cccccC--CCCCCccC
Confidence            99999999999999999999999854311    0     0  0011112223333322110   000000  00112235


Q ss_pred             ceEEEE--EeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEEEE
Q 013898          291 VQHLAL--VSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIF  366 (434)
Q Consensus       291 vqHIAf--~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llqif  366 (434)
                      ..|+||  .++|+++++++|+++    |++++..| ...+..-   .            -....++-+|++|+++++=
T Consensus        66 ~~h~~~~~~~~dv~~~~~~l~~~----g~~~~~~p-~~~~~~~---~------------~~~~~~~~~DPdG~~iE~~  123 (125)
T cd08357          66 VPHFGLILSEEEFDALAERLEAA----GVEFLIEP-YTRFEGQ---P------------GEQETFFLKDPSGNALEFK  123 (125)
T ss_pred             CceEEEEEeHHHHHHHHHHHHHC----CCcEecCc-ceeccCC---c------------CceeEEEEECCCCCEEEEe
Confidence            789865  668999999999999    99998643 3210000   0            0123457789999988764

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.

>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=98.49  E-value=2.3e-06  Score=72.15  Aligned_cols=101  Identities=17%  Similarity=0.159  Sum_probs=65.9

Q ss_pred             EEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCChhHHhH
Q 013898           37 EFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHAACRS  116 (434)
Q Consensus        37 ~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (434)
                      .+.|+|++++++||++ |||++....+        ....++.|+..+.|.......                        
T Consensus         6 ~l~v~Dl~~s~~FY~~-LGf~~~~~~~--------~~~~l~~~~~~l~l~~~~~~~------------------------   52 (113)
T cd08356           6 FIPAKDFAESKQFYQA-LGFELEWEND--------NLAYFRLGNCAFYLQDYYVKD------------------------   52 (113)
T ss_pred             ccccccHHHHHHHHHH-hCCeeEecCC--------CEEEEEcCCEEEEeecCCCcc------------------------
Confidence            4678999999999987 9999986632        234556788888775422110                        


Q ss_pred             HHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEeeccCc
Q 013898          117 FAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSYKDK  181 (434)
Q Consensus       117 ~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd~~~~  181 (434)
                          . .+-.+++|.|+|+++++++++++|++...++... .    +.-..+|...+++.|| +|
T Consensus        53 ----~-~~~~~~~~~v~did~~~~~l~~~G~~~~~~~~~~-~----~~~~~~g~r~f~~~DP-dG  106 (113)
T cd08356          53 ----W-AENSMLHLEVDDLEAYYEHIKALGLPKKFPGVKL-P----PITQPWWGREFFLHDP-SG  106 (113)
T ss_pred             ----c-ccCCEEEEEECCHHHHHHHHHHcCCcccccceec-C----ccccCCCcEEEEEECC-Cc
Confidence                0 1113689999999999999999998743221100 0    0012467667777774 44

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.

>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=98.48  E-value=2.5e-06  Score=71.12  Aligned_cols=104  Identities=15%  Similarity=0.075  Sum_probs=65.1

Q ss_pred             EEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeC---CEEEEEEcCCCCCCCcccccCCCCCCCCCCChh
Q 013898           36 VEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSG---DLRFVFTAPYSPSISDAADAGNSSASLPTFDHA  112 (434)
Q Consensus        36 I~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G---~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~  112 (434)
                      -.+.|+|++++.+||++.|||++....+        ....++.+   ...+.+.....                      
T Consensus         4 ~~l~v~Dl~~s~~FY~~~lG~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~----------------------   53 (112)
T cd07238           4 PNLPVADPEAAAAFYADVLGLDVVMDHG--------WIATFASPQNMTVQVSLATEGG----------------------   53 (112)
T ss_pred             ceEecCCHHHHHHHHHHhcCceEEEcCC--------ceEEEeecCCCCcEEEEecCCC----------------------
Confidence            3578999999999999999999864311        12223332   34444432100                      


Q ss_pred             HHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEee
Q 013898          113 ACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVS  177 (434)
Q Consensus       113 ~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd  177 (434)
                              .+....+++|.|+|++++++++++.|+++..+|.......+...+.++.|..+.++.
T Consensus        54 --------~~~~~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~Gn~i~~~~  110 (112)
T cd07238          54 --------TATVVPDLSIEVDDVDAALARAVAAGFAIVYGPTDEPWGVRRFFVRDPFGKLVNILT  110 (112)
T ss_pred             --------CCCCCCEEEEEeCCHHHHHHHHHhcCCeEecCCccCCCceEEEEEECCCCCEEEEEE
Confidence                    012234799999999999999999999987766443222233344455554554443

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.

>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC)

Probab=98.46  E-value=2e-06  Score=75.83  Aligned_cols=106  Identities=12%  Similarity=0.099  Sum_probs=65.7

Q ss_pred             EEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeC-CE-EEEEEcCCCCCCCcccccCCCCCCCCCCCh
Q 013898           34 HHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSG-DL-RFVFTAPYSPSISDAADAGNSSASLPTFDH  111 (434)
Q Consensus        34 ~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G-~i-~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~  111 (434)
                      .||.+.|+|++++.+||++.|||+++.+.+       .....++.+ +. ...+..                        
T Consensus         1 ~Hv~l~V~Dle~s~~Fy~~vLG~~~~~~~~-------~~~~~l~~~~~~~~h~~~~------------------------   49 (141)
T cd07258           1 GHVVIGSENFEASRDSLVEDFGFRVSDLIE-------DRIVFMRCHPNPFHHTFAV------------------------   49 (141)
T ss_pred             CcEEEecCCHHHHHHHHHhcCCCEeeeeeC-------CEEEEEEcCCCCCcceeee------------------------
Confidence            499999999999999999999999886632       112333322 11 111100                        


Q ss_pred             hHHhHHHHhcCCceeEEEEEecCH---HHHHHHHHHcCCCCCCCCcccc-CceEEEEEEecCCeEEEEe
Q 013898          112 AACRSFAASHGLAARSIAVEVEDA---DVAFNTSVAHGAKPSSPPVILD-NLAVIAEVQLYGDVVLRYV  176 (434)
Q Consensus       112 ~~~~~~l~~hG~gv~~Iaf~V~Dv---d~a~~ra~~~Ga~~~~~p~~~~-~~~~~~~i~~~Gg~~~~fv  176 (434)
                            ......++.||||.|+|.   +++++++.++|+++...|.... ......-++.+.|..++|.
T Consensus        50 ------~~~~~~gl~Hiaf~v~~~~~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~  112 (141)
T cd07258          50 ------GPASSSHFHHVNFMVTDIDDIGKALYRIKAHDVKVVFGPGRHPPSDSIFFYFLDPDGITVEYS  112 (141)
T ss_pred             ------ccCCCCceEEEEEECCCHHHHHHHHHHHHHCCCcEEeCCceECCCCCEEEEEECCCCCEEEEE
Confidence                  001235899999999864   6789999999998766654321 1122223444555555544

This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.

>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=98.44  E-value=5.4e-06  Score=69.67  Aligned_cols=116  Identities=19%  Similarity=0.088  Sum_probs=73.4

Q ss_pred             eEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcCCCCce
Q 013898          213 VGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQ  292 (434)
Q Consensus       213 ~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G~Gvq  292 (434)
                      .+.|.|++++++||+++|||+.......++.     .+.-..+...  ...+.+..+..   ...    .... .+.+..
T Consensus         6 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~-----~~~~~~l~~~--~~~~~l~~~~~---~~~----~~~~-~~~~~~   70 (122)
T cd07246           6 YLIVRDAAAAIDFYKKAFGAEELERMPDDDG-----RVMHAELRIG--DSVLMLADEFP---EHG----SPAS-WGGTPV   70 (122)
T ss_pred             EEEECCHHHHHHHHHHhhCCEEEEEEeCCCC-----CEEEEEEEEC--CEEEEEecCCc---ccC----CCCC-CCCceE
Confidence            3678899999999999999998766431111     0111122222  23566655431   110    1111 345678


Q ss_pred             EEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEEEEc
Q 013898          293 HLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFT  367 (434)
Q Consensus       293 HIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llqifT  367 (434)
                      |++|.|+|++++++++.++    |++++.. |..+.      .             .....+-+|++|+++++.+
T Consensus        71 ~~~~~v~d~~~~~~~l~~~----G~~~~~~-~~~~~------~-------------g~~~~~~~DP~G~~~~l~~  121 (122)
T cd07246          71 SLHLYVEDVDATFARAVAA----GATSVMP-PADQF------W-------------GDRYGGVRDPFGHRWWIAT  121 (122)
T ss_pred             EEEEEeCCHHHHHHHHHHC----CCeEecC-ccccc------c-------------cceEEEEECCCCCEEEEec
Confidence            9999999999999999999    9998864 34321      0             1123456788899988754

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.

>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=98.44  E-value=1e-06  Score=74.59  Aligned_cols=116  Identities=12%  Similarity=0.100  Sum_probs=70.6

Q ss_pred             eeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcC
Q 013898          208 RLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNE  287 (434)
Q Consensus       208 ~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~  287 (434)
                      ++.|+.+.|.|++++++||+++|||+......   .      .  ... .  +.+.+.+............      ...
T Consensus         2 ~~~~~~l~v~D~~~a~~FY~~~lG~~~~~~~~---~------~--~~~-~--~~~~l~~~~~~~~~~~~~~------~~~   61 (120)
T cd09011           2 KFKNPLLVVKDIEKSKKFYEKVLGLKVVMDFG---E------N--VTF-E--GGFALQEGYSWLEGISKAD------IIE   61 (120)
T ss_pred             EEEEEEEEECCHHHHHHHHHHhcCCEEeeccC---c------e--EEE-e--ccceeccchhhhccCCccc------ccc
Confidence            57899999999999999999999999764321   0      0  111 1  1122221110000000000      112


Q ss_pred             CCCceEEEEEeCCHHHHHHHHHHhcCCCCc-eeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEEEE
Q 013898          288 GAGVQHLALVSEDIFRTLREMRKRSGVGGF-EFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIF  366 (434)
Q Consensus       288 G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv-~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llqif  366 (434)
                      +.+-.|++|.|+||++++++|+++    |+ +++..| ...        +       +    ....++-+|++|+++.|.
T Consensus        62 ~~~~~~l~~~v~dvd~~~~~l~~~----g~~~~~~~~-~~~--------~-------~----g~r~~~~~DPdGn~iei~  117 (120)
T cd09011          62 KSNNFELYFEEEDFDAFLDKLKRY----DNIEYVHPI-KEH--------P-------W----GQRVVRFYDPDKHIIEVG  117 (120)
T ss_pred             cCCceEEEEEehhhHHHHHHHHhc----CCcEEecCc-ccC--------C-------C----ccEEEEEECCCCCEEEEe
Confidence            344679999999999999999998    75 677543 220        0       0    112456788999998876


Q ss_pred             c
Q 013898          367 T  367 (434)
Q Consensus       367 T  367 (434)
                      +
T Consensus       118 ~  118 (120)
T cd09011         118 E  118 (120)
T ss_pred             c
Confidence            5

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.

>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins

Probab=98.44  E-value=4.6e-06  Score=69.87  Aligned_cols=82  Identities=15%  Similarity=0.148  Sum_probs=54.7

Q ss_pred             ceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeC--CEEEEEEcCCCCCCCcccccCCCCCCCCC
Q 013898           31 NRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSG--DLRFVFTAPYSPSISDAADAGNSSASLPT  108 (434)
Q Consensus        31 ~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G--~i~~vl~~p~~~~~~~~~~~~~~~~~~~~  108 (434)
                      .+|+||+|.|+|++++.+||. .|||++..+.+        ...++..+  ...+.+...                    
T Consensus         1 ~~i~hv~l~v~d~~~s~~FY~-~lG~~~~~~~~--------~~~~~~~~~~~~~~~~~~~--------------------   51 (112)
T cd08344           1 HSIDHFALEVPDLEVARRFYE-AFGLDVREEGD--------GLELRTAGNDHRWARLLEG--------------------   51 (112)
T ss_pred             CceeEEEEecCCHHHHHHHHH-HhCCcEEeecC--------ceEEEecCCCceEEEeecC--------------------
Confidence            369999999999999999997 69999875421        12222222  222333211                    


Q ss_pred             CChhHHhHHHHhcCCcee--EEEEEecCHHHHHHHHHHcCCCCCCCC
Q 013898          109 FDHAACRSFAASHGLAAR--SIAVEVEDADVAFNTSVAHGAKPSSPP  153 (434)
Q Consensus       109 ~~~~~~~~~l~~hG~gv~--~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p  153 (434)
                                  .+.++.  ++++.++|++++++++.++|+++..+|
T Consensus        52 ------------~~~~~~~~~~~~~~~d~~~~~~~l~~~Gi~~~~~~   86 (112)
T cd08344          52 ------------ARKRLAYLSFGIFEDDFAAFARHLEAAGVALAAAP   86 (112)
T ss_pred             ------------CCCceeeEEEEeEhhhHHHHHHHHHHcCCceecCC
Confidence                        011223  455567899999999999999876554

This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.

>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]

Probab=98.42  E-value=5.3e-07  Score=87.30  Aligned_cols=106  Identities=22%  Similarity=0.170  Sum_probs=83.1

Q ss_pred             cceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHH
Q 013898          204 YGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYL  283 (434)
Q Consensus       204 ~~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl  283 (434)
                      ..+.+++||.+.|++...+..||+..|||++..+-+.+   +......|.++++  |.+.+.++++..  ...+....++
T Consensus        13 g~~l~f~Hi~F~vgna~q~A~~y~~~fGfep~A~~~le---tg~~~~~s~alr~--g~~vFv~~s~~~--p~~~~~G~~l   85 (381)
T KOG0638|consen   13 GKFLRFHHIEFWVGNAKQAARWYCSGFGFEPLAYRGLE---TGSREWASHALRQ--GKIVFVFNSAYN--PDNSEYGDHL   85 (381)
T ss_pred             cceeeeeEEEEEecCcHHHHHHHHhhcCCcchhccccc---ccchHHHHHHhhc--CCEEEEEecCCC--CCchhhhhhh
Confidence            46899999999999999999999999999988654321   2222244555554  568888888763  3455666677


Q ss_pred             hhcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceecc
Q 013898          284 EHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMP  321 (434)
Q Consensus       284 ~~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~  321 (434)
                      .+ +|.||-.|||.|+|.+++++.++++    |..++.
T Consensus        86 ~~-HgdgvkdvafeVeD~da~~~~~va~----Ga~v~~  118 (381)
T KOG0638|consen   86 VK-HGDGVKDVAFEVEDADAIFQEAVAN----GAKVVR  118 (381)
T ss_pred             hh-cccchhceEEEecchHHHHHHHHHc----CCcccC
Confidence            77 4888999999999999999999999    988885

>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=98.41  E-value=1.9e-06  Score=72.84  Aligned_cols=94  Identities=17%  Similarity=0.041  Sum_probs=55.6

Q ss_pred             EEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCChhHH
Q 013898           35 HVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHAAC  114 (434)
Q Consensus        35 HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (434)
                      ||+|.|+|++++++||+++|||++.....  .      ...+..++..+.+........   .      ...     .. 
T Consensus         2 Hi~l~v~Dl~~s~~FY~~~lG~~~~~~~~--~------~~~~~~~~~~~~l~~~~~~~~---~------~~~-----~~-   58 (125)
T cd08357           2 HLAIPVRDLEAARAFYGDVLGCKEGRSSE--T------WVDFDFFGHQLVAHLSPNFNA---D------ASD-----NA-   58 (125)
T ss_pred             eEEEEeCCHHHHHHHHHHhcCCEEeeccC--C------cccccccCcEEEEEeccCCCc---c------ccc-----CC-
Confidence            99999999999999999999999865421  1      112232333333322111000   0      000     00 


Q ss_pred             hHHHHhcCCceeE--EEEEecCHHHHHHHHHHcCCCCCCCCc
Q 013898          115 RSFAASHGLAARS--IAVEVEDADVAFNTSVAHGAKPSSPPV  154 (434)
Q Consensus       115 ~~~l~~hG~gv~~--Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~  154 (434)
                         ......+..|  ++|.++|+++++++++++|+++..+|.
T Consensus        59 ---~~~~~~~~~h~~~~~~~~dv~~~~~~l~~~g~~~~~~p~   97 (125)
T cd08357          59 ---VDGHPVPVPHFGLILSEEEFDALAERLEAAGVEFLIEPY   97 (125)
T ss_pred             ---CCCCccCCceEEEEEeHHHHHHHHHHHHHCCCcEecCcc
Confidence               0001112334  456788999999999999999876664

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.

>cd07235 MRD Mitomycin C resistance protein (MRD)

Probab=98.41  E-value=2e-06  Score=72.75  Aligned_cols=116  Identities=20%  Similarity=0.190  Sum_probs=70.6

Q ss_pred             eeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHh--hc
Q 013898          209 LDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLE--HN  286 (434)
Q Consensus       209 iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~--~~  286 (434)
                      ||||++.|.|++++++||+ .|||+......  ..      .. ..+..+ +.++|.|.....   .    +.+..  ..
T Consensus         1 ~~~i~l~V~D~~~a~~FY~-~LGf~~~~~~~--~~------~~-~~~~~~-~~~~l~l~~~~~---~----~~~~~~~~~   62 (122)
T cd07235           1 LDAVGIVVADMAKSLDFYR-RLGFDFPEEAD--DE------PH-VEAVLP-GGVRLAWDTVES---I----RSFTPGWTP   62 (122)
T ss_pred             CceEEEEeccHHHHHHHHH-HhCceecCCcC--CC------Cc-EEEEeC-CCEEEEEEcccc---e----eeecCCCCC
Confidence            6899999999999999996 59999754321  00      00 112222 235555533210   0    00000  01


Q ss_pred             CCCCceEEEEEeC---CHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEE
Q 013898          287 EGAGVQHLALVSE---DIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLL  363 (434)
Q Consensus       287 ~G~GvqHIAf~vd---DI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~ll  363 (434)
                      .+.+-.|++|.++   ||++++++|+++    |+++... |....      .+             ....+-+|++|.++
T Consensus        63 ~~~~~~~l~~~~~~~~dvd~~~~~l~~~----G~~~~~~-~~~~~------~g-------------~~~~~~~DPdG~~i  118 (122)
T cd07235          63 TGGHRIALAFLCETPAEVDALYAELVGA----GYPGHKE-PWDAP------WG-------------QRYAIVKDPDGNLV  118 (122)
T ss_pred             CCCCcEEEEEEcCCHHHHHHHHHHHHHC----CCCcCCC-CccCC------CC-------------CEEEEEECCCCCEE
Confidence            2345678888875   899999999999    9988754 33210      01             12345688899999


Q ss_pred             EEE
Q 013898          364 QIF  366 (434)
Q Consensus       364 qif  366 (434)
                      .+|
T Consensus       119 el~  121 (122)
T cd07235         119 DLF  121 (122)
T ss_pred             EEe
Confidence            887

Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.

>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=98.31  E-value=7e-06  Score=69.89  Aligned_cols=115  Identities=14%  Similarity=0.149  Sum_probs=71.3

Q ss_pred             eeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhh----
Q 013898          210 DHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEH----  285 (434)
Q Consensus       210 DHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~----  285 (434)
                      .++++.|.|++++++||++ |||+....+.  ...     . ..... + +...+.|....       ..+.+...    
T Consensus         2 ~~v~l~V~Dl~~s~~FY~~-lGf~~~~~~~--~~~-----~-~~~~~-~-~~~~l~l~~~~-------~~~~~~~~~~~~   63 (124)
T cd09012           2 IFINLPVKDLEKSTAFYTA-LGFEFNPQFS--DEK-----A-ACMVI-S-DNIFVMLLTED-------FFQTFTPKPIAD   63 (124)
T ss_pred             EEEEeecCCHHHHHHHHHH-CCCEEccccC--CCC-----e-EEEEE-C-CceEEEEEcHH-------HHhhccCCCccc
Confidence            4789999999999999976 9999764332  110     1 11112 2 23555554421       01111110    


Q ss_pred             cCCCCceEEEEEeC---CHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceE
Q 013898          286 NEGAGVQHLALVSE---DIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTL  362 (434)
Q Consensus       286 ~~G~GvqHIAf~vd---DI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~l  362 (434)
                      ..+.+..|+||.|+   |++++.++++++    |++++.. |..+        +            .....|-+|++|++
T Consensus        64 ~~~~~~~~l~f~v~~~~~vd~~~~~l~~~----G~~i~~~-p~~~--------~------------~~~~~~~~DPdG~~  118 (124)
T cd09012          64 TKKSTEVLISLSADSREEVDELVEKALAA----GGKEFRE-PQDH--------G------------FMYGRSFADLDGHL  118 (124)
T ss_pred             CCCCCeEEEEEeCCCHHHHHHHHHHHHHC----CCcccCC-cccC--------C------------ceEEEEEECCCCCE
Confidence            12344679999998   588899999999    9999864 3321        0            00124778999999


Q ss_pred             EEEEc
Q 013898          363 LQIFT  367 (434)
Q Consensus       363 lqifT  367 (434)
                      +.++.
T Consensus       119 ie~~~  123 (124)
T cd09012         119 WEVLW  123 (124)
T ss_pred             EEEEE
Confidence            98874

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.

>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=98.25  E-value=1.7e-05  Score=66.16  Aligned_cols=90  Identities=18%  Similarity=0.183  Sum_probs=60.1

Q ss_pred             EEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCChhHHh
Q 013898           36 VEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHAACR  115 (434)
Q Consensus        36 I~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (434)
                      |.|.|+|++++++||++.|||++....+       ....+...++..+.+.......                       
T Consensus         2 ~~l~v~d~~~a~~FY~~~lg~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~-----------------------   51 (114)
T cd07261           2 VLLYVEDPAASAEFYSELLGREPVELSP-------TFALFVLGSGVKLGLWSRHTVE-----------------------   51 (114)
T ss_pred             EEEEECCHHHHHHHHHHHcCCCccCCCC-------ceEEEEeCCCcEEEEeeccccC-----------------------
Confidence            6789999999999999999999775421       1122222355666665421110                       


Q ss_pred             HHHHhcCCceeEEEEEecC---HHHHHHHHHHcCCCCCCCCccc
Q 013898          116 SFAASHGLAARSIAVEVED---ADVAFNTSVAHGAKPSSPPVIL  156 (434)
Q Consensus       116 ~~l~~hG~gv~~Iaf~V~D---vd~a~~ra~~~Ga~~~~~p~~~  156 (434)
                      ... ....+..+++|.|+|   ++++++++.++|+++..+|...
T Consensus        52 ~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~v~~~~~~~   94 (114)
T cd07261          52 PAS-DATGGGSELAFMVDDGAAVDALYAEWQAKGVKIIQEPTEM   94 (114)
T ss_pred             CCC-CCCCCceEEEEEcCCHHHHHHHHHHHHHCCCeEecCcccc
Confidence            000 011355789999986   8899999999999987766543

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.

>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=98.24  E-value=1.8e-05  Score=66.09  Aligned_cols=110  Identities=15%  Similarity=0.215  Sum_probs=70.3

Q ss_pred             eeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcCCCCc
Q 013898          212 AVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGV  291 (434)
Q Consensus       212 v~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G~Gv  291 (434)
                      +.+.|.|++++++||+++|||+......    .     .  ..+..+ +...+.+.....   ...      ......|.
T Consensus         2 ~~l~v~d~~~a~~FY~~~lg~~~~~~~~----~-----~--~~~~~~-~~~~~~l~~~~~---~~~------~~~~~~~~   60 (114)
T cd07261           2 VLLYVEDPAASAEFYSELLGREPVELSP----T-----F--ALFVLG-SGVKLGLWSRHT---VEP------ASDATGGG   60 (114)
T ss_pred             EEEEECCHHHHHHHHHHHcCCCccCCCC----c-----e--EEEEeC-CCcEEEEeeccc---cCC------CCCCCCCc
Confidence            5688999999999999999999764311    0     1  112222 234555544321   010      00123568


Q ss_pred             eEEEEEeCC---HHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEEEEc
Q 013898          292 QHLALVSED---IFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFT  367 (434)
Q Consensus       292 qHIAf~vdD---I~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llqifT  367 (434)
                      +|++|.++|   ++++++++++.    |+++... |...        +       +    . ..++-+|++|..+.+||
T Consensus        61 ~~~~~~v~~~~~~~~~~~~~~~~----g~~v~~~-~~~~--------~-------~----g-~~~~~~DPdGn~ie~~~  114 (114)
T cd07261          61 SELAFMVDDGAAVDALYAEWQAK----GVKIIQE-PTEM--------D-------F----G-YTFVALDPDGHRLRVFA  114 (114)
T ss_pred             eEEEEEcCCHHHHHHHHHHHHHC----CCeEecC-cccc--------C-------C----c-cEEEEECCCCCEEEeeC
Confidence            999999986   88889999998    9998853 3220        1       1    1 13467889999999986

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.

>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=98.23  E-value=7.8e-06  Score=68.90  Aligned_cols=102  Identities=18%  Similarity=0.101  Sum_probs=64.0

Q ss_pred             EecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcCCCCceE
Q 013898          214 GNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQH  293 (434)
Q Consensus       214 i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G~GvqH  293 (434)
                      +.|.|++++++||++ |||+..+..+  .       .  ..+..  +...+.|.....   ..           ..+-.|
T Consensus         7 l~v~Dl~~s~~FY~~-LGf~~~~~~~--~-------~--~~l~~--~~~~l~l~~~~~---~~-----------~~~~~~   58 (113)
T cd08356           7 IPAKDFAESKQFYQA-LGFELEWEND--N-------L--AYFRL--GNCAFYLQDYYV---KD-----------WAENSM   58 (113)
T ss_pred             cccccHHHHHHHHHH-hCCeeEecCC--C-------E--EEEEc--CCEEEEeecCCC---cc-----------cccCCE
Confidence            556799999999987 9999876421  1       1  22333  334454433210   11           122348


Q ss_pred             EEEEeCCHHHHHHHHHHhcCCCCceeccC----CCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEEEE
Q 013898          294 LALVSEDIFRTLREMRKRSGVGGFEFMPS----PPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIF  366 (434)
Q Consensus       294 IAf~vdDI~~av~~L~~~~~~~Gv~fl~~----pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llqif  366 (434)
                      ++|.|+||++++++|+++    |+++...    +|..                   .-.....++-+|++|+++.+.
T Consensus        59 ~~~~v~did~~~~~l~~~----G~~~~~~~~~~~~~~-------------------~~~g~r~f~~~DPdGn~~~~~  112 (113)
T cd08356          59 LHLEVDDLEAYYEHIKAL----GLPKKFPGVKLPPIT-------------------QPWWGREFFLHDPSGVLWHIG  112 (113)
T ss_pred             EEEEECCHHHHHHHHHHc----CCcccccceecCccc-------------------cCCCcEEEEEECCCccEEEee
Confidence            999999999999999999    9876431    1111                   001223567788999998864

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.

>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=98.16  E-value=1.9e-05  Score=66.11  Aligned_cols=107  Identities=18%  Similarity=0.243  Sum_probs=65.1

Q ss_pred             EEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCChhHHh
Q 013898           36 VEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHAACR  115 (434)
Q Consensus        36 I~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (434)
                      |.|.|+|++++.+||++.|||++..+..  .     ....++.++..+.+........         ....        .
T Consensus         2 i~l~v~d~~~a~~FY~~~lg~~~~~~~~--~-----~~~~~~~~~~~~~l~~~~~~~~---------~~~~--------~   57 (121)
T cd07251           2 ITLGVADLARSRAFYEALLGWKPSADSN--D-----GVAFFQLGGLVLALFPREELAK---------DAGV--------P   57 (121)
T ss_pred             eeEeeCCHHHHHHHHHHhcCceecccCC--C-----ceEEEEcCCeEEEEecchhhhh---------hcCC--------C
Confidence            7899999999999999999999876511  1     2344555776666654211000         0000        0


Q ss_pred             HHHHhcCCceeEEEEEe---cCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEeec
Q 013898          116 SFAASHGLAARSIAVEV---EDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSY  178 (434)
Q Consensus       116 ~~l~~hG~gv~~Iaf~V---~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd~  178 (434)
                      .  ...+.+-.+++|.+   +|++++++++.+.|+++..+|...          ++|+...++.|+
T Consensus        58 ~--~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~G~~~~~~~~~~----------~~g~~~~~~~DP  111 (121)
T cd07251          58 V--PPPGFSGITLAHNVRSEEEVDAVLARAAAAGATIVKPPQDV----------FWGGYSGYFADP  111 (121)
T ss_pred             C--CCCCccceEEEEEcCCHHHHHHHHHHHHhCCCEEecCCccC----------CCCceEEEEECC
Confidence            0  00111223466554   689999999999999876665432          245556666663

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.

>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A

Probab=98.13  E-value=1.8e-05  Score=65.08  Aligned_cols=108  Identities=17%  Similarity=0.162  Sum_probs=64.7

Q ss_pred             EecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcCCCCceE
Q 013898          214 GNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQH  293 (434)
Q Consensus       214 i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G~GvqH  293 (434)
                      |.|+|++++++||+++|||+......  ..    ..+.. ......+...+.-..+.              .....+..|
T Consensus         1 l~v~d~~~a~~FY~~~lg~~~~~~~~--~~----~~~~~-~~~~~~~~~~~~~~~~~--------------~~~~~~~~~   59 (108)
T PF12681_consen    1 LPVSDLEAAAAFYEDVLGFEVVFDDP--DY----VDFSL-GFRFHDGVIEFLQFPDP--------------PGPPGGGFH   59 (108)
T ss_dssp             EEESSHHHHHHHHHHTTTSEEEEEET--SE----EEEEE-TEEEEEEEEEEEEEESS--------------SSSSSSEEE
T ss_pred             CccCCHHHHHHHHHHhcCCEEEEeCC--Ce----EEEEe-ccchhhhhHHHccCCcc--------------ccCCCceeE
Confidence            57899999999999999999887422  10    00100 00000011111111111              113467899


Q ss_pred             EEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEEEE
Q 013898          294 LALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIF  366 (434)
Q Consensus       294 IAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llqif  366 (434)
                      ++|.|+|++++.++++++    |++++..| .....                   .....+-.|++|++++++
T Consensus        60 ~~~~v~dv~~~~~~l~~~----G~~~~~~~-~~~~~-------------------g~~~~~~~DPdG~~ie~~  108 (108)
T PF12681_consen   60 LCFEVEDVDALYERLKEL----GAEIVTEP-RDDPW-------------------GQRSFYFIDPDGNRIEFC  108 (108)
T ss_dssp             EEEEESHHHHHHHHHHHT----TSEEEEEE-EEETT-------------------SEEEEEEE-TTS-EEEEE
T ss_pred             EEEEEcCHHHHHHHHHHC----CCeEeeCC-EEcCC-------------------CeEEEEEECCCCCEEEeC
Confidence            999999999999999999    99988643 44100                   112445677888888764

...

>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm

Probab=98.12  E-value=4.2e-05  Score=63.13  Aligned_cols=81  Identities=16%  Similarity=0.141  Sum_probs=56.5

Q ss_pred             eEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcCCCCce
Q 013898          213 VGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQ  292 (434)
Q Consensus       213 ~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G~Gvq  292 (434)
                      .+.|+|++++++||+++|||+......  +.      . ..++..  +...+.|.+...   ....        ...+..
T Consensus         3 ~i~v~d~~~s~~FY~~~lg~~~~~~~~--~~------~-~~~~~~--~~~~~~l~~~~~---~~~~--------~~~~~~   60 (112)
T cd08349           3 VLPVSDIERSLAFYRDVLGFEVDWEHP--EP------G-YAFLSR--GGAQLMLSEHDG---DEPV--------PLGRGG   60 (112)
T ss_pred             EEEECCHHHHHHHHHhccCeEEEEEcC--CC------c-EEEEEe--CCEEEEEeccCC---CCCC--------CCCCcE
Confidence            478999999999999999999876532  00      1 122332  346677765431   1100        235566


Q ss_pred             EEEEEeCCHHHHHHHHHHhcCCCCcee
Q 013898          293 HLALVSEDIFRTLREMRKRSGVGGFEF  319 (434)
Q Consensus       293 HIAf~vdDI~~av~~L~~~~~~~Gv~f  319 (434)
                      |++|.++|++++.+++++.    |+.+
T Consensus        61 ~~~~~~~~~~~~~~~l~~~----G~~~   83 (112)
T cd08349          61 SVYIEVEDVDALYAELKAK----GADL   83 (112)
T ss_pred             EEEEEeCCHHHHHHHHHHc----CCcc
Confidence            9999999999999999999    9883

BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large

>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A

Probab=98.08  E-value=7.3e-06  Score=72.01  Aligned_cols=98  Identities=15%  Similarity=0.205  Sum_probs=73.9

Q ss_pred             ccceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHH
Q 013898          203 DYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTY  282 (434)
Q Consensus       203 ~~~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~f  282 (434)
                      +.++.++|||-+.+++-++...|+ +.|||+...+-..         ..+.+++  .|.|+|.||..     +.|.+.+|
T Consensus         4 P~g~~G~dFvEFa~~~~~~l~~~~-~~lGF~~~a~hrs---------k~v~l~r--QG~I~~vln~e-----p~s~a~~~   66 (139)
T PF14696_consen    4 PLGLDGFDFVEFAVPDAQALAQLF-TALGFQPVARHRS---------KDVTLYR--QGDINFVLNSE-----PDSFAAEF   66 (139)
T ss_dssp             TT-EEEEEEEEEE-SSTTSCHHHH-CCCCEEEECCECC---------CSEEEEE--ETTEEEEEEEE-----STSCHHHH
T ss_pred             CCCCCCeEEEEEecCCHHHHHHHH-HHhCcceEEecCC---------cceEEEE--eCCEEEEEeCC-----CcchHHHH
Confidence            468999999999999977777777 6799998765321         1122333  36799999985     46789999


Q ss_pred             HhhcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccC
Q 013898          283 LEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPS  322 (434)
Q Consensus       283 l~~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~  322 (434)
                      ...| |+||--|||+|+|..+++++..++    |.+.+..
T Consensus        67 ~~~H-G~sv~aiafrV~Da~~A~~rA~~~----GA~~~~~  101 (139)
T PF14696_consen   67 AAQH-GPSVCAIAFRVDDAAAAYERAVAL----GAEPVQE  101 (139)
T ss_dssp             HHHH-SSEEEEEEEEES-HHHHHHHHHHT----T--EEEE
T ss_pred             HHhc-CCEEEEEEEEeCCHHHHHHHHHHc----CCcCccc
Confidence            9884 999999999999999999999999    9887754

>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins

Probab=98.08  E-value=3.6e-05  Score=65.12  Aligned_cols=79  Identities=15%  Similarity=0.056  Sum_probs=52.3

Q ss_pred             eeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcCCCCc
Q 013898          212 AVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGV  291 (434)
Q Consensus       212 v~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G~Gv  291 (434)
                      ..+.|.|++++++||++ |||+..+...  +      +.  ..+..  +...+.|.....   ..          ....-
T Consensus         6 ~~l~v~Dl~~s~~FY~~-lG~~~~~~~~--~------~~--~~~~~--~~~~l~l~~~~~---~~----------~~~~~   59 (120)
T cd08350           6 PNLPSRDLDATEAFYAR-LGFSVGYRQA--A------GY--MILRR--GDLELHFFAHPD---LD----------PATSP   59 (120)
T ss_pred             ceeEcCCHHHHHHHHHH-cCCEEEecCC--C------CE--EEEEc--CCEEEEEEecCc---CC----------CCCCc
Confidence            46778899999999999 9999875431  0      11  12232  234555543210   00          11223


Q ss_pred             eEEEEEeCCHHHHHHHHHHhcCCCCceec
Q 013898          292 QHLALVSEDIFRTLREMRKRSGVGGFEFM  320 (434)
Q Consensus       292 qHIAf~vdDI~~av~~L~~~~~~~Gv~fl  320 (434)
                      -|++|.|+||++.+++|+++    |+.+.
T Consensus        60 ~~~~~~v~dvd~~~~~l~~~----G~~~~   84 (120)
T cd08350          60 FGCCLRLPDVAALHAEFRAA----GLPET   84 (120)
T ss_pred             ceEEEEeCCHHHHHHHHHHh----Ccccc
Confidence            58999999999999999999    98754

BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.

>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=98.03  E-value=1.3e-05  Score=67.14  Aligned_cols=116  Identities=15%  Similarity=0.080  Sum_probs=67.6

Q ss_pred             eeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcCCCCc
Q 013898          212 AVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGV  291 (434)
Q Consensus       212 v~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G~Gv  291 (434)
                      |.+.|+|++++.+||+++|||++....   ..       ...++..  +...+.+.....   ...... ......+.+-
T Consensus         2 i~l~v~d~~~a~~FY~~~lg~~~~~~~---~~-------~~~~~~~--~~~~~~l~~~~~---~~~~~~-~~~~~~~~~~   65 (121)
T cd07251           2 ITLGVADLARSRAFYEALLGWKPSADS---ND-------GVAFFQL--GGLVLALFPREE---LAKDAG-VPVPPPGFSG   65 (121)
T ss_pred             eeEeeCCHHHHHHHHHHhcCceecccC---CC-------ceEEEEc--CCeEEEEecchh---hhhhcC-CCCCCCCccc
Confidence            678999999999999999999976541   11       0122333  235555543210   000000 0000112233


Q ss_pred             eEEEE---EeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEEEEc
Q 013898          292 QHLAL---VSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFT  367 (434)
Q Consensus       292 qHIAf---~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llqifT  367 (434)
                      .|++|   .++|++++++++++.    |++++.. |...+.                   .....+-+|++|+++++++
T Consensus        66 ~~~~~~~~~~~d~~~~~~~l~~~----G~~~~~~-~~~~~~-------------------g~~~~~~~DP~Gn~iei~~  120 (121)
T cd07251          66 ITLAHNVRSEEEVDAVLARAAAA----GATIVKP-PQDVFW-------------------GGYSGYFADPDGHLWEVAH  120 (121)
T ss_pred             eEEEEEcCCHHHHHHHHHHHHhC----CCEEecC-CccCCC-------------------CceEEEEECCCCCEEEEee
Confidence            34555   457899999999999    9998853 332110                   0123466888999999986

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.

>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B

Probab=97.91  E-value=2.1e-05  Score=71.79  Aligned_cols=98  Identities=21%  Similarity=0.231  Sum_probs=52.6

Q ss_pred             eeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHH---hh
Q 013898          209 LDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYL---EH  285 (434)
Q Consensus       209 iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl---~~  285 (434)
                      |||+.+.|+|+++++++|++.|||++.........     |.....+..+++  .|+|...... .......++.   ..
T Consensus         1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~-----GT~N~li~f~~~--YlEli~i~~~-~~~~~~~~~~~~~~~   72 (175)
T PF13468_consen    1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGW-----GTANALIPFGDG--YLELIAIDPE-APAPDRGRWFGLDRL   72 (175)
T ss_dssp             EEEEEEE-TTGGG----GGGS--S--EEEEE-TTT------EEEEEEE-SSS--EEEEEEES-H-HHSTGGGT-TTTHHH
T ss_pred             CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCCCC-----ccEEEEEeeCCc--eEEEEEeCCc-ccccccccceechhh
Confidence            79999999999999999999999998865432211     234444444554  6666554211 0111111111   11


Q ss_pred             cCCCCceEEEEEeCCHHHHHHHHHHhcCCCCce
Q 013898          286 NEGAGVQHLALVSEDIFRTLREMRKRSGVGGFE  318 (434)
Q Consensus       286 ~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~  318 (434)
                      ..+.|+.++||.|+|+.++.++|+++    |++
T Consensus        73 ~~~~g~~~~~l~t~d~~~~~~~l~~~----G~~  101 (175)
T PF13468_consen   73 AGGEGLYGWALRTDDIEAVAARLRAA----GLD  101 (175)
T ss_dssp             HT--EEEEEEEE-S-HHHHHHHHHTT----T-E
T ss_pred             cCCCCeEEEEEecCCHHHHHHHHHhc----CCC
Confidence            25899999999999999999999999    976

>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]

Probab=97.83  E-value=0.00011  Score=64.81  Aligned_cols=103  Identities=13%  Similarity=0.141  Sum_probs=62.3

Q ss_pred             cceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCC
Q 013898           30 VNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTF  109 (434)
Q Consensus        30 i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~  109 (434)
                      +.++.|+.+.+++..+.+.||...||++......  ...+... ..+-.....++|+-+...+.                
T Consensus        40 ytr~~gm~l~~~~~fke~~Fsl~fL~~~~~~~vP--~~~~~~~-v~~~~~~~~~ELthn~Gtes----------------  100 (170)
T KOG2944|consen   40 YTRVNGMALLVPDDFKEAKFSLYFLGAEVSEDVP--KPEHGVS-VFVFSRNAKLELTHNWGTES----------------  100 (170)
T ss_pred             hhhhccceeechhhhhHhhhHHHhhcccccccCc--cCCCCCc-eEEecccCceeeecCCCCCC----------------
Confidence            4566667777777777777777777775332211  1111112 33333555666666544331                


Q ss_pred             ChhHH-hHHHH-hcCC-ceeEEEEEecCHHHHHHHHHHcCCCCCCCCc
Q 013898          110 DHAAC-RSFAA-SHGL-AARSIAVEVEDADVAFNTSVAHGAKPSSPPV  154 (434)
Q Consensus       110 ~~~~~-~~~l~-~hG~-gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~  154 (434)
                         .. +.|+. .|-+ |..||||.|+|+++++++++++|++....|.
T Consensus       101 ---~~~~~~~ngN~~prGfgHIci~V~di~sac~~lkekGV~f~Kk~~  145 (170)
T KOG2944|consen  101 ---PPDQAYLNGNKEPRGFGHICIEVDDINSACERLKEKGVRFKKKLK  145 (170)
T ss_pred             ---CcchhhcCCCCCCCccceEEEEeCCHHHHHHHHHHhCceeeecCC
Confidence               11 23332 2334 8999999999999999999999999544453

>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E

Probab=97.81  E-value=0.00056  Score=58.88  Aligned_cols=105  Identities=14%  Similarity=0.095  Sum_probs=68.7

Q ss_pred             EEEe-CCHHHHHHHHHHhcCCcEEEEecCCC--------CceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCC
Q 013898           37 EFWC-TDATNTARRFSWGLGMPIVAKSDLST--------GNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLP  107 (434)
Q Consensus        37 ~~~V-~da~~a~~fy~~~lGf~~v~~~~~~~--------g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~  107 (434)
                      -|++ .|+++|++||+++||+++......+.        .........++.++..|++.+.....               
T Consensus         4 ~L~~~~~~~eAi~FY~~~fg~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i~g~~l~~~d~~~~~---------------   68 (128)
T cd06588           4 YLWFNGNAEEALEFYQSVFGGEITSLTRYGEGPPPDPEEPEGKVMHAELTIGGQRLMASDGGPGF---------------   68 (128)
T ss_pred             EEeeCCCHHHHHHHHHHHhCCEeEEEEEcCCCCCCCCCCcCCcEEEEEEEECCEEEEEEcCCCCC---------------
Confidence            4667 99999999999999999887653111        11123456677788888887632110               


Q ss_pred             CCChhHHhHHHHhcCCceeEEEEEecC---HHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEeec
Q 013898          108 TFDHAACRSFAASHGLAARSIAVEVED---ADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSY  178 (434)
Q Consensus       108 ~~~~~~~~~~l~~hG~gv~~Iaf~V~D---vd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd~  178 (434)
                          . .     . +.+...+++.|+|   ++++++++.+.| +++.+|...          +||+..-.+.|+
T Consensus        69 ----~-~-----~-~~~~~~l~i~~~~~e~v~~~~~~l~~~g-~~~~~~~~~----------~~g~~~~~v~Dp  120 (128)
T cd06588          69 ----P-F-----T-FGNGISLSVECDSEEEADRLFEALSEGG-TVLMPLQKT----------FWSPLFGWVTDR  120 (128)
T ss_pred             ----C-C-----C-CCCCEEEEEECCCHHHHHHHHHHHhcCC-eEeccchhc----------CcccccEEEECC
Confidence                0 0     1 1223478999886   778888876655 666666443          467767777774

coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to

>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.76  E-value=0.00051  Score=60.20  Aligned_cols=107  Identities=18%  Similarity=0.190  Sum_probs=74.1

Q ss_pred             EEEeC-CHHHHHHHHHHhcCCcEEEEecCCCC--------ceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCC
Q 013898           37 EFWCT-DATNTARRFSWGLGMPIVAKSDLSTG--------NTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLP  107 (434)
Q Consensus        37 ~~~V~-da~~a~~fy~~~lGf~~v~~~~~~~g--------~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~  107 (434)
                      -|.+. |+++|++||+++||++...+....+.        ........++.|+..|+++.......              
T Consensus         5 Yl~f~gn~~~Al~fY~~vFgae~~~~~~~~d~~~~~~~~~~~~i~HA~l~i~g~~im~sd~~~~~~--------------   70 (136)
T COG2764           5 YLFFNGNAREALAFYKEVFGAEELKRVPFGDMPSSAGEPPGGRIMHAELRIGGSTIMLSDAFPDMG--------------   70 (136)
T ss_pred             EEEECCCHHHHHHHHHHHhCceEEEEEEcCccCccccccccCceEEEEEEECCEEEEEecCCCccC--------------
Confidence            35667 99999999999999998876542220        01234456677888888876432110              


Q ss_pred             CCChhHHhHHHHhcCC-ceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEeec
Q 013898          108 TFDHAACRSFAASHGL-AARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSY  178 (434)
Q Consensus       108 ~~~~~~~~~~l~~hG~-gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd~  178 (434)
                                 ...+. .-..|-+.++|+++++++|.+.|++++.++...          .||+..-.++|+
T Consensus        71 -----------~~~~~~~s~~l~~~~~d~da~f~~a~~aGa~v~mpl~~~----------fwG~r~G~v~D~  121 (136)
T COG2764          71 -----------ATEGGGTSLSLDLYVEDVDAVFERAAAAGATVVMPLEDT----------FWGDRYGQVTDP  121 (136)
T ss_pred             -----------cccCCCeeEEEEEEehHHHHHHHHHHhcCCeEEecchhc----------CcccceEEEECC
Confidence                       01222 223677888899999999999999887776543          478887788875

>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]

Probab=97.56  E-value=0.00012  Score=61.01  Aligned_cols=32  Identities=16%  Similarity=0.371  Sum_probs=29.2

Q ss_pred             eeeeeeEecCCHHHHHHHHHHhhCCeeeeeee
Q 013898          208 RLDHAVGNVPELAPAVAYVKSFTGFHEFAEFT  239 (434)
Q Consensus       208 ~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~  239 (434)
                      +++||++.|+|++++++||+++|||+......
T Consensus         2 ~l~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~   33 (138)
T COG0346           2 GIHHVTLAVPDLEASIDFYTDVLGLRLVKDTV   33 (138)
T ss_pred             ceEEEEEeeCCHhHhHHHHHhhcCCeeeeecc
Confidence            68999999999999999999999999887543

>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]

Probab=97.36  E-value=0.0041  Score=53.75  Aligned_cols=93  Identities=17%  Similarity=0.125  Sum_probs=60.7

Q ss_pred             ceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCC---EEEEEEcCCCCCCCcccccCCCCCCCC
Q 013898           31 NRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGD---LRFVFTAPYSPSISDAADAGNSSASLP  107 (434)
Q Consensus        31 ~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~---i~~vl~~p~~~~~~~~~~~~~~~~~~~  107 (434)
                      ..+-|.++.|+|++++.+||.++||.+.......  +  ......+..++   .-++ ..+..                 
T Consensus         8 ~~i~w~Ei~~~D~~ra~~FY~~vFgW~~~~~~~~--~--~~~y~~f~~~~~~~gG~l-~~~~~-----------------   65 (127)
T COG3324           8 GTIVWFELPVSDLERAKAFYEKVFGWTFEDYFDM--G--EMRYAVFPADGAGAGGGL-MARPG-----------------   65 (127)
T ss_pred             CccEEEeeecCCHHHHHHHHHHhhCceecccccC--C--CceEEEEECCCcccccee-ccCCc-----------------
Confidence            4678999999999999999999999998766432  1  02333333222   0011 01000                 


Q ss_pred             CCChhHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccc
Q 013898          108 TFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVIL  156 (434)
Q Consensus       108 ~~~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~  156 (434)
                               +  ..+.+-..+=|.|+|++++.+|+++.|.+++.+++..
T Consensus        66 ---------~--~p~~~~~~iy~~v~did~~l~rv~~~GG~V~~p~~~~  103 (127)
T COG3324          66 ---------S--PPGGGGWVIYFAVDDIDATLERVVAAGGKVLRPKTEF  103 (127)
T ss_pred             ---------C--CCCCCCEEEEEecCChHHHHHHHHhcCCeEEeccccc
Confidence                     0  0112223566679999999999999999988887665

>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]

Probab=97.31  E-value=0.0026  Score=61.23  Aligned_cols=90  Identities=20%  Similarity=0.284  Sum_probs=61.8

Q ss_pred             eeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhh
Q 013898          206 IRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEH  285 (434)
Q Consensus       206 l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~  285 (434)
                      -..++-++++|.|++.+..||++++|+++..+.+           .+.++..+ +...+.|.+-..+  +.      . .
T Consensus         8 ~~~v~~v~L~vrdL~~~~~FY~~ilGL~v~~~~~-----------~~v~L~vg-g~~LL~L~q~~~a--~~------~-~   66 (265)
T COG2514           8 PTFVGAVTLNVRDLDSMTSFYQEILGLQVLEETD-----------GSVTLGVG-GTPLLTLEQFPDA--RR------P-P   66 (265)
T ss_pred             CcEEEEEEEEeccHHHHHHHHHHhhCCeeeeccC-----------ceEEEeeC-CEEEEEEEeCCCC--CC------C-C
Confidence            3578899999999999999999999999986532           23444433 3345555542211  11      0 1


Q ss_pred             cCCCCceEEEEEeCC---HHHHHHHHHHhcCCCCceec
Q 013898          286 NEGAGVQHLALVSED---IFRTLREMRKRSGVGGFEFM  320 (434)
Q Consensus       286 ~~G~GvqHIAf~vdD---I~~av~~L~~~~~~~Gv~fl  320 (434)
                      .+..|+=|+||.+++   +.+.+.++.+.    |+.+.
T Consensus        67 ~~~aGLyH~AfLlP~r~~L~~~l~hl~~~----~~~l~  100 (265)
T COG2514          67 PRAAGLYHTAFLLPTREDLARVLNHLAEE----GIPLV  100 (265)
T ss_pred             ccccceeeeeeecCCHHHHHHHHHHHHhc----CCccc
Confidence            256899999999996   55566777777    76655

>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]

Probab=97.10  E-value=0.00098  Score=62.68  Aligned_cols=119  Identities=20%  Similarity=0.260  Sum_probs=78.1

Q ss_pred             ceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeeccc-----CcccccCceEEEEE--cC-CCc--eEEEecccCCCCC
Q 013898          205 GIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAED-----VGTSESGLNSVVLA--NN-DEM--VLLPMNEPVFGTK  274 (434)
Q Consensus       205 ~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d-----~~~~~~g~~s~~l~--~~-~g~--v~i~L~e~~~g~~  274 (434)
                      .-+++-|+++.|.|+++++.||+++||+++.+-.+.+.     -.+.+.+-.|..|.  .| +..  +.|+.|-+..   
T Consensus        14 ~~~r~LH~VfkVgdr~kti~Fyt~vlgMkvLRheef~egc~aacngpyd~kwSktmvGyGpEdshFViELTYNYgV~---   90 (299)
T KOG2943|consen   14 DTRRALHYVFKVGDRAKTIDFYTEVLGMKVLRHEEFEEGCEAACNGPYDGKWSKTMVGYGPEDSHFVIELTYNYGVS---   90 (299)
T ss_pred             cchheeeEeEeecchHHHHHHHHHhhcceeeehhhhhhhhhhhcCCCcccchhhhheecCCCcccEEEEEEeccCcc---
Confidence            34677899999999999999999999999875322111     01234444554442  12 222  4445555531   


Q ss_pred             CCchHHHHHhhcCCCCceEEEEEeCCHHHHHHHHHHh---cCCCCceeccCCCchhhHhHhhhcC
Q 013898          275 RKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKR---SGVGGFEFMPSPPPTYYKNLKNRAG  336 (434)
Q Consensus       275 ~~s~i~~fl~~~~G~GvqHIAf~vdDI~~av~~L~~~---~~~~Gv~fl~~pP~~YY~~l~~R~~  336 (434)
                               ++.-|.+.-||++.++|+...++.++..   ..+.|+.++.. |+.|-=.|..|.+
T Consensus        91 ---------~YelGndfg~i~I~s~dv~~~ve~v~~p~~~~~g~~~~~v~d-PdGykF~l~~~~p  145 (299)
T KOG2943|consen   91 ---------KYELGNDFGGITIASDDVFSKVEKVNAPGGKGSGCGIAFVKD-PDGYKFYLIDRGP  145 (299)
T ss_pred             ---------ceeccCCcccEEEeHHHHHHHHHHhcCcCCcccceEEEEEEC-CCCcEEEEeccCC
Confidence                     1224788999999999999999999983   23345778876 4877544544443

>COG3607 Predicted lactoylglutathione lyase [General function prediction only]

Probab=97.00  E-value=0.01  Score=50.62  Aligned_cols=116  Identities=13%  Similarity=0.171  Sum_probs=74.0

Q ss_pred             eEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCCh
Q 013898           32 RFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDH  111 (434)
Q Consensus        32 ~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~  111 (434)
                      ..=+|-|-|.|++++.+||. .|||+.-..--     -...+..+..++|.++|.+...                     
T Consensus         3 ~mIFvNLPVkDL~~S~~Fy~-alGfk~Npq~s-----de~a~~mi~~~ni~vMLL~~~~---------------------   55 (133)
T COG3607           3 QMIFVNLPVKDLEASKAFYT-ALGFKFNPQFS-----DEDAACMIISDNIFVMLLEEAR---------------------   55 (133)
T ss_pred             eEEEEecchhhHHHHHHHHH-HhCcccCCCcc-----cccceeEEEeccEEEEEeccHH---------------------
Confidence            34578899999999999998 88998653211     1234566667888888776211                     


Q ss_pred             hHHhHHHH-----hcCCceeEEEEEecC---HHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEee
Q 013898          112 AACRSFAA-----SHGLAARSIAVEVED---ADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVS  177 (434)
Q Consensus       112 ~~~~~~l~-----~hG~gv~~Iaf~V~D---vd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd  177 (434)
                        .+.|.+     ...+.=.-|||.+.+   +++..+++.+.|+++..+|... +.+.-..++.++|.+..|+-
T Consensus        56 --fq~F~~~~i~dt~~s~evli~ls~~s~eevd~~v~ka~eaGGk~~~~~~d~-gfMYg~~fqDpDGh~wE~l~  126 (133)
T COG3607          56 --FQTFTKRQIADTTKSREVLISLSAGSREEVDELVDKALEAGGKPANEPQDE-GFMYGRSFQDPDGHVWEFLW  126 (133)
T ss_pred             --hhhhcccccccccCCceEEEEeccCcHHHHHHHHHHHHHcCCCCCCCcccc-ccccceeeeCCCCCeEEEEE
Confidence              122221     122333357888774   8999999999999987776543 33323334555665555553

>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]

Probab=96.74  E-value=0.0069  Score=50.85  Aligned_cols=119  Identities=19%  Similarity=0.193  Sum_probs=71.2

Q ss_pred             eeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEc-CCCceEEEecccCCCCCCCchHHHHHhhcC
Q 013898          209 LDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLAN-NDEMVLLPMNEPVFGTKRKSQIQTYLEHNE  287 (434)
Q Consensus       209 iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~-~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~  287 (434)
                      +=|+++-|.|++++..||.++||++...+.+            .++..+ -...+...+.-+.. +.+.+.    ++. .
T Consensus         5 ~FHLA~pV~Dl~~tr~FYgevlG~~~GRstd------------~wvdfDfyGHQ~v~Hl~~q~~-~~~~g~----V~~-~   66 (138)
T COG3565           5 PFHLAIPVNDLDETRRFYGEVLGCKEGRSTD------------TWVDFDFYGHQVVAHLTPQPD-SQGSGK----VDG-H   66 (138)
T ss_pred             ceEEeeeccccHHHHhhhhhhcccccccccc------------eEEEeeecccEEEEEecCCcc-cccCcc----cCC-C
Confidence            4499999999999999999999998765422            111111 01123333322210 011111    111 1


Q ss_pred             CCCceEEE--EEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEEE
Q 013898          288 GAGVQHLA--LVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQI  365 (434)
Q Consensus       288 G~GvqHIA--f~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llqi  365 (434)
                      +--+-|..  |.++|-.+..++|.++    |+.+. +||.-       |+...        .-++.-|+-+|+.|..|.+
T Consensus        67 ~v~~pHfGvVl~~edW~alaerlea~----gi~~~-i~P~v-------RF~Ge--------~gEq~TlFl~DP~gN~lEf  126 (138)
T COG3565          67 GVPPPHFGVVLPVEDWFALAERLEAA----GIPFH-IPPKV-------RFKGE--------PGEQRTLFLFDPSGNALEF  126 (138)
T ss_pred             CCCCccceEEEEHHHHHHHHHHHHHc----CCCcc-cCceE-------EecCC--------ccceEEEEEECCCCCeeee
Confidence            22266755  5778999999999999    99998 45533       44311        2355667778887776654

>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]

Probab=96.46  E-value=0.031  Score=48.33  Aligned_cols=91  Identities=16%  Similarity=0.118  Sum_probs=56.6

Q ss_pred             eeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhc
Q 013898          207 RRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHN  286 (434)
Q Consensus       207 ~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~  286 (434)
                      -.+-|.-|.+.|++++.+||+++||.+....++.   .    .....+........-=-+...      .       ..-
T Consensus         8 ~~i~w~Ei~~~D~~ra~~FY~~vFgW~~~~~~~~---~----~~~y~~f~~~~~~~gG~l~~~------~-------~~~   67 (127)
T COG3324           8 GTIVWFELPVSDLERAKAFYEKVFGWTFEDYFDM---G----EMRYAVFPADGAGAGGGLMAR------P-------GSP   67 (127)
T ss_pred             CccEEEeeecCCHHHHHHHHHHhhCceecccccC---C----CceEEEEECCCccccceeccC------C-------cCC
Confidence            3577999999999999999999999998765431   1    022222211110000000000      0       001


Q ss_pred             CCCCceEEEEEeCCHHHHHHHHHHhcCCCCceecc
Q 013898          287 EGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMP  321 (434)
Q Consensus       287 ~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~  321 (434)
                      .+.+--+|=|.|+||++++++..++    |-+++.
T Consensus        68 p~~~~~~iy~~v~did~~l~rv~~~----GG~V~~   98 (127)
T COG3324          68 PGGGGWVIYFAVDDIDATLERVVAA----GGKVLR   98 (127)
T ss_pred             CCCCCEEEEEecCChHHHHHHHHhc----CCeEEe
Confidence            2234667778899999999999999    778885

>PRK10148 hypothetical protein; Provisional

Probab=96.38  E-value=0.14  Score=45.50  Aligned_cols=104  Identities=12%  Similarity=0.149  Sum_probs=63.1

Q ss_pred             EEEe-CCHHHHHHHHHHhcCCcEEEEec---C-----------CCC----ceeEEEEEEEeCCEEEEEEcCCCCCCCccc
Q 013898           37 EFWC-TDATNTARRFSWGLGMPIVAKSD---L-----------STG----NTVHASYLLRSGDLRFVFTAPYSPSISDAA   97 (434)
Q Consensus        37 ~~~V-~da~~a~~fy~~~lGf~~v~~~~---~-----------~~g----~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~   97 (434)
                      -|.. .|+++|++||+++||.++.....   .           +.+    ...+....++.|+..|+++......     
T Consensus         6 yL~f~g~a~eAi~FY~~~Fgae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ha~l~i~g~~lm~sD~~~~~-----   80 (147)
T PRK10148          6 YLSFAGNCADAIAYYQQTLGAELLYKISFGEMPKSAQDSEEGCPSGMQFPDTAIAHANVRIAGSDIMMSDAIPSG-----   80 (147)
T ss_pred             EEEeCCCHHHHHHHHHHHhCCEEEEEEEcccCCccccccccCCCccccCcCCcEEEEEEEECCEEEEEECCCCCc-----
Confidence            3445 48999999999999998765421   0           110    1123456667788888886521100     


Q ss_pred             ccCCCCCCCCCCChhHHhHHHHhcCCceeEEEEEecCHHH---HHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEE
Q 013898           98 DAGNSSASLPTFDHAACRSFAASHGLAARSIAVEVEDADV---AFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLR  174 (434)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~---a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~  174 (434)
                                           ..++. -..|.+.++|+++   +++ +.+.|++++.++...          .||...-.
T Consensus        81 ---------------------~~~~~-~~~l~l~~~d~ee~~~~~~-aLa~gg~v~mpl~~~----------~wg~~~g~  127 (147)
T PRK10148         81 ---------------------KAHYS-GFTLVLDTQDVEEGKRWFD-NLAANGKIEMAWQET----------FWAHGFGK  127 (147)
T ss_pred             ---------------------CCCCC-eEEEEEECCCHHHHHHHHH-HhhCCCEEEecchhc----------chhhccEE
Confidence                                 01122 3478888889876   444 456888877665443          35665556


Q ss_pred             Eeec
Q 013898          175 YVSY  178 (434)
Q Consensus       175 fvd~  178 (434)
                      ++|+
T Consensus       128 v~D~  131 (147)
T PRK10148        128 VTDK  131 (147)
T ss_pred             EECC
Confidence            6664

>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E

Probab=96.08  E-value=0.13  Score=43.98  Aligned_cols=90  Identities=11%  Similarity=-0.031  Sum_probs=50.3

Q ss_pred             Eec-CCHHHHHHHHHHhhCCeeeeeeecccCc-----ccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcC
Q 013898          214 GNV-PELAPAVAYVKSFTGFHEFAEFTAEDVG-----TSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNE  287 (434)
Q Consensus       214 i~V-~dl~~~~~fY~~vLGf~~~~~~~~~d~~-----~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~  287 (434)
                      +.+ .|.+++++||+++||++.......++..     .....+....+..  +...|.+......   .. .       .
T Consensus         5 L~~~~~~~eAi~FY~~~fg~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i--~g~~l~~~d~~~~---~~-~-------~   71 (128)
T cd06588           5 LWFNGNAEEALEFYQSVFGGEITSLTRYGEGPPPDPEEPEGKVMHAELTI--GGQRLMASDGGPG---FP-F-------T   71 (128)
T ss_pred             EeeCCCHHHHHHHHHHHhCCEeEEEEEcCCCCCCCCCCcCCcEEEEEEEE--CCEEEEEEcCCCC---CC-C-------C
Confidence            455 6999999999999999987654321110     0001122222232  2345555544211   10 0       1


Q ss_pred             CCCceEEEEEeCC---HHHHHHHHHHhcCCCCceecc
Q 013898          288 GAGVQHLALVSED---IFRTLREMRKRSGVGGFEFMP  321 (434)
Q Consensus       288 G~GvqHIAf~vdD---I~~av~~L~~~~~~~Gv~fl~  321 (434)
                      +.+-.++++.|+|   +++..++|++.    | +++.
T Consensus        72 ~~~~~~l~i~~~~~e~v~~~~~~l~~~----g-~~~~  103 (128)
T cd06588          72 FGNGISLSVECDSEEEADRLFEALSEG----G-TVLM  103 (128)
T ss_pred             CCCCEEEEEECCCHHHHHHHHHHHhcC----C-eEec
Confidence            2335589999997   56666777665    6 6664

coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to

>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]

Probab=95.89  E-value=0.01  Score=49.06  Aligned_cols=33  Identities=21%  Similarity=0.278  Sum_probs=30.1

Q ss_pred             ceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEec
Q 013898           31 NRFHHVEFWCTDATNTARRFSWGLGMPIVAKSD   63 (434)
Q Consensus        31 ~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~   63 (434)
                      ++++||.+.|+|++++.+||++.|||+.+....
T Consensus         1 ~~l~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~   33 (138)
T COG0346           1 MGIHHVTLAVPDLEASIDFYTDVLGLRLVKDTV   33 (138)
T ss_pred             CceEEEEEeeCCHhHhHHHHHhhcCCeeeeecc
Confidence            468999999999999999999999999988753

>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed

Probab=95.72  E-value=0.091  Score=52.82  Aligned_cols=84  Identities=12%  Similarity=0.046  Sum_probs=55.8

Q ss_pred             EEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCChh
Q 013898           33 FHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHA  112 (434)
Q Consensus        33 l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~  112 (434)
                      .=||.+.|.|++++.+||+..|||.. ...+       ... .+ ...+..++....  +                    
T Consensus       248 ~IfVNLpV~DL~rS~~FYt~LF~~n~-Fsde-------~a~-cm-~dtI~vMllt~~--D--------------------  295 (357)
T PRK01037        248 TFSVVLEVQDLRRAKKFYSKMFGLEC-WDGD-------KLF-LL-GKTSLYLQQTKA--E--------------------  295 (357)
T ss_pred             eEEEEeeeCCHHHHHHHHHHHhCCCC-CCCC-------ccc-cc-cCcEEEEEecCC--C--------------------
Confidence            44999999999999999999999985 3322       111 22 344444443311  1                    


Q ss_pred             HHhHHHHhcCCceeEEEEEecC---HHHHHHHHHHcCCCCCCCCcc
Q 013898          113 ACRSFAASHGLAARSIAVEVED---ADVAFNTSVAHGAKPSSPPVI  155 (434)
Q Consensus       113 ~~~~~l~~hG~gv~~Iaf~V~D---vd~a~~ra~~~Ga~~~~~p~~  155 (434)
                             .+...-.-+||.+++   +|+.+++|+++|++...+|..
T Consensus       296 -------~~~~~evLl~Ls~~Sre~VD~lv~~A~aaGG~~~~~~~D  334 (357)
T PRK01037        296 -------KKNRGTTTLSLELECEHDFVRFLRRWEMLGGELGEQADG  334 (357)
T ss_pred             -------CCCcceEEEEeccCCHHHHHHHHHHHHHcCCCCCCCccc
Confidence                   122233458888885   899999999999976555543

>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D

Probab=95.39  E-value=0.34  Score=41.27  Aligned_cols=83  Identities=16%  Similarity=0.161  Sum_probs=51.1

Q ss_pred             EEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCChhHH
Q 013898           35 HVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHAAC  114 (434)
Q Consensus        35 HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (434)
                      +-.+.|.|-+...+||++.|||++...++.      ..+.--+++..+|+|-+..+..+                     
T Consensus         3 ~PvlRVnnR~~ni~FY~~~LGfkll~EEna------~a~lg~~~~~erlvlEESP~~rt---------------------   55 (125)
T PF14506_consen    3 IPVLRVNNRDLNIDFYQKTLGFKLLSEENA------LAILGDQQKEERLVLEESPSMRT---------------------   55 (125)
T ss_dssp             EEEEEESSHHHHHHHHTTTT--EEEEEETT------EEEEE-TT--EEEEEEE--TTT----------------------
T ss_pred             CceEEEcCHHHhHHHHHhccCcEEeecccc------EEEecCCCCceEEEEecCCcccc---------------------
Confidence            457889999999999999999999987651      22222246778888876322110                     


Q ss_pred             hHHHHhcCC-ceeEEEEEecCHHHHHHHHHHcCCC
Q 013898          115 RSFAASHGL-AARSIAVEVEDADVAFNTSVAHGAK  148 (434)
Q Consensus       115 ~~~l~~hG~-gv~~Iaf~V~Dvd~a~~ra~~~Ga~  148 (434)
                         ..-.|+ -+..|-+.|+++.+. +.+.++|.+
T Consensus        56 ---r~V~G~KKl~~ivIkv~~~~EI-e~LLar~~~   86 (125)
T PF14506_consen   56 ---RAVEGPKKLNRIVIKVPNPKEI-EALLARGAQ   86 (125)
T ss_dssp             ---B--SSS-SEEEEEEEESSHHHH-HHHHHC-S-
T ss_pred             ---ccccCcceeeEEEEEcCCHHHH-HHHHhcccc
Confidence               011233 567899999998877 556677765

>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function

Probab=94.87  E-value=0.026  Score=56.02  Aligned_cols=107  Identities=22%  Similarity=0.220  Sum_probs=49.8

Q ss_pred             CchHHHHHhhcCCCCceEEEEEe------CCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHh
Q 013898          276 KSQIQTYLEHNEGAGVQHLALVS------EDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEE  349 (434)
Q Consensus       276 ~s~i~~fl~~~~G~GvqHIAf~v------dDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~  349 (434)
                      .|++.-++-. .|..++|++.+|      .||++..+.|+++    |++.-+.  ..       +               
T Consensus       171 eSe~aAWi~~-~G~~~NH~T~~v~~l~~~~dI~~v~~~l~~~----G~~~n~~--g~-------~---------------  221 (302)
T PF07063_consen  171 ESEYAAWIAA-HGYHINHFTPRVNRLKKFLDIDAVNAFLKER----GIPMNDS--GG-------E---------------  221 (302)
T ss_dssp             H-HHHHHHHH-HTCS-SEEEEETTT-TT-S-HHHHHHHHHHT----T--B--T--TS-------S---------------
T ss_pred             HhHHHHhhcc-cccccceeeceeecccccccHHHHHHHHHHc----CCCcccc--CC-------c---------------
Confidence            4566666666 588899999999      9999999999999    9775520  00       0               


Q ss_pred             cCeEEecCCCceEEEEEccccC------C---------CCCeEEEEEEeeccccc-cccCc-ccccCCCCCcCCccHHHH
Q 013898          350 LGVLVDRDDQGTLLQIFTKPVG------D---------RPTIFIEIIQRVGCMLK-DEEGK-TYQKGGCGGFGKGNFSEL  412 (434)
Q Consensus       350 ~~iL~D~d~~g~llqifT~~~~------~---------r~~~FfEiIqR~g~~~~-~~~~~-~~~~~~~~GFG~gN~~aL  412 (434)
                          +-..+++.|.|--|+-.-      +         -|.=|+||+||.--... ...|. ....--+.||=.+|-..+
T Consensus       222 ----Iegsp~~lLrQtS~~A~~~~v~F~d~~g~~~~~~ip~~f~Ef~~R~~~~~~~~~~~~~~~~~~~yegF~~~sA~~I  297 (302)
T PF07063_consen  222 ----IEGSPDGLLRQTSTMADEEEVTFADGDGSLVEGSIPGSFYEFAQRYPLPEGLILPGDEIAEPILYEGFLPGSADGI  297 (302)
T ss_dssp             ----SEECCCCSEEEEEBEEEEEEEEETTETS-ECEEEEEEEEEEEEEE-CTTCCHHHTTSEEEEESB--SSS-------
T ss_pred             ----eEECCCCCEEEEeeccceeEEEEecCCCceeeeEeeeeEEeehhhccCcccccCccccccCCcccCCCChhhhhhh
Confidence                111123444444433211      0         13469999999421110 00011 222234689999999999


Q ss_pred             HHH
Q 013898          413 FKS  415 (434)
Q Consensus       413 f~a  415 (434)
                      |||
T Consensus       298 FeS  300 (302)
T PF07063_consen  298 FES  300 (302)
T ss_dssp             ---
T ss_pred             hcc
Confidence            987

The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.

>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]

Probab=94.71  E-value=0.4  Score=40.51  Aligned_cols=96  Identities=21%  Similarity=0.166  Sum_probs=55.9

Q ss_pred             EEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCChh
Q 013898           33 FHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHA  112 (434)
Q Consensus        33 l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~  112 (434)
                      +=|+.+-|.|++++.+||.++||.+.-....  ++   +..-++  | -+++.--...+++        +++       +
T Consensus         5 ~FHLA~pV~Dl~~tr~FYgevlG~~~GRstd--~w---vdfDfy--G-HQ~v~Hl~~q~~~--------~~~-------g   61 (138)
T COG3565           5 PFHLAIPVNDLDETRRFYGEVLGCKEGRSTD--TW---VDFDFY--G-HQVVAHLTPQPDS--------QGS-------G   61 (138)
T ss_pred             ceEEeeeccccHHHHhhhhhhcccccccccc--eE---EEeeec--c-cEEEEEecCCccc--------ccC-------c
Confidence            4599999999999999999999988543211  11   111121  2 2222211111110        000       0


Q ss_pred             HHhHHHHhcCCce--eEEEEEecCHHHHHHHHHHcCCCCCCCCcc
Q 013898          113 ACRSFAASHGLAA--RSIAVEVEDADVAFNTSVAHGAKPSSPPVI  155 (434)
Q Consensus       113 ~~~~~l~~hG~gv--~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~  155 (434)
                          -++.|+.-+  ..+-|.++|=-+..+|+.++|+....+|..
T Consensus        62 ----~V~~~~v~~pHfGvVl~~edW~alaerlea~gi~~~i~P~v  102 (138)
T COG3565          62 ----KVDGHGVPPPHFGVVLPVEDWFALAERLEAAGIPFHIPPKV  102 (138)
T ss_pred             ----ccCCCCCCCccceEEEEHHHHHHHHHHHHHcCCCcccCceE
Confidence                123454322  345667888888999999999887766643

>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D

Probab=92.08  E-value=1.1  Score=38.14  Aligned_cols=80  Identities=15%  Similarity=0.243  Sum_probs=48.9

Q ss_pred             eeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcCCCC
Q 013898          211 HAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAG  290 (434)
Q Consensus       211 Hv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G~G  290 (434)
                      +=++.|.|.+..++||+++|||+...+-.         ++  .++.+..+.-+|.|-|++.   -++.      .-.|+=
T Consensus         3 ~PvlRVnnR~~ni~FY~~~LGfkll~EEn---------a~--a~lg~~~~~erlvlEESP~---~rtr------~V~G~K   62 (125)
T PF14506_consen    3 IPVLRVNNRDLNIDFYQKTLGFKLLSEEN---------AL--AILGDQQKEERLVLEESPS---MRTR------AVEGPK   62 (125)
T ss_dssp             EEEEEESSHHHHHHHHTTTT--EEEEEET---------TE--EEEE-TT--EEEEEEE--T---TT-B--------SSS-
T ss_pred             CceEEEcCHHHhHHHHHhccCcEEeeccc---------cE--EEecCCCCceEEEEecCCc---cccc------cccCcc
Confidence            34678899999999999999999886532         12  2233445678899988753   1110      001222


Q ss_pred             -ceEEEEEeCCHHHHHHHHHHh
Q 013898          291 -VQHLALVSEDIFRTLREMRKR  311 (434)
Q Consensus       291 -vqHIAf~vdDI~~av~~L~~~  311 (434)
                       +++|-+.|+|- .-++.|.++
T Consensus        63 Kl~~ivIkv~~~-~EIe~LLar   83 (125)
T PF14506_consen   63 KLNRIVIKVPNP-KEIEALLAR   83 (125)
T ss_dssp             SEEEEEEEESSH-HHHHHHHHC
T ss_pred             eeeEEEEEcCCH-HHHHHHHhc
Confidence             99999999986 556777777

>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.45  E-value=3.3  Score=36.35  Aligned_cols=92  Identities=16%  Similarity=0.143  Sum_probs=52.4

Q ss_pred             EecC-CHHHHHHHHHHhhCCeeeeeeecccCc-ccc----cCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcC
Q 013898          214 GNVP-ELAPAVAYVKSFTGFHEFAEFTAEDVG-TSE----SGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNE  287 (434)
Q Consensus       214 i~V~-dl~~~~~fY~~vLGf~~~~~~~~~d~~-~~~----~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~  287 (434)
                      +++. |-+++++||+++||++........+.. ...    ..+...-+.-  +...|.+....+.  ..        ...
T Consensus         6 l~f~gn~~~Al~fY~~vFgae~~~~~~~~d~~~~~~~~~~~~i~HA~l~i--~g~~im~sd~~~~--~~--------~~~   73 (136)
T COG2764           6 LFFNGNAREALAFYKEVFGAEELKRVPFGDMPSSAGEPPGGRIMHAELRI--GGSTIMLSDAFPD--MG--------ATE   73 (136)
T ss_pred             EEECCCHHHHHHHHHHHhCceEEEEEEcCccCccccccccCceEEEEEEE--CCEEEEEecCCCc--cC--------ccc
Confidence            4566 899999999999999977654322210 000    0011111111  2234444433210  00        112


Q ss_pred             CCC-ceEEEEEeCCHHHHHHHHHHhcCCCCceecc
Q 013898          288 GAG-VQHLALVSEDIFRTLREMRKRSGVGGFEFMP  321 (434)
Q Consensus       288 G~G-vqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~  321 (434)
                      +.+ -.=|=+.++|+++..+++.+.    |++++.
T Consensus        74 ~~~~s~~l~~~~~d~da~f~~a~~a----Ga~v~m  104 (136)
T COG2764          74 GGGTSLSLDLYVEDVDAVFERAAAA----GATVVM  104 (136)
T ss_pred             CCCeeEEEEEEehHHHHHHHHHHhc----CCeEEe
Confidence            233 556777888999999999998    977774

>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A

Probab=89.24  E-value=4.6  Score=34.25  Aligned_cols=84  Identities=17%  Similarity=0.157  Sum_probs=48.1

Q ss_pred             EEEEEeCCHHHHHHHHHHhcCCcE-EEEecCCCC---ce-eEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCC
Q 013898           35 HVEFWCTDATNTARRFSWGLGMPI-VAKSDLSTG---NT-VHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTF  109 (434)
Q Consensus        35 HI~~~V~da~~a~~fy~~~lGf~~-v~~~~~~~g---~~-~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~  109 (434)
                      |+.|- .++++|..||.++||-.. ......+..   .. .+....+..++..|+...... .                +
T Consensus         6 yL~F~-g~a~eA~~fY~~vf~~~~i~~~~~~~~~~~~~~~~v~ha~l~i~g~~lm~~D~~~-~----------------~   67 (116)
T PF06983_consen    6 YLWFN-GNAEEALEFYKEVFGGSEIMTFGDYPDDEPEWKDKVMHAELTIGGQKLMASDGGP-D----------------F   67 (116)
T ss_dssp             EEEES-S-HHHHHHHHHHHSTTEEEEEEEE-TTTCTTHTTSEEEEEEEETTEEEEEEEEST-S-----------------
T ss_pred             EEEeC-CCHHHHHHHHHHHcCCCEEEEEeECCCCCCCCCCcEEEEEEEECCeEEEEECCCC-C----------------C
Confidence            34442 799999999999998533 332222111   11 233455677888888765321 0                0


Q ss_pred             ChhHHhHHHHhcCCceeEEEEEecC---HHHHHHHHHHcCC
Q 013898          110 DHAACRSFAASHGLAARSIAVEVED---ADVAFNTSVAHGA  147 (434)
Q Consensus       110 ~~~~~~~~l~~hG~gv~~Iaf~V~D---vd~a~~ra~~~Ga  147 (434)
                                ..+.+ ..+++.++|   ++.++++|.+.|-
T Consensus        68 ----------~~~~~-~sl~i~~~~~ee~~~~f~~Ls~gG~   97 (116)
T PF06983_consen   68 ----------PFGNN-ISLCIECDDEEEIDRIFDKLSEGGQ   97 (116)
T ss_dssp             -------------TT-EEEEEEESSHHHHHHHHHHHHTTTE
T ss_pred             ----------CCCCc-EEEEEEcCCHHHHHHHHHHHHcCCC
Confidence                      12334 377888887   5667777777665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	434
1sqd_A	424	Structural Basis For Inhibitor Selectivity Revealed		0.0
1sp9_A	445	4-hydroxyphenylpyruvate Dioxygenase Length = 445		0.0
1sp8_A	418	4-hydroxyphenylpyruvate Dioxygenase Length = 418		1e-137
3isq_A	393	Crystal Structure Of Human 4-Hydroxyphenylpyruvate		6e-52
1sqi_A	393	Structural Basis For Inhibitor Selectivity Revealed		3e-50
1t47_A	381	Structure Of Fe2-Hppd Bound To Ntbc Length = 381		2e-47
1cjx_A	357	Crystal Structure Of Pseudomonas Fluorescens Hppd L		1e-20
2r5v_A	357	Hydroxymandelate Synthase Crystal Structure Length		3e-19

>pdb|1SQD|A Chain A, Structural Basis For Inhibitor Selectivity Revealed By Crystal Structures Of Plant And Mammalian 4- Hydroxyphenylpyruvate Dioxygenases Length = 424

Iteration: 1
 Score =  655 bits (1689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 308/417 (73%), Positives = 348/417 (83%), Gaps = 1/417 (0%)
Query: 11  KLVGFKNFVRQNPKSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTV 70
           KLVGF  FVR+NPKSD+F+V RFHH+EFWC DATN ARRFSWGLGM   AKSDLSTGN V
Sbjct: 4   KLVGFSKFVRKNPKSDKFKVKRFHHIEFWCGDATNVARRFSWGLGMRFSAKSDLSTGNMV 63
Query: 71  HASYLLRSGDLRFVFTAPYSPXXXXXXXXXXXXXXLPTFDHAACRSFAASHGLAARSIAV 130
           HASYLL SGDLRF+FTAPYSP              +P+FDH +CRSF +SHGL  R++A+
Sbjct: 64  HASYLLTSGDLRFLFTAPYSPSLSAGEIKPTTTASIPSFDHGSCRSFFSSHGLGVRAVAI 123
Query: 131 EVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSYK-DKANHLDFLP 189
           EVEDA+ AF+ SVA+GA PSSPP++L+    IAEV+LYGDVVLRYVSYK +     +FLP
Sbjct: 124 EVEDAESAFSISVANGAIPSSPPIVLNEAVTIAEVKLYGDVVLRYVSYKAEDTEKSEFLP 183
Query: 190 GFEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESG 249
           GFE  ++ SSFPLDYGIRRLDHAVGNVPEL PA+ YV  FTGFH+FAEFTA+DVGT+ESG
Sbjct: 184 GFERVEDASSFPLDYGIRRLDHAVGNVPELGPALTYVAGFTGFHQFAEFTADDVGTAESG 243
Query: 250 LNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMR 309
           LNS VLA+NDEMVLLP+NEPV GTKRKSQIQTYLEHNEGAG+QHLAL+SEDIFRTLREMR
Sbjct: 244 LNSAVLASNDEMVLLPINEPVHGTKRKSQIQTYLEHNEGAGLQHLALMSEDIFRTLREMR 303
Query: 310 KRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFTKP 369
           KRS +GGF+FMPSPPPTYY+NLK R GDVL+D+QIK+CEELG+LVDRDDQGTLLQIFTKP
Sbjct: 304 KRSSIGGFDFMPSPPPTYYQNLKKRVGDVLSDDQIKECEELGILVDRDDQGTLLQIFTKP 363
Query: 370 VGDRPTIFIEIIQRVGCMLKDEEXXXXXXXXXXXXXXXNFSELFKSIEEYEKTLGAK 426
           +GDRPTIFIEIIQRVGCM+KDEE               NFSELFKSIEEYEKTL AK
Sbjct: 364 LGDRPTIFIEIIQRVGCMMKDEEGKAYQSGGCGGFGKGNFSELFKSIEEYEKTLEAK 420

>pdb|1SP9|A Chain A, 4-hydroxyphenylpyruvate Dioxygenase Length = 445

Iteration: 1
 Score =  655 bits (1689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 308/417 (73%), Positives = 348/417 (83%), Gaps = 1/417 (0%)
Query: 11  KLVGFKNFVRQNPKSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTV 70
           KLVGF  FVR+NPKSD+F+V RFHH+EFWC DATN ARRFSWGLGM   AKSDLSTGN V
Sbjct: 25  KLVGFSKFVRKNPKSDKFKVKRFHHIEFWCGDATNVARRFSWGLGMRFSAKSDLSTGNMV 84
Query: 71  HASYLLRSGDLRFVFTAPYSPXXXXXXXXXXXXXXLPTFDHAACRSFAASHGLAARSIAV 130
           HASYLL SGDLRF+FTAPYSP              +P+FDH +CRSF +SHGL  R++A+
Sbjct: 85  HASYLLTSGDLRFLFTAPYSPSLSAGEIKPTTTASIPSFDHGSCRSFFSSHGLGVRAVAI 144
Query: 131 EVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSYK-DKANHLDFLP 189
           EVEDA+ AF+ SVA+GA PSSPP++L+    IAEV+LYGDVVLRYVSYK +     +FLP
Sbjct: 145 EVEDAESAFSISVANGAIPSSPPIVLNEAVTIAEVKLYGDVVLRYVSYKAEDTEKSEFLP 204
Query: 190 GFEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESG 249
           GFE  ++ SSFPLDYGIRRLDHAVGNVPEL PA+ YV  FTGFH+FAEFTA+DVGT+ESG
Sbjct: 205 GFERVEDASSFPLDYGIRRLDHAVGNVPELGPALTYVAGFTGFHQFAEFTADDVGTAESG 264
Query: 250 LNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMR 309
           LNS VLA+NDEMVLLP+NEPV GTKRKSQIQTYLEHNEGAG+QHLAL+SEDIFRTLREMR
Sbjct: 265 LNSAVLASNDEMVLLPINEPVHGTKRKSQIQTYLEHNEGAGLQHLALMSEDIFRTLREMR 324
Query: 310 KRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFTKP 369
           KRS +GGF+FMPSPPPTYY+NLK R GDVL+D+QIK+CEELG+LVDRDDQGTLLQIFTKP
Sbjct: 325 KRSSIGGFDFMPSPPPTYYQNLKKRVGDVLSDDQIKECEELGILVDRDDQGTLLQIFTKP 384
Query: 370 VGDRPTIFIEIIQRVGCMLKDEEXXXXXXXXXXXXXXXNFSELFKSIEEYEKTLGAK 426
           +GDRPTIFIEIIQRVGCM+KDEE               NFSELFKSIEEYEKTL AK
Sbjct: 385 LGDRPTIFIEIIQRVGCMMKDEEGKAYQSGGCGGFGKGNFSELFKSIEEYEKTLEAK 441

>pdb|1SP8|A Chain A, 4-hydroxyphenylpyruvate Dioxygenase Length = 418

Iteration: 1
 Score =  486 bits (1250), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 261/416 (62%), Positives = 305/416 (73%), Gaps = 8/416 (1%)
Query: 11  KLVGFKNFVRQNPKSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTV 70
           +LVG +NFVR NP+SDRF    FHHVE WC DA + A RFS+GLG P+ A+SDLSTGN+ 
Sbjct: 10  RLVGHRNFVRFNPRSDRFHTLAFHHVELWCADAASAAGRFSFGLGAPLAARSDLSTGNSA 69
Query: 71  HASYLLRSGDLRFVFTAPYSPXXXXXXXXXXXXXXLPTFDHAACRSFAASHGLAARSIAV 130
           HAS LLRSG L F+FTAPY+               LP+F  AA R FAA HGLA R++A+
Sbjct: 70  HASLLLRSGSLSFLFTAPYA------HGADAATAALPSFSAAAARRFAADHGLAVRAVAL 123
Query: 131 EVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSYKDKANHLDFLPG 190
            V DA+ AF  SVA GA+P+  PV L     +AEV+LYGDVVLRYVSY D A    FLPG
Sbjct: 124 RVADAEDAFRASVAAGARPAFGPVDLGRGFRLAEVELYGDVVLRYVSYPDGAAGEPFLPG 183
Query: 191 FEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGL 250
           FE     S    DYG+ R DH VGNVPELAPA AY   FTGFHEFAEFT EDVGT+ESGL
Sbjct: 184 FEGV--ASPGAADYGLSRFDHIVGNVPELAPAAAYFAGFTGFHEFAEFTTEDVGTAESGL 241
Query: 251 NSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRK 310
           NS+VLANN E VLLP+NEPV GTKR+SQIQT+L+H+ G GVQH+AL S+D+ RTLREM+ 
Sbjct: 242 NSMVLANNSENVLLPLNEPVHGTKRRSQIQTFLDHHGGPGVQHMALASDDVLRTLREMQA 301
Query: 311 RSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFTKPV 370
           RS +GGFEFM  P   YY  ++ RAGDVLT+ QIK+C+ELGVLVDRDDQG LLQIFTKPV
Sbjct: 302 RSAMGGFEFMAPPTSDYYDGVRRRAGDVLTEAQIKECQELGVLVDRDDQGVLLQIFTKPV 361
Query: 371 GDRPTIFIEIIQRVGCMLKDEEXXXXXXXXXXXXXXXNFSELFKSIEEYEKTLGAK 426
           GDRPT+F+EIIQR+GCM KDE+               NFS+LFKSIE+YEK+L AK
Sbjct: 362 GDRPTLFLEIIQRIGCMEKDEKGQEYQKGGCGGFGKGNFSQLFKSIEDYEKSLEAK 417

>pdb|3ISQ|A Chain A, Crystal Structure Of Human 4-Hydroxyphenylpyruvate Dioxygenase Length = 393

Iteration: 1
 Score =  201 bits (511), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 145/419 (34%), Positives = 201/419 (47%), Gaps = 53/419 (12%)
Query: 24  KSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRF 83
           K +R R   FH V FW  +A   A  +   +G   +A   L TG+    S++++ G + F
Sbjct: 3   KPERGRFLHFHSVTFWVGNAKQAASFYCSKMGFEPLAYRGLETGSREVVSHVIKQGKIVF 62
Query: 84  VFTAPYSPXXXXXXXXXXXXXXLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSV 143
           V ++  +P                  DH         HG   + IA EVED D     + 
Sbjct: 63  VLSSALNPWNKEMG------------DHLV------KHGDGVKDIAFEVEDCDYIVQKAR 104
Query: 144 AHGAKPSSPPVI-LDNLAVI--AEVQLYGDVVLRYVSYKDKANHL-DFLPGFEP---TDE 196
             GAK    P +  D    +  A +Q YGD     V   +K N++  FLPG+E     D 
Sbjct: 105 ERGAKIMREPWVEQDKFGKVKFAVLQTYGDTTHTLV---EKMNYIGQFLPGYEAPAFMDP 161
Query: 197 ISSFPLDYGIRRLDHAVGNVP--ELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVV 254
           +        +  +DH VGN P  E+  A  +      FH F       V T  S L S+V
Sbjct: 162 LLPKLPKCSLEMIDHIVGNQPDQEMVSASEWYLKNLQFHRFWSVDDTQVHTEYSSLRSIV 221
Query: 255 LANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGV 314
           +AN +E + +P+NEP  G K+KSQIQ Y+++N GAGVQH+AL +EDI   +R +R+R   
Sbjct: 222 VANYEESIKMPINEPAPG-KKKSQIQEYVDYNGGAGVQHIALKTEDIITAIRHLRER--- 277
Query: 315 GGFEFMPSPPPTYYKNLKNR--AGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFTKPVGD 372
            G EF+ S P TYYK L+ +     +   E I   EEL +LVD D++G LLQIFTKPV D
Sbjct: 278 -GLEFL-SVPSTYYKQLREKLKTAKIKVKENIDALEELKILVDYDEKGYLLQIFTKPVQD 335
Query: 373 RPTIFIEIIQRVGCMLKDEEXXXXXXXXXXXXXXXNFSELFKSIEEYEKTLGAKPVAET 431
           RPT+F+E+IQR                        NF+ LFK+ EE +   G     ET
Sbjct: 336 RPTLFLEVIQR---------------HNHQGFGAGNFNSLFKAFEEEQNLRGNLTNMET 379

>pdb|1SQI|A Chain A, Structural Basis For Inhibitor Selectivity Revealed By Crystal Structures Of Plant And Mammalian 4- Hydroxyphenylpyruvate Dioxygenases Length = 393

Iteration: 1
 Score =  196 bits (497), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 140/418 (33%), Positives = 204/418 (48%), Gaps = 53/418 (12%)
Query: 18  FVRQNPKSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLR 77
           +  + PK +R R   FH V FW  +A   A  +   +G   +A   L TG+    S++++
Sbjct: 4   YSNKGPKPERGRFLHFHSVTFWVGNAKQAASFYCNKMGFEPLAYKGLETGSREVVSHVIK 63
Query: 78  SGDLRFVFTAPYSPXXXXXXXXXXXXXXLPTFDHAACRSFAASHGLAARSIAVEVEDADV 137
            G + FV  +  +P                  DH         HG   + IA EVED + 
Sbjct: 64  QGKIVFVLCSALNPWNKEMG------------DHLV------KHGDGVKDIAFEVEDCEH 105
Query: 138 AFNTSVAHGAKPSSPPVILDNL---AVIAEVQLYGDVVLRYVSYKDKANHLD-FLPGFE- 192
               +   GAK    P + ++       A +Q YGD     V   +K N+   FLPGFE 
Sbjct: 106 IVQKARERGAKIVREPWVEEDKFGKVKFAVLQTYGDTTHTLV---EKINYTGRFLPGFEA 162
Query: 193 PTDEISSFPL--DYGIRRLDHAVGNVP--ELAPAVAYVKSFTGFHEFAEFTAEDVGTSES 248
           PT + +  P      +  +DH VGN P  E+  A  +      FH F       V T  S
Sbjct: 163 PTYKDTLLPKLPSCNLEIIDHIVGNQPDQEMESASEWYLKNLQFHRFWSVDDTQVHTEYS 222
Query: 249 GLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREM 308
            L S+V+AN +E + +P+NEP  G ++KSQIQ Y+++N GAGVQH+AL +EDI  T+R +
Sbjct: 223 SLRSIVVANYEESIKMPINEPAPG-RKKSQIQEYVDYNGGAGVQHIALRTEDIITTIRHL 281
Query: 309 RKRSGVGGFEFMPSPPPTYYKNLKN--RAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIF 366
           R+R    G EF+ + P +YY+ L+   +   +   E +   EEL +LVD D++G LLQIF
Sbjct: 282 RER----GMEFL-AVPSSYYRLLRENLKTSKIQVKENMDVLEELKILVDYDEKGYLLQIF 336
Query: 367 TKPVGDRPTIFIEIIQRVGCMLKDEEXXXXXXXXXXXXXXXNFSELFKSIEEYEKTLG 424
           TKP+ DRPT+F+E+IQR                        NF+ LFK+ EE +   G
Sbjct: 337 TKPMQDRPTLFLEVIQR---------------HNHQGFGAGNFNSLFKAFEEEQALRG 379

>pdb|1T47|A Chain A, Structure Of Fe2-Hppd Bound To Ntbc Length = 381

Iteration: 1
 Score =  186 bits (472), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 138/406 (33%), Positives = 185/406 (45%), Gaps = 45/406 (11%)
Query: 24  KSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRF 83
           ++D F V     V F   +A   A  +S   GM +VA S    G+   ASY+L +G  RF
Sbjct: 14  QADPFPVKGMDAVVFAVGNAKQAAHYYSTAFGMQLVAYSGPENGSRETASYVLTNGSARF 73
Query: 84  VFTAPYSPXXXXXXXXXXXXXXLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSV 143
           V T+   P                  DH A       HG     +A+EV DA  A   ++
Sbjct: 74  VLTSVIKPATPWGHFLA---------DHVA------EHGDGVVDLAIEVPDARAAHAYAI 118
Query: 144 AHGAKPSSPPVILDN---LAVIAEVQLYGDVVLRYVSYKDKANHLDFLPGFEPTDEISSF 200
            HGA+  + P  L +     V+A +  YG    R+           +LPG+     I   
Sbjct: 119 EHGARSVAEPYELKDEHGTVVLAAIATYGKT--RHTLVDRTGYDGPYLPGYVAAAPIVEP 176
Query: 201 PLDYGIRRLDHAVGNVP--ELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANN 258
           P     + +DH VGNV    +   V +     GF    EF  +D+ T  S L S V+A+ 
Sbjct: 177 PAHRTFQAIDHCVGNVELGRMNEWVGFYNKVMGFTNMKEFVGDDIATEYSALMSKVVADG 236
Query: 259 DEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFE 318
              V  P+NEP    K+KSQI  YLE   GAGVQH+AL + DI  T+R MR      G +
Sbjct: 237 TLKVKFPINEPAL-AKKKSQIDEYLEFYGGAGVQHIALNTGDIVETVRTMR----AAGVQ 291
Query: 319 FMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFTKPVGDRPTIFI 378
           F+ +P  +YY  L    GD  T   +    EL +L DRD+ G LLQIFTKPV DRPT+F 
Sbjct: 292 FLDTPD-SYYDTLGEWVGD--TRVPVDTLRELKILADRDEDGYLLQIFTKPVQDRPTVFF 348
Query: 379 EIIQRVGCMLKDEEXXXXXXXXXXXXXXXNFSELFKSIEEYEKTLG 424
           EII+R G M                    NF  LF++IE  ++  G
Sbjct: 349 EIIERHGSM---------------GFGKGNFKALFEAIEREQEKRG 379

>pdb|1CJX|A Chain A, Crystal Structure Of Pseudomonas Fluorescens Hppd Length = 357

Iteration: 1
 Score = 97.8 bits (242), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 89/312 (28%), Positives = 142/312 (45%), Gaps = 46/312 (14%)
Query: 117 FAASHGLAARSIAVEVEDADVAFNTSVAHGAKP---SSPPVILDNLAV--IAEVQLYGDV 171
           FAA HG +   +A  V+D+  A+N ++  GA+P    + P+ L+  A+  I    LY   
Sbjct: 69  FAAEHGPSVCGMAFRVKDSQKAYNRALELGAQPIHIDTGPMELNLPAIKGIGGAPLY--- 125
Query: 172 VLRYVSYKDKANHLDF--LPGFEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSF 229
           ++           +DF  L G E        P+  G++ +DH   NV      V +   +
Sbjct: 126 LIDRFGEGSSIYDIDFVYLEGVERN------PVGAGLKVIDHLTHNVYR-GRMVYWANFY 178
Query: 230 TGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGA 289
                F E    D+    +GL S  ++  D M+ +P+NE    +K   QI+ +L    G 
Sbjct: 179 EKLFNFREARYFDIKGEYTGLTSKAMSAPDGMIRIPLNEE--SSKGAGQIEEFLMQFNGE 236
Query: 290 GVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEE 349
           G+QH+A +++D+ +T   ++K     G  FM +PP TYY+ L+ R  D    E + Q + 
Sbjct: 237 GIQHVAFLTDDLVKTWDALKKI----GMRFMTAPPDTYYEMLEGRLPD--HGEPVDQLQA 290
Query: 350 LGVLVD----RDDQGTLLQIFTKPVGDRPTIFIEIIQRVGCMLKDEEXXXXXXXXXXXXX 405
            G+L+D      D+  LLQIF++ +     +F E IQR G                    
Sbjct: 291 RGILLDGSSVEGDKRLLLQIFSETL--MGPVFFEFIQRKG---------------DDGFG 333
Query: 406 XXNFSELFKSIE 417
             NF  LF+SIE
Sbjct: 334 EGNFKALFESIE 345

>pdb|2R5V|A Chain A, Hydroxymandelate Synthase Crystal Structure Length = 357

Iteration: 1
 Score = 93.2 bits (230), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 90/320 (28%), Positives = 132/320 (41%), Gaps = 36/320 (11%)
Query: 71  HASYLLRSGDLRFVFTAPYSPXXXXXXXXXXXXXXLPTFDHAACRSFAASHGLAARSIAV 130
           H S  LR G +  V T P S                   D     ++  +HG     IA+
Sbjct: 40  HRSIALRQGQVTLVLTEPTS-------------------DRHPAAAYLQTHGDGVADIAM 80
Query: 131 EVEDADVAFNTSVAHGAKPSSPPVILDNLAVI-AEVQLYGDVVLRYVSYKDKANHLDFLP 189
              D   A+  +V  GA+    P      AV  A +  +GDVV   +     +  L   P
Sbjct: 81  ATSDVAAAYEAAVRAGAEAVRAPGQHSEAAVTTATIGGFGDVVHTLIQRDGTSAELP--P 138
Query: 190 GFEPTDEISSFPL-DYGIRRLDH--AVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTS 246
           GF  + ++++    D  +  +DH     N  +L P V Y +   GF +  +   E +   
Sbjct: 139 GFTGSMDVTNHGKGDVDLLGIDHFAICLNAGDLGPTVEYYERALGFRQIFD---EHIVVG 195
Query: 247 ESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLR 306
              +NS V+ +    V L + EP        QI  +L+ ++GAGVQH+A  S D  R ++
Sbjct: 196 AQAMNSTVVQSASGAVTLTLIEPDRNAD-PGQIDEFLKDHQGAGVQHIAFNSNDAVRAVK 254
Query: 307 EMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIF 366
            + +R    G EF+ +P   YY  L  R    L    +       VL D D  G L QIF
Sbjct: 255 ALSER----GVEFLKTPGA-YYDLLGERI--TLQTHSLDDLRATNVLADEDHGGQLFQIF 307
Query: 367 TKPVGDRPTIFIEIIQRVGC 386
           T     R TIF E+I+R G 
Sbjct: 308 TASTHPRHTIFFEVIERQGA 327

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	434
1sqd_A	424	4-hydroxyphenylpyruvate dioxygenase; oxidoreductas	1e-139
1sp8_A	418	4-hydroxyphenylpyruvate dioxygenase; oxidoreductas	1e-138
1t47_A	381	4-hydroxyphenylpyruvate dioxygenase; triketone inh	1e-100
3isq_A	393	4-hydroxyphenylpyruvate dioxygenase; tyrosine meta	9e-96
2r5v_A	357	PCZA361.1; dioxygenase, non-heme iron, vancomycin,	1e-89
1cjx_A	357	4-hydroxyphenylpyruvate dioxygenase; oxidoreductas	2e-81
3gm5_A	159	Lactoylglutathione lyase and related lyases; sheet	2e-04
1jc4_A	148	Methylmalonyl-COA epimerase; vicinal oxygen chelat	6e-04

>1sqd_A 4-hydroxyphenylpyruvate dioxygenase; oxidoreductase; 1.80A {Arabidopsis thaliana} SCOP: d.32.1.3 d.32.1.3 PDB: 1tfz_A* 1tg5_A* 1sp9_A Length = 424

 Score =  403 bits (1037), Expect = e-139
 Identities = 325/417 (77%), Positives = 368/417 (88%), Gaps = 1/417 (0%)

Query: 11  KLVGFKNFVRQNPKSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTV 70
           KLVGF  FVR+NPKSD+F+V RFHH+EFWC DATN ARRFSWGLGM   AKSDLSTGN V
Sbjct: 4   KLVGFSKFVRKNPKSDKFKVKRFHHIEFWCGDATNVARRFSWGLGMRFSAKSDLSTGNMV 63

Query: 71  HASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHAACRSFAASHGLAARSIAV 130
           HASYLL SGDLRF+FTAPYSPS+S       ++AS+P+FDH +CRSF +SHGL  R++A+
Sbjct: 64  HASYLLTSGDLRFLFTAPYSPSLSAGEIKPTTTASIPSFDHGSCRSFFSSHGLGVRAVAI 123

Query: 131 EVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSYKDKAN-HLDFLP 189
           EVEDA+ AF+ SVA+GA PSSPP++L+    IAEV+LYGDVVLRYVSYK +     +FLP
Sbjct: 124 EVEDAESAFSISVANGAIPSSPPIVLNEAVTIAEVKLYGDVVLRYVSYKAEDTEKSEFLP 183

Query: 190 GFEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESG 249
           GFE  ++ SSFPLDYGIRRLDHAVGNVPEL PA+ YV  FTGFH+FAEFTA+DVGT+ESG
Sbjct: 184 GFERVEDASSFPLDYGIRRLDHAVGNVPELGPALTYVAGFTGFHQFAEFTADDVGTAESG 243

Query: 250 LNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMR 309
           LNS VLA+NDEMVLLP+NEPV GTKRKSQIQTYLEHNEGAG+QHLAL+SEDIFRTLREMR
Sbjct: 244 LNSAVLASNDEMVLLPINEPVHGTKRKSQIQTYLEHNEGAGLQHLALMSEDIFRTLREMR 303

Query: 310 KRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFTKP 369
           KRS +GGF+FMPSPPPTYY+NLK R GDVL+D+QIK+CEELG+LVDRDDQGTLLQIFTKP
Sbjct: 304 KRSSIGGFDFMPSPPPTYYQNLKKRVGDVLSDDQIKECEELGILVDRDDQGTLLQIFTKP 363

Query: 370 VGDRPTIFIEIIQRVGCMLKDEEGKTYQKGGCGGFGKGNFSELFKSIEEYEKTLGAK 426
           +GDRPTIFIEIIQRVGCM+KDEEGK YQ GGCGGFGKGNFSELFKSIEEYEKTL AK
Sbjct: 364 LGDRPTIFIEIIQRVGCMMKDEEGKAYQSGGCGGFGKGNFSELFKSIEEYEKTLEAK 420

>1sp8_A 4-hydroxyphenylpyruvate dioxygenase; oxidoreductase; 2.00A {Zea mays} SCOP: d.32.1.3 d.32.1.3 Length = 418

 Score =  400 bits (1028), Expect = e-138
 Identities = 276/422 (65%), Positives = 325/422 (77%), Gaps = 8/422 (1%)

Query: 5   TAELLVKLVGFKNFVRQNPKSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDL 64
             +   +LVG +NFVR NP+SDRF    FHHVE WC DA + A RFS+GLG P+ A+SDL
Sbjct: 4   AEQAAFRLVGHRNFVRFNPRSDRFHTLAFHHVELWCADAASAAGRFSFGLGAPLAARSDL 63

Query: 65  STGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHAACRSFAASHGLA 124
           STGN+ HAS LLRSG L F+FTAPY+        A  ++A+LP+F  AA R FAA HGLA
Sbjct: 64  STGNSAHASLLLRSGSLSFLFTAPYAH------GADAATAALPSFSAAAARRFAADHGLA 117

Query: 125 ARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSYKDKANH 184
            R++A+ V DA+ AF  SVA GA+P+  PV L     +AEV+LYGDVVLRYVSY D A  
Sbjct: 118 VRAVALRVADAEDAFRASVAAGARPAFGPVDLGRGFRLAEVELYGDVVLRYVSYPDGAAG 177

Query: 185 LDFLPGFEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVG 244
             FLPGFE     S    DYG+ R DH VGNVPELAPA AY   FTGFHEFAEFT EDVG
Sbjct: 178 EPFLPGFEGVA--SPGAADYGLSRFDHIVGNVPELAPAAAYFAGFTGFHEFAEFTTEDVG 235

Query: 245 TSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRT 304
           T+ESGLNS+VLANN E VLLP+NEPV GTKR+SQIQT+L+H+ G GVQH+AL S+D+ RT
Sbjct: 236 TAESGLNSMVLANNSENVLLPLNEPVHGTKRRSQIQTFLDHHGGPGVQHMALASDDVLRT 295

Query: 305 LREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQ 364
           LREM+ RS +GGFEFM  P   YY  ++ RAGDVLT+ QIK+C+ELGVLVDRDDQG LLQ
Sbjct: 296 LREMQARSAMGGFEFMAPPTSDYYDGVRRRAGDVLTEAQIKECQELGVLVDRDDQGVLLQ 355

Query: 365 IFTKPVGDRPTIFIEIIQRVGCMLKDEEGKTYQKGGCGGFGKGNFSELFKSIEEYEKTLG 424
           IFTKPVGDRPT+F+EIIQR+GCM KDE+G+ YQKGGCGGFGKGNFS+LFKSIE+YEK+L 
Sbjct: 356 IFTKPVGDRPTLFLEIIQRIGCMEKDEKGQEYQKGGCGGFGKGNFSQLFKSIEDYEKSLE 415

Query: 425 AK 426
           AK
Sbjct: 416 AK 417

>1t47_A 4-hydroxyphenylpyruvate dioxygenase; triketone inhibitor, iron, oxidoreductase; HET: NTD; 2.50A {Streptomyces avermitilis} SCOP: d.32.1.3 d.32.1.3 Length = 381

 Score =  303 bits (777), Expect = e-100
 Identities = 140/411 (34%), Positives = 185/411 (45%), Gaps = 45/411 (10%)

Query: 20  RQNPKSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSG 79
               ++D F V     V F   +A   A  +S   GM +VA S    G+   ASY+L +G
Sbjct: 10  DTARQADPFPVKGMDAVVFAVGNAKQAAHYYSTAFGMQLVAYSGPENGSRETASYVLTNG 69

Query: 80  DLRFVFTAPYSPSISDAADAGNSSASLPTFDHAACRSFAASHGLAARSIAVEVEDADVAF 139
             RFV T+   P+                          A HG     +A+EV DA  A 
Sbjct: 70  SARFVLTSVIKPATPWGHFLA---------------DHVAEHGDGVVDLAIEVPDARAAH 114

Query: 140 NTSVAHGAKPSSPPVIL---DNLAVIAEVQLYGDVVLRYVSYKDKANHLDFLPGFEPTDE 196
             ++ HGA+  + P  L       V+A +  YG      V          +LPG+     
Sbjct: 115 AYAIEHGARSVAEPYELKDEHGTVVLAAIATYGKTRHTLVDRTGYDG--PYLPGYVAAAP 172

Query: 197 ISSFPLDYGIRRLDHAVGNVP--ELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVV 254
           I   P     + +DH VGNV    +   V +     GF    EF  +D+ T  S L S V
Sbjct: 173 IVEPPAHRTFQAIDHCVGNVELGRMNEWVGFYNKVMGFTNMKEFVGDDIATEYSALMSKV 232

Query: 255 LANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGV 314
           +A+    V  P+NEP    K+KSQI  YLE   GAGVQH+AL + DI  T+R MR     
Sbjct: 233 VADGTLKVKFPINEPALA-KKKSQIDEYLEFYGGAGVQHIALNTGDIVETVRTMRAA--- 288

Query: 315 GGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFTKPVGDRP 374
            G +F+   P +YY  L    G   T   +    EL +L DRD+ G LLQIFTKPV DRP
Sbjct: 289 -GVQFLD-TPDSYYDTLGEWVG--DTRVPVDTLRELKILADRDEDGYLLQIFTKPVQDRP 344

Query: 375 TIFIEIIQRVGCMLKDEEGKTYQKGGCGGFGKGNFSELFKSIEEYEKTLGA 425
           T+F EII+R G M               GFGKGNF  LF++IE  ++  G 
Sbjct: 345 TVFFEIIERHGSM---------------GFGKGNFKALFEAIEREQEKRGN 380

>3isq_A 4-hydroxyphenylpyruvate dioxygenase; tyrosine metabolism, DIS mutation, iron, mental retardation, metal-binding, oxidored phenylalanine catabolism; 1.75A {Homo sapiens} PDB: 1sqi_A* Length = 393

 Score =  292 bits (747), Expect = 9e-96
 Identities = 143/422 (33%), Positives = 197/422 (46%), Gaps = 51/422 (12%)

Query: 23  PKSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLR 82
            K +R R   FH V FW  +A   A  +   +G   +A   L TG+    S++++ G + 
Sbjct: 2   AKPERGRFLHFHSVTFWVGNAKQAASFYCSKMGFEPLAYRGLETGSREVVSHVIKQGKIV 61

Query: 83  FVFTAPYSPSISDAADAGNSSASLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTS 142
           FV ++  +P   +  D                      HG   + IA EVED D     +
Sbjct: 62  FVLSSALNPWNKEMGD------------------HLVKHGDGVKDIAFEVEDCDYIVQKA 103

Query: 143 VAHGAKPSSPPVILDNLA---VIAEVQLYGDVVLRYVSYKDKANHLDFLPGF---EPTDE 196
              GAK    P +  +       A +Q YGD     V          FLPG+      D 
Sbjct: 104 RERGAKIMREPWVEQDKFGKVKFAVLQTYGDTTHTLVE--KMNYIGQFLPGYEAPAFMDP 161

Query: 197 ISSFPLDYGIRRLDHAVGNVP--ELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVV 254
           +        +  +DH VGN P  E+  A  +      FH F       V T  S L S+V
Sbjct: 162 LLPKLPKCSLEMIDHIVGNQPDQEMVSASEWYLKNLQFHRFWSVDDTQVHTEYSSLRSIV 221

Query: 255 LANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGV 314
           +AN +E + +P+NEP  G K+KSQIQ Y+++N GAGVQH+AL +EDI   +R +R+R   
Sbjct: 222 VANYEESIKMPINEPAPG-KKKSQIQEYVDYNGGAGVQHIALKTEDIITAIRHLRER--- 277

Query: 315 GGFEFMPSPPPTYYKNLKNRAG--DVLTDEQIKQCEELGVLVDRDDQGTLLQIFTKPVGD 372
            G EF+   P TYYK L+ +     +   E I   EEL +LVD D++G LLQIFTKPV D
Sbjct: 278 -GLEFLS-VPSTYYKQLREKLKTAKIKVKENIDALEELKILVDYDEKGYLLQIFTKPVQD 335

Query: 373 RPTIFIEIIQRVGCMLKDEEGKTYQKGGCGGFGKGNFSELFKSIEEYEKTLGAKPVAETA 432
           RPT+F+E+IQR                   GFG GNF+ LFK+ EE +   G     ET 
Sbjct: 336 RPTLFLEVIQRHNHQ---------------GFGAGNFNSLFKAFEEEQNLRGNLTNMETN 380

Query: 433 AA 434
             
Sbjct: 381 GV 382

>2r5v_A PCZA361.1; dioxygenase, non-heme iron, vancomycin, oxidoreductase; HET: HHH; 2.30A {Amycolatopsis orientalis} Length = 357

 Score =  275 bits (703), Expect = 1e-89
 Identities = 95/390 (24%), Positives = 145/390 (37%), Gaps = 55/390 (14%)

Query: 33  FHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPS 92
             +VE +  +    A  +       +       + +  H S  LR G +  V T P S  
Sbjct: 6   IDYVEMYVENLEVAAFSWVDKYAFAVAGT----SRSADHRSIALRQGQVTLVLTEPTSD- 60

Query: 93  ISDAADAGNSSASLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSP 152
                                  ++  +HG     IA+   D   A+  +V  GA+    
Sbjct: 61  ------------------RHPAAAYLQTHGDGVADIAMATSDVAAAYEAAVRAGAEAVRA 102

Query: 153 PVILDNLAV-IAEVQLYGDVVLRYVSYKDKANHLDFLPGFEP-TDEISSFPLDYGIRRLD 210
           P      AV  A +  +GDVV   +     +   +  PGF    D  +    D  +  +D
Sbjct: 103 PGQHSEAAVTTATIGGFGDVVHTLIQRDGTSA--ELPPGFTGSMDVTNHGKGDVDLLGID 160

Query: 211 HAVGNVP--ELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNE 268
           H    +   +L P V Y +   GF +  +     +      +NS V+ +    V L + E
Sbjct: 161 HFAICLNAGDLGPTVEYYERALGFRQIFDE---HIVVGAQAMNSTVVQSASGAVTLTLIE 217

Query: 269 PVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYY 328
           P        QI  +L+ ++GAGVQH+A  S D  R ++ + +R    G EF+   P  YY
Sbjct: 218 PDRN-ADPGQIDEFLKDHQGAGVQHIAFNSNDAVRAVKALSER----GVEFLK-TPGAYY 271

Query: 329 KNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFTKPVGDRPTIFIEIIQRVGCML 388
             L  R    L    +       VL D D  G L QIFT     R TIF E+I+R G   
Sbjct: 272 DLLGERIT--LQTHSLDDLRATNVLADEDHGGQLFQIFTASTHPRHTIFFEVIERQGAG- 328

Query: 389 KDEEGKTYQKGGCGGFGKGNFSELFKSIEE 418
                          FG  N   L++++E 
Sbjct: 329 --------------TFGSSNIKALYEAVEL 344

>1cjx_A 4-hydroxyphenylpyruvate dioxygenase; oxidoreductase, iron; 2.40A {Pseudomonas fluorescens} SCOP: d.32.1.3 d.32.1.3 Length = 357

 Score =  254 bits (649), Expect = 2e-81
 Identities = 99/410 (24%), Positives = 168/410 (40%), Gaps = 68/410 (16%)

Query: 21  QNPKSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGD 80
           +NP      +  F  +EF           F   +G   VA       +     +L R G+
Sbjct: 5   ENP----MGLMGFEFIEFASPTPGTLEPIFEI-MGFTKVAT------HRSKNVHLYRQGE 53

Query: 81  LRFVFTAPYSPSISDAADAGNSSASLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFN 140
           +  +     +   S                      FAA HG +   +A  V+D+  A+N
Sbjct: 54  INLILNNEPNSIASY---------------------FAAEHGPSVCGMAFRVKDSQKAYN 92

Query: 141 TSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSYKDKANHLDFLPGFEPTDEISSF 200
            ++  GA+P            +  ++  G   L  +    + + + +   F   + +   
Sbjct: 93  RALELGAQPIHIDT-GPMELNLPAIKGIGGAPLYLIDRFGEGSSI-YDIDFVYLEGVERN 150

Query: 201 PLDYGIRRLDHAVGNVP--ELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANN 258
           P+  G++ +DH   NV    +     + +    F E   F   D+    +GL S  ++  
Sbjct: 151 PVGAGLKVIDHLTHNVYRGRMVYWANFYEKLFNFREARYF---DIKGEYTGLTSKAMSAP 207

Query: 259 DEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFE 318
           D M+ +P+NE    +K   QI+ +L    G G+QH+A +++D+ +T   ++K     G  
Sbjct: 208 DGMIRIPLNEE--SSKGAGQIEEFLMQFNGEGIQHVAFLTDDLVKTWDALKKI----GMR 261

Query: 319 FMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRD----DQGTLLQIFTKPVGDRP 374
           FM +PP TYY+ L+ R  D    E + Q +  G+L+D      D+  LLQIF++ +    
Sbjct: 262 FMTAPPDTYYEMLEGRLPDH--GEPVDQLQARGILLDGSSVEGDKRLLLQIFSETLMG-- 317

Query: 375 TIFIEIIQRVGCMLKDEEGKTYQKGGCGGFGKGNFSELFKSIEEYEKTLG 424
            +F E IQR G                 GFG+GNF  LF+SIE  +   G
Sbjct: 318 PVFFEFIQRKGDD---------------GFGEGNFKALFESIERDQVRRG 352

>3gm5_A Lactoylglutathione lyase and related lyases; sheet-helix-sheet-sheet-sheet motif, isomerase; HET: CIT; 2.00A {Thermoanaerobacter tengcongensis} Length = 159

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 22/131 (16%), Positives = 49/131 (37%), Gaps = 23/131 (17%)

Query: 205 GIRRLDHAVG-NVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVL-------- 255
            +R     +G  V ++  ++     F G  +   F  +D   + +  N            
Sbjct: 16  DMRNTVQ-IGIVVRDIEESLQNYAEFFGVEKPQWFWTDDYSKAHTKFNGRPTKARAKLAF 74

Query: 256 --ANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSG 313
                 ++ L+  +E        S  + +L+ N G G+ H+A V +D+ R + E+ ++  
Sbjct: 75  FELGPLQLELIEPDEN------PSTWREFLDKN-GEGIHHIAFVVKDMDRKVEELYRK-- 125

Query: 314 VGGFEFMPSPP 324
             G + +    
Sbjct: 126 --GMKVIQKGD 134

>1jc4_A Methylmalonyl-COA epimerase; vicinal oxygen chelate superfamily, isomerase; 2.00A {Propionibacterium freudenreichiisubsp} SCOP: d.32.1.4 PDB: 1jc5_A Length = 148

 Score = 39.3 bits (91), Expect = 6e-04
 Identities = 26/120 (21%), Positives = 46/120 (38%), Gaps = 9/120 (7%)

Query: 206 IRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLP 265
              +DH     P+   A  Y +   G+HE       + G  E  + +      + M  + 
Sbjct: 7   FICIDHVAYACPDADEASKYYQETFGWHELHREENPEQGVVEI-MMAPAAKLTEHMTQVQ 65

Query: 266 MNEPVFGTKRKSQIQTYLE-HNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPP 324
           +  P      +S +  +L  HN  AG+ H+A   +DI      +R+R    G + +   P
Sbjct: 66  VMAP---LNDESTVAKWLAKHNGRAGLHHMAWRVDDIDAVSATLRER----GVQLLYDEP 118

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	434
1sqd_A	424	4-hydroxyphenylpyruvate dioxygenase; oxidoreductas	100.0
1sp8_A	418	4-hydroxyphenylpyruvate dioxygenase; oxidoreductas	100.0
3isq_A	393	4-hydroxyphenylpyruvate dioxygenase; tyrosine meta	100.0
1t47_A	381	4-hydroxyphenylpyruvate dioxygenase; triketone inh	100.0
1cjx_A	357	4-hydroxyphenylpyruvate dioxygenase; oxidoreductas	100.0
2r5v_A	357	PCZA361.1; dioxygenase, non-heme iron, vancomycin,	100.0
3oaj_A	335	Putative ring-cleaving dioxygenase MHQO; structura	99.89
3lm4_A	339	Catechol 2,3-dioxygenase; NYSGXRC, PSI-II, protein	99.88
1f1u_A	323	Homoprotocatechuate 2,3-dioxygenase; extradiol, ma	99.87
3hpy_A	309	Catechol 2,3-dioxygenase; repeated motifs, aromati	99.87
3b59_A	310	Glyoxalase/bleomycin resistance protein/dioxygena;	99.86
1mpy_A	307	Catechol 2,3-dioxygenase; extradiol dioxygenase, n	99.86
2wl9_A	305	Catechol 2,3-dioxygenase; aromatic hydrocarbons ca	99.85
1kw3_B	292	2,3-dihydroxybiphenyl dioxygenase; four TIME repet	99.85
1lgt_A	297	Biphenyl-2,3-DIOL 1,2-dioxygenase; extradiol dioxy	99.84
2zyq_A	300	Probable biphenyl-2,3-DIOL 1,2-dioxygenase BPHC; e	99.84
1zsw_A	338	Metallo protein, glyoxalase family protein; hypoth	99.84
4ghg_A	365	Homoprotocatechuate 2,3-dioxygenase; oxygen activa	99.82
2ehz_A	302	1,2-dihydroxynaphthalene dioxygenase; extradiol di	99.82
3zi1_A	330	Glyoxalase domain-containing protein 4; isomerase;	99.79
3oxh_A	282	RV0577 protein; kinase regulation, antibiotic resi	99.75
3gm5_A	159	Lactoylglutathione lyase and related lyases; sheet	99.56
3oa4_A	161	Glyoxalase, BH1468 protein; structural genomics, p	99.55
3hdp_A	133	Glyoxalase-I; glutathione,lyase, methylglyoxal,110	99.55
3oa4_A	161	Glyoxalase, BH1468 protein; structural genomics, p	99.53
3gm5_A	159	Lactoylglutathione lyase and related lyases; sheet	99.49
3pkv_A	252	Toxoflavin lyase (TFLA); metalloenzyme, vicinal ox	99.49
3rmu_A	134	Methylmalonyl-COA epimerase, mitochondrial; struct	99.48
1jc4_A	148	Methylmalonyl-COA epimerase; vicinal oxygen chelat	99.47
3hdp_A	133	Glyoxalase-I; glutathione,lyase, methylglyoxal,110	99.47
1jc4_A	148	Methylmalonyl-COA epimerase; vicinal oxygen chelat	99.47
3rmu_A	134	Methylmalonyl-COA epimerase, mitochondrial; struct	99.43
3l7t_A	134	SMU.1112C, putative uncharacterized protein; metal	99.42
3l7t_A	134	SMU.1112C, putative uncharacterized protein; metal	99.36
4g6x_A	155	Glyoxalase/bleomycin resistance protein/dioxygena;	99.33
1ss4_A	153	Glyoxalase family protein; structural genomics, PS	99.31
3ey7_A	133	Biphenyl-2,3-DIOL 1,2-dioxygenase III-related prot	99.31
3isq_A	393	4-hydroxyphenylpyruvate dioxygenase; tyrosine meta	99.3
4hc5_A	133	Glyoxalase/bleomycin resistance protein/dioxygena;	99.29
2p25_A	126	Glyoxalase family protein; structural genomics, MC	99.29
3e5d_A	127	Putative glyoxalase I; structural genomics, joint	99.29
1ss4_A	153	Glyoxalase family protein; structural genomics, PS	99.28
2p25_A	126	Glyoxalase family protein; structural genomics, MC	99.28
4hc5_A	133	Glyoxalase/bleomycin resistance protein/dioxygena;	99.27
1f9z_A	135	Glyoxalase I; beta-alpha-beta-BETA-beta motif, pro	99.27
2c21_A	144	Trypanothione-dependent glyoxalase I; lyase, gluta	99.26
3vw9_A	187	Lactoylglutathione lyase; glyoxalase, lyase-lyase	99.25
3uh9_A	145	Metallothiol transferase FOSB 2; structural genomi	99.24
4g6x_A	155	Glyoxalase/bleomycin resistance protein/dioxygena;	99.23
1f9z_A	135	Glyoxalase I; beta-alpha-beta-BETA-beta motif, pro	99.22
2rk0_A	136	Glyoxalase/bleomycin resistance protein/dioxygena;	99.22
2za0_A	184	Glyoxalase I; lyase, lactoylglutathione lyase, met	99.21
3kol_A	156	Oxidoreductase, glyoxalase/bleomycin resistance pr	99.21
3ghj_A	141	Putative integron gene cassette protein; integron	99.21
2p7o_A	133	Glyoxalase family protein; fosfomycin resistance p	99.2
2qqz_A	126	Glyoxalase family protein, putative; alpha-beta st	99.2
3kol_A	156	Oxidoreductase, glyoxalase/bleomycin resistance pr	99.2
3ey7_A	133	Biphenyl-2,3-DIOL 1,2-dioxygenase III-related prot	99.2
3uh9_A	145	Metallothiol transferase FOSB 2; structural genomi	99.19
1r9c_A	139	Glutathione transferase; fosfomycin resistance pro	99.18
3huh_A	152	Virulence protein STM3117; structural genomics, ny	99.17
2rk0_A	136	Glyoxalase/bleomycin resistance protein/dioxygena;	99.17
2c21_A	144	Trypanothione-dependent glyoxalase I; lyase, gluta	99.15
2i7r_A	118	Conserved domain protein; structural genomics cons	99.13
2p7o_A	133	Glyoxalase family protein; fosfomycin resistance p	99.12
1r9c_A	139	Glutathione transferase; fosfomycin resistance pro	99.12
3e5d_A	127	Putative glyoxalase I; structural genomics, joint	99.11
3m2o_A	164	Glyoxalase/bleomycin resistance protein; unknown f	99.11
3r4q_A	160	Lactoylglutathione lyase; structural genomics, PSI	99.1
2qqz_A	126	Glyoxalase family protein, putative; alpha-beta st	99.1
3huh_A	152	Virulence protein STM3117; structural genomics, ny	99.08
1sp8_A	418	4-hydroxyphenylpyruvate dioxygenase; oxidoreductas	99.08
1nki_A	135	Probable fosfomycin resistance protein; potassium	99.07
1nki_A	135	Probable fosfomycin resistance protein; potassium	99.07
2pjs_A	119	AGR_C_3564P, uncharacterized protein ATU1953; glyo	99.07
1npb_A	141	Fosfomycin-resistance protein; manganese binding,	99.06
3ghj_A	141	Putative integron gene cassette protein; integron	99.06
3bqx_A	150	Glyoxalase-related enzyme; VOC superfamily, PSI-2,	99.06
1sqd_A	424	4-hydroxyphenylpyruvate dioxygenase; oxidoreductas	99.06
3zw5_A	147	Glyoxalase domain-containing protein 5; lyase; 1.6	99.06
1npb_A	141	Fosfomycin-resistance protein; manganese binding,	99.06
1twu_A	139	Hypothetical protein YYCE; structural genomics, pr	99.05
3sk2_A	132	EHPR; antibiotic resistance, griseoluteate-binding	99.05
3r4q_A	160	Lactoylglutathione lyase; structural genomics, PSI	99.04
1xqa_A	113	Glyoxalase/bleomycin resistance protein; dioxygena	99.03
1t47_A	381	4-hydroxyphenylpyruvate dioxygenase; triketone inh	99.02
2r5v_A	357	PCZA361.1; dioxygenase, non-heme iron, vancomycin,	99.02
3sk2_A	132	EHPR; antibiotic resistance, griseoluteate-binding	99.01
3vw9_A	187	Lactoylglutathione lyase; glyoxalase, lyase-lyase	99.01
3g12_A	128	Putative lactoylglutathione lyase; glyoxalase, ble	99.01
2za0_A	184	Glyoxalase I; lyase, lactoylglutathione lyase, met	99.01
2pjs_A	119	AGR_C_3564P, uncharacterized protein ATU1953; glyo	99.0
2kjz_A	144	ATC0852; protein of unknown function, dimer, struc	98.98
3zw5_A	147	Glyoxalase domain-containing protein 5; lyase; 1.6	98.98
1xrk_A	124	Bleomycin resistance protein; arm exchange, ligand	98.97
1cjx_A	357	4-hydroxyphenylpyruvate dioxygenase; oxidoreductas	98.97
2a4x_A	138	Mitomycin-binding protein; ALFA/beta protein, mito	98.95
2r6u_A	148	Uncharacterized protein; structural genomics, PSI-	98.94
3ct8_A	146	Protein BH2160, putative glyoxalase; NP_243026.1,	98.94
2i7r_A	118	Conserved domain protein; structural genomics cons	98.92
1xqa_A	113	Glyoxalase/bleomycin resistance protein; dioxygena	98.91
2rbb_A	141	Glyoxalase/bleomycin resistance protein/dioxygena;	98.91
2r6u_A	148	Uncharacterized protein; structural genomics, PSI-	98.91
3ct8_A	146	Protein BH2160, putative glyoxalase; NP_243026.1,	98.9
3rhe_A	148	NAD-dependent benzaldehyde dehydrogenase; structur	98.9
3rri_A	135	Glyoxalase/bleomycin resistance protein/dioxygena;	98.88
3itw_A	137	Protein TIOX; bleomycin resistance fold, bisinterc	98.88
3rri_A	135	Glyoxalase/bleomycin resistance protein/dioxygena;	98.87
2a4x_A	138	Mitomycin-binding protein; ALFA/beta protein, mito	98.86
3bqx_A	150	Glyoxalase-related enzyme; VOC superfamily, PSI-2,	98.85
3oaj_A	335	Putative ring-cleaving dioxygenase MHQO; structura	98.84
1ecs_A	126	Bleomycin resistance protein; arm-exchange, antibi	98.84
2kjz_A	144	ATC0852; protein of unknown function, dimer, struc	98.84
1lgt_A	297	Biphenyl-2,3-DIOL 1,2-dioxygenase; extradiol dioxy	98.84
2qnt_A	141	AGR_C_3434P, uncharacterized protein ATU1872; glyo	98.84
3g12_A	128	Putative lactoylglutathione lyase; glyoxalase, ble	98.82
3r6a_A	144	Uncharacterized protein; PSI biology, structural g	98.82
1qto_A	122	Bleomycin-binding protein; arm-exchange, antibioti	98.79
3zi1_A	330	Glyoxalase domain-containing protein 4; isomerase;	98.79
3fcd_A	134	Lyase, ORF125EGC139; lactoylglutathione lyase, YEC	98.79
2ehz_A	302	1,2-dihydroxynaphthalene dioxygenase; extradiol di	98.78
3hpy_A	309	Catechol 2,3-dioxygenase; repeated motifs, aromati	98.78
3rhe_A	148	NAD-dependent benzaldehyde dehydrogenase; structur	98.77
1kw3_B	292	2,3-dihydroxybiphenyl dioxygenase; four TIME repet	98.77
2rk9_A	145	Glyoxalase/bleomycin resistance protein/dioxygena;	98.76
3r6a_A	144	Uncharacterized protein; PSI biology, structural g	98.76
3itw_A	137	Protein TIOX; bleomycin resistance fold, bisinterc	98.73
2zyq_A	300	Probable biphenyl-2,3-DIOL 1,2-dioxygenase BPHC; e	98.72
2rbb_A	141	Glyoxalase/bleomycin resistance protein/dioxygena;	98.7
2wl9_A	305	Catechol 2,3-dioxygenase; aromatic hydrocarbons ca	98.69
3m2o_A	164	Glyoxalase/bleomycin resistance protein; unknown f	98.68
3bt3_A	148	Glyoxalase-related enzyme, ARAC type; VOC superfam	98.64
1twu_A	139	Hypothetical protein YYCE; structural genomics, pr	98.63
2rk9_A	145	Glyoxalase/bleomycin resistance protein/dioxygena;	98.55
1ecs_A	126	Bleomycin resistance protein; arm-exchange, antibi	98.53
3b59_A	310	Glyoxalase/bleomycin resistance protein/dioxygena;	98.51
3lm4_A	339	Catechol 2,3-dioxygenase; NYSGXRC, PSI-II, protein	98.5
4ghg_A	365	Homoprotocatechuate 2,3-dioxygenase; oxygen activa	98.48
4gym_A	149	Glyoxalase/bleomycin resistance protein/dioxygena;	98.47
3oxh_A	282	RV0577 protein; kinase regulation, antibiotic resi	98.47
3fcd_A	134	Lyase, ORF125EGC139; lactoylglutathione lyase, YEC	98.47
1mpy_A	307	Catechol 2,3-dioxygenase; extradiol dioxygenase, n	98.46
3bt3_A	148	Glyoxalase-related enzyme, ARAC type; VOC superfam	98.46
4gym_A	149	Glyoxalase/bleomycin resistance protein/dioxygena;	98.46
1xrk_A	124	Bleomycin resistance protein; arm exchange, ligand	98.43
1f1u_A	323	Homoprotocatechuate 2,3-dioxygenase; extradiol, ma	98.42
1zsw_A	338	Metallo protein, glyoxalase family protein; hypoth	98.41
2qnt_A	141	AGR_C_3434P, uncharacterized protein ATU1872; glyo	98.39
3pkv_A	252	Toxoflavin lyase (TFLA); metalloenzyme, vicinal ox	98.38
1xy7_A	166	Unknown protein; structural genomics, protein stru	98.36
1xy7_A	166	Unknown protein; structural genomics, protein stru	98.18
3p8a_A	274	Uncharacterized protein; mainly antiparallel beta	98.14
1qto_A	122	Bleomycin-binding protein; arm-exchange, antibioti	98.11
2zw5_A	301	Bleomycin acetyltransferase; dimer, two domains; H	98.07
1u6l_A	149	Hypothetical protein; structural genomics, PSI, pr	98.07
1u7i_A	136	Hypothetical protein; structural genomics, PA1358,	98.07
3l20_A	172	Putative uncharacterized protein; hypothetical pro	97.91
1tsj_A	139	Conserved hypothetical protein; structural genomic	97.86
3oms_A	138	PHNB protein; structural genomics, PSI-2, protein	97.71
2zw5_A	301	Bleomycin acetyltransferase; dimer, two domains; H	97.56
3e0r_A	244	C3-degrading proteinase (CPPA protein); MCSG, PSI,	97.41
1u6l_A	149	Hypothetical protein; structural genomics, PSI, pr	97.39
3p8a_A	274	Uncharacterized protein; mainly antiparallel beta	96.82
1u7i_A	136	Hypothetical protein; structural genomics, PA1358,	96.77
1tsj_A	139	Conserved hypothetical protein; structural genomic	96.76
3lho_A	267	Putative hydrolase; structural genomics, joint cen	96.6
3iuz_A	340	Putative glyoxalase superfamily protein; struct ge	96.31
3l20_A	172	Putative uncharacterized protein; hypothetical pro	96.29
1u69_A	163	Hypothetical protein; structural genomics, MSCG, p	95.87
3e0r_A	244	C3-degrading proteinase (CPPA protein); MCSG, PSI,	95.18
3oms_A	138	PHNB protein; structural genomics, PSI-2, protein	94.96
3opy_B	941	6-phosphofructo-1-kinase beta-subunit; ATP binding	84.58
1u69_A	163	Hypothetical protein; structural genomics, MSCG, p	82.82

>1sqd_A 4-hydroxyphenylpyruvate dioxygenase; oxidoreductase; 1.80A {Arabidopsis thaliana} SCOP: d.32.1.3 d.32.1.3 PDB: 1tfz_A* 1tg5_A* 1sp9_A

Probab=100.00  E-value=1.6e-89  Score=707.39  Aligned_cols=418  Identities=78%  Similarity=1.279  Sum_probs=327.8

Q ss_pred             ceEeeeccccccCCCCCCCCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCC
Q 013898           10 VKLVGFKNFVRQNPKSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPY   89 (434)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~   89 (434)
                      .||+|++||++.||+++++.+++++||+|+|+|++++++||++.|||+++++.+.+++++...++++++|+++|+|+++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~i~~i~HV~i~V~Dle~a~~FY~~~LGf~~v~~~~~~~g~~~~~~~~l~~g~~~l~L~~~~   82 (424)
T 1sqd_A            3 FKLVGFSKFVRKNPKSDKFKVKRFHHIEFWCGDATNVARRFSWGLGMRFSAKSDLSTGNMVHASYLLTSGDLRFLFTAPY   82 (424)
T ss_dssp             -----------CCCCCCSSCEEEEEEEEEECSCHHHHHHHHHHHHTCEEEEEESGGGTCSSEEEEEEEETTEEEEEEEEC
T ss_pred             ceecccccceecCCCCccccCCeEEEEEEEECCHHHHHHHHHHcCCCEEEEEEcCCCCceeEEEEEEcCCCEEEEEecCC
Confidence            58999999999999999999999999999999999999999999999999987766676677889999999999999875


Q ss_pred             CCCCCcccccCCCCCCCCCCChhHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecC
Q 013898           90 SPSISDAADAGNSSASLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYG  169 (434)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~G  169 (434)
                      ++.......+.+...+.+.|+.+.++.|+.+||.|+++|||+|+|+++++++++++|++++.+|....+++.++.|++||
T Consensus        83 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~gv~~iAf~VdDvdaa~~~l~a~Ga~~~~~P~~~~~~~~~~~i~~~G  162 (424)
T 1sqd_A           83 SPSLSAGEIKPTTTASIPSFDHGSCRSFFSSHGLGVRAVAIEVEDAESAFSISVANGAIPSSPPIVLNEAVTIAEVKLYG  162 (424)
T ss_dssp             CGGGTTTCCGGGCCCSSTTCCHHHHHHHHHHHCSEEEEEEEEESCHHHHHHHHHHTTCCEEEEEEEETTTEEEEEEEEET
T ss_pred             CCcccccccccccccccccccchHHHHHHHhcCCeEEEEEEEeCCHHHHHHHHHHcCCEEeecCcCCCCceEEEEEEcCC
Confidence            43210000000122356677767789999999999999999999999999999999999988887665678899999999


Q ss_pred             CeEEEEeeccCcCCC---CCCCCCCccCCCCCCCCcccceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCccc
Q 013898          170 DVVLRYVSYKDKANH---LDFLPGFEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTS  246 (434)
Q Consensus       170 g~~~~fvd~~~~~~~---g~~~p~f~~~~~~~~~~~~~~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~  246 (434)
                      |+.++|+++ .+ +.   ..|+|+|.+.+.....+.+.++.+||||+++|+||++|++||+++|||++.++++.+++.+.
T Consensus       163 g~~~~lvd~-~g-~~~~~~~f~p~~~~~~~~~~~~~~~~~~~idHv~i~V~dl~~a~~FY~~~LGf~~~~~~~~~d~~~~  240 (424)
T 1sqd_A          163 DVVLRYVSY-KA-EDTEKSEFLPGFERVEDASSFPLDYGIRRLDHAVGNVPELGPALTYVAGFTGFHQFAEFTADDVGTA  240 (424)
T ss_dssp             TEEEEEEEE-CC-C------CCTTCEECCTTTCCCCCSSEEEEEEEEEECSCHHHHHHHHHHHHCCEEEEEEC-------
T ss_pred             CcEEEEEec-CC-CCCCccccCCCcccccccccCCCcCCcceEeeEEEeeCCHHHHHHHHHHhhCCeEEEEEcccccccc
Confidence            999999996 22 32   24888887654322124556899999999999999999999999999999998865566667


Q ss_pred             ccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCch
Q 013898          247 ESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPT  326 (434)
Q Consensus       247 ~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~  326 (434)
                      .+|++|++|.++++.++|+|+++..++.++||+++|++++.|+|+|||||.|+||.+++++|++++..+|++++++||++
T Consensus       241 ~~gl~s~~l~~~~g~~~l~l~e~~~~~~~~s~i~~fl~~~~G~G~~HIAf~vdDI~~a~~~L~~r~~~~Gv~~l~~pp~~  320 (424)
T 1sqd_A          241 ESGLNSAVLASNDEMVLLPINEPVHGTKRKSQIQTYLEHNEGAGLQHLALMSEDIFRTLREMRKRSSIGGFDFMPSPPPT  320 (424)
T ss_dssp             -CCEEEEEEECTTSCSEEEEEEECCC---CCHHHHHHHHHTSCEEEEEEEEESCHHHHHHHHHHHGGGTSCCBCCCCCHH
T ss_pred             cccceEEEEEcCCCcEEEEEecccccCCCcchhhhhhhhcCCCCcCEEEEEeCCHHHHHHHHHhhhccCCcEEecCCCcc
Confidence            78899999999989999999999643246899999999888999999999999999999999992222299999987799


Q ss_pred             hhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEEEEccccCCCCCeEEEEEEeeccccccccCcccccCCCCCcCC
Q 013898          327 YYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFTKPVGDRPTIFIEIIQRVGCMLKDEEGKTYQKGGCGGFGK  406 (434)
Q Consensus       327 YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llqifT~~~~~r~~~FfEiIqR~g~~~~~~~~~~~~~~~~~GFG~  406 (434)
                      ||++|.+|++.+++++++++|++++||||+|++|+||||||+|+++|||||||||||+|++++|++||++|++||+|||+
T Consensus       321 YY~~l~~r~~~~~~~~~~~~l~~~~IL~D~d~~g~llqift~~~~~~pt~FfEiIqR~g~~~~~~~~~~~~~~~~~gFG~  400 (424)
T 1sqd_A          321 YYQNLKKRVGDVLSDDQIKECEELGILVDRDDQGTLLQIFTKPLGDRPTIFIEIIQRVGCMMKDEEGKAYQSGGCGGFGK  400 (424)
T ss_dssp             HHHHHHHHHTTTSCHHHHHHHHHHTCEEEECSSEEEEEEEBCCSSSSSCCEEEEEEEEECBC-------CBCTTTTCSST
T ss_pred             hhHHHHHhhccccchhhHHHHHHcCeEEecCCCCeEEEEEccccCCCCceEEEEEEEcCccccccccchhhcccCCcccc
Confidence            99999999998889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHHHhCCCccc
Q 013898          407 GNFSELFKSIEEYEKTLGAKPVA  429 (434)
Q Consensus       407 gN~~aLf~aie~~~~~~~~~~~~  429 (434)
                      |||||||||||++|+++++|..+
T Consensus       401 gNf~aLfe~ie~~~~~~~~~~~~  423 (424)
T 1sqd_A          401 GNFSELFKSIEEYEKTLEAKQLV  423 (424)
T ss_dssp             THHHHHHHHC-------------
T ss_pred             ccHHHHHHHHHHHHHhhcccccC
Confidence            99999999999999999998653

>1sp8_A 4-hydroxyphenylpyruvate dioxygenase; oxidoreductase; 2.00A {Zea mays} SCOP: d.32.1.3 d.32.1.3

Probab=100.00  E-value=3.2e-89  Score=703.98  Aligned_cols=405  Identities=67%  Similarity=1.097  Sum_probs=343.3

Q ss_pred             cceEeeeccccccCCCCCCCCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcC
Q 013898            9 LVKLVGFKNFVRQNPKSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAP   88 (434)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p   88 (434)
                      -.||+|++||++.||+++++.+++++||+|+|+|++++++||++.|||+++++.++++|++...++++++|+++|+|+++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~i~~l~hV~i~V~Dle~a~~fY~~~LGf~~~~~~~~~~G~~~~~~~~~~~G~~~l~L~~~   87 (418)
T 1sp8_A            8 AFRLVGHRNFVRFNPRSDRFHTLAFHHVELWCADAASAAGRFSFGLGAPLAARSDLSTGNSAHASLLLRSGSLSFLFTAP   87 (418)
T ss_dssp             -----------CCCCCCCSSCEEEEEEEEEECSCHHHHHHHHHHHHTCCEEEEESGGGTCCSEEEEEEEETTEEEEEEEE
T ss_pred             ccccccccchhhcCCCCccccCceEEEEEEEeCCHHHHHHHHHHhCCCEEEEEEcCCCCCcceEEEEEeeCCEEEEEecC
Confidence            36899999999999999999999999999999999999999999999999999877777666788999999999999987


Q ss_pred             CCCCCCcccccCCCCCCCCCCChhHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEec
Q 013898           89 YSPSISDAADAGNSSASLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLY  168 (434)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~  168 (434)
                      ..+..      +....+++.|+.+.+++|+.+||+|+++|||+|+|+++++++++++|++++.+|....+++.++.|++|
T Consensus        88 ~~~~~------~~~~~p~~~~~~~~~~~~~~~hg~gv~~iAf~V~Dv~~a~~~l~~~Ga~~~~~p~~~~~~~~~~~i~~~  161 (418)
T 1sp8_A           88 YAHGA------DAATAALPSFSAAAARRFAADHGLAVRAVALRVADAEDAFRASVAAGARPAFGPVDLGRGFRLAEVELY  161 (418)
T ss_dssp             CCSSC------CGGGCSSTTCCHHHHHHHHHHHSSEEEEEEEEESCHHHHHHHHHTTTCCEEEEEEEEETTEEEEEEEEE
T ss_pred             CCCcc------cccccccccccchhHHHHHhhcCCeeEEEEEEeCCHHHHHHHHHHCCCEEEeccccccCceEEEEEecC
Confidence            64320      001235566666788999999999999999999999999999999999998888765567889999999


Q ss_pred             CCeEEEEeeccCcCCCC--CCCCCCccCCCCCCCCcccceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCccc
Q 013898          169 GDVVLRYVSYKDKANHL--DFLPGFEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTS  246 (434)
Q Consensus       169 Gg~~~~fvd~~~~~~~g--~~~p~f~~~~~~~~~~~~~~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~  246 (434)
                      |++.++|+++.+  +.+  .|+|+|.+.+..  .+.+.++.+||||+++|+||++|++||+++|||++.++++.+++.+.
T Consensus       162 Gg~~~~lvd~~~--~~~~~~f~p~~~~~~~~--~~~~~~~~~idHv~i~V~dl~~a~~FY~~vLGf~~~~~~~~~d~~~~  237 (418)
T 1sp8_A          162 GDVVLRYVSYPD--GAAGEPFLPGFEGVASP--GAADYGLSRFDHIVGNVPELAPAAAYFAGFTGFHEFAEFTTEDVGTA  237 (418)
T ss_dssp             TTEEEEEEECCT--TGGGSSSSTTCEECCCT--TCCCCSEEEEEEEEEECSCHHHHHHHHHHHHCCEEEEEEEC------
T ss_pred             CCEEEEEEccCC--CCCCcccCCCCcccCCC--CCCCCCcceEeeEEEecCCHHHHHHHHHHHcCCEEEEEecccccccc
Confidence            999999999632  323  488998755321  23456799999999999999999999999999999998865566666


Q ss_pred             ccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcCCCCceEEEEEeCCHHHHHHHHHH----hcCCCCceeccC
Q 013898          247 ESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRK----RSGVGGFEFMPS  322 (434)
Q Consensus       247 ~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G~GvqHIAf~vdDI~~av~~L~~----~~~~~Gv~fl~~  322 (434)
                      ++|+++.+|.++++.++|+|++|..++.++|++++|++.+.|+|+|||||.|+||.+++++|++    .    |++|+++
T Consensus       238 ~~gl~s~~l~~~~g~i~l~l~e~~~~~~~~s~i~~fl~~~~G~G~~HIAf~vdDI~~a~~~L~~r~~~~----Gv~~l~~  313 (418)
T 1sp8_A          238 ESGLNSMVLANNSENVLLPLNEPVHGTKRRSQIQTFLDHHGGPGVQHMALASDDVLRTLREMQARSAMG----GFEFMAP  313 (418)
T ss_dssp             --CEEEEEEECSSSCCEEEEEEECCCSSSCCHHHHHHHHHTSSEEEEEEEEETTHHHHHHHHHTSGGGT----SCCBCCC
T ss_pred             cccceEEEEEcCCCcEEEEEeecccccCCCcchhhhhhccCCCCcCEEEEEeCCHHHHHHHHhhhhccC----CeEEccC
Confidence            7889999999998999999999964324689999999988899999999999999999999999    7    9999998


Q ss_pred             CCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEEEEccccCCCCCeEEEEEEeeccccccccCcccccCCCC
Q 013898          323 PPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFTKPVGDRPTIFIEIIQRVGCMLKDEEGKTYQKGGCG  402 (434)
Q Consensus       323 pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llqifT~~~~~r~~~FfEiIqR~g~~~~~~~~~~~~~~~~~  402 (434)
                      ||++||++|.+|++.+++++++++|+++|||||+|++|+||||||+|+++|||||||||||+|++++|++||++|++||+
T Consensus       314 Pp~~YY~~l~~r~~~~~~~~~~~~l~~~~IL~D~d~~g~llqift~~~~~~pt~FfEiIqR~g~~~~~~~~~~~~~~~~~  393 (418)
T 1sp8_A          314 PTSDYYDGVRRRAGDVLTEAQIKECQELGVLVDRDDQGVLLQIFTKPVGDRPTLFLEIIQRIGCMEKDEKGQEYQKGGCG  393 (418)
T ss_dssp             CCHHHHHHHHHHHTTTSCHHHHHHHHHHTCEEEECSSEEEEEEEBCCSSSSSCCEEEEEEEEECCCCSSSCSCCCCTTTT
T ss_pred             CCcchhHHHHHhhccccchhhHHHHHHhCcEEecCCCCeEEEEEecccCCCCceEEEEEEeeCccccccccchhhccCCC
Confidence            77999999999999888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCCccHHHHHHHHHHHHHHhCCCc
Q 013898          403 GFGKGNFSELFKSIEEYEKTLGAKP  427 (434)
Q Consensus       403 GFG~gN~~aLf~aie~~~~~~~~~~  427 (434)
                      |||+|||||||||||++|++|++|.
T Consensus       394 gFg~gNf~aLfeaie~~~~~~~~~~  418 (418)
T 1sp8_A          394 GFGKGNFSQLFKSIEDYEKSLEAKQ  418 (418)
T ss_dssp             CSSGGGHHHHHHHHHHHHTTC----
T ss_pred             CcccccHHHHHHHHHHHHHhhccCC
Confidence            9999999999999999999999873

>3isq_A 4-hydroxyphenylpyruvate dioxygenase; tyrosine metabolism, DIS mutation, iron, mental retardation, metal-binding, oxidored phenylalanine catabolism; 1.75A {Homo sapiens} PDB: 1sqi_A*

Probab=100.00  E-value=8.6e-85  Score=663.79  Aligned_cols=363  Identities=38%  Similarity=0.608  Sum_probs=324.1

Q ss_pred             CCCCCCCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCC
Q 013898           23 PKSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNS  102 (434)
Q Consensus        23 ~~~~~~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~  102 (434)
                      ++++++.+++++||+|+|+|++++++||++.|||+++++.++++|.+..+++++++|++.|+|++|+.++.         
T Consensus         2 ~~~~~~~i~~i~Hv~i~V~d~~~a~~fY~~~LGf~~v~~~~~e~g~r~~~~~~l~~G~i~~~L~~p~~p~s---------   72 (393)
T 3isq_A            2 AKPERGRFLHFHSVTFWVGNAKQAASFYCSKMGFEPLAYRGLETGSREVVSHVIKQGKIVFVLSSALNPWN---------   72 (393)
T ss_dssp             CCCSSCEEEEEEEEEEECSCHHHHHHHHHHHHCCEEEEEESGGGTCCSEEEEEEEETTEEEEEEEESSTTC---------
T ss_pred             CCCCCCCCceEeEEEEEECCHHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEEEEecCCEEEEEecCCCCCc---------
Confidence            56788999999999999999999999999999999999988878877778899999999999999875430         


Q ss_pred             CCCCCCCChhHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCcccc---CceEEEEEEecCCeEEEEeecc
Q 013898          103 SASLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILD---NLAVIAEVQLYGDVVLRYVSYK  179 (434)
Q Consensus       103 ~~~~~~~~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~---~~~~~~~i~~~Gg~~~~fvd~~  179 (434)
                               .++++|+++||+|+++|||+|+|+++++++|+++|++++.+|+...   +++.+|+|+++||++|+|+|+ 
T Consensus        73 ---------~~~a~fl~~hG~Gv~~iAf~VdDvdaa~~ra~a~Ga~~v~eP~~~~~~~G~v~~a~I~~~Gd~~h~lVdr-  142 (393)
T 3isq_A           73 ---------KEMGDHLVKHGDGVKDIAFEVEDCDYIVQKARERGAKIMREPWVEQDKFGKVKFAVLQTYGDTTHTLVEK-  142 (393)
T ss_dssp             ---------HHHHHHHHHHCSEEEEEEEEEECHHHHHHHHHHHTCCEEEEEEEEEETTEEEEEEEEECSTTCEEEEEEE-
T ss_pred             ---------hHHHHHHHhcCCcEEEEEEEeCCHHHHHHHHHHCCCeEecCccccccCCceeEEEEEEeCCCcEEEEecc-
Confidence                     2689999999999999999999999999999999999999887543   347899999999999999996 


Q ss_pred             CcCCCCCCCCCCccCCCCC---CCCcccceeeeeeeeEecCC--HHHHHHHHHHhhCCeeeeeeecccCcccccCceEEE
Q 013898          180 DKANHLDFLPGFEPTDEIS---SFPLDYGIRRLDHAVGNVPE--LAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVV  254 (434)
Q Consensus       180 ~~~~~g~~~p~f~~~~~~~---~~~~~~~l~~iDHv~i~V~d--l~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~  254 (434)
                       ..|.+.|+|+|.+.....   ..+.+.++++||||+++|++  |++|++||+++|||++.+.++.+++.+.++|++|.+
T Consensus       143 -~~y~~~flpg~~~~~~~~~~~~~~~~~~l~~IDHv~i~V~~~~l~~a~~fY~~~lGf~~~~~~d~~~i~~~~~gl~s~~  221 (393)
T 3isq_A          143 -MNYIGQFLPGYEAPAFMDPLLPKLPKCSLEMIDHIVGNQPDQEMVSASEWYLKNLQFHRFWSVDDTQVHTEYSSLRSIV  221 (393)
T ss_dssp             -ESCCSSSCTTCBSCSCCCTTGGGSCCCCEEEEEEEEEECCTTCHHHHHHHHHHHHCCEEEEEECTTTSBCSSCEEEEEE
T ss_pred             -ccCcCCCCCCccccccccccccCCCCCCeeEEeEEEEecCccHHHHHHHHHHHHhCCEEeccccccccccCCCcEEEEE
Confidence             468889999998653111   01345689999999999997  999999999999999999876555666778999999


Q ss_pred             EEcCCCceEEEecccCCCCCCCchHHHHHhhcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhh
Q 013898          255 LANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNR  334 (434)
Q Consensus       255 l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R  334 (434)
                      |.++++.++|+|++|..+ ..+|||++||++++|+|+|||||.|+||.+++++|+++    |++|+++ |++||++|.+|
T Consensus       222 ~~~~~g~v~i~L~ep~~~-~~~s~I~~fL~~~~G~Gi~HiA~~~dDi~~~~~~l~~~----Gv~~l~~-P~~YY~~l~~r  295 (393)
T 3isq_A          222 VANYEESIKMPINEPAPG-KKKSQIQEYVDYNGGAGVQHIALKTEDIITAIRHLRER----GLEFLSV-PSTYYKQLREK  295 (393)
T ss_dssp             EECTTSSCEEEEEEEECC-SBCCHHHHHHHHHTSSEEEEEEEEESCHHHHHHHHHHT----TCCBCCC-CHHHHHHHHHH
T ss_pred             EECCCCCEEEEEecCCCC-CCCCHHHHHHHHcCCCCcceEEEEcCCHHHHHHHHHHc----CCccCCC-CccHHHHHHHH
Confidence            999999999999999743 36899999999999999999999999999999999999    9999986 59999999999


Q ss_pred             cCC--CCChhHHHHHHhcCeEEecCCCceEEEEEccccCCCCCeEEEEEEeeccccccccCcccccCCCCCcCCccHHHH
Q 013898          335 AGD--VLTDEQIKQCEELGVLVDRDDQGTLLQIFTKPVGDRPTIFIEIIQRVGCMLKDEEGKTYQKGGCGGFGKGNFSEL  412 (434)
Q Consensus       335 ~~~--~l~~~~~~~l~~~~iL~D~d~~g~llqifT~~~~~r~~~FfEiIqR~g~~~~~~~~~~~~~~~~~GFG~gN~~aL  412 (434)
                      ++.  +..++++++|+++|||||+|++||||||||+|+++|||||||||||+|+               +|||+||||||
T Consensus       296 ~~~~~~~~~e~~~~l~~~~IL~D~d~~g~llQifT~~~~~rpt~FfEiIqR~g~---------------~GFG~gNf~aL  360 (393)
T 3isq_A          296 LKTAKIKVKENIDALEELKILVDYDEKGYLLQIFTKPVQDRPTLFLEVIQRHNH---------------QGFGAGNFNSL  360 (393)
T ss_dssp             HTTCSSCCCSCHHHHHHHTCEEEECSSCEEEEEEBCCSSSSSCCEEEEEEEESC---------------CSCCHHHHHHH
T ss_pred             hccccccccccHHHHHhcCcEEccCCCceEEEEEeeccCCCCceEEEEEEEcCC---------------CccChhhHHHH
Confidence            982  2346999999999999999999999999999999999999999999997               99999999999


Q ss_pred             HHHHHHHHHHhCCC
Q 013898          413 FKSIEEYEKTLGAK  426 (434)
Q Consensus       413 f~aie~~~~~~~~~  426 (434)
                      |||||++|..-+.-
T Consensus       361 feaiE~eq~~rg~l  374 (393)
T 3isq_A          361 FKAFEEEQNLRGNL  374 (393)
T ss_dssp             HHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHhcCCc
Confidence            99999999876543

>1t47_A 4-hydroxyphenylpyruvate dioxygenase; triketone inhibitor, iron, oxidoreductase; HET: NTD; 2.50A {Streptomyces avermitilis} SCOP: d.32.1.3 d.32.1.3

Probab=100.00  E-value=2.6e-73  Score=579.67  Aligned_cols=355  Identities=39%  Similarity=0.628  Sum_probs=305.7

Q ss_pred             CCCCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCC
Q 013898           26 DRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSAS  105 (434)
Q Consensus        26 ~~~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~  105 (434)
                      .++.+++++||+|+|+|++++++||+++|||+++++.+++++++...++++++|+++|+|+++.++.             
T Consensus        16 ~~~~i~~i~hV~i~V~D~~~a~~FY~~~LGf~~~~~~~~~~~~~~~~~~~~~~g~~~l~l~~~~~~~-------------   82 (381)
T 1t47_A           16 DPFPVKGMDAVVFAVGNAKQAAHYYSTAFGMQLVAYSGPENGSRETASYVLTNGSARFVLTSVIKPA-------------   82 (381)
T ss_dssp             CCSCCCEEEEEEEECSCHHHHHHHHHHTSCCEEEEEESGGGTCCSEEEEEEEETTEEEEEEEESSCC-------------
T ss_pred             CCCcCceEEEEEEEECCHHHHHHHHHHcCCCEEEEEEcCCCCCceEEEEEEecCCEEEEEecCCCCC-------------
Confidence            3567999999999999999999999999999999987666666666789999999999999875432             


Q ss_pred             CCCCChhH----HhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccc---cCceEEEEEEecCCeEEEEeec
Q 013898          106 LPTFDHAA----CRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVIL---DNLAVIAEVQLYGDVVLRYVSY  178 (434)
Q Consensus       106 ~~~~~~~~----~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~---~~~~~~~~i~~~Gg~~~~fvd~  178 (434)
                            +.    +..|+.+||+|+++|||+|+|+++++++++++|++++.+|...   .+++.++.|++|||+.++|+++
T Consensus        83 ------~~~~~~~~~~~~~~g~gv~~iaf~V~D~~~~~~~l~~~G~~~~~~p~~~~~~~g~~~~~~~~~pgg~~~~lv~~  156 (381)
T 1t47_A           83 ------TPWGHFLADHVAEHGDGVVDLAIEVPDARAAHAYAIEHGARSVAEPYELKDEHGTVVLAAIATYGKTRHTLVDR  156 (381)
T ss_dssp             ------SHHHHHHHHHHHHHCSEEEEEEEECSCHHHHHHHHHHTTCCEEEEEEEEEETTEEEEEEEEECSTTCEEEEEEE
T ss_pred             ------CcchhHHHHHHHhcCCceEEEEEEECCHHHHHHHHHHcCCEEeeccccccCCCCeEEEEEEecCCCcEEEEEec
Confidence                  22    5788999999999999999999999999999999988777642   2346789999999999999996


Q ss_pred             cCcCCCCCCCCCCccCCCCCCCCcccceeeeeeeeEecC--CHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEE
Q 013898          179 KDKANHLDFLPGFEPTDEISSFPLDYGIRRLDHAVGNVP--ELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLA  256 (434)
Q Consensus       179 ~~~~~~g~~~p~f~~~~~~~~~~~~~~l~~iDHv~i~V~--dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~  256 (434)
                        ..|.+.|+|++.+.+.....+.+.++++||||+++|+  |+++|++||+++|||++.+.++..++.+..+++++.++.
T Consensus       157 --~~~~~~f~p~~~~~~~~~~~~~~~~~~~idHv~l~V~~~dl~~a~~FY~~vLGf~~~~~~~~~~i~~~~~~~~~~~l~  234 (381)
T 1t47_A          157 --TGYDGPYLPGYVAAAPIVEPPAHRTFQAIDHCVGNVELGRMNEWVGFYNKVMGFTNMKEFVGDDIATEYSALMSKVVA  234 (381)
T ss_dssp             --EEECSSSSTTCEECCCSSCCCSSCSCCEEEEEEEECCTTCHHHHHHHHHHHHCCEECSCCBCHHHHTTTTSEEEEEEE
T ss_pred             --CCCCCCCCCCCccccccccCCCCCCceEEeEEEEeeccccHHHHHHHHHHhhCCEEeeecCcceeccCCccEEEEEEE
Confidence              2355678898854321111234567999999999999  999999999999999998775422233345678999998


Q ss_pred             cCCCceEEEecccCCCCCCCchHHHHHhhcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcC
Q 013898          257 NNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAG  336 (434)
Q Consensus       257 ~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~  336 (434)
                      ++++.++|+|+++..+ ..+|++++|++.++|+|+|||||.|+||.+++++|+++    |++++.. |.+||++|+.|++
T Consensus       235 ~~~g~v~i~l~~~~~~-~~~s~~~~~l~~~~g~Gv~HiAf~vdDi~~~~~~L~~~----Gv~~~~~-p~~Yy~~l~~R~~  308 (381)
T 1t47_A          235 DGTLKVKFPINEPALA-KKKSQIDEYLEFYGGAGVQHIALNTGDIVETVRTMRAA----GVQFLDT-PDSYYDTLGEWVG  308 (381)
T ss_dssp             CTTSCSEEEEEEECCS-SSCCHHHHHHHHHTSCEEEEEEEECSCHHHHHHHHHHT----TCCBCCC-CGGGTTSHHHHHC
T ss_pred             CCCCcEEEEEecCCcC-CCccHHHHHHHHhCCCCcceEEEecCCHHHHHHHHHHc----CCccCCC-CccHHHHHHHhcc
Confidence            8888899999998632 36899999999878899999999999999999999999    9999987 6999999999998


Q ss_pred             CCCChhHHHHHHhcCeEEecCCCceEEEEEccccCCCCCeEEEEEEeeccccccccCcccccCCCCCcCCccHHHHHHHH
Q 013898          337 DVLTDEQIKQCEELGVLVDRDDQGTLLQIFTKPVGDRPTIFIEIIQRVGCMLKDEEGKTYQKGGCGGFGKGNFSELFKSI  416 (434)
Q Consensus       337 ~~l~~~~~~~l~~~~iL~D~d~~g~llqifT~~~~~r~~~FfEiIqR~g~~~~~~~~~~~~~~~~~GFG~gN~~aLf~ai  416 (434)
                        .+++++++|++++||||+|++|+||||||+|+++|||||||||||+|+               +|||+||||||||||
T Consensus       309 --~~~~~~~~l~~~~il~d~d~~g~llqift~~~~~~pt~f~E~iqR~g~---------------~gfg~gN~~alf~~i  371 (381)
T 1t47_A          309 --DTRVPVDTLRELKILADRDEDGYLLQIFTKPVQDRPTVFFEIIERHGS---------------MGFGKGNFKALFEAI  371 (381)
T ss_dssp             --CCSSCHHHHHHHTCEEEECSSCEEEEEEBCCSSSSSCCEEEEEEEEBC---------------CCCSTHHHHHHHHHH
T ss_pred             --ccchhHHHHHHhCeEEeeCCCCeEEEEeccCCCCCCeeEEEEEEEcCC---------------CccchhhHHHHHHHH
Confidence              679999999999999999999999999999999999999999999997               999999999999999


Q ss_pred             HHHHHHhC
Q 013898          417 EEYEKTLG  424 (434)
Q Consensus       417 e~~~~~~~  424 (434)
                      |++|..-+
T Consensus       372 e~~q~~rg  379 (381)
T 1t47_A          372 EREQEKRG  379 (381)
T ss_dssp             HHHHHC--
T ss_pred             HHHHHHhc
Confidence            99997543

>1cjx_A 4-hydroxyphenylpyruvate dioxygenase; oxidoreductase, iron; 2.40A {Pseudomonas fluorescens} SCOP: d.32.1.3 d.32.1.3

Probab=100.00  E-value=3.5e-65  Score=515.20  Aligned_cols=338  Identities=28%  Similarity=0.465  Sum_probs=287.2

Q ss_pred             CCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCC
Q 013898           28 FRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLP  107 (434)
Q Consensus        28 ~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~  107 (434)
                      +.+++++||+|+|+|++++.+|| +.|||+++++..      ...++++++|+++|+++..  +                
T Consensus         8 ~~i~~l~hV~~~V~D~~~~~~fy-~~LGf~~~~~~~------~~~~~l~~~g~~~l~l~~~--~----------------   62 (357)
T 1cjx_A            8 MGLMGFEFIEFASPTPGTLEPIF-EIMGFTKVATHR------SKNVHLYRQGEINLILNNE--P----------------   62 (357)
T ss_dssp             TCEEEEEEEEEECSSTTSSHHHH-HHTTCEEEEEES------SSSEEEEEETTEEEEEECC--S----------------
T ss_pred             cccceEEEEEEEeCCHHHHHHHH-HHCCCEEEEEeC------CeeEEEEecCCEEEEEECC--C----------------
Confidence            46999999999999999999999 799999998753      1247889999999999862  1                


Q ss_pred             CCChhHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEeeccCcCCCC-C
Q 013898          108 TFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSYKDKANHL-D  186 (434)
Q Consensus       108 ~~~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd~~~~~~~g-~  186 (434)
                         .+.+..|+.+||+|+++|||+|+|+++++++++++|++++..|... ++..++.+++||++.++|+++ . .+.+ .
T Consensus        63 ---~~~~~~~~~~~g~gv~~iaf~V~D~~~~~~~l~~~G~~~~~~~~~~-g~~~~~~~~~~gg~~~~~vd~-~-~~~~~~  136 (357)
T 1cjx_A           63 ---NSIASYFAAEHGPSVCGMAFRVKDSQKAYNRALELGAQPIHIDTGP-MELNLPAIKGIGGAPLYLIDR-F-GEGSSI  136 (357)
T ss_dssp             ---SSHHHHHHHHHSSEEEEEEEEESCHHHHHHHHHHTTCCBCCCCCCT-TCBCCCEEECGGGCEEEEECC-C-SSSCCH
T ss_pred             ---CchhhhhhhhcCCeEEEEEEEeCCHHHHHHHHHHcCCEEeecCCCC-CcEEEEeeeCCCCeEEEEECC-C-CCCCCc
Confidence               1346788899999999999999999999999999999987776443 556788899999999999996 2 2333 3


Q ss_pred             CCCCCccCCCCCCCCcccceeeeeeeeEecC--CHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEE
Q 013898          187 FLPGFEPTDEISSFPLDYGIRRLDHAVGNVP--ELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLL  264 (434)
Q Consensus       187 ~~p~f~~~~~~~~~~~~~~l~~iDHv~i~V~--dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i  264 (434)
                      |+|+|.+.......+.+.++++||||+++|+  |+++|++||+++|||++.+.++.   .+..++++++++..+++.++|
T Consensus       137 ~~~~f~~~~~~~~~~~~~~i~~idHv~l~V~~~dl~~a~~FY~~vLGf~~~~~~~~---~~~~~~~~~~~~~~~~g~~~i  213 (357)
T 1cjx_A          137 YDIDFVYLEGVERNPVGAGLKVIDHLTHNVYRGRMVYWANFYEKLFNFREARYFDI---KGEYTGLTSKAMSAPDGMIRI  213 (357)
T ss_dssp             HHHHEEECTTCCSSCCTTSEEEEEEECEECCTTHHHHHHHHHHHHHCCEEEEEEEE---ECSSCEEEEEEEECTTSSCEE
T ss_pred             CCCCcccCCccccCCCCCCeeEECceEEeechhhHHHHHHHHHHhhCCceeeEEEe---ccCCcceEEEEEECCCCCEEE
Confidence            6677765432111234568999999999999  99999999999999999876542   122456778888888888999


Q ss_pred             Eeccc-CCCCCCCchHHHHHhhcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhH
Q 013898          265 PMNEP-VFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQ  343 (434)
Q Consensus       265 ~L~e~-~~g~~~~s~i~~fl~~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~  343 (434)
                      +|+++ .   ...+++++|++.+.++|+|||||.|+||++++++|+++    |++++..+|++||++|+.|++  .+++.
T Consensus       214 ~L~~~~~---~~~~~~~~~~~~~~g~g~~HiAf~v~Di~~~~~~L~~~----Gv~~~~~~p~~Yy~~l~~r~~--~~~~~  284 (357)
T 1cjx_A          214 PLNEESS---KGAGQIEEFLMQFNGEGIQHVAFLTDDLVKTWDALKKI----GMRFMTAPPDTYYEMLEGRLP--DHGEP  284 (357)
T ss_dssp             EEEEECT---TCCSHHHHHHHHHTSSBCCEEEEEESCHHHHHHHHHHT----TCCBCCCCCHHHHHTHHHHST--TCCCC
T ss_pred             EEeeecC---CCCChHHHhHHhcCCCCeeEEEEEcCCHHHHHHHHHHc----CCcccCCCChHHHHHHHHHhc--ccccc
Confidence            99998 4   35789999998777899999999999999999999999    999998346999999999998  67899


Q ss_pred             HHHHHhcCeEEecC----CCceEEEEEccccCCCCCeEEEEEEeeccccccccCcccccCCCCCcCCccHHHHHHHHHHH
Q 013898          344 IKQCEELGVLVDRD----DQGTLLQIFTKPVGDRPTIFIEIIQRVGCMLKDEEGKTYQKGGCGGFGKGNFSELFKSIEEY  419 (434)
Q Consensus       344 ~~~l~~~~iL~D~d----~~g~llqifT~~~~~r~~~FfEiIqR~g~~~~~~~~~~~~~~~~~GFG~gN~~aLf~aie~~  419 (434)
                      ++.|++++||||+|    ++|+||||||+|++ +| +|||||||+|+               +|||+|||+|||||||++
T Consensus       285 ~~~l~~~~il~d~d~~~~~~g~llqift~~~~-~~-~f~E~iqr~~~---------------~gfg~~n~~~l~~~~e~~  347 (357)
T 1cjx_A          285 VDQLQARGILLDGSSVEGDKRLLLQIFSETLM-GP-VFFEFIQRKGD---------------DGFGEGNFKALFESIERD  347 (357)
T ss_dssp             HHHHHHHTCEEEEEEETTEEEEEEEEEBCCCB-TT-BEEEEEEEEBC---------------CSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCeEEecCCCCCCCCeEEEEeccCCC-Cc-eEEEEEEEcCc---------------CccccccHHHHHHHHHHH
Confidence            99999999999999    88999999999999 55 99999999997               999999999999999999


Q ss_pred             HHHhCC
Q 013898          420 EKTLGA  425 (434)
Q Consensus       420 ~~~~~~  425 (434)
                      |..-+.
T Consensus       348 q~~rg~  353 (357)
T 1cjx_A          348 QVRRGV  353 (357)
T ss_dssp             HHHHTC
T ss_pred             HHHhCC
Confidence            987553

>2r5v_A PCZA361.1; dioxygenase, non-heme iron, vancomycin, oxidoreductase; HET: HHH; 2.30A {Amycolatopsis orientalis}

Probab=100.00  E-value=7.4e-64  Score=504.80  Aligned_cols=347  Identities=27%  Similarity=0.445  Sum_probs=292.6

Q ss_pred             CCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCC
Q 013898           28 FRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLP  107 (434)
Q Consensus        28 ~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~  107 (434)
                      |.+++++||+|+|+|++++++||++.|||+++++...+++    .++++++|+++++|+.+..+.               
T Consensus         1 ~~i~~l~hv~~~v~D~~~a~~fy~~~LGf~~~~~~~~~~g----~~~~~~~g~~~l~l~~~~~~~---------------   61 (357)
T 2r5v_A            1 MQNFEIDYVEMYVENLEVAAFSWVDKYAFAVAGTSRSADH----RSIALRQGQVTLVLTEPTSDR---------------   61 (357)
T ss_dssp             -CCCEEEEEEEECSCHHHHHHHHHHHHCCEEEEEEEETTE----EEEEEEETTEEEEEEEESSTT---------------
T ss_pred             CCCceEEEEEEEECCHHHHHHHHHHcCCCeEEEEEcCCCc----eEEEEEeCCEEEEEeCCCCCC---------------
Confidence            4589999999999999999999999999999988653332    578889999999999764332               


Q ss_pred             CCChhHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccc-cCceEEEEEEecCCeEEEEeeccCcCCCCC
Q 013898          108 TFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVIL-DNLAVIAEVQLYGDVVLRYVSYKDKANHLD  186 (434)
Q Consensus       108 ~~~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~-~~~~~~~~i~~~Gg~~~~fvd~~~~~~~g~  186 (434)
                          +.+..++..||+|+++|||+|+|+++++++++++|++++.+|... .+...++.|++|||+.++|+++ . .+.+.
T Consensus        62 ----~~~~~~~~~~g~g~~~iaf~V~D~~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~~p~g~~~~lv~~-~-~~~~~  135 (357)
T 2r5v_A           62 ----HPAAAYLQTHGDGVADIAMATSDVAAAYEAAVRAGAEAVRAPGQHSEAAVTTATIGGFGDVVHTLIQR-D-GTSAE  135 (357)
T ss_dssp             ----SHHHHHHHHHSSEEEEEEEEESCHHHHHHHHHHTTCCEEEEEECCC-CCCCEEEEECSTTCEEEEEEC-C-SSSCC
T ss_pred             ----CHHHHHHHhcCCeEEEEEEEECCHHHHHHHHHHcCCeEeECcEecCCCeEEEEEEeccCCeEEEEEec-c-cCCCC
Confidence                245677889999999999999999999999999999987777532 2456788999999999999995 2 35567


Q ss_pred             CCCCCccCCCC-CCCCcccceeeeeeeeEecC--CHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceE
Q 013898          187 FLPGFEPTDEI-SSFPLDYGIRRLDHAVGNVP--ELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVL  263 (434)
Q Consensus       187 ~~p~f~~~~~~-~~~~~~~~l~~iDHv~i~V~--dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~  263 (434)
                      |.|++.+.+.. ...+.+..+++|||++++|+  |++++++||+++|||++.+..+   .....+++++.++.++++.+.
T Consensus       136 f~p~~~~~~~~~~~~~~~~~~~~l~Hv~l~V~~~D~~~~~~FY~~vLGf~~~~~~~---~~~~~~~~~~~~l~~~~g~~~  212 (357)
T 2r5v_A          136 LPPGFTGSMDVTNHGKGDVDLLGIDHFAICLNAGDLGPTVEYYERALGFRQIFDEH---IVVGAQAMNSTVVQSASGAVT  212 (357)
T ss_dssp             CCTTCEECSCCCCTTCTTCCCCEEEEEEEECCTTCHHHHHHHHHHHHCCEEEEEEE---EEETTEEEEEEEEECTTSCCE
T ss_pred             CCCCCcccCcccccCCCCCCcceEeEEEEEEchhhHHHHHHHHHHhcCCcEEEEEe---eccCCcceEEEEEECCCCCEE
Confidence            88887543211 11234567999999999999  9999999999999999987642   112244578888888888899


Q ss_pred             EEecccCCCCCCCchHHHHHhhcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhH
Q 013898          264 LPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQ  343 (434)
Q Consensus       264 i~L~e~~~g~~~~s~i~~fl~~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~  343 (434)
                      |+|+++..+ ...+++++|+..+.++|+|||||.|+||++++++|+++    |++++.. |.+||+++..|++  ..+++
T Consensus       213 l~l~~~~~~-~~~~~~~~~~~~~~~~g~~Hiaf~v~Di~~~~~~L~~~----Gv~~~~~-p~~yy~~~~~r~~--~~~~~  284 (357)
T 2r5v_A          213 LTLIEPDRN-ADPGQIDEFLKDHQGAGVQHIAFNSNDAVRAVKALSER----GVEFLKT-PGAYYDLLGERIT--LQTHS  284 (357)
T ss_dssp             EEEEEECTT-SBCCHHHHHHHHHTSSEEEEEEEECSCHHHHHHHHHHT----TCCBCCC-CHHHHHTTTTTCC--CSSSC
T ss_pred             EEEeeecCC-CCCchhHHHHHhcCCCCccEEEEEcCCHHHHHHHHHHc----CCCcCCC-chhHHHHHHHhhc--cchhh
Confidence            999998632 24688999998777889999999999999999999999    9999987 6999999999998  67889


Q ss_pred             HHHHHhcCeEEecCCCceEEEEEccccCCCCCeEEEEEEeeccccccccCcccccCCCCCcCCccHHHHHHHHHHHHHHh
Q 013898          344 IKQCEELGVLVDRDDQGTLLQIFTKPVGDRPTIFIEIIQRVGCMLKDEEGKTYQKGGCGGFGKGNFSELFKSIEEYEKTL  423 (434)
Q Consensus       344 ~~~l~~~~iL~D~d~~g~llqifT~~~~~r~~~FfEiIqR~g~~~~~~~~~~~~~~~~~GFG~gN~~aLf~aie~~~~~~  423 (434)
                      +++|++++||||+|++|+||||||+|+.+|||||||||||+|+               +|||+|||+|||+|||++|..-
T Consensus       285 ~~~~~~~~~l~~~Dp~G~llqi~t~~~~~~~~~f~e~i~r~~~---------------~gfg~~n~~~l~~~~e~~~~~~  349 (357)
T 2r5v_A          285 LDDLRATNVLADEDHGGQLFQIFTASTHPRHTIFFEVIERQGA---------------GTFGSSNIKALYEAVELERTGQ  349 (357)
T ss_dssp             HHHHHHHTCEEEEETTEEEEEEEBCCCSTTSCCEEEEEEEEBC---------------CSCCHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHcCeEEecCCCceEEEEEccCCCCCCeEEEEEEEEcCC---------------CccccccHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999997               9999999999999999999765


Q ss_pred             CC
Q 013898          424 GA  425 (434)
Q Consensus       424 ~~  425 (434)
                      +.
T Consensus       350 ~~  351 (357)
T 2r5v_A          350 SE  351 (357)
T ss_dssp             --
T ss_pred             CC
Confidence            54

>3oaj_A Putative ring-cleaving dioxygenase MHQO; structural genomics, protein structure initiative, PSI-biolo unknown function; 1.40A {Bacillus subtilis subsp}

Probab=99.89  E-value=2.3e-21  Score=193.55  Aligned_cols=259  Identities=13%  Similarity=0.087  Sum_probs=165.1

Q ss_pred             CCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEe--C--CEEEEEEcCCCCCCCcccccCCCC
Q 013898           28 FRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRS--G--DLRFVFTAPYSPSISDAADAGNSS  103 (434)
Q Consensus        28 ~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~--G--~i~~vl~~p~~~~~~~~~~~~~~~  103 (434)
                      +.+.+|+||.+.|+|++++.+||+++|||+++.+....... ......+..  |  +..+.|.......           
T Consensus         4 ~~i~~i~Hv~l~v~Dl~~s~~FY~~vLGl~~v~~~~~~~~~-~~~~l~~~~~~g~~g~~l~l~~~~~~~-----------   71 (335)
T 3oaj_A            4 KKTMGIHHITAIVGHPQENTDFYAGVLGLRLVKQTVNFDDP-GTYHLYFGNEGGKPGTIITFFPWAGAR-----------   71 (335)
T ss_dssp             CCCCSEEEEEEEESCHHHHHHHHTTTTCCEEEEEEECSSCT-TSEEEEEESTTCCTTSEEEEEECTTCC-----------
T ss_pred             ccCCcccEEEEEeCCHHHHHHHHHHhcCCEEEeeecCCCCC-ceEEEEEecCCCCCCcEEEEEECCCCC-----------
Confidence            35899999999999999999999999999998874311100 111122332  2  3455554421100           


Q ss_pred             CCCCCCChhHHhHHHHhcC-CceeEEEEEec--CHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEeeccC
Q 013898          104 ASLPTFDHAACRSFAASHG-LAARSIAVEVE--DADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSYKD  180 (434)
Q Consensus       104 ~~~~~~~~~~~~~~l~~hG-~gv~~Iaf~V~--Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd~~~  180 (434)
                                    ....+ .++.|+||+|+  |++++++++.++|+++..  ... .......+++++|..++++....
T Consensus        72 --------------~~~~~~~~~~hiaf~V~~~dl~~~~~rL~~~Gv~~~~--~~~-~g~~~~~f~DPdGn~iEl~~~~~  134 (335)
T 3oaj_A           72 --------------QGVIGDGQVGVTSYVVPKGAMAFWEKRLEKFNVPYTK--IER-FGEQYVEFDDPHGLHLEIVEREE  134 (335)
T ss_dssp             --------------BCBCCBSEEEEEEEEECTTCHHHHHHHHHHTTCCCEE--EEE-TTEEEEEEECTTSCEEEEEECSC
T ss_pred             --------------CCCCCCCceEEEEEEecHHHHHHHHHHHHhCcceeee--ecc-CCcEEEEEECCCCCEEEEEEeCC
Confidence                          00123 37889999999  999999999999998653  211 22334456677777777777422


Q ss_pred             cCCCCCCCCCCccCCCCCCCCcccceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCC
Q 013898          181 KANHLDFLPGFEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDE  260 (434)
Q Consensus       181 ~~~~g~~~p~f~~~~~~~~~~~~~~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g  260 (434)
                      .. ...|..+       . .+....+++|+||++.|+|++++.+||+++|||+......  +       .  ..+..++.
T Consensus       135 ~~-~~~~~~~-------~-v~~~~~i~gl~Hv~L~v~Dle~t~~FY~~vLG~~~~~~~~--~-------~--~~~~~g~~  194 (335)
T 3oaj_A          135 GE-ANTWTFG-------E-VTPDVAIKGFGGATLLSEQPDKTADLLENIMGLERVGKEG--D-------F--VRYRSAGD  194 (335)
T ss_dssp             SC-CCCCCBT-------T-BCTTTSCCEEEEEEEECSSHHHHHHHHHHTSCCEEEEEET--T-------E--EEEECSSS
T ss_pred             CC-cCCCcCC-------C-CChhhhhccccceEEEECCHHHHHHHHHHHhCCEEeeccC--C-------E--EEEEeCCC
Confidence            11 0012111       0 2234578999999999999999999999999999886521  0       1  12222222


Q ss_pred             ceEEEecccCCCCCCCchHHHHHhhcCCC-CceEEEEEeCC---HHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcC
Q 013898          261 MVLLPMNEPVFGTKRKSQIQTYLEHNEGA-GVQHLALVSED---IFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAG  336 (434)
Q Consensus       261 ~v~i~L~e~~~g~~~~s~i~~fl~~~~G~-GvqHIAf~vdD---I~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~  336 (434)
                      ...+.|.+...  ...        ...|. |++||||.|+|   +.++.++|+++    |+++.......|+        
T Consensus       195 ~~~l~l~~~~~--~~~--------~~~g~g~~~HiAf~v~d~~~l~~~~~~L~~~----G~~~~~~~~r~~~--------  252 (335)
T 3oaj_A          195 IGNVIDLKLTP--IGR--------GQMGAGTVHHIAWRANDDEDQLDWQRYIASH----GYGVTPVRDRNYF--------  252 (335)
T ss_dssp             SSCEEEEESSC--CCB--------CBCSBTEEEEEEEEESSHHHHHHHHHHHHHT----TCCCCCCEECSSS--------
T ss_pred             CcEEEEEeCCC--CCc--------CCCCCcceEEEEEEcCCHHHHHHHHHHHHHC----CCCccccccCCcE--------
Confidence            23444443321  011        11344 49999999999   56688999998    9875432211111        


Q ss_pred             CCCChhHHHHHHhcCeEEecCCCceEEEEEcc-ccC
Q 013898          337 DVLTDEQIKQCEELGVLVDRDDQGTLLQIFTK-PVG  371 (434)
Q Consensus       337 ~~l~~~~~~~l~~~~iL~D~d~~g~llqifT~-~~~  371 (434)
                                    .-+|-+|++|.++.++|. |-+
T Consensus       253 --------------~siYfrDP~G~~iEl~td~pgf  274 (335)
T 3oaj_A          253 --------------NAIYFREHGEILFEIATDPPGF  274 (335)
T ss_dssp             --------------EEEEEECTTSCEEEEEESCSCT
T ss_pred             --------------EEEEEECCCCcEEEEEeCCCCC
Confidence                          136889999999999998 543

>3lm4_A Catechol 2,3-dioxygenase; NYSGXRC, PSI-II, protein structure initiative, 2hydroxyl 6 OXO 6 phenyl hexa 2-4 dienoic acid, peroxide; HET: HPX; 1.80A {Rhodococcus jostii}

Probab=99.88  E-value=1.2e-20  Score=188.34  Aligned_cols=255  Identities=13%  Similarity=0.121  Sum_probs=169.2

Q ss_pred             CCCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEe-CC---EEEEEEcCCCCCCCcccccCCC
Q 013898           27 RFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRS-GD---LRFVFTAPYSPSISDAADAGNS  102 (434)
Q Consensus        27 ~~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~-G~---i~~vl~~p~~~~~~~~~~~~~~  102 (434)
                      ++.+++++||.|.|+|++++.+||+++|||+++.+.+        ....++. ++   ..+++..               
T Consensus         6 ~~~i~~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~--------~~~~l~~~~~~~~~~l~l~~---------------   62 (339)
T 3lm4_A            6 RFDIAHLARAELFSPKPQETLDFFTKFLGMYVTHREG--------QSVYLRGYEDPYPWSLKITE---------------   62 (339)
T ss_dssp             GGSEEEEEEEEEEESSHHHHHHHHHHTTCCEEEEEET--------TEEEEECTTCSSSCSEEEEE---------------
T ss_pred             CCCCcEEEEEEEEeCCHHHHHHHHHhcCCCEEEEecC--------CEEEEEecCCCCceEEEEee---------------
Confidence            4578999999999999999999999999999887632        1122332 11   2233321               


Q ss_pred             CCCCCCCChhHHhHHHHhcCCceeEEEEEecC---HHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEeecc
Q 013898          103 SASLPTFDHAACRSFAASHGLAARSIAVEVED---ADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSYK  179 (434)
Q Consensus       103 ~~~~~~~~~~~~~~~l~~hG~gv~~Iaf~V~D---vd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd~~  179 (434)
                                       ....++.++||+|+|   ++++++++.++|+++...|... +......++.+.|..+.|+...
T Consensus        63 -----------------~~~~g~~~~af~v~~~~dld~~~~~l~~~G~~~~~~~~~~-~~~~~~~f~DPdG~~iel~~~~  124 (339)
T 3lm4_A           63 -----------------APEAGMGHAAMRTSSPEALERRAKSLTDGNVDGTWSEDQF-GYGKTFEYQSPDGHNLQLLWEA  124 (339)
T ss_dssp             -----------------CSSCEEEEEEEEESSHHHHHHHHHHHHHTTCCEEEECCST-TBCCEEEEECTTCCEEEEECCB
T ss_pred             -----------------CCCCCcceEEEEeCCHHHHHHHHHHHHHCCCceeeccCCC-CceEEEEEECCCCCEEEEEEee
Confidence                             012478899999998   8999999999999876544322 2223445667777777777531


Q ss_pred             CcCCCCCCCCCCccCC---CCCCCCcccceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEE
Q 013898          180 DKANHLDFLPGFEPTD---EISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLA  256 (434)
Q Consensus       180 ~~~~~g~~~p~f~~~~---~~~~~~~~~~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~  256 (434)
                      .  ..+ ..|.+.+..   .......++.+.+|+||++.|+|++++++||+++|||+......  +.+    .....++.
T Consensus       125 ~--~~~-~~~~~~~~~~~~~~~~~~~g~~~~~l~Hv~l~v~D~~~a~~FY~~vLG~~~~~~~~--~~g----~~~~~~l~  195 (339)
T 3lm4_A          125 E--KYV-APPELRSKILTRPSKKPLQGIPVKRIDHLNLMSSDVTAVKDSFERHLGFRTTERVV--DGN----VEIGAWMS  195 (339)
T ss_dssp             C--CCC-CCGGGCCSSTTCSSCCCSBSSCCCEEEEEEEEESCHHHHHHHHHHHHCCEEEEEEE--ETT----EEEEEEEE
T ss_pred             e--EcC-CCccccccccCcccccCCCCCCcceeeeEEEEcCCHHHHHHHHHHhCCCeEEEEEe--cCC----cEEEEEEE
Confidence            1  111 011111110   00001234578999999999999999999999999999876653  111    12344555


Q ss_pred             cCCCceEEEecccCCCCCCCchHHHHHhhcCCCCceEEEEEeCC---HHHHHHHHHHhcCCCCceeccCCCchhhHhHhh
Q 013898          257 NNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSED---IFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKN  333 (434)
Q Consensus       257 ~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G~GvqHIAf~vdD---I~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~  333 (434)
                      .......+.+.+...              ....+++|+||.|+|   +.+++++|+++    |+++...| ..       
T Consensus       196 ~~~~~~~l~~~~~~~--------------~~~~~~~Hiaf~v~d~~~v~~~~~~l~~~----G~~i~~~p-~~-------  249 (339)
T 3lm4_A          196 SNLLGHEVACMRDMT--------------GGHGKLHHLAFFYGTGQHNIDAVEMFRDY----DIQIEAGP-DK-------  249 (339)
T ss_dssp             SSSSSCSEEEEECTT--------------SCCSEEEEEEEECCCHHHHHHHHHHHHHT----TCEEEEEE-EE-------
T ss_pred             eCCCceEEEEeccCC--------------CCCCceeEEEEEeCCHHHHHHHHHHHHHC----CCeEEeCC-cc-------
Confidence            544445566654311              124569999999999   88899999999    99987643 21       


Q ss_pred             hcCCCCChhHHHHHHhcCeEEecCCCceEEEEEcc
Q 013898          334 RAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFTK  368 (434)
Q Consensus       334 R~~~~l~~~~~~~l~~~~iL~D~d~~g~llqifT~  368 (434)
                       -+          .-..-.+|-+|++|.++++|+.
T Consensus       250 -~~----------~~~~~~~y~~DPdG~~iEl~~~  273 (339)
T 3lm4_A          250 -HG----------ITQSQFLYVFEPGGNRIELFGE  273 (339)
T ss_dssp             -ET----------GGGEEEEEEECTTSCEEEEECC
T ss_pred             -cc----------cCCceEEEEEcCCCCEEEEEEc
Confidence             11          1122347889999999999943

>1f1u_A Homoprotocatechuate 2,3-dioxygenase; extradiol, manganese, biodegradation, aromatic, oxidoreductase; 1.50A {Arthrobacter globiformis} SCOP: d.32.1.3 d.32.1.3 PDB: 1f1r_A 1f1v_A* 1f1x_A

Probab=99.87  E-value=2.1e-20  Score=184.96  Aligned_cols=250  Identities=16%  Similarity=0.159  Sum_probs=164.7

Q ss_pred             CCCCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEe-CC---EEEEEEcCCCCCCCcccccCC
Q 013898           26 DRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRS-GD---LRFVFTAPYSPSISDAADAGN  101 (434)
Q Consensus        26 ~~~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~-G~---i~~vl~~p~~~~~~~~~~~~~  101 (434)
                      +++.+.+++||.|.|+|++++++||+++|||+++.+.+        ....++. ++   ..+.+..              
T Consensus        11 ~~~~i~~l~hv~l~v~Dl~~a~~FY~~vlG~~~~~~~~--------~~~~l~~~~~~~~~~l~l~~--------------   68 (323)
T 1f1u_A           11 PAPDIVRCAYMEIVVTDLAKSREFYVDVLGLHVTEEDE--------NTIYLRSLEEFIHHNLVLRQ--------------   68 (323)
T ss_dssp             CCCCEEEEEEEEEEESCHHHHHHHHTTTTCCEEEEECS--------SEEEEECTTCCSSCSEEEEE--------------
T ss_pred             CCcccceeeEEEEEeCCHHHHHHHHHhCCCCEEeeecC--------CEEEEEecCCCCcEEEEEEE--------------
Confidence            56789999999999999999999999999999887632        1223443 21   2333322              


Q ss_pred             CCCCCCCCChhHHhHHHHhcCCceeEEEEEe---cCHHHHHHHHHHcCCCCCCCCcc-ccCceEEEEEEecCCeEEEEee
Q 013898          102 SSASLPTFDHAACRSFAASHGLAARSIAVEV---EDADVAFNTSVAHGAKPSSPPVI-LDNLAVIAEVQLYGDVVLRYVS  177 (434)
Q Consensus       102 ~~~~~~~~~~~~~~~~l~~hG~gv~~Iaf~V---~Dvd~a~~ra~~~Ga~~~~~p~~-~~~~~~~~~i~~~Gg~~~~fvd  177 (434)
                                        ....++.+++|+|   +|+++++++++++|+++...|.. ..+......++.+.|..+.|+.
T Consensus        69 ------------------~~~~~~~~~~f~v~~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~g~~~~~~DP~G~~iel~~  130 (323)
T 1f1u_A           69 ------------------GPIAAVAAFAYRVKSPAEVDAAEAYYKELGCRTERRKEGFTKGIGDSVRVEDPLGFPYEFFY  130 (323)
T ss_dssp             ------------------CSSCEEEEEEEEESSHHHHHHHHHHHHHTTCCEEEETTCSSTTBCSEEEEECTTSCEEEEEC
T ss_pred             ------------------CCCCCeeEEEEEeCCHHHHHHHHHHHHhCCCcEEeccccccCCcceEEEEECCCCCEEEEEE
Confidence                              1224778999999   78999999999999987655541 1111223445677777777776


Q ss_pred             ccCcCCCCCCCCCCccCCCCCCCCcccceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEc
Q 013898          178 YKDKANHLDFLPGFEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLAN  257 (434)
Q Consensus       178 ~~~~~~~g~~~p~f~~~~~~~~~~~~~~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~  257 (434)
                      ... ...  +.|.      ......+..+.+|+|+++.|+|++++++|| ++|||+.......++ +    .....++..
T Consensus       131 ~~~-~~~--~~~~------~~~~~~~~~~~~l~Hv~l~v~D~~~a~~FY-~~LGf~~~~~~~~~~-g----~~~~~f~~~  195 (323)
T 1f1u_A          131 ETE-HVE--RLTQ------RYDLYSAGELVRLDHFNQVTPDVPRGRAYL-EDLGFRVSEDIKDSD-G----VTYAAWMHR  195 (323)
T ss_dssp             CBC-CCC--CCTT------CGGGCCTTCCCEEEEEEEEESCHHHHHHHH-HHTTCEEEEEEECTT-C----CEEEEEEES
T ss_pred             ecc-ccc--cccc------ccccCCCCCCceeeeEEEecCCHHHHHHHH-HhCCCeEEEEEEcCC-C----cEEEEEEEc
Confidence            311 110  1111      000113456899999999999999999999 999999876543111 1    122333443


Q ss_pred             CCCceEEEecccCCCCCCCchHHHHHhhcCCCCceEEEEEeCCHHH---HHHHHHHhcCCCCc--eeccCCCchhhHhHh
Q 013898          258 NDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFR---TLREMRKRSGVGGF--EFMPSPPPTYYKNLK  332 (434)
Q Consensus       258 ~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G~GvqHIAf~vdDI~~---av~~L~~~~~~~Gv--~fl~~pP~~YY~~l~  332 (434)
                      ......+.+...                 .++|++|+||.|+|+++   ++++|+++    |+  ++...|+..      
T Consensus       196 ~~~~~~~~~~~~-----------------~~~~~~Hiaf~v~d~d~v~~~~~~l~~~----G~~~~i~~~p~~~------  248 (323)
T 1f1u_A          196 KQTVHDTALTGG-----------------NGPRMHHVAFATHEKHNIIQICDKMGAL----RISDRIERGPGRH------  248 (323)
T ss_dssp             SSSSCSEEEEES-----------------SBSEEEEEEEECSSHHHHHHHHHHHHHT----TCGGGEEEEEEEC------
T ss_pred             CCCcccEEEeCC-----------------CCCCceEEEEECCCHHHHHHHHHHHHHC----CCccccccCCCcc------
Confidence            322222333221                 23589999999999998   99999999    99  877533111      


Q ss_pred             hhcCCCCChhHHHHHHhcCeEEecCCCceEEEEEcccc
Q 013898          333 NRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFTKPV  370 (434)
Q Consensus       333 ~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llqifT~~~  370 (434)
                         .          .-..-.+|-+|++|..+.+++...
T Consensus       249 ---~----------~~~~~~~y~~DPdG~~iE~~~~~~  273 (323)
T 1f1u_A          249 ---G----------VSNAFYLYILDPDGHRIEIYTQDY  273 (323)
T ss_dssp             ---S----------TTCCEEEEEECTTCCEEEEEECCC
T ss_pred             ---C----------CCCcEEEEEECCCCCEEEEEeCCE
Confidence               1          001124688899999999998754

>3hpy_A Catechol 2,3-dioxygenase; repeated motifs, aromatic hydrocarbons catabolism, iron, oxidoreductase; 1.94A {Pseudomonas SP} PDB: 3hpv_A 3hq0_A*

Probab=99.87  E-value=4.7e-20  Score=180.85  Aligned_cols=259  Identities=14%  Similarity=0.105  Sum_probs=164.7

Q ss_pred             CCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEe-CC---EEEEEEcCCCCCCCcccccCCCC
Q 013898           28 FRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRS-GD---LRFVFTAPYSPSISDAADAGNSS  103 (434)
Q Consensus        28 ~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~-G~---i~~vl~~p~~~~~~~~~~~~~~~  103 (434)
                      +.+.+++||.|.|+|++++.+||+++|||+++.+.+  .+     ...++. ++   ..+.+...               
T Consensus         4 ~~i~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~--~~-----~~~l~~~~~~~~~~l~l~~~---------------   61 (309)
T 3hpy_A            4 TGVLRPGHAQVRVLNLEEGIHFYRNVLGLVETGRDD--QG-----RVYFKCWDERDHSCYIIREA---------------   61 (309)
T ss_dssp             CSEEEEEEEEEEESSHHHHHHHHHHTSCCEEEEECT--TS-----CEEEECTTCCBSCSEEEEEC---------------
T ss_pred             cccceeeEEEEEcCCHHHHHHHHHhccCCEEEEEcC--CC-----eEEEEeccCCCceEEEEEeC---------------
Confidence            357899999999999999999999999999987642  11     122332 22   23333220               


Q ss_pred             CCCCCCChhHHhHHHHhcCCceeEEEEEecC---HHHHHHHHHHcCCCCCCCCcc-ccCceEEEEEEecCCeEEEEeecc
Q 013898          104 ASLPTFDHAACRSFAASHGLAARSIAVEVED---ADVAFNTSVAHGAKPSSPPVI-LDNLAVIAEVQLYGDVVLRYVSYK  179 (434)
Q Consensus       104 ~~~~~~~~~~~~~~l~~hG~gv~~Iaf~V~D---vd~a~~ra~~~Ga~~~~~p~~-~~~~~~~~~i~~~Gg~~~~fvd~~  179 (434)
                                       ...++.|+||.|+|   +++++++++++|+++...|.. ..+......++.+.|..+.++...
T Consensus        62 -----------------~~~~~~h~a~~v~~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~f~DPdG~~iel~~~~  124 (309)
T 3hpy_A           62 -----------------DTAGIDFFGFKVLDKATLEKLDADLQAYGLTTTRIPAGEMLETGERVRFELPSGHLIELYAEK  124 (309)
T ss_dssp             -----------------SSCEEEEEEEEESCHHHHHHHHHHHHHHTCCCEEECTTSSTTBCCEEEEECTTSCEEEEESCB
T ss_pred             -----------------CCCceeEEEEEECCHHHHHHHHHHHHhCCCceeeccCCccCCCeeEEEEECCCCCEEEEEEcc
Confidence                             12377899999997   899999999999987654432 112233455677778788887642


Q ss_pred             CcCCCCCCCCCCccCCCCCCCCcccceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCC
Q 013898          180 DKANHLDFLPGFEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANND  259 (434)
Q Consensus       180 ~~~~~g~~~p~f~~~~~~~~~~~~~~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~  259 (434)
                      ..  .+...+...|.........+..+.+|+||++.|+|++++.+||+++|||+........+ .   .+....++....
T Consensus       125 ~~--~~~~~~~~~p~~~~~~~~~~~~~~~i~Hv~l~v~D~~~~~~FY~~~LG~~~~~~~~~~~-~---~~~~~~~~~~~~  198 (309)
T 3hpy_A          125 TC--VGNGISEVNPAPWNAQREHGIAPIQLDHCLLYGPNIAEVQKIFTEVLGFYLVERVLSPD-G---DSDMGIWLSCSH  198 (309)
T ss_dssp             CB--CCCSSCSBSCCSCCGGGGSSSCCSEEEEEEEEESCHHHHHHHHHHTSCCEEEEEEECSS-S---CSEEEEEEESSS
T ss_pred             ce--ecccccccCCCCCccccCCCcccceeeeEEEEeCCHHHHHHHHHHhcCCEEEEEEecCC-C---CceEEEEEecCC
Confidence            11  11000000110000000113568999999999999999999999999999876543211 0   012334444433


Q ss_pred             CceEEEecccCCCCCCCchHHHHHhhcCCCCceEEEEEeCCHHH---HHHHHHHhcCCCCceeccCCCchhhHhHhhhcC
Q 013898          260 EMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFR---TLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAG  336 (434)
Q Consensus       260 g~v~i~L~e~~~g~~~~s~i~~fl~~~~G~GvqHIAf~vdDI~~---av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~  336 (434)
                      ....+.+....                ...+++|+||.|+|+++   +.++|+++    |+++...| ...        +
T Consensus       199 ~~~~~~~~~~~----------------~~~~~~Hiaf~v~d~~~v~~~~~~l~~~----G~~~~~~p-~~~--------~  249 (309)
T 3hpy_A          199 KVHDIAFVEYP----------------EKGKLHHCSFLLESWEQVLRAGDIMSMN----EVNVDIGP-TRH--------G  249 (309)
T ss_dssp             SSCSEEEEECS----------------STTEEEEEEEECSSHHHHHHHHHHHHHT----TCCBSSCS-EEC--------S
T ss_pred             CceeEEEecCC----------------CCCceeEEEEECCCHHHHHHHHHHHHHC----CCEEEeCC-ccC--------C
Confidence            33333333221                23459999999998754   67889998    99988654 210        1


Q ss_pred             CCCChhHHHHHHhcCeEEecCCCceEEEEEcccc
Q 013898          337 DVLTDEQIKQCEELGVLVDRDDQGTLLQIFTKPV  370 (434)
Q Consensus       337 ~~l~~~~~~~l~~~~iL~D~d~~g~llqifT~~~  370 (434)
                        .        -....+|-+|++|.++++++...
T Consensus       250 --~--------~~~~~~y~~DPdG~~iE~~~~g~  273 (309)
T 3hpy_A          250 --V--------TRGCTIYAWDPSGNRFETFMGGY  273 (309)
T ss_dssp             --S--------SSEEEEEEECTTSCEEEEEEECC
T ss_pred             --C--------CccEEEEEECCCCCEEEEEeCCc
Confidence              0        01124688999999999999854

>3b59_A Glyoxalase/bleomycin resistance protein/dioxygena; 11004Z, NYSGXRC, PSI-2, structural genomics, Pro structure initiative; 2.53A {Novosphingobium aromaticivorans}

Probab=99.86  E-value=4e-20  Score=182.07  Aligned_cols=239  Identities=13%  Similarity=0.053  Sum_probs=163.2

Q ss_pred             CCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCC----EEEEEEcCCCCCCCcccccCCCC
Q 013898           28 FRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGD----LRFVFTAPYSPSISDAADAGNSS  103 (434)
Q Consensus        28 ~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~----i~~vl~~p~~~~~~~~~~~~~~~  103 (434)
                      +.+.+++||.|.|+|++++.+||+++|||+++...+        ....++.++    ..+.|...               
T Consensus         4 ~~i~~l~~v~l~v~Dl~~a~~FY~~vlG~~~~~~~~--------~~~~l~~~~~~~~~~l~l~~~---------------   60 (310)
T 3b59_A            4 SRVTEIRYVGYGVKDFDAEKAFYADVWGLEPVGEDA--------NNAWFKAQGADEHHVVQLRRA---------------   60 (310)
T ss_dssp             CCEEEEEEEEEEESSHHHHHHHHHHTTCCEEEEECS--------SEEEEECTTSCCSCSEEEEEC---------------
T ss_pred             eecceeeEEEEecCCHHHHHHHHHhCcCCEEeeecC--------CeEEEEECCCCCCEEEEEEEC---------------
Confidence            468999999999999999999999999999887632        123455544    55555431               


Q ss_pred             CCCCCCChhHHhHHHHhcCCceeEEEEEe---cCHHHHHHHHHHcCCCCCCCCcc--ccCceEEEEEEecCCeEEEEeec
Q 013898          104 ASLPTFDHAACRSFAASHGLAARSIAVEV---EDADVAFNTSVAHGAKPSSPPVI--LDNLAVIAEVQLYGDVVLRYVSY  178 (434)
Q Consensus       104 ~~~~~~~~~~~~~~l~~hG~gv~~Iaf~V---~Dvd~a~~ra~~~Ga~~~~~p~~--~~~~~~~~~i~~~Gg~~~~fvd~  178 (434)
                                       ...++.+++|.|   +|+++++++++++|+++...|..  .........++++.|..+.|+..
T Consensus        61 -----------------~~~~~~~~~~~v~~~~dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~  123 (310)
T 3b59_A           61 -----------------DENRIDVIALAADSRSDVDALRASVEAAGCKVASEPAVLATPGGGYGFRFFSPDGLLFEVSSD  123 (310)
T ss_dssp             -----------------SSCEEEEEEEEESSHHHHHHHHHHHHHHTCCBCCCSEECCSTTCCEEEEEECTTSCEEEEEEC
T ss_pred             -----------------CCCCeeEEEEEeCCHHHHHHHHHHHHhCCCeEeecCccccccCCceEEEEECCCCCEEEEEEc
Confidence                             234678999999   78999999999999998776653  11223344466777777777763


Q ss_pred             cCcCCCCCCCCCCccCCCCCCCCcccceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcC
Q 013898          179 KDKANHLDFLPGFEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANN  258 (434)
Q Consensus       179 ~~~~~~g~~~p~f~~~~~~~~~~~~~~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~  258 (434)
                      .. ...    ..+.       .+.+..+.+|+|+++.|+|++++++||+++|||++.....  +        ...++..+
T Consensus       124 ~~-~~~----~~~~-------~~~~~~~~~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~--~--------~~~fl~~~  181 (310)
T 3b59_A          124 VA-KGA----KRDL-------ARWEGVPVKISHIVLHSPNHQDMVKFFTDVLGFKVSDWLG--D--------FMCFLRCN  181 (310)
T ss_dssp             CC-CCC----CCCC-------CTTCCCCCEEEEEEEEETTHHHHHHHHHHTSCCEEEEEET--T--------TEEEEESS
T ss_pred             cc-ccC----CCcc-------CCCCCcCcEeceEEEecCCHHHHHHHHHhCCCCEEEEeeC--C--------eEEEEecC
Confidence            21 110    0111       1123467899999999999999999999999999875431  1        12233333


Q ss_pred             CCceEEEecccCCCCCCCchHHHHHhhcCCCCceEEEEEeCCHHHH---HHHHHHhcCCCCceeccCCCchhhHhHhhhc
Q 013898          259 DEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRT---LREMRKRSGVGGFEFMPSPPPTYYKNLKNRA  335 (434)
Q Consensus       259 ~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G~GvqHIAf~vdDI~~a---v~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~  335 (434)
                      .....+.+...                 . .|++|+||.|+|+++.   +++|+++    |+++...| ..        .
T Consensus       182 ~~~~~l~l~~~-----------------~-~g~~hi~f~v~d~d~~~~~~~~l~~~----G~~~~~~p-~~--------~  230 (310)
T 3b59_A          182 SAHHRIAILPG-----------------P-PCLNHVAYDMLSVDDMMRGAHRLKVK----GIDIGWGP-GR--------H  230 (310)
T ss_dssp             SBSCSEEEEES-----------------S-SEEEEEEEECSSHHHHHHHHHHHHHT----TCCCSEEE-EE--------C
T ss_pred             CCcceEEEECC-----------------C-CceEEEEEEcCCHHHHHHHHHHHHHc----CCceeecC-cc--------c
Confidence            22233333221                 2 6799999999997766   9999999    99887643 21        1


Q ss_pred             CCCCChhHHHHHHhcCeEEecCCCceEEEEEccc
Q 013898          336 GDVLTDEQIKQCEELGVLVDRDDQGTLLQIFTKP  369 (434)
Q Consensus       336 ~~~l~~~~~~~l~~~~iL~D~d~~g~llqifT~~  369 (434)
                      .          .-..-.+|-+|++|..+.+++..
T Consensus       231 ~----------~~~~~~~y~~DPdG~~iE~~~~~  254 (310)
T 3b59_A          231 T----------AGNNTFSYFVTPGGFVTEYTSEL  254 (310)
T ss_dssp             S----------TTCCEEEEEECTTSCEEEEEECC
T ss_pred             c----------CCCcEEEEEECCCCCEEEEEeCc
Confidence            1          00112468889999999998865

>1mpy_A Catechol 2,3-dioxygenase; extradiol dioxygenase, non heme iron dioxygenase, metapyrocatechase, oxidoreductase; 2.80A {Pseudomonas putida} SCOP: d.32.1.3 d.32.1.3

Probab=99.86  E-value=6e-20  Score=179.63  Aligned_cols=258  Identities=15%  Similarity=0.134  Sum_probs=164.1

Q ss_pred             CcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCC----EEEEEEcCCCCCCCcccccCCCCC
Q 013898           29 RVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGD----LRFVFTAPYSPSISDAADAGNSSA  104 (434)
Q Consensus        29 ~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~----i~~vl~~p~~~~~~~~~~~~~~~~  104 (434)
                      .+++++||.|.|+|++++++||+++|||+++.+..  .+     ...++.++    +.+.+..                 
T Consensus         4 ~i~~i~hv~l~v~Dl~~a~~FY~~~lG~~~~~~~~--~~-----~~~l~~~~~~~~~~l~~~~-----------------   59 (307)
T 1mpy_A            4 GVMRPGHVQLRVLDMSKALEHYVELLGLIEMDRDD--QG-----RVYLKAWTEVDKFSLVLRE-----------------   59 (307)
T ss_dssp             SEEEEEEEEEEESCHHHHHHHHHHTTCCEEEEECT--TS-----CEEEECTTCCBSCSEEEEE-----------------
T ss_pred             ccceeeeEEEEeCCHHHHHHHHHHccCCEEEeecC--CC-----cEEEEecCCCCceEEEEcc-----------------
Confidence            47899999999999999999999999999987642  11     12233321    2222211                 


Q ss_pred             CCCCCChhHHhHHHHhcCCceeEEEEEe---cCHHHHHHHHHHcCCCCCCCCc-cccCceEEEEEEecCCeEEEEeeccC
Q 013898          105 SLPTFDHAACRSFAASHGLAARSIAVEV---EDADVAFNTSVAHGAKPSSPPV-ILDNLAVIAEVQLYGDVVLRYVSYKD  180 (434)
Q Consensus       105 ~~~~~~~~~~~~~l~~hG~gv~~Iaf~V---~Dvd~a~~ra~~~Ga~~~~~p~-~~~~~~~~~~i~~~Gg~~~~fvd~~~  180 (434)
                                     ...+++.+++|.|   +|+++++++++++|+++...|. ...+......++.+.|..+.++++..
T Consensus        60 ---------------~~~~~~~~~~f~v~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~  124 (307)
T 1mpy_A           60 ---------------ADEPGMDFMGFKVVDEDALRQLERDLMAYGCAVEQLPAGELNSCGRRVRFQAPSGHHFELYADKE  124 (307)
T ss_dssp             ---------------CSSCEEEEEEEEESCHHHHHHHHHHHHHHTCCCEEECTTSSTTBCCEEEEECTTSCEEEEESCBC
T ss_pred             ---------------CCCCCcceEEEEeCCHHHHHHHHHHHHHcCCceecCCcccCCCceEEEEEECCCCCEEEEEEcch
Confidence                           0124778999999   8999999999999998766553 11122234556788888888887422


Q ss_pred             cCCCCCCC-CCCccCCCCCCCCcccceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCce-EEEEEcC
Q 013898          181 KANHLDFL-PGFEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLN-SVVLANN  258 (434)
Q Consensus       181 ~~~~g~~~-p~f~~~~~~~~~~~~~~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~-s~~l~~~  258 (434)
                      .  .+.|. +...+.. ......++.+.+|+||++.|+|++++++||+++|||+....... .     .+.. ..++...
T Consensus       125 ~--~~~~~~~~~~~~~-~~~~~~~~~~~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~-~-----~~~~~~~~l~~~  195 (307)
T 1mpy_A          125 Y--TGKWGLNDVNPEA-WPRDLKGMAAVRFDHALMYGDELPATYDLFTKVLGFYLAEQVLD-E-----NGTRVAQFLSLS  195 (307)
T ss_dssp             B--CCSTTCCSBSCCS-SCSCCCTTCCCEEEEEEEEESCHHHHHHHHHHTTCCEEEEEEEC-T-----TCCEEEEEEESS
T ss_pred             h--cccccccccCCcC-CcccCCCCCcCceeeEEEEcCCHHHHHHHHHHHcCCeeEeeeec-C-----CCcEEEEEEEcC
Confidence            1  11121 1111110 00011235688999999999999999999999999998765421 1     1111 1223322


Q ss_pred             CCceEEEecccCCCCCCCchHHHHHhhcCCCC-ceEEEEEeC---CHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhh
Q 013898          259 DEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAG-VQHLALVSE---DIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNR  334 (434)
Q Consensus       259 ~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G~G-vqHIAf~vd---DI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R  334 (434)
                      .....+.+...                 .+.| ++||||.|+   |+++++++|+++    |++++..| ..+-      
T Consensus       196 ~~~~~~~~~~~-----------------~~~g~~~hi~f~v~d~~dv~~~~~~l~~~----G~~~~~~p-~~~~------  247 (307)
T 1mpy_A          196 TKAHDVAFIHH-----------------PEKGRLHHVSFHLETWEDLLRAADLISMT----DTSIDIGP-TRHG------  247 (307)
T ss_dssp             SBSCSEEEEEC-----------------SSSSEEEEEEEECSCHHHHHHHHHHHHHH----TCCEEEEE-EECS------
T ss_pred             CCceeEEEecC-----------------CCCCcceEEEEEcCCHHHHHHHHHHHHHC----CCceeeCC-ccCC------
Confidence            11112222211                 2345 899999999   577788999999    99987543 2210      


Q ss_pred             cCCCCChhHHHHHHhcCeEEecCCCceEEEEEccccCCCC
Q 013898          335 AGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFTKPVGDRP  374 (434)
Q Consensus       335 ~~~~l~~~~~~~l~~~~iL~D~d~~g~llqifT~~~~~r~  374 (434)
                      .+            ....+|-+|++|+++++++.+....|
T Consensus       248 ~~------------~~~~~~~~DPdG~~iel~~~~~~~~~  275 (307)
T 1mpy_A          248 LT------------HGKTIYFFDPSGNRNEVFCGGDYNYP  275 (307)
T ss_dssp             ST------------TCEEEEEECTTSCEEEEEECCCBCCT
T ss_pred             CC------------CceEEEEECCCCcEEEEEecccccCC
Confidence            00            01145888999999999997654333

>2wl9_A Catechol 2,3-dioxygenase; aromatic hydrocarbons catabolism, iron, oxidoreductase; 1.90A {Rhodococcus SP} PDB: 2wl3_A

Probab=99.85  E-value=8.3e-20  Score=178.78  Aligned_cols=262  Identities=12%  Similarity=0.036  Sum_probs=166.9

Q ss_pred             CCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCC--EEEEEEcCCCCCCCcccccCCCCCC
Q 013898           28 FRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGD--LRFVFTAPYSPSISDAADAGNSSAS  105 (434)
Q Consensus        28 ~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~--i~~vl~~p~~~~~~~~~~~~~~~~~  105 (434)
                      +.+++++||.|.|+|++++++||++.|||+++....  .+     ...++.++  ..+.|...                 
T Consensus         2 m~i~~i~hv~l~v~Dl~~a~~FY~~~LG~~~~~~~~--~~-----~~~~~~~~~~~~l~l~~~-----------------   57 (305)
T 2wl9_A            2 AKVTELGYLGLSVSNLDAWRDYAAGIMGMQVVDDGE--DD-----RIYLRMDRWHHRIVLHAD-----------------   57 (305)
T ss_dssp             CCCCEEEEEEEECSCHHHHHHHHTTTTCCEEECCSC--TT-----EEEEECSSBSCSEEEECS-----------------
T ss_pred             CccceeeEEEEEeCCHHHHHHHHHhccCCEEeeccC--CC-----eEEEEeCCCeEEEEEEEC-----------------
Confidence            357899999999999999999999999999875211  11     22344554  45555421                 


Q ss_pred             CCCCChhHHhHHHHhcCCceeEEEEEec---CHHHHHHHHHHcCCCCCCCCccc---cCceEEEEEEecCCeEEEEeecc
Q 013898          106 LPTFDHAACRSFAASHGLAARSIAVEVE---DADVAFNTSVAHGAKPSSPPVIL---DNLAVIAEVQLYGDVVLRYVSYK  179 (434)
Q Consensus       106 ~~~~~~~~~~~~l~~hG~gv~~Iaf~V~---Dvd~a~~ra~~~Ga~~~~~p~~~---~~~~~~~~i~~~Gg~~~~fvd~~  179 (434)
                                     ...++.+++|.|+   |+++++++++++|+++...|...   .+......++.+.|..+.++..+
T Consensus        58 ---------------~~~~~~~~~f~v~~~~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~~~DPdG~~iel~~~~  122 (305)
T 2wl9_A           58 ---------------GSDDLAYIGWRVAGPVELDELAEQLKNAGIPFEVASDADAAERRVLGLVKLHDPGGNPTEIFYGP  122 (305)
T ss_dssp             ---------------SCCEEEEEEEECSSHHHHHHHHHHHHHTTCCCEECCHHHHHHTTEEEEEEEECTTCCEEEEEEEE
T ss_pred             ---------------CCCCeEEEEEEECCHHHHHHHHHHHHHCCCceEeCCcccccccCcEEEEEEECCCCCEEEEEECC
Confidence                           1246789999997   69999999999999977666431   23344556788888888888742


Q ss_pred             CcCCCCCCCCCCccCCCCCCCCcccceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCC
Q 013898          180 DKANHLDFLPGFEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANND  259 (434)
Q Consensus       180 ~~~~~g~~~p~f~~~~~~~~~~~~~~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~  259 (434)
                      .......|.++.. ...    +-...+.+|+||++.|+|++++++|| ++|||+...........+.  +....++..+.
T Consensus       123 ~~~~~~~~~~~~~-~~~----~~~~~~~~i~hv~l~v~D~~~s~~FY-~vLG~~~~~~~~~~~~~g~--~~~~~~~~~~~  194 (305)
T 2wl9_A          123 QVDTSSPFHPGRP-MFG----KFVTEGQGLGHIIIREDDVEEATRFY-RLLGLEGAVEYKFALPNGA--VGTPVFMHCND  194 (305)
T ss_dssp             CBCTTSCCCCSSC-CSS----CBCCTTTCSCEEEECCSCHHHHHHHH-HHHTCEEEECBCEECTTSC--EECCEEEESSS
T ss_pred             CccCCCCcCCCCC-ccc----ceecCCceeeeEEEECCCHHHHHHHH-HHcCCeeeeeEecccCCCc--cceEEEEEcCC
Confidence            1111112222210 000    00135679999999999999999999 9999998643211100000  01112333322


Q ss_pred             CceEEEecccCCCCCCCchHHHHHhhcCCCCceEEEEEeCC---HHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcC
Q 013898          260 EMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSED---IFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAG  336 (434)
Q Consensus       260 g~v~i~L~e~~~g~~~~s~i~~fl~~~~G~GvqHIAf~vdD---I~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~  336 (434)
                      ....+.+...                ....|++|+||.|+|   +.+++++|+++    |++++..| ...        +
T Consensus       195 ~~~~~~~~~~----------------~~~~~~~hiaf~v~d~~~v~~~~~~l~~~----G~~~~~~p-~~~--------~  245 (305)
T 2wl9_A          195 RHHSLAFGVG----------------PMDKRINHLMIEYTHLDDLGYAHDLVRQQ----KIDVTLQI-GKH--------S  245 (305)
T ss_dssp             SSCSEEECCS----------------CCSSSEEEEEEEESSHHHHHHHHHHHHHT----TCCEEEEE-EEC--------T
T ss_pred             CceEEEEecC----------------CCCCCceEEEEEcCCHHHHHHHHHHHHHc----CCCccccC-ccc--------C
Confidence            2222333321                123679999999999   56788899999    99988543 221        0


Q ss_pred             CCCChhHHHHHHhcCeEEecCCCceEEEEEcccc-CCCCC
Q 013898          337 DVLTDEQIKQCEELGVLVDRDDQGTLLQIFTKPV-GDRPT  375 (434)
Q Consensus       337 ~~l~~~~~~~l~~~~iL~D~d~~g~llqifT~~~-~~r~~  375 (434)
                                .-....+|-+|++|.++++++... .+.++
T Consensus       246 ----------~~~~~~~y~~DPdG~~iEl~~~~~~~d~~~  275 (305)
T 2wl9_A          246 ----------NDEALTFYCANPSGWLWEPGWGSRPAPAQQ  275 (305)
T ss_dssp             ----------TTCCEEEEEECTTSSEEEEEECCCCCCSSC
T ss_pred             ----------CCCcEEEEEECCCCCEEEEEeCCEEeCCcc
Confidence                      001124688999999999999764 24444

>1kw3_B 2,3-dihydroxybiphenyl dioxygenase; four TIME repetitions of the beta-alpha-beta-BETA-beta motif oxidoreductase; 1.45A {Pseudomonas SP} SCOP: d.32.1.3 d.32.1.3 PDB: 1dhy_A 1eiq_A 1eir_A* 1eil_A 1kw6_B* 1kw8_B* 1kw9_B* 1kwb_B 1kwc_B*

Probab=99.85  E-value=3.1e-19  Score=173.26  Aligned_cols=250  Identities=13%  Similarity=0.081  Sum_probs=160.4

Q ss_pred             cceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCE--EEEEEcCCCCCCCcccccCCCCCCCC
Q 013898           30 VNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDL--RFVFTAPYSPSISDAADAGNSSASLP  107 (434)
Q Consensus        30 i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i--~~vl~~p~~~~~~~~~~~~~~~~~~~  107 (434)
                      +++++||.|.|+|++++++||++.|||+++.+.+  .      ...++.++.  .+.+..                    
T Consensus         2 i~~i~hv~l~v~Dl~~a~~FY~~~lG~~~~~~~~--~------~~~l~~~~~~~~l~~~~--------------------   53 (292)
T 1kw3_B            2 IERLGYLGFAVKDVPAWDHFLTKSVGLMAAGSAG--D------AALYRADQRAWRIAVQP--------------------   53 (292)
T ss_dssp             CCEEEEEEEEESCHHHHHHHHHHTTCCEEEEEET--T------EEEEESSSBSCSEEEEE--------------------
T ss_pred             ceeEEEEEEEeCCHHHHHHHHHhcCCCEEeecCC--C------eEEEEcCCceEEEEEcc--------------------
Confidence            6899999999999999999999999999887642  1      122344442  222211                    


Q ss_pred             CCChhHHhHHHHhcCCceeEEEEEec---CHHHHHHHHHHcCCCCCCCCccc---cCceEEEEEEecCCeEEEEeeccCc
Q 013898          108 TFDHAACRSFAASHGLAARSIAVEVE---DADVAFNTSVAHGAKPSSPPVIL---DNLAVIAEVQLYGDVVLRYVSYKDK  181 (434)
Q Consensus       108 ~~~~~~~~~~l~~hG~gv~~Iaf~V~---Dvd~a~~ra~~~Ga~~~~~p~~~---~~~~~~~~i~~~Gg~~~~fvd~~~~  181 (434)
                                  ....++.++||.|+   |+++++++++++|+++...|...   .+......++.+.|..+.++..+..
T Consensus        54 ------------~~~~~~~~~~f~v~~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~~  121 (292)
T 1kw3_B           54 ------------GELDDLAYAGLEVDDAAALERMADKLRQAGVAFTRGDEALMQQRKVMGLLCLQDPFGLPLEIYYGPAE  121 (292)
T ss_dssp             ------------CTTCEEEEEEEECSSHHHHHHHHHHHHHHTCCCEECCHHHHHHHTCSEEEEEECTTSCEEEEEECCCB
T ss_pred             ------------CCCCCccEEEEEECCHHHHHHHHHHHHHcCCeEeecCcccccccCceEEEEEECCCCCEEEEEECccc
Confidence                        01236789999998   89999999999999876666421   1233455577888888888874221


Q ss_pred             CCCCCCCCCCccCCCCCCCCcccceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccC--ceEEEEEcCC
Q 013898          182 ANHLDFLPGFEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESG--LNSVVLANND  259 (434)
Q Consensus       182 ~~~g~~~p~f~~~~~~~~~~~~~~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g--~~s~~l~~~~  259 (434)
                      .....+.+    ....  ......+.+|+|+++.|+|++++++||+++|||+.........    ..|  ....++....
T Consensus       122 ~~~~~~~~----~~~~--~~~~~~~~~l~hv~l~v~D~~~a~~FY~~~lG~~~~~~~~~~~----~~g~~~~~~~~~~~~  191 (292)
T 1kw3_B          122 IFHEPFLP----SAPV--SGFVTGDQGIGHFVRCVPDTAKAMAFYTEVLGFVLSDIIDIQM----GPETSVPAHFLHCNG  191 (292)
T ss_dssp             CTTSCCCC----SSSC--CCBCCGGGCSCEEEEECSCHHHHHHHHHHTTCCEEEEEEEEEE----ETTEEEEEEEEESSS
T ss_pred             cccCCCCC----CCCc--cccccCCcccceEEEecCCHHHHHHHHHhccCCEEeeeeeccc----CCCccceEEEEEECC
Confidence            10111111    0000  0011457899999999999999999999999999875432110    001  1122333322


Q ss_pred             CceEEEecccCCCCCCCchHHHHHhhcCCCCceEEEEEeCCHHH---HHHHHHHhcCCCCceeccCCCchhhHhHhhhcC
Q 013898          260 EMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFR---TLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAG  336 (434)
Q Consensus       260 g~v~i~L~e~~~g~~~~s~i~~fl~~~~G~GvqHIAf~vdDI~~---av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~  336 (434)
                      ....+.+.+.                ....|++|+||.|+|+++   ++++|+ +    |++++..| ....      .+
T Consensus       192 ~~~~~~~~~~----------------~~~~~~~hiaf~v~d~~~v~~~~~~l~-~----G~~~~~~p-~~~~------~~  243 (292)
T 1kw3_B          192 RHHTIALAAF----------------PIPKRIHHFMLQANTIDDVGYAFDRLD-A----AGRITSLL-GRHT------ND  243 (292)
T ss_dssp             BSCSEEEECC----------------SCSSSEEEEEEEBSSHHHHHHHHHHHH-H----TTCBCBCS-EEES------SS
T ss_pred             CcceEEEecC----------------CCCCceEEEEEEcCCHHHHHHHHHHHh-C----CCceeecC-cccC------CC
Confidence            2222333321                013679999999998754   677898 8    99887643 3210      01


Q ss_pred             CCCChhHHHHHHhcCeEEecCCCce-EEEEEccc
Q 013898          337 DVLTDEQIKQCEELGVLVDRDDQGT-LLQIFTKP  369 (434)
Q Consensus       337 ~~l~~~~~~~l~~~~iL~D~d~~g~-llqifT~~  369 (434)
                                  ..-.+|-+|++|. ++.+++..
T Consensus       244 ------------~~~~~y~~DPdG~~~iEl~~~~  265 (292)
T 1kw3_B          244 ------------QTLSFYADTPSPMIEVEFGWGP  265 (292)
T ss_dssp             ------------CCEEEEEECSSTTCEEEEEECC
T ss_pred             ------------CeEEEEEECCCCCeeEEEEECC
Confidence                        1124688999999 99999976

>1lgt_A Biphenyl-2,3-DIOL 1,2-dioxygenase; extradiol dioxygenase, 2,3-dihydroxybiphenyl, non-heme iron, anaerobic, PCB biodegradation; HET: BP3; 1.70A {Burkholderia xenovorans} SCOP: d.32.1.3 d.32.1.3 PDB: 1kmy_A* 1knd_A 1knf_A 1han_A* 1lkd_A*

Probab=99.84  E-value=4.2e-19  Score=172.78  Aligned_cols=251  Identities=12%  Similarity=0.055  Sum_probs=162.6

Q ss_pred             cceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCE--EEEEEcCCCCCCCcccccCCCCCCCC
Q 013898           30 VNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDL--RFVFTAPYSPSISDAADAGNSSASLP  107 (434)
Q Consensus        30 i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i--~~vl~~p~~~~~~~~~~~~~~~~~~~  107 (434)
                      +++|+||.|.|+|++++++||++.|||+++.+.+  .      ...++.++.  .+.+..                    
T Consensus         2 i~~i~hv~l~v~Dl~~s~~FY~~~LG~~~~~~~~--~------~~~~~~~~~~~~l~~~~--------------------   53 (297)
T 1lgt_A            2 IRSLGYMGFAVSDVAAWRSFLTQKLGLMEAGTTD--N------GDLFRIDSRAWRIAVQQ--------------------   53 (297)
T ss_dssp             EEEEEEEEEEESCHHHHHHHHHHTTCCEEEEEET--T------EEEEESSSBSCSEEEEE--------------------
T ss_pred             ceEEEEEEEEcCCHHHHHHHHHHccCCEEeecCC--C------eEEEEeCCCcEEEEEec--------------------
Confidence            6899999999999999999999999999987642  1      233454442  233321                    


Q ss_pred             CCChhHHhHHHHhcCCceeEEEEEec---CHHHHHHHHHHcCCCCCCCCccc---cCceEEEEEEecCCeEEEEeeccCc
Q 013898          108 TFDHAACRSFAASHGLAARSIAVEVE---DADVAFNTSVAHGAKPSSPPVIL---DNLAVIAEVQLYGDVVLRYVSYKDK  181 (434)
Q Consensus       108 ~~~~~~~~~~l~~hG~gv~~Iaf~V~---Dvd~a~~ra~~~Ga~~~~~p~~~---~~~~~~~~i~~~Gg~~~~fvd~~~~  181 (434)
                                  ....++.+++|.|+   |+++++++++++|+++...|...   .+......++.++|..+.|++.+..
T Consensus        54 ------------~~~~~~~~~~f~v~~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~~  121 (297)
T 1lgt_A           54 ------------GEVDDLAFAGYEVADAAGLAQMADKLKQAGIAVTTGDASLARRRGVTGLITFADPFGLPLEIYYGASE  121 (297)
T ss_dssp             ------------CTTCEEEEEEEEESSHHHHHHHHHHHHHTTCCCEECCHHHHHHHTCSEEEEEECTTSCEEEEEECCCB
T ss_pred             ------------CCCCCccEEEEEeCCHHHHHHHHHHHHHCCCeEEeCCccccccCCceeEEEEECCCCCEEEEEECccc
Confidence                        01247789999999   89999999999999876555421   1233456677888888888875221


Q ss_pred             CCCCCCCCCCccCCCCCCCCcccceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeeccc-CcccccCceEEEEEcCCC
Q 013898          182 ANHLDFLPGFEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAED-VGTSESGLNSVVLANNDE  260 (434)
Q Consensus       182 ~~~g~~~p~f~~~~~~~~~~~~~~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d-~~~~~~g~~s~~l~~~~g  260 (434)
                      .....+    ......  ..-...+.+|+|+++.|+|++++++||+++|||+......... ++.   +....++.....
T Consensus       122 ~~~~~~----~~~~~~--~~~~~~~~~l~hv~l~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~---~~~~~~~~~~~~  192 (297)
T 1lgt_A          122 VFEKPF----LPGAAV--SGFLTGEQGLGHFVRCVPDSDKALAFYTDVLGFQLSDVIDMKMGPDV---TVPAYFLHCNER  192 (297)
T ss_dssp             CTTSCC----CCSSSC--SCBCCGGGCSCEEEEECSCHHHHHHHHHHTTCCEEEEEEEEEEETTE---EEEEEEEESSSB
T ss_pred             cccCCc----cCCCcc--cccccCccccceEEEecCCHHHHHHHHHHhcCCeeeeEEeccCCCCc---cceEEEEEeCCC
Confidence            100111    100000  0001357899999999999999999999999999875432110 000   012233333322


Q ss_pred             ceEEEecccCCCCCCCchHHHHHhhcCCCCceEEEEEeCCHHHHH---HHHHHhcCCCCceeccCCCchhhHhHhhhcCC
Q 013898          261 MVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTL---REMRKRSGVGGFEFMPSPPPTYYKNLKNRAGD  337 (434)
Q Consensus       261 ~v~i~L~e~~~g~~~~s~i~~fl~~~~G~GvqHIAf~vdDI~~av---~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~  337 (434)
                      ...+.+....                ...|++|+||.|+|++++.   ++ +++    |++++..| ...        +.
T Consensus       193 ~~~l~l~~~~----------------~~~~~~hiaf~v~d~~~~~~~~~~-~~~----G~~~~~~p-~~~--------~~  242 (297)
T 1lgt_A          193 HHTLAIAAFP----------------LPKRIHHFMLEVASLDDVGFAFDR-VDA----DGLITSTL-GRH--------TN  242 (297)
T ss_dssp             SCSEEEECCC----------------CSSSEEEEEEEBSCHHHHHHHHHH-HHT----TTCEEEEE-EEE--------SS
T ss_pred             cceEEEEcCC----------------CCCCceEEEEeCCCHHHHHHHHHH-HhC----CCcccccC-ccc--------CC
Confidence            3334444320                2367999999999987776   77 888    99988643 221        10


Q ss_pred             CCChhHHHHHHhcCeEEecCCCceEEEEEccc
Q 013898          338 VLTDEQIKQCEELGVLVDRDDQGTLLQIFTKP  369 (434)
Q Consensus       338 ~l~~~~~~~l~~~~iL~D~d~~g~llqifT~~  369 (434)
                                -..-.+|-+|++|+++.+++..
T Consensus       243 ----------g~~~~~~~~DPdG~~iel~~~~  264 (297)
T 1lgt_A          243 ----------DHMVSFYASTPSGVEVEYGWSA  264 (297)
T ss_dssp             ----------SCCEEEEEECTTSCEEEEEECC
T ss_pred             ----------CCcEEEEEECCCCcEEEEecCC
Confidence                      0111368899999999999875

>2zyq_A Probable biphenyl-2,3-DIOL 1,2-dioxygenase BPHC; extradiol, DHSA, TB, catechol, cholesterol, steroid, aromatic hydrocarbons catabolism; HET: TAR; 2.00A {Mycobacterium tuberculosis} PDB: 2zi8_A*

Probab=99.84  E-value=2.7e-19  Score=174.36  Aligned_cols=256  Identities=14%  Similarity=0.056  Sum_probs=161.8

Q ss_pred             CCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEE-EecCCCCceeEEEEEEEeCC--EEEEEEcCCCCCCCcccccCCCCC
Q 013898           28 FRVNRFHHVEFWCTDATNTARRFSWGLGMPIVA-KSDLSTGNTVHASYLLRSGD--LRFVFTAPYSPSISDAADAGNSSA  104 (434)
Q Consensus        28 ~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~-~~~~~~g~~~~~~~~l~~G~--i~~vl~~p~~~~~~~~~~~~~~~~  104 (434)
                      |.+++++||.|.|+|++++++||++.|||+++. +.+   +     ...++.++  ..+.+..                 
T Consensus         1 M~i~~i~hv~l~v~Dl~~a~~FY~~~lG~~~~~~~~~---~-----~~~~~~~~~~~~l~l~~-----------------   55 (300)
T 2zyq_A            1 MSIRSLGYLRIEATDMAAWREYGLKVLGMVEGKGAPE---G-----ALYLRMDDFPARLVVVP-----------------   55 (300)
T ss_dssp             -CCCEEEEEEEEESCHHHHHHHHHHTSCCEECSSCCS---S-----CEEEESSSSSCSEEEEE-----------------
T ss_pred             CCcceEEEEEEEeCCHHHHHHHHHHccCCEEeccCCC---C-----eEEEEeCCCcEEEEEec-----------------
Confidence            357899999999999999999999999999875 321   1     12334333  2333322                 


Q ss_pred             CCCCCChhHHhHHHHhcCCceeEEEEEecC---HHHHHHHHHHcCCCCCCCCccc---cCceEEEEEEecCCeEEEEeec
Q 013898          105 SLPTFDHAACRSFAASHGLAARSIAVEVED---ADVAFNTSVAHGAKPSSPPVIL---DNLAVIAEVQLYGDVVLRYVSY  178 (434)
Q Consensus       105 ~~~~~~~~~~~~~l~~hG~gv~~Iaf~V~D---vd~a~~ra~~~Ga~~~~~p~~~---~~~~~~~~i~~~Gg~~~~fvd~  178 (434)
                                     ....++.+++|.|+|   +++++++++++|+++...|...   ........++.+.|..+.++..
T Consensus        56 ---------------~~~~~~~~~~~~v~~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~  120 (300)
T 2zyq_A           56 ---------------GEHDRLLEAGWECANAEGLQEIRNRLDLEGTPYKEATAAELADRRVDEMIRFADPSGNCLEVFHG  120 (300)
T ss_dssp             ---------------CSSCEEEEEEEECSSHHHHHHHHHHHHHHTCCCEECCHHHHHHHTCSEEEEEECTTCCEEEEEEC
T ss_pred             ---------------CCCCCcceEEEEeCCHHHHHHHHHHHHHcCCeEEeCChhhcccccceEEEEEECCCCCEEEEEEc
Confidence                           012477899999975   8999999999999876555421   1223345567777878888774


Q ss_pred             cCcCCCCCCCCCCccCCCCCCCCcccceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeeccc--CcccccC--ceEEE
Q 013898          179 KDKANHLDFLPGFEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAED--VGTSESG--LNSVV  254 (434)
Q Consensus       179 ~~~~~~g~~~p~f~~~~~~~~~~~~~~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d--~~~~~~g--~~s~~  254 (434)
                      +.......|.+.   .     ..-...+.+|+|+++.|+|++++++||+++|||+.........  .+....|  ....+
T Consensus       121 ~~~~~~~~~~~~---~-----~~~~~~~~~l~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~g~~~~g~~~~~~~  192 (300)
T 2zyq_A          121 TALEHRRVVSPY---G-----HRFVTGEQGMGHVVLSTRDDAEALHFYRDVLGFRLRDSMRLPPQMVGRPADGPPAWLRF  192 (300)
T ss_dssp             CCCCCSCCCCTT---C-----CCBCCGGGCSCEEEEECSCHHHHHHHHHTTTCCEEEEEEEECGGGGTCCTTSCCEEEEE
T ss_pred             CCcCCCCCccCC---C-----cccccCCCccCeEEEEeCCHHHHHHHHHHhcCCEEeeeecccccccccCCCCCceEEEE
Confidence            111101111111   0     0000346889999999999999999999999999865432111  0000011  12233


Q ss_pred             EEcCCCceEEEecccCCCCCCCchHHHHHhhcCCCCceEEEEEeCCHHH---HHHHHHHhcCCCCceeccCCCchhhHhH
Q 013898          255 LANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFR---TLREMRKRSGVGGFEFMPSPPPTYYKNL  331 (434)
Q Consensus       255 l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G~GvqHIAf~vdDI~~---av~~L~~~~~~~Gv~fl~~pP~~YY~~l  331 (434)
                      +..+.....+.+.+..                ...|++|+||.|+|+++   ++++|+++    |++++..| ...    
T Consensus       193 ~~~~~~~~~~~~~~~~----------------~~~g~~h~af~v~d~~~v~~~~~~l~~~----G~~~~~~p-~~~----  247 (300)
T 2zyq_A          193 FGCNPRHHSLAFLPMP----------------TSSGIVHLMVEVEQADDVGLCLDRALRR----KVPMSATL-GRH----  247 (300)
T ss_dssp             EESSSBSCSEEEESSC----------------CSSSEEEEEEEBSSHHHHHHHHHHHHHT----TCCEEEEE-EEE----
T ss_pred             EEECCCccEEEEecCC----------------CCCCceEEEEEeCCHHHHHHHHHHHHHC----CCceeecc-ccc----
Confidence            3333222334443321                24679999999999654   69999999    99988643 221    


Q ss_pred             hhhcCCCCChhHHHHHHhcCeEEecCCCceEEEEEcccc
Q 013898          332 KNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFTKPV  370 (434)
Q Consensus       332 ~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llqifT~~~  370 (434)
                          +          ......+|-+|++|+++.+++...
T Consensus       248 ----~----------~~~~~~~~~~DPdG~~iEl~~~~~  272 (300)
T 2zyq_A          248 ----V----------NDLMLSFYMKTPGGFDIEFGCEGR  272 (300)
T ss_dssp             ----S----------SSCCEEEEEECTTSSEEEEEECCC
T ss_pred             ----C----------CCCeEEEEEECCCCCEEEEEeCCe
Confidence                1          001224688999999999998763

>1zsw_A Metallo protein, glyoxalase family protein; hypothetical protein from glyoxalase family, structural GENO PSI, protein structure initiative; 1.65A {Bacillus cereus} SCOP: d.32.1.10 d.32.1.10

Probab=99.84  E-value=1.6e-18  Score=172.50  Aligned_cols=271  Identities=13%  Similarity=0.099  Sum_probs=168.7

Q ss_pred             eeccccccCCCCCCCCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeC----CEEEEEEcCC
Q 013898           14 GFKNFVRQNPKSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSG----DLRFVFTAPY   89 (434)
Q Consensus        14 ~~~~~~~~~~~~~~~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G----~i~~vl~~p~   89 (434)
                      .--.|.+.||+.   .+.+++||.|.|+|++++++||+++|||+++.+...... .......+..+    +..+.+....
T Consensus        15 ~~~~~~~~~~m~---~i~~i~hv~l~v~Dl~~a~~FY~~~LG~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~l~l~~~~   90 (338)
T 1zsw_A           15 TENLYFQSNAMY---EIKGHHHISMVTKNANENNHFYKNVLGLRRVKMTVNQDD-PSMYHLFYGDKTGSPGTELSFFEIP   90 (338)
T ss_dssp             STTCCCSSCCSS---CCCSEEEEEEEESCHHHHHHHHHTTTCCEEEEEEEETTE-EEEEEEEEESTTCCTTSEEEEEECT
T ss_pred             ccccCCCcCccC---cCccccEEEEEcCCHHHHHHHHHHhcCCEEEEeecccCC-CceEEEEEcCCCCCCCCEEEEEECC
Confidence            334566666642   588999999999999999999999999998865310000 01112223333    3555554321


Q ss_pred             CCCCCcccccCCCCCCCCCCChhHHhHHHHhcCCceeEEEEEec---CHHHHHHHHHHcCCCCCCCCccccCceEEEEEE
Q 013898           90 SPSISDAADAGNSSASLPTFDHAACRSFAASHGLAARSIAVEVE---DADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQ  166 (434)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~hG~gv~~Iaf~V~---Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~  166 (434)
                      ...                  ..      .....++.++||.|+   |+++++++++++|+++...+. ..+ .....++
T Consensus        91 ~~~------------------~~------~~~~~~~~hiaf~v~~~~dld~~~~~l~~~G~~~~~~~~-~~G-~~~~~f~  144 (338)
T 1zsw_A           91 LVG------------------RT------YRGTNAITRIGLLVPSEDSLHYWKERFEKFDVKHSEMTT-YAN-RPALQFE  144 (338)
T ss_dssp             TCC------------------BC------BCCBSEEEEEEEEESCHHHHHHHHHHHHHTTCEECCSEE-ETT-EEEEEEE
T ss_pred             CCc------------------cC------cCCCCCeeeEEEEcCCHHHHHHHHHHHHHCCCccccccc-cCC-cEEEEEE
Confidence            100                  00      011247889999998   689999999999998765443 222 3455677


Q ss_pred             ecCCeEEEEeeccCcCCCCCC-CCCCccCCCCCCCCcccceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcc
Q 013898          167 LYGDVVLRYVSYKDKANHLDF-LPGFEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGT  245 (434)
Q Consensus       167 ~~Gg~~~~fvd~~~~~~~g~~-~p~f~~~~~~~~~~~~~~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~  245 (434)
                      +++|..+.|++...  ..+.. .| +.+   .. .+..+.+.+|+|+++.|+|++++++||+++|||+......      
T Consensus       145 DPdG~~iel~~~~~--~~~~~~~p-~~~---~~-~~~~~~~~~l~hv~l~v~Dl~~a~~FY~~~LG~~~~~~~~------  211 (338)
T 1zsw_A          145 DAEGLRLVLLVSNG--EKVEHWET-WEK---SE-VPAKHQIQGMGSVELTVRRLDKMASTLTEIFGYTEVSRND------  211 (338)
T ss_dssp             CTTCCEEEEEECTT--CCCTTCCC-CTT---CS-SCGGGSCCEEEEEEEEESCHHHHHHHHHHTTCCEEEEECS------
T ss_pred             CCCCCEEEEEEcCC--ccccccCc-CcC---CC-CCccccCceEEEEEEEECCHHHHHHHHHHhcCCEEEeecC------
Confidence            88888888887521  11110 11 110   00 1234578999999999999999999999999999876431      


Q ss_pred             cccCceEEEEEcC-CCc--eEEEecccCCCCCCCchHHHHHhhcCCCCceEEEEEeC---CHHHHHHHHHHhcCCCCcee
Q 013898          246 SESGLNSVVLANN-DEM--VLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSE---DIFRTLREMRKRSGVGGFEF  319 (434)
Q Consensus       246 ~~~g~~s~~l~~~-~g~--v~i~L~e~~~g~~~~s~i~~fl~~~~G~GvqHIAf~vd---DI~~av~~L~~~~~~~Gv~f  319 (434)
                         +.  ..+..+ .+.  ..+.+....    ..       ...+..+++|+||.|+   ||++++++|+++    |+++
T Consensus       212 ---~~--~~~~~~~~g~~~~~~~~~~~~----~~-------~~~~~~~~~hiaf~v~~~~dv~~~~~~l~~~----G~~~  271 (338)
T 1zsw_A          212 ---QE--AIFQSIKGEAFGEIVVKYLDG----PT-------EKPGRGSIHHLAIRVKNDAELAYWEEQVKQR----GFHS  271 (338)
T ss_dssp             ---SE--EEEESSTTCSTTCEEEEECCS----SB-------CBCCBTCEEEEEEEESSHHHHHHHHHHHHHT----TCCC
T ss_pred             ---Ce--EEEEecCCCCceEEEEeccCC----CC-------CCCCCCceEEEEEEeCCHHHHHHHHHHHHHC----CCce
Confidence               11  122221 121  222222111    01       0112245999999999   799999999999    9987


Q ss_pred             ccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEEEEccc
Q 013898          320 MPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFTKP  369 (434)
Q Consensus       320 l~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llqifT~~  369 (434)
                      . . |...        .            ....+|-+|++|+++++++..
T Consensus       272 ~-~-~~~~--------~------------~~~~~~~~DPdG~~iEl~~~~  299 (338)
T 1zsw_A          272 S-G-IIDR--------F------------YFKSLYFRESNGILFEIATDG  299 (338)
T ss_dssp             C-C-CEEC--------S------------SEEEEEEECTTCCEEEEEEEE
T ss_pred             e-e-eeec--------C------------ceEEEEEECCCCCEEEEEEcC
Confidence            4 2 3221        0            112467788889888877653

>4ghg_A Homoprotocatechuate 2,3-dioxygenase; oxygen activation, Fe(II), 2-His-1-carboxylate triad, 4-nitrocatechol, OXY complex, oxidoreductase; HET: P6G PG4 DHY; 1.50A {Brevibacterium fuscum} PDB: 1q0o_A 1q0c_A 2iga_A* 2ig9_A 3ojj_A* 3bza_A* 3ojk_A* 3ojt_A* 3ojn_A* 4ghh_A* 4ghc_A 4ghd_A* 4ghe_A* 4ghf_A* 3eck_A* 3ecj_A*

Probab=99.82  E-value=1.9e-18  Score=174.45  Aligned_cols=253  Identities=15%  Similarity=0.142  Sum_probs=154.3

Q ss_pred             CCCCCCCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCC----EEEEEEcCCCCCCCcccc
Q 013898           23 PKSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGD----LRFVFTAPYSPSISDAAD   98 (434)
Q Consensus        23 ~~~~~~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~----i~~vl~~p~~~~~~~~~~   98 (434)
                      |..+++.|++|.||+|.|+|++++.+||+++|||+++.+.+        ....++.++    ..+++..           
T Consensus         8 P~~P~p~I~rl~hV~l~V~DLe~s~~FY~dvLGL~~~~~~~--------~~~~lr~~~~~~~~~l~l~~-----------   68 (365)
T 4ghg_A            8 PVAPAPDILRCAYAELVVTDLAKSRNFYVDVLGLHVSYEDE--------NQIYLRSFEEFIHHNLVLTK-----------   68 (365)
T ss_dssp             CSSCCCCEEEEEEEEEEESCHHHHHHHHTTTTCCEEEEECS--------SEEEEECTTCCSSCSEEEEE-----------
T ss_pred             CCCCCCCCCEEEEEEEEeCCHHHHHHHHhhCCCCEEEEEcC--------CEEEEEeCCCCcceEEEecc-----------
Confidence            33456779999999999999999999999999999988743        123344322    1122221           


Q ss_pred             cCCCCCCCCCCChhHHhHHHHhcCCceeEEEEEecC---HHHHHHHHHHcCCCCCCCCccc-cCceEEEEEEecCCeEEE
Q 013898           99 AGNSSASLPTFDHAACRSFAASHGLAARSIAVEVED---ADVAFNTSVAHGAKPSSPPVIL-DNLAVIAEVQLYGDVVLR  174 (434)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~l~~hG~gv~~Iaf~V~D---vd~a~~ra~~~Ga~~~~~p~~~-~~~~~~~~i~~~Gg~~~~  174 (434)
                                           ....++.++||.|.+   ++++.+++.++|+.+...+... .+......++.+.|..++
T Consensus        69 ---------------------~~~~gl~~~a~~v~s~~dLd~~~~~L~~~Gv~v~~~~~~~~~~~g~~~~f~DPdG~~iE  127 (365)
T 4ghg_A           69 ---------------------GPVAALKAMAFRVRTPEDVDKAEAYYQELGCRTERRKDGFVKGIGDALRVEDPLGFPYE  127 (365)
T ss_dssp             ---------------------CSSCEEEEEEEEESSHHHHHHHHHHHHHTTCCEEEETTCSSTTBCSEEEEECTTSCEEE
T ss_pred             ---------------------CCCCCcceEEEEeCCHHHHHHHHHHHHHcCCcceeccccccCCCceEEEEECCCCCEEE
Confidence                                 012478899999975   7889999999999865433221 110111223344444445


Q ss_pred             EeeccCcCCCCCCCCCCccCCCCCCCCcccceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEE
Q 013898          175 YVSYKDKANHLDFLPGFEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVV  254 (434)
Q Consensus       175 fvd~~~~~~~g~~~p~f~~~~~~~~~~~~~~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~  254 (434)
                      |+..... ..  .. .     ..........+++|+||++.|+|++++..||++ |||+........+  +   .....+
T Consensus       128 l~~~~~~-~~--~~-~-----~~~~~~~~~~~~rlgHV~L~v~D~~~t~~Fy~~-LGf~~sd~~~~~~--g---~~~~~f  192 (365)
T 4ghg_A          128 FFFETTH-VE--RL-H-----MRYDLYSAGELVRLDHFNQVTPDVPRGRKYLED-LGFRVTEDIQDDE--G---TTYAAW  192 (365)
T ss_dssp             EECCBCC-CC--CC-T-----TCTTTCCTTCCCEEEEEEEEESCHHHHHHHHHH-TTCEEEEEEECTT--S---CEEEEE
T ss_pred             EEEEeec-cc--cc-c-----ccccccccccCcceeEEEEeecCHHHHHHHHHh-cCCEEEEEEecCC--C---ceeEEe
Confidence            4431100 00  00 0     000012334678999999999999999999965 9999876543211  1   123344


Q ss_pred             EEcCCCceEEEecccCCCCCCCchHHHHHhhcCCCCceEEEEEeCCHHH---HHHHHHHhcCCCCcee--ccCCCchhhH
Q 013898          255 LANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFR---TLREMRKRSGVGGFEF--MPSPPPTYYK  329 (434)
Q Consensus       255 l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G~GvqHIAf~vdDI~~---av~~L~~~~~~~Gv~f--l~~pP~~YY~  329 (434)
                      +.+......+.+..+                 .++|+||+||+|+|+++   +.++|++.    |+..  ...| .    
T Consensus       193 ~~~~~~hH~la~~~~-----------------~~~~lhHvaf~v~d~d~v~~~~d~l~~~----g~~~~i~~Gp-g----  246 (365)
T 4ghg_A          193 MHRKGTVHDTALTGG-----------------NGPRLHHVAFSTHEKHNIIQICDKMGAL----RISDRIERGP-G----  246 (365)
T ss_dssp             EESSSSSCSEEEEES-----------------SBSEEEEEEEECSSHHHHHHHHHHHHHT----TCGGGEEEEE-E----
T ss_pred             eecCCcccceeeecC-----------------CCCceeEEEEecCCHHHHHHHHHHHHhC----CCCceeEeCC-C----
Confidence            554433333443322                 34679999999998755   55677777    7642  1111 0    


Q ss_pred             hHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEEEEcccc
Q 013898          330 NLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFTKPV  370 (434)
Q Consensus       330 ~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llqifT~~~  370 (434)
                          |=+          +-+.-.+|-+|++|.++.+||.-.
T Consensus       247 ----RH~----------~~~~~f~Y~~dP~G~~iE~~t~g~  273 (365)
T 4ghg_A          247 ----RHG----------VSNAFYLYILDPDNHRIEIYTQDY  273 (365)
T ss_dssp             ----ECS----------TTCCEEEEEECTTCCEEEEEECCC
T ss_pred             ----ccC----------CCCcEEEEEECCCCceEEEEcCCc
Confidence                111          001223799999999999999753

>2ehz_A 1,2-dihydroxynaphthalene dioxygenase; extradiol dioxygenase, protein substrate complex, oxidoreduc; 1.35A {Pseudomonas SP} PDB: 2ei0_A* 2ei1_A* 2ei3_A* 2ei2_A

Probab=99.82  E-value=1.6e-18  Score=169.54  Aligned_cols=257  Identities=13%  Similarity=0.079  Sum_probs=159.7

Q ss_pred             CCCCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeC--CEEEEEEcCCCCCCCcccccCCCC
Q 013898           26 DRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSG--DLRFVFTAPYSPSISDAADAGNSS  103 (434)
Q Consensus        26 ~~~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G--~i~~vl~~p~~~~~~~~~~~~~~~  103 (434)
                      ..+.+++++||.|.|+|++++++||++.|||+++.+..  .+     ...++.+  ...+.+...               
T Consensus         3 ~~m~i~~i~hv~l~v~Dl~~a~~FY~~~LG~~~~~~~~--~~-----~~~~~~~~~~~~l~l~~~---------------   60 (302)
T 2ehz_A            3 KQAAVIELGYMGISVKDPDAWKSFATDMLGLQVLDEGE--KD-----RFYLRMDYWHHRIVVHHN---------------   60 (302)
T ss_dssp             -CCCEEEEEEEEEECSCHHHHHHHHHHTTCCEEECCSC--SS-----EEEEESSSBSCSEEEESS---------------
T ss_pred             CcccccEeeEEEEEeCCHHHHHHHHHhcCCCEEEeccC--Cc-----ceEEEeCCCceEEEEecC---------------
Confidence            34678999999999999999999999999999875421  11     1223322  223333220               


Q ss_pred             CCCCCCChhHHhHHHHhcCCceeEEEEEec---CHHHHHHHHHHcCCCCCCCCcccc---CceEEEEEEecCCeEEEEee
Q 013898          104 ASLPTFDHAACRSFAASHGLAARSIAVEVE---DADVAFNTSVAHGAKPSSPPVILD---NLAVIAEVQLYGDVVLRYVS  177 (434)
Q Consensus       104 ~~~~~~~~~~~~~~l~~hG~gv~~Iaf~V~---Dvd~a~~ra~~~Ga~~~~~p~~~~---~~~~~~~i~~~Gg~~~~fvd  177 (434)
                                       ...++.++||.|.   |+++++++++++|+++...|....   +......++.+.|..+.|+.
T Consensus        61 -----------------~~~~~~~~~~~v~~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~  123 (302)
T 2ehz_A           61 -----------------GQDDLEYLGWRVAGKPEFEALGQKLIDAGYKIRICDKVEAQERMVLGLMKTEDPGGNPTEIFW  123 (302)
T ss_dssp             -----------------CCSEEEEEEEEESSHHHHHHHHHHHHHTTCCCEECCHHHHHHHTEEEEEEEECTTSCEEEEEE
T ss_pred             -----------------CCCCeeEEEEEECCHHHHHHHHHHHHHCCCcEEECCccccccccceEEEEEECCCCCEEEEEE
Confidence                             1236779999995   689999999999998766654321   22334557788888888886


Q ss_pred             ccCcCCCCCCCCCCccCCCCCCCCcccceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccC--ceEEEE
Q 013898          178 YKDKANHLDFLPGFEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESG--LNSVVL  255 (434)
Q Consensus       178 ~~~~~~~g~~~p~f~~~~~~~~~~~~~~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g--~~s~~l  255 (434)
                      .+.......|.++. ...    ..-.....+|+|+++.|+|++++++|| ++|||+........ .   ..|  ....++
T Consensus       124 ~~~~~~~~~~~~~~-~~~----~~~~~~~~~l~hv~l~v~D~~~a~~FY-~~lG~~~~~~~~~~-~---~~g~~~~~~~~  193 (302)
T 2ehz_A          124 GPRIDMSNPFHPGR-PLH----GKFVTGDQGLGHCIVRQTDVAEAHKFY-SLLGFRGDVEYRIP-L---PNGMTAELSFM  193 (302)
T ss_dssp             EECBCTTSCCCCSS-CCS----SCBCCGGGCSCEEEECCSCHHHHHHHH-HHTTCBCCEEEEEE-C---TTSCEEEEEEE
T ss_pred             CCCccCCCCccCCC-Ccc----cceecCCCccceEEEEcCCHHHHHHHH-HhcCCeeeeEEecc-C---CCCcceEEEEE
Confidence            42111011122110 000    000124578999999999999999999 99999976432211 0   011  112233


Q ss_pred             EcCCCceEEEecccCCCCCCCchHHHHHhhcCCCCceEEEEEeCCHHH---HHHHHHHhcCCCCceeccCCCchhhHhHh
Q 013898          256 ANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFR---TLREMRKRSGVGGFEFMPSPPPTYYKNLK  332 (434)
Q Consensus       256 ~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G~GvqHIAf~vdDI~~---av~~L~~~~~~~Gv~fl~~pP~~YY~~l~  332 (434)
                      ..+.....+.+...                ....|++|+||.|+|+++   ++++|+++    |++++..| ....    
T Consensus       194 ~~~~~~~~~~~~~~----------------~~~~~~~hiaf~v~d~~~v~~~~~~l~~~----G~~~~~~p-~~~~----  248 (302)
T 2ehz_A          194 HCNARDHSIAFGAM----------------PAAKRLNHLMLEYTHMEDLGYTHQQFVKN----EIDIALQL-GIHA----  248 (302)
T ss_dssp             BSSSBSCSEEECSC----------------CCSSSEEEEEEEESSHHHHHHHHHHHHHT----TCCEEEEE-EECT----
T ss_pred             EeCCCCcEEEEecC----------------CCCCceeEEEEEcCCHHHHHHHHHHHHHC----CCcEEeCC-cccC----
Confidence            33221222222211                023579999999998764   66799999    99988543 2210    


Q ss_pred             hhcCCCCChhHHHHHHhcCeEEecCCCceEEEEEcccc
Q 013898          333 NRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFTKPV  370 (434)
Q Consensus       333 ~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llqifT~~~  370 (434)
                        .+            ..-.+|-+|++|.++++++...
T Consensus       249 --~~------------~~~~~~~~DPdG~~iEl~~~~~  272 (302)
T 2ehz_A          249 --ND------------KALTFYGATPSGWLIEPGWRGA  272 (302)
T ss_dssp             --TT------------CCEEEEEECTTSSEEEEEECCC
T ss_pred             --CC------------CceEEEEECCCCcEEEEEECce
Confidence              00            1125688999999999999754

>3zi1_A Glyoxalase domain-containing protein 4; isomerase; 1.90A {Homo sapiens}

Probab=99.79  E-value=7.4e-18  Score=167.64  Aligned_cols=246  Identities=13%  Similarity=0.135  Sum_probs=159.2

Q ss_pred             CCCCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCC---------ceeEEEEEEEeC----CEEEEEEcCCCCC
Q 013898           26 DRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTG---------NTVHASYLLRSG----DLRFVFTAPYSPS   92 (434)
Q Consensus        26 ~~~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g---------~~~~~~~~l~~G----~i~~vl~~p~~~~   92 (434)
                      ..|.+++++||.|.|+|++++++||+++|||+++.+...+.+         ......+.+..|    ...+.|..+....
T Consensus        21 ~~M~~~~i~Hv~l~V~Dle~s~~FY~~vLGl~~~~~~~~~~~~~a~~~g~~~~~~~~~~l~~~~~~~~~~leL~~~~~~~  100 (330)
T 3zi1_A           21 QSMAARRALHFVFKVGNRFQTARFYRDVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMVGFGPEDDHFVAELTYNYGVG  100 (330)
T ss_dssp             GGCSCCEEEEEEEECSCHHHHHHHHHHTSCCEEEEEEEEC---------CCCSCEEEEEEESSCTTTCCEEEEEEETTCC
T ss_pred             eecccceeeEEEEEeCCHHHHHHHHHHhcCCeEEEEeecchhhhhhccCCcCCceEEEEEecCCCCCccEEEEeccCCCC
Confidence            345678999999999999999999999999998876543211         011223344332    3455554422110


Q ss_pred             CCcccccCCCCCCCCCCChhHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeE
Q 013898           93 ISDAADAGNSSASLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVV  172 (434)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~  172 (434)
                                               ....+.|+.||||.|+|+   .++++++|+++...|.    .  ...+++++|..
T Consensus       101 -------------------------~~~~~~g~~hiaf~V~d~---~~~l~~~G~~~~~~~~----~--~~~~~DPdG~~  146 (330)
T 3zi1_A          101 -------------------------DYKLGNDFMGITLASSQA---VSNARKLEWPLTEVAE----G--VFETEAPGGYK  146 (330)
T ss_dssp             -------------------------CCCBCSSEEEEEEECHHH---HHHHHHHTCCCEEEET----T--EEEEECTTSCE
T ss_pred             -------------------------ccccCCCeeEEEEECchH---HHHHHHcCCceeccCC----c--eEEEECCCCCE
Confidence                                     012456899999999997   5677889998654331    1  34456777777


Q ss_pred             EEEeeccCcCCCCCCCCCCccCCCCCCCCcccceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceE
Q 013898          173 LRYVSYKDKANHLDFLPGFEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNS  252 (434)
Q Consensus       173 ~~fvd~~~~~~~g~~~p~f~~~~~~~~~~~~~~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s  252 (434)
                      +++++...            +           ....++|+.+.|.|++++++||+++|||+........       +  .
T Consensus       147 iel~~~~~------------~-----------~~~~i~hv~L~v~Dl~~a~~FY~~vLG~~~~~~~~~~-------~--~  194 (330)
T 3zi1_A          147 FYLQNRSL------------P-----------QSDPVLKVTLAVSDLQKSLNYWCNLLGMKIYENDEEK-------Q--R  194 (330)
T ss_dssp             EEEESSCC------------T-----------TSCSEEEEEEEESCHHHHHHHHHHTTCCEEEEEETTT-------T--E
T ss_pred             EEEEecCC------------C-----------CCCceeEEEEECCCHHHHHHHHHHhcCCEEEeeccCC-------c--E
Confidence            77776310            0           0123789999999999999999999999988654211       0  2


Q ss_pred             EEEEcCCCceEEEecccCCCCCCCchHHHHHhhcCCCCceEEEEEeC--CHHHHHHHHHHhcCCCCceeccCCCchhhHh
Q 013898          253 VVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSE--DIFRTLREMRKRSGVGGFEFMPSPPPTYYKN  330 (434)
Q Consensus       253 ~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G~GvqHIAf~vd--DI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~  330 (434)
                      .++..++....|.+.....    .        ...+.|+.|+||.|+  |+++++++|+++    |++++..| ..+ +.
T Consensus       195 ~~l~~g~~~~~l~l~~~~~----~--------~~~~~~~~hiaf~v~~~dld~~~~rl~~~----G~~i~~~~-~~~-~~  256 (330)
T 3zi1_A          195 ALLGYADNQCKLELQGVKG----G--------VDHAAAFGRIAFSCPQKELPDLEDLMKRE----NQKILTPL-VSL-DT  256 (330)
T ss_dssp             EEEESSTTSCEEEEEECSS----C--------CCCBTTCCEEEEEECGGGHHHHHHHHHHT----TCEEEEEE-EEE-CC
T ss_pred             EEEEeCCceEEEEECCCCC----C--------CCCCCCCceEEEEEEcccHHHHHHHHHHc----CCcEecCc-eec-cc
Confidence            3344444455666644321    0        113567899999995  899999999999    99987542 321 00


Q ss_pred             HhhhcCCCCChhHHHHHHhcCeEEecCCCceEEEEEccc
Q 013898          331 LKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFTKP  369 (434)
Q Consensus       331 l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llqifT~~  369 (434)
                      - .+.             ....+|-+|++|+++++++..
T Consensus       257 p-g~~-------------g~~~~~f~DPdG~~iEl~~~~  281 (330)
T 3zi1_A          257 P-GKA-------------TVQVVILADPDGHEICFVGDE  281 (330)
T ss_dssp             T-TSC-------------CEEEEEEECTTCCEEEEEEHH
T ss_pred             C-CCC-------------ceEEEEEECCCCCEEEEEEec
Confidence            0 000             113567788888777776654

>3oxh_A RV0577 protein; kinase regulation, antibiotic resistance, mycobacterium tube structural genomics, PSI, protein structure initiative; HET: PMB XYL; 1.75A {Mycobacterium tuberculosis}

Probab=99.75  E-value=2.6e-16  Score=152.94  Aligned_cols=248  Identities=14%  Similarity=0.077  Sum_probs=154.3

Q ss_pred             ceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEE-EEEcCCCCCCCcccccCCCCCCCCCC
Q 013898           31 NRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRF-VFTAPYSPSISDAADAGNSSASLPTF  109 (434)
Q Consensus        31 ~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~-vl~~p~~~~~~~~~~~~~~~~~~~~~  109 (434)
                      ..+.||+|.|+|++++++||+++|||+....... .+ . .....+..++..+ .+... .+.   .             
T Consensus        31 g~~~~v~l~v~D~~~a~~FY~~vlG~~~~~~~~~-~~-~-~~~~~~~~~g~~~~~l~~~-~~~---~-------------   90 (282)
T 3oxh_A           31 GTPNWVDLQTTDQSAAKKFYTSLFGWGYDDNPVP-GG-G-GVYSMATLNGEAVAAIAPM-PPG---A-------------   90 (282)
T ss_dssp             TSEEEEEEEESCHHHHHHHHHHHHCCEEEEEC--------CCEEEEEETTEEEEEEEEC-CSC---C-------------
T ss_pred             CCcEEEEEecCCHHHHHHHHHHhcCcEEeecCCC-CC-c-cCEEEEEeCCeeeEeeccC-CCC---C-------------
Confidence            4799999999999999999999999998765321 11 0 0123344444322 22221 100   0             


Q ss_pred             ChhHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEeeccCcCCCCCCCC
Q 013898          110 DHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSYKDKANHLDFLP  189 (434)
Q Consensus       110 ~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd~~~~~~~g~~~p  189 (434)
                               .....+...++|.|+|+++++++++++|++++.+|....+.-..+.++++.|..+.+.+... .      +
T Consensus        91 ---------~~~~~~~~~~~~~v~d~d~~~~~l~~~G~~~~~~p~~~~~~g~~~~~~DP~G~~i~l~~~~~-~------~  154 (282)
T 3oxh_A           91 ---------PEGMPPIWNTYIAVDDVDAVVDKVVPGGGQVMMPAFDIGDAGRMSFITDPTGAAVGLWQANR-H------I  154 (282)
T ss_dssp             ------------CCCEEEEEEECSCHHHHHTTTTTTTCEEEEEEEEETTTEEEEEEECTTCCEEEEEEESS-C------C
T ss_pred             ---------CCCCCCcEEEEEEeCCHHHHHHHHHHCCCEEEECCEecCCCeEEEEEECCCCCEEEEEEccc-c------C
Confidence                     01122345799999999999999999999987766543222345666777777777776421 0      1


Q ss_pred             CCccCCCCCCCCcccceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEeccc
Q 013898          190 GFEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEP  269 (434)
Q Consensus       190 ~f~~~~~~~~~~~~~~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~  269 (434)
                      ++..         ......++|+.|.|+|++++.+||+++|||+.......+..     ..  ..+..+...+ ..+...
T Consensus       155 ~~~~---------~~~~~~~~~~~l~v~D~~~a~~FY~~vlG~~~~~~~~~~~~-----~~--~~~~~~~~~~-~~~~~~  217 (282)
T 3oxh_A          155 GATL---------VNETGTLIWNELLTDKPDLALAFYEAVVGLTHSSMEIAAGQ-----NY--RVLKAGDAEV-GGCMEP  217 (282)
T ss_dssp             SCSB---------CSSTTSEEEEEEECSCHHHHHHHHHHHHCCEEEEC------------C--EEEEETTEEE-EEEECC
T ss_pred             Cccc---------cCCCCccEEEEEEcCCHHHHHHHHHHHhCCeeeeccCCCCc-----ce--EEEEcCCccE-eeecCC
Confidence            1110         01235799999999999999999999999997653200000     01  1222222111 112111


Q ss_pred             CCCCCCCchHHHHHhhcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHh
Q 013898          270 VFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEE  349 (434)
Q Consensus       270 ~~g~~~~s~i~~fl~~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~  349 (434)
                           ..         ...++-.|++|.|+|+++++++++++    |++++..| ...        +           -.
T Consensus       218 -----~~---------~~~~~~~~~~~~v~dvd~~~~~~~~~----G~~~~~~p-~~~--------~-----------~~  259 (282)
T 3oxh_A          218 -----PM---------PGVPNHWHVYFAVDDADATAAKAAAA----GGQVIAEP-ADI--------P-----------SV  259 (282)
T ss_dssp             -----SS---------TTCCSEEEEEEECSCHHHHHHHHHHT----TCEEEEEE-EEE--------T-----------TT
T ss_pred             -----CC---------CCCCCeEEEEEEeCCHHHHHHHHHHc----CCEEecCC-eEc--------C-----------CC
Confidence                 00         02345679999999999999999999    99998643 321        1           01


Q ss_pred             cCeEEecCCCceEEEEEccc
Q 013898          350 LGVLVDRDDQGTLLQIFTKP  369 (434)
Q Consensus       350 ~~iL~D~d~~g~llqifT~~  369 (434)
                      ..+.+-+|++|.++++++.+
T Consensus       260 ~~~~~~~DPdGn~~~l~~~~  279 (282)
T 3oxh_A          260 GRFAVLSDPQGAIFSVLKAA  279 (282)
T ss_dssp             EEEEEEECTTSCEEEEEEEC
T ss_pred             eEEEEEECCCCCEEEEEecC
Confidence            23567788899988888753

>3gm5_A Lactoylglutathione lyase and related lyases; sheet-helix-sheet-sheet-sheet motif, isomerase; HET: CIT; 2.00A {Thermoanaerobacter tengcongensis}

Probab=99.56  E-value=9.5e-15  Score=128.65  Aligned_cols=111  Identities=19%  Similarity=0.303  Sum_probs=85.1

Q ss_pred             cccceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccC-------ccc--ccCceEEEEEcCCCceEEEecccCCC
Q 013898          202 LDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDV-------GTS--ESGLNSVVLANNDEMVLLPMNEPVFG  272 (434)
Q Consensus       202 ~~~~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~-------~~~--~~g~~s~~l~~~~g~v~i~L~e~~~g  272 (434)
                      .+..+++|+||++.|+|++++++||+++|||+.......++.       .+.  ..+++..++..  +...|+|.++.  
T Consensus        13 ~~~~~~~i~Hv~i~V~Dle~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--g~~~leL~~~~--   88 (159)
T 3gm5_A           13 NILDMRNTVQIGIVVRDIEESLQNYAEFFGVEKPQWFWTDDYSKAHTKFNGRPTKARAKLAFFEL--GPLQLELIEPD--   88 (159)
T ss_dssp             SCCCGGGCEEEEEECSCHHHHHHHHHHHTTCCCCCCEECCCHHHHCCEETTEECCCCEEEEEEEE--TTEEEEEEEEC--
T ss_pred             cccccccccEEEEEeCCHHHHHHHHHHhhCCCCceEEecCCcccccceeecccccceEEEEEEec--CCEEEEEEEEC--
Confidence            345789999999999999999999999999997654332110       000  12344444443  46788998875  


Q ss_pred             CCCCchHHHHHhhcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccC
Q 013898          273 TKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPS  322 (434)
Q Consensus       273 ~~~~s~i~~fl~~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~  322 (434)
                       ...+.+.+|++.+ +.|++||||.|+||++++++|+++    |++++..
T Consensus        89 -~~~~~~~~~l~~~-~~g~~Hiaf~v~di~~~~~~l~~~----G~~~~~~  132 (159)
T 3gm5_A           89 -ENPSTWREFLDKN-GEGIHHIAFVVKDMDRKVEELYRK----GMKVIQK  132 (159)
T ss_dssp             -SSSCHHHHHHHHH-CSEEEEEEEECSCHHHHHHHHHHT----TCCEEEE
T ss_pred             -CCCChhHHHhhcC-CceEEEEEEEcCCHHHHHHHHHHC----CCcEeec
Confidence             3567889999874 789999999999999999999999    9999864

>3oa4_A Glyoxalase, BH1468 protein; structural genomics, protein structure initiative, glyoxalas PSI-biology, lyase; 1.94A {Bacillus halodurans}

Probab=99.55  E-value=1e-13  Score=122.70  Aligned_cols=129  Identities=16%  Similarity=0.223  Sum_probs=100.1

Q ss_pred             CcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCC
Q 013898           29 RVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPT  108 (434)
Q Consensus        29 ~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~  108 (434)
                      .+.+|+||.|.|+|++++++||++.|||++..+...+.+  ......++.|+..+.|.++..+.                
T Consensus         5 ~~~~i~Hv~l~V~Dl~~a~~FY~~~LG~~~~~~~~~~~~--~~~~~~~~~g~~~l~l~~~~~~~----------------   66 (161)
T 3oa4_A            5 KSNKLDHIGIAVTSIKDVLPFYVGSLKLKLLGMEDLPSQ--GVKIAFLEIGESKIELLEPLSEE----------------   66 (161)
T ss_dssp             CCCEEEEEEEECSCHHHHHHHHHHTSCCEEEEEEEEGGG--TEEEEEEEETTEEEEEEEESSTT----------------
T ss_pred             ccCcCCEEEEEECCHHHHHHHHHHccCCeEeeeeccCCC--CeEEEEEeCCCeEEEEEeECCCC----------------
Confidence            478999999999999999999999999998876432221  24567778899999988765432                


Q ss_pred             CChhHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCC-CccccCceEEEEE--EecCCeEEEEeec
Q 013898          109 FDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSP-PVILDNLAVIAEV--QLYGDVVLRYVSY  178 (434)
Q Consensus       109 ~~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~-p~~~~~~~~~~~i--~~~Gg~~~~fvd~  178 (434)
                         +...+++..++.|+.||||.|+|+++++++++++|++++.+ |........+..+  ++++|..++|+++
T Consensus        67 ---~~~~~~~~~~~~g~~Hiaf~V~Did~~~~~l~~~G~~~~~~~~~~~~~g~~~~f~~~~DPdG~~iEl~~~  136 (161)
T 3oa4_A           67 ---SPIAKFIQKRGEGIHHIAIGVKSIEERIQEVKENGVQMINDEPVPGARGAQVAFLHPRSARGVLYEFCEK  136 (161)
T ss_dssp             ---SHHHHHHHHHCSEEEEEEEECSCHHHHHHHHHHTTCCBSCSSCEECGGGCEEEEBCGGGTTTCCEEEEEC
T ss_pred             ---ChHHHHhhcCCCCeEEEEEEECCHHHHHHHHHHCCCEecccCcccCCCCcEEEEEeccCCCeEEEEEEec
Confidence               34567888899999999999999999999999999998776 5433223445555  3677777788775

>3hdp_A Glyoxalase-I; glutathione,lyase, methylglyoxal,11003P,PSI2, structural GENOMIC,NYSGXRC., structural genomics; 2.06A {Clostridium acetobutylicum} PDB: 2qh0_A

Probab=99.55  E-value=2.9e-14  Score=121.10  Aligned_cols=102  Identities=20%  Similarity=0.229  Sum_probs=79.5

Q ss_pred             ceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHh
Q 013898          205 GIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLE  284 (434)
Q Consensus       205 ~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~  284 (434)
                      .+++|+||++.|+|++++++||+ +|||+....... ..   ..+.+..++..  +...|.|.++..   ..+.+.+|++
T Consensus         4 M~~~i~hv~i~v~Dl~~a~~FY~-~lG~~~~~~~~~-~~---~~~~~~~~~~~--~~~~l~l~~~~~---~~~~~~~~~~   73 (133)
T 3hdp_A            4 MSLKVHHIGYAVKNIDSALKKFK-RLGYVEESEVVR-DE---VRKVYIQFVIN--GGYRVELVAPDG---EDSPINKTIK   73 (133)
T ss_dssp             CCCCEEEEEEECSCHHHHHHHHH-HTTCEECSCCEE-ET---TTTEEEEEEEE--TTEEEEEEEESS---TTCTHHHHTT
T ss_pred             cceeeCEEEEEECCHHHHHHHHH-HcCCeeecceec-cC---CcceEEEEEeC--CCEEEEEEecCC---CCChHHHHHh
Confidence            46789999999999999999999 999998654211 11   12344444444  457888888752   4567788877


Q ss_pred             hcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccC
Q 013898          285 HNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPS  322 (434)
Q Consensus       285 ~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~  322 (434)
                      .  +.|++||||.|+|+++++++|+++    |++++..
T Consensus        74 ~--~~g~~hiaf~v~di~~~~~~l~~~----G~~~~~~  105 (133)
T 3hdp_A           74 K--GSTPYHICYEVEDIQKSIEEMSQI----GYTLFKK  105 (133)
T ss_dssp             T--SCEEEEEEEEESCHHHHHHHHTTT----TEEEEEE
T ss_pred             c--CCceEEEEEEcCCHHHHHHHHHHc----CCccccC
Confidence            6  789999999999999999999999    9999864

>3oa4_A Glyoxalase, BH1468 protein; structural genomics, protein structure initiative, glyoxalas PSI-biology, lyase; 1.94A {Bacillus halodurans}

Probab=99.53  E-value=1e-13  Score=122.69  Aligned_cols=103  Identities=17%  Similarity=0.307  Sum_probs=82.3

Q ss_pred             ceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHh
Q 013898          205 GIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLE  284 (434)
Q Consensus       205 ~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~  284 (434)
                      .+.+|+||++.|+|++++++||+++|||+........     ..+.+..++..  +...|.|.++..   ..+.+.+|+.
T Consensus         5 ~~~~i~Hv~l~V~Dl~~a~~FY~~~LG~~~~~~~~~~-----~~~~~~~~~~~--g~~~l~l~~~~~---~~~~~~~~~~   74 (161)
T 3oa4_A            5 KSNKLDHIGIAVTSIKDVLPFYVGSLKLKLLGMEDLP-----SQGVKIAFLEI--GESKIELLEPLS---EESPIAKFIQ   74 (161)
T ss_dssp             CCCEEEEEEEECSCHHHHHHHHHHTSCCEEEEEEEEG-----GGTEEEEEEEE--TTEEEEEEEESS---TTSHHHHHHH
T ss_pred             ccCcCCEEEEEECCHHHHHHHHHHccCCeEeeeeccC-----CCCeEEEEEeC--CCeEEEEEeECC---CCChHHHHhh
Confidence            4679999999999999999999999999987654321     12244445554  457888888752   4577888888


Q ss_pred             hcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccC
Q 013898          285 HNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPS  322 (434)
Q Consensus       285 ~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~  322 (434)
                      .+ +.|++||||.|+||++++++|+++    |++++..
T Consensus        75 ~~-~~g~~Hiaf~V~Did~~~~~l~~~----G~~~~~~  107 (161)
T 3oa4_A           75 KR-GEGIHHIAIGVKSIEERIQEVKEN----GVQMIND  107 (161)
T ss_dssp             HH-CSEEEEEEEECSCHHHHHHHHHHT----TCCBSCS
T ss_pred             cC-CCCeEEEEEEECCHHHHHHHHHHC----CCEeccc
Confidence            74 789999999999999999999999    9998864

>3gm5_A Lactoylglutathione lyase and related lyases; sheet-helix-sheet-sheet-sheet motif, isomerase; HET: CIT; 2.00A {Thermoanaerobacter tengcongensis}

Probab=99.49  E-value=2.1e-13  Score=119.94  Aligned_cols=132  Identities=14%  Similarity=0.139  Sum_probs=98.2

Q ss_pred             CCCCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCC---------C---ceeEEEEEEEeCCEEEEEEcCCCCCC
Q 013898           26 DRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLST---------G---NTVHASYLLRSGDLRFVFTAPYSPSI   93 (434)
Q Consensus        26 ~~~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~---------g---~~~~~~~~l~~G~i~~vl~~p~~~~~   93 (434)
                      .+..+.+|+||.+.|+|++++++||++.|||+++.+...+.         |   .......+++.|+..+.|.++.... 
T Consensus        13 ~~~~~~~i~Hv~i~V~Dle~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~leL~~~~~~~-   91 (159)
T 3gm5_A           13 NILDMRNTVQIGIVVRDIEESLQNYAEFFGVEKPQWFWTDDYSKAHTKFNGRPTKARAKLAFFELGPLQLELIEPDENP-   91 (159)
T ss_dssp             SCCCGGGCEEEEEECSCHHHHHHHHHHHTTCCCCCCEECCCHHHHCCEETTEECCCCEEEEEEEETTEEEEEEEECSSS-
T ss_pred             cccccccccEEEEEeCCHHHHHHHHHHhhCCCCceEEecCCcccccceeecccccceEEEEEEecCCEEEEEEEECCCC-
Confidence            45678999999999999999999999999999765332211         0   0124567778899999998864321 


Q ss_pred             CcccccCCCCCCCCCCChhHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecC--Ce
Q 013898           94 SDAADAGNSSASLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYG--DV  171 (434)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~G--g~  171 (434)
                                        +...+|+.+++.|+.||||+|+|+++++++++++|++++..+..  ....+..+++++  |.
T Consensus        92 ------------------~~~~~~l~~~~~g~~Hiaf~v~di~~~~~~l~~~G~~~~~~~~~--~g~~~~~~~dpd~~G~  151 (159)
T 3gm5_A           92 ------------------STWREFLDKNGEGIHHIAFVVKDMDRKVEELYRKGMKVIQKGDF--EGGRYAYIDTLRALKV  151 (159)
T ss_dssp             ------------------CHHHHHHHHHCSEEEEEEEECSCHHHHHHHHHHTTCCEEEEEEE--TTEEEEEESCHHHHSS
T ss_pred             ------------------ChhHHHhhcCCceEEEEEEEcCCHHHHHHHHHHCCCcEeecccc--CCeeEEEEeccccCcE
Confidence                              35678888899999999999999999999999999987655422  123445555555  66


Q ss_pred             EEEEeec
Q 013898          172 VLRYVSY  178 (434)
Q Consensus       172 ~~~fvd~  178 (434)
                      .++|+++
T Consensus       152 ~iEl~e~  158 (159)
T 3gm5_A          152 MIELLEN  158 (159)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEec
Confidence            6666653

>3pkv_A Toxoflavin lyase (TFLA); metalloenzyme, vicinal oxygen chelate superfamily; 1.34A {Paenibacillus polymyxa} PDB: 3pkw_A 3pkx_A* 3oul_A 3oum_A*

Probab=99.49  E-value=1.2e-12  Score=125.36  Aligned_cols=159  Identities=8%  Similarity=-0.012  Sum_probs=108.1

Q ss_pred             CCCCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCC
Q 013898           26 DRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSAS  105 (434)
Q Consensus        26 ~~~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~  105 (434)
                      ..+.+.+++||.+.|+|++++.+||+++|||+++.+.+        ..+.++.|+..+.|.....               
T Consensus        20 ~~~~~~~l~hV~L~V~Dle~s~~FY~~vLGl~~~~~~~--------~~~~L~~g~~~l~l~~~~~---------------   76 (252)
T 3pkv_A           20 FQGHMTSIKQLTLYTAELDRMLAFYTNMLGAQHVHEQA--------DAFTIQLGVSQIQFRAAAD---------------   76 (252)
T ss_dssp             -----CCEEEEEEEESCHHHHHHHHHHHHCGGGEEECS--------SEEEEEETTEEEEEEECCT---------------
T ss_pred             ccCcCceEEEEEEEeCCHHHHHHHHHHhcCCEEEEccC--------CEEEEEeCCEEEEEEECCC---------------
Confidence            45678999999999999999999999999999987643        1345666887777764211               


Q ss_pred             CCCCChhHHhHHHHhcCCceeEEEEEec--CHHHHHHHHHHcCCCCCCC-Ccc----ccCceEEEEEEecCCeEEEEeec
Q 013898          106 LPTFDHAACRSFAASHGLAARSIAVEVE--DADVAFNTSVAHGAKPSSP-PVI----LDNLAVIAEVQLYGDVVLRYVSY  178 (434)
Q Consensus       106 ~~~~~~~~~~~~l~~hG~gv~~Iaf~V~--Dvd~a~~ra~~~Ga~~~~~-p~~----~~~~~~~~~i~~~Gg~~~~fvd~  178 (434)
                                     .+.++.++||+|+  |++++++++.++ +++..+ +..    .........++++.|..++|+..
T Consensus        77 ---------------~~~~~~hiaf~V~~~dld~~~~rL~~~-v~~~~~~~~~~~~~~~~g~~~~~f~DPdGn~iEl~~~  140 (252)
T 3pkv_A           77 ---------------GTKPFYHIAINIAANHFQEGKAWLSGF-GELLTENDEDQAYFPFFNAYSCYVEDPSGNIIELISR  140 (252)
T ss_dssp             ---------------TCCCCCEEEEEECTTCHHHHHHHHTTS-SCCCCBTTBSCEEETTTTEEEEEEECTTCCEEEEEEE
T ss_pred             ---------------CCCCeeEEEEEecHHHHHHHHHHHHhc-ceEeccCCccccccccCCeEEEEEECCCCCEEEEEEe
Confidence                           1235679999886  589999999999 876542 221    11122333455566666666653


Q ss_pred             cCcCCCCCCCCCCccCCCCCCCCcccceeeeeeeeEecCCHHHHHHHHHHhhCCeeee
Q 013898          179 KDKANHLDFLPGFEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFA  236 (434)
Q Consensus       179 ~~~~~~g~~~p~f~~~~~~~~~~~~~~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~  236 (434)
                      +..          .++...  +.....+++++||++.|+|++++.+|| ++|||+...
T Consensus       141 ~~~----------~~~~~~--~~~~~~i~glghV~L~v~d~~~~~~fl-~~LG~~~~~  185 (252)
T 3pkv_A          141 QQA----------APVLDK--PFSADQLLSIGEINITTSDVEQAATRL-KQAELPVKL  185 (252)
T ss_dssp             SSS----------SCCCCS--CCCGGGCCEEEEEEEECSCHHHHHHHH-HHTTCCCCG
T ss_pred             CCC----------CccccC--CCCHHHCcEeeeEEEEeCCHHHHHHHH-HHcCCCccc
Confidence            210          111111  112246899999999999999999999 999999874

>3rmu_A Methylmalonyl-COA epimerase, mitochondrial; structural genomics consortium, SGC, vitamin B12, mitochondr isomerase; HET: PG4; 1.80A {Homo sapiens} SCOP: d.32.1.0

Probab=99.48  E-value=3.7e-13  Score=113.16  Aligned_cols=105  Identities=20%  Similarity=0.365  Sum_probs=81.2

Q ss_pred             ceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHh
Q 013898          205 GIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLE  284 (434)
Q Consensus       205 ~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~  284 (434)
                      .+.+|+|+++.|+|++++++||+++|||+........+     .+....++..+  ...+.|..+..   ..+....++.
T Consensus         2 m~~~i~hv~l~v~D~~~a~~FY~~~lG~~~~~~~~~~~-----~~~~~~~~~~~--~~~~~l~~~~~---~~~~~~~~~~   71 (134)
T 3rmu_A            2 MLGRLNHVAIAVPDLEKAAAFYKNILGAQVSEAVPLPE-----HGVSVVFVNLG--NTKMELLHPLG---LDSPIAGFLQ   71 (134)
T ss_dssp             CEEEEEEEEEECSCHHHHHHHHHHTSCCEECCCEEEGG-----GTEEEEEEECS--SSEEEEEEECS---TTCTTHHHHH
T ss_pred             ccceeeeEEEEeCCHHHHHHHHHHhcCCEEeEeeecCC-----CCEEEEEEecC--CEEEEEEecCC---CCchhhhhhh
Confidence            47899999999999999999999999999876543111     23445555553  35666666542   3456677887


Q ss_pred             hcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCC
Q 013898          285 HNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSP  323 (434)
Q Consensus       285 ~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~p  323 (434)
                      .+.+.|++||||.|+|+++++++|+++    |++++..|
T Consensus        72 ~~~~~g~~hi~~~v~d~~~~~~~l~~~----G~~~~~~~  106 (134)
T 3rmu_A           72 KNKAGGMHHICIEVDNINAAVMDLKKK----KIRSLSEE  106 (134)
T ss_dssp             HCTTCEEEEEEEEESCHHHHHHHHHHT----TCTTBCCC
T ss_pred             ccCCCCceEEEEEcCCHHHHHHHHHHc----CCcccCCC
Confidence            777789999999999999999999999    99987643

>1jc4_A Methylmalonyl-COA epimerase; vicinal oxygen chelate superfamily, isomerase; 2.00A {Propionibacterium freudenreichiisubsp} SCOP: d.32.1.4 PDB: 1jc5_A

Probab=99.47  E-value=7.5e-13  Score=113.91  Aligned_cols=134  Identities=22%  Similarity=0.393  Sum_probs=95.4

Q ss_pred             ceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCC----ceEEEecccCCCCCCCchHH
Q 013898          205 GIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDE----MVLLPMNEPVFGTKRKSQIQ  280 (434)
Q Consensus       205 ~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g----~v~i~L~e~~~g~~~~s~i~  280 (434)
                      .+.+++|+++.|+|++++++||+++|||+........+     .+....++..+++    ...|.|.++..   ..+++.
T Consensus         6 m~~~~~hv~l~v~D~~~a~~FY~~~lG~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~l~l~~~~~---~~~~~~   77 (148)
T 1jc4_A            6 LFICIDHVAYACPDADEASKYYQETFGWHELHREENPE-----QGVVEIMMAPAAKLTEHMTQVQVMAPLN---DESTVA   77 (148)
T ss_dssp             CCSEEEEEEEECSCHHHHHHHHHHHHCCEEEEEEEETT-----TTEEEEEEESSSSCCTTCCEEEEEEESS---TTSHHH
T ss_pred             ccceeeEEEEEeCCHHHHHHHHHHccCceeeecccCCC-----CCeEEEEEEcCCCCcCcceEEEEeecCC---CCChHH
Confidence            57899999999999999999999999999876543111     1244455555442    26788887642   356777


Q ss_pred             HHHhhcCC-CCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEe--cC
Q 013898          281 TYLEHNEG-AGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVD--RD  357 (434)
Q Consensus       281 ~fl~~~~G-~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D--~d  357 (434)
                      +|+..+++ .|++||||.|+||++++++|+++    |++++..+|...       ..            ...+.+-  +|
T Consensus        78 ~~~~~~~~~~g~~h~~~~v~d~~~~~~~l~~~----G~~~~~~~p~~~-------~~------------g~~~~~~~~~D  134 (148)
T 1jc4_A           78 KWLAKHNGRAGLHHMAWRVDDIDAVSATLRER----GVQLLYDEPKLG-------TG------------GNRINFMHPKS  134 (148)
T ss_dssp             HHHHHTTTCCEEEEEEEECSCHHHHHHHHHHH----TCCBSCSSCEEC-------SS------------SCEEEEBCGGG
T ss_pred             HHHHhCCCCCceEEEEEECCCHHHHHHHHHHC----CCeecCcCcccC-------CC------------ceEEEEEeecC
Confidence            88877432 78999999999999999999999    999884333220       00            1123333  78


Q ss_pred             CCceEEEEEccc
Q 013898          358 DQGTLLQIFTKP  369 (434)
Q Consensus       358 ~~g~llqifT~~  369 (434)
                      ++|+++++++.|
T Consensus       135 PdG~~iel~~~~  146 (148)
T 1jc4_A          135 GKGVLIELTQYP  146 (148)
T ss_dssp             GTTSCEEEEECC
T ss_pred             CCcEEEEEEecC
Confidence            888888887654

>3hdp_A Glyoxalase-I; glutathione,lyase, methylglyoxal,11003P,PSI2, structural GENOMIC,NYSGXRC., structural genomics; 2.06A {Clostridium acetobutylicum} PDB: 2qh0_A

Probab=99.47  E-value=3.4e-13  Score=114.42  Aligned_cols=126  Identities=14%  Similarity=0.122  Sum_probs=93.0

Q ss_pred             CcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEe-cCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCC
Q 013898           29 RVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKS-DLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLP  107 (434)
Q Consensus        29 ~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~-~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~  107 (434)
                      ++++++||.+.|+|++++++||+ .|||++..+. ..+.  ......+++.|+..+.|.++..+.               
T Consensus         4 M~~~i~hv~i~v~Dl~~a~~FY~-~lG~~~~~~~~~~~~--~~~~~~~~~~~~~~l~l~~~~~~~---------------   65 (133)
T 3hdp_A            4 MSLKVHHIGYAVKNIDSALKKFK-RLGYVEESEVVRDEV--RKVYIQFVINGGYRVELVAPDGED---------------   65 (133)
T ss_dssp             CCCCEEEEEEECSCHHHHHHHHH-HTTCEECSCCEEETT--TTEEEEEEEETTEEEEEEEESSTT---------------
T ss_pred             cceeeCEEEEEECCHHHHHHHHH-HcCCeeecceeccCC--cceEEEEEeCCCEEEEEEecCCCC---------------
Confidence            46899999999999999999999 9999986542 1111  124556677799999998865422               


Q ss_pred             CCChhHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCcc--ccCceEEEEEEecCCeEEEEee
Q 013898          108 TFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVI--LDNLAVIAEVQLYGDVVLRYVS  177 (434)
Q Consensus       108 ~~~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~--~~~~~~~~~i~~~Gg~~~~fvd  177 (434)
                          +...+++.+ +.|+.||||+|+|+++++++++++|++++.+|..  .........+++++|..+++++
T Consensus        66 ----~~~~~~~~~-~~g~~hiaf~v~di~~~~~~l~~~G~~~~~~p~~~~~~~g~~~~~~~dPdG~~iEl~e  132 (133)
T 3hdp_A           66 ----SPINKTIKK-GSTPYHICYEVEDIQKSIEEMSQIGYTLFKKAEIAPAIDNRKVAFLFSTDIGLIELLE  132 (133)
T ss_dssp             ----CTHHHHTTT-SCEEEEEEEEESCHHHHHHHHTTTTEEEEEEEEEEGGGTTEEEEEEEETTTEEEEEEE
T ss_pred             ----ChHHHHHhc-CCceEEEEEEcCCHHHHHHHHHHcCCccccCCeecccCCCceEEEEECCCceEEEEec
Confidence                234566766 8899999999999999999999999987765432  2223445556666666666665

>1jc4_A Methylmalonyl-COA epimerase; vicinal oxygen chelate superfamily, isomerase; 2.00A {Propionibacterium freudenreichiisubsp} SCOP: d.32.1.4 PDB: 1jc5_A

Probab=99.47  E-value=1.4e-12  Score=112.28  Aligned_cols=128  Identities=15%  Similarity=0.193  Sum_probs=91.3

Q ss_pred             CcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCC------EEEEEEcCCCCCCCcccccCCC
Q 013898           29 RVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGD------LRFVFTAPYSPSISDAADAGNS  102 (434)
Q Consensus        29 ~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~------i~~vl~~p~~~~~~~~~~~~~~  102 (434)
                      .+.+++||.|.|+|++++++||+++|||++..+...+..  ......++.|+      ..|.|..+..+.          
T Consensus         6 m~~~~~hv~l~v~D~~~a~~FY~~~lG~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~l~l~~~~~~~----------   73 (148)
T 1jc4_A            6 LFICIDHVAYACPDADEASKYYQETFGWHELHREENPEQ--GVVEIMMAPAAKLTEHMTQVQVMAPLNDE----------   73 (148)
T ss_dssp             CCSEEEEEEEECSCHHHHHHHHHHHHCCEEEEEEEETTT--TEEEEEEESSSSCCTTCCEEEEEEESSTT----------
T ss_pred             ccceeeEEEEEeCCHHHHHHHHHHccCceeeecccCCCC--CeEEEEEEcCCCCcCcceEEEEeecCCCC----------
Confidence            578999999999999999999999999998876432211  13456677776      778887754321          


Q ss_pred             CCCCCCCChhHHhHHHHhcC--CceeEEEEEecCHHHHHHHHHHcCCCCC-CCCccccCceEEEEE--EecCCeEEEEee
Q 013898          103 SASLPTFDHAACRSFAASHG--LAARSIAVEVEDADVAFNTSVAHGAKPS-SPPVILDNLAVIAEV--QLYGDVVLRYVS  177 (434)
Q Consensus       103 ~~~~~~~~~~~~~~~l~~hG--~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~-~~p~~~~~~~~~~~i--~~~Gg~~~~fvd  177 (434)
                               +...+|+..++  .|+.||+|.|+|+++++++++++|++++ ..|........+..+  +++.|..+.|++
T Consensus        74 ---------~~~~~~~~~~~~~~g~~h~~~~v~d~~~~~~~l~~~G~~~~~~~p~~~~~g~~~~~~~~~DPdG~~iel~~  144 (148)
T 1jc4_A           74 ---------STVAKWLAKHNGRAGLHHMAWRVDDIDAVSATLRERGVQLLYDEPKLGTGGNRINFMHPKSGKGVLIELTQ  144 (148)
T ss_dssp             ---------SHHHHHHHHTTTCCEEEEEEEECSCHHHHHHHHHHHTCCBSCSSCEECSSSCEEEEBCGGGGTTSCEEEEE
T ss_pred             ---------ChHHHHHHhCCCCCceEEEEEECCCHHHHHHHHHHCCCeecCcCcccCCCceEEEEEeecCCCcEEEEEEe
Confidence                     23466778888  7999999999999999999999999987 345432122233333  444454555544

>3rmu_A Methylmalonyl-COA epimerase, mitochondrial; structural genomics consortium, SGC, vitamin B12, mitochondr isomerase; HET: PG4; 1.80A {Homo sapiens} SCOP: d.32.1.0

Probab=99.43  E-value=1.9e-12  Score=108.81  Aligned_cols=104  Identities=15%  Similarity=0.197  Sum_probs=80.1

Q ss_pred             CcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCC
Q 013898           29 RVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPT  108 (434)
Q Consensus        29 ~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~  108 (434)
                      ++.+++||.+.|+|++++++||++.|||+...+...+.  .......++.|+..+.|..+....                
T Consensus         2 m~~~i~hv~l~v~D~~~a~~FY~~~lG~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~----------------   63 (134)
T 3rmu_A            2 MLGRLNHVAIAVPDLEKAAAFYKNILGAQVSEAVPLPE--HGVSVVFVNLGNTKMELLHPLGLD----------------   63 (134)
T ss_dssp             CEEEEEEEEEECSCHHHHHHHHHHTSCCEECCCEEEGG--GTEEEEEEECSSSEEEEEEECSTT----------------
T ss_pred             ccceeeeEEEEeCCHHHHHHHHHHhcCCEEeEeeecCC--CCEEEEEEecCCEEEEEEecCCCC----------------
Confidence            36899999999999999999999999999875432111  124567778888888887654321                


Q ss_pred             CChhHHhHHHHhcC-CceeEEEEEecCHHHHHHHHHHcCCCCCCCC
Q 013898          109 FDHAACRSFAASHG-LAARSIAVEVEDADVAFNTSVAHGAKPSSPP  153 (434)
Q Consensus       109 ~~~~~~~~~l~~hG-~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p  153 (434)
                         +....++.+++ .|+.||+|.|+|+++++++++++|++++.+|
T Consensus        64 ---~~~~~~~~~~~~~g~~hi~~~v~d~~~~~~~l~~~G~~~~~~~  106 (134)
T 3rmu_A           64 ---SPIAGFLQKNKAGGMHHICIEVDNINAAVMDLKKKKIRSLSEE  106 (134)
T ss_dssp             ---CTTHHHHHHCTTCEEEEEEEEESCHHHHHHHHHHTTCTTBCCC
T ss_pred             ---chhhhhhhccCCCCceEEEEEcCCHHHHHHHHHHcCCcccCCC
Confidence               12345566654 5899999999999999999999999987664

>3l7t_A SMU.1112C, putative uncharacterized protein; metal binding protein; 1.80A {Streptococcus mutans}

Probab=99.42  E-value=3.8e-12  Score=106.91  Aligned_cols=132  Identities=14%  Similarity=0.126  Sum_probs=85.4

Q ss_pred             CCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCC
Q 013898           28 FRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLP  107 (434)
Q Consensus        28 ~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~  107 (434)
                      |.+++++||.|.|+|++++++||++.|||++..+...+.+  ......++.|+..+.|..+...+    |.  ....+. 
T Consensus         1 M~i~~i~hv~l~v~D~~~a~~FY~~~lG~~~~~~~~~~~~--~~~~~~~~~~~~~l~l~~~~~~~----~~--~~~~~~-   71 (134)
T 3l7t_A            1 MKLKAVHHVALIVSDYDKSYEFYVNQLGFEVIRENHRPKR--HDYKLDLKCGDIELEIFGNKLTD----SN--YCAPPE-   71 (134)
T ss_dssp             -CCCEEEEEEEECSCHHHHHHHHHHTSCCEEEEEEEETTT--TEEEEEEEETTEEEEEEECCTTS----TT--CCCCCC-
T ss_pred             CceeeEeEEEEEeCCHHHHHHHHHHhcCCEEEEEeecCCC--cceEEEEecCCeEEEEEeccccc----cc--ccCCcc-
Confidence            3578999999999999999999999999999876532221  12356678899888887632110    00  000000 


Q ss_pred             CCChhHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEE
Q 013898          108 TFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRY  175 (434)
Q Consensus       108 ~~~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~f  175 (434)
                             ......++.|+.|++|.|+|+++++++++++|+++...|...........++.+.|..+.|
T Consensus        72 -------~~~~~~~~~g~~~~~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~iel  132 (134)
T 3l7t_A           72 -------RISWPREACGLRHLAFYVEDVEASRQELIALGIRVEEVRYDDYTGKKMAFFFDPDGLPLEL  132 (134)
T ss_dssp             -------CCCSSSCCSEEEEEEEECSCHHHHHHHHHHHTCCCCCCEECTTSCCEEEEEECTTCCEEEE
T ss_pred             -------ccCCCCCCCCeEEEEEEECCHHHHHHHHHhCCCcccceeccCCCceEEEEEECCCCCEEEE
Confidence                   0000114568999999999999999999999999876554432222333344444444444

>3l7t_A SMU.1112C, putative uncharacterized protein; metal binding protein; 1.80A {Streptococcus mutans}

Probab=99.36  E-value=3.2e-12  Score=107.36  Aligned_cols=129  Identities=16%  Similarity=0.146  Sum_probs=84.1

Q ss_pred             ceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCC---CCCCchHHH
Q 013898          205 GIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFG---TKRKSQIQT  281 (434)
Q Consensus       205 ~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g---~~~~s~i~~  281 (434)
                      .+++|+||++.|+|++++++||+++|||+........+     .+.....+..++  ..+.|......   .........
T Consensus         2 ~i~~i~hv~l~v~D~~~a~~FY~~~lG~~~~~~~~~~~-----~~~~~~~~~~~~--~~l~l~~~~~~~~~~~~~~~~~~   74 (134)
T 3l7t_A            2 KLKAVHHVALIVSDYDKSYEFYVNQLGFEVIRENHRPK-----RHDYKLDLKCGD--IELEIFGNKLTDSNYCAPPERIS   74 (134)
T ss_dssp             CCCEEEEEEEECSCHHHHHHHHHHTSCCEEEEEEEETT-----TTEEEEEEEETT--EEEEEEECCTTSTTCCCCCCCCC
T ss_pred             ceeeEeEEEEEeCCHHHHHHHHHHhcCCEEEEEeecCC-----CcceEEEEecCC--eEEEEEecccccccccCCccccC
Confidence            47899999999999999999999999999887643211     112334444433  45666551000   000000000


Q ss_pred             HHhhcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCce
Q 013898          282 YLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGT  361 (434)
Q Consensus       282 fl~~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~  361 (434)
                      + .. .+.|++|+||.|+|+++++++|+++    |++++..| ...       .            .....++-+|++|+
T Consensus        75 ~-~~-~~~g~~~~~~~v~d~~~~~~~l~~~----G~~~~~~~-~~~-------~------------~g~~~~~~~DPdG~  128 (134)
T 3l7t_A           75 W-PR-EACGLRHLAFYVEDVEASRQELIAL----GIRVEEVR-YDD-------Y------------TGKKMAFFFDPDGL  128 (134)
T ss_dssp             S-SS-CCSEEEEEEEECSCHHHHHHHHHHH----TCCCCCCE-ECT-------T------------SCCEEEEEECTTCC
T ss_pred             C-CC-CCCCeEEEEEEECCHHHHHHHHHhC----CCccccee-ccC-------C------------CceEEEEEECCCCC
Confidence            0 11 4678999999999999999999999    99987543 220       0            01235577788898


Q ss_pred             EEEEE
Q 013898          362 LLQIF  366 (434)
Q Consensus       362 llqif  366 (434)
                      +++++
T Consensus       129 ~iel~  133 (134)
T 3l7t_A          129 PLELH  133 (134)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            88875

>4g6x_A Glyoxalase/bleomycin resistance protein/dioxygena; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.73A {Catenulispora acidiphila}

Probab=99.33  E-value=2.9e-12  Score=112.60  Aligned_cols=103  Identities=15%  Similarity=0.167  Sum_probs=68.8

Q ss_pred             ceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCc-eEEEecccCCCCCCCchHHHHH
Q 013898          205 GIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEM-VLLPMNEPVFGTKRKSQIQTYL  283 (434)
Q Consensus       205 ~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~-v~i~L~e~~~g~~~~s~i~~fl  283 (434)
                      ..++|+|++|.|.|++++++||+++|||++.......       +.+...+..+.+. ..+.+..+.    .........
T Consensus        23 ~~Mri~~v~I~V~Dle~A~~FY~dvLGf~v~~d~~~~-------~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~   91 (155)
T 4g6x_A           23 NAMRIHLTNVFVDDQAKAESFYTGKLGFLVKADVPVG-------ADRWLTVVSPEAPDGTQLLLEPS----SHAAVTPFK   91 (155)
T ss_dssp             CCCCCCEEEEEESCHHHHHHHHHHTTCCEEEEEEEET-------TEEEEEEECTTCTTSCEEEEEEC----CSTTHHHHH
T ss_pred             CceEEEEEEEEeCCHHHHHHHHHHHhCCEEEEeecCC-------CceEEEEeccCCCcceEEEeccC----CCccccccc
Confidence            3458999999999999999999999999987654311       1223333333221 222222221    111222222


Q ss_pred             hhcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccC
Q 013898          284 EHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPS  322 (434)
Q Consensus       284 ~~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~  322 (434)
                      ....+.|+.|++|.|+||++++++|+++    |++++..
T Consensus        92 ~~~~~~g~~~l~f~VdDvda~~~~l~~~----Gv~~~~~  126 (155)
T 4g6x_A           92 EALVADGIPAASFAVDDIAAEYERLSAL----GVRFTQE  126 (155)
T ss_dssp             HHHHHTTCCSEEEEESCHHHHHHHHHHT----TCCEEEE
T ss_pred             cccccCCceEEEeeechhhhhhhHHhcC----CcEEeeC
Confidence            2224578999999999999999999999    9999864

>1ss4_A Glyoxalase family protein; structural genomics, PSI, prote structure initiative, midwest center for structural genomic unknown function; HET: CIT GSH; 1.84A {Bacillus cereus} SCOP: d.32.1.6

Probab=99.31  E-value=1e-11  Score=107.32  Aligned_cols=112  Identities=14%  Similarity=0.169  Sum_probs=74.8

Q ss_pred             cceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccC------cccccCceEEEEEcCCCceEEEecccCCCCCCCc
Q 013898          204 YGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDV------GTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKS  277 (434)
Q Consensus       204 ~~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~------~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s  277 (434)
                      ..+.+|+|+++.|+|++++++||++ |||+..........      +....+....++..+++...|.|.++....... 
T Consensus         7 ~~~~~i~hv~l~v~D~~~a~~FY~~-lG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~l~l~~~~~~~~~~-   84 (153)
T 1ss4_A            7 NKLLRMDNVSIVVESLDNAISFFEE-IGLNLEGRANVEGEWAGRVTGLGSQCVEIAMMVTPDGHSRIELSRFLTPPTIA-   84 (153)
T ss_dssp             CCEEEEEEEEEECSCHHHHHHHHHH-HTCEEEEEEEECSHHHHHHHSCCSCEEEEEEEECTTSSCEEEEEEEEESCCCC-
T ss_pred             ccccceeeEEEEeCCHHHHHHHHHH-CCCEEEeeccCCcchhheeeCCCCCcEEEEEEECCCCCcEEEEEEecCCCCcc-
Confidence            3588999999999999999999999 99998754321000      000112344555655555677776542100000 


Q ss_pred             hHHHHHhhcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCC
Q 013898          278 QIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSP  323 (434)
Q Consensus       278 ~i~~fl~~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~p  323 (434)
                       ...+ ....+.|++||||.|+|+++++++|+++    |++++..|
T Consensus        85 -~~~~-~~~~~~g~~hl~~~v~d~~~~~~~l~~~----G~~~~~~~  124 (153)
T 1ss4_A           85 -DHRT-APVNALGYLRVMFTVEDIDEMVSRLTKH----GAELVGEV  124 (153)
T ss_dssp             -BCTT-CCSSSBEEEEEEEEESCHHHHHHHHHHT----TCEESSCC
T ss_pred             -cccC-CCCCCCceEEEEEEeCCHHHHHHHHHHC----CCeecCCC
Confidence             0011 1224678999999999999999999999    99998643

>3ey7_A Biphenyl-2,3-DIOL 1,2-dioxygenase III-related protein; integron cassette protein mobIle metagenome structural genomics, oxidoreductase, PSI-2; HET: MSE; 1.60A {Vibrio cholerae} PDB: 3ey8_A*

Probab=99.31  E-value=4.2e-11  Score=100.75  Aligned_cols=122  Identities=12%  Similarity=0.104  Sum_probs=88.3

Q ss_pred             CCCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCC
Q 013898           27 RFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASL  106 (434)
Q Consensus        27 ~~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~  106 (434)
                      .+.+.+++||.|.|+|++++++||++.|||++..+..        ....++.|+..+.|........   +        .
T Consensus         5 ~m~~~~i~hi~l~v~D~~~a~~FY~~~lG~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~---~--------~   65 (133)
T 3ey7_A            5 LMKISHLDHLVLTVADIPTTTNFYEKVLGMKAVSFGA--------GRIALEFGHQKINLHQLGNEFE---P--------K   65 (133)
T ss_dssp             CCCCCEEEEEEEEESCHHHHHHHHHHHHCCEEEEETT--------TEEEEEETTEEEEEEETTSCCS---S--------C
T ss_pred             EeEecccCEEEEEECCHHHHHHHHHHccCceEEEecC--------CeEEEEcCCEEEEEEcCCCCcc---c--------c
Confidence            4568899999999999999999999999999987632        1345677888888876432210   0        0


Q ss_pred             CCCChhHHhHHHHhcCCceeEEEEEecC-HHHHHHHHHHcCCCCCCCCccccC---ceEEEEEEecCCeEEEEeec
Q 013898          107 PTFDHAACRSFAASHGLAARSIAVEVED-ADVAFNTSVAHGAKPSSPPVILDN---LAVIAEVQLYGDVVLRYVSY  178 (434)
Q Consensus       107 ~~~~~~~~~~~l~~hG~gv~~Iaf~V~D-vd~a~~ra~~~Ga~~~~~p~~~~~---~~~~~~i~~~Gg~~~~fvd~  178 (434)
                                 ....+.+..|++|.|+| +++++++++++|+++..+|....+   ......++++.|..+.++++
T Consensus        66 -----------~~~~~~~~~~~~~~v~dd~~~~~~~l~~~G~~~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~~  130 (133)
T 3ey7_A           66 -----------AQNVRVGSADLCFITDTVLSDAMKHVEDQGVTIMEGPVKRTGAQGAITSFYFRDPDGNLIEVSTY  130 (133)
T ss_dssp             -----------CTTCCTTCCEEEEECSSCHHHHHHHHHHTTCCCCEEEEEEEETTEEEEEEEEECTTCCEEEEEES
T ss_pred             -----------CCCCCCCccEEEEEeCcHHHHHHHHHHHCCCccccCCccccCCCCCeEEEEEECCCCCEEEEEec
Confidence                       01234577899999997 999999999999998766643211   12445566677777777664

>3isq_A 4-hydroxyphenylpyruvate dioxygenase; tyrosine metabolism, DIS mutation, iron, mental retardation, metal-binding, oxidored phenylalanine catabolism; 1.75A {Homo sapiens} PDB: 1sqi_A*

Probab=99.30  E-value=1.7e-11  Score=124.53  Aligned_cols=113  Identities=14%  Similarity=0.163  Sum_probs=90.9

Q ss_pred             CCCcceEEEEEEEeCC--HHHHHHHHHHhcCCcEEEEec---CCCCceeEEEEEEEe--CCEEEEEEcCCCCCCCccccc
Q 013898           27 RFRVNRFHHVEFWCTD--ATNTARRFSWGLGMPIVAKSD---LSTGNTVHASYLLRS--GDLRFVFTAPYSPSISDAADA   99 (434)
Q Consensus        27 ~~~i~~l~HI~~~V~d--a~~a~~fy~~~lGf~~v~~~~---~~~g~~~~~~~~l~~--G~i~~vl~~p~~~~~~~~~~~   99 (434)
                      ...+.+||||.++|++  +++|++||+++|||+......   ..+......+.++..  |.+.|.|++|.....      
T Consensus       168 ~~~l~~IDHv~i~V~~~~l~~a~~fY~~~lGf~~~~~~d~~~i~~~~~gl~s~~~~~~~g~v~i~L~ep~~~~~------  241 (393)
T 3isq_A          168 KCSLEMIDHIVGNQPDQEMVSASEWYLKNLQFHRFWSVDDTQVHTEYSSLRSIVVANYEESIKMPINEPAPGKK------  241 (393)
T ss_dssp             CCCEEEEEEEEEECCTTCHHHHHHHHHHHHCCEEEEEECTTTSBCSSCEEEEEEEECTTSSCEEEEEEEECCSB------
T ss_pred             CCCeeEEeEEEEecCccHHHHHHHHHHHHhCCEEeccccccccccCCCcEEEEEEECCCCCEEEEEecCCCCCC------
Confidence            3468999999999998  999999999999999887643   222222355666654  679999999864210      


Q ss_pred             CCCCCCCCCCChhHHhHHHHhc-CCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccc
Q 013898          100 GNSSASLPTFDHAACRSFAASH-GLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVIL  156 (434)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~l~~h-G~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~  156 (434)
                                 .|++++|+++| |+|+.||||.|+|+.+++++++++|++.+..|...
T Consensus       242 -----------~s~I~~fL~~~~G~Gi~HiA~~~dDi~~~~~~l~~~Gv~~l~~P~~Y  288 (393)
T 3isq_A          242 -----------KSQIQEYVDYNGGAGVQHIALKTEDIITAIRHLRERGLEFLSVPSTY  288 (393)
T ss_dssp             -----------CCHHHHHHHHHTSSEEEEEEEEESCHHHHHHHHHHTTCCBCCCCHHH
T ss_pred             -----------CCHHHHHHHHcCCCCcceEEEEcCCHHHHHHHHHHcCCccCCCCccH
Confidence                       26899999998 78999999999999999999999999988877543

>4hc5_A Glyoxalase/bleomycin resistance protein/dioxygena; MCSG, GEBA genomes, structural genomics, midwest center for structural genomics; HET: MSE GOL; 1.45A {Sphaerobacter thermophilus}

Probab=99.29  E-value=6.8e-11  Score=99.48  Aligned_cols=122  Identities=13%  Similarity=0.095  Sum_probs=82.6

Q ss_pred             CCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEe--CCEEEEEEcCCCCCCCcccccCCCCCC
Q 013898           28 FRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRS--GDLRFVFTAPYSPSISDAADAGNSSAS  105 (434)
Q Consensus        28 ~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~--G~i~~vl~~p~~~~~~~~~~~~~~~~~  105 (434)
                      +.+.+++||.|.|+|++++++||+++|||++......+.+   .....+..  +...+.+..+....             
T Consensus         9 ~m~~~i~hv~l~v~D~~~a~~FY~~~lG~~~~~~~~~~~~---~~~~~~~~~~~~~~l~l~~~~~~~-------------   72 (133)
T 4hc5_A            9 LMIAYVHSATIIVSDQEKALDFYVNTLGFEKVFDNQLDPN---MRFVTVVPPGAQTQVALGLPSWYE-------------   72 (133)
T ss_dssp             CSCCEEEEEEEECSCHHHHHHHHHHTTCCEEEEEEEEETT---EEEEEEECTTCSCEEEEECGGGCS-------------
T ss_pred             ccccceeEEEEEECCHHHHHHHHHhCcCCcEeeecccCCC---ceEEEEECCCCceEEEEecCcccc-------------
Confidence            4588999999999999999999999999999876431111   12233333  45677776532100             


Q ss_pred             CCCCChhHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEee
Q 013898          106 LPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVS  177 (434)
Q Consensus       106 ~~~~~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd  177 (434)
                                  ....+.+..+++|.|+|+++++++++++|+++..+|...........++++.|..+.|++
T Consensus        73 ------------~~~~~~~~~~~~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~G~~~el~e  132 (133)
T 4hc5_A           73 ------------DGRKPGGYTGISLITRDIDEAYKTLTERGVTFTKPPEMMPWGQRATWFSDPDGNQFFLVE  132 (133)
T ss_dssp             ------------SCCCSCEEEEEEEEESCHHHHHHHHHHTTCEESSSCEECTTSCEEEEEECTTCEEEEEEE
T ss_pred             ------------cccCCCCeEEEEEEeCCHHHHHHHHHHCCCEeecCCCcCCCCCEEEEEECCCCCEEEEEe
Confidence                        001234678999999999999999999999987776544222234445555555555543

>2p25_A Glyoxalase family protein; structural genomics, MCSG, PSI-2, protein struct initiative, midwest center for structural genomics, oxidore; 1.70A {Enterococcus faecalis}

Probab=99.29  E-value=5.8e-11  Score=98.77  Aligned_cols=103  Identities=15%  Similarity=0.162  Sum_probs=72.9

Q ss_pred             CCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCC
Q 013898           28 FRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLP  107 (434)
Q Consensus        28 ~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~  107 (434)
                      |++.+++||.|.|+|++++++||++.|||++......+.+  ......++.++..+.|.....+..          .+  
T Consensus         1 M~~~~i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~--~~~~~~~~~~~~~l~l~~~~~~~~----------~~--   66 (126)
T 2p25_A            1 MFFKEIHHVAINASNYQATKNFYVEKLGFEVLRENHRPEK--NDIKLDLKLGSQELEIFISDQFPA----------RP--   66 (126)
T ss_dssp             CTTSCCCCEEEEESCHHHHHHHHTTTTCCEEEEEEEEGGG--TEEEEEEEETTEEEEEEECTTCCC----------CC--
T ss_pred             CcccccceEEEEeCCHHHHHHHHHHhcCCEEEeeccCCCC--cceEEEEecCCeEEEEEeccCCCC----------CC--
Confidence            3578999999999999999999999999998765321111  112234666776777775322110          00  


Q ss_pred             CCChhHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCc
Q 013898          108 TFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPV  154 (434)
Q Consensus       108 ~~~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~  154 (434)
                          .      ...+.|..|++|.|+|+++++++++++|+++...|.
T Consensus        67 ----~------~~~~~g~~~~~~~v~d~~~~~~~l~~~G~~~~~~~~  103 (126)
T 2p25_A           67 ----S------YPEALGLRHLAFKVEHIEEVIAFLNEQGIETEPLRV  103 (126)
T ss_dssp             ----C------SSCCSSCCCEEEECSCHHHHHHHHHHTTCCCCCCEE
T ss_pred             ----C------CCCCccceEEEEEeCCHHHHHHHHHHcCCccccccc
Confidence                0      013457789999999999999999999999765554

>3e5d_A Putative glyoxalase I; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 2.70A {Listeria monocytogenes str}

Probab=99.29  E-value=2.8e-11  Score=101.20  Aligned_cols=123  Identities=18%  Similarity=0.227  Sum_probs=86.1

Q ss_pred             eeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhc
Q 013898          207 RRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHN  286 (434)
Q Consensus       207 ~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~  286 (434)
                      ++|+|+++.|+|++++++||+++|||+........+     .+....++..++ ...|.|......  ...      ...
T Consensus         2 m~i~hv~l~v~D~~~a~~FY~~~lG~~~~~~~~~~~-----~~~~~~~~~~~~-~~~l~l~~~~~~--~~~------~~~   67 (127)
T 3e5d_A            2 MKIEHVALWTTNLEQMKQFYVTYFGATANDLYENKT-----KGFNSYFLSFED-GARLEIMSRTDV--TGK------TTG   67 (127)
T ss_dssp             CCCCEEEEECSSHHHHHHHHHHHHCCEECCCEEEGG-----GTEEEEEEECSS-SCEEEEEEETTC--CCC------CCS
T ss_pred             CEEEEEEEEECCHHHHHHHHHHhcCCeeecccccCC-----CCccEEEEEcCC-CcEEEEEecCCC--CCC------CCc
Confidence            468999999999999999999999999876543111     124455555543 467777654311  110      011


Q ss_pred             CCCCceEEEEEeCC---HHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEE
Q 013898          287 EGAGVQHLALVSED---IFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLL  363 (434)
Q Consensus       287 ~G~GvqHIAf~vdD---I~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~ll  363 (434)
                      .+.|++|+||.|+|   +++++++|+++    |++++..| ...        +           .....++-+|++|+++
T Consensus        68 ~~~g~~hi~~~v~d~~~v~~~~~~l~~~----G~~~~~~~-~~~--------~-----------~g~~~~~~~DPdG~~i  123 (127)
T 3e5d_A           68 ENLGWAHIAISTGTKEAVDELTEKLRQD----GFAIAGEP-RMT--------G-----------DGYYESVVLDPEGNRI  123 (127)
T ss_dssp             SCSSCCCEEEECSSHHHHHHHHHHHHHT----TCCEEEEE-EEC--------T-----------TSCEEEEEECTTSCEE
T ss_pred             CCCceEEEEEEcCCHHHHHHHHHHHHHc----CCeEecCc-ccC--------C-----------CCcEEEEEECCCCCEE
Confidence            46789999999999   88999999999    99988643 321        0           0122457789999999


Q ss_pred             EEEc
Q 013898          364 QIFT  367 (434)
Q Consensus       364 qifT  367 (434)
                      ++++
T Consensus       124 el~~  127 (127)
T 3e5d_A          124 EITW  127 (127)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            9874

>1ss4_A Glyoxalase family protein; structural genomics, PSI, prote structure initiative, midwest center for structural genomic unknown function; HET: CIT GSH; 1.84A {Bacillus cereus} SCOP: d.32.1.6

Probab=99.28  E-value=3.6e-11  Score=103.88  Aligned_cols=132  Identities=15%  Similarity=0.208  Sum_probs=87.4

Q ss_pred             CCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCC---------CceeEEEEEEEe--CCEEEEEEcCCCCCCCcc
Q 013898           28 FRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLST---------GNTVHASYLLRS--GDLRFVFTAPYSPSISDA   96 (434)
Q Consensus        28 ~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~---------g~~~~~~~~l~~--G~i~~vl~~p~~~~~~~~   96 (434)
                      +.+.+++||.+.|+|++++++||++ |||++..+...+.         .........++.  |+..|.|..+..+..   
T Consensus         7 ~~~~~i~hv~l~v~D~~~a~~FY~~-lG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~l~l~~~~~~~~---   82 (153)
T 1ss4_A            7 NKLLRMDNVSIVVESLDNAISFFEE-IGLNLEGRANVEGEWAGRVTGLGSQCVEIAMMVTPDGHSRIELSRFLTPPT---   82 (153)
T ss_dssp             CCEEEEEEEEEECSCHHHHHHHHHH-HTCEEEEEEEECSHHHHHHHSCCSCEEEEEEEECTTSSCEEEEEEEEESCC---
T ss_pred             ccccceeeEEEEeCCHHHHHHHHHH-CCCEEEeeccCCcchhheeeCCCCCcEEEEEEECCCCCcEEEEEEecCCCC---
Confidence            3588999999999999999999999 9999886532100         001234566665  336776665322110   


Q ss_pred             cccCCCCCCCCCCChhHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEe
Q 013898           97 ADAGNSSASLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYV  176 (434)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fv  176 (434)
                             ..        ...+...++.|+.||+|.|+|+++++++++++|++++.+|...........++++.|..++|+
T Consensus        83 -------~~--------~~~~~~~~~~g~~hl~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~iel~  147 (153)
T 1ss4_A           83 -------IA--------DHRTAPVNALGYLRVMFTVEDIDEMVSRLTKHGAELVGEVVQYENSYRLCYIRGVEGILIGLA  147 (153)
T ss_dssp             -------CC--------BCTTCCSSSBEEEEEEEEESCHHHHHHHHHHTTCEESSCCEEETTTEEEEEEECGGGCEEEEE
T ss_pred             -------cc--------cccCCCCCCCceEEEEEEeCCHHHHHHHHHHCCCeecCCCcccCCceEEEEEECCCCCEEEEE
Confidence                   00        001112345688899999999999999999999998777644323334455566666666666


Q ss_pred             ec
Q 013898          177 SY  178 (434)
Q Consensus       177 d~  178 (434)
                      ++
T Consensus       148 ~~  149 (153)
T 1ss4_A          148 EE  149 (153)
T ss_dssp             EE
T ss_pred             ec
Confidence            53

>2p25_A Glyoxalase family protein; structural genomics, MCSG, PSI-2, protein struct initiative, midwest center for structural genomics, oxidore; 1.70A {Enterococcus faecalis}

Probab=99.28  E-value=1.6e-11  Score=102.21  Aligned_cols=124  Identities=17%  Similarity=0.117  Sum_probs=82.7

Q ss_pred             ceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHh
Q 013898          205 GIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLE  284 (434)
Q Consensus       205 ~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~  284 (434)
                      .+.+++|+++.|+|++++++||+++|||+........+.     +....++..+++  .|.|..........       .
T Consensus         2 ~~~~i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~-----~~~~~~~~~~~~--~l~l~~~~~~~~~~-------~   67 (126)
T 2p25_A            2 FFKEIHHVAINASNYQATKNFYVEKLGFEVLRENHRPEK-----NDIKLDLKLGSQ--ELEIFISDQFPARP-------S   67 (126)
T ss_dssp             TTSCCCCEEEEESCHHHHHHHHTTTTCCEEEEEEEEGGG-----TEEEEEEEETTE--EEEEEECTTCCCCC-------C
T ss_pred             cccccceEEEEeCCHHHHHHHHHHhcCCEEEeeccCCCC-----cceEEEEecCCe--EEEEEeccCCCCCC-------C
Confidence            467899999999999999999999999998764321111     122233444443  56665432100011       0


Q ss_pred             hcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEE
Q 013898          285 HNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQ  364 (434)
Q Consensus       285 ~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llq  364 (434)
                      ...+.|++|+||.|+|+++++++|+++    |++++..| ...        .           .....++-+|++|++++
T Consensus        68 ~~~~~g~~~~~~~v~d~~~~~~~l~~~----G~~~~~~~-~~~--------~-----------~g~~~~~~~DPdG~~ie  123 (126)
T 2p25_A           68 YPEALGLRHLAFKVEHIEEVIAFLNEQ----GIETEPLR-VDD--------F-----------TGKKMTFFFDPDGLPLE  123 (126)
T ss_dssp             SSCCSSCCCEEEECSCHHHHHHHHHHT----TCCCCCCE-ECT--------T-----------TCCEEEEEECTTCCEEE
T ss_pred             CCCCccceEEEEEeCCHHHHHHHHHHc----CCcccccc-ccC--------C-----------CCcEEEEEECCCCCEEE
Confidence            124578999999999999999999999    99987532 210        0           01234566888899888


Q ss_pred             EE
Q 013898          365 IF  366 (434)
Q Consensus       365 if  366 (434)
                      ++
T Consensus       124 l~  125 (126)
T 2p25_A          124 LH  125 (126)
T ss_dssp             EE
T ss_pred             ee
Confidence            76

>4hc5_A Glyoxalase/bleomycin resistance protein/dioxygena; MCSG, GEBA genomes, structural genomics, midwest center for structural genomics; HET: MSE GOL; 1.45A {Sphaerobacter thermophilus}

Probab=99.27  E-value=9.6e-11  Score=98.54  Aligned_cols=124  Identities=15%  Similarity=0.201  Sum_probs=86.9

Q ss_pred             cceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHH
Q 013898          204 YGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYL  283 (434)
Q Consensus       204 ~~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl  283 (434)
                      ..+.+|+|+++.|+|++++++||+++|||+........+      +..-..+..+.+.+.|.|..+...  ..       
T Consensus         9 ~m~~~i~hv~l~v~D~~~a~~FY~~~lG~~~~~~~~~~~------~~~~~~~~~~~~~~~l~l~~~~~~--~~-------   73 (133)
T 4hc5_A            9 LMIAYVHSATIIVSDQEKALDFYVNTLGFEKVFDNQLDP------NMRFVTVVPPGAQTQVALGLPSWY--ED-------   73 (133)
T ss_dssp             CSCCEEEEEEEECSCHHHHHHHHHHTTCCEEEEEEEEET------TEEEEEEECTTCSCEEEEECGGGC--SS-------
T ss_pred             ccccceeEEEEEECCHHHHHHHHHhCcCCcEeeecccCC------CceEEEEECCCCceEEEEecCccc--cc-------
Confidence            457899999999999999999999999999887543111      122233444455677887765310  00       


Q ss_pred             hhcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEE
Q 013898          284 EHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLL  363 (434)
Q Consensus       284 ~~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~ll  363 (434)
                       .....+.+|++|.|+|+++++++|+++    |++++.. |...        +           .....++-+|++|+++
T Consensus        74 -~~~~~~~~~~~~~v~d~~~~~~~l~~~----G~~~~~~-~~~~--------~-----------~g~~~~~~~DP~G~~~  128 (133)
T 4hc5_A           74 -GRKPGGYTGISLITRDIDEAYKTLTER----GVTFTKP-PEMM--------P-----------WGQRATWFSDPDGNQF  128 (133)
T ss_dssp             -CCCSCEEEEEEEEESCHHHHHHHHHHT----TCEESSS-CEEC--------T-----------TSCEEEEEECTTCEEE
T ss_pred             -ccCCCCeEEEEEEeCCHHHHHHHHHHC----CCEeecC-CCcC--------C-----------CCCEEEEEECCCCCEE
Confidence             112356899999999999999999999    9999864 3321        0           0113556788889888


Q ss_pred             EEEc
Q 013898          364 QIFT  367 (434)
Q Consensus       364 qifT  367 (434)
                      ++..
T Consensus       129 el~e  132 (133)
T 4hc5_A          129 FLVE  132 (133)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            8764

>1f9z_A Glyoxalase I; beta-alpha-beta-BETA-beta motif, protein-NI(II) complex, homodimer, lyase; 1.50A {Escherichia coli} SCOP: d.32.1.1 PDB: 1fa5_A 1fa6_A 1fa7_A 1fa8_A

Probab=99.27  E-value=7.7e-11  Score=99.54  Aligned_cols=124  Identities=13%  Similarity=0.173  Sum_probs=83.6

Q ss_pred             eeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCC--CceEEEecccCCCCCCCchHHHHHhh
Q 013898          208 RLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANND--EMVLLPMNEPVFGTKRKSQIQTYLEH  285 (434)
Q Consensus       208 ~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~--g~v~i~L~e~~~g~~~~s~i~~fl~~  285 (434)
                      +|+|+++.|+|++++++||+++|||+........+  .   +....++..++  ....|.|..+..   ...       .
T Consensus         2 ~l~hv~l~v~D~~~a~~FY~~~lG~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~l~l~~~~~---~~~-------~   66 (135)
T 1f9z_A            2 RLLHTMLRVGDLQRSIDFYTKVLGMKLLRTSENPE--Y---KYSLAFVGYGPETEEAVIELTYNWG---VDK-------Y   66 (135)
T ss_dssp             CEEEEEEECSCHHHHHHHHHHTTCCEEEEEEEETT--T---TEEEEEEESSCTTTSCEEEEEEETT---CCC-------C
T ss_pred             cceEEEEEeCCHHHHHHHHHhccCcEEEEecccCC--C---ceEEEEEecCCCCCCcEEEEEEcCC---CCc-------c
Confidence            68999999999999999999999999876543111  1   12233444433  246677765431   110       1


Q ss_pred             cCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEEE
Q 013898          286 NEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQI  365 (434)
Q Consensus       286 ~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llqi  365 (434)
                      ..+.|++|++|.|+|+++++++|+++    |++++..| ....      .+            ....++-+|++|+++++
T Consensus        67 ~~~~~~~~~~~~v~d~~~~~~~l~~~----G~~~~~~~-~~~~------~g------------~~~~~~~~DPdG~~iel  123 (135)
T 1f9z_A           67 ELGTAYGHIALSVDNAAEACEKIRQN----GGNVTREA-GPVK------GG------------TTVIAFVEDPDGYKIEL  123 (135)
T ss_dssp             CCCSSEEEEEEECSCHHHHHHHHHHT----TCEEEEEE-EECT------TS------------CCEEEEEECTTSCEEEE
T ss_pred             cCCCCccEEEEEeCCHHHHHHHHHHC----CCEEecCC-ccCC------CC------------ceeEEEEECCCCCEEEE
Confidence            24568999999999999999999999    99998642 3210      01            01245667888988888


Q ss_pred             Eccc
Q 013898          366 FTKP  369 (434)
Q Consensus       366 fT~~  369 (434)
                      ++.+
T Consensus       124 ~~~~  127 (135)
T 1f9z_A          124 IEEK  127 (135)
T ss_dssp             EEC-
T ss_pred             EecC
Confidence            7754

>2c21_A Trypanothione-dependent glyoxalase I; lyase, glutathionylspermidine, methylglyoxal, detoxification; 2.0A {Leishmania major} SCOP: d.32.1.1

Probab=99.26  E-value=9.9e-11  Score=100.94  Aligned_cols=122  Identities=16%  Similarity=0.187  Sum_probs=84.4

Q ss_pred             cceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCC--CceEEEecccCCCCCCCchHHH
Q 013898          204 YGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANND--EMVLLPMNEPVFGTKRKSQIQT  281 (434)
Q Consensus       204 ~~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~--g~v~i~L~e~~~g~~~~s~i~~  281 (434)
                      +.+.+|+|+++.|+|++++++||+++|||+........+     .+....++..++  +...|.|.++..   ...    
T Consensus         4 m~~~~i~hv~l~v~D~~~a~~FY~~~lG~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~l~l~~~~~---~~~----   71 (144)
T 2c21_A            4 MPSRRMLHTMIRVGDLDRSIKFYTERLGMKVLRKWDVPE-----DKYTLVFLGYGPEMSSTVLELTYNYG---VTS----   71 (144)
T ss_dssp             --CCEEEEEEEECSCHHHHHHHHHHTTCCEEEEEEEEGG-----GTEEEEEEESSCTTTSCEEEEEEETT---CCC----
T ss_pred             CccceeEEEEEEeCCHHHHHHHHHhcCCCEEEEeeecCC-----CCeEEEEEEcCCCCCceEEEEEecCC---CCC----
Confidence            457899999999999999999999999999876543111     113334455443  246777776531   111    


Q ss_pred             HHhhcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCce
Q 013898          282 YLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGT  361 (434)
Q Consensus       282 fl~~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~  361 (434)
                         ...+.|++||||.|+|+++++++|+++    |++++.  +          .+            ...+.+-+|++|+
T Consensus        72 ---~~~~~~~~h~~f~v~d~~~~~~~l~~~----G~~~~~--~----------~g------------~~~~~~~~DPdG~  120 (144)
T 2c21_A           72 ---YKHDEAYGHIAIGVEDVKELVADMRKH----DVPIDY--E----------DE------------SGFMAFVVDPDGY  120 (144)
T ss_dssp             ---CCCCSSEEEEEEEESCHHHHHHHHHHT----TCCEEE--E----------CS------------SSSEEEEECTTSC
T ss_pred             ---CCCCCCceEEEEEeCCHHHHHHHHHHC----CCEEec--c----------CC------------cEEEEEEECCCCC
Confidence               124578999999999999999999999    988774  2          11            0122266788898


Q ss_pred             EEEEEcc
Q 013898          362 LLQIFTK  368 (434)
Q Consensus       362 llqifT~  368 (434)
                      ++++++.
T Consensus       121 ~iel~~~  127 (144)
T 2c21_A          121 YIELLNE  127 (144)
T ss_dssp             EEEEEEH
T ss_pred             EEEEEEc
Confidence            8887764

>3vw9_A Lactoylglutathione lyase; glyoxalase, lyase-lyase inhibitor complex; HET: EPE HPJ; 1.47A {Homo sapiens} PDB: 1qip_A* 1fro_A* 1qin_A* 1bh5_A* 2za0_A*

Probab=99.25  E-value=7.2e-11  Score=106.41  Aligned_cols=133  Identities=14%  Similarity=0.243  Sum_probs=86.4

Q ss_pred             ceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCC-----------------ceEEEec
Q 013898          205 GIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDE-----------------MVLLPMN  267 (434)
Q Consensus       205 ~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g-----------------~v~i~L~  267 (434)
                      ...+|+|+++.|+|++++++||+++|||+.........     .+.....+..+++                 ...+.|.
T Consensus        31 ~~~~l~Hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~l~  105 (187)
T 3vw9_A           31 KDFLLQQTMLRVKDPKKSLDFYTRVLGMTLIQKCDFPI-----MKFSLYFLAYEDKNDIPKEKDEKIAWALSRKATLELT  105 (187)
T ss_dssp             TTCEEEEEEEECSCHHHHHHHHHHTTCCEEEEEEEETT-----TTEEEEEEESCCGGGSCSSHHHHHHHHTTCSSEEEEE
T ss_pred             ceeEEEEEEEEeCCHHHHHHHHHHhcCcEEeeccccCC-----CceeEEEecCCCcccccccccchhhhcccCCceEEEE
Confidence            35689999999999999999999999999887654211     1233344444332                 2455553


Q ss_pred             ccCCCCCCCchHHHHHh-hcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHH
Q 013898          268 EPVFGTKRKSQIQTYLE-HNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQ  346 (434)
Q Consensus       268 e~~~g~~~~s~i~~fl~-~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~  346 (434)
                      ....  ........+.. .....|++||||.|+||++++++|+++    |++++..| ..        ..          
T Consensus       106 ~~~~--~~~~~~~~~~~g~~~~~g~~hl~f~v~dv~~~~~~l~~~----G~~~~~~~-~~--------~~----------  160 (187)
T 3vw9_A          106 HNWG--TEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEEL----GVKFVKKP-DD--------GK----------  160 (187)
T ss_dssp             EETT--GGGCTTCCCCCSSSSSCBEEEEEEECSCHHHHHHHHHHT----TCCEEECT-TS--------SS----------
T ss_pred             EecC--CCCCCccccccCCCCCCceeEEEEEECCHHHHHHHHHHC----CCeEeeCC-cc--------CC----------
Confidence            3210  00000000100 112348999999999999999999999    99998753 22        00          


Q ss_pred             HHhcCeEEecCCCceEEEEEccc
Q 013898          347 CEELGVLVDRDDQGTLLQIFTKP  369 (434)
Q Consensus       347 l~~~~iL~D~d~~g~llqifT~~  369 (434)
                        -..++|-+|++|++++++...
T Consensus       161 --~~~~~~~~DPdG~~iel~~~~  181 (187)
T 3vw9_A          161 --MKGLAFIQDPDGYWIEILNPN  181 (187)
T ss_dssp             --STTCEEEECTTCCEEEEECGG
T ss_pred             --cceEEEEECCCCCEEEEEEcc
Confidence              112567789999998888754

>4g6x_A Glyoxalase/bleomycin resistance protein/dioxygena; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.73A {Catenulispora acidiphila}

Probab=99.23  E-value=2.8e-11  Score=106.27  Aligned_cols=126  Identities=15%  Similarity=0.151  Sum_probs=80.4

Q ss_pred             CcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEe--C-CEEEEEEcCCCCCCCcccccCCCCCC
Q 013898           29 RVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRS--G-DLRFVFTAPYSPSISDAADAGNSSAS  105 (434)
Q Consensus        29 ~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~--G-~i~~vl~~p~~~~~~~~~~~~~~~~~  105 (434)
                      ..++|+||.++|+|++++.+||+++|||+++...+...    .....+..  + ...+++..+....             
T Consensus        23 ~~Mri~~v~I~V~Dle~A~~FY~dvLGf~v~~d~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~-------------   85 (155)
T 4g6x_A           23 NAMRIHLTNVFVDDQAKAESFYTGKLGFLVKADVPVGA----DRWLTVVSPEAPDGTQLLLEPSSHA-------------   85 (155)
T ss_dssp             CCCCCCEEEEEESCHHHHHHHHHHTTCCEEEEEEEETT----EEEEEEECTTCTTSCEEEEEECCST-------------
T ss_pred             CceEEEEEEEEeCCHHHHHHHHHHHhCCEEEEeecCCC----ceEEEEeccCCCcceEEEeccCCCc-------------
Confidence            35789999999999999999999999999876543211    12222221  1 1222222222110             


Q ss_pred             CCCCChhHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEeec
Q 013898          106 LPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSY  178 (434)
Q Consensus       106 ~~~~~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd~  178 (434)
                            ..........+.|..+++|.|+|+++++++++++|+++..+|..... ...+.++.+.|..+.|++.
T Consensus        86 ------~~~~~~~~~~~~g~~~l~f~VdDvda~~~~l~~~Gv~~~~~p~~~~~-g~~~~f~DPdGn~iel~q~  151 (155)
T 4g6x_A           86 ------AVTPFKEALVADGIPAASFAVDDIAAEYERLSALGVRFTQEPTDMGP-VVTAILDDTCGNLIQLMQI  151 (155)
T ss_dssp             ------THHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEEEEECSS-CEEEEEECSSSCEEEEEEC
T ss_pred             ------cccccccccccCCceEEEeeechhhhhhhHHhcCCcEEeeCCEEcCC-eEEEEEECCCCCEEEEEEE
Confidence                  01111122234577889999999999999999999998777765422 2345566666666666663

>1f9z_A Glyoxalase I; beta-alpha-beta-BETA-beta motif, protein-NI(II) complex, homodimer, lyase; 1.50A {Escherichia coli} SCOP: d.32.1.1 PDB: 1fa5_A 1fa6_A 1fa7_A 1fa8_A

Probab=99.22  E-value=1.8e-10  Score=97.31  Aligned_cols=121  Identities=17%  Similarity=0.137  Sum_probs=83.9

Q ss_pred             ceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeC----CEEEEEEcCCCCCCCcccccCCCCCCC
Q 013898           31 NRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSG----DLRFVFTAPYSPSISDAADAGNSSASL  106 (434)
Q Consensus        31 ~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G----~i~~vl~~p~~~~~~~~~~~~~~~~~~  106 (434)
                      ++++||.|.|+|++++++||+++|||++......+.+  ......++.+    +..+.|..+....              
T Consensus         1 m~l~hv~l~v~D~~~a~~FY~~~lG~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~l~~~~~~~--------------   64 (135)
T 1f9z_A            1 MRLLHTMLRVGDLQRSIDFYTKVLGMKLLRTSENPEY--KYSLAFVGYGPETEEAVIELTYNWGVD--------------   64 (135)
T ss_dssp             CCEEEEEEECSCHHHHHHHHHHTTCCEEEEEEEETTT--TEEEEEEESSCTTTSCEEEEEEETTCC--------------
T ss_pred             CcceEEEEEeCCHHHHHHHHHhccCcEEEEecccCCC--ceEEEEEecCCCCCCcEEEEEEcCCCC--------------
Confidence            4799999999999999999999999998876432222  1234455555    3677776532211              


Q ss_pred             CCCChhHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCc-eEEEEEEecCCeEEEEeec
Q 013898          107 PTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNL-AVIAEVQLYGDVVLRYVSY  178 (434)
Q Consensus       107 ~~~~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~-~~~~~i~~~Gg~~~~fvd~  178 (434)
                           .      ..++.++.|++|.|+|+++++++++++|+++..+|...... .....++++.|..+.|+++
T Consensus        65 -----~------~~~~~~~~~~~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~~  126 (135)
T 1f9z_A           65 -----K------YELGTAYGHIALSVDNAAEACEKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEE  126 (135)
T ss_dssp             -----C------CCCCSSEEEEEEECSCHHHHHHHHHHTTCEEEEEEEECTTSCCEEEEEECTTSCEEEEEEC
T ss_pred             -----c------ccCCCCccEEEEEeCCHHHHHHHHHHCCCEEecCCccCCCCceeEEEEECCCCCEEEEEec
Confidence                 0      02445788999999999999999999999877665433222 2345566666667777663

>2rk0_A Glyoxalase/bleomycin resistance protein/dioxygena; 11002Z, glyoxylase, dioxygenas PSI-II; 2.04A {Frankia SP}

Probab=99.22  E-value=1.2e-10  Score=99.32  Aligned_cols=124  Identities=18%  Similarity=0.111  Sum_probs=85.2

Q ss_pred             CCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCC
Q 013898           28 FRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLP  107 (434)
Q Consensus        28 ~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~  107 (434)
                      |.+.+|+||.|.|+|++++++||++.|||++..+.....  .......++ |+..|.|..+.....   +          
T Consensus         1 M~i~~i~hv~l~v~Dl~~a~~FY~~~lG~~~~~~~~~~~--~~~~~~~~~-~~~~l~l~~~~~~~~---~----------   64 (136)
T 2rk0_A            1 MSLSGVSHVSLTVRDLDISCRWYTEILDWKELVRGRGDT--TSFAHGVLP-GGLSIVLREHDGGGT---D----------   64 (136)
T ss_dssp             -CEEEEEEEEEECSCHHHHHHHHHHHHCCEEEEEEECSS--EEEEEEECT-TSCEEEEEEETTCSS---S----------
T ss_pred             CCCCcccEEEEEeCCHHHHHHHHHHhcCCEEEeeccCCC--CceEEEEEc-CCCEEEEEeCCCCcc---c----------
Confidence            357899999999999999999999999999887643111  112334445 888888876432110   0          


Q ss_pred             CCChhHHhHHHHhcCCceeEEEEEe---cCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEeec
Q 013898          108 TFDHAACRSFAASHGLAARSIAVEV---EDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSY  178 (434)
Q Consensus       108 ~~~~~~~~~~l~~hG~gv~~Iaf~V---~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd~  178 (434)
                      .         ....+.|+.+++|.|   +|+++++++++++|+++. +|...... ....++++.|..+++++.
T Consensus        65 ~---------~~~~~~g~~h~~f~v~~~~d~~~~~~~l~~~G~~~~-~~~~~~~g-~~~~~~DPdG~~iel~~~  127 (136)
T 2rk0_A           65 L---------FDETRPGLDHLSFSVESMTDLDVLEERLAKAGAAFT-PTQELPFG-WILAFRDADNIALEAMLG  127 (136)
T ss_dssp             C---------CCTTSSEEEEEEEEESSHHHHHHHHHHHHHHTCCBC-CCEEETTE-EEEEEECTTCCEEEEEEE
T ss_pred             C---------CCCCCCCcceEEEEeCCHHHHHHHHHHHHHCCCccc-CccccCCc-eEEEEECCCCCEEEEEEc
Confidence            0         012446888999999   899999999999999865 44332122 344556666767777764

>2za0_A Glyoxalase I; lyase, lactoylglutathione lyase, methyl- gerfelin; HET: MGI; 1.70A {Mus musculus} PDB: 1qip_A* 1fro_A* 1qin_A* 1bh5_A*

Probab=99.21  E-value=8.8e-11  Score=105.76  Aligned_cols=135  Identities=14%  Similarity=0.233  Sum_probs=87.7

Q ss_pred             cceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCC-----------------CceEEEe
Q 013898          204 YGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANND-----------------EMVLLPM  266 (434)
Q Consensus       204 ~~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~-----------------g~v~i~L  266 (434)
                      ..+.+++|+++.|+|++++++||+++|||+.........     .+.....+..++                 +...|.|
T Consensus        27 ~~~~~i~hv~l~v~Dl~~a~~FY~~~LG~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~L  101 (184)
T 2za0_A           27 TKDFLLQQTMLRIKDPKKSLDFYTRVLGLTLLQKLDFPA-----MKFSLYFLAYEDKNDIPKDKSEKTAWTFSRKATLEL  101 (184)
T ss_dssp             GTTCEEEEEEEECSCHHHHHHHHHHTTCCEEEEEEEEGG-----GTEEEEEEESCCGGGSCSSHHHHHHHHTTSSSEEEE
T ss_pred             ccceeEEEEEEEeCCHHHHHHHHHHhcCCEEEEeccCCC-----CCceeEEecccccccCCcccchheeeecCCCceEEE
Confidence            357899999999999999999999999999876543111     112223333322                 2346666


Q ss_pred             cccCCCCCCCchHHHHHhhc-CCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHH
Q 013898          267 NEPVFGTKRKSQIQTYLEHN-EGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIK  345 (434)
Q Consensus       267 ~e~~~g~~~~s~i~~fl~~~-~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~  345 (434)
                      .+....  .......|...+ ...|++||||.|+||++++++|+++    |++++..| ...        .         
T Consensus       102 ~~~~~~--~~~~~~~~~~~~~~~~g~~hi~f~v~dvd~~~~~l~~~----G~~~~~~p-~~~--------~---------  157 (184)
T 2za0_A          102 THNWGT--EDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEEL----GVKFVKKP-DDG--------K---------  157 (184)
T ss_dssp             EEETTG--GGCTTCCCCCSSSSSCCEEEEEEECSCHHHHHHHHHHT----TCCEEECT-TSS--------S---------
T ss_pred             EecCCC--CCCcccccccCCCCCCCeeEEEEEeCCHHHHHHHHHHC----CCeeecCC-cCC--------C---------
Confidence            443210  000111122111 1267999999999999999999999    99998643 320        0         


Q ss_pred             HHHhcCeEEecCCCceEEEEEcccc
Q 013898          346 QCEELGVLVDRDDQGTLLQIFTKPV  370 (434)
Q Consensus       346 ~l~~~~iL~D~d~~g~llqifT~~~  370 (434)
                         ....+|-+|++|+++++++.+-
T Consensus       158 ---~~~~~~~~DPdG~~iel~~~~~  179 (184)
T 2za0_A          158 ---MKGLAFIQDPDGYWIEILNPNK  179 (184)
T ss_dssp             ---STTCEEEECTTCCEEEEECTTT
T ss_pred             ---ceeEEEEECCCCCEEEEEecCc
Confidence               1125677899999999987654

>3kol_A Oxidoreductase, glyoxalase/bleomycin resistance protein/dioxygenase; metal ION binding, NYSGXRC, PSI2, structural genomics; 1.90A {Nostoc punctiforme pcc 73102}

Probab=99.21  E-value=1.1e-11  Score=107.25  Aligned_cols=137  Identities=16%  Similarity=0.136  Sum_probs=89.0

Q ss_pred             ccceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCccc--ccCceEEEEEcCCCceEEEecccCCCCCCCchHH
Q 013898          203 DYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTS--ESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQ  280 (434)
Q Consensus       203 ~~~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~--~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~  280 (434)
                      ...+++|+||++.|+|++++++||+++|||+.............  ..+. ..++..++ ...|.|.+.... ....   
T Consensus        14 ~~~~~~i~hv~l~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~l~l~~~~~~-~~~~---   87 (156)
T 3kol_A           14 PGNLRKVHHIALNVQDMQASRYFYGTILGLHELTDDEVPATLTELVASGK-VANFITPD-GTILDLFGEPEL-SPPD---   87 (156)
T ss_dssp             TTSSCCCCEEEEEESCHHHHHHHHTTTSCCEECCTTTSCTTTHHHHHTTS-EEEEECTT-SCEEEEEECTTC-CCSS---
T ss_pred             ccccceEeEEEEEeCCHHHHHHHHHhhcCCEEEeecccCcchhcccCCCc-EEEEEeCC-CCEEEEEecCCC-CcCC---
Confidence            35688999999999999999999999999998753210000000  0111 23334333 345666554210 0000   


Q ss_pred             HHHhhcCCCCceEEEEEeC--CHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCC
Q 013898          281 TYLEHNEGAGVQHLALVSE--DIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDD  358 (434)
Q Consensus       281 ~fl~~~~G~GvqHIAf~vd--DI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~  358 (434)
                      . .....+.|++|+||.|+  ||++++++|+++    |++++..| ...        +            .-..+|-+|+
T Consensus        88 ~-~~~~~~~~~~h~~~~v~~~d~~~~~~~l~~~----G~~~~~~~-~~~--------~------------~g~~~~~~DP  141 (156)
T 3kol_A           88 P-NPEKTFTRAYHLAFDIDPQLFDRAVTVIGEN----KIAIAHGP-VTR--------P------------TGRGVYFYDP  141 (156)
T ss_dssp             S-STTCCCSSCCEEEEECCGGGHHHHHHHHHHT----TCCEEEEE-EEC---------------------CCEEEEEECT
T ss_pred             C-CCCCCCCceEEEEEEecHHHHHHHHHHHHHC----CCccccCc-eec--------C------------CccEEEEECC
Confidence            0 01224578999999999  999999999999    99988643 331        1            0125678899


Q ss_pred             CceEEEEEccccC
Q 013898          359 QGTLLQIFTKPVG  371 (434)
Q Consensus       359 ~g~llqifT~~~~  371 (434)
                      +|+++++++.|..
T Consensus       142 dG~~iel~~~~~~  154 (156)
T 3kol_A          142 DGFMIEIRCDPEA  154 (156)
T ss_dssp             TSCEEEEEECCC-
T ss_pred             CCCEEEEEecCCC
Confidence            9999999998753

>3ghj_A Putative integron gene cassette protein; integron cassette protein, mobIle metagenome, structural genomics, PSI-2; 1.47A {Uncultured bacterium}

Probab=99.21  E-value=7e-11  Score=102.06  Aligned_cols=116  Identities=16%  Similarity=0.137  Sum_probs=83.9

Q ss_pred             ccceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHH
Q 013898          203 DYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTY  282 (434)
Q Consensus       203 ~~~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~f  282 (434)
                      .+.+.+|+||++.|+|++++++||+++|||+......  +.       ...++..+++...|.|.+..            
T Consensus        23 ~m~i~~i~hv~l~v~Dl~~a~~FY~~~LG~~~~~~~~--~~-------~~~~~~~~~~~~~l~l~~~~------------   81 (141)
T 3ghj_A           23 PMNIKGLFEVAVKVKNLEKSSQFYTEILGFEAGLLDS--AR-------RWNFLWVSGRAGMVVLQEEK------------   81 (141)
T ss_dssp             ---CCCCCEEEEEESCHHHHHHHHHHTSCCEEEEEET--TT-------TEEEEEETTTTEEEEEEECC------------
T ss_pred             ceeeceecEEEEEeCCHHHHHHHHHHhcCCEEEEecC--CC-------cEEEEEecCCCcEEEEeccC------------
Confidence            4578999999999999999999999999999886542  11       11233334455777777642            


Q ss_pred             HhhcCCCCceEEEEEeC--CHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCc
Q 013898          283 LEHNEGAGVQHLALVSE--DIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQG  360 (434)
Q Consensus       283 l~~~~G~GvqHIAf~vd--DI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g  360 (434)
                          ...+.+|+||.|+  ||++++++|+++    |++++. |+...+       +            ....+|-+|++|
T Consensus        82 ----~~~~~~h~~~~v~~~dld~~~~~l~~~----G~~~~~-~~~~~~-------~------------~~~~~~~~DPdG  133 (141)
T 3ghj_A           82 ----ENWQQQHFSFRVEKSEIEPLKKALESK----GVSVHG-PVNQEW-------M------------QAVSLYFADPNG  133 (141)
T ss_dssp             ----SSCCCCEEEEEECGGGHHHHHHHHHHT----TCCCEE-EEEEGG-------G------------TEEEEEEECTTC
T ss_pred             ----CCCCCceEEEEEeHHHHHHHHHHHHHC----CCeEeC-CcccCC-------C------------CceEEEEECCCC
Confidence                2356899999997  999999999999    999883 322210       0            113567789999


Q ss_pred             eEEEEEc
Q 013898          361 TLLQIFT  367 (434)
Q Consensus       361 ~llqifT  367 (434)
                      +++++++
T Consensus       134 ~~iel~~  140 (141)
T 3ghj_A          134 HALEFTA  140 (141)
T ss_dssp             CEEEEEE
T ss_pred             CEEEEEE
Confidence            9999987

>2p7o_A Glyoxalase family protein; fosfomycin resistance protein, Mn binding, antibiotic resist metal binding protein, hydrolase; 1.44A {Listeria monocytogenes} PDB: 2p7k_A 2p7l_A 2p7m_A 2p7p_A 2p7q_A

Probab=99.20  E-value=2.9e-10  Score=96.08  Aligned_cols=124  Identities=19%  Similarity=0.184  Sum_probs=85.2

Q ss_pred             eeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhh
Q 013898          206 IRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEH  285 (434)
Q Consensus       206 l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~  285 (434)
                      +.+|+|+++.|+|++++++||+++|||+......  +......  ...++..  +...+.|.+...    .         
T Consensus         2 i~~i~hv~l~v~D~~~a~~FY~~~lG~~~~~~~~--~~~~~~~--~~~~~~~--~~~~l~l~~~~~----~---------   62 (133)
T 2p7o_A            2 ISGLSHITLIVKDLNKTTAFLQNIFNAEEIYSSG--DKTFSLS--KEKFFLI--AGLWICIMEGDS----L---------   62 (133)
T ss_dssp             CCEEEEEEEEESCHHHHHHHHHHHHCCEECC-------CCCSS--CEEEEEE--TTEEEEEEECSS----C---------
T ss_pred             CceEEEEEEEcCCHHHHHHHHHHhcCCEEeeecC--CcccccC--CceEEEe--CCEEEEEecCCC----C---------
Confidence            5789999999999999999999999999875432  1100000  0112333  235676665421    0         


Q ss_pred             cCCCCceEEEEEe--CCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEE
Q 013898          286 NEGAGVQHLALVS--EDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLL  363 (434)
Q Consensus       286 ~~G~GvqHIAf~v--dDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~ll  363 (434)
                       .+.|++|+||.|  +|+++++++|+++    |++++..| ...+       +            ....++-+|++|+++
T Consensus        63 -~~~~~~h~~~~v~~~d~~~~~~~l~~~----G~~~~~~~-~~~~-------~------------~~~~~~~~DPdG~~i  117 (133)
T 2p7o_A           63 -QERTYNHIAFQIQSEEVDEYTERIKAL----GVEMKPER-PRVQ-------G------------EGRSIYFYDFDNHLF  117 (133)
T ss_dssp             -CCCCSCEEEEECCGGGHHHHHHHHHHH----TCCEECCC-CCCT-------T------------CCCEEEEECSSSCEE
T ss_pred             -CCCCeeEEEEEcCHHHHHHHHHHHHHC----CCcccCCC-ccCC-------C------------CeeEEEEECCCCCEE
Confidence             246799999999  5999999999999    99998653 3210       0            113457789999999


Q ss_pred             EEEccccCCC
Q 013898          364 QIFTKPVGDR  373 (434)
Q Consensus       364 qifT~~~~~r  373 (434)
                      ++++.+...|
T Consensus       118 el~~~~~~~~  127 (133)
T 2p7o_A          118 ELHAGTLEER  127 (133)
T ss_dssp             EEECSSCCCC
T ss_pred             EEEcCChHHH
Confidence            9999887554

>2qqz_A Glyoxalase family protein, putative; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 1.92A {Bacillus anthracis str}

Probab=99.20  E-value=8.6e-11  Score=98.74  Aligned_cols=117  Identities=15%  Similarity=0.103  Sum_probs=81.4

Q ss_pred             cceeeeeeeeEec--CCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHH
Q 013898          204 YGIRRLDHAVGNV--PELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQT  281 (434)
Q Consensus       204 ~~l~~iDHv~i~V--~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~  281 (434)
                      +.+.+|+|+++.|  .|++++++||+++|||+......  ....    ....++..+  ...+.|....    ..     
T Consensus         6 m~~~~i~hv~l~v~~~D~~~a~~FY~~~lG~~~~~~~~--~~~~----~~~~~~~~~--~~~l~l~~~~----~~-----   68 (126)
T 2qqz_A            6 NYIQGIDHVQVAAPVGCEEEARAFYGETIGMEEIPKPE--ELKK----RGGCWFKCG--NQEIHIGVEQ----NF-----   68 (126)
T ss_dssp             CCEEEEEEEEEEECTTTHHHHHHHHTTTTCCEEECCCG--GGGG----GCCEEEEET--TEEEEEEECT----TC-----
T ss_pred             cccceeeeEEEEcccccHHHHHHHHHhcCCCEEecCcc--cccC----CCceEEEeC--CEEEEEEecC----CC-----
Confidence            4588999999999  79999999999999999875422  1000    111234433  3455554431    01     


Q ss_pred             HHhhcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCce
Q 013898          282 YLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGT  361 (434)
Q Consensus       282 fl~~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~  361 (434)
                           ...|.+|+||.|+|+++++++|+++    |++++..| ..        .             ....++-+|++|+
T Consensus        69 -----~~~~~~~~~f~v~d~~~~~~~l~~~----G~~~~~~~-~~--------~-------------g~~~~~~~DPdG~  117 (126)
T 2qqz_A           69 -----NPAKRAHPAFYVLKIDEFKQELIKQ----GIEVIDDH-AR--------P-------------DVIRFYVSDPFGN  117 (126)
T ss_dssp             -----CCCSSSCEEEEETTHHHHHHHHHHT----TCCCEEEC-SS--------T-------------TEEEEEEECTTSC
T ss_pred             -----CCCCceEEEEEcCCHHHHHHHHHHc----CCCccCCC-CC--------C-------------CeeEEEEECCCCC
Confidence                 1257899999999999999999999    99988643 21        0             1124577888999


Q ss_pred             EEEEEcc
Q 013898          362 LLQIFTK  368 (434)
Q Consensus       362 llqifT~  368 (434)
                      ++++++.
T Consensus       118 ~iel~~~  124 (126)
T 2qqz_A          118 RIEFMEN  124 (126)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEeC
Confidence            8888764

>3kol_A Oxidoreductase, glyoxalase/bleomycin resistance protein/dioxygenase; metal ION binding, NYSGXRC, PSI2, structural genomics; 1.90A {Nostoc punctiforme pcc 73102}

Probab=99.20  E-value=4.8e-11  Score=103.26  Aligned_cols=133  Identities=10%  Similarity=-0.036  Sum_probs=84.8

Q ss_pred             CCCCCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCc----eeEEEEEEEeCC-EEEEEEcCCCCCCCccccc
Q 013898           25 SDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGN----TVHASYLLRSGD-LRFVFTAPYSPSISDAADA   99 (434)
Q Consensus        25 ~~~~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~----~~~~~~~l~~G~-i~~vl~~p~~~~~~~~~~~   99 (434)
                      .+.+.+.+|+||.|.|+|++++++||+++|||++......+...    .......++.++ ..+.|........      
T Consensus        12 ~~~~~~~~i~hv~l~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~------   85 (156)
T 3kol_A           12 LAPGNLRKVHHIALNVQDMQASRYFYGTILGLHELTDDEVPATLTELVASGKVANFITPDGTILDLFGEPELSP------   85 (156)
T ss_dssp             CCTTSSCCCCEEEEEESCHHHHHHHHTTTSCCEECCTTTSCTTTHHHHHTTSEEEEECTTSCEEEEEECTTCCC------
T ss_pred             cCccccceEeEEEEEeCCHHHHHHHHHhhcCCEEEeecccCcchhcccCCCcEEEEEeCCCCEEEEEecCCCCc------
Confidence            34567899999999999999999999999999988632111000    001124455544 7777765432110      


Q ss_pred             CCCCCCCCCCChhHHhHHHHhcCCceeEEEEEec--CHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEee
Q 013898          100 GNSSASLPTFDHAACRSFAASHGLAARSIAVEVE--DADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVS  177 (434)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~l~~hG~gv~~Iaf~V~--Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd  177 (434)
                            .        .......+.+..|++|.|+  |+++++++++++|++++..|...... ....++++.|..+.|+.
T Consensus        86 ------~--------~~~~~~~~~~~~h~~~~v~~~d~~~~~~~l~~~G~~~~~~~~~~~~g-~~~~~~DPdG~~iel~~  150 (156)
T 3kol_A           86 ------P--------DPNPEKTFTRAYHLAFDIDPQLFDRAVTVIGENKIAIAHGPVTRPTG-RGVYFYDPDGFMIEIRC  150 (156)
T ss_dssp             ------S--------SSSTTCCCSSCCEEEEECCGGGHHHHHHHHHHTTCCEEEEEEEC-CC-EEEEEECTTSCEEEEEE
T ss_pred             ------C--------CCCCCCCCCceEEEEEEecHHHHHHHHHHHHHCCCccccCceecCCc-cEEEEECCCCCEEEEEe
Confidence                  0        0001123458889999999  99999999999999876665433221 23445555555666655


Q ss_pred             c
Q 013898          178 Y  178 (434)
Q Consensus       178 ~  178 (434)
                      .
T Consensus       151 ~  151 (156)
T 3kol_A          151 D  151 (156)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3ey7_A Biphenyl-2,3-DIOL 1,2-dioxygenase III-related protein; integron cassette protein mobIle metagenome structural genomics, oxidoreductase, PSI-2; HET: MSE; 1.60A {Vibrio cholerae} PDB: 3ey8_A*

Probab=99.20  E-value=1.2e-10  Score=97.89  Aligned_cols=125  Identities=17%  Similarity=0.290  Sum_probs=84.0

Q ss_pred             cceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHH
Q 013898          204 YGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYL  283 (434)
Q Consensus       204 ~~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl  283 (434)
                      +.+++|+|+++.|+|++++++||+++|||+.....    ..       ...+..+  ...+.|....... ..      .
T Consensus         6 m~~~~i~hi~l~v~D~~~a~~FY~~~lG~~~~~~~----~~-------~~~~~~~--~~~~~l~~~~~~~-~~------~   65 (133)
T 3ey7_A            6 MKISHLDHLVLTVADIPTTTNFYEKVLGMKAVSFG----AG-------RIALEFG--HQKINLHQLGNEF-EP------K   65 (133)
T ss_dssp             CCCCEEEEEEEEESCHHHHHHHHHHHHCCEEEEET----TT-------EEEEEET--TEEEEEEETTSCC-SS------C
T ss_pred             eEecccCEEEEEECCHHHHHHHHHHccCceEEEec----CC-------eEEEEcC--CEEEEEEcCCCCc-cc------c
Confidence            45789999999999999999999999999987642    10       1223333  3455554432110 01      0


Q ss_pred             hhcCCCCceEEEEEeCC-HHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceE
Q 013898          284 EHNEGAGVQHLALVSED-IFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTL  362 (434)
Q Consensus       284 ~~~~G~GvqHIAf~vdD-I~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~l  362 (434)
                      ....+.|.+|+||.|+| +++++++|+++    |++++..| ...       .+.  .       .....++-+|++|++
T Consensus        66 ~~~~~~~~~~~~~~v~dd~~~~~~~l~~~----G~~~~~~~-~~~-------~~~--~-------g~~~~~~~~DPdG~~  124 (133)
T 3ey7_A           66 AQNVRVGSADLCFITDTVLSDAMKHVEDQ----GVTIMEGP-VKR-------TGA--Q-------GAITSFYFRDPDGNL  124 (133)
T ss_dssp             CTTCCTTCCEEEEECSSCHHHHHHHHHHT----TCCCCEEE-EEE-------EET--T-------EEEEEEEEECTTCCE
T ss_pred             CCCCCCCccEEEEEeCcHHHHHHHHHHHC----CCccccCC-ccc-------cCC--C-------CCeEEEEEECCCCCE
Confidence            11246789999999997 99999999999    99988643 221       000  0       011356778888988


Q ss_pred             EEEEccc
Q 013898          363 LQIFTKP  369 (434)
Q Consensus       363 lqifT~~  369 (434)
                      +++++.+
T Consensus       125 iel~~~~  131 (133)
T 3ey7_A          125 IEVSTYS  131 (133)
T ss_dssp             EEEEESC
T ss_pred             EEEEecC
Confidence            8887654

>1r9c_A Glutathione transferase; fosfomycin resistance protein, Mn binding, antibiotic resist transferase; 1.83A {Mesorhizobium loti} SCOP: d.32.1.2

Probab=99.18  E-value=3.4e-10  Score=96.95  Aligned_cols=123  Identities=15%  Similarity=0.133  Sum_probs=85.8

Q ss_pred             eeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhh
Q 013898          206 IRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEH  285 (434)
Q Consensus       206 l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~  285 (434)
                      +++|+|+++.|+|++++++||+++|||+......  +... ..+ ...++..  +...|.|.+...    .         
T Consensus         2 i~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~--~~~~-~~~-~~~~~~~--g~~~l~l~~~~~----~---------   62 (139)
T 1r9c_A            2 IEGLSHMTFIVRDLERMTRILEGVFDAREVYASD--TEQF-SLS-REKFFLI--GDIWVAIMQGEK----L---------   62 (139)
T ss_dssp             EEEEEEEEEEESCHHHHHHHHHHHHCCEEEEEGG--GSTT-CCS-CEEEEEE--TTEEEEEEECCC----C---------
T ss_pred             CceEEEEEEEeCCHHHHHHHHHHhhCCEEeecCC--Cccc-ccc-ceEEEEE--CCEEEEEEeCCC----C---------
Confidence            6789999999999999999999999999876432  1110 001 0112333  235677765421    0         


Q ss_pred             cCCCCceEEEEEeC--CHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEE
Q 013898          286 NEGAGVQHLALVSE--DIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLL  363 (434)
Q Consensus       286 ~~G~GvqHIAf~vd--DI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~ll  363 (434)
                       ...|++|+||.|+  |+++++++|+++    |++++..| ....                   .....+|-+|++|+++
T Consensus        63 -~~~~~~h~~~~v~~~d~~~~~~~l~~~----G~~~~~~~-~~~~-------------------~~~~~~~~~DPdG~~i  117 (139)
T 1r9c_A           63 -AERSYNHIAFKIDDADFDRYAERVGKL----GLDMRPPR-PRVE-------------------GEGRSIYFYDDDNHMF  117 (139)
T ss_dssp             -SSCCSCEEEEECCGGGHHHHHHHHHHH----TCCBCCCC-C------------------------CCEEEEECTTSCEE
T ss_pred             -CCCCeeEEEEEcCHHHHHHHHHHHHHC----CCcccCCc-ccCC-------------------CCeEEEEEECCCCCEE
Confidence             1467999999999  999999999999    99988643 2210                   0124567889999999


Q ss_pred             EEEccccCC
Q 013898          364 QIFTKPVGD  372 (434)
Q Consensus       364 qifT~~~~~  372 (434)
                      ++++.|+..
T Consensus       118 el~~~~~~~  126 (139)
T 1r9c_A          118 ELHTGTLTE  126 (139)
T ss_dssp             EEECCCHHH
T ss_pred             EEEeCChhH
Confidence            999988753

>3huh_A Virulence protein STM3117; structural genomics, nysgrc, target 13955A1BCT15P1, dioxygen virulence, PSI-2, protein structure initiative; 1.50A {Salmonella enterica subsp} PDB: 3hnq_A

Probab=99.17  E-value=4.7e-10  Score=97.45  Aligned_cols=121  Identities=12%  Similarity=0.081  Sum_probs=84.2

Q ss_pred             CCCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCC
Q 013898           27 RFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASL  106 (434)
Q Consensus        27 ~~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~  106 (434)
                      .+.+.+++||.|.|+|++++++||+++|||++..+.+        ....++.|+..+.|........   +        .
T Consensus        18 ~m~i~~l~hv~l~v~D~~~a~~FY~~vLG~~~~~~~~--------~~~~l~~~~~~l~l~~~~~~~~---~--------~   78 (152)
T 3huh_A           18 QMIIDRIDHLVLTVSDISTTIRFYEEVLGFSAVTFKQ--------NRKALIFGAQKINLHQQEMEFE---P--------K   78 (152)
T ss_dssp             --CEEEEEEEEEEESCHHHHHHHHHHTTCCEEEEETT--------TEEEEEETTEEEEEEETTBCCS---S--------C
T ss_pred             CcccceeeEEEEEeCCHHHHHHHHHhcCCCEEEEccC--------CeEEEEeCCeEEEEeccCCcCC---C--------c
Confidence            4578999999999999999999999999999987732        1345677888887766432110   0        0


Q ss_pred             CCCChhHHhHHHHhcCCceeEEEEEec-CHHHHHHHHHHcCCCCCCCCccccCc---eEEEEEEecCCeEEEEee
Q 013898          107 PTFDHAACRSFAASHGLAARSIAVEVE-DADVAFNTSVAHGAKPSSPPVILDNL---AVIAEVQLYGDVVLRYVS  177 (434)
Q Consensus       107 ~~~~~~~~~~~l~~hG~gv~~Iaf~V~-Dvd~a~~ra~~~Ga~~~~~p~~~~~~---~~~~~i~~~Gg~~~~fvd  177 (434)
                                 ......|..|++|.|. |+++++++++++|+++..+|....+.   .....++++.|..++++.
T Consensus        79 -----------~~~~~~g~~hi~f~~~~dl~~~~~~l~~~G~~~~~~p~~~~~~~g~~~~~~~~DPdG~~iEl~~  142 (152)
T 3huh_A           79 -----------ASRPTPGSADLCFITSTPINDVVSEILQAGISIVEGPVERTGATGEIMSIYIRDPDGNLIEISQ  142 (152)
T ss_dssp             -----------CSSCCTTCCEEEEEESSCHHHHHHHHHHTTCCCSEEEEEEEETTEEEEEEEEECTTCCEEEEEE
T ss_pred             -----------CcCCCCCccEEEEEecCCHHHHHHHHHHCCCeEecCCccccCCCCcEEEEEEECCCCCEEEEEe
Confidence                       0012347779999987 99999999999999987666432111   234445666666666665

>2rk0_A Glyoxalase/bleomycin resistance protein/dioxygena; 11002Z, glyoxylase, dioxygenas PSI-II; 2.04A {Frankia SP}

Probab=99.17  E-value=1.8e-10  Score=98.21  Aligned_cols=124  Identities=15%  Similarity=0.203  Sum_probs=83.3

Q ss_pred             ceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHh
Q 013898          205 GIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLE  284 (434)
Q Consensus       205 ~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~  284 (434)
                      .+.+|+|+++.|+|++++++||+++|||+........+     .+.....+.   +...|.|.++..   ..+.  .+  
T Consensus         2 ~i~~i~hv~l~v~Dl~~a~~FY~~~lG~~~~~~~~~~~-----~~~~~~~~~---~~~~l~l~~~~~---~~~~--~~--   66 (136)
T 2rk0_A            2 SLSGVSHVSLTVRDLDISCRWYTEILDWKELVRGRGDT-----TSFAHGVLP---GGLSIVLREHDG---GGTD--LF--   66 (136)
T ss_dssp             CEEEEEEEEEECSCHHHHHHHHHHHHCCEEEEEEECSS-----EEEEEEECT---TSCEEEEEEETT---CSSS--CC--
T ss_pred             CCCcccEEEEEeCCHHHHHHHHHHhcCCEEEeeccCCC-----CceEEEEEc---CCCEEEEEeCCC---Cccc--CC--
Confidence            57899999999999999999999999999876543111     012222222   456777766531   1000  01  


Q ss_pred             hcCCCCceEEEEEe---CCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCce
Q 013898          285 HNEGAGVQHLALVS---EDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGT  361 (434)
Q Consensus       285 ~~~G~GvqHIAf~v---dDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~  361 (434)
                      ...+.|++|+||.|   +|+++++++|+++    |+++.. | ...        +           .. ..+|-+|++|+
T Consensus        67 ~~~~~g~~h~~f~v~~~~d~~~~~~~l~~~----G~~~~~-~-~~~--------~-----------~g-~~~~~~DPdG~  120 (136)
T 2rk0_A           67 DETRPGLDHLSFSVESMTDLDVLEERLAKA----GAAFTP-T-QEL--------P-----------FG-WILAFRDADNI  120 (136)
T ss_dssp             CTTSSEEEEEEEEESSHHHHHHHHHHHHHH----TCCBCC-C-EEE--------T-----------TE-EEEEEECTTCC
T ss_pred             CCCCCCcceEEEEeCCHHHHHHHHHHHHHC----CCcccC-c-ccc--------C-----------Cc-eEEEEECCCCC
Confidence            11457899999999   8999999999999    998774 3 220        0           01 23456788888


Q ss_pred             EEEEEccc
Q 013898          362 LLQIFTKP  369 (434)
Q Consensus       362 llqifT~~  369 (434)
                      ++++++.+
T Consensus       121 ~iel~~~~  128 (136)
T 2rk0_A          121 ALEAMLGR  128 (136)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEcC
Confidence            87777643

>2c21_A Trypanothione-dependent glyoxalase I; lyase, glutathionylspermidine, methylglyoxal, detoxification; 2.0A {Leishmania major} SCOP: d.32.1.1

Probab=99.15  E-value=6.6e-10  Score=95.70  Aligned_cols=121  Identities=19%  Similarity=0.178  Sum_probs=83.8

Q ss_pred             CCCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCC----EEEEEEcCCCCCCCcccccCCC
Q 013898           27 RFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGD----LRFVFTAPYSPSISDAADAGNS  102 (434)
Q Consensus        27 ~~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~----i~~vl~~p~~~~~~~~~~~~~~  102 (434)
                      ++.+.+++||.|.|+|++++++||+++|||++..+...+.+  ......++.++    ..|.|..+....          
T Consensus         3 ~m~~~~i~hv~l~v~D~~~a~~FY~~~lG~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~l~l~~~~~~~----------   70 (144)
T 2c21_A            3 HMPSRRMLHTMIRVGDLDRSIKFYTERLGMKVLRKWDVPED--KYTLVFLGYGPEMSSTVLELTYNYGVT----------   70 (144)
T ss_dssp             ---CCEEEEEEEECSCHHHHHHHHHHTTCCEEEEEEEEGGG--TEEEEEEESSCTTTSCEEEEEEETTCC----------
T ss_pred             CCccceeEEEEEEeCCHHHHHHHHHhcCCCEEEEeeecCCC--CeEEEEEEcCCCCCceEEEEEecCCCC----------
Confidence            35689999999999999999999999999998876431121  12334556553    677776543211          


Q ss_pred             CCCCCCCChhHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEeec
Q 013898          103 SASLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSY  178 (434)
Q Consensus       103 ~~~~~~~~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd~  178 (434)
                               .      ..++.++.||+|.|+|+++++++++++|+++...    .+...++.++++.|..+.++++
T Consensus        71 ---------~------~~~~~~~~h~~f~v~d~~~~~~~l~~~G~~~~~~----~g~~~~~~~~DPdG~~iel~~~  127 (144)
T 2c21_A           71 ---------S------YKHDEAYGHIAIGVEDVKELVADMRKHDVPIDYE----DESGFMAFVVDPDGYYIELLNE  127 (144)
T ss_dssp             ---------C------CCCCSSEEEEEEEESCHHHHHHHHHHTTCCEEEE----CSSSSEEEEECTTSCEEEEEEH
T ss_pred             ---------C------CCCCCCceEEEEEeCCHHHHHHHHHHCCCEEecc----CCcEEEEEEECCCCCEEEEEEc
Confidence                     0      0234578899999999999999999999986543    1222234567777777777764

>2i7r_A Conserved domain protein; structural genomics conserved domain, PSI-2, protein structure initiative; 2.20A {Streptococcus pneumoniae} SCOP: d.32.1.2

Probab=99.13  E-value=3.9e-10  Score=93.55  Aligned_cols=113  Identities=15%  Similarity=0.131  Sum_probs=75.4

Q ss_pred             cceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCC
Q 013898           30 VNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTF  109 (434)
Q Consensus        30 i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~  109 (434)
                      +++++||.+.|+|++++++||+++|||++....+        ....++.|+..+++....  ..   |            
T Consensus         3 ~m~i~~v~l~v~D~~~a~~FY~~~lG~~~~~~~~--------~~~~~~~~~~~l~l~~~~--~~---~------------   57 (118)
T 2i7r_A            3 AMNLNQLDIIVSNVPQVCADLEHILDKKADYAND--------GFAQFTIGSHCLMLSQNH--LV---P------------   57 (118)
T ss_dssp             -CEEEEEEEECSCHHHHHHHHHHHHTSCCSEEET--------TEEEEEETTEEEEEESSC--SS---S------------
T ss_pred             cceeeEEEEEeCCHHHHHHHHHHHhCCeeEEeCC--------CEEEEEeCCeEEEEEcCC--CC---C------------
Confidence            4789999999999999999999999999875432        134466787777664210  00   0            


Q ss_pred             ChhHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEe
Q 013898          110 DHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYV  176 (434)
Q Consensus       110 ~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fv  176 (434)
                              ...++.++ +++|.|+|+++++++++++|++++.+|...........++++.|..+.++
T Consensus        58 --------~~~~~~~~-~~~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~iel~  115 (118)
T 2i7r_A           58 --------LENFQSGI-IIHIEVEDVDQNYKRLNELGIKVLHGPTVTDWGTESLLVQGPAGLVLDFY  115 (118)
T ss_dssp             --------CCCCCSCE-EEEEECSCHHHHHHHHHHHTCCEEEEEEECTTSCEEEEEECGGGCEEEEE
T ss_pred             --------cccCCCeE-EEEEEECCHHHHHHHHHHCCCceecCCccccCccEEEEEECCCccEEEEE
Confidence                    00234465 69999999999999999999987666543321222333444444444444

>2p7o_A Glyoxalase family protein; fosfomycin resistance protein, Mn binding, antibiotic resist metal binding protein, hydrolase; 1.44A {Listeria monocytogenes} PDB: 2p7k_A 2p7l_A 2p7m_A 2p7p_A 2p7q_A

Probab=99.12  E-value=4.8e-10  Score=94.75  Aligned_cols=117  Identities=10%  Similarity=0.065  Sum_probs=78.4

Q ss_pred             cceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCc-eeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCC
Q 013898           30 VNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGN-TVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPT  108 (434)
Q Consensus        30 i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~-~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~  108 (434)
                      +.+++||.|.|+|++++++||++.|||++....+  ... .......++.|+..+.|.....                  
T Consensus         2 i~~i~hv~l~v~D~~~a~~FY~~~lG~~~~~~~~--~~~~~~~~~~~~~~~~~~l~l~~~~~------------------   61 (133)
T 2p7o_A            2 ISGLSHITLIVKDLNKTTAFLQNIFNAEEIYSSG--DKTFSLSKEKFFLIAGLWICIMEGDS------------------   61 (133)
T ss_dssp             CCEEEEEEEEESCHHHHHHHHHHHHCCEECC-------CCCSSCEEEEEETTEEEEEEECSS------------------
T ss_pred             CceEEEEEEEcCCHHHHHHHHHHhcCCEEeeecC--CcccccCCceEEEeCCEEEEEecCCC------------------
Confidence            6789999999999999999999999999875432  100 0001125666888887765210                  


Q ss_pred             CChhHHhHHHHhcCCceeEEEEEe--cCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEee
Q 013898          109 FDHAACRSFAASHGLAARSIAVEV--EDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVS  177 (434)
Q Consensus       109 ~~~~~~~~~l~~hG~gv~~Iaf~V--~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd  177 (434)
                                 ..+.+..|++|.|  +|+++++++++++|+++..+|...........++++.|..+.+++
T Consensus        62 -----------~~~~~~~h~~~~v~~~d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~  121 (133)
T 2p7o_A           62 -----------LQERTYNHIAFQIQSEEVDEYTERIKALGVEMKPERPRVQGEGRSIYFYDFDNHLFELHA  121 (133)
T ss_dssp             -----------CCCCCSCEEEEECCGGGHHHHHHHHHHHTCCEECCCCCCTTCCCEEEEECSSSCEEEEEC
T ss_pred             -----------CCCCCeeEEEEEcCHHHHHHHHHHHHHCCCcccCCCccCCCCeeEEEEECCCCCEEEEEc
Confidence                       0134677999999  599999999999999987665432122233445555555566554

>1r9c_A Glutathione transferase; fosfomycin resistance protein, Mn binding, antibiotic resist transferase; 1.83A {Mesorhizobium loti} SCOP: d.32.1.2

Probab=99.12  E-value=4.4e-10  Score=96.23  Aligned_cols=118  Identities=13%  Similarity=0.073  Sum_probs=78.4

Q ss_pred             cceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCC
Q 013898           30 VNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTF  109 (434)
Q Consensus        30 i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~  109 (434)
                      +.+++||.|.|+|++++++||++.|||++....+.... .......++.|+..|.|..... .                 
T Consensus         2 i~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~-~~~~~~~~~~g~~~l~l~~~~~-~-----------------   62 (139)
T 1r9c_A            2 IEGLSHMTFIVRDLERMTRILEGVFDAREVYASDTEQF-SLSREKFFLIGDIWVAIMQGEK-L-----------------   62 (139)
T ss_dssp             EEEEEEEEEEESCHHHHHHHHHHHHCCEEEEEGGGSTT-CCSCEEEEEETTEEEEEEECCC-C-----------------
T ss_pred             CceEEEEEEEeCCHHHHHHHHHHhhCCEEeecCCCccc-cccceEEEEECCEEEEEEeCCC-C-----------------
Confidence            67899999999999999999999999998876431000 0001115666888887765210 0                 


Q ss_pred             ChhHHhHHHHhcCCceeEEEEEec--CHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEee
Q 013898          110 DHAACRSFAASHGLAARSIAVEVE--DADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVS  177 (434)
Q Consensus       110 ~~~~~~~~l~~hG~gv~~Iaf~V~--Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd  177 (434)
                                 ...+..|++|.|+  |+++++++++++|+++..+|...........++++.|..++|++
T Consensus        63 -----------~~~~~~h~~~~v~~~d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~  121 (139)
T 1r9c_A           63 -----------AERSYNHIAFKIDDADFDRYAERVGKLGLDMRPPRPRVEGEGRSIYFYDDDNHMFELHT  121 (139)
T ss_dssp             -----------SSCCSCEEEEECCGGGHHHHHHHHHHHTCCBCCCCC-----CCEEEEECTTSCEEEEEC
T ss_pred             -----------CCCCeeEEEEEcCHHHHHHHHHHHHHCCCcccCCcccCCCCeEEEEEECCCCCEEEEEe
Confidence                       0246679999999  99999999999999977665432112223344555555555554

>3e5d_A Putative glyoxalase I; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 2.70A {Listeria monocytogenes str}

Probab=99.11  E-value=3.6e-10  Score=94.36  Aligned_cols=100  Identities=16%  Similarity=0.177  Sum_probs=70.4

Q ss_pred             ceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEe-CCEEEEEEcCCCCCCCcccccCCCCCCCCCC
Q 013898           31 NRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRS-GDLRFVFTAPYSPSISDAADAGNSSASLPTF  109 (434)
Q Consensus        31 ~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~-G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~  109 (434)
                      ++++||.|.|+|++++++||++.|||+.......+..  ......++. ++..+.|........  .             
T Consensus         2 m~i~hv~l~v~D~~~a~~FY~~~lG~~~~~~~~~~~~--~~~~~~~~~~~~~~l~l~~~~~~~~--~-------------   64 (127)
T 3e5d_A            2 MKIEHVALWTTNLEQMKQFYVTYFGATANDLYENKTK--GFNSYFLSFEDGARLEIMSRTDVTG--K-------------   64 (127)
T ss_dssp             CCCCEEEEECSSHHHHHHHHHHHHCCEECCCEEEGGG--TEEEEEEECSSSCEEEEEEETTCCC--C-------------
T ss_pred             CEEEEEEEEECCHHHHHHHHHHhcCCeeecccccCCC--CccEEEEEcCCCcEEEEEecCCCCC--C-------------
Confidence            5789999999999999999999999998764221111  123444443 567777765432110  0             


Q ss_pred             ChhHHhHHHHhcCCceeEEEEEecC---HHHHHHHHHHcCCCCCCCCcc
Q 013898          110 DHAACRSFAASHGLAARSIAVEVED---ADVAFNTSVAHGAKPSSPPVI  155 (434)
Q Consensus       110 ~~~~~~~~l~~hG~gv~~Iaf~V~D---vd~a~~ra~~~Ga~~~~~p~~  155 (434)
                              ....+.|+.|++|.|+|   +++++++++++|+++..+|..
T Consensus        65 --------~~~~~~g~~hi~~~v~d~~~v~~~~~~l~~~G~~~~~~~~~  105 (127)
T 3e5d_A           65 --------TTGENLGWAHIAISTGTKEAVDELTEKLRQDGFAIAGEPRM  105 (127)
T ss_dssp             --------CCSSCSSCCCEEEECSSHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             --------CCcCCCceEEEEEEcCCHHHHHHHHHHHHHcCCeEecCccc
Confidence                    00144578899999999   889999999999997665543

>3r4q_A Lactoylglutathione lyase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.51A {Agrobacterium tumefaciens}

Probab=99.10  E-value=4.7e-10  Score=98.94  Aligned_cols=126  Identities=10%  Similarity=-0.004  Sum_probs=87.2

Q ss_pred             CCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCC
Q 013898           28 FRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLP  107 (434)
Q Consensus        28 ~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~  107 (434)
                      +.+.+++||.|.|+|++++++||+++|||++....+  .     ...+++.|+..+.+..+....   +|     .... 
T Consensus         4 ~~i~~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~--~-----~~~~~~~g~~~~~l~~~~~~~---~~-----~~~~-   67 (160)
T 3r4q_A            4 KPPSAIMETALYADDLDAAEAFYRDVFGLEMVLKLP--G-----QLVFFKCGRQMLLLFDPQESS---RA-----DANN-   67 (160)
T ss_dssp             CCCSCEEEEEEECSCHHHHHHHHHHHSCCEEEEEET--T-----TEEEEEETTEEEEEECHHHHT---CC-----CTTC-
T ss_pred             cccccccEEEEEeCCHHHHHHHHHHhcCCEEEEecC--C-----cEEEEeCCCEEEEEEecCCcc---Cc-----cccC-
Confidence            468999999999999999999999999999987643  1     234556688777776532110   00     0000 


Q ss_pred             CCChhHHhHHHHhcCCceeEEEEEe---cCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEeec
Q 013898          108 TFDHAACRSFAASHGLAARSIAVEV---EDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSY  178 (434)
Q Consensus       108 ~~~~~~~~~~l~~hG~gv~~Iaf~V---~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd~  178 (434)
                              ......+.|+.+++|.|   +|+++++++++++|+++..++... +......++++.|..+.|+++
T Consensus        68 --------~~~~~~~~g~~hi~f~V~~~~dld~~~~~l~~~G~~~~~~~~~~-~g~~~~~~~DPdG~~iel~~~  132 (160)
T 3r4q_A           68 --------PIPRHGAVGQGHFCFYADDKAEVDEWKTRFEALEIPVEHYHRWP-NGSYSVYIRDPAGNSVEVGEG  132 (160)
T ss_dssp             --------CSCCCEEEEECEEEEEESSHHHHHHHHHHHHTTTCCCCEEEECT-TSCEEEEEECTTCCEEEEEEG
T ss_pred             --------CCCcCCCcceeEEEEEeCCHHHHHHHHHHHHHCCCEEecccccc-CCcEEEEEECCCCCEEEEEeC
Confidence                    00112334778999999   899999999999999976444322 233455667777777888775

>2qqz_A Glyoxalase family protein, putative; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 1.92A {Bacillus anthracis str}

Probab=99.10  E-value=8.7e-10  Score=92.49  Aligned_cols=117  Identities=9%  Similarity=0.010  Sum_probs=81.8

Q ss_pred             CCcceEEEEEEEe--CCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCC
Q 013898           28 FRVNRFHHVEFWC--TDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSAS  105 (434)
Q Consensus        28 ~~i~~l~HI~~~V--~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~  105 (434)
                      +.+.+++||.+.|  +|++++++||++.|||++..+.....+   .....++.|+..+.|.....               
T Consensus         6 m~~~~i~hv~l~v~~~D~~~a~~FY~~~lG~~~~~~~~~~~~---~~~~~~~~~~~~l~l~~~~~---------------   67 (126)
T 2qqz_A            6 NYIQGIDHVQVAAPVGCEEEARAFYGETIGMEEIPKPEELKK---RGGCWFKCGNQEIHIGVEQN---------------   67 (126)
T ss_dssp             CCEEEEEEEEEEECTTTHHHHHHHHTTTTCCEEECCCGGGGG---GCCEEEEETTEEEEEEECTT---------------
T ss_pred             cccceeeeEEEEcccccHHHHHHHHHhcCCCEEecCcccccC---CCceEEEeCCEEEEEEecCC---------------
Confidence            4578999999999  899999999999999998764321000   01234666888777764210               


Q ss_pred             CCCCChhHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEeec
Q 013898          106 LPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSY  178 (434)
Q Consensus       106 ~~~~~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd~  178 (434)
                                    ..+.+..|++|.|+|+++++++++++|+++...|. . .......++++.|..+.++++
T Consensus        68 --------------~~~~~~~~~~f~v~d~~~~~~~l~~~G~~~~~~~~-~-~g~~~~~~~DPdG~~iel~~~  124 (126)
T 2qqz_A           68 --------------FNPAKRAHPAFYVLKIDEFKQELIKQGIEVIDDHA-R-PDVIRFYVSDPFGNRIEFMEN  124 (126)
T ss_dssp             --------------CCCCSSSCEEEEETTHHHHHHHHHHTTCCCEEECS-S-TTEEEEEEECTTSCEEEEEEE
T ss_pred             --------------CCCCCceEEEEEcCCHHHHHHHHHHcCCCccCCCC-C-CCeeEEEEECCCCCEEEEEeC
Confidence                          01235678999999999999999999998766552 1 223344556666666666653

>3huh_A Virulence protein STM3117; structural genomics, nysgrc, target 13955A1BCT15P1, dioxygen virulence, PSI-2, protein structure initiative; 1.50A {Salmonella enterica subsp} PDB: 3hnq_A

Probab=99.08  E-value=7.1e-10  Score=96.28  Aligned_cols=125  Identities=18%  Similarity=0.267  Sum_probs=83.3

Q ss_pred             cceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHH
Q 013898          204 YGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYL  283 (434)
Q Consensus       204 ~~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl  283 (434)
                      +.+.+|+||++.|.|++++++||+++|||+.....    ..       ...+..+  ...+.|....... ..      .
T Consensus        19 m~i~~l~hv~l~v~D~~~a~~FY~~vLG~~~~~~~----~~-------~~~l~~~--~~~l~l~~~~~~~-~~------~   78 (152)
T 3huh_A           19 MIIDRIDHLVLTVSDISTTIRFYEEVLGFSAVTFK----QN-------RKALIFG--AQKINLHQQEMEF-EP------K   78 (152)
T ss_dssp             -CEEEEEEEEEEESCHHHHHHHHHHTTCCEEEEET----TT-------EEEEEET--TEEEEEEETTBCC-SS------C
T ss_pred             cccceeeEEEEEeCCHHHHHHHHHhcCCCEEEEcc----CC-------eEEEEeC--CeEEEEeccCCcC-CC------c
Confidence            46899999999999999999999999999987651    11       1233333  2455555432100 00      0


Q ss_pred             hhcCCCCceEEEEEeC-CHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceE
Q 013898          284 EHNEGAGVQHLALVSE-DIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTL  362 (434)
Q Consensus       284 ~~~~G~GvqHIAf~vd-DI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~l  362 (434)
                      ......|..|+||.++ |+++++++|+++    |++++..| ...       ...         --....++-+|++|++
T Consensus        79 ~~~~~~g~~hi~f~~~~dl~~~~~~l~~~----G~~~~~~p-~~~-------~~~---------~g~~~~~~~~DPdG~~  137 (152)
T 3huh_A           79 ASRPTPGSADLCFITSTPINDVVSEILQA----GISIVEGP-VER-------TGA---------TGEIMSIYIRDPDGNL  137 (152)
T ss_dssp             CSSCCTTCCEEEEEESSCHHHHHHHHHHT----TCCCSEEE-EEE-------EET---------TEEEEEEEEECTTCCE
T ss_pred             CcCCCCCccEEEEEecCCHHHHHHHHHHC----CCeEecCC-ccc-------cCC---------CCcEEEEEEECCCCCE
Confidence            1124578999999998 999999999999    99988643 221       000         0011345678889999


Q ss_pred             EEEEccc
Q 013898          363 LQIFTKP  369 (434)
Q Consensus       363 lqifT~~  369 (434)
                      +++++.+
T Consensus       138 iEl~~~~  144 (152)
T 3huh_A          138 IEISQYV  144 (152)
T ss_dssp             EEEEEC-
T ss_pred             EEEEecc
Confidence            9888765

>1sp8_A 4-hydroxyphenylpyruvate dioxygenase; oxidoreductase; 2.00A {Zea mays} SCOP: d.32.1.3 d.32.1.3

Probab=99.08  E-value=5.7e-10  Score=114.29  Aligned_cols=111  Identities=16%  Similarity=0.110  Sum_probs=84.1

Q ss_pred             ccceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCC--------
Q 013898          203 DYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTK--------  274 (434)
Q Consensus       203 ~~~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~--------  274 (434)
                      .+.+.+++||.+.|+|+++++.||+++|||++......+   +......+.++..  +.+.|.|+++.....        
T Consensus        26 ~~~i~~l~hV~i~V~Dle~a~~fY~~~LGf~~~~~~~~~---~G~~~~~~~~~~~--G~~~l~L~~~~~~~~~~~~~p~~  100 (418)
T 1sp8_A           26 RFHTLAFHHVELWCADAASAAGRFSFGLGAPLAARSDLS---TGNSAHASLLLRS--GSLSFLFTAPYAHGADAATAALP  100 (418)
T ss_dssp             SSCEEEEEEEEEECSCHHHHHHHHHHHHTCCEEEEESGG---GTCCSEEEEEEEE--TTEEEEEEEECCSSCCGGGCSST
T ss_pred             cccCceEEEEEEEeCCHHHHHHHHHHhCCCEEEEEEcCC---CCCcceEEEEEee--CCEEEEEecCCCCcccccccccc
Confidence            356899999999999999999999999999988664311   1111234444443  568899988742100        


Q ss_pred             --CCchHHHHHhhcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCC
Q 013898          275 --RKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSP  323 (434)
Q Consensus       275 --~~s~i~~fl~~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~p  323 (434)
                        ..+.+.+|+..| |+|++||||+|+|+++++++++++    |++++..|
T Consensus       101 ~~~~~~~~~~~~~h-g~gv~~iAf~V~Dv~~a~~~l~~~----Ga~~~~~p  146 (418)
T 1sp8_A          101 SFSAAAARRFAADH-GLAVRAVALRVADAEDAFRASVAA----GARPAFGP  146 (418)
T ss_dssp             TCCHHHHHHHHHHH-SSEEEEEEEEESCHHHHHHHHHTT----TCCEEEEE
T ss_pred             cccchhHHHHHhhc-CCeeEEEEEEeCCHHHHHHHHHHC----CCEEEecc
Confidence              025788999885 689999999999999999999999    99888653

>1nki_A Probable fosfomycin resistance protein; potassium binding loop, manganese binding, transferase; 0.95A {Pseudomonas aeruginosa} SCOP: d.32.1.2 PDB: 1lqo_A 1lqk_A 1lqp_A 1nnr_A

Probab=99.07  E-value=2.6e-09  Score=90.86  Aligned_cols=113  Identities=18%  Similarity=0.204  Sum_probs=82.1

Q ss_pred             eeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhh
Q 013898          206 IRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEH  285 (434)
Q Consensus       206 l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~  285 (434)
                      +++|+|+++.|+|++++++||+++|||+......  +         ...+..  +...|.|.....   .         .
T Consensus         2 i~~i~hv~l~v~D~~~a~~FY~~~lG~~~~~~~~--~---------~~~~~~--~~~~l~l~~~~~---~---------~   56 (135)
T 1nki_A            2 LTGLNHLTLAVADLPASIAFYRDLLGFRLEARWD--Q---------GAYLEL--GSLWLCLSREPQ---Y---------G   56 (135)
T ss_dssp             EEEEEEEEEEESCHHHHHHHHHHTTCCEEEEEET--T---------EEEEEE--TTEEEEEEECTT---C---------C
T ss_pred             CceEeEEEEEeCCHHHHHHHHHHhcCCEEEEcCC--C---------ceEEec--CCEEEEEEeCCC---C---------C
Confidence            6789999999999999999999999999876531  1         112333  234566655421   0         1


Q ss_pred             cCCCCceEEEEEeC--CHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEE
Q 013898          286 NEGAGVQHLALVSE--DIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLL  363 (434)
Q Consensus       286 ~~G~GvqHIAf~vd--DI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~ll  363 (434)
                      ....|.+|+||.|+  |+++++++|+++    |++++..| ..         +             -..++-+|++|+.+
T Consensus        57 ~~~~~~~h~~~~v~~~d~~~~~~~l~~~----G~~~~~~~-~~---------~-------------~~~~~~~DPdG~~i  109 (135)
T 1nki_A           57 GPAADYTHYAFGIAAADFARFAAQLRAH----GVREWKQN-RS---------E-------------GDSFYFLDPDGHRL  109 (135)
T ss_dssp             CCCSSSCEEEEEECHHHHHHHHHHHHHT----TCCEEECC-CS---------S-------------SCEEEEECTTCCEE
T ss_pred             CCCCCcceEEEEccHHHHHHHHHHHHHC----CCceecCC-CC---------C-------------eEEEEEECCCCCEE
Confidence            13567999999998  999999999999    99988643 21         1             12457788999999


Q ss_pred             EEEcccc
Q 013898          364 QIFTKPV  370 (434)
Q Consensus       364 qifT~~~  370 (434)
                      ++++.+-
T Consensus       110 el~~~~~  116 (135)
T 1nki_A          110 EAHVGDL  116 (135)
T ss_dssp             EEESCCH
T ss_pred             EEEECCc
Confidence            9887653

>1nki_A Probable fosfomycin resistance protein; potassium binding loop, manganese binding, transferase; 0.95A {Pseudomonas aeruginosa} SCOP: d.32.1.2 PDB: 1lqo_A 1lqk_A 1lqp_A 1nnr_A

Probab=99.07  E-value=2e-09  Score=91.58  Aligned_cols=111  Identities=14%  Similarity=0.029  Sum_probs=80.9

Q ss_pred             cceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCC
Q 013898           30 VNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTF  109 (434)
Q Consensus        30 i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~  109 (434)
                      +.+++||.|.|+|++++++||++.|||++....+  .      ...++.|+..+.|......                  
T Consensus         2 i~~i~hv~l~v~D~~~a~~FY~~~lG~~~~~~~~--~------~~~~~~~~~~l~l~~~~~~------------------   55 (135)
T 1nki_A            2 LTGLNHLTLAVADLPASIAFYRDLLGFRLEARWD--Q------GAYLELGSLWLCLSREPQY------------------   55 (135)
T ss_dssp             EEEEEEEEEEESCHHHHHHHHHHTTCCEEEEEET--T------EEEEEETTEEEEEEECTTC------------------
T ss_pred             CceEeEEEEEeCCHHHHHHHHHHhcCCEEEEcCC--C------ceEEecCCEEEEEEeCCCC------------------
Confidence            6789999999999999999999999999887632  1      1346678888877653110                  


Q ss_pred             ChhHHhHHHHhcCCceeEEEEEec--CHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEeec
Q 013898          110 DHAACRSFAASHGLAARSIAVEVE--DADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSY  178 (434)
Q Consensus       110 ~~~~~~~~l~~hG~gv~~Iaf~V~--Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd~  178 (434)
                               .....+..|++|.|+  |+++++++++++|+++..+|..  . .....++.+.|..+.+++.
T Consensus        56 ---------~~~~~~~~h~~~~v~~~d~~~~~~~l~~~G~~~~~~~~~--~-~~~~~~~DPdG~~iel~~~  114 (135)
T 1nki_A           56 ---------GGPAADYTHYAFGIAAADFARFAAQLRAHGVREWKQNRS--E-GDSFYFLDPDGHRLEAHVG  114 (135)
T ss_dssp             ---------CCCCSSSCEEEEEECHHHHHHHHHHHHHTTCCEEECCCS--S-SCEEEEECTTCCEEEEESC
T ss_pred             ---------CCCCCCcceEEEEccHHHHHHHHHHHHHCCCceecCCCC--C-eEEEEEECCCCCEEEEEEC
Confidence                     012346779999997  9999999999999987665532  1 1234456666666666653

>2pjs_A AGR_C_3564P, uncharacterized protein ATU1953; glyoxalase/bleomycin resistance protein/dioxygenase superfamily, structural genomics; 1.85A {Agrobacterium tumefaciens str} SCOP: d.32.1.2

Probab=99.07  E-value=8.5e-10  Score=91.35  Aligned_cols=111  Identities=14%  Similarity=0.090  Sum_probs=74.5

Q ss_pred             CCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeC---CEEEEEEcCCCCCCCcccccCCCCC
Q 013898           28 FRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSG---DLRFVFTAPYSPSISDAADAGNSSA  104 (434)
Q Consensus        28 ~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G---~i~~vl~~p~~~~~~~~~~~~~~~~  104 (434)
                      |.+.++ ||.|.|+|++++.+||++.|||++....+        ....++.+   +..+.+..+..              
T Consensus         4 m~i~~i-~v~l~v~d~~~a~~FY~~~lG~~~~~~~~--------~~~~~~~~~~~~~~l~l~~~~~--------------   60 (119)
T 2pjs_A            4 MAVRRV-VANIATPEPARAQAFYGDILGMPVAMDHG--------WIVTHASPLEAHAQVSFAREGG--------------   60 (119)
T ss_dssp             -CEEEE-EEEEECSCGGGGHHHHTTTTCCCEEEECS--------SEEEEEEEEEEEEEEEEESSSB--------------
T ss_pred             cceeEE-EEEEEcCCHHHHHHHHHHhcCCEEEecCC--------EEEEEecCCCCcEEEEEEcCCC--------------
Confidence            467889 99999999999999999999999886421        12233433   45566553210              


Q ss_pred             CCCCCChhHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEee
Q 013898          105 SLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVS  177 (434)
Q Consensus       105 ~~~~~~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd  177 (434)
                                      ...+..+++|.|+|+++++++++++|+++..+|...........++++.|..+.+++
T Consensus        61 ----------------~~~~~~~~~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~iel~~  117 (119)
T 2pjs_A           61 ----------------SGTDVPDLSIEVDNFDEVHARILKAGLPIEYGPVTEAWGVQRLFLRDPFGKLINILS  117 (119)
T ss_dssp             ----------------TTBCCCSEEEEESCHHHHHHHHHHTTCCCSEEEEECTTSCEEEEEECTTSCEEEEEE
T ss_pred             ----------------CCCceeEEEEEECCHHHHHHHHHHCCCccccCCccCCCccEEEEEECCCCCEEEEEe
Confidence                            112345899999999999999999999977665432112233444555555555544

>1npb_A Fosfomycin-resistance protein; manganese binding, potassium binding loop, transferase; 2.50A {Serratia marcescens} SCOP: d.32.1.2

Probab=99.06  E-value=1.2e-09  Score=93.64  Aligned_cols=116  Identities=13%  Similarity=0.171  Sum_probs=82.9

Q ss_pred             eeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhh
Q 013898          206 IRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEH  285 (434)
Q Consensus       206 l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~  285 (434)
                      +.+|+|+++.|+|++++++||+++|||+.....+  +         ..++..+  ...|.|......  ..       ..
T Consensus         2 i~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~--~---------~~~~~~~--~~~l~l~~~~~~--~~-------~~   59 (141)
T 1npb_A            2 LQSLNHLTLAVSDLQKSVTFWHELLGLTLHARWN--T---------GAYLTCG--DLWVCLSYDEAR--QY-------VP   59 (141)
T ss_dssp             CCEEEEEEEEESCHHHHHHHHHTTSCCEEEEEET--T---------EEEEEET--TEEEEEEECTTC--CC-------CC
T ss_pred             CceEEEEEEEeCCHHHHHHHHHhccCCEEEeecC--C---------cEEEEEC--CEEEEEEECCCC--CC-------CC
Confidence            5789999999999999999999999999876532  1         1223332  345666554210  00       01


Q ss_pred             cCCCCceEEEEEeC--CHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEE
Q 013898          286 NEGAGVQHLALVSE--DIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLL  363 (434)
Q Consensus       286 ~~G~GvqHIAf~vd--DI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~ll  363 (434)
                      ..+.|.+|+||.|+  |+++++++|+++    |++++..| ..         +             ...++-+|++|+++
T Consensus        60 ~~~~~~~hi~~~v~~~d~~~~~~~l~~~----G~~~~~~~-~~---------~-------------~~~~~~~DPdG~~i  112 (141)
T 1npb_A           60 PQESDYTHYAFTVAEEDFEPLSQRLEQA----GVTIWKQN-KS---------E-------------GASFYFLDPDGHKL  112 (141)
T ss_dssp             GGGSCSCEEEEECCHHHHHHHHHHHHHT----TCCEEECC-CS---------S-------------SEEEEEECTTCCEE
T ss_pred             CCCCCceEEEEEeCHHHHHHHHHHHHHC----CCeEeccC-CC---------c-------------eeEEEEECCCCCEE
Confidence            13467999999996  999999999999    99988643 21         1             12457789999999


Q ss_pred             EEEcccc
Q 013898          364 QIFTKPV  370 (434)
Q Consensus       364 qifT~~~  370 (434)
                      ++++.+.
T Consensus       113 el~~~~~  119 (141)
T 1npb_A          113 ELHVGSL  119 (141)
T ss_dssp             EEEECCH
T ss_pred             EEEECch
Confidence            9988664

>3ghj_A Putative integron gene cassette protein; integron cassette protein, mobIle metagenome, structural genomics, PSI-2; 1.47A {Uncultured bacterium}

Probab=99.06  E-value=1.8e-09  Score=93.06  Aligned_cols=88  Identities=9%  Similarity=0.065  Sum_probs=65.1

Q ss_pred             CCCCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeC--CEEEEEEcCCCCCCCcccccCCCC
Q 013898           26 DRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSG--DLRFVFTAPYSPSISDAADAGNSS  103 (434)
Q Consensus        26 ~~~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G--~i~~vl~~p~~~~~~~~~~~~~~~  103 (434)
                      .++.+.+|+||.|.|+|++++++||++.|||++....+  .+    ....++.+  +..+.|..+.              
T Consensus        22 ~~m~i~~i~hv~l~v~Dl~~a~~FY~~~LG~~~~~~~~--~~----~~~~~~~~~~~~~l~l~~~~--------------   81 (141)
T 3ghj_A           22 VPMNIKGLFEVAVKVKNLEKSSQFYTEILGFEAGLLDS--AR----RWNFLWVSGRAGMVVLQEEK--------------   81 (141)
T ss_dssp             ----CCCCCEEEEEESCHHHHHHHHHHTSCCEEEEEET--TT----TEEEEEETTTTEEEEEEECC--------------
T ss_pred             CceeeceecEEEEEeCCHHHHHHHHHHhcCCEEEEecC--CC----cEEEEEecCCCcEEEEeccC--------------
Confidence            35678999999999999999999999999999987743  11    12334433  5777776531              


Q ss_pred             CCCCCCChhHHhHHHHhcCCceeEEEEEec--CHHHHHHHHHHcCCCCC
Q 013898          104 ASLPTFDHAACRSFAASHGLAARSIAVEVE--DADVAFNTSVAHGAKPS  150 (434)
Q Consensus       104 ~~~~~~~~~~~~~~l~~hG~gv~~Iaf~V~--Dvd~a~~ra~~~Ga~~~  150 (434)
                                       ...+..+++|.|+  |+++++++++++|+++.
T Consensus        82 -----------------~~~~~~h~~~~v~~~dld~~~~~l~~~G~~~~  113 (141)
T 3ghj_A           82 -----------------ENWQQQHFSFRVEKSEIEPLKKALESKGVSVH  113 (141)
T ss_dssp             -----------------SSCCCCEEEEEECGGGHHHHHHHHHHTTCCCE
T ss_pred             -----------------CCCCCceEEEEEeHHHHHHHHHHHHHCCCeEe
Confidence                             1124568999987  99999999999999876

>3bqx_A Glyoxalase-related enzyme; VOC superfamily, PSI-2, STRU genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; 1.40A {Fulvimarina pelagi}

Probab=99.06  E-value=8.1e-10  Score=96.04  Aligned_cols=122  Identities=11%  Similarity=0.062  Sum_probs=82.5

Q ss_pred             CcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCC
Q 013898           29 RVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPT  108 (434)
Q Consensus        29 ~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~  108 (434)
                      ++.+++||.|.|+|++++++||+++|||++....+        ....++.|+..|.|.......                
T Consensus         2 M~~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~--------~~~~~~~~~~~l~l~~~~~~~----------------   57 (150)
T 3bqx_A            2 SLQQVAVITLGIGDLEASARFYGEGFGWAPVFRNP--------EIIFYQMNGFVLATWLVQNLQ----------------   57 (150)
T ss_dssp             -CCCCCEEEEEESCHHHHHHHHHHTSCCCCSEECS--------SEEEEECSSSEEEEEEHHHHH----------------
T ss_pred             CccceEEEEEEcCCHHHHHHHHHHhcCCEeecCCC--------CEEEEEcCCEEEEEEeccccc----------------
Confidence            45789999999999999999999999999876531        134566688888876531000                


Q ss_pred             CChhHHhHHHHhcCCceeEEEEEe---cCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEeec
Q 013898          109 FDHAACRSFAASHGLAARSIAVEV---EDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSY  178 (434)
Q Consensus       109 ~~~~~~~~~l~~hG~gv~~Iaf~V---~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd~  178 (434)
                         ... ......+.+..+++|.|   +|+++++++++++|++++.+|...........++++.|..+.|+..
T Consensus        58 ---~~~-~~~~~~~~~~~~l~f~v~~~~dv~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~iel~~~  126 (150)
T 3bqx_A           58 ---EDV-GVAVTSRPGSMALAHNVRAETEVAPLMERLVAAGGQLLRPADAPPHGGLRGYVADPDGHIWEIAFN  126 (150)
T ss_dssp             ---HHH-SSCCCSSCCSCEEEEECSSGGGHHHHHHHHHHTTCEEEEEEECCTTSSEEEEEECTTCCEEEEEEC
T ss_pred             ---ccc-CCCCCCCCCeEEEEEEeCCHHHHHHHHHHHHHCCCEEecCCcccCCCCEEEEEECCCCCEEEEEeC
Confidence               000 00001134667999999   8999999999999998766654332222344556666666666653

>1sqd_A 4-hydroxyphenylpyruvate dioxygenase; oxidoreductase; 1.80A {Arabidopsis thaliana} SCOP: d.32.1.3 d.32.1.3 PDB: 1tfz_A* 1tg5_A* 1sp9_A

Probab=99.06  E-value=1.4e-09  Score=111.68  Aligned_cols=112  Identities=12%  Similarity=0.072  Sum_probs=85.0

Q ss_pred             CCCCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCC---ceeEEEEEEE--eCCEEEEEEcCCCCCCCcccccC
Q 013898           26 DRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTG---NTVHASYLLR--SGDLRFVFTAPYSPSISDAADAG  100 (434)
Q Consensus        26 ~~~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g---~~~~~~~~l~--~G~i~~vl~~p~~~~~~~~~~~~  100 (434)
                      ....+.+|+||.+.|+|++++++||+++|||++..+...++.   .....+.++.  .|.+.|.|++|.....       
T Consensus       196 ~~~~~~~idHv~i~V~dl~~a~~FY~~~LGf~~~~~~~~~d~~~~~~gl~s~~l~~~~g~~~l~l~e~~~~~~-------  268 (424)
T 1sqd_A          196 LDYGIRRLDHAVGNVPELGPALTYVAGFTGFHQFAEFTADDVGTAESGLNSAVLASNDEMVLLPINEPVHGTK-------  268 (424)
T ss_dssp             CCSSEEEEEEEEEECSCHHHHHHHHHHHHCCEEEEEEC--------CCEEEEEEECTTSCSEEEEEEECCC---------
T ss_pred             CcCCcceEeeEEEeeCCHHHHHHHHHHhhCCeEEEEEcccccccccccceEEEEEcCCCcEEEEEecccccCC-------
Confidence            345688999999999999999999999999999876532211   1123444554  3778999998752100       


Q ss_pred             CCCCCCCCCChhHHhHHHHh-cCCceeEEEEEecCHHHHHHHHHH----cCCCCCCCC
Q 013898          101 NSSASLPTFDHAACRSFAAS-HGLAARSIAVEVEDADVAFNTSVA----HGAKPSSPP  153 (434)
Q Consensus       101 ~~~~~~~~~~~~~~~~~l~~-hG~gv~~Iaf~V~Dvd~a~~ra~~----~Ga~~~~~p  153 (434)
                               ..+.+.+|++. +|+|++||||.|+|+.++++++++    .|++++..|
T Consensus       269 ---------~~s~i~~fl~~~~G~G~~HIAf~vdDI~~a~~~L~~r~~~~Gv~~l~~p  317 (424)
T 1sqd_A          269 ---------RKSQIQTYLEHNEGAGLQHLALMSEDIFRTLREMRKRSSIGGFDFMPSP  317 (424)
T ss_dssp             ----------CCHHHHHHHHHTSCEEEEEEEEESCHHHHHHHHHHHGGGTSCCBCCCC
T ss_pred             ---------CcchhhhhhhhcCCCCcCEEEEEeCCHHHHHHHHHhhhccCCcEEecCC
Confidence                     02567899986 478999999999999999999999    799988764

>3zw5_A Glyoxalase domain-containing protein 5; lyase; 1.60A {Homo sapiens}

Probab=99.06  E-value=2.9e-09  Score=92.23  Aligned_cols=99  Identities=18%  Similarity=0.151  Sum_probs=71.8

Q ss_pred             CCCCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCC
Q 013898           26 DRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSAS  105 (434)
Q Consensus        26 ~~~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~  105 (434)
                      +++.+.+|+||.|.|+|++++++||+++|||++....+  .      ...++.|+..+.|.....+..   |        
T Consensus        21 ~~m~i~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~--~------~~~l~~g~~~l~l~~~~~~~~---~--------   81 (147)
T 3zw5_A           21 QSMLIRRLDHIVMTVKSIKDTTMFYSKILGMEVMTFKE--D------RKALCFGDQKFNLHEVGKEFE---P--------   81 (147)
T ss_dssp             HHTSCEEEEEEEEEESCHHHHHHHHHHHHCCEEEEETT--T------EEEEEETTEEEEEEETTSCCS---S--------
T ss_pred             cceecccccEEEEEeCCHHHHHHHHHHhcCCEEEecCC--C------ceEEEECCcEEEEEEcCCCcC---c--------
Confidence            35678999999999999999999999999999986532  1      234566887777765322110   0        


Q ss_pred             CCCCChhHHhHHHHhcCCceeEEEEEec-CHHHHHHHHHHcCCCCCCCCc
Q 013898          106 LPTFDHAACRSFAASHGLAARSIAVEVE-DADVAFNTSVAHGAKPSSPPV  154 (434)
Q Consensus       106 ~~~~~~~~~~~~l~~hG~gv~~Iaf~V~-Dvd~a~~ra~~~Ga~~~~~p~  154 (434)
                      .           ......|..+++|.+. |+++++++++++|+++...|.
T Consensus        82 ~-----------~~~~~~g~~~~~~~~~~dl~~~~~~l~~~G~~~~~~p~  120 (147)
T 3zw5_A           82 K-----------AAHPVPGSLDICLITEVPLEEMIQHLKACDVPIEEGPV  120 (147)
T ss_dssp             C-----------CSSCCTTCCEEEEECSSCHHHHHHHHHHTTCCCCEEEE
T ss_pred             c-----------cCCCCCCCceEEEEeccCHHHHHHHHHHcCCceeeCcc
Confidence            0           0012346678999886 999999999999998765553

>1npb_A Fosfomycin-resistance protein; manganese binding, potassium binding loop, transferase; 2.50A {Serratia marcescens} SCOP: d.32.1.2

Probab=99.06  E-value=2.2e-09  Score=92.02  Aligned_cols=114  Identities=13%  Similarity=0.037  Sum_probs=83.9

Q ss_pred             cceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCC
Q 013898           30 VNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTF  109 (434)
Q Consensus        30 i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~  109 (434)
                      +.+++||.|.|+|++++++||+++|||++....+  .      ...++.|+..+.|.......    +            
T Consensus         2 i~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~--~------~~~~~~~~~~l~l~~~~~~~----~------------   57 (141)
T 1npb_A            2 LQSLNHLTLAVSDLQKSVTFWHELLGLTLHARWN--T------GAYLTCGDLWVCLSYDEARQ----Y------------   57 (141)
T ss_dssp             CCEEEEEEEEESCHHHHHHHHHTTSCCEEEEEET--T------EEEEEETTEEEEEEECTTCC----C------------
T ss_pred             CceEEEEEEEeCCHHHHHHHHHhccCCEEEeecC--C------cEEEEECCEEEEEEECCCCC----C------------
Confidence            6789999999999999999999999999887642  1      23467788888877632110    0            


Q ss_pred             ChhHHhHHHHhcCCceeEEEEEec--CHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEeec
Q 013898          110 DHAACRSFAASHGLAARSIAVEVE--DADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSY  178 (434)
Q Consensus       110 ~~~~~~~~l~~hG~gv~~Iaf~V~--Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd~  178 (434)
                              ...++.+..|++|.|+  |+++++++++++|+++...|..   ......++.+.|..+.+++.
T Consensus        58 --------~~~~~~~~~hi~~~v~~~d~~~~~~~l~~~G~~~~~~~~~---~~~~~~~~DPdG~~iel~~~  117 (141)
T 1npb_A           58 --------VPPQESDYTHYAFTVAEEDFEPLSQRLEQAGVTIWKQNKS---EGASFYFLDPDGHKLELHVG  117 (141)
T ss_dssp             --------CCGGGSCSCEEEEECCHHHHHHHHHHHHHTTCCEEECCCS---SSEEEEEECTTCCEEEEEEC
T ss_pred             --------CCCCCCCceEEEEEeCHHHHHHHHHHHHHCCCeEeccCCC---ceeEEEEECCCCCEEEEEEC
Confidence                    0123356789999996  9999999999999987765532   22345567777777777764

>1twu_A Hypothetical protein YYCE; structural genomics, protein structure initiative, MCSG, DUP of the alpha-beta sandwichs. bacillus subtilis, PSI; 2.00A {Bacillus subtilis} SCOP: d.32.1.8

Probab=99.05  E-value=2.5e-09  Score=91.46  Aligned_cols=120  Identities=12%  Similarity=0.128  Sum_probs=80.9

Q ss_pred             eeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcC
Q 013898          208 RLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNE  287 (434)
Q Consensus       208 ~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~  287 (434)
                      .+-||++.|+|++++++||+++|||++...... +     .+.....+..++....|.+.....   .. .      ...
T Consensus        11 ~~~~i~l~v~Dl~~s~~FY~~~LG~~~~~~~~~-~-----~~~~~~~~~~~~~~~~l~l~~~~~---~~-~------~~~   74 (139)
T 1twu_A           11 AQIRIARPTGQLDEIIRFYEEGLCLKRIGEFSQ-H-----NGYDGVMFGLPHADYHLEFTQYEG---GS-T------APV   74 (139)
T ss_dssp             SCEEEEEECSCHHHHHHHHTTTSCCCEEEEEEE-E-----TTEEEEEEESSSSSEEEEEEEETT---CC-C------CCC
T ss_pred             ceeEEeeEeCCHHHHHHHHHhcCCcEEEEeccC-C-----CCeeEEEEecCCCceEEEEeecCC---CC-C------CCC
Confidence            355788889999999999999999998765431 0     113334555555556666654321   00 0      123


Q ss_pred             CCCceEEEEEeCCH---HHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEE
Q 013898          288 GAGVQHLALVSEDI---FRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQ  364 (434)
Q Consensus       288 G~GvqHIAf~vdDI---~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llq  364 (434)
                      +.|++||||.|+|+   ++++++|+++    |+++...+ ..++                   ...++ |-+|++|+++.
T Consensus        75 ~~~~~hi~~~v~d~~~l~~~~~~l~~~----G~~~~~~~-~~~~-------------------~~~g~-~~~DPdG~~ie  129 (139)
T 1twu_A           75 PHPDSLLVFYVPNAVELAAITSKLKHM----GYQEVESE-NPYW-------------------SNGGV-TIEDPDGWRIV  129 (139)
T ss_dssp             CCTTCEEEEECCCHHHHHHHHHHHHHT----TCCEECCS-SHHH-------------------HSSEE-EEECTTCCEEE
T ss_pred             CCCccEEEEEeCCcchHHHHHHHHHHc----CCcCcCCC-Cccc-------------------CCCCe-EEECCCCCEEE
Confidence            56789999999999   9999999999    99988421 1110                   11233 56788898888


Q ss_pred             EEcc
Q 013898          365 IFTK  368 (434)
Q Consensus       365 ifT~  368 (434)
                      +++.
T Consensus       130 l~~~  133 (139)
T 1twu_A          130 FMNS  133 (139)
T ss_dssp             EESS
T ss_pred             EEEc
Confidence            8875

>3sk2_A EHPR; antibiotic resistance, griseoluteate-binding protein; HET: GRI; 1.01A {Pantoea agglomerans} PDB: 3sk1_A*

Probab=99.05  E-value=4.7e-10  Score=95.29  Aligned_cols=116  Identities=9%  Similarity=0.035  Sum_probs=82.0

Q ss_pred             ceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHh
Q 013898          205 GIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLE  284 (434)
Q Consensus       205 ~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~  284 (434)
                      .+.+++|+++.|+|++++++||+++|||+......    .     .  ..+... +...+.|.....   ..        
T Consensus        10 ~~~~i~~v~l~v~D~~~s~~FY~~~lG~~~~~~~~----~-----~--~~~~~~-~~~~l~l~~~~~---~~--------   66 (132)
T 3sk2_A           10 PTITPNLQLVYVSNVERSTDFYRFIFKKEPVFVTP----R-----Y--VAFPSS-GDALFAIWSGGE---EP--------   66 (132)
T ss_dssp             CCCCCCEEEEECSCHHHHHHHHHHHHTCCCSEECS----S-----E--EEEECS-TTCEEEEESSSC---CC--------
T ss_pred             CcceeeEEEEEECCHHHHHHHHHHHcCCeEEEcCC----C-----E--EEEEcC-CCcEEEEEeCCC---CC--------
Confidence            45789999999999999999999999999875421    0     1  122222 345666655421   11        


Q ss_pred             hcCCCCceEEEEEeCC---HHHHHHHHHH---hcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCC
Q 013898          285 HNEGAGVQHLALVSED---IFRTLREMRK---RSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDD  358 (434)
Q Consensus       285 ~~~G~GvqHIAf~vdD---I~~av~~L~~---~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~  358 (434)
                      ....+|..|++|.|+|   +++++++|++   +    |++++..| ...        +           .. ..++-+|+
T Consensus        67 ~~~~~~~~~~~~~v~~~~dv~~~~~~l~~~~~~----G~~~~~~p-~~~--------~-----------~g-~~~~~~DP  121 (132)
T 3sk2_A           67 VAEIPRFSEIGIMLPTGEDVDKLFNEWTKQKSH----QIIVIKEP-YTD--------V-----------FG-RTFLISDP  121 (132)
T ss_dssp             CTTSCCCEEEEEEESSHHHHHHHHHHHHHCSSS----CCEEEEEE-EEE--------T-----------TE-EEEEEECT
T ss_pred             cCCCCCcceEEEEeCCHHHHHHHHHHHHhhhcC----CCEEeeCC-ccc--------C-----------ce-EEEEEECC
Confidence            1134678999999987   9999999999   9    99988643 321        0           01 24577899


Q ss_pred             CceEEEEEcc
Q 013898          359 QGTLLQIFTK  368 (434)
Q Consensus       359 ~g~llqifT~  368 (434)
                      +|++++|++.
T Consensus       122 dGn~iel~~~  131 (132)
T 3sk2_A          122 DGHIIRVCPL  131 (132)
T ss_dssp             TCCEEEEEEC
T ss_pred             CCCEEEEEeC
Confidence            9999999874

>3r4q_A Lactoylglutathione lyase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.51A {Agrobacterium tumefaciens}

Probab=99.04  E-value=3e-10  Score=100.18  Aligned_cols=128  Identities=9%  Similarity=0.097  Sum_probs=84.1

Q ss_pred             ceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHh
Q 013898          205 GIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLE  284 (434)
Q Consensus       205 ~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~  284 (434)
                      .+.+|+||++.|+|++++++||+++|||+......  +        ...++..+  ...+.+..+.....+...  .-..
T Consensus         5 ~i~~l~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~--~--------~~~~~~~g--~~~~~l~~~~~~~~~~~~--~~~~   70 (160)
T 3r4q_A            5 PPSAIMETALYADDLDAAEAFYRDVFGLEMVLKLP--G--------QLVFFKCG--RQMLLLFDPQESSRADAN--NPIP   70 (160)
T ss_dssp             CCSCEEEEEEECSCHHHHHHHHHHHSCCEEEEEET--T--------TEEEEEET--TEEEEEECHHHHTCCCTT--CCSC
T ss_pred             ccccccEEEEEeCCHHHHHHHHHHhcCCEEEEecC--C--------cEEEEeCC--CEEEEEEecCCccCcccc--CCCC
Confidence            47899999999999999999999999999876532  1        11223322  234444332100000000  0001


Q ss_pred             hcCCCCceEEEEEe---CCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCce
Q 013898          285 HNEGAGVQHLALVS---EDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGT  361 (434)
Q Consensus       285 ~~~G~GvqHIAf~v---dDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~  361 (434)
                      ...+.|+.|+||.|   +|+++++++|+++    |++++..|  .+        .           .....++-+|++|+
T Consensus        71 ~~~~~g~~hi~f~V~~~~dld~~~~~l~~~----G~~~~~~~--~~--------~-----------~g~~~~~~~DPdG~  125 (160)
T 3r4q_A           71 RHGAVGQGHFCFYADDKAEVDEWKTRFEAL----EIPVEHYH--RW--------P-----------NGSYSVYIRDPAGN  125 (160)
T ss_dssp             CCEEEEECEEEEEESSHHHHHHHHHHHHTT----TCCCCEEE--EC--------T-----------TSCEEEEEECTTCC
T ss_pred             cCCCcceeEEEEEeCCHHHHHHHHHHHHHC----CCEEeccc--cc--------c-----------CCcEEEEEECCCCC
Confidence            11346789999999   9999999999999    99887422  21        0           01235677899999


Q ss_pred             EEEEEccccC
Q 013898          362 LLQIFTKPVG  371 (434)
Q Consensus       362 llqifT~~~~  371 (434)
                      ++++++.|.+
T Consensus       126 ~iel~~~~~~  135 (160)
T 3r4q_A          126 SVEVGEGKLW  135 (160)
T ss_dssp             EEEEEEGGGG
T ss_pred             EEEEEeCCCC
Confidence            9999998865

>1xqa_A Glyoxalase/bleomycin resistance protein; dioxygenase, structural GEN midwest center for structural genomics, MCSG; HET: P6G; 1.80A {Bacillus cereus atcc 14579} SCOP: d.32.1.2

Probab=99.03  E-value=1.5e-09  Score=89.07  Aligned_cols=109  Identities=13%  Similarity=0.189  Sum_probs=78.3

Q ss_pred             eeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhc
Q 013898          207 RRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHN  286 (434)
Q Consensus       207 ~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~  286 (434)
                      ++|+|+++.|+|++++.+||+++|||+......   .       ...++..+ +...|.|.+...   .           
T Consensus         2 ~~i~hv~l~v~D~~~a~~FY~~~lG~~~~~~~~---~-------~~~~~~~~-~~~~l~l~~~~~---~-----------   56 (113)
T 1xqa_A            2 MGIKHLNLTVADVVAAREFLEKYFGLTCSGTRG---N-------AFAVMRDN-DGFILTLMKGKE---V-----------   56 (113)
T ss_dssp             CCCCEEEEEESCHHHHHHHHHHHHCCEEEEEET---T-------TEEEEECT-TCCEEEEEECSS---C-----------
T ss_pred             CeeEEEEEEeCCHHHHHHHHHHhCCCEEeccCC---C-------cEEEEEcC-CCcEEEEEeCCC---C-----------
Confidence            468999999999999999999999999875421   0       11233333 346677765421   0           


Q ss_pred             CCCCceEEEEEe---CCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEE
Q 013898          287 EGAGVQHLALVS---EDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLL  363 (434)
Q Consensus       287 ~G~GvqHIAf~v---dDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~ll  363 (434)
                      ..+|.+|++|.|   +|+++++++|+++    |+++.. | ... .                    ...++-+|++|+++
T Consensus        57 ~~~~~~~~~~~v~~~~d~~~~~~~l~~~----G~~~~~-p-~~~-~--------------------~~~~~~~DPdG~~i  109 (113)
T 1xqa_A           57 QYPKTFHVGFPQESEEQVDKINQRLKED----GFLVEP-P-KHA-H--------------------AYTFYVEAPGGFTI  109 (113)
T ss_dssp             CCCTTCCEEEECSSHHHHHHHHHHHHHT----TCCCCC-C-EEC----------------------CEEEEEEETTTEEE
T ss_pred             CCCceeEEEEEcCCHHHHHHHHHHHHHC----CCEEec-C-cCC-C--------------------cEEEEEECCCCcEE
Confidence            135799999999   8999999999999    998753 3 321 0                    13556788899999


Q ss_pred             EEEc
Q 013898          364 QIFT  367 (434)
Q Consensus       364 qifT  367 (434)
                      ++++
T Consensus       110 el~~  113 (113)
T 1xqa_A          110 EVMC  113 (113)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            8873

>1t47_A 4-hydroxyphenylpyruvate dioxygenase; triketone inhibitor, iron, oxidoreductase; HET: NTD; 2.50A {Streptomyces avermitilis} SCOP: d.32.1.3 d.32.1.3

Probab=99.02  E-value=1.1e-09  Score=110.73  Aligned_cols=106  Identities=18%  Similarity=0.188  Sum_probs=81.5

Q ss_pred             cceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCch----H
Q 013898          204 YGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQ----I  279 (434)
Q Consensus       204 ~~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~----i  279 (434)
                      +.+.+++||.+.|+|++++++||+++|||++......+.   ......+..+..  +.+.|.|+++..   +.+.    +
T Consensus        18 ~~i~~i~hV~i~V~D~~~a~~FY~~~LGf~~~~~~~~~~---~~~~~~~~~~~~--g~~~l~l~~~~~---~~~~~~~~~   89 (381)
T 1t47_A           18 FPVKGMDAVVFAVGNAKQAAHYYSTAFGMQLVAYSGPEN---GSRETASYVLTN--GSARFVLTSVIK---PATPWGHFL   89 (381)
T ss_dssp             SCCCEEEEEEEECSCHHHHHHHHHHTSCCEEEEEESGGG---TCCSEEEEEEEE--TTEEEEEEEESS---CCSHHHHHH
T ss_pred             CcCceEEEEEEEECCHHHHHHHHHHcCCCEEEEEEcCCC---CCceEEEEEEec--CCEEEEEecCCC---CCCcchhHH
Confidence            568999999999999999999999999999886532111   111123344443  468899988742   3444    6


Q ss_pred             HHHHhhcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccC
Q 013898          280 QTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPS  322 (434)
Q Consensus       280 ~~fl~~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~  322 (434)
                      ..|+..+ |.|+.||||.|+|+++++++|+++    |++++..
T Consensus        90 ~~~~~~~-g~gv~~iaf~V~D~~~~~~~l~~~----G~~~~~~  127 (381)
T 1t47_A           90 ADHVAEH-GDGVVDLAIEVPDARAAHAYAIEH----GARSVAE  127 (381)
T ss_dssp             HHHHHHH-CSEEEEEEEECSCHHHHHHHHHHT----TCCEEEE
T ss_pred             HHHHHhc-CCceEEEEEEECCHHHHHHHHHHc----CCEEeec
Confidence            7788774 679999999999999999999999    9998864

>2r5v_A PCZA361.1; dioxygenase, non-heme iron, vancomycin, oxidoreductase; HET: HHH; 2.30A {Amycolatopsis orientalis}

Probab=99.02  E-value=2.7e-09  Score=106.57  Aligned_cols=111  Identities=18%  Similarity=0.251  Sum_probs=84.0

Q ss_pred             CCCcceEEEEEEEeC--CHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEe--CCEEEEEEcCCCCCCCcccccCCC
Q 013898           27 RFRVNRFHHVEFWCT--DATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRS--GDLRFVFTAPYSPSISDAADAGNS  102 (434)
Q Consensus        27 ~~~i~~l~HI~~~V~--da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~--G~i~~vl~~p~~~~~~~~~~~~~~  102 (434)
                      ...+++|+||.+.|+  |++++++||+++|||++..+....+......+.++..  |.+.|.|+++.....         
T Consensus       153 ~~~~~~l~Hv~l~V~~~D~~~~~~FY~~vLGf~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~l~~~~~~~~---------  223 (357)
T 2r5v_A          153 DVDLLGIDHFAICLNAGDLGPTVEYYERALGFRQIFDEHIVVGAQAMNSTVVQSASGAVTLTLIEPDRNAD---------  223 (357)
T ss_dssp             TCCCCEEEEEEEECCTTCHHHHHHHHHHHHCCEEEEEEEEEETTEEEEEEEEECTTSCCEEEEEEECTTSB---------
T ss_pred             CCCcceEeEEEEEEchhhHHHHHHHHHHhcCCcEEEEEeeccCCcceEEEEEECCCCCEEEEEeeecCCCC---------
Confidence            356899999999999  9999999999999999886542111112234555665  568899887643210         


Q ss_pred             CCCCCCCChhHHhHHHHhc-CCceeEEEEEecCHHHHHHHHHHcCCCCCCCCc
Q 013898          103 SASLPTFDHAACRSFAASH-GLAARSIAVEVEDADVAFNTSVAHGAKPSSPPV  154 (434)
Q Consensus       103 ~~~~~~~~~~~~~~~l~~h-G~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~  154 (434)
                              .+++..|+..+ +.|+.||||+|+|+++++++++++|++++..|.
T Consensus       224 --------~~~~~~~~~~~~~~g~~Hiaf~v~Di~~~~~~L~~~Gv~~~~~p~  268 (357)
T 2r5v_A          224 --------PGQIDEFLKDHQGAGVQHIAFNSNDAVRAVKALSERGVEFLKTPG  268 (357)
T ss_dssp             --------CCHHHHHHHHHTSSEEEEEEEECSCHHHHHHHHHHTTCCBCCCCH
T ss_pred             --------CchhHHHHHhcCCCCccEEEEEcCCHHHHHHHHHHcCCCcCCCch
Confidence                    13456777765 569999999999999999999999999877764

>3sk2_A EHPR; antibiotic resistance, griseoluteate-binding protein; HET: GRI; 1.01A {Pantoea agglomerans} PDB: 3sk1_A*

Probab=99.01  E-value=2.3e-09  Score=90.95  Aligned_cols=93  Identities=12%  Similarity=0.049  Sum_probs=69.4

Q ss_pred             CcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEE-eCCEEEEEEcCCCCCCCcccccCCCCCCCC
Q 013898           29 RVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLR-SGDLRFVFTAPYSPSISDAADAGNSSASLP  107 (434)
Q Consensus        29 ~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~-~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~  107 (434)
                      ++.+++||.|.|+|++++++||++.|||++....+        ....+. .++..+.|.....+.               
T Consensus        10 ~~~~i~~v~l~v~D~~~s~~FY~~~lG~~~~~~~~--------~~~~~~~~~~~~l~l~~~~~~~---------------   66 (132)
T 3sk2_A           10 PTITPNLQLVYVSNVERSTDFYRFIFKKEPVFVTP--------RYVAFPSSGDALFAIWSGGEEP---------------   66 (132)
T ss_dssp             CCCCCCEEEEECSCHHHHHHHHHHHHTCCCSEECS--------SEEEEECSTTCEEEEESSSCCC---------------
T ss_pred             CcceeeEEEEEECCHHHHHHHHHHHcCCeEEEcCC--------CEEEEEcCCCcEEEEEeCCCCC---------------
Confidence            46899999999999999999999999999876532        122344 356777776532110               


Q ss_pred             CCChhHHhHHHHhcCCceeEEEEEecC---HHHHHHHHHH---cCCCCCCCCcc
Q 013898          108 TFDHAACRSFAASHGLAARSIAVEVED---ADVAFNTSVA---HGAKPSSPPVI  155 (434)
Q Consensus       108 ~~~~~~~~~~l~~hG~gv~~Iaf~V~D---vd~a~~ra~~---~Ga~~~~~p~~  155 (434)
                                 .....+..+++|.|+|   ++++++++++   +|+++..+|..
T Consensus        67 -----------~~~~~~~~~~~~~v~~~~dv~~~~~~l~~~~~~G~~~~~~p~~  109 (132)
T 3sk2_A           67 -----------VAEIPRFSEIGIMLPTGEDVDKLFNEWTKQKSHQIIVIKEPYT  109 (132)
T ss_dssp             -----------CTTSCCCEEEEEEESSHHHHHHHHHHHHHCSSSCCEEEEEEEE
T ss_pred             -----------cCCCCCcceEEEEeCCHHHHHHHHHHHHhhhcCCCEEeeCCcc
Confidence                       0122466789999986   9999999999   99987666544

>3vw9_A Lactoylglutathione lyase; glyoxalase, lyase-lyase inhibitor complex; HET: EPE HPJ; 1.47A {Homo sapiens} PDB: 1qip_A* 1fro_A* 1qin_A* 1bh5_A* 2za0_A*

Probab=99.01  E-value=1.4e-09  Score=97.87  Aligned_cols=132  Identities=16%  Similarity=0.132  Sum_probs=84.8

Q ss_pred             CCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCC-------------------EEEEEEcC
Q 013898           28 FRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGD-------------------LRFVFTAP   88 (434)
Q Consensus        28 ~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~-------------------i~~vl~~p   88 (434)
                      ....+|+||.|.|+|++++++||+++|||++..+...+.+.  ...+.+..++                   ..+.|...
T Consensus        30 ~~~~~l~Hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~  107 (187)
T 3vw9_A           30 TKDFLLQQTMLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMK--FSLYFLAYEDKNDIPKEKDEKIAWALSRKATLELTHN  107 (187)
T ss_dssp             GTTCEEEEEEEECSCHHHHHHHHHHTTCCEEEEEEEETTTT--EEEEEEESCCGGGSCSSHHHHHHHHTTCSSEEEEEEE
T ss_pred             cceeEEEEEEEEeCCHHHHHHHHHHhcCcEEeeccccCCCc--eeEEEecCCCcccccccccchhhhcccCCceEEEEEe
Confidence            45689999999999999999999999999998765432221  2344444332                   45555432


Q ss_pred             CCCCCCcccccCCCCCCCCCCChhHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEec
Q 013898           89 YSPSISDAADAGNSSASLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLY  168 (434)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~  168 (434)
                      .....  .+     ..+   +..+      ...+.|+.||+|.|+|+++++++++++|++++..|..... ..+..++++
T Consensus       108 ~~~~~--~~-----~~~---~~~g------~~~~~g~~hl~f~v~dv~~~~~~l~~~G~~~~~~~~~~~~-~~~~~~~DP  170 (187)
T 3vw9_A          108 WGTED--DE-----TQS---YHNG------NSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKPDDGKM-KGLAFIQDP  170 (187)
T ss_dssp             TTGGG--CT-----TCC---CCCS------SSSSCBEEEEEEECSCHHHHHHHHHHTTCCEEECTTSSSS-TTCEEEECT
T ss_pred             cCCCC--CC-----ccc---cccC------CCCCCceeEEEEEECCHHHHHHHHHHCCCeEeeCCccCCc-ceEEEEECC
Confidence            21100  00     000   0000      0112388999999999999999999999998777653211 123456677


Q ss_pred             CCeEEEEeec
Q 013898          169 GDVVLRYVSY  178 (434)
Q Consensus       169 Gg~~~~fvd~  178 (434)
                      .|..+.|+++
T Consensus       171 dG~~iel~~~  180 (187)
T 3vw9_A          171 DGYWIEILNP  180 (187)
T ss_dssp             TCCEEEEECG
T ss_pred             CCCEEEEEEc
Confidence            7777777764

>3g12_A Putative lactoylglutathione lyase; glyoxalase, bleomycin resistance, PSI-2, NYSGXRC, structural genomics; 2.58A {Bdellovibrio bacteriovorus HD100}

Probab=99.01  E-value=2.3e-09  Score=91.10  Aligned_cols=113  Identities=8%  Similarity=0.052  Sum_probs=73.1

Q ss_pred             ceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEE-eCCEEEEEEcCCCCCCCcccccCCCCCCCCCC
Q 013898           31 NRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLR-SGDLRFVFTAPYSPSISDAADAGNSSASLPTF  109 (434)
Q Consensus        31 ~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~-~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~  109 (434)
                      ..|+||.|.|+|++++++||++ |||++..... ..+    ....+. .|+..+.|.. ..+.                 
T Consensus         5 ~~i~hv~l~v~D~~~a~~FY~~-LG~~~~~~~~-~~~----~~~~~~~~~~~~l~l~~-~~~~-----------------   60 (128)
T 3g12_A            5 LLITSITINTSHLQGMLGFYRI-IGFQFTASKV-DKG----SEVHRAVHNGVEFSLYS-IQNP-----------------   60 (128)
T ss_dssp             EEEEEEEEEESCHHHHHHHHHH-HTCCCEEC----------CCEEEEEETTEEEEEEE-CCCC-----------------
T ss_pred             ceEEEEEEEcCCHHHHHHHHHH-CCCEEecccC-CCC----CEEEEEeCCCeEEEEEE-CCCC-----------------
Confidence            5799999999999999999999 9999876411 011    123334 5888777743 2110                 


Q ss_pred             ChhHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCC-CCCCCccccCceEEEEEEecCCeEEEEee
Q 013898          110 DHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAK-PSSPPVILDNLAVIAEVQLYGDVVLRYVS  177 (434)
Q Consensus       110 ~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~-~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd  177 (434)
                         .      ....+..+++|.|+|+++++++++++|++ ++.+|........ ..++++.|..+.+.+
T Consensus        61 ---~------~~~~~~~~l~f~v~dvd~~~~~l~~~G~~~~~~~p~~~~~G~~-~~~~DPdGn~iel~~  119 (128)
T 3g12_A           61 ---Q------RSQIPSLQLGFQITDLEKTVQELVKIPGAMCILDPTDMPDGKK-AIVLDPDGHSIELCE  119 (128)
T ss_dssp             ---S------SCCCCSEEEEEEESCHHHHHHHHTTSTTCEEEEEEEECC-CEE-EEEECTTCCEEEEEC
T ss_pred             ---c------CCCCCceEEEEEeCCHHHHHHHHHHCCCceeccCceeCCCccE-EEEECCCCCEEEEEE
Confidence               0      01123358999999999999999999999 7666654322222 344444444444444

>2za0_A Glyoxalase I; lyase, lactoylglutathione lyase, methyl- gerfelin; HET: MGI; 1.70A {Mus musculus} PDB: 1qip_A* 1fro_A* 1qin_A* 1bh5_A*

Probab=99.01  E-value=1.9e-09  Score=96.95  Aligned_cols=130  Identities=14%  Similarity=0.100  Sum_probs=82.6

Q ss_pred             CCCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEe-------------------CCEEEEEEc
Q 013898           27 RFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRS-------------------GDLRFVFTA   87 (434)
Q Consensus        27 ~~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~-------------------G~i~~vl~~   87 (434)
                      .+.+++++||.|.|+|++++++||+++|||++..+...+.+  ....+.+..                   ++..+.|..
T Consensus        26 ~~~~~~i~hv~l~v~Dl~~a~~FY~~~LG~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~L~~  103 (184)
T 2za0_A           26 STKDFLLQQTMLRIKDPKKSLDFYTRVLGLTLLQKLDFPAM--KFSLYFLAYEDKNDIPKDKSEKTAWTFSRKATLELTH  103 (184)
T ss_dssp             GGTTCEEEEEEEECSCHHHHHHHHHHTTCCEEEEEEEEGGG--TEEEEEEESCCGGGSCSSHHHHHHHHTTSSSEEEEEE
T ss_pred             CccceeEEEEEEEeCCHHHHHHHHHHhcCCEEEEeccCCCC--CceeEEecccccccCCcccchheeeecCCCceEEEEe
Confidence            34578999999999999999999999999998875421111  123333443                   235666654


Q ss_pred             CCCCCCCcccccCCCCCCCCCCChhHHhHHHHhc--CCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCceEEEEE
Q 013898           88 PYSPSISDAADAGNSSASLPTFDHAACRSFAASH--GLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEV  165 (434)
Q Consensus        88 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h--G~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i  165 (434)
                      ......  .|                ...|...+  ..|+.||+|.|+|+++++++++++|++++.+|..... .....+
T Consensus       104 ~~~~~~--~~----------------~~~~~~~~~~~~g~~hi~f~v~dvd~~~~~l~~~G~~~~~~p~~~~~-~~~~~~  164 (184)
T 2za0_A          104 NWGTED--DE----------------TQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKPDDGKM-KGLAFI  164 (184)
T ss_dssp             ETTGGG--CT----------------TCCCCCSSSSSCCEEEEEEECSCHHHHHHHHHHTTCCEEECTTSSSS-TTCEEE
T ss_pred             cCCCCC--Cc----------------ccccccCCCCCCCeeEEEEEeCCHHHHHHHHHHCCCeeecCCcCCCc-eeEEEE
Confidence            321100  00                00111112  2478899999999999999999999998776653211 123345


Q ss_pred             EecCCeEEEEee
Q 013898          166 QLYGDVVLRYVS  177 (434)
Q Consensus       166 ~~~Gg~~~~fvd  177 (434)
                      +++.|..+.|++
T Consensus       165 ~DPdG~~iel~~  176 (184)
T 2za0_A          165 QDPDGYWIEILN  176 (184)
T ss_dssp             ECTTCCEEEEEC
T ss_pred             ECCCCCEEEEEe
Confidence            566666666665

>2pjs_A AGR_C_3564P, uncharacterized protein ATU1953; glyoxalase/bleomycin resistance protein/dioxygenase superfamily, structural genomics; 1.85A {Agrobacterium tumefaciens str} SCOP: d.32.1.2

Probab=99.00  E-value=1.2e-09  Score=90.44  Aligned_cols=114  Identities=22%  Similarity=0.247  Sum_probs=78.7

Q ss_pred             cceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcC-CCceEEEecccCCCCCCCchHHHH
Q 013898          204 YGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANN-DEMVLLPMNEPVFGTKRKSQIQTY  282 (434)
Q Consensus       204 ~~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~-~g~v~i~L~e~~~g~~~~s~i~~f  282 (434)
                      +.++++ |+.+.|+|++++++||+++|||+.....     +     . ...+..+ .+.+.|.+..+..           
T Consensus         4 m~i~~i-~v~l~v~d~~~a~~FY~~~lG~~~~~~~-----~-----~-~~~~~~~~~~~~~l~l~~~~~-----------   60 (119)
T 2pjs_A            4 MAVRRV-VANIATPEPARAQAFYGDILGMPVAMDH-----G-----W-IVTHASPLEAHAQVSFAREGG-----------   60 (119)
T ss_dssp             -CEEEE-EEEEECSCGGGGHHHHTTTTCCCEEEEC-----S-----S-EEEEEEEEEEEEEEEEESSSB-----------
T ss_pred             cceeEE-EEEEEcCCHHHHHHHHHHhcCCEEEecC-----C-----E-EEEEecCCCCcEEEEEEcCCC-----------
Confidence            457899 9999999999999999999999987531     1     1 1112221 1245666654320           


Q ss_pred             HhhcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceE
Q 013898          283 LEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTL  362 (434)
Q Consensus       283 l~~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~l  362 (434)
                          ...+..|++|.|+|+++++++|+++    |++++.. |...        +           .....++-+|++|++
T Consensus        61 ----~~~~~~~~~~~v~d~~~~~~~l~~~----G~~~~~~-~~~~--------~-----------~g~~~~~~~DPdG~~  112 (119)
T 2pjs_A           61 ----SGTDVPDLSIEVDNFDEVHARILKA----GLPIEYG-PVTE--------A-----------WGVQRLFLRDPFGKL  112 (119)
T ss_dssp             ----TTBCCCSEEEEESCHHHHHHHHHHT----TCCCSEE-EEEC--------T-----------TSCEEEEEECTTSCE
T ss_pred             ----CCCceeEEEEEECCHHHHHHHHHHC----CCccccC-CccC--------C-----------CccEEEEEECCCCCE
Confidence                1245789999999999999999999    9988753 2221        0           011355778889998


Q ss_pred             EEEEcc
Q 013898          363 LQIFTK  368 (434)
Q Consensus       363 lqifT~  368 (434)
                      +++++.
T Consensus       113 iel~~~  118 (119)
T 2pjs_A          113 INILSH  118 (119)
T ss_dssp             EEEEEC
T ss_pred             EEEEec
Confidence            888764

>2kjz_A ATC0852; protein of unknown function, dimer, structural genomics, PSI protein structure initiative; NMR {Agrobacterium tumefaciens}

Probab=98.98  E-value=3e-09  Score=92.18  Aligned_cols=116  Identities=15%  Similarity=0.088  Sum_probs=79.5

Q ss_pred             CcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeC-CEEEEEEcCCCCCCCcccccCCCCCCCC
Q 013898           29 RVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSG-DLRFVFTAPYSPSISDAADAGNSSASLP  107 (434)
Q Consensus        29 ~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G-~i~~vl~~p~~~~~~~~~~~~~~~~~~~  107 (434)
                      .+.+++||.|.|+|++++++||+++|||++..+.+        ....++.+ +..|.|.......    |        . 
T Consensus        22 ~m~~l~hv~l~v~Dl~~a~~FY~~~LG~~~~~~~~--------~~~~~~~~~~~~l~l~~~~~~~----~--------~-   80 (144)
T 2kjz_A           22 HMTHPDFTILYVDNPPASTQFYKALLGVDPVESSP--------TFSLFVLANGMKLGLWSRHTVE----P--------K-   80 (144)
T ss_dssp             -CCCCCEEEEEESCHHHHHHHHHHHHTCCCSEEET--------TEEEEECTTSCEEEEEETTSCS----S--------C-
T ss_pred             ccCceeEEEEEeCCHHHHHHHHHHccCCEeccCCC--------CeEEEEcCCCcEEEEEeCCCCC----C--------c-
Confidence            35699999999999999999999999999876542        12445555 5677775422100    0        0 


Q ss_pred             CCChhHHhHHHHhcCCceeEEEEEec---CHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEee
Q 013898          108 TFDHAACRSFAASHGLAARSIAVEVE---DADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVS  177 (434)
Q Consensus       108 ~~~~~~~~~~l~~hG~gv~~Iaf~V~---Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd  177 (434)
                                 ...+.+..+|+|.|+   |+++++++++++|++++.+|...... ....++++.|..+.|++
T Consensus        81 -----------~~~~~~~~hl~f~v~d~~dv~~~~~~l~~~G~~~~~~~~~~~~g-~~~~~~DPdG~~iel~~  141 (144)
T 2kjz_A           81 -----------ASVTGGGGELAFRVENDAQVDETFAGWKASGVAMLQQPAKMEFG-YTFTAADPDSHRLRVYA  141 (144)
T ss_dssp             -----------CCCSSSSCEEEEECSSHHHHHHHHHHHHHTTCCCCSCCEEETTE-EEEEECCTTCCEEEEEE
T ss_pred             -----------cCCCCCceEEEEEeCCHHHHHHHHHHHHHCCCeEecCceecCCc-eEEEEECCCCCEEEEEe
Confidence                       123356779999997   58999999999999987776543222 33445555555666554

>3zw5_A Glyoxalase domain-containing protein 5; lyase; 1.60A {Homo sapiens}

Probab=98.98  E-value=2.8e-09  Score=92.32  Aligned_cols=123  Identities=17%  Similarity=0.214  Sum_probs=80.1

Q ss_pred             cceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHH
Q 013898          204 YGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYL  283 (434)
Q Consensus       204 ~~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl  283 (434)
                      +.+++|+||++.|+|++++++||+++|||+......    .     .  ..+..++.  .+.|........+.       
T Consensus        23 m~i~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~----~-----~--~~l~~g~~--~l~l~~~~~~~~~~-------   82 (147)
T 3zw5_A           23 MLIRRLDHIVMTVKSIKDTTMFYSKILGMEVMTFKE----D-----R--KALCFGDQ--KFNLHEVGKEFEPK-------   82 (147)
T ss_dssp             TSCEEEEEEEEEESCHHHHHHHHHHHHCCEEEEETT----T-----E--EEEEETTE--EEEEEETTSCCSSC-------
T ss_pred             eecccccEEEEEeCCHHHHHHHHHHhcCCEEEecCC----C-----c--eEEEECCc--EEEEEEcCCCcCcc-------
Confidence            568999999999999999999999999999875311    1     1  12333333  44443321100000       


Q ss_pred             hhcCCCCceEEEEEeC-CHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceE
Q 013898          284 EHNEGAGVQHLALVSE-DIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTL  362 (434)
Q Consensus       284 ~~~~G~GvqHIAf~vd-DI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~l  362 (434)
                      .....+|..|++|.++ |+++++++|+++    |+++...| ...       .+.         .-....+|-+|++|++
T Consensus        83 ~~~~~~g~~~~~~~~~~dl~~~~~~l~~~----G~~~~~~p-~~~-------~~~---------~g~~~~~~~~DPdGn~  141 (147)
T 3zw5_A           83 AAHPVPGSLDICLITEVPLEEMIQHLKAC----DVPIEEGP-VPR-------TGA---------KGPIMSIYFRDPDRNL  141 (147)
T ss_dssp             CSSCCTTCCEEEEECSSCHHHHHHHHHHT----TCCCCEEE-EEE-------EET---------TEEEEEEEEECTTCCE
T ss_pred             cCCCCCCCceEEEEeccCHHHHHHHHHHc----CCceeeCc-ccc-------cCC---------CCceEEEEEECCCCCE
Confidence            0124567889999996 999999999999    99887543 221       110         0001245778899998


Q ss_pred             EEEEc
Q 013898          363 LQIFT  367 (434)
Q Consensus       363 lqifT  367 (434)
                      +++.+
T Consensus       142 iEl~~  146 (147)
T 3zw5_A          142 IEVSN  146 (147)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence            88764

>1xrk_A Bleomycin resistance protein; arm exchange, ligand binding protein, thermostable mutant, antibiotic inhibitor; HET: BLM; 1.50A {Streptoalloteichus hindustanus} SCOP: d.32.1.2 PDB: 2zhp_A* 1byl_A

Probab=98.97  E-value=1e-08  Score=86.05  Aligned_cols=109  Identities=12%  Similarity=-0.043  Sum_probs=76.1

Q ss_pred             ceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCC
Q 013898           31 NRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFD  110 (434)
Q Consensus        31 ~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~  110 (434)
                      ....||.+.|+|++++++||++.|||++....+   +     ...++.|+..+.|......                   
T Consensus         4 ~~~~~~~l~v~D~~~a~~FY~~~lG~~~~~~~~---~-----~~~~~~~~~~l~l~~~~~~-------------------   56 (124)
T 1xrk_A            4 LTSAVPVLTARDVAEAVEFWTDRLGFSRVFVED---D-----FAGVVRDDVTLFISAVQDQ-------------------   56 (124)
T ss_dssp             EEEEEEEEEESCHHHHHHHHHHTTCCEEEEECS---S-----EEEEEETTEEEEEEECSCT-------------------
T ss_pred             ccceeEEEEcCCHHHHHHHHHHccCceEEecCC---C-----EEEEEECCEEEEEEcCCCC-------------------
Confidence            456799999999999999999999999987521   1     2345678888877652110                   


Q ss_pred             hhHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHc------CC--CCCCCCccccCceEEEEEEecCCeEEEEee
Q 013898          111 HAACRSFAASHGLAARSIAVEVEDADVAFNTSVAH------GA--KPSSPPVILDNLAVIAEVQLYGDVVLRYVS  177 (434)
Q Consensus       111 ~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~------Ga--~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd  177 (434)
                               .. .+..+++|.|+|+++++++++++      |+  +++.+|...... ....++.+.|..+.|.+
T Consensus        57 ---------~~-~~~~~~~~~v~dv~~~~~~l~~~~~~~~~G~~~~~~~~~~~~~~g-~~~~~~DPdG~~iel~~  120 (124)
T 1xrk_A           57 ---------VV-PDNTQAWVWVRGLDELYAEWSEVVSTNFRDASGPAMTEIVEQPWG-REFALRDPAGNCVHFVA  120 (124)
T ss_dssp             ---------TT-GGGCEEEEEEECHHHHHHHHTTTSBSCTTTCSSCEECCCEEETTE-EEEEEECTTCCEEEEEE
T ss_pred             ---------CC-CCceEEEEEECCHHHHHHHHHHhcccccCCccccccCCceecCCC-CEEEEECCCCCEEEEEE
Confidence                     01 12248999999999999999999      99  766666543222 34445555555555554

>1cjx_A 4-hydroxyphenylpyruvate dioxygenase; oxidoreductase, iron; 2.40A {Pseudomonas fluorescens} SCOP: d.32.1.3 d.32.1.3

Probab=98.97  E-value=3.7e-09  Score=105.76  Aligned_cols=109  Identities=12%  Similarity=0.086  Sum_probs=82.1

Q ss_pred             CCCCcceEEEEEEEeC--CHHHHHHHHHHhcCCcEEEEecCCCCceeE--EEEEEEeCCEEEEEEcC-CCCCCCcccccC
Q 013898           26 DRFRVNRFHHVEFWCT--DATNTARRFSWGLGMPIVAKSDLSTGNTVH--ASYLLRSGDLRFVFTAP-YSPSISDAADAG  100 (434)
Q Consensus        26 ~~~~i~~l~HI~~~V~--da~~a~~fy~~~lGf~~v~~~~~~~g~~~~--~~~~l~~G~i~~vl~~p-~~~~~~~~~~~~  100 (434)
                      ....+.+|+||.+.|+  |++++++||+++|||++......++.....  .......|.+.|.|+++ ....        
T Consensus       152 ~~~~i~~idHv~l~V~~~dl~~a~~FY~~vLGf~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~~~~~~~--------  223 (357)
T 1cjx_A          152 VGAGLKVIDHLTHNVYRGRMVYWANFYEKLFNFREARYFDIKGEYTGLTSKAMSAPDGMIRIPLNEESSKGA--------  223 (357)
T ss_dssp             CTTSEEEEEEECEECCTTHHHHHHHHHHHHHCCEEEEEEEEECSSCEEEEEEEECTTSSCEEEEEEECTTCC--------
T ss_pred             CCCCeeEECceEEeechhhHHHHHHHHHHhhCCceeeEEEeccCCcceEEEEEECCCCCEEEEEeeecCCCC--------
Confidence            3457899999999999  999999999999999988764322211112  12233457889999886 3221        


Q ss_pred             CCCCCCCCCChhHHhHHHHh-cCCceeEEEEEecCHHHHHHHHHHcCCCCCC-CC
Q 013898          101 NSSASLPTFDHAACRSFAAS-HGLAARSIAVEVEDADVAFNTSVAHGAKPSS-PP  153 (434)
Q Consensus       101 ~~~~~~~~~~~~~~~~~l~~-hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~-~p  153 (434)
                                 +++.+|+.. .+.|++||||.|+|+++++++++++|++++. .|
T Consensus       224 -----------~~~~~~~~~~~g~g~~HiAf~v~Di~~~~~~L~~~Gv~~~~~~p  267 (357)
T 1cjx_A          224 -----------GQIEEFLMQFNGEGIQHVAFLTDDLVKTWDALKKIGMRFMTAPP  267 (357)
T ss_dssp             -----------SHHHHHHHHHTSSBCCEEEEEESCHHHHHHHHHHTTCCBCCCCC
T ss_pred             -----------ChHHHhHHhcCCCCeeEEEEEcCCHHHHHHHHHHcCCcccCCCC
Confidence                       356677765 4579999999999999999999999999877 55

>2a4x_A Mitomycin-binding protein; ALFA/beta protein, mitomycin C-binding protein, bleomycin A2, antimicrobial protein; HET: BLM; 1.40A {Streptomyces caespitosus} SCOP: d.32.1.2 PDB: 2a4w_A* 1kmz_A 1kll_A*

Probab=98.95  E-value=2.6e-09  Score=91.21  Aligned_cols=122  Identities=17%  Similarity=0.118  Sum_probs=77.1

Q ss_pred             cceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEe-CCEEEEEEcCCCCCCCcccccCCCCCCCCC
Q 013898           30 VNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRS-GDLRFVFTAPYSPSISDAADAGNSSASLPT  108 (434)
Q Consensus        30 i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~-G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~  108 (434)
                      +++++||.|.|+|++++++||++ |||++..+..  .+    ....++. |+..|.|.......                
T Consensus         2 ~~~l~hv~l~v~D~~~a~~FY~~-LG~~~~~~~~--~~----~~~~~~~~~~~~l~l~~~~~~~----------------   58 (138)
T 2a4x_A            2 SARISLFAVVVEDMAKSLEFYRK-LGVEIPAEAD--SA----PHTEAVLDGGIRLAWDTVETVR----------------   58 (138)
T ss_dssp             CCEEEEEEEEESCHHHHHHHHHT-TTCCCCGGGG--GC----SEEEEECTTSCEEEEEEHHHHH----------------
T ss_pred             cceeeEEEEEECCHHHHHHHHHH-cCCcEEecCC--CC----ceEEEEcCCCeEEEEecCccch----------------
Confidence            46899999999999999999998 9999775422  11    1233444 77777776421000                


Q ss_pred             CChhHHhHHHHhcCCceeEEEEEec---CHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEee
Q 013898          109 FDHAACRSFAASHGLAARSIAVEVE---DADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVS  177 (434)
Q Consensus       109 ~~~~~~~~~l~~hG~gv~~Iaf~V~---Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd  177 (434)
                         ..........+.+..+++|.|+   |+++++++++++|+++..+|...........++++.|..+.+++
T Consensus        59 ---~~~~~~~~~~~~~~~~l~f~v~~~~dv~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~iel~~  127 (138)
T 2a4x_A           59 ---SYDPEWQAPTGGHRFAIAFEFPDTASVDKKYAELVDAGYEGHLKPWNAVWGQRYAIVKDPDGNVVDLFA  127 (138)
T ss_dssp             ---HHCTTCCCCBSSCSEEEEEECSSHHHHHHHHHHHHHTTCCEEEEEEEETTTEEEEEEECTTCCEEEEEE
T ss_pred             ---hhCcccCCCCCCCeEEEEEEeCCHHHHHHHHHHHHHCCCceeeCCcccCCCcEEEEEECCCCCEEEEEe
Confidence               0000000123457789999999   99999999999999876655433222233344444444555544

>2r6u_A Uncharacterized protein; structural genomics, PSI-2, RHA04853, MCSG, protein structur initiative, midwest center for structural genomics; 1.50A {Rhodococcus SP}

Probab=98.94  E-value=1.3e-09  Score=95.17  Aligned_cols=122  Identities=15%  Similarity=0.088  Sum_probs=78.2

Q ss_pred             cceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCC
Q 013898           30 VNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTF  109 (434)
Q Consensus        30 i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~  109 (434)
                      ..+++||.|.|+|++++++||+++|||++....+   .    ....++.|+..+.|..+..+..           ..   
T Consensus        23 ~~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~---~----~~~~~~~~~~~~~l~~~~~~~~-----------~~---   81 (148)
T 2r6u_A           23 TGRIVHFEIPFDDGDRARAFYRDAFGWAIAEIPD---M----DYSMVTTGPVGESGMPDEPGYI-----------NG---   81 (148)
T ss_dssp             CCCEEEEEEEESSHHHHHHHHHHHHCCEEEEETT---T----TEEEEECSCBCTTSSBCSSSCB-----------CE---
T ss_pred             CCceEEEEEEeCCHHHHHHHHHHccCcEEEECCC---C----CEEEEEeCCcceeecccCCccc-----------cc---
Confidence            3689999999999999999999999999887421   1    1344555654433322211000           00   


Q ss_pred             ChhHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEeec
Q 013898          110 DHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSY  178 (434)
Q Consensus       110 ~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd~  178 (434)
                        . +.  ....+.++ +++|.|+|+++++++++++|+++..+|....+.-....++++.|..+.|+++
T Consensus        82 --~-l~--~~~~~~g~-~l~f~v~dld~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~DPdG~~iel~~~  144 (148)
T 2r6u_A           82 --G-MM--QRGEVTTP-VVTVDVESIESALERIESLGGKTVTGRTPVGNMGFAAYFTDSEGNVVGLWET  144 (148)
T ss_dssp             --E-EE--ESSSSCSC-EEEEECSCHHHHHHHHHHTTCEEEEEEEEETTTEEEEEEECTTSCEEEEEEE
T ss_pred             --c-ee--ecCCCCeE-EEEEEcCCHHHHHHHHHHcCCeEecCCeecCCCEEEEEEECCCCCEEEEEec
Confidence              0 00  00011355 8999999999999999999998776664432212445566677777777664

>3ct8_A Protein BH2160, putative glyoxalase; NP_243026.1, glyoxalase/bleomycin resis protein/dioxygenase superfamily, structural genomics; HET: UNL; 2.10A {Bacillus halodurans c-125}

Probab=98.94  E-value=1.3e-08  Score=88.34  Aligned_cols=94  Identities=14%  Similarity=0.086  Sum_probs=69.4

Q ss_pred             CcceEEEEEEEeCCHHHHHHHH---HHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCC
Q 013898           29 RVNRFHHVEFWCTDATNTARRF---SWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSAS  105 (434)
Q Consensus        29 ~i~~l~HI~~~V~da~~a~~fy---~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~  105 (434)
                      .+.+++||.|.|+|++++++||   ++.|||++.....  .+    . .++. |+..|.|..+..+..         ..+
T Consensus        17 ~~~~i~hv~l~v~Dl~~a~~FY~~~~~~LG~~~~~~~~--~~----~-~~~~-g~~~l~l~~~~~~~~---------~~~   79 (146)
T 3ct8_A           17 FQGMLHHVEINVDHLEESIAFWDWLLGELGYEDYQSWS--RG----K-SYKH-GKTYLVFVQTEDRFQ---------TPT   79 (146)
T ss_dssp             TTTSCCEEEEEESCHHHHHHHHHHHHHHTTCEEEEEET--TE----E-EEEE-TTEEEEEEECCGGGS---------CSC
T ss_pred             cccceeEEEEEeCCHHHHHHHHHhhhhhCCCEEEEecC--CC----c-eEec-CCeEEEEEEcCCCcc---------ccc
Confidence            5889999999999999999999   9999999887643  11    1 2334 888888876421000         000


Q ss_pred             CCCCChhHHhHHHHhcCCceeEEEEEec---CHHHHHHHHHHcCCCCCC
Q 013898          106 LPTFDHAACRSFAASHGLAARSIAVEVE---DADVAFNTSVAHGAKPSS  151 (434)
Q Consensus       106 ~~~~~~~~~~~~l~~hG~gv~~Iaf~V~---Dvd~a~~ra~~~Ga~~~~  151 (434)
                      .            ...+.|+.+|+|.|+   |+++++++++++|+++..
T Consensus        80 ~------------~~~~~g~~hi~f~v~~~~dv~~~~~~l~~~G~~~~~  116 (146)
T 3ct8_A           80 F------------HRKRTGLNHLAFHAASREKVDELTQKLKERGDPILY  116 (146)
T ss_dssp             C------------CTTSSSCCEEEEECSCHHHHHHHHHHHHHHTCCBCC
T ss_pred             c------------cccCCCceEEEEECCCHHHHHHHHHHHHHcCCcccc
Confidence            0            012247789999999   999999999999999876

>2i7r_A Conserved domain protein; structural genomics conserved domain, PSI-2, protein structure initiative; 2.20A {Streptococcus pneumoniae} SCOP: d.32.1.2

Probab=98.92  E-value=4.5e-09  Score=87.01  Aligned_cols=114  Identities=12%  Similarity=0.149  Sum_probs=74.7

Q ss_pred             eeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhh
Q 013898          206 IRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEH  285 (434)
Q Consensus       206 l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~  285 (434)
                      +++++|+.+.|+|++++++||+++|||+.....+    .     .  ..+..++  ..+.+.....  .+.        .
T Consensus         3 ~m~i~~v~l~v~D~~~a~~FY~~~lG~~~~~~~~----~-----~--~~~~~~~--~~l~l~~~~~--~~~--------~   59 (118)
T 2i7r_A            3 AMNLNQLDIIVSNVPQVCADLEHILDKKADYAND----G-----F--AQFTIGS--HCLMLSQNHL--VPL--------E   59 (118)
T ss_dssp             -CEEEEEEEECSCHHHHHHHHHHHHTSCCSEEET----T-----E--EEEEETT--EEEEEESSCS--SSC--------C
T ss_pred             cceeeEEEEEeCCHHHHHHHHHHHhCCeeEEeCC----C-----E--EEEEeCC--eEEEEEcCCC--CCc--------c
Confidence            4689999999999999999999999999875321    1     1  1223322  2344422110  000        1


Q ss_pred             cCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEEE
Q 013898          286 NEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQI  365 (434)
Q Consensus       286 ~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llqi  365 (434)
                      ..+.|+ |++|.|+|+++++++|+++    |++++.. |...        +           .....++-+|++|+++++
T Consensus        60 ~~~~~~-~~~~~v~d~~~~~~~l~~~----G~~~~~~-~~~~--------~-----------~g~~~~~~~DPdG~~iel  114 (118)
T 2i7r_A           60 NFQSGI-IIHIEVEDVDQNYKRLNEL----GIKVLHG-PTVT--------D-----------WGTESLLVQGPAGLVLDF  114 (118)
T ss_dssp             CCCSCE-EEEEECSCHHHHHHHHHHH----TCCEEEE-EEEC--------T-----------TSCEEEEEECGGGCEEEE
T ss_pred             cCCCeE-EEEEEECCHHHHHHHHHHC----CCceecC-Cccc--------c-----------CccEEEEEECCCccEEEE
Confidence            124555 8999999999999999999    9998753 2321        0           011244667888988888


Q ss_pred             Ec
Q 013898          366 FT  367 (434)
Q Consensus       366 fT  367 (434)
                      ++
T Consensus       115 ~~  116 (118)
T 2i7r_A          115 YR  116 (118)
T ss_dssp             EE
T ss_pred             Ee
Confidence            75

>1xqa_A Glyoxalase/bleomycin resistance protein; dioxygenase, structural GEN midwest center for structural genomics, MCSG; HET: P6G; 1.80A {Bacillus cereus atcc 14579} SCOP: d.32.1.2

Probab=98.91  E-value=9.6e-09  Score=84.19  Aligned_cols=106  Identities=12%  Similarity=0.094  Sum_probs=72.4

Q ss_pred             ceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEe-CCEEEEEEcCCCCCCCcccccCCCCCCCCCC
Q 013898           31 NRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRS-GDLRFVFTAPYSPSISDAADAGNSSASLPTF  109 (434)
Q Consensus        31 ~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~-G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~  109 (434)
                      ++++||.+.|+|++++.+||++.|||++....+  .     ....++. ++..|.+..+...                  
T Consensus         2 ~~i~hv~l~v~D~~~a~~FY~~~lG~~~~~~~~--~-----~~~~~~~~~~~~l~l~~~~~~------------------   56 (113)
T 1xqa_A            2 MGIKHLNLTVADVVAAREFLEKYFGLTCSGTRG--N-----AFAVMRDNDGFILTLMKGKEV------------------   56 (113)
T ss_dssp             CCCCEEEEEESCHHHHHHHHHHHHCCEEEEEET--T-----TEEEEECTTCCEEEEEECSSC------------------
T ss_pred             CeeEEEEEEeCCHHHHHHHHHHhCCCEEeccCC--C-----cEEEEEcCCCcEEEEEeCCCC------------------
Confidence            578999999999999999999999999886542  1     1234444 4566777642110                  


Q ss_pred             ChhHHhHHHHhcCCceeEEEEEe---cCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEE
Q 013898          110 DHAACRSFAASHGLAARSIAVEV---EDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRY  175 (434)
Q Consensus       110 ~~~~~~~~l~~hG~gv~~Iaf~V---~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~f  175 (434)
                                 ...+..|++|.|   +|+++++++++++|+++. +|... + .....++++.|..+.+
T Consensus        57 -----------~~~~~~~~~~~v~~~~d~~~~~~~l~~~G~~~~-~p~~~-~-~~~~~~~DPdG~~iel  111 (113)
T 1xqa_A           57 -----------QYPKTFHVGFPQESEEQVDKINQRLKEDGFLVE-PPKHA-H-AYTFYVEAPGGFTIEV  111 (113)
T ss_dssp             -----------CCCTTCCEEEECSSHHHHHHHHHHHHHTTCCCC-CCEEC---CEEEEEEETTTEEEEE
T ss_pred             -----------CCCceeEEEEEcCCHHHHHHHHHHHHHCCCEEe-cCcCC-C-cEEEEEECCCCcEEEE
Confidence                       023566899999   899999999999999864 45332 1 2333444555544444

>2rbb_A Glyoxalase/bleomycin resistance protein/dioxygena; structural genomics, PSI-2, PROT structure initiative; 1.82A {Burkholderia phytofirmans}

Probab=98.91  E-value=6.3e-09  Score=89.14  Aligned_cols=123  Identities=15%  Similarity=0.108  Sum_probs=78.4

Q ss_pred             ceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCC
Q 013898           31 NRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFD  110 (434)
Q Consensus        31 ~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~  110 (434)
                      .+++||.|.|+|++++++||+++|||++.....  ..    ....++.|+..+.+.......               ...
T Consensus         7 ~~i~hv~l~v~D~~~a~~FY~~~lG~~~~~~~~--~~----~~~~~~~~~~~l~l~~~~~~~---------------~~~   65 (141)
T 2rbb_A            7 ADLSYVNIFTRDIVAMSAFYQQVFGFQEIESIR--SP----IFRGLDTGKSCIGFNAHEAYE---------------LMQ   65 (141)
T ss_dssp             CEEEEEEEECSCHHHHHHHHHHHHCCEECGGGC--BT----TEEEEECSSSEEEEECTHHHH---------------HTT
T ss_pred             CcccEEEEEECCHHHHHHHHHHhcCCeeecccC--CC----ceEEeecCCEEEEEcCccccc---------------ccc
Confidence            489999999999999999999999999864321  11    134456677777664320000               000


Q ss_pred             hhHHhHHHHhcCCceeEEEEEec---CHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEeec
Q 013898          111 HAACRSFAASHGLAARSIAVEVE---DADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSY  178 (434)
Q Consensus       111 ~~~~~~~l~~hG~gv~~Iaf~V~---Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd~  178 (434)
                         ........+.++ +++|.|+   |+++++++++++|++++.+|...........++.+.|..+.+++.
T Consensus        66 ---~~~~~~~~~~~~-~~~f~v~~~~dv~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~iel~~~  132 (141)
T 2rbb_A           66 ---LAQFSETSGIKF-LLNFDVDTKEAVDKLVPVAIAAGATLIKAPYETYYHWYQAVLLDPERNVFRINNV  132 (141)
T ss_dssp             ---CGGGCCCBSCCE-EEEEECSCHHHHHHHHHHHHHTTCEEEEEEEECTTSEEEEEEECTTSCEEEEEEE
T ss_pred             ---ccccCCCCCCeE-EEEEEcCCHHHHHHHHHHHHHcCCeEecCccccCCccEEEEEECCCCCEEEEEEc
Confidence               000001234465 9999999   599999999999998766664432223344555666666666653

>2r6u_A Uncharacterized protein; structural genomics, PSI-2, RHA04853, MCSG, protein structur initiative, midwest center for structural genomics; 1.50A {Rhodococcus SP}

Probab=98.91  E-value=1e-08  Score=89.34  Aligned_cols=124  Identities=10%  Similarity=0.005  Sum_probs=77.2

Q ss_pred             ceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHh
Q 013898          205 GIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLE  284 (434)
Q Consensus       205 ~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~  284 (434)
                      ...+|+|+++.|+|++++++||+++|||+.... .  +.       ...++..++..  +.|..+..   ..... .+..
T Consensus        22 M~~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~-~--~~-------~~~~~~~~~~~--~~l~~~~~---~~~~~-~l~~   85 (148)
T 2r6u_A           22 MTGRIVHFEIPFDDGDRARAFYRDAFGWAIAEI-P--DM-------DYSMVTTGPVG--ESGMPDEP---GYING-GMMQ   85 (148)
T ss_dssp             TCCCEEEEEEEESSHHHHHHHHHHHHCCEEEEE-T--TT-------TEEEEECSCBC--TTSSBCSS---SCBCE-EEEE
T ss_pred             cCCceEEEEEEeCCHHHHHHHHHHccCcEEEEC-C--CC-------CEEEEEeCCcc--eeecccCC---ccccc-ceee
Confidence            346899999999999999999999999998752 1  11       11223333222  22322210   00000 0011


Q ss_pred             hcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEE
Q 013898          285 HNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQ  364 (434)
Q Consensus       285 ~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llq  364 (434)
                      .....|+ |++|.|+||++++++|+++    |++++.. |...-       +       +    . ..++-+|++|++++
T Consensus        86 ~~~~~g~-~l~f~v~dld~~~~~l~~~----G~~~~~~-~~~~~-------~-------~----g-~~~~~~DPdG~~ie  140 (148)
T 2r6u_A           86 RGEVTTP-VVTVDVESIESALERIESL----GGKTVTG-RTPVG-------N-------M----G-FAAYFTDSEGNVVG  140 (148)
T ss_dssp             SSSSCSC-EEEEECSCHHHHHHHHHHT----TCEEEEE-EEEET-------T-------T----E-EEEEEECTTSCEEE
T ss_pred             cCCCCeE-EEEEEcCCHHHHHHHHHHc----CCeEecC-CeecC-------C-------C----E-EEEEEECCCCCEEE
Confidence            1112456 9999999999999999999    9998864 22210       0       0    1 24566888898888


Q ss_pred             EEccc
Q 013898          365 IFTKP  369 (434)
Q Consensus       365 ifT~~  369 (434)
                      +++.+
T Consensus       141 l~~~~  145 (148)
T 2r6u_A          141 LWETA  145 (148)
T ss_dssp             EEEEC
T ss_pred             EEecC
Confidence            87653

>3ct8_A Protein BH2160, putative glyoxalase; NP_243026.1, glyoxalase/bleomycin resis protein/dioxygenase superfamily, structural genomics; HET: UNL; 2.10A {Bacillus halodurans c-125}

Probab=98.90  E-value=8.5e-09  Score=89.44  Aligned_cols=124  Identities=17%  Similarity=0.248  Sum_probs=83.0

Q ss_pred             cceeeeeeeeEecCCHHHHHHHH---HHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHH
Q 013898          204 YGIRRLDHAVGNVPELAPAVAYV---KSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQ  280 (434)
Q Consensus       204 ~~l~~iDHv~i~V~dl~~~~~fY---~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~  280 (434)
                      ..+.+++|+++.|+|++++++||   +++|||+......   .     +. . ++.   +...|.|..+... ....+  
T Consensus        16 ~~~~~i~hv~l~v~Dl~~a~~FY~~~~~~LG~~~~~~~~---~-----~~-~-~~~---g~~~l~l~~~~~~-~~~~~--   79 (146)
T 3ct8_A           16 YFQGMLHHVEINVDHLEESIAFWDWLLGELGYEDYQSWS---R-----GK-S-YKH---GKTYLVFVQTEDR-FQTPT--   79 (146)
T ss_dssp             TTTTSCCEEEEEESCHHHHHHHHHHHHHHTTCEEEEEET---T-----EE-E-EEE---TTEEEEEEECCGG-GSCSC--
T ss_pred             ccccceeEEEEEeCCHHHHHHHHHhhhhhCCCEEEEecC---C-----Cc-e-Eec---CCeEEEEEEcCCC-ccccc--
Confidence            35778999999999999999999   9999999876532   1     11 2 233   2356777654210 00000  


Q ss_pred             HHHhhcCCCCceEEEEEeC---CHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecC
Q 013898          281 TYLEHNEGAGVQHLALVSE---DIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRD  357 (434)
Q Consensus       281 ~fl~~~~G~GvqHIAf~vd---DI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d  357 (434)
                       +  ...+.|+.||||.|+   |+++++++|+++    |++++..+|...-      .+           .....+|-+|
T Consensus        80 -~--~~~~~g~~hi~f~v~~~~dv~~~~~~l~~~----G~~~~~~~p~~~~------~g-----------~~~~~~~~~D  135 (146)
T 3ct8_A           80 -F--HRKRTGLNHLAFHAASREKVDELTQKLKER----GDPILYEDRHPFA------GG-----------PNHYAVFCED  135 (146)
T ss_dssp             -C--CTTSSSCCEEEEECSCHHHHHHHHHHHHHH----TCCBCCTTTTTCT------TC-----------TTCCEEEEEC
T ss_pred             -c--cccCCCceEEEEECCCHHHHHHHHHHHHHc----CCccccCCCcccc------CC-----------CceEEEEEEC
Confidence             0  113467899999999   999999999999    9998862222110      00           0123567789


Q ss_pred             CCceEEEEEc
Q 013898          358 DQGTLLQIFT  367 (434)
Q Consensus       358 ~~g~llqifT  367 (434)
                      ++|++++++.
T Consensus       136 PdG~~iel~~  145 (146)
T 3ct8_A          136 PNRIKVEIVA  145 (146)
T ss_dssp             TTCCEEEEEC
T ss_pred             CCCCEEEEEe
Confidence            9999999875

>3rhe_A NAD-dependent benzaldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, SGX; 2.05A {Legionella pneumophila}

Probab=98.90  E-value=4.9e-09  Score=91.46  Aligned_cols=116  Identities=13%  Similarity=0.051  Sum_probs=76.9

Q ss_pred             cceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEe-CCEEEEEEcCCCCCCCcccccCCCCCCCCC
Q 013898           30 VNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRS-GDLRFVFTAPYSPSISDAADAGNSSASLPT  108 (434)
Q Consensus        30 i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~-G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~  108 (434)
                      +++++||.|.|+|++++++||+++|||++....+        ....++. ++..+.|.......    +           
T Consensus         4 ~~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~--------~~~~~~~~~g~~l~l~~~~~~~----~-----------   60 (148)
T 3rhe_A            4 LSDPNLVLFYVKNPAKSEEFYKNLLDTQPIESSP--------TFAMFVMKTGLRLGLWAQEEIE----P-----------   60 (148)
T ss_dssp             ---CEEEEEEESCHHHHHHHHHHHHTCCCSEECS--------SEEEEECTTSCEEEEEEGGGCS----S-----------
T ss_pred             cccccEEEEEeCCHHHHHHHHHHHcCCEEeccCC--------CEEEEEcCCCcEEEEecCCcCC----c-----------
Confidence            5789999999999999999999999999886632        1344554 67777775421100    0           


Q ss_pred             CChhHHhHHHHhcCCceeEEEEEecC---HHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEeec
Q 013898          109 FDHAACRSFAASHGLAARSIAVEVED---ADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSY  178 (434)
Q Consensus       109 ~~~~~~~~~l~~hG~gv~~Iaf~V~D---vd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd~  178 (434)
                               ....+.+..+++|.|+|   +++++++++++|++++.+|...... ....++.+.|..+.+..+
T Consensus        61 ---------~~~~~~~~~~l~f~v~d~~dvd~~~~~l~~~G~~i~~~p~~~~~G-~~~~~~DPdG~~iel~~~  123 (148)
T 3rhe_A           61 ---------KAHQTGGGMELSFQVNSNEMVDEIHRQWSDKEISIIQPPTQMDFG-YTFVGVDPDEHRLRIFCL  123 (148)
T ss_dssp             ---------CCC----CEEEEEECSCHHHHHHHHHHHHHTTCCEEEEEEEETTE-EEEEEECTTCCEEEEEEE
T ss_pred             ---------cccCCCCeEEEEEEcCCHHHHHHHHHHHHhCCCEEEeCCeecCCC-cEEEEECCCCCEEEEEEc
Confidence                     00112345689999987   9999999999999987666543222 344556666666666654

>3rri_A Glyoxalase/bleomycin resistance protein/dioxygena; structural genomics, PSI-biology, midwest center for structu genomics; 1.50A {Alicyclobacillus acidocaldarius subsp}

Probab=98.88  E-value=8.5e-09  Score=87.30  Aligned_cols=120  Identities=13%  Similarity=0.111  Sum_probs=77.9

Q ss_pred             eeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhh
Q 013898          206 IRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEH  285 (434)
Q Consensus       206 l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~  285 (434)
                      ..+|+||++.|+|++++++||+++|||+......    .     .  ..+......+.+.+....     .++       
T Consensus         7 ~~~i~hv~l~v~Dl~~a~~FY~~~LG~~~~~~~~----~-----~--~~~~~~g~~~~l~~~~~~-----~~~-------   63 (135)
T 3rri_A            7 PNDVFHLAIPARDLDEAYDFYVTKLGCKLARRYP----D-----R--ITLDFFGDQLVCHLSDRW-----DRE-------   63 (135)
T ss_dssp             TTSEEEEEEEESCHHHHHHHHTTTTCCEEEEEET----T-----E--EEEEETTEEEEEEECSCS-----CSS-------
T ss_pred             CCccceEEEEcCCHHHHHHHHHHhcCCEeeccCC----C-----c--EEEEEeCCEEEEEEcCcc-----ccc-------
Confidence            3579999999999999999999999999865421    1     1  122212222333332221     110       


Q ss_pred             cCCCCceEEEEEeC---CHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceE
Q 013898          286 NEGAGVQHLALVSE---DIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTL  362 (434)
Q Consensus       286 ~~G~GvqHIAf~vd---DI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~l  362 (434)
                       ...+.+|+||.+.   |++++.++|+++    |++++..| ....      .+.         ......+|-+|++|++
T Consensus        64 -~~~~~~h~~~~~~~~~d~~~~~~~l~~~----G~~~~~~p-~~~~------~~~---------~~~~~~~~~~DPdGn~  122 (135)
T 3rri_A           64 -VSMYPRHFGITFRDKKHFDNLYKLAKQR----GIPFYHDL-SRRF------EGL---------IEEHETFFLIDPSNNL  122 (135)
T ss_dssp             -CCSSSCEEEEECSSHHHHHHHHHHHHHT----TCCEEEEE-EEES------TTS---------TTCEEEEEEECTTCCE
T ss_pred             -CCCCCCeEEEEEcChHhHHHHHHHHHHc----CCceecCc-cccc------CCC---------CCceEEEEEECCCCCE
Confidence             2456899999995   599999999999    99987643 3310      000         0112356788999999


Q ss_pred             EEEEccc
Q 013898          363 LQIFTKP  369 (434)
Q Consensus       363 lqifT~~  369 (434)
                      +++++.+
T Consensus       123 iel~~~~  129 (135)
T 3rri_A          123 LEFKYYF  129 (135)
T ss_dssp             EEEEEES
T ss_pred             EEEEEEC
Confidence            9887754

>3itw_A Protein TIOX; bleomycin resistance fold, bisintercalator, solvent-exposed residue, thiocoraline, protein binding, peptide binding Pro; 2.15A {Micromonospora SP}

Probab=98.88  E-value=1.8e-08  Score=85.65  Aligned_cols=116  Identities=18%  Similarity=0.118  Sum_probs=78.9

Q ss_pred             EEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCChhHH
Q 013898           35 HVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHAAC  114 (434)
Q Consensus        35 HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (434)
                      .|.|.|+|++++++||+++|||++..+...+ +  ......++.|+..+.|..+....                   +. 
T Consensus         5 ~i~l~v~D~~~a~~FY~~~lG~~~~~~~~~~-g--~~~~~~l~~~~~~l~l~~~~~~~-------------------~~-   61 (137)
T 3itw_A            5 VVELAYTDPDRAVDWLVRVFGFRLLLRQPAI-G--TIRHADLDTGGGIVMVRRTGEPY-------------------TV-   61 (137)
T ss_dssp             EEEEEESCHHHHHHHHHHHHCCEEEEEESSS-S--SCSEEEEECSSSEEEEEETTCCS-------------------SC-
T ss_pred             EEEEEECCHHHHHHHHHHccCCEEEEEecCC-C--cEEEEEEecCCeEEEEEecCCCc-------------------Cc-
Confidence            5899999999999999999999998765422 2  12244556688888887642211                   00 


Q ss_pred             hHHHHhcCC-ceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEee
Q 013898          115 RSFAASHGL-AARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVS  177 (434)
Q Consensus       115 ~~~l~~hG~-gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd  177 (434)
                          ...+. ++.+++|.|+|+++++++++++|++++.+|...........++.+.|..+.|.+
T Consensus        62 ----~~~~~~~~~~~~~~v~dv~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~iel~~  121 (137)
T 3itw_A           62 ----SCAGGHTCKQVIVWVSDVDEHFMRSTAAGADIVQPLQDKPWGLRQYLVRDLEGHLWEFTR  121 (137)
T ss_dssp             ----EECCCCCCCEEEEEESCHHHHHHHHHHTTCEEEEEEEEETTTEEEEEEECSSSCEEEEEE
T ss_pred             ----cCCCCCcEEEEEEEeCCHHHHHHHHHHcCCeeccCccccCCCcEEEEEECCCCCEEEEEE
Confidence                11222 333899999999999999999999877666443222344555556666666655

>3rri_A Glyoxalase/bleomycin resistance protein/dioxygena; structural genomics, PSI-biology, midwest center for structu genomics; 1.50A {Alicyclobacillus acidocaldarius subsp}

Probab=98.87  E-value=3.9e-08  Score=83.17  Aligned_cols=114  Identities=10%  Similarity=-0.022  Sum_probs=75.1

Q ss_pred             cceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCC
Q 013898           30 VNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTF  109 (434)
Q Consensus        30 i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~  109 (434)
                      .++++||.|.|+|++++++||++.|||++....+        ....+..++..+.+.....+.                 
T Consensus         7 ~~~i~hv~l~v~Dl~~a~~FY~~~LG~~~~~~~~--------~~~~~~~~g~~~~l~~~~~~~-----------------   61 (135)
T 3rri_A            7 PNDVFHLAIPARDLDEAYDFYVTKLGCKLARRYP--------DRITLDFFGDQLVCHLSDRWD-----------------   61 (135)
T ss_dssp             TTSEEEEEEEESCHHHHHHHHTTTTCCEEEEEET--------TEEEEEETTEEEEEEECSCSC-----------------
T ss_pred             CCccceEEEEcCCHHHHHHHHHHhcCCEeeccCC--------CcEEEEEeCCEEEEEEcCccc-----------------
Confidence            5789999999999999999999999999865532        123444444445554321110                 


Q ss_pred             ChhHHhHHHHhcCCceeEEEEEec---CHHHHHHHHHHcCCCCCCCCccc----cCceEEEEEEecCCeEEEEee
Q 013898          110 DHAACRSFAASHGLAARSIAVEVE---DADVAFNTSVAHGAKPSSPPVIL----DNLAVIAEVQLYGDVVLRYVS  177 (434)
Q Consensus       110 ~~~~~~~~l~~hG~gv~~Iaf~V~---Dvd~a~~ra~~~Ga~~~~~p~~~----~~~~~~~~i~~~Gg~~~~fvd  177 (434)
                        .       ....+..|++|.|.   |+++++++++++|+++..+|...    .+......+++++|..++|..
T Consensus        62 --~-------~~~~~~~h~~~~~~~~~d~~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~~~~DPdGn~iel~~  127 (135)
T 3rri_A           62 --R-------EVSMYPRHFGITFRDKKHFDNLYKLAKQRGIPFYHDLSRRFEGLIEEHETFFLIDPSNNLLEFKY  127 (135)
T ss_dssp             --S-------SCCSSSCEEEEECSSHHHHHHHHHHHHHTTCCEEEEEEEESTTSTTCEEEEEEECTTCCEEEEEE
T ss_pred             --c-------cCCCCCCeEEEEEcChHhHHHHHHHHHHcCCceecCcccccCCCCCceEEEEEECCCCCEEEEEE
Confidence              0       02234568888885   59999999999999876665432    112233445566666666655

>2a4x_A Mitomycin-binding protein; ALFA/beta protein, mitomycin C-binding protein, bleomycin A2, antimicrobial protein; HET: BLM; 1.40A {Streptomyces caespitosus} SCOP: d.32.1.2 PDB: 2a4w_A* 1kmz_A 1kll_A*

Probab=98.86  E-value=6.4e-09  Score=88.74  Aligned_cols=122  Identities=15%  Similarity=0.140  Sum_probs=80.6

Q ss_pred             eeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHH--
Q 013898          206 IRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYL--  283 (434)
Q Consensus       206 l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl--  283 (434)
                      +.+++|+++.|+|++++++||++ |||+......  +.      . ...+.. .+...|.|.....       ...+.  
T Consensus         2 ~~~l~hv~l~v~D~~~a~~FY~~-LG~~~~~~~~--~~------~-~~~~~~-~~~~~l~l~~~~~-------~~~~~~~   63 (138)
T 2a4x_A            2 SARISLFAVVVEDMAKSLEFYRK-LGVEIPAEAD--SA------P-HTEAVL-DGGIRLAWDTVET-------VRSYDPE   63 (138)
T ss_dssp             CCEEEEEEEEESCHHHHHHHHHT-TTCCCCGGGG--GC------S-EEEEEC-TTSCEEEEEEHHH-------HHHHCTT
T ss_pred             cceeeEEEEEECCHHHHHHHHHH-cCCcEEecCC--CC------c-eEEEEc-CCCeEEEEecCcc-------chhhCcc
Confidence            46899999999999999999998 9999765321  10      1 112222 2345666654210       00000  


Q ss_pred             -hhcCCCCceEEEEEeC---CHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCC
Q 013898          284 -EHNEGAGVQHLALVSE---DIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQ  359 (434)
Q Consensus       284 -~~~~G~GvqHIAf~vd---DI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~  359 (434)
                       ....+.|..|++|.|+   |+++++++|+++    |++++.. |...        +           .....++-+|++
T Consensus        64 ~~~~~~~~~~~l~f~v~~~~dv~~~~~~l~~~----G~~~~~~-~~~~--------~-----------~g~~~~~~~DPd  119 (138)
T 2a4x_A           64 WQAPTGGHRFAIAFEFPDTASVDKKYAELVDA----GYEGHLK-PWNA--------V-----------WGQRYAIVKDPD  119 (138)
T ss_dssp             CCCCBSSCSEEEEEECSSHHHHHHHHHHHHHT----TCCEEEE-EEEE--------T-----------TTEEEEEEECTT
T ss_pred             cCCCCCCCeEEEEEEeCCHHHHHHHHHHHHHC----CCceeeC-Cccc--------C-----------CCcEEEEEECCC
Confidence             0113467999999999   999999999999    9998854 3321        0           011245678889


Q ss_pred             ceEEEEEccc
Q 013898          360 GTLLQIFTKP  369 (434)
Q Consensus       360 g~llqifT~~  369 (434)
                      |+++++++.+
T Consensus       120 G~~iel~~~~  129 (138)
T 2a4x_A          120 GNVVDLFAPL  129 (138)
T ss_dssp             CCEEEEEEEC
T ss_pred             CCEEEEEeCC
Confidence            9999988765

>3bqx_A Glyoxalase-related enzyme; VOC superfamily, PSI-2, STRU genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; 1.40A {Fulvimarina pelagi}

Probab=98.85  E-value=1.4e-08  Score=88.19  Aligned_cols=122  Identities=11%  Similarity=0.040  Sum_probs=82.8

Q ss_pred             eeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHh-
Q 013898          206 IRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLE-  284 (434)
Q Consensus       206 l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~-  284 (434)
                      +.+|+|+++.|+|++++++||+++|||+.....    .       ....+..  +...|.|.+...       ...... 
T Consensus         3 ~~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~----~-------~~~~~~~--~~~~l~l~~~~~-------~~~~~~~   62 (150)
T 3bqx_A            3 LQQVAVITLGIGDLEASARFYGEGFGWAPVFRN----P-------EIIFYQM--NGFVLATWLVQN-------LQEDVGV   62 (150)
T ss_dssp             CCCCCEEEEEESCHHHHHHHHHHTSCCCCSEEC----S-------SEEEEEC--SSSEEEEEEHHH-------HHHHHSS
T ss_pred             ccceEEEEEEcCCHHHHHHHHHHhcCCEeecCC----C-------CEEEEEc--CCEEEEEEeccc-------cccccCC
Confidence            468999999999999999999999999987542    1       0122333  345666655320       000011 


Q ss_pred             -hcCCCCceEEEEEe---CCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCc
Q 013898          285 -HNEGAGVQHLALVS---EDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQG  360 (434)
Q Consensus       285 -~~~G~GvqHIAf~v---dDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g  360 (434)
                       ...+.|..|++|.|   +|+++++++|+++    |++++..| ...        +           .....++-+|++|
T Consensus        63 ~~~~~~~~~~l~f~v~~~~dv~~~~~~l~~~----G~~~~~~~-~~~--------~-----------~g~~~~~~~DPdG  118 (150)
T 3bqx_A           63 AVTSRPGSMALAHNVRAETEVAPLMERLVAA----GGQLLRPA-DAP--------P-----------HGGLRGYVADPDG  118 (150)
T ss_dssp             CCCSSCCSCEEEEECSSGGGHHHHHHHHHHT----TCEEEEEE-ECC--------T-----------TSSEEEEEECTTC
T ss_pred             CCCCCCCeEEEEEEeCCHHHHHHHHHHHHHC----CCEEecCC-ccc--------C-----------CCCEEEEEECCCC
Confidence             01246789999999   9999999999999    99988532 321        0           0112456788899


Q ss_pred             eEEEEEccccC
Q 013898          361 TLLQIFTKPVG  371 (434)
Q Consensus       361 ~llqifT~~~~  371 (434)
                      +++++++.|..
T Consensus       119 ~~iel~~~~~~  129 (150)
T 3bqx_A          119 HIWEIAFNPVW  129 (150)
T ss_dssp             CEEEEEECTTS
T ss_pred             CEEEEEeCCCc
Confidence            99988887654

>3oaj_A Putative ring-cleaving dioxygenase MHQO; structural genomics, protein structure initiative, PSI-biolo unknown function; 1.40A {Bacillus subtilis subsp}

Probab=98.84  E-value=1.7e-08  Score=100.34  Aligned_cols=126  Identities=13%  Similarity=0.070  Sum_probs=85.2

Q ss_pred             ceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCC--ceEEEecccCCCCCCCchHHHH
Q 013898          205 GIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDE--MVLLPMNEPVFGTKRKSQIQTY  282 (434)
Q Consensus       205 ~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g--~v~i~L~e~~~g~~~~s~i~~f  282 (434)
                      .+++|+||++.|+|++++++||+++|||+........+.    .+.....+....+  ...|.|.....  ...      
T Consensus         5 ~i~~i~Hv~l~v~Dl~~s~~FY~~vLGl~~v~~~~~~~~----~~~~~l~~~~~~g~~g~~l~l~~~~~--~~~------   72 (335)
T 3oaj_A            5 KTMGIHHITAIVGHPQENTDFYAGVLGLRLVKQTVNFDD----PGTYHLYFGNEGGKPGTIITFFPWAG--ARQ------   72 (335)
T ss_dssp             CCCSEEEEEEEESCHHHHHHHHTTTTCCEEEEEEECSSC----TTSEEEEEESTTCCTTSEEEEEECTT--CCB------
T ss_pred             cCCcccEEEEEeCCHHHHHHHHHHhcCCEEEeeecCCCC----CceEEEEEecCCCCCCcEEEEEECCC--CCC------
Confidence            578999999999999999999999999998765321111    1122222332222  34566654321  111      


Q ss_pred             HhhcCCCCceEEEEEeC--CHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCc
Q 013898          283 LEHNEGAGVQHLALVSE--DIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQG  360 (434)
Q Consensus       283 l~~~~G~GvqHIAf~vd--DI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g  360 (434)
                       ...+..|++|+||.|+  |+++..++|+++    |+++.. .         .+.+             ...+|-+|++|
T Consensus        73 -~~~~~~~~~hiaf~V~~~dl~~~~~rL~~~----Gv~~~~-~---------~~~g-------------~~~~~f~DPdG  124 (335)
T 3oaj_A           73 -GVIGDGQVGVTSYVVPKGAMAFWEKRLEKF----NVPYTK-I---------ERFG-------------EQYVEFDDPHG  124 (335)
T ss_dssp             -CBCCBSEEEEEEEEECTTCHHHHHHHHHHT----TCCCEE-E---------EETT-------------EEEEEEECTTS
T ss_pred             -CCCCCCceEEEEEEecHHHHHHHHHHHHhC----cceeee-e---------ccCC-------------cEEEEEECCCC
Confidence             1112346999999999  999999999999    987663 1         1111             23578899999


Q ss_pred             eEEEEEcccc
Q 013898          361 TLLQIFTKPV  370 (434)
Q Consensus       361 ~llqifT~~~  370 (434)
                      ..+++++.+-
T Consensus       125 n~iEl~~~~~  134 (335)
T 3oaj_A          125 LHLEIVEREE  134 (335)
T ss_dssp             CEEEEEECSC
T ss_pred             CEEEEEEeCC
Confidence            9999998764

>1ecs_A Bleomycin resistance protein; arm-exchange, antibiotic inhibitor; HET: PG4; 1.70A {Klebsiella pneumoniae} SCOP: d.32.1.2 PDB: 1ewj_A* 1niq_B* 1mh6_A

Probab=98.84  E-value=5.6e-08  Score=81.59  Aligned_cols=108  Identities=19%  Similarity=0.168  Sum_probs=72.1

Q ss_pred             EEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCChh
Q 013898           33 FHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHA  112 (434)
Q Consensus        33 l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~  112 (434)
                      --||.+.|+|++++++||++ |||++....+        ....++.|+..+.|......                     
T Consensus         4 ~~~~~l~v~D~~~a~~FY~~-LG~~~~~~~~--------~~~~~~~~~~~l~l~~~~~~---------------------   53 (126)
T 1ecs_A            4 QATPNLPSRDFDSTAAFYER-LGFGIVFRDA--------GWMILQRGDLMLEFFAHPGL---------------------   53 (126)
T ss_dssp             EEEEEEEESCHHHHHHHHHT-TTCEEEEECS--------SEEEEEETTEEEEEEECTTC---------------------
T ss_pred             cEEEEEEeCCHHHHHHHHHH-CCCEEEecCC--------CEEEEEeCCEEEEEEeCCCC---------------------
Confidence            45899999999999999997 9999886521        13446678888877642110                     


Q ss_pred             HHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCC-------CCCCccccCceEEEEEEecCCeEEEEee
Q 013898          113 ACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKP-------SSPPVILDNLAVIAEVQLYGDVVLRYVS  177 (434)
Q Consensus       113 ~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~-------~~~p~~~~~~~~~~~i~~~Gg~~~~fvd  177 (434)
                             ....+..+++|.|+|+++++++++++|+++       +.+|...........++++.|..+.+.+
T Consensus        54 -------~~~~~~~~~~~~v~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~~~~~~DPdG~~iel~~  118 (126)
T 1ecs_A           54 -------DPLASWFSCCLRLDDLAEFYRQCKSVGIQETSSGYPRIHAPELQGWGGTMAALVDPDGTLLRLIQ  118 (126)
T ss_dssp             -------CGGGCCCEEEEEESCHHHHHHHHHHTTCCBCSSSSSEEEEEEECTTSSEEEEEECTTSCEEEEEE
T ss_pred             -------CCCCcceEEEEEECCHHHHHHHHHHCCCccccccCccccCCcccCcccEEEEEECCCCCEEEEec
Confidence                   001245689999999999999999999984       3333322112233444555555555554

>2kjz_A ATC0852; protein of unknown function, dimer, structural genomics, PSI protein structure initiative; NMR {Agrobacterium tumefaciens}

Probab=98.84  E-value=1.6e-08  Score=87.53  Aligned_cols=118  Identities=12%  Similarity=0.144  Sum_probs=78.6

Q ss_pred             ceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHh
Q 013898          205 GIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLE  284 (434)
Q Consensus       205 ~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~  284 (434)
                      .+.+++|+++.|+|++++++||+++|||+......  +       .  ..+..++ ...|.|.....  ....       
T Consensus        22 ~m~~l~hv~l~v~Dl~~a~~FY~~~LG~~~~~~~~--~-------~--~~~~~~~-~~~l~l~~~~~--~~~~-------   80 (144)
T 2kjz_A           22 HMTHPDFTILYVDNPPASTQFYKALLGVDPVESSP--T-------F--SLFVLAN-GMKLGLWSRHT--VEPK-------   80 (144)
T ss_dssp             -CCCCCEEEEEESCHHHHHHHHHHHHTCCCSEEET--T-------E--EEEECTT-SCEEEEEETTS--CSSC-------
T ss_pred             ccCceeEEEEEeCCHHHHHHHHHHccCCEeccCCC--C-------e--EEEEcCC-CcEEEEEeCCC--CCCc-------
Confidence            45699999999999999999999999999875431  1       1  2233332 34566654321  0010       


Q ss_pred             hcCCCCceEEEEEeC---CHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCce
Q 013898          285 HNEGAGVQHLALVSE---DIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGT  361 (434)
Q Consensus       285 ~~~G~GvqHIAf~vd---DI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~  361 (434)
                      ...+.+..||||.|+   |+++++++|+++    |++++.. |...        +           .. ..++-+|++|+
T Consensus        81 ~~~~~~~~hl~f~v~d~~dv~~~~~~l~~~----G~~~~~~-~~~~--------~-----------~g-~~~~~~DPdG~  135 (144)
T 2kjz_A           81 ASVTGGGGELAFRVENDAQVDETFAGWKAS----GVAMLQQ-PAKM--------E-----------FG-YTFTAADPDSH  135 (144)
T ss_dssp             CCCSSSSCEEEEECSSHHHHHHHHHHHHHT----TCCCCSC-CEEE--------T-----------TE-EEEEECCTTCC
T ss_pred             cCCCCCceEEEEEeCCHHHHHHHHHHHHHC----CCeEecC-ceec--------C-----------Cc-eEEEEECCCCC
Confidence            113467999999997   589999999999    9998864 3320        0           01 24466778887


Q ss_pred             EEEEEcc
Q 013898          362 LLQIFTK  368 (434)
Q Consensus       362 llqifT~  368 (434)
                      ++++++.
T Consensus       136 ~iel~~~  142 (144)
T 2kjz_A          136 RLRVYAF  142 (144)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEec
Confidence            7777653

>1lgt_A Biphenyl-2,3-DIOL 1,2-dioxygenase; extradiol dioxygenase, 2,3-dihydroxybiphenyl, non-heme iron, anaerobic, PCB biodegradation; HET: BP3; 1.70A {Burkholderia xenovorans} SCOP: d.32.1.3 d.32.1.3 PDB: 1kmy_A* 1knd_A 1knf_A 1han_A* 1lkd_A*

Probab=98.84  E-value=2.4e-08  Score=96.46  Aligned_cols=115  Identities=13%  Similarity=0.166  Sum_probs=80.9

Q ss_pred             eeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhh
Q 013898          206 IRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEH  285 (434)
Q Consensus       206 l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~  285 (434)
                      +++|+||.+.|+|++++.+||+++|||+......    .       ...+..+...+.+.+...                
T Consensus         2 i~~i~hv~l~v~Dl~~s~~FY~~~LG~~~~~~~~----~-------~~~~~~~~~~~~l~~~~~----------------   54 (297)
T 1lgt_A            2 IRSLGYMGFAVSDVAAWRSFLTQKLGLMEAGTTD----N-------GDLFRIDSRAWRIAVQQG----------------   54 (297)
T ss_dssp             EEEEEEEEEEESCHHHHHHHHHHTTCCEEEEEET----T-------EEEEESSSBSCSEEEEEC----------------
T ss_pred             ceEEEEEEEEcCCHHHHHHHHHHccCCEEeecCC----C-------eEEEEeCCCcEEEEEecC----------------
Confidence            6899999999999999999999999999876421    0       123333333233444321                


Q ss_pred             cCCCCceEEEEEeC---CHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceE
Q 013898          286 NEGAGVQHLALVSE---DIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTL  362 (434)
Q Consensus       286 ~~G~GvqHIAf~vd---DI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~l  362 (434)
                       ...|+.|+||.|+   |+++++++|+++    |+++...| ...++.   +             .....++-+|++|+.
T Consensus        55 -~~~~~~~~~f~v~~~~dl~~~~~~l~~~----G~~~~~~~-~~~~~~---~-------------~~~~~~~~~DPdG~~  112 (297)
T 1lgt_A           55 -EVDDLAFAGYEVADAAGLAQMADKLKQA----GIAVTTGD-ASLARR---R-------------GVTGLITFADPFGLP  112 (297)
T ss_dssp             -TTCEEEEEEEEESSHHHHHHHHHHHHHT----TCCCEECC-HHHHHH---H-------------TCSEEEEEECTTSCE
T ss_pred             -CCCCccEEEEEeCCHHHHHHHHHHHHHC----CCeEEeCC-cccccc---C-------------CceeEEEEECCCCCE
Confidence             1357999999999   999999999999    99988653 321110   0             112356778889999


Q ss_pred             EEEEccc
Q 013898          363 LQIFTKP  369 (434)
Q Consensus       363 lqifT~~  369 (434)
                      +.++..+
T Consensus       113 iel~~~~  119 (297)
T 1lgt_A          113 LEIYYGA  119 (297)
T ss_dssp             EEEEECC
T ss_pred             EEEEECc
Confidence            9998765

>2qnt_A AGR_C_3434P, uncharacterized protein ATU1872; glyoxalase/bleomycin resistance protein/dioxygenase family R protein, PSI-2, MCSG; HET: MSE EPE; 1.40A {Agrobacterium tumefaciens str}

Probab=98.84  E-value=3.4e-09  Score=90.51  Aligned_cols=118  Identities=14%  Similarity=0.060  Sum_probs=74.6

Q ss_pred             CCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEE-----cCCCCCCCcccccCCC
Q 013898           28 FRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFT-----APYSPSISDAADAGNS  102 (434)
Q Consensus        28 ~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~-----~p~~~~~~~~~~~~~~  102 (434)
                      +.+++++||.|.|+|++++++||+++|||++....+  .      ...++ ++..+...     ......          
T Consensus         4 ~~~~~l~~v~l~v~D~~~a~~FY~~~LG~~~~~~~~--~------~~~~~-~g~~l~~~~~~~~~~~~~~----------   64 (141)
T 2qnt_A            4 FQGMRFVNPIPFVRDINRSKSFYRDRLGLKILEDFG--S------FVLFE-TGFAIHEGRSLEETIWRTS----------   64 (141)
T ss_dssp             CCSCCCCCCCCEESCHHHHHHHHHHTTCCCEEEECS--S------EEEET-TSCEEEEHHHHHHHHHSCC----------
T ss_pred             ccccccceEEEEECCHHHHHHHHHHhcCCEEEEEcC--C------cEEEe-ccceeccCchhhhhccccC----------
Confidence            457889999999999999999999999999886532  1      12233 33333210     000000          


Q ss_pred             CCCCCCCChhHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEee
Q 013898          103 SASLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVS  177 (434)
Q Consensus       103 ~~~~~~~~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd  177 (434)
                                  ......++.+..+++|.|+|++++++++++ |++++.+|...........++++.|..+.+.+
T Consensus        65 ------------~~~~~~~~~~~~~~~~~v~dv~~~~~~l~~-G~~~~~~~~~~~~g~~~~~~~DPdG~~iel~~  126 (141)
T 2qnt_A           65 ------------SDAQEAYGRRNMLLYFEHADVDAAFQDIAP-HVELIHPLERQAWGQRVFRFYDPDGHAIEVGE  126 (141)
T ss_dssp             ------------C--CCCSCCSSCEEEEEESCHHHHHC-CGG-GSCEEEEEEECTTSCEEEEEECTTCCEEEEEE
T ss_pred             ------------CccccccCCCceEEEEEeCcHHHHHHHHHc-CCccccCCccCCCCCEEEEEECCCCCEEEEEe
Confidence                        000001334677999999999999999999 99876666443222334455566666666665

>3g12_A Putative lactoylglutathione lyase; glyoxalase, bleomycin resistance, PSI-2, NYSGXRC, structural genomics; 2.58A {Bdellovibrio bacteriovorus HD100}

Probab=98.82  E-value=6.6e-09  Score=88.18  Aligned_cols=117  Identities=17%  Similarity=0.127  Sum_probs=75.3

Q ss_pred             eeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhh
Q 013898          206 IRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEH  285 (434)
Q Consensus       206 l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~  285 (434)
                      ...|+||++.|+|++++++||++ |||+......  +.+ .   ..  .+.. .+...+.|....    .. .       
T Consensus         4 ~~~i~hv~l~v~D~~~a~~FY~~-LG~~~~~~~~--~~~-~---~~--~~~~-~~~~~l~l~~~~----~~-~-------   61 (128)
T 3g12_A            4 SLLITSITINTSHLQGMLGFYRI-IGFQFTASKV--DKG-S---EV--HRAV-HNGVEFSLYSIQ----NP-Q-------   61 (128)
T ss_dssp             CEEEEEEEEEESCHHHHHHHHHH-HTCCCEEC--------C---CE--EEEE-ETTEEEEEEECC----CC-S-------
T ss_pred             cceEEEEEEEcCCHHHHHHHHHH-CCCEEecccC--CCC-C---EE--EEEe-CCCeEEEEEECC----CC-c-------
Confidence            34799999999999999999999 9999875421  100 0   11  1110 133455553321    11 0       


Q ss_pred             cCCCCceEEEEEeCCHHHHHHHHHHhcCCCCce-eccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEE
Q 013898          286 NEGAGVQHLALVSEDIFRTLREMRKRSGVGGFE-FMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQ  364 (434)
Q Consensus       286 ~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~-fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llq  364 (434)
                      ....+-.|++|.|+||++++++|+++    |++ ++.. |...      -.+             .. .+-+|++|++++
T Consensus        62 ~~~~~~~~l~f~v~dvd~~~~~l~~~----G~~~~~~~-p~~~------~~G-------------~~-~~~~DPdGn~ie  116 (128)
T 3g12_A           62 RSQIPSLQLGFQITDLEKTVQELVKI----PGAMCILD-PTDM------PDG-------------KK-AIVLDPDGHSIE  116 (128)
T ss_dssp             SCCCCSEEEEEEESCHHHHHHHHTTS----TTCEEEEE-EEEC------C-C-------------EE-EEEECTTCCEEE
T ss_pred             CCCCCceEEEEEeCCHHHHHHHHHHC----CCceeccC-ceeC------CCc-------------cE-EEEECCCCCEEE
Confidence            12334578999999999999999999    999 7753 3321      001             11 567888999999


Q ss_pred             EEccc
Q 013898          365 IFTKP  369 (434)
Q Consensus       365 ifT~~  369 (434)
                      +++.+
T Consensus       117 l~~~~  121 (128)
T 3g12_A          117 LCELE  121 (128)
T ss_dssp             EEC--
T ss_pred             EEEec
Confidence            99876

>3r6a_A Uncharacterized protein; PSI biology, structural genomics, NEW YORK structural genomi research consortium, putative glyoxalase I; 1.76A {Methanosarcina mazei}

Probab=98.82  E-value=1.9e-08  Score=87.42  Aligned_cols=116  Identities=12%  Similarity=0.119  Sum_probs=78.7

Q ss_pred             CCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCC
Q 013898           28 FRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLP  107 (434)
Q Consensus        28 ~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~  107 (434)
                      +.+.++. |.|.|+|++++++||+++|||+++.+...+..    ...+...|++.++...  .                 
T Consensus         3 M~i~~i~-i~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~----~~~~~~~~~~~l~~~~--~-----------------   58 (144)
T 3r6a_A            3 MKILQIL-SRLYVADLNPALEFYEELLETPVAMRFEIPQT----GVELAQISTILLIAGS--E-----------------   58 (144)
T ss_dssp             CCEEEEE-EEEEESCHHHHHHHHHHHTTCCCCEECCCSCS----SCEEEEETTEEEEESC--H-----------------
T ss_pred             EEEEEEE-EEEEECCHHHHHHHHHHhcCCEEEEEeccCCc----cEEEEEeccEEEecCC--c-----------------
Confidence            3577888 99999999999999999999998876432221    1223344664333211  0                 


Q ss_pred             CCChhHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEeec
Q 013898          108 TFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSY  178 (434)
Q Consensus       108 ~~~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd~  178 (434)
                          ...      .+.+..+++|.|+|+++++++++++|+++..+|...... ....++++.|..+.|+++
T Consensus        59 ----~~~------~~~~~~hl~f~V~d~d~~~~~l~~~G~~v~~~p~~~~~G-~~~~~~DPdG~~iel~~~  118 (144)
T 3r6a_A           59 ----EAL------KPFRNTQATFLVDSLDKFKTFLEENGAEIIRGPSKVPTG-RNMTVRHSDGSVIEYVEH  118 (144)
T ss_dssp             ----HHH------GGGGGCCEEEEESCHHHHHHHHHHTTCEEEEEEEEETTE-EEEEEECTTSCEEEEEEE
T ss_pred             ----ccC------CCCcceEEEEEeCCHHHHHHHHHHcCCEEecCCccCCCc-eEEEEECCCCCEEEEEEc
Confidence                000      112336899999999999999999999877666543222 345567777777777775

>1qto_A Bleomycin-binding protein; arm-exchange, antibiotic inhibitor; 1.50A {Streptomyces verticillus} SCOP: d.32.1.2 PDB: 1jie_A* 1jif_A

Probab=98.79  E-value=3.4e-08  Score=82.54  Aligned_cols=106  Identities=13%  Similarity=0.018  Sum_probs=72.3

Q ss_pred             EEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCChhH
Q 013898           34 HHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHAA  113 (434)
Q Consensus        34 ~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~  113 (434)
                      .|+.|.|+|++++++||+++|||++....   .     ....++.|+..+.|.....                     ..
T Consensus         7 ~~~~l~v~D~~~a~~FY~~~LG~~~~~~~---~-----~~~~~~~~~~~l~l~~~~~---------------------~~   57 (122)
T 1qto_A            7 AVPVLTAVDVPANVSFWVDTLGFEKDFGD---R-----DFAGVRRGDIRLHISRTEH---------------------QI   57 (122)
T ss_dssp             CCCEEEESSHHHHHHHHHHTTCCEEEEEC---S-----SEEEEEETTEEEEEEECSC---------------------HH
T ss_pred             eeEEEEcCCHHHHHHHHHhccCcEEeeCC---C-----CEEEEEECCEEEEEEcCCC---------------------CC
Confidence            37899999999999999999999988652   1     1344566888888764210                     00


Q ss_pred             HhHHHHhcCCceeEEEEEecCHHHHHHHHHHc------CC--CCCCCCccccCceEEEEEEecCCeEEEEee
Q 013898          114 CRSFAASHGLAARSIAVEVEDADVAFNTSVAH------GA--KPSSPPVILDNLAVIAEVQLYGDVVLRYVS  177 (434)
Q Consensus       114 ~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~------Ga--~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd  177 (434)
                             .+.+ .+++|.|+|+++++++++++      |+  ++..+|...... ....++++.|..+.+.+
T Consensus        58 -------~~~~-~~~~~~v~dvd~~~~~l~~~~~~~~~G~~~~~~~~~~~~~~g-~~~~~~DPdG~~iel~~  120 (122)
T 1qto_A           58 -------VADN-TSAWIEVTDPDALHEEWARAVSTDYADTSGPAMTPVGESPAG-REFAVRDPAGNCVHFTA  120 (122)
T ss_dssp             -------HHTT-CEEEEEESCHHHHHHHHTTTSCSCTTCTTSCEECCCEEETTE-EEEEEECTTSCEEEEEE
T ss_pred             -------CCCc-eEEEEEECCHHHHHHHHHhhccccccCccccccCCCcCCCCC-cEEEEECCCCCEEEEec
Confidence                   1112 58999999999999999999      98  666665433222 33344555555555543

>3zi1_A Glyoxalase domain-containing protein 4; isomerase; 1.90A {Homo sapiens}

Probab=98.79  E-value=3.7e-08  Score=97.45  Aligned_cols=124  Identities=13%  Similarity=0.133  Sum_probs=80.4

Q ss_pred             ccceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccC-----ccccc-CceEEEEEcC--CCceEEEecccCCCCC
Q 013898          203 DYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDV-----GTSES-GLNSVVLANN--DEMVLLPMNEPVFGTK  274 (434)
Q Consensus       203 ~~~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~-----~~~~~-g~~s~~l~~~--~g~v~i~L~e~~~g~~  274 (434)
                      .+.+++|+|+++.|+|++++++||+++|||+........+.     .+.+. .+...++...  .+...++|.....  .
T Consensus        22 ~M~~~~i~Hv~l~V~Dle~s~~FY~~vLGl~~~~~~~~~~~~~a~~~g~~~~~~~~~~l~~~~~~~~~~leL~~~~~--~   99 (330)
T 3zi1_A           22 SMAARRALHFVFKVGNRFQTARFYRDVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMVGFGPEDDHFVAELTYNYG--V   99 (330)
T ss_dssp             GCSCCEEEEEEEECSCHHHHHHHHHHTSCCEEEEEEEEC---------CCCSCEEEEEEESSCTTTCCEEEEEEETT--C
T ss_pred             ecccceeeEEEEEeCCHHHHHHHHHHhcCCeEEEEeecchhhhhhccCCcCCceEEEEEecCCCCCccEEEEeccCC--C
Confidence            45678999999999999999999999999998765432210     00001 1223333322  2345566654321  0


Q ss_pred             CCchHHHHHhhcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEE
Q 013898          275 RKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLV  354 (434)
Q Consensus       275 ~~s~i~~fl~~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~  354 (434)
                      .        ....+.|++||||.|+|+   .++++++    |+++...| .                         ++++
T Consensus       100 ~--------~~~~~~g~~hiaf~V~d~---~~~l~~~----G~~~~~~~-~-------------------------~~~~  138 (330)
T 3zi1_A          100 G--------DYKLGNDFMGITLASSQA---VSNARKL----EWPLTEVA-E-------------------------GVFE  138 (330)
T ss_dssp             C--------CCCBCSSEEEEEEECHHH---HHHHHHH----TCCCEEEE-T-------------------------TEEE
T ss_pred             C--------ccccCCCeeEEEEECchH---HHHHHHc----CCceeccC-C-------------------------ceEE
Confidence            1        112467899999999998   5667778    99887532 1                         2556


Q ss_pred             ecCCCceEEEEEccc
Q 013898          355 DRDDQGTLLQIFTKP  369 (434)
Q Consensus       355 D~d~~g~llqifT~~  369 (434)
                      -+|++|+.++++..+
T Consensus       139 ~~DPdG~~iel~~~~  153 (330)
T 3zi1_A          139 TEAPGGYKFYLQNRS  153 (330)
T ss_dssp             EECTTSCEEEEESSC
T ss_pred             EECCCCCEEEEEecC
Confidence            678888888888764

>3fcd_A Lyase, ORF125EGC139; lactoylglutathione lyase, YECM, PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.92A {Uncultured bacterium} SCOP: d.32.1.0

Probab=98.79  E-value=5.8e-08  Score=82.60  Aligned_cols=112  Identities=13%  Similarity=0.083  Sum_probs=71.7

Q ss_pred             EEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCChh
Q 013898           33 FHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHA  112 (434)
Q Consensus        33 l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~  112 (434)
                      --+..|.|+|++++++||+++|||++....+        ....++.|+..|.|........                   
T Consensus         8 ~~~~~l~v~D~~~a~~FY~~~LG~~~~~~~~--------~~~~l~~~~~~l~l~~~~~~~~-------------------   60 (134)
T 3fcd_A            8 QITPFLHIPDMQEALTLFCDTLGFELKYRHS--------NYAYLELSGCGLRLLEEPARKI-------------------   60 (134)
T ss_dssp             EEEEEEEESCHHHHHHHHTTTTCCEEEEEET--------TEEEEEETTEEEEEEECCCC---------------------
T ss_pred             cceeEEEECCHHHHHHHHHhccCcEEEEeCC--------CeEEEEECCEEEEEEeCCCCCc-------------------
Confidence            4457899999999999999999999887643        1455667888888876432100                   


Q ss_pred             HHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCC----CCCCCCccccCceEEEEEEecCCeEEEEee
Q 013898          113 ACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGA----KPSSPPVILDNLAVIAEVQLYGDVVLRYVS  177 (434)
Q Consensus       113 ~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga----~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd  177 (434)
                            ...+.+-.+++|.|+|+++++++++++|+    +++.+|...........++++.|..+.|.+
T Consensus        61 ------~~~~~~~~~l~~~v~dv~~~~~~l~~~g~~~g~~i~~~~~~~~~g~~~~~~~DPdG~~iel~~  123 (134)
T 3fcd_A           61 ------IPDGIARVAICIDVSDIDSLHTKLSPALENLPADQVEPLKNMPYGQREFQVRMPDGDWLNFTA  123 (134)
T ss_dssp             -------------EEEEEECSCHHHHHHHHHHHHTTSCGGGEEEEEECTTSEEEEEEECTTSCEEEEEE
T ss_pred             ------CCCCCceEEEEEEeCCHHHHHHHHHhcCCccCCccccCCcccCCCcEEEEEECCCCCEEEEEE
Confidence                  00112235899999999999999997664    333344332222234445555555555554

>2ehz_A 1,2-dihydroxynaphthalene dioxygenase; extradiol dioxygenase, protein substrate complex, oxidoreduc; 1.35A {Pseudomonas SP} PDB: 2ei0_A* 2ei1_A* 2ei3_A* 2ei2_A

Probab=98.78  E-value=3.1e-08  Score=96.19  Aligned_cols=118  Identities=13%  Similarity=0.111  Sum_probs=80.9

Q ss_pred             cceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHH
Q 013898          204 YGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYL  283 (434)
Q Consensus       204 ~~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl  283 (434)
                      +.+.+|+||++.|+|++++++||+++|||+......   ..       ..++....+...+.|...              
T Consensus         5 m~i~~i~hv~l~v~Dl~~a~~FY~~~LG~~~~~~~~---~~-------~~~~~~~~~~~~l~l~~~--------------   60 (302)
T 2ehz_A            5 AAVIELGYMGISVKDPDAWKSFATDMLGLQVLDEGE---KD-------RFYLRMDYWHHRIVVHHN--------------   60 (302)
T ss_dssp             CCEEEEEEEEEECSCHHHHHHHHHHTTCCEEECCSC---SS-------EEEEESSSBSCSEEEESS--------------
T ss_pred             ccccEeeEEEEEeCCHHHHHHHHHhcCCCEEEeccC---Cc-------ceEEEeCCCceEEEEecC--------------
Confidence            568999999999999999999999999999865311   00       122333222333444322              


Q ss_pred             hhcCCCCceEEEEEeC---CHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCc
Q 013898          284 EHNEGAGVQHLALVSE---DIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQG  360 (434)
Q Consensus       284 ~~~~G~GvqHIAf~vd---DI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g  360 (434)
                         ...|++|+||.|+   |+++++++|+++    |+++...| ...   ...+             .....++-+|++|
T Consensus        61 ---~~~~~~~~~~~v~~~~dl~~~~~~l~~~----G~~~~~~~-~~~---~~~~-------------~~~~~~~~~DPdG  116 (302)
T 2ehz_A           61 ---GQDDLEYLGWRVAGKPEFEALGQKLIDA----GYKIRICD-KVE---AQER-------------MVLGLMKTEDPGG  116 (302)
T ss_dssp             ---CCSEEEEEEEEESSHHHHHHHHHHHHHT----TCCCEECC-HHH---HHHH-------------TEEEEEEEECTTS
T ss_pred             ---CCCCeeEEEEEECCHHHHHHHHHHHHHC----CCcEEECC-ccc---cccc-------------cceEEEEEECCCC
Confidence               1256899999995   799999999999    99987653 220   0000             1123557788999


Q ss_pred             eEEEEEccc
Q 013898          361 TLLQIFTKP  369 (434)
Q Consensus       361 ~llqifT~~  369 (434)
                      +.+.+++.+
T Consensus       117 ~~iel~~~~  125 (302)
T 2ehz_A          117 NPTEIFWGP  125 (302)
T ss_dssp             CEEEEEEEE
T ss_pred             CEEEEEECC
Confidence            999999864

>3hpy_A Catechol 2,3-dioxygenase; repeated motifs, aromatic hydrocarbons catabolism, iron, oxidoreductase; 1.94A {Pseudomonas SP} PDB: 3hpv_A 3hq0_A*

Probab=98.78  E-value=3.9e-08  Score=95.72  Aligned_cols=116  Identities=16%  Similarity=0.227  Sum_probs=81.5

Q ss_pred             ceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEc-CCC-ceEEEecccCCCCCCCchHHHH
Q 013898          205 GIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLAN-NDE-MVLLPMNEPVFGTKRKSQIQTY  282 (434)
Q Consensus       205 ~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~-~~g-~v~i~L~e~~~g~~~~s~i~~f  282 (434)
                      .+++|+||++.|+|++++.+||+++|||+......   ..       ...+.. ... ...+.+...             
T Consensus         5 ~i~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~---~~-------~~~l~~~~~~~~~~l~l~~~-------------   61 (309)
T 3hpy_A            5 GVLRPGHAQVRVLNLEEGIHFYRNVLGLVETGRDD---QG-------RVYFKCWDERDHSCYIIREA-------------   61 (309)
T ss_dssp             SEEEEEEEEEEESSHHHHHHHHHHTSCCEEEEECT---TS-------CEEEECTTCCBSCSEEEEEC-------------
T ss_pred             ccceeeEEEEEcCCHHHHHHHHHhccCCEEEEEcC---CC-------eEEEEeccCCCceEEEEEeC-------------
Confidence            57899999999999999999999999999875421   01       122322 221 133444332             


Q ss_pred             HhhcCCCCceEEEEEeCC---HHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCC
Q 013898          283 LEHNEGAGVQHLALVSED---IFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQ  359 (434)
Q Consensus       283 l~~~~G~GvqHIAf~vdD---I~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~  359 (434)
                          ..+|++|+||.|+|   ++++.++|+++    |+++...| ..-     .+             .....+|-+|++
T Consensus        62 ----~~~~~~h~a~~v~~~~dl~~~~~~l~~~----G~~~~~~~-~~~-----~~-------------~~~~~~~f~DPd  114 (309)
T 3hpy_A           62 ----DTAGIDFFGFKVLDKATLEKLDADLQAY----GLTTTRIP-AGE-----ML-------------ETGERVRFELPS  114 (309)
T ss_dssp             ----SSCEEEEEEEEESCHHHHHHHHHHHHHH----TCCCEEEC-TTS-----ST-------------TBCCEEEEECTT
T ss_pred             ----CCCceeEEEEEECCHHHHHHHHHHHHhC----CCceeecc-CCc-----cC-------------CCeeEEEEECCC
Confidence                23579999999997   99999999999    99987654 210     00             012356788999


Q ss_pred             ceEEEEEcccc
Q 013898          360 GTLLQIFTKPV  370 (434)
Q Consensus       360 g~llqifT~~~  370 (434)
                      |..+++++.+-
T Consensus       115 G~~iel~~~~~  125 (309)
T 3hpy_A          115 GHLIELYAEKT  125 (309)
T ss_dssp             SCEEEEESCBC
T ss_pred             CCEEEEEEccc
Confidence            99999998653

>3rhe_A NAD-dependent benzaldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, SGX; 2.05A {Legionella pneumophila}

Probab=98.77  E-value=3.4e-08  Score=86.02  Aligned_cols=119  Identities=11%  Similarity=0.106  Sum_probs=75.9

Q ss_pred             eeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhh
Q 013898          206 IRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEH  285 (434)
Q Consensus       206 l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~  285 (434)
                      +.+|+||.+.|+|++++++||+++|||+......    .     .  ..+..+ +...+.|.....  ...       ..
T Consensus         4 ~~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~----~-----~--~~~~~~-~g~~l~l~~~~~--~~~-------~~   62 (148)
T 3rhe_A            4 LSDPNLVLFYVKNPAKSEEFYKNLLDTQPIESSP----T-----F--AMFVMK-TGLRLGLWAQEE--IEP-------KA   62 (148)
T ss_dssp             ---CEEEEEEESCHHHHHHHHHHHHTCCCSEECS----S-----E--EEEECT-TSCEEEEEEGGG--CSS-------CC
T ss_pred             cccccEEEEEeCCHHHHHHHHHHHcCCEEeccCC----C-----E--EEEEcC-CCcEEEEecCCc--CCc-------cc
Confidence            5789999999999999999999999999875421    0     1  122322 235566543211  000       00


Q ss_pred             cCCCCceEEEEEeCC---HHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceE
Q 013898          286 NEGAGVQHLALVSED---IFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTL  362 (434)
Q Consensus       286 ~~G~GvqHIAf~vdD---I~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~l  362 (434)
                      ..+.|..||+|.|+|   +++++++|+++    |++++.. |...        +       +    . ..++-+|++|++
T Consensus        63 ~~~~~~~~l~f~v~d~~dvd~~~~~l~~~----G~~i~~~-p~~~--------~-------~----G-~~~~~~DPdG~~  117 (148)
T 3rhe_A           63 HQTGGGMELSFQVNSNEMVDEIHRQWSDK----EISIIQP-PTQM--------D-------F----G-YTFVGVDPDEHR  117 (148)
T ss_dssp             C----CEEEEEECSCHHHHHHHHHHHHHT----TCCEEEE-EEEE--------T-------T----E-EEEEEECTTCCE
T ss_pred             cCCCCeEEEEEEcCCHHHHHHHHHHHHhC----CCEEEeC-Ceec--------C-------C----C-cEEEEECCCCCE
Confidence            123557899999988   99999999999    9998863 2321        0       0    1 245677888998


Q ss_pred             EEEEcccc
Q 013898          363 LQIFTKPV  370 (434)
Q Consensus       363 lqifT~~~  370 (434)
                      +++++..-
T Consensus       118 iel~~~~~  125 (148)
T 3rhe_A          118 LRIFCLKR  125 (148)
T ss_dssp             EEEEEEC-
T ss_pred             EEEEEcCh
Confidence            88887653

>1kw3_B 2,3-dihydroxybiphenyl dioxygenase; four TIME repetitions of the beta-alpha-beta-BETA-beta motif oxidoreductase; 1.45A {Pseudomonas SP} SCOP: d.32.1.3 d.32.1.3 PDB: 1dhy_A 1eiq_A 1eir_A* 1eil_A 1kw6_B* 1kw8_B* 1kw9_B* 1kwb_B 1kwc_B*

Probab=98.77  E-value=4.7e-08  Score=94.17  Aligned_cols=115  Identities=17%  Similarity=0.229  Sum_probs=79.2

Q ss_pred             eeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhh
Q 013898          206 IRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEH  285 (434)
Q Consensus       206 l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~  285 (434)
                      +++|+||.+.|+|++++++||+++|||+......    .       ...+..++..+.+.+...                
T Consensus         2 i~~i~hv~l~v~Dl~~a~~FY~~~lG~~~~~~~~----~-------~~~l~~~~~~~~l~~~~~----------------   54 (292)
T 1kw3_B            2 IERLGYLGFAVKDVPAWDHFLTKSVGLMAAGSAG----D-------AALYRADQRAWRIAVQPG----------------   54 (292)
T ss_dssp             CCEEEEEEEEESCHHHHHHHHHHTTCCEEEEEET----T-------EEEEESSSBSCSEEEEEC----------------
T ss_pred             ceeEEEEEEEeCCHHHHHHHHHhcCCCEEeecCC----C-------eEEEEcCCceEEEEEccC----------------
Confidence            6789999999999999999999999999875421    0       112333222222332211                


Q ss_pred             cCCCCceEEEEEeC---CHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceE
Q 013898          286 NEGAGVQHLALVSE---DIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTL  362 (434)
Q Consensus       286 ~~G~GvqHIAf~vd---DI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~l  362 (434)
                       ...|+.|+||.|+   |+++++++|+++    |+++...| ....+   .+             -....++-+|++|+.
T Consensus        55 -~~~~~~~~~f~v~~~~dl~~~~~~l~~~----G~~~~~~~-~~~~~---~~-------------~~~~~~~~~DPdG~~  112 (292)
T 1kw3_B           55 -ELDDLAYAGLEVDDAAALERMADKLRQA----GVAFTRGD-EALMQ---QR-------------KVMGLLCLQDPFGLP  112 (292)
T ss_dssp             -TTCEEEEEEEECSSHHHHHHHHHHHHHH----TCCCEECC-HHHHH---HH-------------TCSEEEEEECTTSCE
T ss_pred             -CCCCccEEEEEECCHHHHHHHHHHHHHc----CCeEeecC-ccccc---cc-------------CceEEEEEECCCCCE
Confidence             1356899999998   999999999999    99988653 32100   00             012355678889999


Q ss_pred             EEEEccc
Q 013898          363 LQIFTKP  369 (434)
Q Consensus       363 lqifT~~  369 (434)
                      +.++..+
T Consensus       113 iel~~~~  119 (292)
T 1kw3_B          113 LEIYYGP  119 (292)
T ss_dssp             EEEEECC
T ss_pred             EEEEECc
Confidence            9998754

>2rk9_A Glyoxalase/bleomycin resistance protein/dioxygena; NYSGXRC, structural genomics, protein structur initiative II; 1.60A {Vibrio splendidus}

Probab=98.76  E-value=8.6e-08  Score=82.45  Aligned_cols=96  Identities=11%  Similarity=0.062  Sum_probs=64.8

Q ss_pred             EEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCChhHH
Q 013898           35 HVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHAAC  114 (434)
Q Consensus        35 HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (434)
                      .+.|.|+|++++++||+++|||++...... .     ....++.|+..+.|..+.....           ..     .. 
T Consensus         8 ~~~l~v~Dl~~s~~FY~~~LG~~~~~~~~~-~-----~~~~l~~g~~~l~l~~~~~~~~-----------~~-----~~-   64 (145)
T 2rk9_A            8 VPELYCFDINVSQSFFVDVLGFEVKYERPD-E-----EFVYLTLDGVDVMLEGIAGKSR-----------KW-----LS-   64 (145)
T ss_dssp             EEEEEESSHHHHHHHHHHTTCCEEEEEEGG-G-----TEEEEEETTEEEEEEEC--------------------------
T ss_pred             eEEEEECCHHHHHHHHHhccCCEEEeecCC-C-----CEEEEEcCCeEEEEEeccCCCc-----------cc-----cc-
Confidence            589999999999999999999998854321 1     1344667888888875421100           00     00 


Q ss_pred             hHHHHhcCCceeEEEEEecCHHHHHHHHHH-cCCCCCCCCc
Q 013898          115 RSFAASHGLAARSIAVEVEDADVAFNTSVA-HGAKPSSPPV  154 (434)
Q Consensus       115 ~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~-~Ga~~~~~p~  154 (434)
                      .......+.|+. ++|.|+|++++++++++ +|++++.+|.
T Consensus        65 ~~~~~~~~~g~~-~~~~v~dvd~~~~~l~~~~G~~~~~~~~  104 (145)
T 2rk9_A           65 GDLEFPLGSGVN-FQWDVIDIEPLYQRVNESAADSIYLALE  104 (145)
T ss_dssp             --CCSSTTTTEE-EEEECSCHHHHHHHHHHHHGGGEEEEEE
T ss_pred             CccccCCCCceE-EEEEECCHHHHHHHHHhhCCCeEecCcc
Confidence            000012345776 99999999999999999 9998766554

>3r6a_A Uncharacterized protein; PSI biology, structural genomics, NEW YORK structural genomi research consortium, putative glyoxalase I; 1.76A {Methanosarcina mazei}

Probab=98.76  E-value=3.4e-08  Score=85.79  Aligned_cols=124  Identities=10%  Similarity=0.160  Sum_probs=76.3

Q ss_pred             ceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHh
Q 013898          205 GIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLE  284 (434)
Q Consensus       205 ~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~  284 (434)
                      .++++. +++.|+|++++++||+++|||+.......  ..   .++..  ...  +.  +.+....     ...    . 
T Consensus         4 ~i~~i~-i~l~v~Dl~~a~~FY~~vLG~~~~~~~~~--~~---~~~~~--~~~--~~--~~l~~~~-----~~~----~-   61 (144)
T 3r6a_A            4 KILQIL-SRLYVADLNPALEFYEELLETPVAMRFEI--PQ---TGVEL--AQI--ST--ILLIAGS-----EEA----L-   61 (144)
T ss_dssp             CEEEEE-EEEEESCHHHHHHHHHHHTTCCCCEECCC--SC---SSCEE--EEE--TT--EEEEESC-----HHH----H-
T ss_pred             EEEEEE-EEEEECCHHHHHHHHHHhcCCEEEEEecc--CC---ccEEE--EEe--cc--EEEecCC-----ccc----C-
Confidence            467787 99999999999999999999998765431  11   11211  111  12  2232221     101    1 


Q ss_pred             hcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEE
Q 013898          285 HNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQ  364 (434)
Q Consensus       285 ~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llq  364 (434)
                        ...+..|++|.|+|+++++++|+++    |++++..| ...        +       .    . ..++-+|++|++++
T Consensus        62 --~~~~~~hl~f~V~d~d~~~~~l~~~----G~~v~~~p-~~~--------~-------~----G-~~~~~~DPdG~~ie  114 (144)
T 3r6a_A           62 --KPFRNTQATFLVDSLDKFKTFLEEN----GAEIIRGP-SKV--------P-------T----G-RNMTVRHSDGSVIE  114 (144)
T ss_dssp             --GGGGGCCEEEEESCHHHHHHHHHHT----TCEEEEEE-EEE--------T-------T----E-EEEEEECTTSCEEE
T ss_pred             --CCCcceEEEEEeCCHHHHHHHHHHc----CCEEecCC-ccC--------C-------C----c-eEEEEECCCCCEEE
Confidence              1124689999999999999999999    99988643 220        1       0    1 13467788898888


Q ss_pred             EEccccCCCCCeE
Q 013898          365 IFTKPVGDRPTIF  377 (434)
Q Consensus       365 ifT~~~~~r~~~F  377 (434)
                      ++..+-.+.++..
T Consensus       115 l~~~~~~~a~~~~  127 (144)
T 3r6a_A          115 YVEHSKIEAENLY  127 (144)
T ss_dssp             EEEECC-------
T ss_pred             EEEcCCcchhhhh
Confidence            8876655444433

>3itw_A Protein TIOX; bleomycin resistance fold, bisintercalator, solvent-exposed residue, thiocoraline, protein binding, peptide binding Pro; 2.15A {Micromonospora SP}

Probab=98.73  E-value=1.2e-07  Score=80.42  Aligned_cols=119  Identities=13%  Similarity=0.096  Sum_probs=77.3

Q ss_pred             eeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcCCCC
Q 013898          211 HAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAG  290 (434)
Q Consensus       211 Hv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G~G  290 (434)
                      .+.+.|.|++++++||+++|||+.......  .+.    +....+..+  ...|.|.....   ....     ...++.+
T Consensus         5 ~i~l~v~D~~~a~~FY~~~lG~~~~~~~~~--~g~----~~~~~l~~~--~~~l~l~~~~~---~~~~-----~~~~~~~   68 (137)
T 3itw_A            5 VVELAYTDPDRAVDWLVRVFGFRLLLRQPA--IGT----IRHADLDTG--GGIVMVRRTGE---PYTV-----SCAGGHT   68 (137)
T ss_dssp             EEEEEESCHHHHHHHHHHHHCCEEEEEESS--SSS----CSEEEEECS--SSEEEEEETTC---CSSC-----EECCCCC
T ss_pred             EEEEEECCHHHHHHHHHHccCCEEEEEecC--CCc----EEEEEEecC--CeEEEEEecCC---CcCc-----cCCCCCc
Confidence            578899999999999999999998866531  111    222233333  34556654321   1100     1212334


Q ss_pred             ceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEEEEccc
Q 013898          291 VQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFTKP  369 (434)
Q Consensus       291 vqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llqifT~~  369 (434)
                      +.|++|.|+|+++++++|+++    |++++..| ....      .             .....+-+|++|+++++++..
T Consensus        69 ~~~~~~~v~dv~~~~~~l~~~----G~~~~~~~-~~~~------~-------------g~~~~~~~DPdG~~iel~~~~  123 (137)
T 3itw_A           69 CKQVIVWVSDVDEHFMRSTAA----GADIVQPL-QDKP------W-------------GLRQYLVRDLEGHLWEFTRHL  123 (137)
T ss_dssp             CCEEEEEESCHHHHHHHHHHT----TCEEEEEE-EEET------T-------------TEEEEEEECSSSCEEEEEECC
T ss_pred             EEEEEEEeCCHHHHHHHHHHc----CCeeccCc-cccC------C-------------CcEEEEEECCCCCEEEEEEEc
Confidence            459999999999999999999    99988643 3210      0             112456688899999988754

>2zyq_A Probable biphenyl-2,3-DIOL 1,2-dioxygenase BPHC; extradiol, DHSA, TB, catechol, cholesterol, steroid, aromatic hydrocarbons catabolism; HET: TAR; 2.00A {Mycobacterium tuberculosis} PDB: 2zi8_A*

Probab=98.72  E-value=6e-08  Score=93.76  Aligned_cols=115  Identities=16%  Similarity=0.124  Sum_probs=79.4

Q ss_pred             ceeeeeeeeEecCCHHHHHHHHHHhhCCeeee-eeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHH
Q 013898          205 GIRRLDHAVGNVPELAPAVAYVKSFTGFHEFA-EFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYL  283 (434)
Q Consensus       205 ~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~-~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl  283 (434)
                      .+++|+|+++.|+|++++++||+++|||+... ..    ..       ..++..++..+.+.+...              
T Consensus         2 ~i~~i~hv~l~v~Dl~~a~~FY~~~lG~~~~~~~~----~~-------~~~~~~~~~~~~l~l~~~--------------   56 (300)
T 2zyq_A            2 SIRSLGYLRIEATDMAAWREYGLKVLGMVEGKGAP----EG-------ALYLRMDDFPARLVVVPG--------------   56 (300)
T ss_dssp             CCCEEEEEEEEESCHHHHHHHHHHTSCCEECSSCC----SS-------CEEEESSSSSCSEEEEEC--------------
T ss_pred             CcceEEEEEEEeCCHHHHHHHHHHccCCEEeccCC----CC-------eEEEEeCCCcEEEEEecC--------------
Confidence            46899999999999999999999999999864 21    11       112333333334444331              


Q ss_pred             hhcCCCCceEEEEEeCC---HHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCc
Q 013898          284 EHNEGAGVQHLALVSED---IFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQG  360 (434)
Q Consensus       284 ~~~~G~GvqHIAf~vdD---I~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g  360 (434)
                         ...|++|+||.|+|   +++++++|+++    |+++...| ....   ..+             .....++-+|++|
T Consensus        57 ---~~~~~~~~~~~v~~~~dl~~~~~~l~~~----G~~~~~~~-~~~~---~~~-------------~~~~~~~~~DPdG  112 (300)
T 2zyq_A           57 ---EHDRLLEAGWECANAEGLQEIRNRLDLE----GTPYKEAT-AAEL---ADR-------------RVDEMIRFADPSG  112 (300)
T ss_dssp             ---SSCEEEEEEEECSSHHHHHHHHHHHHHH----TCCCEECC-HHHH---HHH-------------TCSEEEEEECTTC
T ss_pred             ---CCCCcceEEEEeCCHHHHHHHHHHHHHc----CCeEEeCC-hhhc---ccc-------------cceEEEEEECCCC
Confidence               13579999999975   88999999999    99987643 2210   000             0123557788999


Q ss_pred             eEEEEEcc
Q 013898          361 TLLQIFTK  368 (434)
Q Consensus       361 ~llqifT~  368 (434)
                      +.+++++.
T Consensus       113 ~~iel~~~  120 (300)
T 2zyq_A          113 NCLEVFHG  120 (300)
T ss_dssp             CEEEEEEC
T ss_pred             CEEEEEEc
Confidence            99999987

>2rbb_A Glyoxalase/bleomycin resistance protein/dioxygena; structural genomics, PSI-2, PROT structure initiative; 1.82A {Burkholderia phytofirmans}

Probab=98.70  E-value=1.4e-08  Score=86.87  Aligned_cols=120  Identities=12%  Similarity=0.066  Sum_probs=76.2

Q ss_pred             eeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHH----
Q 013898          207 RRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTY----  282 (434)
Q Consensus       207 ~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~f----  282 (434)
                      .+++|+++.|+|++++++||+++|||+......  ..     +.  ..+..  +...+.+....       .++.+    
T Consensus         7 ~~i~hv~l~v~D~~~a~~FY~~~lG~~~~~~~~--~~-----~~--~~~~~--~~~~l~l~~~~-------~~~~~~~~~   68 (141)
T 2rbb_A            7 ADLSYVNIFTRDIVAMSAFYQQVFGFQEIESIR--SP-----IF--RGLDT--GKSCIGFNAHE-------AYELMQLAQ   68 (141)
T ss_dssp             CEEEEEEEECSCHHHHHHHHHHHHCCEECGGGC--BT-----TE--EEEEC--SSSEEEEECTH-------HHHHTTCGG
T ss_pred             CcccEEEEEECCHHHHHHHHHHhcCCeeecccC--CC-----ce--EEeec--CCEEEEEcCcc-------ccccccccc
Confidence            489999999999999999999999999864321  11     11  11222  22344443210       00000    


Q ss_pred             HhhcCCCCceEEEEEeC---CHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCC
Q 013898          283 LEHNEGAGVQHLALVSE---DIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQ  359 (434)
Q Consensus       283 l~~~~G~GvqHIAf~vd---DI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~  359 (434)
                      .....+.|+ |++|.|+   |+++++++|+++    |++++..| ...        +           .....++-+|++
T Consensus        69 ~~~~~~~~~-~~~f~v~~~~dv~~~~~~l~~~----G~~~~~~~-~~~--------~-----------~g~~~~~~~DPd  123 (141)
T 2rbb_A           69 FSETSGIKF-LLNFDVDTKEAVDKLVPVAIAA----GATLIKAP-YET--------Y-----------YHWYQAVLLDPE  123 (141)
T ss_dssp             GCCCBSCCE-EEEEECSCHHHHHHHHHHHHHT----TCEEEEEE-EEC--------T-----------TSEEEEEEECTT
T ss_pred             cCCCCCCeE-EEEEEcCCHHHHHHHHHHHHHc----CCeEecCc-ccc--------C-----------CccEEEEEECCC
Confidence            001134565 9999999   599999999999    99988643 321        0           012345678888


Q ss_pred             ceEEEEEccc
Q 013898          360 GTLLQIFTKP  369 (434)
Q Consensus       360 g~llqifT~~  369 (434)
                      |+++++++..
T Consensus       124 G~~iel~~~~  133 (141)
T 2rbb_A          124 RNVFRINNVL  133 (141)
T ss_dssp             SCEEEEEEEC
T ss_pred             CCEEEEEEcc
Confidence            9888887644

>2wl9_A Catechol 2,3-dioxygenase; aromatic hydrocarbons catabolism, iron, oxidoreductase; 1.90A {Rhodococcus SP} PDB: 2wl3_A

Probab=98.69  E-value=6.1e-08  Score=94.13  Aligned_cols=116  Identities=13%  Similarity=0.144  Sum_probs=80.5

Q ss_pred             ceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHh
Q 013898          205 GIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLE  284 (434)
Q Consensus       205 ~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~  284 (434)
                      .+++|+||.+.|+|++++++||+++|||+......   .     +  ...+..++....|.|...               
T Consensus         3 ~i~~i~hv~l~v~Dl~~a~~FY~~~LG~~~~~~~~---~-----~--~~~~~~~~~~~~l~l~~~---------------   57 (305)
T 2wl9_A            3 KVTELGYLGLSVSNLDAWRDYAAGIMGMQVVDDGE---D-----D--RIYLRMDRWHHRIVLHAD---------------   57 (305)
T ss_dssp             CCCEEEEEEEECSCHHHHHHHHTTTTCCEEECCSC---T-----T--EEEEECSSBSCSEEEECS---------------
T ss_pred             ccceeeEEEEEeCCHHHHHHHHHhccCCEEeeccC---C-----C--eEEEEeCCCeEEEEEEEC---------------
Confidence            46799999999999999999999999999864211   1     1  122333332244555432               


Q ss_pred             hcCCCCceEEEEEeC---CHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCce
Q 013898          285 HNEGAGVQHLALVSE---DIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGT  361 (434)
Q Consensus       285 ~~~G~GvqHIAf~vd---DI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~  361 (434)
                        ...++.|+||.|+   |+++++++|+++    |+++...| .....   .+             -....++-+|++|+
T Consensus        58 --~~~~~~~~~f~v~~~~dl~~~~~~l~~~----G~~~~~~p-~~~~~---~~-------------~~~~~~~~~DPdG~  114 (305)
T 2wl9_A           58 --GSDDLAYIGWRVAGPVELDELAEQLKNA----GIPFEVAS-DADAA---ER-------------RVLGLVKLHDPGGN  114 (305)
T ss_dssp             --SCCEEEEEEEECSSHHHHHHHHHHHHHT----TCCCEECC-HHHHH---HT-------------TEEEEEEEECTTCC
T ss_pred             --CCCCeEEEEEEECCHHHHHHHHHHHHHC----CCceEeCC-ccccc---cc-------------CcEEEEEEECCCCC
Confidence              1356899999997   699999999999    99987643 32100   00             01235677889999


Q ss_pred             EEEEEcc
Q 013898          362 LLQIFTK  368 (434)
Q Consensus       362 llqifT~  368 (434)
                      .+++++.
T Consensus       115 ~iel~~~  121 (305)
T 2wl9_A          115 PTEIFYG  121 (305)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEC
Confidence            9999987

>3bt3_A Glyoxalase-related enzyme, ARAC type; VOC superfamily, PSI-2, NYSGXRC, structural genomics, prote structure initiative; 2.50A {Clostridium phytofermentans}

Probab=98.64  E-value=3.6e-07  Score=78.84  Aligned_cols=123  Identities=19%  Similarity=0.129  Sum_probs=72.5

Q ss_pred             CCCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCC
Q 013898           27 RFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASL  106 (434)
Q Consensus        27 ~~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~  106 (434)
                      +..+.+++||.|.|+|++++++||+++|||++........+   .. . +  | ..|.|.. ..+.   .+        .
T Consensus        16 ~~~~~~~~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~---~~-~-~--g-~~l~l~~-~~~~---~~--------~   75 (148)
T 3bt3_A           16 RGYVVRENGPVYFTKDMDKTVKWFEEILGWSGDIVARDDEG---FG-D-Y--G-CVFDYPS-EVAV---AH--------L   75 (148)
T ss_dssp             CSCEEEECCCEEEESCHHHHHHHHHHTTCCEEEEEEECTTS---CE-E-E--E-EEESSCT-TTTS---CC---------
T ss_pred             cCceEEeeeEEEEECCHHHHHHHHHhccCCEEEeeeecCCC---cc-E-E--c-cEEEEec-cCCC---cc--------c
Confidence            34578999999999999999999999999998642111111   11 1 2  3 3344411 1110   00        0


Q ss_pred             CCCChhHHhHHHHhc---CC-ceeEEEE-EecCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEee
Q 013898          107 PTFDHAACRSFAASH---GL-AARSIAV-EVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVS  177 (434)
Q Consensus       107 ~~~~~~~~~~~l~~h---G~-gv~~Iaf-~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd  177 (434)
                              ......|   |. +....+| .|+|+++++++++++|++++.+|...........++++.|..+.|.+
T Consensus        76 --------~~~~~~~~~~g~~~~~~~~~~~v~dvd~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~iel~~  143 (148)
T 3bt3_A           76 --------TPFRGFHLFKGEPIKGVAGFMMIEGIDALHKYVKENGWDQISDIYTQPWGARECSITTTDGCILRFFE  143 (148)
T ss_dssp             ---------CCCSEEEEESCCCSSEEEEEEEECHHHHHHHHHHTTCCCBCCCEEETTTEEEEEEECTTSCEEEEEE
T ss_pred             --------ccccccceeeccCCCccEEEEEcCCHHHHHHHHHHcCCccccCcccCCCccEEEEEECCCCCEEEEee
Confidence                    0000001   10 1112366 99999999999999999987777543222334455566666666655

>1twu_A Hypothetical protein YYCE; structural genomics, protein structure initiative, MCSG, DUP of the alpha-beta sandwichs. bacillus subtilis, PSI; 2.00A {Bacillus subtilis} SCOP: d.32.1.8

Probab=98.63  E-value=2.5e-07  Score=78.77  Aligned_cols=117  Identities=9%  Similarity=0.006  Sum_probs=75.1

Q ss_pred             ceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCC--EEEEEEcCCCCCCCcccccCCCCCCCCC
Q 013898           31 NRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGD--LRFVFTAPYSPSISDAADAGNSSASLPT  108 (434)
Q Consensus        31 ~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~--i~~vl~~p~~~~~~~~~~~~~~~~~~~~  108 (434)
                      ...-||.+.|+|++++++||++.|||++..+...+.   ......++.++  ..+.+.......                
T Consensus        10 ~~~~~i~l~v~Dl~~s~~FY~~~LG~~~~~~~~~~~---~~~~~~~~~~~~~~~l~l~~~~~~~----------------   70 (139)
T 1twu_A           10 AAQIRIARPTGQLDEIIRFYEEGLCLKRIGEFSQHN---GYDGVMFGLPHADYHLEFTQYEGGS----------------   70 (139)
T ss_dssp             CSCEEEEEECSCHHHHHHHHTTTSCCCEEEEEEEET---TEEEEEEESSSSSEEEEEEEETTCC----------------
T ss_pred             cceeEEeeEeCCHHHHHHHHHhcCCcEEEEeccCCC---CeeEEEEecCCCceEEEEeecCCCC----------------
Confidence            345678888999999999999999999886532101   12334455543  445554321100                


Q ss_pred             CChhHHhHHHHhcCCceeEEEEEecCH---HHHHHHHHHcCCCCCC--CCccccCceEEEEEEecCCeEEEEeec
Q 013898          109 FDHAACRSFAASHGLAARSIAVEVEDA---DVAFNTSVAHGAKPSS--PPVILDNLAVIAEVQLYGDVVLRYVSY  178 (434)
Q Consensus       109 ~~~~~~~~~l~~hG~gv~~Iaf~V~Dv---d~a~~ra~~~Ga~~~~--~p~~~~~~~~~~~i~~~Gg~~~~fvd~  178 (434)
                               ....+.+..|++|.|+|+   ++++++++++|+++..  .|......  . .++++.|..++|+++
T Consensus        71 ---------~~~~~~~~~hi~~~v~d~~~l~~~~~~l~~~G~~~~~~~~~~~~~~g--~-~~~DPdG~~iel~~~  133 (139)
T 1twu_A           71 ---------TAPVPHPDSLLVFYVPNAVELAAITSKLKHMGYQEVESENPYWSNGG--V-TIEDPDGWRIVFMNS  133 (139)
T ss_dssp             ---------CCCCCCTTCEEEEECCCHHHHHHHHHHHHHTTCCEECCSSHHHHSSE--E-EEECTTCCEEEEESS
T ss_pred             ---------CCCCCCCccEEEEEeCCcchHHHHHHHHHHcCCcCcCCCCcccCCCC--e-EEECCCCCEEEEEEc
Confidence                     001344667999999999   9999999999998762  22221111  1 266777777777653

>2rk9_A Glyoxalase/bleomycin resistance protein/dioxygena; NYSGXRC, structural genomics, protein structur initiative II; 1.60A {Vibrio splendidus}

Probab=98.55  E-value=4.2e-07  Score=78.03  Aligned_cols=128  Identities=14%  Similarity=0.072  Sum_probs=73.5

Q ss_pred             eeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcCCCC
Q 013898          211 HAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAG  290 (434)
Q Consensus       211 Hv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G~G  290 (434)
                      .+.+.|+|++++++||+++|||+......  ..     +.  ..+..  +...+.|.....  ...+..........+.|
T Consensus         8 ~~~l~v~Dl~~s~~FY~~~LG~~~~~~~~--~~-----~~--~~l~~--g~~~l~l~~~~~--~~~~~~~~~~~~~~~~g   74 (145)
T 2rk9_A            8 VPELYCFDINVSQSFFVDVLGFEVKYERP--DE-----EF--VYLTL--DGVDVMLEGIAG--KSRKWLSGDLEFPLGSG   74 (145)
T ss_dssp             EEEEEESSHHHHHHHHHHTTCCEEEEEEG--GG-----TE--EEEEE--TTEEEEEEEC-------------CCSSTTTT
T ss_pred             eEEEEECCHHHHHHHHHhccCCEEEeecC--CC-----CE--EEEEc--CCeEEEEEeccC--CCcccccCccccCCCCc
Confidence            57889999999999999999999875322  11     11  12333  234566654310  00000000011223567


Q ss_pred             ceEEEEEeCCHHHHHHHHHH-hcCCCCceeccCCCch-hhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEEEEcc
Q 013898          291 VQHLALVSEDIFRTLREMRK-RSGVGGFEFMPSPPPT-YYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFTK  368 (434)
Q Consensus       291 vqHIAf~vdDI~~av~~L~~-~~~~~Gv~fl~~pP~~-YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llqifT~  368 (434)
                      ++ ++|.|+||++++++|++ +    |++++..| .. .|..-..  .           .....++-+|++|+++.++..
T Consensus        75 ~~-~~~~v~dvd~~~~~l~~~~----G~~~~~~~-~~~~~g~~~~--~-----------~~~~~~~~~DPdG~~iel~~~  135 (145)
T 2rk9_A           75 VN-FQWDVIDIEPLYQRVNESA----ADSIYLAL-ESKSYQCGDS--I-----------ATQKQFMVQTPDGYLFRFCQD  135 (145)
T ss_dssp             EE-EEEECSCHHHHHHHHHHHH----GGGEEEEE-EEEEC-------C-----------CEEEEEEEECTTCCEEEEEEC
T ss_pred             eE-EEEEECCHHHHHHHHHhhC----CCeEecCc-cccccccCCC--C-----------CcceEEEEECCCCCEEEEEEc
Confidence            76 99999999999999999 9    99988643 21 1111000  0           011234567888888887765


Q ss_pred             cc
Q 013898          369 PV  370 (434)
Q Consensus       369 ~~  370 (434)
                      +.
T Consensus       136 ~~  137 (145)
T 2rk9_A          136 IH  137 (145)
T ss_dssp             --
T ss_pred             CC
Confidence            43

>1ecs_A Bleomycin resistance protein; arm-exchange, antibiotic inhibitor; HET: PG4; 1.70A {Klebsiella pneumoniae} SCOP: d.32.1.2 PDB: 1ewj_A* 1niq_B* 1mh6_A

Probab=98.53  E-value=6e-07  Score=75.15  Aligned_cols=111  Identities=16%  Similarity=0.154  Sum_probs=73.0

Q ss_pred             eeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcCC
Q 013898          209 LDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEG  288 (434)
Q Consensus       209 iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G  288 (434)
                      .-|+.+.|+|++++++||++ |||+..+. .   ..     .  ..+..  +...+.|.....   ..          ..
T Consensus         4 ~~~~~l~v~D~~~a~~FY~~-LG~~~~~~-~---~~-----~--~~~~~--~~~~l~l~~~~~---~~----------~~   56 (126)
T 1ecs_A            4 QATPNLPSRDFDSTAAFYER-LGFGIVFR-D---AG-----W--MILQR--GDLMLEFFAHPG---LD----------PL   56 (126)
T ss_dssp             EEEEEEEESCHHHHHHHHHT-TTCEEEEE-C---SS-----E--EEEEE--TTEEEEEEECTT---CC----------GG
T ss_pred             cEEEEEEeCCHHHHHHHHHH-CCCEEEec-C---CC-----E--EEEEe--CCEEEEEEeCCC---CC----------CC
Confidence            34899999999999999998 99998754 1   11     1  12333  235566654320   00          12


Q ss_pred             CCceEEEEEeCCHHHHHHHHHHhcCCCCcee-------ccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCce
Q 013898          289 AGVQHLALVSEDIFRTLREMRKRSGVGGFEF-------MPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGT  361 (434)
Q Consensus       289 ~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~f-------l~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~  361 (434)
                      .+..|++|.|+|+++++++|+++    |+++       +. +|...        +           .....++-+|++|+
T Consensus        57 ~~~~~~~~~v~dv~~~~~~l~~~----G~~~~~~~~~~~~-~~~~~--------~-----------~g~~~~~~~DPdG~  112 (126)
T 1ecs_A           57 ASWFSCCLRLDDLAEFYRQCKSV----GIQETSSGYPRIH-APELQ--------G-----------WGGTMAALVDPDGT  112 (126)
T ss_dssp             GCCCEEEEEESCHHHHHHHHHHT----TCCBCSSSSSEEE-EEEEC--------T-----------TSSEEEEEECTTSC
T ss_pred             CcceEEEEEECCHHHHHHHHHHC----CCccccccCcccc-CCccc--------C-----------cccEEEEEECCCCC
Confidence            46789999999999999999999    9885       32 22210        0           01124566788888


Q ss_pred             EEEEEcccc
Q 013898          362 LLQIFTKPV  370 (434)
Q Consensus       362 llqifT~~~  370 (434)
                      ++++++...
T Consensus       113 ~iel~~~~~  121 (126)
T 1ecs_A          113 LLRLIQNEL  121 (126)
T ss_dssp             EEEEEECCC
T ss_pred             EEEEecchh
Confidence            888876554

>3b59_A Glyoxalase/bleomycin resistance protein/dioxygena; 11004Z, NYSGXRC, PSI-2, structural genomics, Pro structure initiative; 2.53A {Novosphingobium aromaticivorans}

Probab=98.51  E-value=4.5e-07  Score=88.53  Aligned_cols=117  Identities=11%  Similarity=0.127  Sum_probs=81.8

Q ss_pred             cceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCC--CceEEEecccCCCCCCCchHHH
Q 013898          204 YGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANND--EMVLLPMNEPVFGTKRKSQIQT  281 (434)
Q Consensus       204 ~~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~--g~v~i~L~e~~~g~~~~s~i~~  281 (434)
                      +.+.+|+|+.+.|+|++++.+||+++|||+......    .       ...+....  ....|.|.+.            
T Consensus         4 ~~i~~l~~v~l~v~Dl~~a~~FY~~vlG~~~~~~~~----~-------~~~l~~~~~~~~~~l~l~~~------------   60 (310)
T 3b59_A            4 SRVTEIRYVGYGVKDFDAEKAFYADVWGLEPVGEDA----N-------NAWFKAQGADEHHVVQLRRA------------   60 (310)
T ss_dssp             CCEEEEEEEEEEESSHHHHHHHHHHTTCCEEEEECS----S-------EEEEECTTSCCSCSEEEEEC------------
T ss_pred             eecceeeEEEEecCCHHHHHHHHHhCcCCEEeeecC----C-------eEEEEECCCCCCEEEEEEEC------------
Confidence            458899999999999999999999999999875421    0       12333332  1244555432            


Q ss_pred             HHhhcCCCCceEEEEEe---CCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCC
Q 013898          282 YLEHNEGAGVQHLALVS---EDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDD  358 (434)
Q Consensus       282 fl~~~~G~GvqHIAf~v---dDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~  358 (434)
                           ...|+.|+||.|   +|+++++++|+++    |++++..| ..    +..  .           ..-..++-.|+
T Consensus        61 -----~~~~~~~~~~~v~~~~dld~~~~~l~~~----G~~~~~~~-~~----~~~--~-----------~~~~~~~~~DP  113 (310)
T 3b59_A           61 -----DENRIDVIALAADSRSDVDALRASVEAA----GCKVASEP-AV----LAT--P-----------GGGYGFRFFSP  113 (310)
T ss_dssp             -----SSCEEEEEEEEESSHHHHHHHHHHHHHH----TCCBCCCS-EE----CCS--T-----------TCCEEEEEECT
T ss_pred             -----CCCCeeEEEEEeCCHHHHHHHHHHHHhC----CCeEeecC-cc----ccc--c-----------CCceEEEEECC
Confidence                 135789999998   8999999999999    99988643 32    000  0           01234567788


Q ss_pred             CceEEEEEcccc
Q 013898          359 QGTLLQIFTKPV  370 (434)
Q Consensus       359 ~g~llqifT~~~  370 (434)
                      +|+.++++..+-
T Consensus       114 dG~~iel~~~~~  125 (310)
T 3b59_A          114 DGLLFEVSSDVA  125 (310)
T ss_dssp             TSCEEEEEECCC
T ss_pred             CCCEEEEEEccc
Confidence            899999987653

>3lm4_A Catechol 2,3-dioxygenase; NYSGXRC, PSI-II, protein structure initiative, 2hydroxyl 6 OXO 6 phenyl hexa 2-4 dienoic acid, peroxide; HET: HPX; 1.80A {Rhodococcus jostii}

Probab=98.50  E-value=6.4e-07  Score=88.69  Aligned_cols=118  Identities=13%  Similarity=0.036  Sum_probs=79.4

Q ss_pred             CCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCC--EEEEEEcCCCCCCCcccccCCCCCC
Q 013898           28 FRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGD--LRFVFTAPYSPSISDAADAGNSSAS  105 (434)
Q Consensus        28 ~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~--i~~vl~~p~~~~~~~~~~~~~~~~~  105 (434)
                      +.+.+|+||.+.|+|++++.+||+++|||++..+.. +.+  ......+..++  ..+.+.....               
T Consensus       149 ~~~~~l~Hv~l~v~D~~~a~~FY~~vLG~~~~~~~~-~~g--~~~~~~l~~~~~~~~l~~~~~~~---------------  210 (339)
T 3lm4_A          149 IPVKRIDHLNLMSSDVTAVKDSFERHLGFRTTERVV-DGN--VEIGAWMSSNLLGHEVACMRDMT---------------  210 (339)
T ss_dssp             SCCCEEEEEEEEESCHHHHHHHHHHHHCCEEEEEEE-ETT--EEEEEEEESSSSSCSEEEEECTT---------------
T ss_pred             CCcceeeeEEEEcCCHHHHHHHHHHhCCCeEEEEEe-cCC--cEEEEEEEeCCCceEEEEeccCC---------------
Confidence            368999999999999999999999999999886643 122  12233444333  2333332100               


Q ss_pred             CCCCChhHHhHHHHhcCCceeEEEEEecC---HHHHHHHHHHcCCCCCCCCccc-cCceEEEEEEecCCeEEEEee
Q 013898          106 LPTFDHAACRSFAASHGLAARSIAVEVED---ADVAFNTSVAHGAKPSSPPVIL-DNLAVIAEVQLYGDVVLRYVS  177 (434)
Q Consensus       106 ~~~~~~~~~~~~l~~hG~gv~~Iaf~V~D---vd~a~~ra~~~Ga~~~~~p~~~-~~~~~~~~i~~~Gg~~~~fvd  177 (434)
                                    ..+.++.|+||.|+|   +++++++++++|+++...|... .+...+.-++.++|..+++..
T Consensus       211 --------------~~~~~~~Hiaf~v~d~~~v~~~~~~l~~~G~~i~~~p~~~~~~~~~~~y~~DPdG~~iEl~~  272 (339)
T 3lm4_A          211 --------------GGHGKLHHLAFFYGTGQHNIDAVEMFRDYDIQIEAGPDKHGITQSQFLYVFEPGGNRIELFG  272 (339)
T ss_dssp             --------------SCCSEEEEEEEECCCHHHHHHHHHHHHHTTCEEEEEEEEETGGGEEEEEEECTTSCEEEEEC
T ss_pred             --------------CCCCceeEEEEEeCCHHHHHHHHHHHHHCCCeEEeCCcccccCCceEEEEEcCCCCEEEEEE
Confidence                          123468899999999   8999999999999876556431 122334556667776777663

>4ghg_A Homoprotocatechuate 2,3-dioxygenase; oxygen activation, Fe(II), 2-His-1-carboxylate triad, 4-nitrocatechol, OXY complex, oxidoreductase; HET: P6G PG4 DHY; 1.50A {Brevibacterium fuscum} PDB: 1q0o_A 1q0c_A 2iga_A* 2ig9_A 3ojj_A* 3bza_A* 3ojk_A* 3ojt_A* 3ojn_A* 4ghh_A* 4ghc_A 4ghd_A* 4ghe_A* 4ghf_A* 3eck_A* 3ecj_A*

Probab=98.48  E-value=3.8e-07  Score=91.60  Aligned_cols=114  Identities=17%  Similarity=0.111  Sum_probs=79.5

Q ss_pred             ceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCC--ceEEEecccCCCCCCCchHHHH
Q 013898          205 GIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDE--MVLLPMNEPVFGTKRKSQIQTY  282 (434)
Q Consensus       205 ~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g--~v~i~L~e~~~g~~~~s~i~~f  282 (434)
                      .+.+|.||++.|+|++++++||+++|||++..+.+    .       ...+...++  ...+.|.+.             
T Consensus        14 ~I~rl~hV~l~V~DLe~s~~FY~dvLGL~~~~~~~----~-------~~~lr~~~~~~~~~l~l~~~-------------   69 (365)
T 4ghg_A           14 DILRCAYAELVVTDLAKSRNFYVDVLGLHVSYEDE----N-------QIYLRSFEEFIHHNLVLTKG-------------   69 (365)
T ss_dssp             CEEEEEEEEEEESCHHHHHHHHTTTTCCEEEEECS----S-------EEEEECTTCCSSCSEEEEEC-------------
T ss_pred             CCCEEEEEEEEeCCHHHHHHHHhhCCCCEEEEEcC----C-------EEEEEeCCCCcceEEEeccC-------------
Confidence            58999999999999999999999999999875421    1       123333221  222333322             


Q ss_pred             HhhcCCCCceEEEEEeCC---HHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCC
Q 013898          283 LEHNEGAGVQHLALVSED---IFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQ  359 (434)
Q Consensus       283 l~~~~G~GvqHIAf~vdD---I~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~  359 (434)
                          ..+|+.|+||.|.+   ++++.++|+++    |+++...+ ...     .+.             ....++-.|++
T Consensus        70 ----~~~gl~~~a~~v~s~~dLd~~~~~L~~~----Gv~v~~~~-~~~-----~~~-------------~g~~~~f~DPd  122 (365)
T 4ghg_A           70 ----PVAALKAMAFRVRTPEDVDKAEAYYQEL----GCRTERRK-DGF-----VKG-------------IGDALRVEDPL  122 (365)
T ss_dssp             ----SSCEEEEEEEEESSHHHHHHHHHHHHHT----TCCEEEET-TCS-----STT-------------BCSEEEEECTT
T ss_pred             ----CCCCcceEEEEeCCHHHHHHHHHHHHHc----CCcceecc-ccc-----cCC-------------CceEEEEECCC
Confidence                23679999999975   78888999998    99887643 210     000             11356788999


Q ss_pred             ceEEEEEccc
Q 013898          360 GTLLQIFTKP  369 (434)
Q Consensus       360 g~llqifT~~  369 (434)
                      |..+++|..+
T Consensus       123 G~~iEl~~~~  132 (365)
T 4ghg_A          123 GFPYEFFFET  132 (365)
T ss_dssp             SCEEEEECCB
T ss_pred             CCEEEEEEEe
Confidence            9999999754

>4gym_A Glyoxalase/bleomycin resistance protein/dioxygena; PSI-biology, midwest center for structural genomics, MCSG, oxidoreductase; HET: MSE; 1.56A {Conexibacter woesei}

Probab=98.47  E-value=2e-07  Score=80.55  Aligned_cols=122  Identities=16%  Similarity=0.182  Sum_probs=70.4

Q ss_pred             eeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecc-cCCCCCCCchHHHHHh
Q 013898          206 IRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNE-PVFGTKRKSQIQTYLE  284 (434)
Q Consensus       206 l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e-~~~g~~~~s~i~~fl~  284 (434)
                      ..+|+||++.|.|++++++||++ |||.......  +..     . .......  ...+.+.. ..........    ..
T Consensus         7 ~~rl~~V~L~V~Dl~~s~~FY~~-lg~~~~~~~~--~~~-----~-~~~~~~~--~~~~~~~~~~~~~~~~~~~----~~   71 (149)
T 4gym_A            7 QSRLTFVNLPVADVAASQAFFGT-LGFEFNPKFT--DES-----C-ACMVVSE--QAFVMLIDRARFADFTSKP----IA   71 (149)
T ss_dssp             CCCCEEEEEEESCHHHHHHHHHH-TTCEECGGGC--BTT-----E-EEEEEET--TEEEEEEEHHHHGGGCSSC----BC
T ss_pred             CccEEEEEEEeCCHHHHHHHHHH-hCCCcceeec--CCc-----e-eEEeecC--cceEeeecccccccccccc----CC
Confidence            56899999999999999999988 5665543322  111     1 1111111  12222211 0000000000    00


Q ss_pred             hcCCCCceEEEEEeC---CHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCce
Q 013898          285 HNEGAGVQHLALVSE---DIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGT  361 (434)
Q Consensus       285 ~~~G~GvqHIAf~vd---DI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~  361 (434)
                      ...+.+..|+||.|+   |+++.++++++.    |+.++.. |..+        +            --..+|-+|++|+
T Consensus        72 ~~~~~~~~~~a~~v~~~~~vd~~~~~~~~~----g~~~~~~-p~~~--------~------------~~~~~~f~DPDGn  126 (149)
T 4gym_A           72 DATATTEAIVCVSAIDRDDVDRFADTALGA----GGTVARD-PMDY--------G------------FMYGRSFHDLDGH  126 (149)
T ss_dssp             CTTTCBSCEEEEECSSHHHHHHHHHHHHHT----TCEECSC-CEEC--------S------------SEEEEEEECTTCC
T ss_pred             CCCCCCeeEEEEEeccHHHHHHHHHHHHhc----Cceeecc-cccc--------C------------CEEEEEEEcCCCC
Confidence            112445679999996   577888999998    9999864 3431        1            0013577899999


Q ss_pred             EEEEEc
Q 013898          362 LLQIFT  367 (434)
Q Consensus       362 llqifT  367 (434)
                      +++|+.
T Consensus       127 ~iEi~~  132 (149)
T 4gym_A          127 LWEVMW  132 (149)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999985

>3oxh_A RV0577 protein; kinase regulation, antibiotic resistance, mycobacterium tube structural genomics, PSI, protein structure initiative; HET: PMB XYL; 1.75A {Mycobacterium tuberculosis}

Probab=98.47  E-value=2.2e-06  Score=82.68  Aligned_cols=117  Identities=11%  Similarity=0.061  Sum_probs=75.6

Q ss_pred             cceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCC
Q 013898           30 VNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTF  109 (434)
Q Consensus        30 i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~  109 (434)
                      ...+.|++|.|+|++++++||+++|||+.......+.    .....+..++..+...-+..+                  
T Consensus       162 ~~~~~~~~l~v~D~~~a~~FY~~vlG~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~------------------  219 (282)
T 3oxh_A          162 TGTLIWNELLTDKPDLALAFYEAVVGLTHSSMEIAAG----QNYRVLKAGDAEVGGCMEPPM------------------  219 (282)
T ss_dssp             TTSEEEEEEECSCHHHHHHHHHHHHCCEEEEC-----------CEEEEETTEEEEEEECCSS------------------
T ss_pred             CCccEEEEEEcCCHHHHHHHHHHHhCCeeeeccCCCC----cceEEEEcCCccEeeecCCCC------------------
Confidence            4679999999999999999999999999775420111    123444555533321111000                  


Q ss_pred             ChhHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEeec
Q 013898          110 DHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSY  178 (434)
Q Consensus       110 ~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd~  178 (434)
                                ....+-.+++|.|+|+++++++++++|++++.+|........++.++++.|..+.++++
T Consensus       220 ----------~~~~~~~~~~~~v~dvd~~~~~~~~~G~~~~~~p~~~~~~~~~~~~~DPdGn~~~l~~~  278 (282)
T 3oxh_A          220 ----------PGVPNHWHVYFAVDDADATAAKAAAAGGQVIAEPADIPSVGRFAVLSDPQGAIFSVLKA  278 (282)
T ss_dssp             ----------TTCCSEEEEEEECSCHHHHHHHHHHTTCEEEEEEEEETTTEEEEEEECTTSCEEEEEEE
T ss_pred             ----------CCCCCeEEEEEEeCCHHHHHHHHHHcCCEEecCCeEcCCCeEEEEEECCCCCEEEEEec
Confidence                      01123457999999999999999999999877775543323455566666666666653

>3fcd_A Lyase, ORF125EGC139; lactoylglutathione lyase, YECM, PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.92A {Uncultured bacterium} SCOP: d.32.1.0

Probab=98.47  E-value=1.7e-06  Score=73.31  Aligned_cols=120  Identities=13%  Similarity=0.063  Sum_probs=73.9

Q ss_pred             eeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcCCCC
Q 013898          211 HAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAG  290 (434)
Q Consensus       211 Hv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G~G  290 (434)
                      +..+.|+|++++++||+++|||+......  .         ...+..  +...|.|.+...   ...     ..  .+.+
T Consensus        10 ~~~l~v~D~~~a~~FY~~~LG~~~~~~~~--~---------~~~l~~--~~~~l~l~~~~~---~~~-----~~--~~~~   66 (134)
T 3fcd_A           10 TPFLHIPDMQEALTLFCDTLGFELKYRHS--N---------YAYLEL--SGCGLRLLEEPA---RKI-----IP--DGIA   66 (134)
T ss_dssp             EEEEEESCHHHHHHHHTTTTCCEEEEEET--T---------EEEEEE--TTEEEEEEECCC---C---------------
T ss_pred             eeEEEECCHHHHHHHHHhccCcEEEEeCC--C---------eEEEEE--CCEEEEEEeCCC---CCc-----CC--CCCc
Confidence            56788999999999999999999876531  1         122333  345677765431   110     00  1223


Q ss_pred             ceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEEEEcccc
Q 013898          291 VQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFTKPV  370 (434)
Q Consensus       291 vqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llqifT~~~  370 (434)
                      -.|++|.|+|++++.++|++++...|.+++. +|...        +           .....++-+|++|+++++.+.+-
T Consensus        67 ~~~l~~~v~dv~~~~~~l~~~g~~~g~~i~~-~~~~~--------~-----------~g~~~~~~~DPdG~~iel~~~~~  126 (134)
T 3fcd_A           67 RVAICIDVSDIDSLHTKLSPALENLPADQVE-PLKNM--------P-----------YGQREFQVRMPDGDWLNFTAPLA  126 (134)
T ss_dssp             -EEEEEECSCHHHHHHHHHHHHTTSCGGGEE-EEEEC--------T-----------TSEEEEEEECTTSCEEEEEEECC
T ss_pred             eEEEEEEeCCHHHHHHHHHhcCCccCCcccc-CCccc--------C-----------CCcEEEEEECCCCCEEEEEEccc
Confidence            4799999999999999999872222444443 22210        0           01124566888999999888776


Q ss_pred             CCC
Q 013898          371 GDR  373 (434)
Q Consensus       371 ~~r  373 (434)
                      .+.
T Consensus       127 ~~~  129 (134)
T 3fcd_A          127 EGH  129 (134)
T ss_dssp             TTS
T ss_pred             ccc
Confidence            543

>1mpy_A Catechol 2,3-dioxygenase; extradiol dioxygenase, non heme iron dioxygenase, metapyrocatechase, oxidoreductase; 2.80A {Pseudomonas putida} SCOP: d.32.1.3 d.32.1.3

Probab=98.46  E-value=1.1e-06  Score=85.12  Aligned_cols=116  Identities=12%  Similarity=0.036  Sum_probs=73.0

Q ss_pred             CCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCC--EEEEEEcCCCCCCCcccccCCCCCC
Q 013898           28 FRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGD--LRFVFTAPYSPSISDAADAGNSSAS  105 (434)
Q Consensus        28 ~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~--i~~vl~~p~~~~~~~~~~~~~~~~~  105 (434)
                      +.+.+++||.|.|+|++++++||+++|||++........+. . ....++.++  ..+.+..                  
T Consensus       146 ~~~~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~-~-~~~~l~~~~~~~~~~~~~------------------  205 (307)
T 1mpy_A          146 MAAVRFDHALMYGDELPATYDLFTKVLGFYLAEQVLDENGT-R-VAQFLSLSTKAHDVAFIH------------------  205 (307)
T ss_dssp             TCCCEEEEEEEEESCHHHHHHHHHHTTCCEEEEEEECTTCC-E-EEEEEESSSBSCSEEEEE------------------
T ss_pred             CCcCceeeEEEEcCCHHHHHHHHHHHcCCeeEeeeecCCCc-E-EEEEEEcCCCceeEEEec------------------
Confidence            56899999999999999999999999999987653211110 1 111222211  1111111                  


Q ss_pred             CCCCChhHHhHHHHhcCCc-eeEEEEEec---CHHHHHHHHHHcCCCCCCCCcccc-CceEEEEEEecCCeEEEEee
Q 013898          106 LPTFDHAACRSFAASHGLA-ARSIAVEVE---DADVAFNTSVAHGAKPSSPPVILD-NLAVIAEVQLYGDVVLRYVS  177 (434)
Q Consensus       106 ~~~~~~~~~~~~l~~hG~g-v~~Iaf~V~---Dvd~a~~ra~~~Ga~~~~~p~~~~-~~~~~~~i~~~Gg~~~~fvd  177 (434)
                                    ..+.| +.|++|.|+   |+++++++++++|+++..+|.... +......++.+.|..+++..
T Consensus       206 --------------~~~~g~~~hi~f~v~d~~dv~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~  268 (307)
T 1mpy_A          206 --------------HPEKGRLHHVSFHLETWEDLLRAADLISMTDTSIDIGPTRHGLTHGKTIYFFDPSGNRNEVFC  268 (307)
T ss_dssp             --------------CSSSSEEEEEEEECSCHHHHHHHHHHHHHHTCCEEEEEEECSSTTCEEEEEECTTSCEEEEEE
T ss_pred             --------------CCCCCcceEEEEEcCCHHHHHHHHHHHHHCCCceeeCCccCCCCCceEEEEECCCCcEEEEEe
Confidence                          11234 789999999   577888999999998765554321 11223345566666666655

>3bt3_A Glyoxalase-related enzyme, ARAC type; VOC superfamily, PSI-2, NYSGXRC, structural genomics, prote structure initiative; 2.50A {Clostridium phytofermentans}

Probab=98.46  E-value=1.1e-06  Score=75.86  Aligned_cols=123  Identities=11%  Similarity=0.106  Sum_probs=74.0

Q ss_pred             ceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHh
Q 013898          205 GIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLE  284 (434)
Q Consensus       205 ~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~  284 (434)
                      .+.+++|+.+.|+|++++++||+++|||+..+.... +..     . .+ +    + ..|.|....    ..........
T Consensus        18 ~~~~~~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~-~~~-----~-~~-~----g-~~l~l~~~~----~~~~~~~~~~   80 (148)
T 3bt3_A           18 YVVRENGPVYFTKDMDKTVKWFEEILGWSGDIVARD-DEG-----F-GD-Y----G-CVFDYPSEV----AVAHLTPFRG   80 (148)
T ss_dssp             CEEEECCCEEEESCHHHHHHHHHHTTCCEEEEEEEC-TTS-----C-EE-E----E-EEESSCTTT----TSCC--CCCS
T ss_pred             ceEEeeeEEEEECCHHHHHHHHHhccCCEEEeeeec-CCC-----c-cE-E----c-cEEEEeccC----CCcccccccc
Confidence            478999999999999999999999999998642211 111     1 11 2    1 225551111    0000000000


Q ss_pred             hc---CCCCceEEEE-EeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCc
Q 013898          285 HN---EGAGVQHLAL-VSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQG  360 (434)
Q Consensus       285 ~~---~G~GvqHIAf-~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g  360 (434)
                      .+   +.++..|.+| .|+||++++++|+++    |++++.. |...        +           .....++-+|++|
T Consensus        81 ~~~~~g~~~~~~~~~~~v~dvd~~~~~l~~~----G~~~~~~-~~~~--------~-----------~g~~~~~~~DPdG  136 (148)
T 3bt3_A           81 FHLFKGEPIKGVAGFMMIEGIDALHKYVKEN----GWDQISD-IYTQ--------P-----------WGARECSITTTDG  136 (148)
T ss_dssp             EEEEESCCCSSEEEEEEEECHHHHHHHHHHT----TCCCBCC-CEEE--------T-----------TTEEEEEEECTTS
T ss_pred             cceeeccCCCccEEEEEcCCHHHHHHHHHHc----CCccccC-cccC--------C-----------CccEEEEEECCCC
Confidence            00   1122334466 999999999999999    9998864 3321        0           0112457788899


Q ss_pred             eEEEEEcc
Q 013898          361 TLLQIFTK  368 (434)
Q Consensus       361 ~llqifT~  368 (434)
                      +++++++.
T Consensus       137 ~~iel~~~  144 (148)
T 3bt3_A          137 CILRFFES  144 (148)
T ss_dssp             CEEEEEEE
T ss_pred             CEEEEeee
Confidence            99888763

>4gym_A Glyoxalase/bleomycin resistance protein/dioxygena; PSI-biology, midwest center for structural genomics, MCSG, oxidoreductase; HET: MSE; 1.56A {Conexibacter woesei}

Probab=98.46  E-value=1.4e-06  Score=75.19  Aligned_cols=123  Identities=13%  Similarity=0.103  Sum_probs=70.0

Q ss_pred             CcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCC
Q 013898           29 RVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPT  108 (434)
Q Consensus        29 ~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~  108 (434)
                      ...++.||.|.|+|++++++||++ +||.......  ..   ........++..+.+........         ....  
T Consensus         6 ~~~rl~~V~L~V~Dl~~s~~FY~~-lg~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~---------~~~~--   68 (149)
T 4gym_A            6 SQSRLTFVNLPVADVAASQAFFGT-LGFEFNPKFT--DE---SCACMVVSEQAFVMLIDRARFAD---------FTSK--   68 (149)
T ss_dssp             -CCCCEEEEEEESCHHHHHHHHHH-TTCEECGGGC--BT---TEEEEEEETTEEEEEEEHHHHGG---------GCSS--
T ss_pred             CCccEEEEEEEeCCHHHHHHHHHH-hCCCcceeec--CC---ceeEEeecCcceEeeeccccccc---------cccc--
Confidence            357889999999999999999986 6666543321  11   12333344555544432110000         0000  


Q ss_pred             CChhHHhHHHHhcCCceeEEEEEec---CHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEe
Q 013898          109 FDHAACRSFAASHGLAARSIAVEVE---DADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYV  176 (434)
Q Consensus       109 ~~~~~~~~~l~~hG~gv~~Iaf~V~---Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fv  176 (434)
                             .....++.+..|+||.|+   |++++++++++.|++++.+|... +......+++++|..++++
T Consensus        69 -------~~~~~~~~~~~~~a~~v~~~~~vd~~~~~~~~~g~~~~~~p~~~-~~~~~~~f~DPDGn~iEi~  131 (149)
T 4gym_A           69 -------PIADATATTEAIVCVSAIDRDDVDRFADTALGAGGTVARDPMDY-GFMYGRSFHDLDGHLWEVM  131 (149)
T ss_dssp             -------CBCCTTTCBSCEEEEECSSHHHHHHHHHHHHHTTCEECSCCEEC-SSEEEEEEECTTCCEEEEE
T ss_pred             -------cCCCCCCCCeeEEEEEeccHHHHHHHHHHHHhcCceeecccccc-CCEEEEEEEcCCCCEEEEE
Confidence                   000112334458999996   57899999999999988887654 2222233444444444444

>1xrk_A Bleomycin resistance protein; arm exchange, ligand binding protein, thermostable mutant, antibiotic inhibitor; HET: BLM; 1.50A {Streptoalloteichus hindustanus} SCOP: d.32.1.2 PDB: 2zhp_A* 1byl_A

Probab=98.43  E-value=2.4e-06  Score=71.31  Aligned_cols=113  Identities=12%  Similarity=-0.011  Sum_probs=73.4

Q ss_pred             eeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcC
Q 013898          208 RLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNE  287 (434)
Q Consensus       208 ~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~  287 (434)
                      ...|+.+.|+|++++++||+++|||+..+..    ..     .  ..+..  +...|.|.....    .          .
T Consensus         5 ~~~~~~l~v~D~~~a~~FY~~~lG~~~~~~~----~~-----~--~~~~~--~~~~l~l~~~~~----~----------~   57 (124)
T 1xrk_A            5 TSAVPVLTARDVAEAVEFWTDRLGFSRVFVE----DD-----F--AGVVR--DDVTLFISAVQD----Q----------V   57 (124)
T ss_dssp             EEEEEEEEESCHHHHHHHHHHTTCCEEEEEC----SS-----E--EEEEE--TTEEEEEEECSC----T----------T
T ss_pred             cceeEEEEcCCHHHHHHHHHHccCceEEecC----CC-----E--EEEEE--CCEEEEEEcCCC----C----------C
Confidence            4579999999999999999999999987641    11     1  12232  345666654321    0          1


Q ss_pred             CCCceEEEEEeCCHHHHHHHHHHhcC-C-CCc--eeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEE
Q 013898          288 GAGVQHLALVSEDIFRTLREMRKRSG-V-GGF--EFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLL  363 (434)
Q Consensus       288 G~GvqHIAf~vdDI~~av~~L~~~~~-~-~Gv--~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~ll  363 (434)
                      ..+..|++|.|+|++++.++|+++.. + .|+  +++.. |...        +       +    . ..++-+|++|+++
T Consensus        58 ~~~~~~~~~~v~dv~~~~~~l~~~~~~~~~G~~~~~~~~-~~~~--------~-------~----g-~~~~~~DPdG~~i  116 (124)
T 1xrk_A           58 VPDNTQAWVWVRGLDELYAEWSEVVSTNFRDASGPAMTE-IVEQ--------P-------W----G-REFALRDPAGNCV  116 (124)
T ss_dssp             TGGGCEEEEEEECHHHHHHHHTTTSBSCTTTCSSCEECC-CEEE--------T-------T----E-EEEEEECTTCCEE
T ss_pred             CCCceEEEEEECCHHHHHHHHHHhcccccCCccccccCC-ceec--------C-------C----C-CEEEEECCCCCEE
Confidence            12357999999999999999987500 0 056  66643 2221        0       0    1 2456688899999


Q ss_pred             EEEcc
Q 013898          364 QIFTK  368 (434)
Q Consensus       364 qifT~  368 (434)
                      ++++.
T Consensus       117 el~~~  121 (124)
T 1xrk_A          117 HFVAE  121 (124)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            88764

>1f1u_A Homoprotocatechuate 2,3-dioxygenase; extradiol, manganese, biodegradation, aromatic, oxidoreductase; 1.50A {Arthrobacter globiformis} SCOP: d.32.1.3 d.32.1.3 PDB: 1f1r_A 1f1v_A* 1f1x_A

Probab=98.42  E-value=1.7e-06  Score=84.76  Aligned_cols=115  Identities=12%  Similarity=0.034  Sum_probs=74.9

Q ss_pred             CCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCC--EEEEEEcCCCCCCCcccccCCCCCC
Q 013898           28 FRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGD--LRFVFTAPYSPSISDAADAGNSSAS  105 (434)
Q Consensus        28 ~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~--i~~vl~~p~~~~~~~~~~~~~~~~~  105 (434)
                      ..+.+|+||.+.|+|.+++.+|| +.|||++......+.+  .....+++.++  ..+.+.                   
T Consensus       148 ~~~~~l~Hv~l~v~D~~~a~~FY-~~LGf~~~~~~~~~~g--~~~~~f~~~~~~~~~~~~~-------------------  205 (323)
T 1f1u_A          148 GELVRLDHFNQVTPDVPRGRAYL-EDLGFRVSEDIKDSDG--VTYAAWMHRKQTVHDTALT-------------------  205 (323)
T ss_dssp             TCCCEEEEEEEEESCHHHHHHHH-HHTTCEEEEEEECTTC--CEEEEEEESSSSSCSEEEE-------------------
T ss_pred             CCCceeeeEEEecCCHHHHHHHH-HhCCCeEEEEEEcCCC--cEEEEEEEcCCCcccEEEe-------------------
Confidence            46899999999999999999999 9999998765432222  11223333221  111111                   


Q ss_pred             CCCCChhHHhHHHHhcCCceeEEEEEecCHHH---HHHHHHHcCC--CCCCCCcc-ccCceEEEEEEecCCeEEEEee
Q 013898          106 LPTFDHAACRSFAASHGLAARSIAVEVEDADV---AFNTSVAHGA--KPSSPPVI-LDNLAVIAEVQLYGDVVLRYVS  177 (434)
Q Consensus       106 ~~~~~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~---a~~ra~~~Ga--~~~~~p~~-~~~~~~~~~i~~~Gg~~~~fvd  177 (434)
                                   ...+.++.|++|.|+|+++   ++++++++|+  ++...|.. ..+.....-++.++|..+++..
T Consensus       206 -------------~~~~~~~~Hiaf~v~d~d~v~~~~~~l~~~G~~~~i~~~p~~~~~~~~~~~y~~DPdG~~iE~~~  270 (323)
T 1f1u_A          206 -------------GGNGPRMHHVAFATHEKHNIIQICDKMGALRISDRIERGPGRHGVSNAFYLYILDPDGHRIEIYT  270 (323)
T ss_dssp             -------------ESSBSEEEEEEEECSSHHHHHHHHHHHHHTTCGGGEEEEEEECSTTCCEEEEEECTTCCEEEEEE
T ss_pred             -------------CCCCCCceEEEEECCCHHHHHHHHHHHHHCCCccccccCCCccCCCCcEEEEEECCCCCEEEEEe
Confidence                         1112478899999999988   9999999999  76544432 1122333445666666666654

>1zsw_A Metallo protein, glyoxalase family protein; hypothetical protein from glyoxalase family, structural GENO PSI, protein structure initiative; 1.65A {Bacillus cereus} SCOP: d.32.1.10 d.32.1.10

Probab=98.41  E-value=4.5e-06  Score=82.26  Aligned_cols=116  Identities=13%  Similarity=0.128  Sum_probs=78.5

Q ss_pred             CCCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEe--CCE--EEEEEcCCCCCCCcccccCCC
Q 013898           27 RFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRS--GDL--RFVFTAPYSPSISDAADAGNS  102 (434)
Q Consensus        27 ~~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~--G~i--~~vl~~p~~~~~~~~~~~~~~  102 (434)
                      .+.+.+++||.|.|+|++++++||+++|||++....+   +     ...+..  ++.  .+....+..+.          
T Consensus       175 ~~~~~~l~hv~l~v~Dl~~a~~FY~~~LG~~~~~~~~---~-----~~~~~~~~~g~~~~~~~~~~~~~~----------  236 (338)
T 1zsw_A          175 KHQIQGMGSVELTVRRLDKMASTLTEIFGYTEVSRND---Q-----EAIFQSIKGEAFGEIVVKYLDGPT----------  236 (338)
T ss_dssp             GGSCCEEEEEEEEESCHHHHHHHHHHTTCCEEEEECS---S-----EEEEESSTTCSTTCEEEEECCSSB----------
T ss_pred             cccCceEEEEEEEECCHHHHHHHHHHhcCCEEEeecC---C-----eEEEEecCCCCceEEEEeccCCCC----------
Confidence            3468999999999999999999999999999887642   1     233444  221  22222221000          


Q ss_pred             CCCCCCCChhHHhHHHHhcC-CceeEEEEEec---CHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEeec
Q 013898          103 SASLPTFDHAACRSFAASHG-LAARSIAVEVE---DADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSY  178 (434)
Q Consensus       103 ~~~~~~~~~~~~~~~l~~hG-~gv~~Iaf~V~---Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd~  178 (434)
                                      ...+ .++.|+||.|+   |+++++++++++|+++. +|... .......++.+.|..+.++..
T Consensus       237 ----------------~~~~~~~~~hiaf~v~~~~dv~~~~~~l~~~G~~~~-~~~~~-~~~~~~~~~DPdG~~iEl~~~  298 (338)
T 1zsw_A          237 ----------------EKPGRGSIHHLAIRVKNDAELAYWEEQVKQRGFHSS-GIIDR-FYFKSLYFRESNGILFEIATD  298 (338)
T ss_dssp             ----------------CBCCBTCEEEEEEEESSHHHHHHHHHHHHHTTCCCC-CCEEC-SSEEEEEEECTTCCEEEEEEE
T ss_pred             ----------------CCCCCCceEEEEEEeCCHHHHHHHHHHHHHCCCcee-eeeec-CceEEEEEECCCCCEEEEEEc
Confidence                            0122 36789999999   69999999999999873 55432 233445567777777777763

>2qnt_A AGR_C_3434P, uncharacterized protein ATU1872; glyoxalase/bleomycin resistance protein/dioxygenase family R protein, PSI-2, MCSG; HET: MSE EPE; 1.40A {Agrobacterium tumefaciens str}

Probab=98.39  E-value=2.3e-07  Score=78.90  Aligned_cols=118  Identities=10%  Similarity=0.089  Sum_probs=71.9

Q ss_pred             eeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEe-----cccCCCCCCCchHH
Q 013898          206 IRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPM-----NEPVFGTKRKSQIQ  280 (434)
Q Consensus       206 l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L-----~e~~~g~~~~s~i~  280 (434)
                      +++++|+.+.|+|++++++||+++|||+......  +         ...+.  .+ ..+..     ...... ...    
T Consensus         6 ~~~l~~v~l~v~D~~~a~~FY~~~LG~~~~~~~~--~---------~~~~~--~g-~~l~~~~~~~~~~~~~-~~~----   66 (141)
T 2qnt_A            6 GMRFVNPIPFVRDINRSKSFYRDRLGLKILEDFG--S---------FVLFE--TG-FAIHEGRSLEETIWRT-SSD----   66 (141)
T ss_dssp             SCCCCCCCCEESCHHHHHHHHHHTTCCCEEEECS--S---------EEEET--TS-CEEEEHHHHHHHHHSC-CC-----
T ss_pred             ccccceEEEEECCHHHHHHHHHHhcCCEEEEEcC--C---------cEEEe--cc-ceeccCchhhhhcccc-CCc----
Confidence            4689999999999999999999999999875421  0         11121  12 23321     010000 000    


Q ss_pred             HHHhhcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCc
Q 013898          281 TYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQG  360 (434)
Q Consensus       281 ~fl~~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g  360 (434)
                        .....+.+..|++|.|+|+++++++|++     |++++.. |...        +           .....++-+|++|
T Consensus        67 --~~~~~~~~~~~~~~~v~dv~~~~~~l~~-----G~~~~~~-~~~~--------~-----------~g~~~~~~~DPdG  119 (141)
T 2qnt_A           67 --AQEAYGRRNMLLYFEHADVDAAFQDIAP-----HVELIHP-LERQ--------A-----------WGQRVFRFYDPDG  119 (141)
T ss_dssp             ---CCCSCCSSCEEEEEESCHHHHHC-CGG-----GSCEEEE-EEEC--------T-----------TSCEEEEEECTTC
T ss_pred             --cccccCCCceEEEEEeCcHHHHHHHHHc-----CCccccC-CccC--------C-----------CCCEEEEEECCCC
Confidence              0011346799999999999998888776     5676643 2221        0           0123456788889


Q ss_pred             eEEEEEccc
Q 013898          361 TLLQIFTKP  369 (434)
Q Consensus       361 ~llqifT~~  369 (434)
                      +++++++..
T Consensus       120 ~~iel~~~~  128 (141)
T 2qnt_A          120 HAIEVGESL  128 (141)
T ss_dssp             CEEEEEECC
T ss_pred             CEEEEEecc
Confidence            988888653

>3pkv_A Toxoflavin lyase (TFLA); metalloenzyme, vicinal oxygen chelate superfamily; 1.34A {Paenibacillus polymyxa} PDB: 3pkw_A 3pkx_A* 3oul_A 3oum_A*

Probab=98.38  E-value=8.9e-07  Score=84.40  Aligned_cols=117  Identities=9%  Similarity=0.116  Sum_probs=76.5

Q ss_pred             ceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHh
Q 013898          205 GIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLE  284 (434)
Q Consensus       205 ~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~  284 (434)
                      .+.+|+||++.|+|++++.+||+++|||++.....           ....+..+  ...|.|.....             
T Consensus        23 ~~~~l~hV~L~V~Dle~s~~FY~~vLGl~~~~~~~-----------~~~~L~~g--~~~l~l~~~~~-------------   76 (252)
T 3pkv_A           23 HMTSIKQLTLYTAELDRMLAFYTNMLGAQHVHEQA-----------DAFTIQLG--VSQIQFRAAAD-------------   76 (252)
T ss_dssp             --CCEEEEEEEESCHHHHHHHHHHHHCGGGEEECS-----------SEEEEEET--TEEEEEEECCT-------------
T ss_pred             cCceEEEEEEEeCCHHHHHHHHHHhcCCEEEEccC-----------CEEEEEeC--CEEEEEEECCC-------------
Confidence            47899999999999999999999999999875421           11333333  34566654321             


Q ss_pred             hcCCCCceEEEEEeC--CHHHHHHHHHHhcCCCCceeccCCCch--hhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCc
Q 013898          285 HNEGAGVQHLALVSE--DIFRTLREMRKRSGVGGFEFMPSPPPT--YYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQG  360 (434)
Q Consensus       285 ~~~G~GvqHIAf~vd--DI~~av~~L~~~~~~~Gv~fl~~pP~~--YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g  360 (434)
                        .+.|+.|+||.++  |++++.++|+++     +++...+|..  |.    .+.             ....+|-+|++|
T Consensus        77 --~~~~~~hiaf~V~~~dld~~~~rL~~~-----v~~~~~~~~~~~~~----~~~-------------g~~~~~f~DPdG  132 (252)
T 3pkv_A           77 --GTKPFYHIAINIAANHFQEGKAWLSGF-----GELLTENDEDQAYF----PFF-------------NAYSCYVEDPSG  132 (252)
T ss_dssp             --TCCCCCEEEEEECTTCHHHHHHHHTTS-----SCCCCBTTBSCEEE----TTT-------------TEEEEEEECTTC
T ss_pred             --CCCCeeEEEEEecHHHHHHHHHHHHhc-----ceEeccCCcccccc----ccC-------------CeEEEEEECCCC
Confidence              2457999999885  577777777653     4544311111  10    011             224568899999


Q ss_pred             eEEEEEccccC
Q 013898          361 TLLQIFTKPVG  371 (434)
Q Consensus       361 ~llqifT~~~~  371 (434)
                      ..+++++.+-.
T Consensus       133 n~iEl~~~~~~  143 (252)
T 3pkv_A          133 NIIELISRQQA  143 (252)
T ss_dssp             CEEEEEEESSS
T ss_pred             CEEEEEEeCCC
Confidence            99999998743

>1xy7_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G48480, reductively methylated protein, CATH 3.10.180 fold; 1.80A {Arabidopsis thaliana} SCOP: d.32.1.9 PDB: 2q48_A

Probab=98.36  E-value=2.2e-06  Score=76.09  Aligned_cols=119  Identities=14%  Similarity=0.069  Sum_probs=74.7

Q ss_pred             EEEEEEEeCC--HHHHHHHHHHhcCCcEEEEecC-----CCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCC
Q 013898           33 FHHVEFWCTD--ATNTARRFSWGLGMPIVAKSDL-----STGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSAS  105 (434)
Q Consensus        33 l~HI~~~V~d--a~~a~~fy~~~lGf~~v~~~~~-----~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~  105 (434)
                      --++.|.|+|  ++++++||+++|||++......     +..........+..|+..|.+.......             
T Consensus        25 ~i~~~L~v~D~~~~~A~~FY~~vfG~~~~~~~~~~~~~~~~~~~~~~~a~l~~~g~~l~l~~~~~~~-------------   91 (166)
T 1xy7_A           25 EFKQMLLVEAQKVGDAVTFYKSAFGAIESGHSLYPKRKLDQELPHVLSSELNLAGSSFVVCDVSSLP-------------   91 (166)
T ss_dssp             EEEEEEEECTTCHHHHHHHHHHHHCCEEC---------------CCCEEEEEETTEEEEEEEGGGST-------------
T ss_pred             eEEEEEEECCcCHHHHHHHHHHHhCCEEEEEEccCCCCCCCCCCcEEEEEEEECCeEEEEeCCCccc-------------
Confidence            4578999999  9999999999999998754210     0000111223355677777665421000             


Q ss_pred             CCCCChhHHhHHHHhc--CCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccc--cCceEEEEEEecCCeEEEEee
Q 013898          106 LPTFDHAACRSFAASH--GLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVIL--DNLAVIAEVQLYGDVVLRYVS  177 (434)
Q Consensus       106 ~~~~~~~~~~~~l~~h--G~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~--~~~~~~~~i~~~Gg~~~~fvd  177 (434)
                                .+....  +.++ +|+|.|+|+++++++++++|++ +.+|...  .. ...+.++++.|..+.|.+
T Consensus        92 ----------~~~~~~~~~~g~-~l~~~vdDvda~~~~l~~~G~~-~~~~~~~~~~~-~r~~~v~DP~G~~~~l~~  154 (166)
T 1xy7_A           92 ----------GFSTAKSEGSGV-TFLLGTKDAEAAVAKAVDAGAV-KVEVTEAEVEL-GFKGKVTDPFGVTWIFAE  154 (166)
T ss_dssp             ----------TCCCCCTTSCCC-EEEEECSCHHHHHHHHHHTTCE-ECCCCHHHHHT-TEEEEEECTTSCEEEEEC
T ss_pred             ----------CCccccCCCCcE-EEEEEcCCHHHHHHHHHHCCCE-ECCcccccCcc-cEEEEEECCCCCEEEEEe
Confidence                      000011  3344 7999999999999999999999 8877543  23 445666666666666665

>1xy7_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G48480, reductively methylated protein, CATH 3.10.180 fold; 1.80A {Arabidopsis thaliana} SCOP: d.32.1.9 PDB: 2q48_A

Probab=98.18  E-value=1.7e-05  Score=70.28  Aligned_cols=125  Identities=14%  Similarity=0.008  Sum_probs=68.7

Q ss_pred             eeeeEecCC--HHHHHHHHHHhhCCeeeeeeeccc--CcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhh
Q 013898          210 DHAVGNVPE--LAPAVAYVKSFTGFHEFAEFTAED--VGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEH  285 (434)
Q Consensus       210 DHv~i~V~d--l~~~~~fY~~vLGf~~~~~~~~~d--~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~  285 (434)
                      -|..+.|+|  ++++++||+++|||+.........  +......+....+..++  ..|.+.....   ...    + ..
T Consensus        26 i~~~L~v~D~~~~~A~~FY~~vfG~~~~~~~~~~~~~~~~~~~~~~~a~l~~~g--~~l~l~~~~~---~~~----~-~~   95 (166)
T 1xy7_A           26 FKQMLLVEAQKVGDAVTFYKSAFGAIESGHSLYPKRKLDQELPHVLSSELNLAG--SSFVVCDVSS---LPG----F-ST   95 (166)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHCCEEC---------------CCCEEEEEETT--EEEEEEEGGG---STT----C-CC
T ss_pred             EEEEEEECCcCHHHHHHHHHHHhCCEEEEEEccCCCCCCCCCCcEEEEEEEECC--eEEEEeCCCc---ccC----C-cc
Confidence            378889999  999999999999999764321000  00000011111222222  2344433210   000    0 01


Q ss_pred             cC--CCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEE
Q 013898          286 NE--GAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLL  363 (434)
Q Consensus       286 ~~--G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~ll  363 (434)
                      ..  +.|+ ||+|.|+||++++++|+++    |++ +. ||... ..            .+     ....+-+|++|+++
T Consensus        96 ~~~~~~g~-~l~~~vdDvda~~~~l~~~----G~~-~~-~~~~~-~~------------~~-----~r~~~v~DP~G~~~  150 (166)
T 1xy7_A           96 AKSEGSGV-TFLLGTKDAEAAVAKAVDA----GAV-KV-EVTEA-EV------------EL-----GFKGKVTDPFGVTW  150 (166)
T ss_dssp             CCTTSCCC-EEEEECSCHHHHHHHHHHT----TCE-EC-CCCHH-HH------------HT-----TEEEEEECTTSCEE
T ss_pred             ccCCCCcE-EEEEEcCCHHHHHHHHHHC----CCE-EC-Ccccc-cC------------cc-----cEEEEEECCCCCEE
Confidence            11  3444 9999999999999999999    999 75 43331 00            01     01334577889999


Q ss_pred             EEEccc
Q 013898          364 QIFTKP  369 (434)
Q Consensus       364 qifT~~  369 (434)
                      +|++..
T Consensus       151 ~l~~~~  156 (166)
T 1xy7_A          151 IFAEKK  156 (166)
T ss_dssp             EEEC--
T ss_pred             EEEeec
Confidence            998753

>3p8a_A Uncharacterized protein; mainly antiparallel beta sheets, alpha and beta protein, UNK function; HET: MSE BTB PG4; 1.95A {Staphylococcus aureus}

Probab=98.14  E-value=0.00014  Score=69.97  Aligned_cols=184  Identities=8%  Similarity=0.068  Sum_probs=101.4

Q ss_pred             CcceEEEEEEEeCCHHHHHHHHHHhcC-----CcEEEEe-cCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCC-
Q 013898           29 RVNRFHHVEFWCTDATNTARRFSWGLG-----MPIVAKS-DLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGN-  101 (434)
Q Consensus        29 ~i~~l~HI~~~V~da~~a~~fy~~~lG-----f~~v~~~-~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~-  101 (434)
                      +..+||||.++|+++        +.||     |.+.... ...-|   +...++.-++..|+|.+...+...  +++.. 
T Consensus        21 M~~~lDHlVi~v~~l--------~~lG~~~~~f~~~~GG~H~~~G---T~N~Li~fdg~YLElIai~~~~~~--~~~~~~   87 (274)
T 3p8a_A           21 MILKFDHIIHYIDQL--------DRFSFPGDVIKLHSGGYHHKYG---TFNKLGYINENYIELLDVENNEKL--KKMAKT   87 (274)
T ss_dssp             CCCEEEEEEEECTTG--------GGCCCGGGSSCCEEEEEETTTT---EEEEEEECSSSEEEEEEESCHHHH--HHHTTS
T ss_pred             ccccCCEEEEEeccH--------HHcCCccceEEeCCCccCCCCC---CEEEEEeeCCEEEEEEeecCcccc--cccccc
Confidence            468899999999987        4678     8876532 11122   344455558899999887542100  00000 


Q ss_pred             CCCCCCCCChhHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeE--EEEeecc
Q 013898          102 SSASLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVV--LRYVSYK  179 (434)
Q Consensus       102 ~~~~~~~~~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~--~~fvd~~  179 (434)
                      ....+ .+.. .+.  ..+.|+|+.++||+|+|++++.+++.++|.... .|....-.       .++|..  ..+.-+.
T Consensus        88 ~~~~~-~f~~-~~~--~~~~geGl~~~alrt~Di~a~~a~l~~~Gl~~~-~p~~~sR~-------~pDG~~l~W~l~~~~  155 (274)
T 3p8a_A           88 IEGGV-AFAT-QIV--QEKYEQGFKNICLHTNDIEAVKNKLQSEQVEVV-GPIQMERD-------THKDGKVKWQLLYIM  155 (274)
T ss_dssp             TGGGT-CTTT-HHH--HTTTCCEEEEEEEECSCHHHHHHHHHTTTCEEE-EEEEEEEC-------CCC--CEEEEEEEEE
T ss_pred             cCccc-hHHH-Hhh--hhccCCCeEEEEEecCCHHHHHHHHHHcCCCcC-CCcccccc-------CCCCCEEEEEEEecc
Confidence            00000 0100 000  135678999999999999999999999998642 22111000       012211  1111111


Q ss_pred             CcC-CCC--CCCCCCccCCCC---CCCCcccceeeeeeeeEecCCHHHHHHHHHHhhCCeeeee
Q 013898          180 DKA-NHL--DFLPGFEPTDEI---SSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAE  237 (434)
Q Consensus       180 ~~~-~~g--~~~p~f~~~~~~---~~~~~~~~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~  237 (434)
                      ++. ..+  +|+.........   .....+.+..+|++|.+.++|.++++++|+++||......
T Consensus       156 d~~~~~~~~PFfiqw~~~~~~r~~~~~~HpnGa~gI~~vvi~~~dp~~~~~~~~~l~g~~~~~~  219 (274)
T 3p8a_A          156 NQDDDEIKPPFFIQWEESDSMRTKKLQKYFQKQFSIETVIVKSKNRSQTVSNWLKWFDMDIVEE  219 (274)
T ss_dssp             CSSCCSSCCCEEEEESSCTTHHHHHHTTTCCTTEEEEEEEEEETTHHHHHHHHHHHHCCEEEEE
T ss_pred             CCCccCCCccEEEecCCCccccccccccCCCccceEEEEEEEeCCHHHHHHHHHHHhCCCcccc
Confidence            111 110  111111100000   0012334678999999999999999999999999997643

>1qto_A Bleomycin-binding protein; arm-exchange, antibiotic inhibitor; 1.50A {Streptomyces verticillus} SCOP: d.32.1.2 PDB: 1jie_A* 1jif_A

Probab=98.11  E-value=1.1e-05  Score=67.05  Aligned_cols=110  Identities=11%  Similarity=0.016  Sum_probs=70.6

Q ss_pred             eeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcCCCC
Q 013898          211 HAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAG  290 (434)
Q Consensus       211 Hv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G~G  290 (434)
                      |+.+.|+|++++++||+++|||+.... .   ..     .  ..+..  +...|.|....     ...      .   .+
T Consensus         8 ~~~l~v~D~~~a~~FY~~~LG~~~~~~-~---~~-----~--~~~~~--~~~~l~l~~~~-----~~~------~---~~   60 (122)
T 1qto_A            8 VPVLTAVDVPANVSFWVDTLGFEKDFG-D---RD-----F--AGVRR--GDIRLHISRTE-----HQI------V---AD   60 (122)
T ss_dssp             CCEEEESSHHHHHHHHHHTTCCEEEEE-C---SS-----E--EEEEE--TTEEEEEEECS-----CHH------H---HT
T ss_pred             eEEEEcCCHHHHHHHHHhccCcEEeeC-C---CC-----E--EEEEE--CCEEEEEEcCC-----CCC------C---CC
Confidence            889999999999999999999998754 1   11     1  12232  34567765532     111      1   12


Q ss_pred             ceEEEEEeCCHHHHHHHHHHhcCC--CCc--eeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEEEE
Q 013898          291 VQHLALVSEDIFRTLREMRKRSGV--GGF--EFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIF  366 (434)
Q Consensus       291 vqHIAf~vdDI~~av~~L~~~~~~--~Gv--~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llqif  366 (434)
                      ..|++|.|+|+++++++|+++...  .|+  +++.. |...        +       +    . ..++-+|++|++++++
T Consensus        61 ~~~~~~~v~dvd~~~~~l~~~~~~~~~G~~~~~~~~-~~~~--------~-------~----g-~~~~~~DPdG~~iel~  119 (122)
T 1qto_A           61 NTSAWIEVTDPDALHEEWARAVSTDYADTSGPAMTP-VGES--------P-------A----G-REFAVRDPAGNCVHFT  119 (122)
T ss_dssp             TCEEEEEESCHHHHHHHHTTTSCSCTTCTTSCEECC-CEEE--------T-------T----E-EEEEEECTTSCEEEEE
T ss_pred             ceEEEEEECCHHHHHHHHHhhccccccCccccccCC-CcCC--------C-------C----C-cEEEEECCCCCEEEEe
Confidence            379999999999999999875100  166  66643 2220        0       0    1 2346678889988887


Q ss_pred             cc
Q 013898          367 TK  368 (434)
Q Consensus       367 T~  368 (434)
                      +.
T Consensus       120 ~~  121 (122)
T 1qto_A          120 AG  121 (122)
T ss_dssp             EC
T ss_pred             cC
Confidence            63

>2zw5_A Bleomycin acetyltransferase; dimer, two domains; HET: COA; 2.40A {Streptomyces verticillus} PDB: 2zw4_A* 2zw6_A 2zw7_A*

Probab=98.07  E-value=3.6e-05  Score=73.42  Aligned_cols=90  Identities=20%  Similarity=0.154  Sum_probs=59.8

Q ss_pred             eEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCC----EEEEEEcCCCCCCCcccccCCCCCCCC
Q 013898           32 RFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGD----LRFVFTAPYSPSISDAADAGNSSASLP  107 (434)
Q Consensus        32 ~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~----i~~vl~~p~~~~~~~~~~~~~~~~~~~  107 (434)
                      ..-++.+.|+|++++.+||+++|||+.......+ +    ....+..|+    ..+.+..+  +.               
T Consensus       183 ~~~~~~l~v~D~~~a~~FY~~~lG~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~--~~---------------  240 (301)
T 2zw5_A          183 LAVITELPVRDVAATLRLVEAALGARTAFAIGDP-P----EFAEAALTPWSAGPRFRLAAV--PG---------------  240 (301)
T ss_dssp             EEEEEEEEESCHHHHHHHHHHHSCCEEEEEEETT-E----EEEEEESSSSSSSSEEEEEEC--CC---------------
T ss_pred             ceeEEEEEeCCHHHHHHHHHHhcCCeEeeecCCC-c----cEEEEEcCCCccccccccccC--CC---------------
Confidence            3468899999999999999999999987543211 1    223445454    22222110  00               


Q ss_pred             CCChhHHhHHHHhcCCceeEEEEEec-CHHHHHHHHHHcCCCCCCCCcc
Q 013898          108 TFDHAACRSFAASHGLAARSIAVEVE-DADVAFNTSVAHGAKPSSPPVI  155 (434)
Q Consensus       108 ~~~~~~~~~~l~~hG~gv~~Iaf~V~-Dvd~a~~ra~~~Ga~~~~~p~~  155 (434)
                                  ..+.+..+++|.|+ |+++++++++++|++++.+|..
T Consensus       241 ------------~~~~~~~~~~~~v~~dvd~~~~~~~~~G~~~~~~~~~  277 (301)
T 2zw5_A          241 ------------PGPVEPVRLHLDAAGTADSLHRRAVDAGARVDGPPVR  277 (301)
T ss_dssp             ------------SSCCCCCEEEEEEESCHHHHHHHHHHTTCCEEEEEEE
T ss_pred             ------------cCCCCceEEEEEcCccHHHHHHHHHHcCCccccCccc
Confidence                        01112347899999 9999999999999987766644

>1u6l_A Hypothetical protein; structural genomics, PSI, protein STRU initiative, NEW YORK SGX research center for structural GEN nysgxrc; 2.81A {Pseudomonas aeruginosa} SCOP: d.32.1.7

Probab=98.07  E-value=9.3e-05  Score=64.19  Aligned_cols=116  Identities=13%  Similarity=-0.001  Sum_probs=69.9

Q ss_pred             EEEEEeC-CHHHHHHHHHHhcCCcEEEEecCCC---------C-ceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCC
Q 013898           35 HVEFWCT-DATNTARRFSWGLGMPIVAKSDLST---------G-NTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSS  103 (434)
Q Consensus        35 HI~~~V~-da~~a~~fy~~~lGf~~v~~~~~~~---------g-~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~  103 (434)
                      +..|.|. |+++|++||+++|||++........         . ........+..++..|.+........          
T Consensus         6 ~p~L~v~~d~~~A~~FY~~vfG~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~l~~~d~~~~~~----------   75 (149)
T 1u6l_A            6 VPYLIFNGNCREAFSCYHQHLGGTLEAMLPFGDSPECGDIPADWKDKIMHARLVVGSFALMASDNHPAYP----------   75 (149)
T ss_dssp             EEEEEESSCHHHHHHHHHHHHCSEEEEEEESTTTTC----CCSSCCCEEEEEEEETTEEEEEEECCTTSC----------
T ss_pred             EEEEEECCCHHHHHHHHHHHhCCEEEEEEEcccCCcccCCCcccCCcEEEEEEEECCEEEEEEcCCCccC----------
Confidence            3778888 9999999999999999876421111         0 01123345666887777654211000          


Q ss_pred             CCCCCCChhHHhHHHHhcCCceeEEEEEecC---HHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEee
Q 013898          104 ASLPTFDHAACRSFAASHGLAARSIAVEVED---ADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVS  177 (434)
Q Consensus       104 ~~~~~~~~~~~~~~l~~hG~gv~~Iaf~V~D---vd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd  177 (434)
                        .             ....| ..|+|.|+|   ++++++++. .|++++.+|....-..+.+.++++.|..+.+..
T Consensus        76 --~-------------~~~~g-~~l~~~v~d~~evd~~~~~l~-~Gg~i~~p~~~~~wG~r~~~v~Dp~G~~w~l~~  135 (149)
T 1u6l_A           76 --Y-------------EGIKG-CSISLNVDSKAEAERLFNALA-EGGSVQMPLGPTFWAASFGMFTDRFGVAWMVNC  135 (149)
T ss_dssp             --C-------------CCCCS-EEEEEECSSHHHHHHHHHHHH-TTSEEEEEEEEETTEEEEEEEECTTSCEEEEEE
T ss_pred             --C-------------CCCCc-eEEEEEcCCHHHHHHHHHHHH-CCCEEeecccccCcccceEEEECCCCCEEEEEE
Confidence              0             01234 379999999   789999975 788877766543212233444444444444443

>1u7i_A Hypothetical protein; structural genomics, PA1358, PSI, PROT structure initiative; HET: MSE; 1.40A {Pseudomonas aeruginosa} SCOP: d.32.1.7

Probab=98.07  E-value=8.9e-05  Score=63.11  Aligned_cols=109  Identities=14%  Similarity=0.050  Sum_probs=68.2

Q ss_pred             eEEEEEEEeC--CHHHHHHHHHHhc-CCcEEEEecCCCC----ceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCC
Q 013898           32 RFHHVEFWCT--DATNTARRFSWGL-GMPIVAKSDLSTG----NTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSA  104 (434)
Q Consensus        32 ~l~HI~~~V~--da~~a~~fy~~~l-Gf~~v~~~~~~~g----~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~  104 (434)
                      .+. +.|.|.  |+++|++||+++| |+++.........    ........+..++..+.+......     |       
T Consensus         6 ~i~-~~L~v~~~d~~~A~~FY~~~f~G~~~~~~~~~~~~~~~~~~~~~~a~~~~~g~~~~~~~~~~~-----~-------   72 (136)
T 1u7i_A            6 RVR-PFLMFQGVQAEAAMNFYLSLFDDAEILQIQRYGAEGPGPEGSVLKALFRLGDQSVHCIDSHVR-----H-------   72 (136)
T ss_dssp             EEE-EEEEEESSCHHHHHHHHHHHCSSEEEEEEEECCTTCSSCTTSEEEEEEEETTEEEEEEEESSC-----C-------
T ss_pred             cce-EEEEECCCCHHHHHHHHHHHcCCCEeeEEEEcccCCCCCCCcEEEEEEEECCEEEEEECCCCC-----C-------
Confidence            344 667887  9999999999999 9998753111110    011223445667776665432100     0       


Q ss_pred             CCCCCChhHHhHHHHhcCCceeEEEEEecC---HHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEeec
Q 013898          105 SLPTFDHAACRSFAASHGLAARSIAVEVED---ADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSY  178 (434)
Q Consensus       105 ~~~~~~~~~~~~~l~~hG~gv~~Iaf~V~D---vd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd~  178 (434)
                         .+          ..+.++ .+.|.|+|   +++++++|+ .|++++.+|...          +||+....+.|+
T Consensus        73 ---~~----------~~~~~~-~l~~~v~d~~evd~~~~~l~-~Gg~v~~p~~~~----------~~G~~~~~~~Dp  124 (136)
T 1u7i_A           73 ---AF----------DFTPAF-SFFVDCESNAQIERLAEALS-DGGKALMPLGDY----------GFSQRFAWLADR  124 (136)
T ss_dssp             ---SC----------CCCTTE-EEEEECCCHHHHHHHHHHHH-TTSEEEEEEECC----------SSSSEEEEEECT
T ss_pred             ---CC----------CCCCce-EEEEEcCCHHHHHHHHHHHH-cCCEEecccccC----------CCcceEEEEECC
Confidence               00          012343 68999999   999999999 999987776554          355555555553

>3l20_A Putative uncharacterized protein; hypothetical protein, unknown function; 2.45A {Staphylococcus aureus}

Probab=97.91  E-value=0.0002  Score=64.10  Aligned_cols=107  Identities=6%  Similarity=0.079  Sum_probs=69.6

Q ss_pred             EEEEEeCCHHHHHHHHHHhcCCcEEEEecCCC---C---------ceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCC
Q 013898           35 HVEFWCTDATNTARRFSWGLGMPIVAKSDLST---G---------NTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNS  102 (434)
Q Consensus        35 HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~---g---------~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~  102 (434)
                      .-.|++.|+++|++||+++||++++......+   .         ........++.|+..|++.......          
T Consensus        28 ~PyL~f~~a~eAi~FY~~vFG~~~~~~~~~~d~p~~~~~~~~~~~~g~v~hael~i~g~~lm~~D~~g~~----------   97 (172)
T 3l20_A           28 FPYIAFENSKEALAYYEEVFGATDVKRLEVGEEQASHFGMTKEEAQEATMHAEFEVLGVKVLCSDSFGRA----------   97 (172)
T ss_dssp             EEEEEESCHHHHHHHHHHHSCCEEEEEEECCTTTTTTTTCCHHHHHTCEEEEEEEETTEEEEEEECTTCC----------
T ss_pred             EEEEEECCHHHHHHHHHHHcCCEEEEEEEcccCCcccccCCcccCCCcEEEEEEEECCEEEEEECCCCCC----------
Confidence            45677779999999999999999775432100   0         1123445667788888887632100          


Q ss_pred             CCCCCCCChhHHhHHHHhcCCceeEEEEEe--------cCHHHHHHHHHHcC-CCCCCCCccccCceEEEEEEecCCeEE
Q 013898          103 SASLPTFDHAACRSFAASHGLAARSIAVEV--------EDADVAFNTSVAHG-AKPSSPPVILDNLAVIAEVQLYGDVVL  173 (434)
Q Consensus       103 ~~~~~~~~~~~~~~~l~~hG~gv~~Iaf~V--------~Dvd~a~~ra~~~G-a~~~~~p~~~~~~~~~~~i~~~Gg~~~  173 (434)
                         .             ..+.++ .+.+.|        +|+++++++|++.| ++++.+|...          .||....
T Consensus        98 ---~-------------~~~~~~-sl~l~~~~~d~~~~~dvd~~~~~l~~~G~a~v~~p~~~~----------~wG~r~g  150 (172)
T 3l20_A           98 ---D-------------KINNGI-SLLIDYDVNNKEDADKVEAFYEQIKDHSSIEIELPFADQ----------FWGGKMG  150 (172)
T ss_dssp             ---C-------------CCCSSE-EEEEEEETTCHHHHHHHHHHHHHHTTCTTCEEEEEEEEC----------TTSSEEE
T ss_pred             ---C-------------CCCCcE-EEEEEEccCccCcHHHHHHHHHHHHhCCCceEecCcccc----------CCCcEEE
Confidence               0             112233 466666        68999999999999 7877766543          4666666


Q ss_pred             EEeec
Q 013898          174 RYVSY  178 (434)
Q Consensus       174 ~fvd~  178 (434)
                      .+.|+
T Consensus       151 ~v~Dp  155 (172)
T 3l20_A          151 VFTDK  155 (172)
T ss_dssp             EEECT
T ss_pred             EEECC
Confidence            66664

>1tsj_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, nysgxrc; 2.60A {Staphylococcus aureus subsp} SCOP: d.32.1.7

Probab=97.86  E-value=0.00021  Score=61.54  Aligned_cols=108  Identities=10%  Similarity=0.066  Sum_probs=68.8

Q ss_pred             cceEEEEEEEeCCHHHHHHHHHHhc-CCcEEEEecCCCC----ceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCC
Q 013898           30 VNRFHHVEFWCTDATNTARRFSWGL-GMPIVAKSDLSTG----NTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSA  104 (434)
Q Consensus        30 i~~l~HI~~~V~da~~a~~fy~~~l-Gf~~v~~~~~~~g----~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~  104 (434)
                      ++.+...-+++.|+++|++||+++| |+++.........    ........+..|+..+++.... +             
T Consensus         3 ~~~i~p~l~~~~d~~eA~~FY~~~f~G~~~~~~~~~~~~~~~~~~~v~ha~l~~~~~~~m~~d~~-~-------------   68 (139)
T 1tsj_A            3 IPKITTFLMFNNQAEEAVKLYTSLFEDSEIITMAKYGENGPGDPGTVQHSIFTLNGQVFMAIDAN-S-------------   68 (139)
T ss_dssp             CCSEEEEEECSSCHHHHHHHHHHHSSSCEEEEEEECC-----CTTSEEEEEEEETTEEEEEEC-----------------
T ss_pred             CCceeEEEEECCCHHHHHHHHHHHcCCCEEEEEEecCcCCCCCCCcEEEEEEEECCEEEEEECCC-C-------------
Confidence            3456555566679999999999999 9998753211110    0123345567788877765421 0             


Q ss_pred             CCCCCChhHHhHHHHhcCCceeEEEEEecC---HHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEeec
Q 013898          105 SLPTFDHAACRSFAASHGLAARSIAVEVED---ADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSY  178 (434)
Q Consensus       105 ~~~~~~~~~~~~~l~~hG~gv~~Iaf~V~D---vd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd~  178 (434)
                                 .    ++.. ..|++.|+|   +++++++|. .|++++.+|...          .||+..-.+.|+
T Consensus        69 -----------~----~~~~-~sl~~~~~d~~evd~~~~~l~-~G~~v~~p~~~~----------~wG~~~g~v~Dp  118 (139)
T 1tsj_A           69 -----------G----TELP-ISLFVTVKDTIEMERLFNGLK-DEGAILMPKTNM----------PPYREFAWVQDK  118 (139)
T ss_dssp             -------------------C-CCEEEECSSHHHHHHHHHHHH-TTCEEEEEEEEE----------TTEEEEEEEECT
T ss_pred             -----------C----CCce-EEEEEECCCHHHHHHHHHHHh-CCCEEeeccccc----------CCCceEEEEECC
Confidence                       0    1112 478999987   788899998 699887766543          466666666664

>3oms_A PHNB protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, methyltransferase, GL family; 1.90A {Bacillus cereus} SCOP: d.32.1.0

Probab=97.71  E-value=0.00052  Score=59.06  Aligned_cols=105  Identities=12%  Similarity=0.060  Sum_probs=65.2

Q ss_pred             EEEeC-CHHHHHHHHHHhcC-CcEEEEecC----CCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCC
Q 013898           37 EFWCT-DATNTARRFSWGLG-MPIVAKSDL----STGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFD  110 (434)
Q Consensus        37 ~~~V~-da~~a~~fy~~~lG-f~~v~~~~~----~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~  110 (434)
                      .|++. |+++|++||+++|| .++......    +..........++.|+..|++.......            ..    
T Consensus        14 ~L~f~g~a~eA~~FY~~vFg~~~i~~~~~~~~~~~~~~g~v~ha~l~i~g~~lm~~d~~~~~------------~~----   77 (138)
T 3oms_A           14 FLMFEGKAEEAMNFYTSLFDQSEIVSISRYDENGPGKEGTVIHATFTLNGQEFMCIDSYVNH------------NF----   77 (138)
T ss_dssp             EEEESSCHHHHHHHHHTTSTTCCEEEEEECCTTCSSCTTSEEEEEEEETTEEEEEEECSSCC------------SC----
T ss_pred             EEEECCCHHHHHHHHHHHcCCceEEEEEecCCCCCCCCCcEEEEEEEECCEEEEEEcCCCCC------------CC----
Confidence            45566 89999999999999 465432111    1111123445567788888887532110            00    


Q ss_pred             hhHHhHHHHhcCCceeEEEEEecC---HHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEeec
Q 013898          111 HAACRSFAASHGLAARSIAVEVED---ADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSY  178 (434)
Q Consensus       111 ~~~~~~~l~~hG~gv~~Iaf~V~D---vd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd~  178 (434)
                               ..+.++ .|.+.|+|   +++++++|. .|++++.+|...          .||+..-.+.|+
T Consensus        78 ---------~~~~~~-~l~l~~~d~~evd~~~~~l~-~Gg~v~~p~~~~----------~wg~~~~~~~Dp  127 (138)
T 3oms_A           78 ---------TFTPAM-SLYVTCETEEEIDTVFHKLA-QDGAILMPLGSY----------PFSKKFGWLNDK  127 (138)
T ss_dssp             ---------CCCTTS-CEEEEESSHHHHHHHHHHHH-TTCEEEEEEEEE----------TTEEEEEEEECT
T ss_pred             ---------CCCCCE-EEEEEcCCHHHHHHHHHHHH-cCCeEecCcccc----------cCCcEEEEEECC
Confidence                     112233 68999999   999999995 588877666543          456555566654

>2zw5_A Bleomycin acetyltransferase; dimer, two domains; HET: COA; 2.40A {Streptomyces verticillus} PDB: 2zw4_A* 2zw6_A 2zw7_A*

Probab=97.56  E-value=0.00056  Score=65.00  Aligned_cols=113  Identities=13%  Similarity=-0.039  Sum_probs=70.5

Q ss_pred             eeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCC--ceEEEecccCCCCCCCchHHHHHhhc
Q 013898          209 LDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDE--MVLLPMNEPVFGTKRKSQIQTYLEHN  286 (434)
Q Consensus       209 iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g--~v~i~L~e~~~g~~~~s~i~~fl~~~  286 (434)
                      .-|+.+.|.|++++++||+++|||+......  +.+    ++.  .+..+..  ...+.+....     .         .
T Consensus       184 ~~~~~l~v~D~~~a~~FY~~~lG~~~~~~~~--~~~----~~~--~~~~~~~~~~~~~~~~~~~-----~---------~  241 (301)
T 2zw5_A          184 AVITELPVRDVAATLRLVEAALGARTAFAIG--DPP----EFA--EAALTPWSAGPRFRLAAVP-----G---------P  241 (301)
T ss_dssp             EEEEEEEESCHHHHHHHHHHHSCCEEEEEEE--TTE----EEE--EEESSSSSSSSEEEEEECC-----C---------S
T ss_pred             eeEEEEEeCCHHHHHHHHHHhcCCeEeeecC--CCc----cEE--EEEcCCCccccccccccCC-----C---------c
Confidence            3477888999999999999999999875432  110    011  2222210  0222221110     0         0


Q ss_pred             CCCCceEEEEEeC-CHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEEE
Q 013898          287 EGAGVQHLALVSE-DIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQI  365 (434)
Q Consensus       287 ~G~GvqHIAf~vd-DI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llqi  365 (434)
                      .+.+-.|++|.|+ ||++++++++++    |++++.. |....      .+             ....+-+|++|.++.+
T Consensus       242 ~~~~~~~~~~~v~~dvd~~~~~~~~~----G~~~~~~-~~~~~------~g-------------~~~~~~~DPdG~~~~~  297 (301)
T 2zw5_A          242 GPVEPVRLHLDAAGTADSLHRRAVDA----GARVDGP-PVRRP------WG-------------RSEFVITLPEGHELTV  297 (301)
T ss_dssp             SCCCCCEEEEEEESCHHHHHHHHHHT----TCCEEEE-EEECT------TS-------------CEEEEEECTTSCEEEE
T ss_pred             CCCCceEEEEEcCccHHHHHHHHHHc----CCccccC-cccCC------Cc-------------ceEEEEECCCCCEEEe
Confidence            1223568999999 999999999999    9998863 33210      01             1245678899999998


Q ss_pred             Ec
Q 013898          366 FT  367 (434)
Q Consensus       366 fT  367 (434)
                      ++
T Consensus       298 ~~  299 (301)
T 2zw5_A          298 SA  299 (301)
T ss_dssp             EE
T ss_pred             eC
Confidence            76

>3e0r_A C3-degrading proteinase (CPPA protein); MCSG, PSI, SAD, structural GE protein structure initiative; 2.30A {Streptococcus pneumoniae}

Probab=97.41  E-value=0.00079  Score=63.15  Aligned_cols=81  Identities=14%  Similarity=0.025  Sum_probs=52.2

Q ss_pred             EEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEe--CCEEEEEEcCCCCCCCcccccCCCCCCCCCCC
Q 013898           33 FHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRS--GDLRFVFTAPYSPSISDAADAGNSSASLPTFD  110 (434)
Q Consensus        33 l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~--G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~  110 (434)
                      +-++.+.|.|.+.+.+||+++|||++...++        +...+..  +...|+|-+.....                  
T Consensus        11 ~~~p~LrV~nr~~~~~FY~~vlG~kll~ee~--------~~a~lg~~~~~~~L~lEEsp~~~------------------   64 (244)
T 3e0r_A           11 RIIPTLKANNRKLNETFYIETLGMKALLEES--------AFLSLGDQTGLEKLVLEEAPSMR------------------   64 (244)
T ss_dssp             EEEEEEEESSHHHHHHHHTTTTCCEEEEECS--------SEEEEECTTCCEEEEEEECCTTT------------------
T ss_pred             EEeeEEEECCHHHHHHHHHhccCcEEeeccC--------cEEEeecCCCcceEEEEeCCCcc------------------
Confidence            5568899999999999999999999987754        1233333  33455555411100                  


Q ss_pred             hhHHhHHHHhcCCceeEE---EEEecCHHHHHHHHHHcCCC
Q 013898          111 HAACRSFAASHGLAARSI---AVEVEDADVAFNTSVAHGAK  148 (434)
Q Consensus       111 ~~~~~~~l~~hG~gv~~I---af~V~Dvd~a~~ra~~~Ga~  148 (434)
                              .++-.|..|+   ++.|++..+...-+.. +..
T Consensus        65 --------~~~~~Glkh~a~i~i~vp~~~el~~lL~~-~~~   96 (244)
T 3e0r_A           65 --------TRKVEGRKKLARLIVKVENPLEIEGILSK-TDS   96 (244)
T ss_dssp             --------CBCCCSSCSEEEEEEEESSHHHHHHHHTT-CSC
T ss_pred             --------cccccccceeeeEEEEcCCHHHHHHHHhc-ccc
Confidence                    0122466666   5999998887655444 443

>1u6l_A Hypothetical protein; structural genomics, PSI, protein STRU initiative, NEW YORK SGX research center for structural GEN nysgxrc; 2.81A {Pseudomonas aeruginosa} SCOP: d.32.1.7

Probab=97.39  E-value=0.0018  Score=55.85  Aligned_cols=119  Identities=12%  Similarity=-0.007  Sum_probs=65.9

Q ss_pred             eeeEecC-CHHHHHHHHHHhhCCeeeeeeecccCcc----cc---cCceEEEEEcCCCceEEEecccCCCCCCCchHHHH
Q 013898          211 HAVGNVP-ELAPAVAYVKSFTGFHEFAEFTAEDVGT----SE---SGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTY  282 (434)
Q Consensus       211 Hv~i~V~-dl~~~~~fY~~vLGf~~~~~~~~~d~~~----~~---~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~f  282 (434)
                      +..+.|. |++++++||+++||++........+...    ..   ..+....+..+  ...|.+.....   ...     
T Consensus         6 ~p~L~v~~d~~~A~~FY~~vfG~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~~~--~~~l~~~d~~~---~~~-----   75 (149)
T 1u6l_A            6 VPYLIFNGNCREAFSCYHQHLGGTLEAMLPFGDSPECGDIPADWKDKIMHARLVVG--SFALMASDNHP---AYP-----   75 (149)
T ss_dssp             EEEEEESSCHHHHHHHHHHHHCSEEEEEEESTTTTC----CCSSCCCEEEEEEEET--TEEEEEEECCT---TSC-----
T ss_pred             EEEEEECCCHHHHHHHHHHHhCCEEEEEEEcccCCcccCCCcccCCcEEEEEEEEC--CEEEEEEcCCC---ccC-----
Confidence            3667888 9999999999999999875432111000    00   01111122222  23444433210   000     


Q ss_pred             HhhcCCCCceEEEEEeCC---HHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCC
Q 013898          283 LEHNEGAGVQHLALVSED---IFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQ  359 (434)
Q Consensus       283 l~~~~G~GvqHIAf~vdD---I~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~  359 (434)
                        .....| .+++|.|+|   +++++++|+ .    |.+++. ||....  -..|.               .  +-+|++
T Consensus        76 --~~~~~g-~~l~~~v~d~~evd~~~~~l~-~----Gg~i~~-p~~~~~--wG~r~---------------~--~v~Dp~  127 (149)
T 1u6l_A           76 --YEGIKG-CSISLNVDSKAEAERLFNALA-E----GGSVQM-PLGPTF--WAASF---------------G--MFTDRF  127 (149)
T ss_dssp             --CCCCCS-EEEEEECSSHHHHHHHHHHHH-T----TSEEEE-EEEEET--TEEEE---------------E--EEECTT
T ss_pred             --CCCCCc-eEEEEEcCCHHHHHHHHHHHH-C----CCEEee-cccccC--cccce---------------E--EEECCC
Confidence              002344 499999999   889999985 6    778875 433311  11111               2  345677


Q ss_pred             ceEEEEEc
Q 013898          360 GTLLQIFT  367 (434)
Q Consensus       360 g~llqifT  367 (434)
                      |+.+||.+
T Consensus       128 G~~w~l~~  135 (149)
T 1u6l_A          128 GVAWMVNC  135 (149)
T ss_dssp             SCEEEEEE
T ss_pred             CCEEEEEE
Confidence            88888876

>3p8a_A Uncharacterized protein; mainly antiparallel beta sheets, alpha and beta protein, UNK function; HET: MSE BTB PG4; 1.95A {Staphylococcus aureus}

Probab=96.82  E-value=0.0045  Score=59.41  Aligned_cols=98  Identities=12%  Similarity=0.106  Sum_probs=60.9

Q ss_pred             ceeeeeeeeEecCCHHHHHHHHHHhhC-----CeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCC-----
Q 013898          205 GIRRLDHAVGNVPELAPAVAYVKSFTG-----FHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTK-----  274 (434)
Q Consensus       205 ~l~~iDHv~i~V~dl~~~~~fY~~vLG-----f~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~-----  274 (434)
                      ++.++||+++.|+++        +.||     |++..--.-..-+     -....+..  +...|+|........     
T Consensus        21 M~~~lDHlVi~v~~l--------~~lG~~~~~f~~~~GG~H~~~G-----T~N~Li~f--dg~YLElIai~~~~~~~~~~   85 (274)
T 3p8a_A           21 MILKFDHIIHYIDQL--------DRFSFPGDVIKLHSGGYHHKYG-----TFNKLGYI--NENYIELLDVENNEKLKKMA   85 (274)
T ss_dssp             CCCEEEEEEEECTTG--------GGCCCGGGSSCCEEEEEETTTT-----EEEEEEEC--SSSEEEEEEESCHHHHHHHT
T ss_pred             ccccCCEEEEEeccH--------HHcCCccceEEeCCCccCCCCC-----CEEEEEee--CCEEEEEEeecCcccccccc
Confidence            578899999999988        4678     8766432111112     22333333  345677665431000     


Q ss_pred             --CCc--hHHHHH-hhcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceecc
Q 013898          275 --RKS--QIQTYL-EHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMP  321 (434)
Q Consensus       275 --~~s--~i~~fl-~~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~  321 (434)
                        +..  ...+.+ ....|+|+.|+||+|+||.+..++|+++    |+.+..
T Consensus        86 ~~~~~~~~f~~~~~~~~~geGl~~~alrt~Di~a~~a~l~~~----Gl~~~~  133 (274)
T 3p8a_A           86 KTIEGGVAFATQIVQEKYEQGFKNICLHTNDIEAVKNKLQSE----QVEVVG  133 (274)
T ss_dssp             TSTGGGTCTTTHHHHTTTCCEEEEEEEECSCHHHHHHHHHTT----TCEEEE
T ss_pred             cccCccchHHHHhhhhccCCCeEEEEEecCCHHHHHHHHHHc----CCCcCC
Confidence              001  111111 1235899999999999999999999999    988764

>1u7i_A Hypothetical protein; structural genomics, PA1358, PSI, PROT structure initiative; HET: MSE; 1.40A {Pseudomonas aeruginosa} SCOP: d.32.1.7

Probab=96.77  E-value=0.011  Score=49.91  Aligned_cols=117  Identities=14%  Similarity=0.119  Sum_probs=65.2

Q ss_pred             eeEecC--CHHHHHHHHHHhh-CCeeeee--eecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhc
Q 013898          212 AVGNVP--ELAPAVAYVKSFT-GFHEFAE--FTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHN  286 (434)
Q Consensus       212 v~i~V~--dl~~~~~fY~~vL-Gf~~~~~--~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~  286 (434)
                      ..+.|.  |++++++||+++| |++....  +....+.. ...+....+... + ..+.+.....   .+.    +   .
T Consensus         9 ~~L~v~~~d~~~A~~FY~~~f~G~~~~~~~~~~~~~~~~-~~~~~~a~~~~~-g-~~~~~~~~~~---~~~----~---~   75 (136)
T 1u7i_A            9 PFLMFQGVQAEAAMNFYLSLFDDAEILQIQRYGAEGPGP-EGSVLKALFRLG-D-QSVHCIDSHV---RHA----F---D   75 (136)
T ss_dssp             EEEEEESSCHHHHHHHHHHHCSSEEEEEEEECCTTCSSC-TTSEEEEEEEET-T-EEEEEEEESS---CCS----C---C
T ss_pred             EEEEECCCCHHHHHHHHHHHcCCCEeeEEEEcccCCCCC-CCcEEEEEEEEC-C-EEEEEECCCC---CCC----C---C
Confidence            456776  9999999999999 9998642  22110000 001111112222 2 2333322210   010    0   0


Q ss_pred             CCCCceEEEEEeCC---HHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEE
Q 013898          287 EGAGVQHLALVSED---IFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLL  363 (434)
Q Consensus       287 ~G~GvqHIAf~vdD---I~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~ll  363 (434)
                      .+.| .++.|.|+|   +++++++|+ +    |.+++. ||..+.  -..               +..  +-+|+.|..+
T Consensus        76 ~~~~-~~l~~~v~d~~evd~~~~~l~-~----Gg~v~~-p~~~~~--~G~---------------~~~--~~~Dp~G~~w  129 (136)
T 1u7i_A           76 FTPA-FSFFVDCESNAQIERLAEALS-D----GGKALM-PLGDYG--FSQ---------------RFA--WLADRFGVSW  129 (136)
T ss_dssp             CCTT-EEEEEECCCHHHHHHHHHHHH-T----TSEEEE-EEECCS--SSS---------------EEE--EEECTTSCEE
T ss_pred             CCCc-eEEEEEcCCHHHHHHHHHHHH-c----CCEEec-ccccCC--Ccc---------------eEE--EEECCCCCEE
Confidence            1233 479999999   999999999 8    888885 434321  001               112  3466779999


Q ss_pred             EEEc
Q 013898          364 QIFT  367 (434)
Q Consensus       364 qifT  367 (434)
                      ||.+
T Consensus       130 ~l~~  133 (136)
T 1u7i_A          130 QLNL  133 (136)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9876

>1tsj_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, nysgxrc; 2.60A {Staphylococcus aureus subsp} SCOP: d.32.1.7

Probab=96.76  E-value=0.011  Score=50.61  Aligned_cols=123  Identities=11%  Similarity=0.056  Sum_probs=63.6

Q ss_pred             eeeeeeEecCCHHHHHHHHHHhh-CCeeeeeeecccCc-ccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhh
Q 013898          208 RLDHAVGNVPELAPAVAYVKSFT-GFHEFAEFTAEDVG-TSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEH  285 (434)
Q Consensus       208 ~iDHv~i~V~dl~~~~~fY~~vL-Gf~~~~~~~~~d~~-~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~  285 (434)
                      +|-..-+.+.|.+++++||+++| |++........+.. .....+....+...  ...+.+....     +.    +   
T Consensus         5 ~i~p~l~~~~d~~eA~~FY~~~f~G~~~~~~~~~~~~~~~~~~~v~ha~l~~~--~~~~m~~d~~-----~~----~---   70 (139)
T 1tsj_A            5 KITTFLMFNNQAEEAVKLYTSLFEDSEIITMAKYGENGPGDPGTVQHSIFTLN--GQVFMAIDAN-----SG----T---   70 (139)
T ss_dssp             SEEEEEECSSCHHHHHHHHHHHSSSCEEEEEEECC-----CTTSEEEEEEEET--TEEEEEEC-----------------
T ss_pred             ceeEEEEECCCHHHHHHHHHHHcCCCEEEEEEecCcCCCCCCCcEEEEEEEEC--CEEEEEECCC-----CC----C---
Confidence            34333344459999999999999 99976432111100 00001211122222  2222222211     00    0   


Q ss_pred             cCCCCceEEEEEeCC---HHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceE
Q 013898          286 NEGAGVQHLALVSED---IFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTL  362 (434)
Q Consensus       286 ~~G~GvqHIAf~vdD---I~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~l  362 (434)
                       ...  -.+++.|+|   +++..++|+ .    |.+++. ||..+.  -..|               .+.  -+|+.|.+
T Consensus        71 -~~~--~sl~~~~~d~~evd~~~~~l~-~----G~~v~~-p~~~~~--wG~~---------------~g~--v~Dp~G~~  122 (139)
T 1tsj_A           71 -ELP--ISLFVTVKDTIEMERLFNGLK-D----EGAILM-PKTNMP--PYRE---------------FAW--VQDKFGVS  122 (139)
T ss_dssp             ---C--CCEEEECSSHHHHHHHHHHHH-T----TCEEEE-EEEEET--TEEE---------------EEE--EECTTSCE
T ss_pred             -Cce--EEEEEECCCHHHHHHHHHHHh-C----CCEEee-cccccC--CCce---------------EEE--EECCCCCE
Confidence             111  478999988   778888887 5    888885 444421  1122               233  35667999


Q ss_pred             EEEEccccCC
Q 013898          363 LQIFTKPVGD  372 (434)
Q Consensus       363 lqifT~~~~~  372 (434)
                      .||.+.+...
T Consensus       123 W~i~~~~~~~  132 (139)
T 1tsj_A          123 FQLALPEEGG  132 (139)
T ss_dssp             EEEEECC---
T ss_pred             EEEeeccccc
Confidence            9999877543

>3lho_A Putative hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: PG4; 1.80A {Shewanella frigidimarina}

Probab=96.60  E-value=0.0014  Score=62.10  Aligned_cols=98  Identities=22%  Similarity=0.267  Sum_probs=60.7

Q ss_pred             CchHHHHHhhcCCCCceEEEEEe------CCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHh
Q 013898          276 KSQIQTYLEHNEGAGVQHLALVS------EDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEE  349 (434)
Q Consensus       276 ~s~i~~fl~~~~G~GvqHIAf~v------dDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~  349 (434)
                      .|....++..+ |..++|++.+|      .||+++.+.|+++    |+.+-+.                           
T Consensus       149 ese~aAWv~~~-G~~~NH~T~~v~~L~~~~dI~~v~~~l~~~----G~~~n~~---------------------------  196 (267)
T 3lho_A          149 ESEYAAWVAAL-GYRANHFTVSINDLPEFERIEDVNQALKQA----GFVLNSS---------------------------  196 (267)
T ss_dssp             HCHHHHHHHHH-CBSCSEEEEETTTCTTCCCHHHHHHHHHHT----TCCBCCT---------------------------
T ss_pred             hChHHHHHhhc-CCccceeehhhcccCCCCCHHHHHHHHHHc----CCCcccC---------------------------
Confidence            34555566664 68899999999      9999999999999    9765431                           


Q ss_pred             cCeEEecCCCceEEEEEccccCC----------CCCeEEEEEEeeccccccccCcccccCCCCCcCCccHHHHHHH
Q 013898          350 LGVLVDRDDQGTLLQIFTKPVGD----------RPTIFIEIIQRVGCMLKDEEGKTYQKGGCGGFGKGNFSELFKS  415 (434)
Q Consensus       350 ~~iL~D~d~~g~llqifT~~~~~----------r~~~FfEiIqR~g~~~~~~~~~~~~~~~~~GFG~gN~~aLf~a  415 (434)
                       |--|-..+++.|.|.-|+..--          =|.=|+||+||.-    .++|+     .+.||=+||-..+|||
T Consensus       197 -Gg~Ikgsp~~lLrQtSt~A~~~~v~F~dg~~~ipg~fyEFa~R~~----~~~~~-----l~~gF~a~nAdkIFes  262 (267)
T 3lho_A          197 -GGEVKGSPEVLLEQSSTMADKVVVNFTDGDVEIPSCFYEFARRYP----MANGQ-----LYTGFVAASADKIFES  262 (267)
T ss_dssp             -TCSSEEEGGGTEEEEEBCCCEEEEEETTEEEEEECCCCEEEEECB----CTTSS-----BCCCSSCC--------
T ss_pred             -CCEEEECCCCcEEEEEccccceeEEecCCceecCceEEEEEEecc----CCccc-----cccccccccchhHHHh
Confidence             0001122346677776654431          2456999999983    23443     3589999999999997

>3iuz_A Putative glyoxalase superfamily protein; struct genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: MLY P6G PGE; 1.90A {Ralstonia eutropha}

Probab=96.31  E-value=0.0093  Score=58.43  Aligned_cols=106  Identities=18%  Similarity=0.200  Sum_probs=56.0

Q ss_pred             CchHHHHHhhcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceecc---CCCchhhHhHhhhcCCCCChhHHHHHHhcCe
Q 013898          276 KSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMP---SPPPTYYKNLKNRAGDVLTDEQIKQCEELGV  352 (434)
Q Consensus       276 ~s~i~~fl~~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~---~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~i  352 (434)
                      .|....++..+ |..++|+..+|.||++..+.|+++    |+++-.   .||+..                   ||+.-.
T Consensus       222 eS~~AAWva~~-G~~iNHlT~rv~DId~v~~~m~~~----G~~~k~~IeGsP~~l-------------------LrQTSf  277 (340)
T 3iuz_A          222 ESAEMAWIATE-GNAFNHATDRVDDVFGLSEQQXAL----GRPMXDXVEVSGSGR-------------------VXQTAF  277 (340)
T ss_dssp             HCHHHHHHHHH-TTSCSEEEEECSCHHHHHHHHHHT----TCCBCSCCEECTTSS-------------------EEEEEB
T ss_pred             hChHHhhhhhc-CCccccccCCcCCHHHHHHHHHHc----CCChhhhhcCCcccc-------------------eeeeec
Confidence            45666677664 778999999999999999999999    976543   222210                   111111


Q ss_pred             E-----Ee-cCCCceEEEEEccccCCCCCeEEEEEEeeccccccccCcccccCCCCCcCCccHHHHHHH
Q 013898          353 L-----VD-RDDQGTLLQIFTKPVGDRPTIFIEIIQRVGCMLKDEEGKTYQKGGCGGFGKGNFSELFKS  415 (434)
Q Consensus       353 L-----~D-~d~~g~llqifT~~~~~r~~~FfEiIqR~g~~~~~~~~~~~~~~~~~GFG~gN~~aLf~a  415 (434)
                      .     +- .|.+|...+   .++-   .=|.||+||-=.+  +++|...  ..+.||=+||-+.+||+
T Consensus       278 ~A~~e~v~F~d~~G~~v~---~~ip---~~F~EfaqR~~~~--~~~gr~~--~lydgF~~~nAd~IFes  336 (340)
T 3iuz_A          278 RADTVRRQFIGAQGETVE---RDVP---GSFYEFITRDRFA--DAPAASP--RVDLGFDAGNAQGIFXM  336 (340)
T ss_dssp             CCCEEEEEEECTTSCEEE---EEEE---CCEEEEEEECBC------------CBCCCCCCC--------
T ss_pred             cccceEEEEecCCCceee---eeee---eEEEEeeeccccc--Ccccchh--hhhhccccccccchhhh
Confidence            0     10 123333222   2222   3499999998432  2333221  23689999999999997

>3l20_A Putative uncharacterized protein; hypothetical protein, unknown function; 2.45A {Staphylococcus aureus}

Probab=96.29  E-value=0.029  Score=49.91  Aligned_cols=121  Identities=13%  Similarity=0.178  Sum_probs=67.9

Q ss_pred             eEecCCHHHHHHHHHHhhCCeeeeeeecccCccc--------ccC-ceEEEEEcCCCceEEEecccCCCCCCCchHHHHH
Q 013898          213 VGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTS--------ESG-LNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYL  283 (434)
Q Consensus       213 ~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~--------~~g-~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl  283 (434)
                      -+++.|.+++++||+++||++........+....        ..| +.-..+..  +...|.+.... +  ..       
T Consensus        30 yL~f~~a~eAi~FY~~vFG~~~~~~~~~~d~p~~~~~~~~~~~~g~v~hael~i--~g~~lm~~D~~-g--~~-------   97 (172)
T 3l20_A           30 YIAFENSKEALAYYEEVFGATDVKRLEVGEEQASHFGMTKEEAQEATMHAEFEV--LGVKVLCSDSF-G--RA-------   97 (172)
T ss_dssp             EEEESCHHHHHHHHHHHSCCEEEEEEECCTTTTTTTTCCHHHHHTCEEEEEEEE--TTEEEEEEECT-T--CC-------
T ss_pred             EEEECCHHHHHHHHHHHcCCEEEEEEEcccCCcccccCCcccCCCcEEEEEEEE--CCEEEEEECCC-C--CC-------
Confidence            3455599999999999999997654332110000        011 22222222  23445554421 1  00       


Q ss_pred             hhcCCCCceEEEEEe--------CCHHHHHHHHHHhcCCCC-ceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEE
Q 013898          284 EHNEGAGVQHLALVS--------EDIFRTLREMRKRSGVGG-FEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLV  354 (434)
Q Consensus       284 ~~~~G~GvqHIAf~v--------dDI~~av~~L~~~~~~~G-v~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~  354 (434)
                       ...+.|+ .+.+.+        +|+++..++|++.    | ++++. ||..+.  -..               +.+.+ 
T Consensus        98 -~~~~~~~-sl~l~~~~~d~~~~~dvd~~~~~l~~~----G~a~v~~-p~~~~~--wG~---------------r~g~v-  152 (172)
T 3l20_A           98 -DKINNGI-SLLIDYDVNNKEDADKVEAFYEQIKDH----SSIEIEL-PFADQF--WGG---------------KMGVF-  152 (172)
T ss_dssp             -CCCCSSE-EEEEEEETTCHHHHHHHHHHHHHHTTC----TTCEEEE-EEEECT--TSS---------------EEEEE-
T ss_pred             -CCCCCcE-EEEEEEccCccCcHHHHHHHHHHHHhC----CCceEec-CccccC--CCc---------------EEEEE-
Confidence             0123444 467777        5889999999988    8 78875 434321  011               22343 


Q ss_pred             ecCCCceEEEEEccccC
Q 013898          355 DRDDQGTLLQIFTKPVG  371 (434)
Q Consensus       355 D~d~~g~llqifT~~~~  371 (434)
                       +|+.|...||-+.|..
T Consensus       153 -~DpfG~~W~i~~~~~~  168 (172)
T 3l20_A          153 -TDKYGVRWMLHGQDYT  168 (172)
T ss_dssp             -ECTTSCEEEEEEECCS
T ss_pred             -ECCCCCEEEEEeCCCc
Confidence             5667999999888764

>1u69_A Hypothetical protein; structural genomics, MSCG, pseudomonas aeruginosa PAO1, HYPO protein, protein structure initiative (PSI); 1.60A {Pseudomonas aeruginosa} SCOP: d.32.1.7

Probab=95.87  E-value=0.086  Score=46.44  Aligned_cols=84  Identities=21%  Similarity=0.264  Sum_probs=56.2

Q ss_pred             EEEeC-CHHHHHHHHHHhc-CCcEEEEecC-------CCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCC
Q 013898           37 EFWCT-DATNTARRFSWGL-GMPIVAKSDL-------STGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLP  107 (434)
Q Consensus        37 ~~~V~-da~~a~~fy~~~l-Gf~~v~~~~~-------~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~  107 (434)
                      .|+++ |+++|++||+++| |.++......       +.+  .+-...++.|+..|++.... +.               
T Consensus        10 yL~f~g~a~eAi~FY~~vF~ga~i~~~~~~~~~~~~~~~g--~Vmhael~i~g~~~m~~d~~-p~---------------   71 (163)
T 1u69_A           10 CLWYDSAALEAATFYAETFPDSAVLAVHRAPGDYPSGKEG--DVLTVEFRVMGIPCLGLNGG-PA---------------   71 (163)
T ss_dssp             EEEESSCHHHHHHHHHHHSTTEEEEEEEECSSCBTTBCTT--SEEEEEEEETTEEEEEEECC-TT---------------
T ss_pred             EEEECCCHHHHHHHHHHHhCCCEEeEEEeccCCCCCCCCC--eEEEEEEEECCEEEEEECCC-CC---------------
Confidence            35566 9999999999999 9998753211       122  23445567788888876521 10               


Q ss_pred             CCChhHHhHHHHhcCCceeEEEEEecC---HHHHHHHHHHcCCCCC
Q 013898          108 TFDHAACRSFAASHGLAARSIAVEVED---ADVAFNTSVAHGAKPS  150 (434)
Q Consensus       108 ~~~~~~~~~~l~~hG~gv~~Iaf~V~D---vd~a~~ra~~~Ga~~~  150 (434)
                       +          ....++ .+.+.|+|   +++.+++|.+.|+++.
T Consensus        72 -~----------~~~~~~-sl~v~~~d~~e~d~~~~~L~~~Gg~v~  105 (163)
T 1u69_A           72 -F----------RHSEAF-SFQVATDDQAETDRLWNAIVDNGGEES  105 (163)
T ss_dssp             -C----------CCCTTE-EEEEEESSHHHHHHHHHHHHHTTCEEC
T ss_pred             -c----------CCCCce-EEEEEeCCHHHHHHHHHHHHhCCCEEE
Confidence             0          122344 68888987   7888999987888765

>3e0r_A C3-degrading proteinase (CPPA protein); MCSG, PSI, SAD, structural GE protein structure initiative; 2.30A {Streptococcus pneumoniae}

Probab=95.18  E-value=0.067  Score=50.08  Aligned_cols=78  Identities=10%  Similarity=0.114  Sum_probs=50.8

Q ss_pred             eeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcCCCC
Q 013898          211 HAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAG  290 (434)
Q Consensus       211 Hv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G~G  290 (434)
                      +.+++|.|++.+++||+++|||+...+..           ....+....+..+|.|.|...   ..+        +.-.|
T Consensus        13 ~p~LrV~nr~~~~~FY~~vlG~kll~ee~-----------~~a~lg~~~~~~~L~lEEsp~---~~~--------~~~~G   70 (244)
T 3e0r_A           13 IPTLKANNRKLNETFYIETLGMKALLEES-----------AFLSLGDQTGLEKLVLEEAPS---MRT--------RKVEG   70 (244)
T ss_dssp             EEEEEESSHHHHHHHHTTTTCCEEEEECS-----------SEEEEECTTCCEEEEEEECCT---TTC--------BCCCS
T ss_pred             eeEEEECCHHHHHHHHHhccCcEEeeccC-----------cEEEeecCCCcceEEEEeCCC---ccc--------ccccc
Confidence            56788889999999999999999876532           122344444556777877431   111        23567


Q ss_pred             ceEE---EEEeCCHHHHHHHHHHh
Q 013898          291 VQHL---ALVSEDIFRTLREMRKR  311 (434)
Q Consensus       291 vqHI---Af~vdDI~~av~~L~~~  311 (434)
                      +-|+   ++.++|-. .++.+-++
T Consensus        71 lkh~a~i~i~vp~~~-el~~lL~~   93 (244)
T 3e0r_A           71 RKKLARLIVKVENPL-EIEGILSK   93 (244)
T ss_dssp             SCSEEEEEEEESSHH-HHHHHHTT
T ss_pred             cceeeeEEEEcCCHH-HHHHHHhc
Confidence            6666   59999863 44444444

>3oms_A PHNB protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, methyltransferase, GL family; 1.90A {Bacillus cereus} SCOP: d.32.1.0

Probab=94.96  E-value=0.18  Score=42.93  Aligned_cols=88  Identities=9%  Similarity=0.058  Sum_probs=48.9

Q ss_pred             EecC-CHHHHHHHHHHhhCC-eeeee--eecccCcccccC-ceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcCC
Q 013898          214 GNVP-ELAPAVAYVKSFTGF-HEFAE--FTAEDVGTSESG-LNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEG  288 (434)
Q Consensus       214 i~V~-dl~~~~~fY~~vLGf-~~~~~--~~~~d~~~~~~g-~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G  288 (434)
                      +.+. |.+++++||+++||+ +....  +....+.  ..| +.-..+...  ...|.+.....+  ..        ...+
T Consensus        15 L~f~g~a~eA~~FY~~vFg~~~i~~~~~~~~~~~~--~~g~v~ha~l~i~--g~~lm~~d~~~~--~~--------~~~~   80 (138)
T 3oms_A           15 LMFEGKAEEAMNFYTSLFDQSEIVSISRYDENGPG--KEGTVIHATFTLN--GQEFMCIDSYVN--HN--------FTFT   80 (138)
T ss_dssp             EEESSCHHHHHHHHHTTSTTCCEEEEEECCTTCSS--CTTSEEEEEEEET--TEEEEEEECSSC--CS--------CCCC
T ss_pred             EEECCCHHHHHHHHHHHcCCceEEEEEecCCCCCC--CCCcEEEEEEEEC--CEEEEEEcCCCC--CC--------CCCC
Confidence            4556 899999999999994 55432  2211111  111 222223322  244555443211  00        0123


Q ss_pred             CCceEEEEEeCC---HHHHHHHHHHhcCCCCceecc
Q 013898          289 AGVQHLALVSED---IFRTLREMRKRSGVGGFEFMP  321 (434)
Q Consensus       289 ~GvqHIAf~vdD---I~~av~~L~~~~~~~Gv~fl~  321 (434)
                      ++ .++.+.|+|   +++..++|+ .    |.+++.
T Consensus        81 ~~-~~l~l~~~d~~evd~~~~~l~-~----Gg~v~~  110 (138)
T 3oms_A           81 PA-MSLYVTCETEEEIDTVFHKLA-Q----DGAILM  110 (138)
T ss_dssp             TT-SCEEEEESSHHHHHHHHHHHH-T----TCEEEE
T ss_pred             CC-EEEEEEcCCHHHHHHHHHHHH-c----CCeEec
Confidence            33 469999999   999999995 4    557764

>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}

Probab=84.58  E-value=2.5  Score=46.82  Aligned_cols=99  Identities=15%  Similarity=0.142  Sum_probs=57.1

Q ss_pred             eeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhc-----
Q 013898          212 AVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHN-----  286 (434)
Q Consensus       212 v~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~-----  286 (434)
                      ++.....++++++||.+.|++......    .    ..+.+..+.+.++.+.+.+.-........++++..+..-     
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (941)
T 3opy_B           16 FAPNISLLQASIDFYTNFLGFAIRKNS----N----QKLFWLQLEEDQNNVSIQLILDPEHAASVSQIDQNIRNLTRSLY   87 (941)
T ss_dssp             ECCC-CC-HHHHHHHHHTTCCEECSSC----S----CCC---EECCTTSCCEEEEECSSCSCHHHHHHHHHHHCCC----
T ss_pred             EeCCHHHHHHHHHHHHhhccceecccc----C----CcceeEEEecCCCeEEEEEEeccccchhHHHHHHHHhhhhcccc
Confidence            333444699999999999999765321    1    124566676666666665543211011233444443321     


Q ss_pred             ---CCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccC
Q 013898          287 ---EGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPS  322 (434)
Q Consensus       287 ---~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~  322 (434)
                         +-.=..|++|.|+||.+..+.|.+.    +.++-.-
T Consensus        88 ~~dW~~~~~~l~f~~~dL~~~~~~L~~~----~~~~Q~~  122 (941)
T 3opy_B           88 RKDWRSIQSNIAFKSSSLSKLVKLLKDG----GHPVQQS  122 (941)
T ss_dssp             ------CCCEEEEEESCHHHHHHHHHTT----TCCCBCS
T ss_pred             cccccccCceEEEEeCCHHHHHHHHHhc----CCccccC
Confidence               1112559999999999999999988    8765543

>1u69_A Hypothetical protein; structural genomics, MSCG, pseudomonas aeruginosa PAO1, HYPO protein, protein structure initiative (PSI); 1.60A {Pseudomonas aeruginosa} SCOP: d.32.1.7

Probab=82.82  E-value=11  Score=32.82  Aligned_cols=23  Identities=9%  Similarity=-0.159  Sum_probs=19.4

Q ss_pred             EecC-CHHHHHHHHHHhh-CCeeee
Q 013898          214 GNVP-ELAPAVAYVKSFT-GFHEFA  236 (434)
Q Consensus       214 i~V~-dl~~~~~fY~~vL-Gf~~~~  236 (434)
                      +++. +-+++++||+++| |.+...
T Consensus        11 L~f~g~a~eAi~FY~~vF~ga~i~~   35 (163)
T 1u69_A           11 LWYDSAALEAATFYAETFPDSAVLA   35 (163)
T ss_dssp             EEESSCHHHHHHHHHHHSTTEEEEE
T ss_pred             EEECCCHHHHHHHHHHHhCCCEEeE
Confidence            4455 8999999999999 998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	434
d1sqda2	230	d.32.1.3 (A:181-410) 4-hydroxyphenylpyruvate dioxy	2e-90
d1sp8a2	224	d.32.1.3 (A:208-431) 4-hydroxyphenylpyruvate dioxy	2e-82
d1sqia2	210	d.32.1.3 (A:157-366) 4-hydroxyphenylpyruvate dioxy	1e-64
d1t47a2	199	d.32.1.3 (A:179-377) 4-hydroxyphenylpyruvate dioxy	3e-59
d1cjxa2	203	d.32.1.3 (A:154-356) 4-hydroxyphenylpyruvate dioxy	4e-53
d1sp8a1	172	d.32.1.3 (A:36-207) 4-hydroxyphenylpyruvate dioxyg	1e-38
d1sp8a1	172	d.32.1.3 (A:36-207) 4-hydroxyphenylpyruvate dioxyg	6e-04
d1sqda1	167	d.32.1.3 (A:14-180) 4-hydroxyphenylpyruvate dioxyg	1e-32
d1sqda1	167	d.32.1.3 (A:14-180) 4-hydroxyphenylpyruvate dioxyg	9e-05
d1t47a1	163	d.32.1.3 (A:16-178) 4-hydroxyphenylpyruvate dioxyg	7e-23
d1t47a1	163	d.32.1.3 (A:16-178) 4-hydroxyphenylpyruvate dioxyg	3e-07
d1sqia1	149	d.32.1.3 (A:8-156) 4-hydroxyphenylpyruvate dioxyge	3e-19
d1sqia1	149	d.32.1.3 (A:8-156) 4-hydroxyphenylpyruvate dioxyge	0.001
d1cjxa1	150	d.32.1.3 (A:4-153) 4-hydroxyphenylpyruvate dioxyge	7e-14
d1jc4a_	145	d.32.1.4 (A:) Methylmalonyl-CoA epimerase {Propion	9e-04

>d1sqda2 d.32.1.3 (A:181-410) 4-hydroxyphenylpyruvate dioxygenase, HppD {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 230

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 4-hydroxyphenylpyruvate dioxygenase, HppD
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  271 bits (695), Expect = 2e-90
 Identities = 197/230 (85%), Positives = 216/230 (93%)

Query: 187 FLPGFEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTS 246
           FLPGFE  ++ SSFPLDYGIRRLDHAVGNVPEL PA+ YV  FTGFH+FAEFTA+DVGT+
Sbjct: 1   FLPGFERVEDASSFPLDYGIRRLDHAVGNVPELGPALTYVAGFTGFHQFAEFTADDVGTA 60

Query: 247 ESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLR 306
           ESGLNS VLA+NDEMVLLP+NEPV GTKRKSQIQTYLEHNEGAG+QHLAL+SEDIFRTLR
Sbjct: 61  ESGLNSAVLASNDEMVLLPINEPVHGTKRKSQIQTYLEHNEGAGLQHLALMSEDIFRTLR 120

Query: 307 EMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIF 366
           EMRKRS +GGF+FMPSPPPTYY+NLK R GDVL+D+QIK+CEELG+LVDRDDQGTLLQIF
Sbjct: 121 EMRKRSSIGGFDFMPSPPPTYYQNLKKRVGDVLSDDQIKECEELGILVDRDDQGTLLQIF 180

Query: 367 TKPVGDRPTIFIEIIQRVGCMLKDEEGKTYQKGGCGGFGKGNFSELFKSI 416
           TKP+GDRPTIFIEIIQRVGCM+KDEEGK YQ GGCGGFGKGNFSELFKSI
Sbjct: 181 TKPLGDRPTIFIEIIQRVGCMMKDEEGKAYQSGGCGGFGKGNFSELFKSI 230

>d1sp8a2 d.32.1.3 (A:208-431) 4-hydroxyphenylpyruvate dioxygenase, HppD {Corn (Zea mays) [TaxId: 4577]} Length = 224

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 4-hydroxyphenylpyruvate dioxygenase, HppD
species: Corn (Zea mays) [TaxId: 4577]

 Score =  251 bits (641), Expect = 2e-82
 Identities = 166/221 (75%), Positives = 192/221 (86%)

Query: 203 DYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMV 262
           DYG+ R DH VGNVPELAPA AY   FTGFHEFAEFT EDVGT+ESGLNS+VLANN E V
Sbjct: 4   DYGLSRFDHIVGNVPELAPAAAYFAGFTGFHEFAEFTTEDVGTAESGLNSMVLANNSENV 63

Query: 263 LLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPS 322
           LLP+NEPV GTKR+SQIQT+L+H+ G GVQH+AL S+D+ RTLREM+ RS +GGFEFM  
Sbjct: 64  LLPLNEPVHGTKRRSQIQTFLDHHGGPGVQHMALASDDVLRTLREMQARSAMGGFEFMAP 123

Query: 323 PPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFTKPVGDRPTIFIEIIQ 382
           P   YY  ++ RAGDVLT+ QIK+C+ELGVLVDRDDQG LLQIFTKPVGDRPT+F+EIIQ
Sbjct: 124 PTSDYYDGVRRRAGDVLTEAQIKECQELGVLVDRDDQGVLLQIFTKPVGDRPTLFLEIIQ 183

Query: 383 RVGCMLKDEEGKTYQKGGCGGFGKGNFSELFKSIEEYEKTL 423
           R+GCM KDE+G+ YQKGGCGGFGKGNFS+LFKSIE+YEK+L
Sbjct: 184 RIGCMEKDEKGQEYQKGGCGGFGKGNFSQLFKSIEDYEKSL 224

>d1sqia2 d.32.1.3 (A:157-366) 4-hydroxyphenylpyruvate dioxygenase, HppD {Human (Homo sapiens) [TaxId: 9606]} Length = 210

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 4-hydroxyphenylpyruvate dioxygenase, HppD
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  204 bits (521), Expect = 1e-64
 Identities = 86/227 (37%), Positives = 117/227 (51%), Gaps = 24/227 (10%)

Query: 188 LPGFEP---TDEISSFPLDYGIRRLDHAVGNVP--ELAPAVAYVKSFTGFHEFAEFTAED 242
           LPGFE     D +        +  +DH VGN P  E+  A  +      FH F       
Sbjct: 1   LPGFEAPTYKDTLLPKLPSCNLEIIDHIVGNQPDQEMESASEWYLKNLQFHRFWSVDDTQ 60

Query: 243 VGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIF 302
           V T  S L S+V+AN +E + +P+NEP  G ++KSQIQ Y+++N GAGVQH+AL +EDI 
Sbjct: 61  VHTEYSSLRSIVVANYEESIKMPINEPAPG-RKKSQIQEYVDYNGGAGVQHIALRTEDII 119

Query: 303 RTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTL 362
            T+R +R+R   G                  +   +   E +   EEL +LVD D++G L
Sbjct: 120 TTIRHLRER---GMEFLAVPSSYYRLLRENLKTSKIQVKENMDVLEELKILVDYDEKGYL 176

Query: 363 LQIFTKPVGDRPTIFIEIIQRVGCMLKDEEGKTYQKGGCGGFGKGNF 409
           LQIFTKP+ DRPT+F+E+IQR                   GFG GNF
Sbjct: 177 LQIFTKPMQDRPTLFLEVIQRHNHQ---------------GFGAGNF 208

>d1t47a2 d.32.1.3 (A:179-377) 4-hydroxyphenylpyruvate dioxygenase, HppD {Streptomyces avermitilis [TaxId: 33903]} Length = 199

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 4-hydroxyphenylpyruvate dioxygenase, HppD
species: Streptomyces avermitilis [TaxId: 33903]

 Score =  190 bits (484), Expect = 3e-59
 Identities = 94/218 (43%), Positives = 117/218 (53%), Gaps = 26/218 (11%)

Query: 207 RRLDHAVGNVP--ELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLL 264
           + +DH VGNV    +   V +     GF    EF  +D+ T  S L S V+A+    V  
Sbjct: 5   QAIDHCVGNVELGRMNEWVGFYNKVMGFTNMKEFVGDDIATEYSALMSKVVADGTLKVKF 64

Query: 265 PMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPP 324
           P+NEP    K+KSQI  YLE   GAGVQH+AL + DI  T+R MR      G +F+   P
Sbjct: 65  PINEPAL-AKKKSQIDEYLEFYGGAGVQHIALNTGDIVETVRTMRAA----GVQFLD-TP 118

Query: 325 PTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFTKPVGDRPTIFIEIIQRV 384
            +YY  L    GD      +    EL +L DRD+ G LLQIFTKPV DRPT+F EII+R 
Sbjct: 119 DSYYDTLGEWVGDT--RVPVDTLRELKILADRDEDGYLLQIFTKPVQDRPTVFFEIIERH 176

Query: 385 GCMLKDEEGKTYQKGGCGGFGKGNFSELFKSIE-EYEK 421
           G M               GFGKGNF  LF++IE E EK
Sbjct: 177 GSM---------------GFGKGNFKALFEAIEREQEK 199

>d1cjxa2 d.32.1.3 (A:154-356) 4-hydroxyphenylpyruvate dioxygenase, HppD {Pseudomonas fluorescens [TaxId: 294]} Length = 203

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 4-hydroxyphenylpyruvate dioxygenase, HppD
species: Pseudomonas fluorescens [TaxId: 294]

 Score =  174 bits (442), Expect = 4e-53
 Identities = 68/227 (29%), Positives = 108/227 (47%), Gaps = 34/227 (14%)

Query: 205 GIRRLDHAVGNVP--ELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMV 262
           G++ +DH   NV    +     + +    F E   F   D+    +GL S  ++  D M+
Sbjct: 2   GLKVIDHLTHNVYRGRMVYWANFYEKLFNFREARYF---DIKGEYTGLTSKAMSAPDGMI 58

Query: 263 LLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPS 322
            +P+NE    +K   QI+ +L    G G+QH+A +++D+ +T   ++K        FM +
Sbjct: 59  RIPLNEE--SSKGAGQIEEFLMQFNGEGIQHVAFLTDDLVKTWDALKKIG----MRFMTA 112

Query: 323 PPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRD----DQGTLLQIFTKPVGDRPTIFI 378
           PP TYY+ L+ R  D    E + Q +  G+L+D      D+  LLQIF++ +     +F 
Sbjct: 113 PPDTYYEMLEGRLPDH--GEPVDQLQARGILLDGSSVEGDKRLLLQIFSETLMG--PVFF 168

Query: 379 EIIQRVGCMLKDEEGKTYQKGGCGGFGKGNFSELFKSIEEYEKTLGA 425
           E IQR G                 GFG+GNF  LF+SIE  +   G 
Sbjct: 169 EFIQRKGDD---------------GFGEGNFKALFESIERDQVRRGV 200

>d1sp8a1 d.32.1.3 (A:36-207) 4-hydroxyphenylpyruvate dioxygenase, HppD {Corn (Zea mays) [TaxId: 4577]} Length = 172

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 4-hydroxyphenylpyruvate dioxygenase, HppD
species: Corn (Zea mays) [TaxId: 4577]

 Score =  135 bits (340), Expect = 1e-38
 Identities = 101/174 (58%), Positives = 118/174 (67%), Gaps = 6/174 (3%)

Query: 20  RQNPKSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSG 79
           R NP+SDRF    FHHVE WC DA + A RFS+GLG P+ A+SDLSTGN+ HAS LLRSG
Sbjct: 1   RFNPRSDRFHTLAFHHVELWCADAASAAGRFSFGLGAPLAARSDLSTGNSAHASLLLRSG 60

Query: 80  DLRFVFTAPYSPSISDAADAGNSSASLPTFDHAACRSFAASHGLAARSIAVEVEDADVAF 139
            L F+FTAPY+     A  A      LP+F  AA R FAA HGLA R++A+ V DA+ AF
Sbjct: 61  SLSFLFTAPYAHGADAATAA------LPSFSAAAARRFAADHGLAVRAVALRVADAEDAF 114

Query: 140 NTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSYKDKANHLDFLPGFEP 193
             SVA GA+P+  PV L     +AEV+LYGDVVLRYVSY D A    FLPGFE 
Sbjct: 115 RASVAAGARPAFGPVDLGRGFRLAEVELYGDVVLRYVSYPDGAAGEPFLPGFEG 168

>d1sp8a1 d.32.1.3 (A:36-207) 4-hydroxyphenylpyruvate dioxygenase, HppD {Corn (Zea mays) [TaxId: 4577]} Length = 172

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 4-hydroxyphenylpyruvate dioxygenase, HppD
species: Corn (Zea mays) [TaxId: 4577]

 Score = 38.3 bits (88), Expect = 6e-04
 Identities = 19/130 (14%), Positives = 32/130 (24%), Gaps = 16/130 (12%)

Query: 204 YGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVL 263
           +      H      + A A        G    A     D+ T  S   S++L +     L
Sbjct: 9   FHTLAFHHVELWCADAASAAGRFSFGLGAPLAAR---SDLSTGNSAHASLLLRSGSLSFL 65

Query: 264 L--------PMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVG 315
                            +   +  + +   + G  V+ +AL   D     R         
Sbjct: 66  FTAPYAHGADAATAALPSFSAAAARRFAADH-GLAVRAVALRVADAEDAFRASVAA---- 120

Query: 316 GFEFMPSPPP 325
           G      P  
Sbjct: 121 GARPAFGPVD 130

>d1sqda1 d.32.1.3 (A:14-180) 4-hydroxyphenylpyruvate dioxygenase, HppD {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 167

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 4-hydroxyphenylpyruvate dioxygenase, HppD
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  119 bits (299), Expect = 1e-32
 Identities = 111/159 (69%), Positives = 133/159 (83%)

Query: 21  QNPKSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGD 80
           +NPKSD+F+V RFHH+EFWC DATN ARRFSWGLGM   AKSDLSTGN VHASYLL SGD
Sbjct: 1   KNPKSDKFKVKRFHHIEFWCGDATNVARRFSWGLGMRFSAKSDLSTGNMVHASYLLTSGD 60

Query: 81  LRFVFTAPYSPSISDAADAGNSSASLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFN 140
           LRF+FTAPYSPS+S       ++AS+P+FDH +CRSF +SHGL  R++A+EVEDA+ AF+
Sbjct: 61  LRFLFTAPYSPSLSAGEIKPTTTASIPSFDHGSCRSFFSSHGLGVRAVAIEVEDAESAFS 120

Query: 141 TSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSYK 179
            SVA+GA PSSPP++L+    IAEV+LYGDVVLRYVSYK
Sbjct: 121 ISVANGAIPSSPPIVLNEAVTIAEVKLYGDVVLRYVSYK 159

>d1sqda1 d.32.1.3 (A:14-180) 4-hydroxyphenylpyruvate dioxygenase, HppD {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 167

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 4-hydroxyphenylpyruvate dioxygenase, HppD
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 40.6 bits (94), Expect = 9e-05
 Identities = 18/143 (12%), Positives = 35/143 (24%), Gaps = 23/143 (16%)

Query: 204 YGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVL 263
           + ++R  H      +            G    A+              S +L + D   L
Sbjct: 8   FKVKRFHHIEFWCGDATNVARRFSWGLGMRFSAKSDLSTGNM---VHASYLLTSGDLRFL 64

Query: 264 L--------------PMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMR 309
                          P       +      +++   +   GV+ +A+  ED         
Sbjct: 65  FTAPYSPSLSAGEIKPTTTASIPSFDHGSCRSFFSSHGL-GVRAVAIEVEDAESAFSISV 123

Query: 310 KRSGVGGFEFMPSPPPTYYKNLK 332
                 G     SPP    + + 
Sbjct: 124 AN----GAIPS-SPPIVLNEAVT 141

>d1t47a1 d.32.1.3 (A:16-178) 4-hydroxyphenylpyruvate dioxygenase, HppD {Streptomyces avermitilis [TaxId: 33903]} Length = 163

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 4-hydroxyphenylpyruvate dioxygenase, HppD
species: Streptomyces avermitilis [TaxId: 33903]

 Score = 92.6 bits (229), Expect = 7e-23
 Identities = 49/179 (27%), Positives = 68/179 (37%), Gaps = 20/179 (11%)

Query: 26  DRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVF 85
           D F V     V F   +A   A  +S   GM +VA S    G+   ASY+L +G  RFV 
Sbjct: 1   DPFPVKGMDAVVFAVGNAKQAAHYYSTAFGMQLVAYSGPENGSRETASYVLTNGSARFVL 60

Query: 86  TAPYSPSISDAADAGNSSASLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAH 145
           T+   P+               T          A HG     +A+EV DA  A   ++ H
Sbjct: 61  TSVIKPA---------------TPWGHFLADHVAEHGDGVVDLAIEVPDARAAHAYAIEH 105

Query: 146 GAKPSSPPVILDNL---AVIAEVQLYGDVVLRYVSYKDKANHLDFLPGFEPTDEISSFP 201
           GA+  + P  L +     V+A +  YG      V          +LPG+     I   P
Sbjct: 106 GARSVAEPYELKDEHGTVVLAAIATYGKTRHTLVDRTGYDG--PYLPGYVAAAPIVEPP 162

>d1t47a1 d.32.1.3 (A:16-178) 4-hydroxyphenylpyruvate dioxygenase, HppD {Streptomyces avermitilis [TaxId: 33903]} Length = 163

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 4-hydroxyphenylpyruvate dioxygenase, HppD
species: Streptomyces avermitilis [TaxId: 33903]

 Score = 47.5 bits (112), Expect = 3e-07
 Identities = 32/174 (18%), Positives = 49/174 (28%), Gaps = 17/174 (9%)

Query: 204 YGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVL 263
           + ++ +D  V  V     A  Y  +  G    A    E+         S VL N     +
Sbjct: 3   FPVKGMDAVVFAVGNAKQAAHYYSTAFGMQLVAYSGPENGSR---ETASYVLTNGSARFV 59

Query: 264 LPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSP 323
           L                   EH  G GV  LA+   D         +     G   +  P
Sbjct: 60  LTSVIKPATPWGHFLADHVAEH--GDGVVDLAIEVPDARAAHAYAIEH----GARSVAEP 113

Query: 324 PPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQ-GTLLQIFTK--PVGDRP 374
                ++       + T       +    LVDR    G  L  +    P+ + P
Sbjct: 114 YELKDEHGTVVLAAIAT-----YGKTRHTLVDRTGYDGPYLPGYVAAAPIVEPP 162

>d1sqia1 d.32.1.3 (A:8-156) 4-hydroxyphenylpyruvate dioxygenase, HppD {Human (Homo sapiens) [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 4-hydroxyphenylpyruvate dioxygenase, HppD
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.8 bits (201), Expect = 3e-19
 Identities = 40/161 (24%), Positives = 62/161 (38%), Gaps = 21/161 (13%)

Query: 23  PKSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLR 82
           PK +R R   FH V FW  +A   A  +   +G   +A   L TG+    S++++ G + 
Sbjct: 2   PKPERGRFLHFHSVTFWVGNAKQAASFYCNKMGFEPLAYKGLETGSREVVSHVIKQGKIV 61

Query: 83  FVFTAPYSPSISDAADAGNSSASLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTS 142
           FV  +  +P   +  D                      HG   + IA EVED +     +
Sbjct: 62  FVLCSALNPWNKEMGD------------------HLVKHGDGVKDIAFEVEDCEHIVQKA 103

Query: 143 VAHGAKPSSPPVILDN---LAVIAEVQLYGDVVLRYVSYKD 180
              GAK    P + ++       A +Q YGD     V   +
Sbjct: 104 RERGAKIVREPWVEEDKFGKVKFAVLQTYGDTTHTLVEKIN 144

>d1sqia1 d.32.1.3 (A:8-156) 4-hydroxyphenylpyruvate dioxygenase, HppD {Human (Homo sapiens) [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 4-hydroxyphenylpyruvate dioxygenase, HppD
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (85), Expect = 0.001
 Identities = 20/130 (15%), Positives = 41/130 (31%), Gaps = 12/130 (9%)

Query: 201 PLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDE 260
           P              V     A ++   +     F     + + T    + S V+     
Sbjct: 4   PERGRFLHFHSVTFWVGNAKQAASF---YCNKMGFEPLAYKGLETGSREVVSHVIKQGKI 60

Query: 261 MVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFM 320
           + +L             ++  +L  + G GV+ +A   ED    +++ R+R    G + +
Sbjct: 61  VFVLCSAL----NPWNKEMGDHLVKH-GDGVKDIAFEVEDCEHIVQKARER----GAKIV 111

Query: 321 PSPPPTYYKN 330
             P     K 
Sbjct: 112 REPWVEEDKF 121

>d1cjxa1 d.32.1.3 (A:4-153) 4-hydroxyphenylpyruvate dioxygenase, HppD {Pseudomonas fluorescens [TaxId: 294]} Length = 150

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 4-hydroxyphenylpyruvate dioxygenase, HppD
species: Pseudomonas fluorescens [TaxId: 294]

 Score = 66.5 bits (162), Expect = 7e-14
 Identities = 29/181 (16%), Positives = 57/181 (31%), Gaps = 34/181 (18%)

Query: 21  QNPKSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGD 80
           +NP      +  F  +EF       T       +G   V        +     +L R G+
Sbjct: 2   ENP----MGLMGFEFIEFASPTP-GTLEPIFEIMGFTKV------ATHRSKNVHLYRQGE 50

Query: 81  LRFVFTAPYSPSISDAADAGNSSASLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFN 140
           +  +     +   S                      FAA HG +   +A  V+D+  A+N
Sbjct: 51  INLILNNEPNSIASY---------------------FAAEHGPSVCGMAFRVKDSQKAYN 89

Query: 141 TSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSYKDKANHLDFLPGFEPTDEISSF 200
            ++  GA+P            +  ++  G   L  +    + + + +   F   + +   
Sbjct: 90  RALELGAQPIHIDT-GPMELNLPAIKGIGGAPLYLIDRFGEGSSI-YDIDFVYLEGVERN 147

Query: 201 P 201
           P
Sbjct: 148 P 148

>d1jc4a_ d.32.1.4 (A:) Methylmalonyl-CoA epimerase {Propionibacterium shermanii [TaxId: 1752]} Length = 145

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Methylmalonyl-CoA epimerase
domain: Methylmalonyl-CoA epimerase
species: Propionibacterium shermanii [TaxId: 1752]

 Score = 37.3 bits (85), Expect = 9e-04
 Identities = 24/120 (20%), Positives = 43/120 (35%), Gaps = 9/120 (7%)

Query: 206 IRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLP 265
              +DH     P+   A  Y +   G+HE       + G  E  +               
Sbjct: 5   FICIDHVAYACPDADEASKYYQETFGWHELHREENPEQGVVEIMMAPAAKLTEHMT---- 60

Query: 266 MNEPVFGTKRKSQIQTYL-EHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPP 324
             + +     +S +  +L +HN  AG+ H+A   +DI      +R+R    G + +   P
Sbjct: 61  QVQVMAPLNDESTVAKWLAKHNGRAGLHHMAWRVDDIDAVSATLRER----GVQLLYDEP 116

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	434
d1sqda2	230	4-hydroxyphenylpyruvate dioxygenase, HppD {Mouse-e	100.0
d1sp8a2	224	4-hydroxyphenylpyruvate dioxygenase, HppD {Corn (Z	100.0
d1t47a2	199	4-hydroxyphenylpyruvate dioxygenase, HppD {Strepto	100.0
d1sqia2	210	4-hydroxyphenylpyruvate dioxygenase, HppD {Human (	100.0
d1cjxa2	203	4-hydroxyphenylpyruvate dioxygenase, HppD {Pseudom	100.0
d1sp8a1	172	4-hydroxyphenylpyruvate dioxygenase, HppD {Corn (Z	99.93
d1t47a1	163	4-hydroxyphenylpyruvate dioxygenase, HppD {Strepto	99.91
d1sqda1	167	4-hydroxyphenylpyruvate dioxygenase, HppD {Mouse-e	99.9
d1cjxa1	150	4-hydroxyphenylpyruvate dioxygenase, HppD {Pseudom	99.89
d1sqia1	149	4-hydroxyphenylpyruvate dioxygenase, HppD {Human (	99.88
d1sqia1	149	4-hydroxyphenylpyruvate dioxygenase, HppD {Human (	99.78
d1sqda1	167	4-hydroxyphenylpyruvate dioxygenase, HppD {Mouse-e	99.69
d1t47a1	163	4-hydroxyphenylpyruvate dioxygenase, HppD {Strepto	99.69
d1sp8a1	172	4-hydroxyphenylpyruvate dioxygenase, HppD {Corn (Z	99.59
d1jc4a_	145	Methylmalonyl-CoA epimerase {Propionibacterium she	99.57
d1ss4a_	149	Hypothetical protein BC1747 {Bacillus cereus (stra	99.52
d1jc4a_	145	Methylmalonyl-CoA epimerase {Propionibacterium she	99.43
d1sqia2	210	4-hydroxyphenylpyruvate dioxygenase, HppD {Human (	99.43
d1cjxa1	150	4-hydroxyphenylpyruvate dioxygenase, HppD {Pseudom	99.4
d1sp8a2	224	4-hydroxyphenylpyruvate dioxygenase, HppD {Corn (Z	99.35
d1lgta1	131	2,3-Dihydroxybiphenyl dioxygenase (DHBD, BPHC enzy	99.35
d1cjxa2	203	4-hydroxyphenylpyruvate dioxygenase, HppD {Pseudom	99.33
d1sqda2	230	4-hydroxyphenylpyruvate dioxygenase, HppD {Mouse-e	99.33
d1ss4a_	149	Hypothetical protein BC1747 {Bacillus cereus (stra	99.33
d1kw3b1	132	2,3-Dihydroxybiphenyl dioxygenase (DHBD, BPHC enzy	99.3
d1zswa2	170	Hypothetical protein BC1024 {Bacillus cereus [TaxI	99.3
d1r9ca_	130	Fosfomycin resistance protein FosX {Mesorhizobium	99.3
d1t47a2	199	4-hydroxyphenylpyruvate dioxygenase, HppD {Strepto	99.27
d2i7ra1	115	Hypotheical protein SP0731 {Streptococcus pneumoni	99.23
d1zswa1	144	Hypothetical protein BC1024 {Bacillus cereus [TaxI	99.22
d1xqaa_	113	Hypothetical protein BC3580 {Bacillus cereus [TaxI	99.19
d1mpya2	162	Catechol 2,3-dioxygenase (metapyrocatechase) {Pseu	99.18
d1npba_	140	Fosfomycin resistance protein A (FosA) {Serratia m	99.17
d1nkia_	134	Fosfomycin resistance protein A (FosA) {Pseudomona	99.14
d1qipa_	176	Glyoxalase I (lactoylglutathione lyase) {Human (Ho	99.12
d1kw3b2	156	2,3-Dihydroxybiphenyl dioxygenase (DHBD, BPHC enzy	99.07
d1lgta1	131	2,3-Dihydroxybiphenyl dioxygenase (DHBD, BPHC enzy	99.0
d1zswa1	144	Hypothetical protein BC1024 {Bacillus cereus [TaxI	99.0
d1f1ua2	176	Homoprotocatechuate 2,3-dioxygenase {Arthrobacter	98.98
d2i7ra1	115	Hypotheical protein SP0731 {Streptococcus pneumoni	98.98
d1r9ca_	130	Fosfomycin resistance protein FosX {Mesorhizobium	98.97
d1xqaa_	113	Hypothetical protein BC3580 {Bacillus cereus [TaxI	98.97
d1f9za_	135	Glyoxalase I (lactoylglutathione lyase) {Escherich	98.96
d2c21a1	139	Glyoxalase I (lactoylglutathione lyase) {Leishmani	98.95
d2pjsa1	111	Uncharacterized protein Atu1953 {Agrobacterium tum	98.94
d1twua_	137	Hypothetical protein YycE {Bacillus subtilis [TaxI	98.94
d1f9za_	135	Glyoxalase I (lactoylglutathione lyase) {Escherich	98.94
d1klla_	128	Mitomycin resistance protein D, MRD {Streptomyces	98.9
d1kw3b1	132	2,3-Dihydroxybiphenyl dioxygenase (DHBD, BPHC enzy	98.89
d1f1ua1	146	Homoprotocatechuate 2,3-dioxygenase {Arthrobacter	98.88
d1npba_	140	Fosfomycin resistance protein A (FosA) {Serratia m	98.87
d1qipa_	176	Glyoxalase I (lactoylglutathione lyase) {Human (Ho	98.86
d1zswa2	170	Hypothetical protein BC1024 {Bacillus cereus [TaxI	98.86
d1mpya1	145	Catechol 2,3-dioxygenase (metapyrocatechase) {Pseu	98.86
d1nkia_	134	Fosfomycin resistance protein A (FosA) {Pseudomona	98.85
d1f1ua1	146	Homoprotocatechuate 2,3-dioxygenase {Arthrobacter	98.82
d1mpya2	162	Catechol 2,3-dioxygenase (metapyrocatechase) {Pseu	98.77
d1klla_	128	Mitomycin resistance protein D, MRD {Streptomyces	98.72
d2pjsa1	111	Uncharacterized protein Atu1953 {Agrobacterium tum	98.72
d1kw3b2	156	2,3-Dihydroxybiphenyl dioxygenase (DHBD, BPHC enzy	98.55
d1twua_	137	Hypothetical protein YycE {Bacillus subtilis [TaxI	98.54
d1mpya1	145	Catechol 2,3-dioxygenase (metapyrocatechase) {Pseu	98.53
d1xy7a_	135	Hypothetical protein At5g48480 {Thale cress (Arabi	98.45
d2c21a1	139	Glyoxalase I (lactoylglutathione lyase) {Leishmani	98.42
d1jifa_	122	Bleomycin resistance protein, BRP {Streptomyces ve	98.4
d1f1ua2	176	Homoprotocatechuate 2,3-dioxygenase {Arthrobacter	98.3
d1ecsa_	120	Bleomycin resistance protein, BRP {Klebsiella pneu	98.26
d1xy7a_	135	Hypothetical protein At5g48480 {Thale cress (Arabi	98.25
d1ecsa_	120	Bleomycin resistance protein, BRP {Klebsiella pneu	98.2
d1jifa_	122	Bleomycin resistance protein, BRP {Streptomyces ve	98.15
d1xrka_	120	Bleomycin resistance protein, BRP {Streptoalloteic	97.98
d1xrka_	120	Bleomycin resistance protein, BRP {Streptoalloteic	97.88
d1u6la_	137	Hypothetical protein PA1353 {Pseudomonas aeruginos	97.49
d1u7ia_	134	Hypothetical protein PA1358 {Pseudomonas aeruginos	97.24
d1tsja_	129	Hypothetical protein MW1090 {Staphylococcus aureus	95.89
d1u6la_	137	Hypothetical protein PA1353 {Pseudomonas aeruginos	93.02
d1u69a_	156	Hypothetical protein PA2721 {Pseudomonas aeruginos	88.8
d1u7ia_	134	Hypothetical protein PA1358 {Pseudomonas aeruginos	82.54

>d1sqda2 d.32.1.3 (A:181-410) 4-hydroxyphenylpyruvate dioxygenase, HppD {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 4-hydroxyphenylpyruvate dioxygenase, HppD
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=3.9e-63  Score=467.11  Aligned_cols=230  Identities=86%  Similarity=1.406  Sum_probs=196.5

Q ss_pred             CCCCCccCCCCCCCCcccceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEe
Q 013898          187 FLPGFEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPM  266 (434)
Q Consensus       187 ~~p~f~~~~~~~~~~~~~~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L  266 (434)
                      |+|||++.+.....+.+.++++||||+++|+||++|++||+++|||...+....+++.+..++++|+++.++++.+++++
T Consensus         1 flPGf~~~~~~~~~~~~~gl~~IDHI~iaVpdld~a~~~y~~~lG~~~~~~~~~~di~~~~~~l~s~v~~s~~g~v~~~l   80 (230)
T d1sqda2           1 FLPGFERVEDASSFPLDYGIRRLDHAVGNVPELGPALTYVAGFTGFHQFAEFTADDVGTAESGLNSAVLASNDEMVLLPI   80 (230)
T ss_dssp             CCTTCEECCTTTCCCCCSSEEEEEEEEEECSCHHHHHHHHHHHHCCEEEEEEC--------CCEEEEEEECTTSCSEEEE
T ss_pred             CCCCCEeCCccccCCCCCCcCccCcceecccCHHHHHHHHHHHcCCeeeEEecccccccceeeEeeccccCCCcccceeE
Confidence            78999988755434556789999999999999999999999999999998887677777788899999999999999999


Q ss_pred             cccCCCCCCCchHHHHHhhcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHH
Q 013898          267 NEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQ  346 (434)
Q Consensus       267 ~e~~~g~~~~s~i~~fl~~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~  346 (434)
                      +|+..++++.|||++||++++|+|||||||+|+||.+++++|++++..+|++|+..||++||++|.+|++..++++++++
T Consensus        81 ~E~~~~~~~~sqi~~FL~~~~G~GiQHIAf~tdDI~aav~~LrarG~~~G~~f~~~~p~~YY~~l~~r~~~~l~~~~~~~  160 (230)
T d1sqda2          81 NEPVHGTKRKSQIQTYLEHNEGAGLQHLALMSEDIFRTLREMRKRSSIGGFDFMPSPPPTYYQNLKKRVGDVLSDDQIKE  160 (230)
T ss_dssp             EEECCC---CCHHHHHHHHHTSCEEEEEEEEESCHHHHHHHHHHHGGGTSCCBCCCCCHHHHHHHHHHHTTTSCHHHHHH
T ss_pred             EeecCCCCCcchHHHHHhhccCCceeEEEEEeCCHHHHHHHHHHhhcccCcccccCCchHHHHHHHHHhccccchHhHHH
Confidence            99875556789999999999999999999999999999999999865568888755679999999999997788999999


Q ss_pred             HHhcCeEEecCCCceEEEEEccccCCCCCeEEEEEEeeccccccccCcccccCCCCCcCCccHHHHHHHH
Q 013898          347 CEELGVLVDRDDQGTLLQIFTKPVGDRPTIFIEIIQRVGCMLKDEEGKTYQKGGCGGFGKGNFSELFKSI  416 (434)
Q Consensus       347 l~~~~iL~D~d~~g~llqifT~~~~~r~~~FfEiIqR~g~~~~~~~~~~~~~~~~~GFG~gN~~aLf~ai  416 (434)
                      |+++|||||+|++|+||||||+|+++|||||||||||+|+.++..++|..++.+++|||+|||+||||||
T Consensus       161 l~~~~IL~D~d~~g~llqifT~~~~~~~t~FfEiIqR~G~~~~~~~~~~~~r~~a~GFG~gN~~aLf~ai  230 (230)
T d1sqda2         161 CEELGILVDRDDQGTLLQIFTKPLGDRPTIFIEIIQRVGCMMKDEEGKAYQSGGCGGFGKGNFSELFKSI  230 (230)
T ss_dssp             HHHHTCEEEECSSEEEEEEEBCCSSSSSCCEEEEEEEEECBC-------CBCTTTTCSSTTHHHHHHHHC
T ss_pred             HHHcCCcccCCCCCeEEEEeccccCCCCCcEEEEEEecCCccccccccccccccCCCCchhHHHHHHhhC
Confidence            9999999999999999999999999999999999999999999999998899999999999999999996

>d1sp8a2 d.32.1.3 (A:208-431) 4-hydroxyphenylpyruvate dioxygenase, HppD {Corn (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 4-hydroxyphenylpyruvate dioxygenase, HppD
species: Corn (Zea mays) [TaxId: 4577]

Probab=100.00  E-value=2.4e-62  Score=460.48  Aligned_cols=221  Identities=75%  Similarity=1.265  Sum_probs=201.0

Q ss_pred             ccceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHH
Q 013898          203 DYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTY  282 (434)
Q Consensus       203 ~~~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~f  282 (434)
                      +.++++||||+++|+||++|+.||+++|||+..+++..+++.+..++++|+++.++++.++++++++..++..+|++++|
T Consensus         4 d~Gl~~IDHI~i~V~dld~a~~fY~~vLGf~~~~~~~~~~i~~~~~~l~s~v~~~~~g~v~~~l~E~~~~~~~~s~i~~F   83 (224)
T d1sp8a2           4 DYGLSRFDHIVGNVPELAPAAAYFAGFTGFHEFAEFTTEDVGTAESGLNSMVLANNSENVLLPLNEPVHGTKRRSQIQTF   83 (224)
T ss_dssp             CCSEEEEEEEEEECSCHHHHHHHHHHHHCCEEEEEEEC--------CEEEEEEECSSSCCEEEEEEECCCSSSCCHHHHH
T ss_pred             CCCcCeeeeeEEeccCHHHHHHHHHHHhCCEEEEEeccccccccceeEEEEEEEcCCCccceeeeeecCCCCCccHHHHH
Confidence            45799999999999999999999999999999998877777777888999999999999999999986555678999999


Q ss_pred             HhhcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceE
Q 013898          283 LEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTL  362 (434)
Q Consensus       283 l~~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~l  362 (434)
                      |+.++|+|||||||.|+||.+++++|++++..+|++|+..||.+||+++.+|.+..++++++++|+++|||||+|++|+|
T Consensus        84 L~~~~g~GiqHIAf~vdDI~~av~~L~arGv~~G~~fl~~p~~~Yy~~~~~~~~~~l~~~~~~~l~~~~iL~D~d~~g~l  163 (224)
T d1sp8a2          84 LDHHGGPGVQHMALASDDVLRTLREMQARSAMGGFEFMAPPTSDYYDGVRRRAGDVLTEAQIKECQELGVLVDRDDQGVL  163 (224)
T ss_dssp             HHHHTSSEEEEEEEEETTHHHHHHHHHTSGGGTSCCBCCCCCHHHHHHHHHHHTTTSCHHHHHHHHHHTCEEEECSSEEE
T ss_pred             HHhccCCCceeEEEEeCCHHHHHHHHHhccccccceecccchhhhhhhHHhhccccccHHHHHHHHHhCCCCCCCCCCEE
Confidence            99999999999999999999999999998655678899988889999999999877899999999999999999999999


Q ss_pred             EEEEccccCCCCCeEEEEEEeeccccccccCcccccCCCCCcCCccHHHHHHHHHHHHHHh
Q 013898          363 LQIFTKPVGDRPTIFIEIIQRVGCMLKDEEGKTYQKGGCGGFGKGNFSELFKSIEEYEKTL  423 (434)
Q Consensus       363 lqifT~~~~~r~~~FfEiIqR~g~~~~~~~~~~~~~~~~~GFG~gN~~aLf~aie~~~~~~  423 (434)
                      |||||+|+++|||||||||||+|+++++..||-++++||+|||+|||+|||||||++|+.|
T Consensus       164 lQifT~~~~~~~~~FfEiIqR~g~~~~~~~~~~~~~~~~~GfG~gN~~aLf~sie~~q~~~  224 (224)
T d1sp8a2         164 LQIFTKPVGDRPTLFLEIIQRIGCMEKDEKGQEYQKGGCGGFGKGNFSQLFKSIEDYEKSL  224 (224)
T ss_dssp             EEEEBCCSSSSSCCEEEEEEEEECCCCSSSCSCCCCTTTTCSSGGGHHHHHHHHHHHHTTC
T ss_pred             EEEeeecccCCCCeEEEEEEecCccccccccccccccCCCcCChhHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999999999999865

>d1t47a2 d.32.1.3 (A:179-377) 4-hydroxyphenylpyruvate dioxygenase, HppD {Streptomyces avermitilis [TaxId: 33903]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 4-hydroxyphenylpyruvate dioxygenase, HppD
species: Streptomyces avermitilis [TaxId: 33903]

Probab=100.00  E-value=2.8e-60  Score=437.91  Aligned_cols=194  Identities=46%  Similarity=0.771  Sum_probs=182.9

Q ss_pred             ceeeeeeeeEecC--CHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHH
Q 013898          205 GIRRLDHAVGNVP--ELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTY  282 (434)
Q Consensus       205 ~l~~iDHv~i~V~--dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~f  282 (434)
                      .+++||||+++|+  +|++|+.||+++|||++.+++..+++.+..++++|+++.++++.++++|++|.+. ...|+|++|
T Consensus         3 ~f~~IDHia~avp~~~l~~av~fY~~vfGf~~~~~~~~~di~~~~~~l~s~~~~s~~~~v~l~lne~~~~-~~~s~i~~F   81 (199)
T d1t47a2           3 TFQAIDHCVGNVELGRMNEWVGFYNKVMGFTNMKEFVGDDIATEYSALMSKVVADGTLKVKFPINEPALA-KKKSQIDEY   81 (199)
T ss_dssp             SCCEEEEEEEECCTTCHHHHHHHHHHHHCCEECSCCBCHHHHTTTTSEEEEEEECTTSCSEEEEEEECCS-SSCCHHHHH
T ss_pred             cceeeCceEeccChhhHHHHHHHHHHHhCCeEeeEecccccccceeEEEEeeccccccccceeecccCcc-ccccchhhh
Confidence            4789999999999  9999999999999999998876666777788899999999999999999988653 568999999


Q ss_pred             HhhcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceE
Q 013898          283 LEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTL  362 (434)
Q Consensus       283 l~~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~l  362 (434)
                      |++++|+|||||||+|+||.+++++|+++    |++||++ |++||++|.+|++  ++++++++|+++|||||+|++|+|
T Consensus        82 L~~~~g~GiQHIAl~tdDI~~av~~L~~~----G~~fL~~-p~~YY~~l~~r~~--~~~~~~~~l~~~~IL~D~d~~g~l  154 (199)
T d1t47a2          82 LEFYGGAGVQHIALNTGDIVETVRTMRAA----GVQFLDT-PDSYYDTLGEWVG--DTRVPVDTLRELKILADRDEDGYL  154 (199)
T ss_dssp             HHHHTSCEEEEEEEECSCHHHHHHHHHHT----TCCBCCC-CGGGTTSHHHHHC--CCSSCHHHHHHHTCEEEECSSCEE
T ss_pred             hhhcCCCcceEEEEEcCCHHHHHHHHHHc----CCCCCCC-ChHHHHHHHHHhc--ccccCHHHHHhcCeEEecCCCCeE
Confidence            99999999999999999999999999999    9999987 5999999999999  889999999999999999999999


Q ss_pred             EEEEccccCCCCCeEEEEEEeeccccccccCcccccCCCCCcCCccHHHHHHHHHHHHH
Q 013898          363 LQIFTKPVGDRPTIFIEIIQRVGCMLKDEEGKTYQKGGCGGFGKGNFSELFKSIEEYEK  421 (434)
Q Consensus       363 lqifT~~~~~r~~~FfEiIqR~g~~~~~~~~~~~~~~~~~GFG~gN~~aLf~aie~~~~  421 (434)
                      |||||+|+++|||||||||||+|+               .|||+|||+|||+|||++|+
T Consensus       155 lqift~~~~~~~~~FfEiiqR~g~---------------~GfG~~N~~alf~a~e~~q~  198 (199)
T d1t47a2         155 LQIFTKPVQDRPTVFFEIIERHGS---------------MGFGKGNFKALFEAIEREQE  198 (199)
T ss_dssp             EEEEBCCSSSSSCCEEEEEEEEBC---------------CCCSTHHHHHHHHHHHHHHH
T ss_pred             EEEEecccCCCCceeEEEEEEcCC---------------CCccccHHHHHHHHHHHHhc
Confidence            999999999999999999999997               99999999999999999986

>d1sqia2 d.32.1.3 (A:157-366) 4-hydroxyphenylpyruvate dioxygenase, HppD {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 4-hydroxyphenylpyruvate dioxygenase, HppD
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-56  Score=414.63  Aligned_cols=188  Identities=45%  Similarity=0.775  Sum_probs=163.5

Q ss_pred             ccceeeeeeeeEecCC--HHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHH
Q 013898          203 DYGIRRLDHAVGNVPE--LAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQ  280 (434)
Q Consensus       203 ~~~l~~iDHv~i~V~d--l~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~  280 (434)
                      +.++++||||+++|++  |++|++||+++|||++.+.++.+++.+.+++++|+++.++++.++++|++|.++ ...|||+
T Consensus        19 ~~gl~~IDHv~~~Vp~~~ld~av~fY~~vfGf~~~~~~~~~~i~~~~~~l~s~~l~s~~~~i~~~lne~~~~-~~~sqi~   97 (210)
T d1sqia2          19 SCNLEIIDHIVGNQPDQEMESASEWYLKNLQFHRFWSVDDTQVHTEYSSLRSIVVANYEESIKMPINEPAPG-RKKSQIQ   97 (210)
T ss_dssp             CCCEEEEEEEEEECCTTCHHHHHHHHHHHHCCEEECCC-----------CEEEEEECTTSCCEEEEEECC------CHHH
T ss_pred             CCCcceeCceEeccCchhHHHHHHHHHHHhCCEEEEEecccccCCceeEEEEEEEEecCccccccccccCCC-CcccHHH
Confidence            4689999999999996  999999999999999998877667777788999999999999999999998753 4679999


Q ss_pred             HHHhhcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcC--CCCChhHHHHHHhcCeEEecCC
Q 013898          281 TYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAG--DVLTDEQIKQCEELGVLVDRDD  358 (434)
Q Consensus       281 ~fl~~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~--~~l~~~~~~~l~~~~iL~D~d~  358 (434)
                      +||+.++|+|||||||+|+||.+++++|+++    |++||++ |++||++|.+|++  ..+..+++++|+++|||||+|+
T Consensus        98 ~fl~~~~G~GiQHIAf~t~DI~~av~~L~~~----Gv~fL~~-P~~YY~~l~~r~~~~~~~~~~~~~~l~~~~IL~D~d~  172 (210)
T d1sqia2          98 EYVDYNGGAGVQHIALRTEDIITTIRHLRER----GMEFLAV-PSSYYRLLRENLKTSKIQVKENMDVLEELKILVDYDE  172 (210)
T ss_dssp             HHHHHHTSSEEEEEEEEESCHHHHHHHHHHH----TCCBCCC-CHHHHHHHHHHHHTCSSCCCSCHHHHHHHTCEEECCT
T ss_pred             HHHhhcCCCCeeEEEEEcCCHHHHHHHHHHc----CCCCCCC-CcchhhhHHhhhhcccccccccHHHHHhcCEEEecCC
Confidence            9999999999999999999999999999999    9999987 5999999999976  3467889999999999999999


Q ss_pred             CceEEEEEccccCCCCCeEEEEEEeeccccccccCcccccCCCCCcCCccHHH
Q 013898          359 QGTLLQIFTKPVGDRPTIFIEIIQRVGCMLKDEEGKTYQKGGCGGFGKGNFSE  411 (434)
Q Consensus       359 ~g~llqifT~~~~~r~~~FfEiIqR~g~~~~~~~~~~~~~~~~~GFG~gN~~a  411 (434)
                      +|+||||||+|+++|||||||||||+|+               +|||+|||||
T Consensus       173 ~g~llqifT~~~~~~~~~FfEiIqR~g~---------------~GFG~gNf~a  210 (210)
T d1sqia2         173 KGYLLQIFTKPMQDRPTLFLEVIQRHNH---------------QGFGAGNFNS  210 (210)
T ss_dssp             TCEEEEEEBCCSSSSSCCEEEEEEEESC---------------CCCSHHHHHC
T ss_pred             CCeEEEEeecCcCCCCceEEEEEEECCC---------------CccCccCcCC
Confidence            9999999999999999999999999997               9999999996

>d1cjxa2 d.32.1.3 (A:154-356) 4-hydroxyphenylpyruvate dioxygenase, HppD {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 4-hydroxyphenylpyruvate dioxygenase, HppD
species: Pseudomonas fluorescens [TaxId: 294]

Probab=100.00  E-value=4.5e-55  Score=405.46  Aligned_cols=192  Identities=35%  Similarity=0.607  Sum_probs=175.9

Q ss_pred             ceeeeeeeeEecC--CHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHH
Q 013898          205 GIRRLDHAVGNVP--ELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTY  282 (434)
Q Consensus       205 ~l~~iDHv~i~V~--dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~f  282 (434)
                      ++++||||+++|+  +|++|+.||+++|||++.+.++.   .+...+++|+++.++++.++++++++..  ...|||++|
T Consensus         2 Gl~~IDHIa~~V~~~~l~~a~~FY~~vlGf~~~~~~di---~~~~~~l~s~~~~~~~~~~~~~l~~~~~--~~~sqi~~f   76 (203)
T d1cjxa2           2 GLKVIDHLTHNVYRGRMVYWANFYEKLFNFREARYFDI---KGEYTGLTSKAMSAPDGMIRIPLNEESS--KGAGQIEEF   76 (203)
T ss_dssp             SEEEEEEECEECCTTHHHHHHHHHHHHHCCEEEEEEEE---ECSSCEEEEEEEECTTSSCEEEEEEECT--TCCSHHHHH
T ss_pred             CCCeeCeeEeccChhhHHHHHHHHHHHhCCEEeEEEec---CCCcceEEEEEeeccccccceecccCCC--CCccHHHHH
Confidence            6899999999999  89999999999999999887753   3345669999999999999999998863  468999999


Q ss_pred             HhhcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecC----C
Q 013898          283 LEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRD----D  358 (434)
Q Consensus       283 l~~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d----~  358 (434)
                      ++.++|+|||||||.|+||.+++++|+++    ||+||++||.+||+.|.+|++  ++++++++|+++|||||+|    +
T Consensus        77 l~~~~g~GiqHIAf~vdDI~aav~~L~~~----Gv~fL~~pp~~Yy~~l~~~~~--~~~~~~~~l~~~~iL~D~d~~~~~  150 (203)
T d1cjxa2          77 LMQFNGEGIQHVAFLTDDLVKTWDALKKI----GMRFMTAPPDTYYEMLEGRLP--DHGEPVDQLQARGILLDGSSVEGD  150 (203)
T ss_dssp             HHHHTSSBCCEEEEEESCHHHHHHHHHHT----TCCBCCCCCHHHHHTHHHHST--TCCCCHHHHHHHTCEEEEEEETTE
T ss_pred             HHhcCCCCCceEEEEeCCHHHHHHHHHhc----CCccccCchhhHHHHHHHhhc--cccchHHHHHHcCEEEecCCCCCC
Confidence            99999999999999999999999999999    999999887899999999999  7888999999999999987    3


Q ss_pred             CceEEEEEccccCCCCCeEEEEEEeeccccccccCcccccCCCCCcCCccHHHHHHHHHHHHHHhC
Q 013898          359 QGTLLQIFTKPVGDRPTIFIEIIQRVGCMLKDEEGKTYQKGGCGGFGKGNFSELFKSIEEYEKTLG  424 (434)
Q Consensus       359 ~g~llqifT~~~~~r~~~FfEiIqR~g~~~~~~~~~~~~~~~~~GFG~gN~~aLf~aie~~~~~~~  424 (434)
                      +|+||||||+|+++  |||||||||+|+               +|||+|||+|||+|||++|+.-+
T Consensus       151 ~~~llqifT~~~~~--~~FfEiiqR~g~---------------~GfG~~N~~al~~a~e~~q~~rg  199 (203)
T d1cjxa2         151 KRLLLQIFSETLMG--PVFFEFIQRKGD---------------DGFGEGNFKALFESIERDQVRRG  199 (203)
T ss_dssp             EEEEEEEEBCCCBT--TBEEEEEEEEBC---------------CSCCHHHHHHHHHHHHHHHHHHT
T ss_pred             CceEEEEeccCCCC--CeEEEEEEEcCC---------------CccchhhHHHHHHHHHHHHHHhC
Confidence            58999999999986  699999999997               99999999999999999997654

>d1sp8a1 d.32.1.3 (A:36-207) 4-hydroxyphenylpyruvate dioxygenase, HppD {Corn (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 4-hydroxyphenylpyruvate dioxygenase, HppD
species: Corn (Zea mays) [TaxId: 4577]

Probab=99.93  E-value=5.2e-25  Score=197.18  Aligned_cols=168  Identities=60%  Similarity=0.960  Sum_probs=140.3

Q ss_pred             ccCCCCCCCCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCccccc
Q 013898           20 RQNPKSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADA   99 (434)
Q Consensus        20 ~~~~~~~~~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~   99 (434)
                      +-||.++++.++++|||+|+|+|++++++||+++|||+.+++...+.+.+...+.++++|++.++++.+........   
T Consensus         1 ~~~~~~d~~~i~~~~Hi~i~V~D~e~a~~FY~~~LGf~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---   77 (172)
T d1sp8a1           1 RFNPRSDRFHTLAFHHVELWCADAASAAGRFSFGLGAPLAARSDLSTGNSAHASLLLRSGSLSFLFTAPYAHGADAA---   77 (172)
T ss_dssp             CCCCCCCSSCEEEEEEEEEECSCHHHHHHHHHHHHTCCEEEEESGGGTCCSEEEEEEEETTEEEEEEEECCSSCCGG---
T ss_pred             CCCCCCccCCcCEEEEEEEEeCCHHHHHHHHHHhhCceEEEEecccccceeEEEEEeccCCeeeEEeeccCCCchhh---
Confidence            35899999999999999999999999999999999999999877666656677888999999999987654321100   


Q ss_pred             CCCCCCCCCCChhHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEeecc
Q 013898          100 GNSSASLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSYK  179 (434)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd~~  179 (434)
                         ....+....+.++.++..||.|++||||+|+|+++++++++++|++++.+|....++++++.|+++|+++|+|++++
T Consensus        78 ---~~~~~~~~~~~~~~~~~~~g~Gi~Hiaf~VdDi~aa~~~l~~~Ga~~~~~P~~~~~g~~~a~v~~~g~~~~~lve~~  154 (172)
T d1sp8a1          78 ---TAALPSFSAAAARRFAADHGLAVRAVALRVADAEDAFRASVAAGARPAFGPVDLGRGFRLAEVELYGDVVLRYVSYP  154 (172)
T ss_dssp             ---GCSSTTCCHHHHHHHHHHHSSEEEEEEEEESCHHHHHHHHHTTTCCEEEEEEEEETTEEEEEEEEETTEEEEEEECC
T ss_pred             ---hcccccCCcchhhhhhhhcCCceEEEEEeeCcHHHHHHHHHHCcCEeccCCccCCCCEEEEEEECCCCcEEEEEecC
Confidence               01111223467789999999999999999999999999999999999999988778899999999999999999975


Q ss_pred             CcCCCC--CCCCCCccCC
Q 013898          180 DKANHL--DFLPGFEPTD  195 (434)
Q Consensus       180 ~~~~~g--~~~p~f~~~~  195 (434)
                      +  |.+  .|||||++++
T Consensus       155 ~--~~~~~~~lpg~~~~~  170 (172)
T d1sp8a1         155 D--GAAGEPFLPGFEGVA  170 (172)
T ss_dssp             T--TGGGSSSSTTCEECC
T ss_pred             C--CCCCCccCCCCEeCC
Confidence            4  344  6999999875

>d1t47a1 d.32.1.3 (A:16-178) 4-hydroxyphenylpyruvate dioxygenase, HppD {Streptomyces avermitilis [TaxId: 33903]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 4-hydroxyphenylpyruvate dioxygenase, HppD
species: Streptomyces avermitilis [TaxId: 33903]

Probab=99.91  E-value=3e-24  Score=190.08  Aligned_cols=154  Identities=30%  Similarity=0.443  Sum_probs=131.5

Q ss_pred             CCCCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCC
Q 013898           26 DRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSAS  105 (434)
Q Consensus        26 ~~~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~  105 (434)
                      +++++.+||||+|+|+|++++++||+++|||+++.+...+.+.....+.++++|++.|+|+++..+...  .        
T Consensus         1 ~p~~i~~idHv~i~V~D~~~a~~fY~~~lGf~~v~~~~~~~~~~~~~~~~l~~~~~~i~l~~~~~~~~~--~--------   70 (163)
T d1t47a1           1 DPFPVKGMDAVVFAVGNAKQAAHYYSTAFGMQLVAYSGPENGSRETASYVLTNGSARFVLTSVIKPATP--W--------   70 (163)
T ss_dssp             CCSCCCEEEEEEEECSCHHHHHHHHHHTSCCEEEEEESGGGTCCSEEEEEEEETTEEEEEEEESSCCSH--H--------
T ss_pred             CCCCCceEeEEEEEeCCHHHHHHHHHHHhCCeEEeeecccccceeEEEEEEecCCEEEEEeccCCCCCc--c--------
Confidence            356799999999999999999999999999999998876666666788999999999999987654310  0        


Q ss_pred             CCCCChhHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccC---ceEEEEEEecCCeEEEEeeccCcC
Q 013898          106 LPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDN---LAVIAEVQLYGDVVLRYVSYKDKA  182 (434)
Q Consensus       106 ~~~~~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~---~~~~~~i~~~Gg~~~~fvd~~~~~  182 (434)
                           .....+++..||.|++||||+|+|+++++++++++|++++.+|....+   .+.++.|+++||+.|+|+|+  ..
T Consensus        71 -----~~~~~~~~~~~g~G~~hiaf~VdDid~a~~~l~~~Ga~~~~~P~~~~d~~G~v~~a~I~~~g~~~~~lier--~~  143 (163)
T d1t47a1          71 -----GHFLADHVAEHGDGVVDLAIEVPDARAAHAYAIEHGARSVAEPYELKDEHGTVVLAAIATYGKTRHTLVDR--TG  143 (163)
T ss_dssp             -----HHHHHHHHHHHCSEEEEEEEECSCHHHHHHHHHHTTCCEEEEEEEEEETTEEEEEEEEECSTTCEEEEEEE--EE
T ss_pred             -----ccccchhhhcCCCceEEEEEeeCCHHHHHHHHHHCCCeEEecCcceeCCCCEEEEEEEecCCCceEEEEec--cC
Confidence                 134678889999999999999999999999999999999988876533   37789999999999999997  45


Q ss_pred             CCCCCCCCCccCCC
Q 013898          183 NHLDFLPGFEPTDE  196 (434)
Q Consensus       183 ~~g~~~p~f~~~~~  196 (434)
                      |+|.|||+|++..+
T Consensus       144 ~~g~flp~~~~~~~  157 (163)
T d1t47a1         144 YDGPYLPGYVAAAP  157 (163)
T ss_dssp             ECSSSSTTCEECCC
T ss_pred             CCCccCCCCCcCCC
Confidence            78899999988754

>d1sqda1 d.32.1.3 (A:14-180) 4-hydroxyphenylpyruvate dioxygenase, HppD {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 4-hydroxyphenylpyruvate dioxygenase, HppD
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.90  E-value=6.7e-23  Score=181.92  Aligned_cols=158  Identities=70%  Similarity=1.175  Sum_probs=130.2

Q ss_pred             cCCCCCCCCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccC
Q 013898           21 QNPKSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAG  100 (434)
Q Consensus        21 ~~~~~~~~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~  100 (434)
                      .||.+.++.+.++|||+|+|+|++++++||+++|||+++.+...+.+.....+..++++++.++++.+........-.-.
T Consensus         1 ~~p~~~~~~i~~~dHv~i~V~Dle~a~~fY~~~LGf~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~   80 (167)
T d1sqda1           1 KNPKSDKFKVKRFHHIEFWCGDATNVARRFSWGLGMRFSAKSDLSTGNMVHASYLLTSGDLRFLFTAPYSPSLSAGEIKP   80 (167)
T ss_dssp             CCCCCCSSCEEEEEEEEEECSCHHHHHHHHHHHHTCEEEEEESGGGTCSSEEEEEEEETTEEEEEEEECCGGGTTTCCGG
T ss_pred             CCCCCCCCCCceEeEEEEEeCCHHHHHHHHHHHhCCeEEEEeeccCCCeeEEEEEeeCCCeeEEEecccccccccccccc
Confidence            48899999999999999999999999999999999999998776665556778889999999999875432110000000


Q ss_pred             CCCCCCCCCChhHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEeec
Q 013898          101 NSSASLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSY  178 (434)
Q Consensus       101 ~~~~~~~~~~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd~  178 (434)
                      ......+..+.+.+++|++.|+.|++||||+|+|+++++++++++|++++.+|....++.+++.|+++|+++|+||++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~G~~Hiaf~VdDi~aa~~~l~~~G~~~~~~P~~~~~~~~~a~I~~~gd~~~~~v~r  158 (167)
T d1sqda1          81 TTTASIPSFDHGSCRSFFSSHGLGVRAVAIEVEDAESAFSISVANGAIPSSPPIVLNEAVTIAEVKLYGDVVLRYVSY  158 (167)
T ss_dssp             GCCCSSTTCCHHHHHHHHHHHCSEEEEEEEEESCHHHHHHHHHHTTCCEEEEEEEETTTEEEEEEEEETTEEEEEEEE
T ss_pred             ccccccccCCcchHHHhhhccCCCceEEEEEeCCHHHHHHHHHHCCCEEecCCeecCCCEEEEEEEccCCcEEEEEec
Confidence            011123344567889999999999999999999999999999999999999998887889999999999999999997

>d1cjxa1 d.32.1.3 (A:4-153) 4-hydroxyphenylpyruvate dioxygenase, HppD {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 4-hydroxyphenylpyruvate dioxygenase, HppD
species: Pseudomonas fluorescens [TaxId: 294]

Probab=99.89  E-value=1.5e-23  Score=183.84  Aligned_cols=142  Identities=20%  Similarity=0.264  Sum_probs=119.7

Q ss_pred             cCCCCCCCCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccC
Q 013898           21 QNPKSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAG  100 (434)
Q Consensus        21 ~~~~~~~~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~  100 (434)
                      .||+    .+.+||||+|+|+|++++.+||+ .|||+.+++..      ...+.++++|+++++++.+.           
T Consensus         2 ~np~----g~~Gidhv~fav~d~~~~~~~~~-~lGF~~~~~~~------~~~~~l~~~G~i~ll~~~~~-----------   59 (150)
T d1cjxa1           2 ENPM----GLMGFEFIEFASPTPGTLEPIFE-IMGFTKVATHR------SKNVHLYRQGEINLILNNEP-----------   59 (150)
T ss_dssp             CCTT----CEEEEEEEEEECSSTTSSHHHHH-HTTCEEEEEES------SSSEEEEEETTEEEEEECCS-----------
T ss_pred             CCCC----ccCCEEEEEEecCCHHHHHHHHH-HhCCEEEeccc------ceEEEEEecCcEEEEecCCC-----------
Confidence            3666    59999999999999999999997 59999999864      24688999999999998642           


Q ss_pred             CCCCCCCCCChhHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEeeccC
Q 013898          101 NSSASLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSYKD  180 (434)
Q Consensus       101 ~~~~~~~~~~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd~~~  180 (434)
                                .+.+.+|+.+||+|++||||+|+|+++++++|+++|++++.+|... ++..+|+|+++||++++|+++.+
T Consensus        60 ----------~s~~~~~~~~hg~gv~hiaf~V~D~~~a~~~a~~~Ga~~i~~~~~~-g~~~~~~i~g~gg~~i~Fv~~~~  128 (150)
T d1cjxa1          60 ----------NSIASYFAAEHGPSVCGMAFRVKDSQKAYNRALELGAQPIHIDTGP-MELNLPAIKGIGGAPLYLIDRFG  128 (150)
T ss_dssp             ----------SSHHHHHHHHHSSEEEEEEEEESCHHHHHHHHHHTTCCBCCCCCCT-TCBCCCEEECGGGCEEEEECCCS
T ss_pred             ----------CCHhHhHHhhCCCceEEEEEEeCCHHHHHHHHHHCCCEEcccCCCC-CceeeeEEEcCCCCEEEEECcCC
Confidence                      2567899999999999999999999999999999999999887654 67889999999999999999633


Q ss_pred             cCCCCCCCCCCccCCC
Q 013898          181 KANHLDFLPGFEPTDE  196 (434)
Q Consensus       181 ~~~~g~~~p~f~~~~~  196 (434)
                      .. ...|.++|.+.+.
T Consensus       129 ~~-~~~~~~dF~~~~~  143 (150)
T d1cjxa1         129 EG-SSIYDIDFVYLEG  143 (150)
T ss_dssp             SS-CCHHHHHEEECTT
T ss_pred             CC-CceeccCceECCC
Confidence            21 2247778877653

>d1sqia1 d.32.1.3 (A:8-156) 4-hydroxyphenylpyruvate dioxygenase, HppD {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 4-hydroxyphenylpyruvate dioxygenase, HppD
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.8e-22  Score=175.68  Aligned_cols=145  Identities=28%  Similarity=0.417  Sum_probs=124.9

Q ss_pred             CCCCCCCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCC
Q 013898           23 PKSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNS  102 (434)
Q Consensus        23 ~~~~~~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~  102 (434)
                      |+++...+.+||||+|+|+|++++++||+++|||+++.+...+.+.+.....+++.|+..++|+++..+.          
T Consensus         2 ~~p~~~~~~~~dHi~i~V~Dl~~a~~fY~~~lGf~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------   71 (149)
T d1sqia1           2 PKPERGRFLHFHSVTFWVGNAKQAASFYCNKMGFEPLAYKGLETGSREVVSHVIKQGKIVFVLCSALNPW----------   71 (149)
T ss_dssp             CCCSSCEEEEEEEEEEECSCHHHHHHHHHHHHCCEEEEEESGGGTCCSEEEEEEEETTEEEEEEEESSTT----------
T ss_pred             CCCCCCceeeEeEEEEEcCCHHHHHHHHhhccceEEEEEecccCCceEEEEEEecCCcEEEEEEeccCCC----------
Confidence            6677888999999999999999999999999999999887766666667788899999999998865432          


Q ss_pred             CCCCCCCChhHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccC---ceEEEEEEecCCeEEEEeecc
Q 013898          103 SASLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDN---LAVIAEVQLYGDVVLRYVSYK  179 (434)
Q Consensus       103 ~~~~~~~~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~---~~~~~~i~~~Gg~~~~fvd~~  179 (434)
                              .+.+.+++..||.|++||||+|+|+++++++++++|++++.+|....+   .+.++.|++||++.|+|+++ 
T Consensus        72 --------~~~~~~~~~~~g~G~~hiaf~V~di~~~~~~l~~~G~~~~~~P~~~~d~~G~v~~a~i~~~g~~~~~lier-  142 (149)
T d1sqia1          72 --------NKEMGDHLVKHGDGVKDIAFEVEDCEHIVQKARERGAKIVREPWVEEDKFGKVKFAVLQTYGDTTHTLVEK-  142 (149)
T ss_dssp             --------CHHHHHHHHHHCSEEEEEEEEEECHHHHHHHHHHHTCCEEEEEEEEEETTEEEEEEEEECSTTCEEEEEEE-
T ss_pred             --------CchhhhhhhhCCCeEEEEEEEeccHHHHHHHHHHCCCEEccCCeEEECCCCeEEEEEEECCCCCEEEEEEe-
Confidence                    256789999999999999999999999999999999999998876433   36788999999999999997 


Q ss_pred             CcCCCCCC
Q 013898          180 DKANHLDF  187 (434)
Q Consensus       180 ~~~~~g~~  187 (434)
                       ..|.|.|
T Consensus       143 -~~~~g~f  149 (149)
T d1sqia1         143 -INYTGRF  149 (149)
T ss_dssp             -ESCCSSS
T ss_pred             -CCCcCCC
Confidence             4576654

>d1sqia1 d.32.1.3 (A:8-156) 4-hydroxyphenylpyruvate dioxygenase, HppD {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 4-hydroxyphenylpyruvate dioxygenase, HppD
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.1e-18  Score=151.33  Aligned_cols=139  Identities=17%  Similarity=0.206  Sum_probs=107.8

Q ss_pred             cceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHH
Q 013898          204 YGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYL  283 (434)
Q Consensus       204 ~~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl  283 (434)
                      ..+.++|||+++|+|+++|++||+++|||++......+..   ...+....+..  +...+.|+++..  ...+.+..++
T Consensus         7 ~~~~~~dHi~i~V~Dl~~a~~fY~~~lGf~~~~~~~~~~~---~~~~~~~~~~~--~~~~~~l~~~~~--~~~~~~~~~~   79 (149)
T d1sqia1           7 GRFLHFHSVTFWVGNAKQAASFYCNKMGFEPLAYKGLETG---SREVVSHVIKQ--GKIVFVLCSALN--PWNKEMGDHL   79 (149)
T ss_dssp             CEEEEEEEEEEECSCHHHHHHHHHHHHCCEEEEEESGGGT---CCSEEEEEEEE--TTEEEEEEEESS--TTCHHHHHHH
T ss_pred             CceeeEeEEEEEcCCHHHHHHHHhhccceEEEEEecccCC---ceEEEEEEecC--CcEEEEEEeccC--CCCchhhhhh
Confidence            4689999999999999999999999999998876542221   22244444543  456777777653  3567888998


Q ss_pred             hhcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEE
Q 013898          284 EHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLL  363 (434)
Q Consensus       284 ~~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~ll  363 (434)
                      ..+ +.|++||||.|+||++++++|+++    |++++..| ..+                            .|+.|.+.
T Consensus        80 ~~~-g~G~~hiaf~V~di~~~~~~l~~~----G~~~~~~P-~~~----------------------------~d~~G~v~  125 (149)
T d1sqia1          80 VKH-GDGVKDIAFEVEDCEHIVQKARER----GAKIVREP-WVE----------------------------EDKFGKVK  125 (149)
T ss_dssp             HHH-CSEEEEEEEEEECHHHHHHHHHHH----TCCEEEEE-EEE----------------------------EETTEEEE
T ss_pred             hhC-CCeEEEEEEEeccHHHHHHHHHHC----CCEEccCC-eEE----------------------------ECCCCeEE
Confidence            874 889999999999999999999999    99999754 332                            24567777


Q ss_pred             EEEccccCCCCCeEEEEEEeecc
Q 013898          364 QIFTKPVGDRPTIFIEIIQRVGC  386 (434)
Q Consensus       364 qifT~~~~~r~~~FfEiIqR~g~  386 (434)
                      ..|-++..+   ..+|||||+|.
T Consensus       126 ~a~i~~~g~---~~~~lier~~~  145 (149)
T d1sqia1         126 FAVLQTYGD---TTHTLVEKINY  145 (149)
T ss_dssp             EEEEECSTT---CEEEEEEEESC
T ss_pred             EEEEECCCC---CEEEEEEeCCC
Confidence            777787544   89999999986

>d1sqda1 d.32.1.3 (A:14-180) 4-hydroxyphenylpyruvate dioxygenase, HppD {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 4-hydroxyphenylpyruvate dioxygenase, HppD
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.69  E-value=2.2e-16  Score=139.27  Aligned_cols=113  Identities=12%  Similarity=0.086  Sum_probs=82.6

Q ss_pred             ccceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecc--------------
Q 013898          203 DYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNE--------------  268 (434)
Q Consensus       203 ~~~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e--------------  268 (434)
                      +..++++|||+++|+|++++++||+++|||+.......+..   .....+..+..  +...+.++.              
T Consensus         7 ~~~i~~~dHv~i~V~Dle~a~~fY~~~LGf~~~~~~~~~~~---~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~   81 (167)
T d1sqda1           7 KFKVKRFHHIEFWCGDATNVARRFSWGLGMRFSAKSDLSTG---NMVHASYLLTS--GDLRFLFTAPYSPSLSAGEIKPT   81 (167)
T ss_dssp             SSCEEEEEEEEEECSCHHHHHHHHHHHHTCEEEEEESGGGT---CSSEEEEEEEE--TTEEEEEEEECCGGGTTTCCGGG
T ss_pred             CCCCceEeEEEEEeCCHHHHHHHHHHHhCCeEEEEeeccCC---CeeEEEEEeeC--CCeeEEEeccccccccccccccc
Confidence            46799999999999999999999999999998876543221   11223333332  233333321              


Q ss_pred             --cCCCCCCCchHHHHHhhcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCch
Q 013898          269 --PVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPT  326 (434)
Q Consensus       269 --~~~g~~~~s~i~~fl~~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~  326 (434)
                        +.....+.+++..|++.+ +.|++||||+|+||++++++|+++    |++++.. |..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~-~~G~~Hiaf~VdDi~aa~~~l~~~----G~~~~~~-P~~  135 (167)
T d1sqda1          82 TTASIPSFDHGSCRSFFSSH-GLGVRAVAIEVEDAESAFSISVAN----GAIPSSP-PIV  135 (167)
T ss_dssp             CCCSSTTCCHHHHHHHHHHH-CSEEEEEEEEESCHHHHHHHHHHT----TCCEEEE-EEE
T ss_pred             cccccccCCcchHHHhhhcc-CCCceEEEEEeCCHHHHHHHHHHC----CCEEecC-Cee
Confidence              111123567889999985 899999999999999999999999    9999975 444

>d1t47a1 d.32.1.3 (A:16-178) 4-hydroxyphenylpyruvate dioxygenase, HppD {Streptomyces avermitilis [TaxId: 33903]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 4-hydroxyphenylpyruvate dioxygenase, HppD
species: Streptomyces avermitilis [TaxId: 33903]

Probab=99.69  E-value=1.6e-16  Score=139.68  Aligned_cols=141  Identities=18%  Similarity=0.222  Sum_probs=103.4

Q ss_pred             cceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCC-CchHHHH
Q 013898          204 YGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKR-KSQIQTY  282 (434)
Q Consensus       204 ~~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~-~s~i~~f  282 (434)
                      .++++||||+++|+|++++++||+++|||++......+.   ...+..+.++.+  +.+.+.|+++...... ...+..+
T Consensus         3 ~~i~~idHv~i~V~D~~~a~~fY~~~lGf~~v~~~~~~~---~~~~~~~~~l~~--~~~~i~l~~~~~~~~~~~~~~~~~   77 (163)
T d1t47a1           3 FPVKGMDAVVFAVGNAKQAAHYYSTAFGMQLVAYSGPEN---GSRETASYVLTN--GSARFVLTSVIKPATPWGHFLADH   77 (163)
T ss_dssp             SCCCEEEEEEEECSCHHHHHHHHHHTSCCEEEEEESGGG---TCCSEEEEEEEE--TTEEEEEEEESSCCSHHHHHHHHH
T ss_pred             CCCceEeEEEEEeCCHHHHHHHHHHHhCCeEEeeecccc---cceeEEEEEEec--CCEEEEEeccCCCCCccccccchh
Confidence            358999999999999999999999999999887654222   223355556654  5678888877531111 1234556


Q ss_pred             HhhcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceE
Q 013898          283 LEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTL  362 (434)
Q Consensus       283 l~~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~l  362 (434)
                      +.. +|.|++||||.|+||++++++|+++    |++++..| ..+                            .|+.|.+
T Consensus        78 ~~~-~g~G~~hiaf~VdDid~a~~~l~~~----Ga~~~~~P-~~~----------------------------~d~~G~v  123 (163)
T d1t47a1          78 VAE-HGDGVVDLAIEVPDARAAHAYAIEH----GARSVAEP-YEL----------------------------KDEHGTV  123 (163)
T ss_dssp             HHH-HCSEEEEEEEECSCHHHHHHHHHHT----TCCEEEEE-EEE----------------------------EETTEEE
T ss_pred             hhc-CCCceEEEEEeeCCHHHHHHHHHHC----CCeEEecC-cce----------------------------eCCCCEE
Confidence            665 4789999999999999999999999    99999754 331                            2345666


Q ss_pred             EEEEccccCCCCCeEEEEEEeecc
Q 013898          363 LQIFTKPVGDRPTIFIEIIQRVGC  386 (434)
Q Consensus       363 lqifT~~~~~r~~~FfEiIqR~g~  386 (434)
                      ...|-+...+   .-++||||.+.
T Consensus       124 ~~a~I~~~g~---~~~~lier~~~  144 (163)
T d1t47a1         124 VLAAIATYGK---TRHTLVDRTGY  144 (163)
T ss_dssp             EEEEEECSTT---CEEEEEEEEEE
T ss_pred             EEEEEecCCC---ceEEEEeccCC
Confidence            6666666433   78999999985

>d1sp8a1 d.32.1.3 (A:36-207) 4-hydroxyphenylpyruvate dioxygenase, HppD {Corn (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 4-hydroxyphenylpyruvate dioxygenase, HppD
species: Corn (Zea mays) [TaxId: 4577]

Probab=99.59  E-value=6e-15  Score=130.85  Aligned_cols=111  Identities=15%  Similarity=0.088  Sum_probs=81.5

Q ss_pred             ccceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCC----------C
Q 013898          203 DYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVF----------G  272 (434)
Q Consensus       203 ~~~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~----------g  272 (434)
                      ..+++++|||++.|.|++++++||+++|||+..+........   ....+..+.+  +.+.+.++.+..          .
T Consensus         8 ~~~i~~~~Hi~i~V~D~e~a~~FY~~~LGf~~v~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~   82 (172)
T d1sp8a1           8 RFHTLAFHHVELWCADAASAAGRFSFGLGAPLAARSDLSTGN---SAHASLLLRS--GSLSFLFTAPYAHGADAATAALP   82 (172)
T ss_dssp             SSCEEEEEEEEEECSCHHHHHHHHHHHHTCCEEEEESGGGTC---CSEEEEEEEE--TTEEEEEEEECCSSCCGGGCSST
T ss_pred             cCCcCEEEEEEEEeCCHHHHHHHHHHhhCceEEEEecccccc---eeEEEEEecc--CCeeeEEeeccCCCchhhhcccc
Confidence            357999999999999999999999999999998765422211   1123333443  234443322110          1


Q ss_pred             CCCCchHHHHHhhcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCC
Q 013898          273 TKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSP  323 (434)
Q Consensus       273 ~~~~s~i~~fl~~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~p  323 (434)
                      ....+++..++..+ |.|++||||.|+||++++++|+++    |++++..|
T Consensus        83 ~~~~~~~~~~~~~~-g~Gi~Hiaf~VdDi~aa~~~l~~~----Ga~~~~~P  128 (172)
T d1sp8a1          83 SFSAAAARRFAADH-GLAVRAVALRVADAEDAFRASVAA----GARPAFGP  128 (172)
T ss_dssp             TCCHHHHHHHHHHH-SSEEEEEEEEESCHHHHHHHHHTT----TCCEEEEE
T ss_pred             cCCcchhhhhhhhc-CCceEEEEEeeCcHHHHHHHHHHC----cCEeccCC
Confidence            13456888888885 899999999999999999999999    99998754

>d1jc4a_ d.32.1.4 (A:) Methylmalonyl-CoA epimerase {Propionibacterium shermanii [TaxId: 1752]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Methylmalonyl-CoA epimerase
domain: Methylmalonyl-CoA epimerase
species: Propionibacterium shermanii [TaxId: 1752]

Probab=99.57  E-value=1e-14  Score=123.79  Aligned_cols=107  Identities=23%  Similarity=0.400  Sum_probs=80.3

Q ss_pred             ceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEE----cCCCceEEEecccCCCCCCCchHH
Q 013898          205 GIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLA----NNDEMVLLPMNEPVFGTKRKSQIQ  280 (434)
Q Consensus       205 ~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~----~~~g~v~i~L~e~~~g~~~~s~i~  280 (434)
                      .+.+||||+++|+|++++++||+++|||+..+.......     +.......    ...+..++++.++..   ..+...
T Consensus         4 m~~~i~Hi~i~v~Dl~~a~~fY~~~lG~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~el~~~~~---~~~~~~   75 (145)
T d1jc4a_           4 LFICIDHVAYACPDADEASKYYQETFGWHELHREENPEQ-----GVVEIMMAPAAKLTEHMTQVQVMAPLN---DESTVA   75 (145)
T ss_dssp             CCSEEEEEEEECSCHHHHHHHHHHHHCCEEEEEEEETTT-----TEEEEEEESSSSCCTTCCEEEEEEESS---TTSHHH
T ss_pred             cceEEeEEEEEeCCHHHHHHHHHhhccCceeeeeeeccc-----ceEEEeeeceeccccccchhhhhhhhc---ccCccc
Confidence            589999999999999999999999999998876542221     12222211    234678888888753   344444


Q ss_pred             HHHh-hcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCC
Q 013898          281 TYLE-HNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSP  323 (434)
Q Consensus       281 ~fl~-~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~p  323 (434)
                      .+.. ..++.|++||||.|+|+++++++|+++    |++++..+
T Consensus        76 ~~~~~~~~~~g~~Hia~~v~di~~~~~~l~~~----Gv~~~~~~  115 (145)
T d1jc4a_          76 KWLAKHNGRAGLHHMAWRVDDIDAVSATLRER----GVQLLYDE  115 (145)
T ss_dssp             HHHHHTTTCCEEEEEEEECSCHHHHHHHHHHH----TCCBSCSS
T ss_pred             ccccccCCCCcceEEEEecchHHHHHHHHHHC----CCEEeCCC
Confidence            4444 445678999999999999999999999    99998654

>d1ss4a_ d.32.1.6 (A:) Hypothetical protein BC1747 {Bacillus cereus (strain ATCC 14579 / DSM 31) [TaxId: 226900]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Hypothetical protein BC1747
domain: Hypothetical protein BC1747
species: Bacillus cereus (strain ATCC 14579 / DSM 31) [TaxId: 226900]

Probab=99.52  E-value=4.5e-14  Score=120.55  Aligned_cols=112  Identities=14%  Similarity=0.178  Sum_probs=76.0

Q ss_pred             cceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccC------cccccCceEEEEEcCCCceEEEecccCCCCCCCc
Q 013898          204 YGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDV------GTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKS  277 (434)
Q Consensus       204 ~~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~------~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s  277 (434)
                      ..+++|+||+|+|+|++++++||++ |||+..++......      +..........+..+++...+.|.+....   .+
T Consensus         5 ~~~~ri~Hv~i~v~Dle~s~~FY~~-LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~---~~   80 (149)
T d1ss4a_           5 NKLLRMDNVSIVVESLDNAISFFEE-IGLNLEGRANVEGEWAGRVTGLGSQCVEIAMMVTPDGHSRIELSRFLTP---PT   80 (149)
T ss_dssp             CCEEEEEEEEEECSCHHHHHHHHHH-HTCEEEEEEEECSHHHHHHHSCCSCEEEEEEEECTTSSCEEEEEEEEES---CC
T ss_pred             CCCCEEeEEEEEeCCHHHHHHHHHH-cCCcEeeeeccceeeeeeeeccCCCceeEEEEeecccceEEEEEeeccc---cC
Confidence            3689999999999999999999998 99998876532111      01112234445556666666666543210   10


Q ss_pred             hHHHHHhhcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCC
Q 013898          278 QIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSP  323 (434)
Q Consensus       278 ~i~~fl~~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~p  323 (434)
                      ............|++|+||.|+|+++++++|+++    |++++..|
T Consensus        81 ~~~~~~~~~~~~g~~hi~~~v~d~~~~~~~l~~~----G~~~~~~~  122 (149)
T d1ss4a_          81 IADHRTAPVNALGYLRVMFTVEDIDEMVSRLTKH----GAELVGEV  122 (149)
T ss_dssp             CCBCTTCCSSSBEEEEEEEEESCHHHHHHHHHHT----TCEESSCC
T ss_pred             cccccccCCCCcceeEEEEeechhHHHHHHHHHC----CCeEccCC
Confidence            0011111224568999999999999999999999    99998754

>d1jc4a_ d.32.1.4 (A:) Methylmalonyl-CoA epimerase {Propionibacterium shermanii [TaxId: 1752]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Methylmalonyl-CoA epimerase
domain: Methylmalonyl-CoA epimerase
species: Propionibacterium shermanii [TaxId: 1752]

Probab=99.43  E-value=1.4e-12  Score=110.16  Aligned_cols=130  Identities=15%  Similarity=0.152  Sum_probs=86.4

Q ss_pred             CcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEE----EEEEeCCEEEEEEcCCCCCCCcccccCCCCC
Q 013898           29 RVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHAS----YLLRSGDLRFVFTAPYSPSISDAADAGNSSA  104 (434)
Q Consensus        29 ~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~----~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~  104 (434)
                      .+++|+||.|.|+|++++++||++.|||+.......+........    ..+..++..+.+.++..+.            
T Consensus         4 m~~~i~Hi~i~v~Dl~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~------------   71 (145)
T d1jc4a_           4 LFICIDHVAYACPDADEASKYYQETFGWHELHREENPEQGVVEIMMAPAAKLTEHMTQVQVMAPLNDE------------   71 (145)
T ss_dssp             CCSEEEEEEEECSCHHHHHHHHHHHHCCEEEEEEEETTTTEEEEEEESSSSCCTTCCEEEEEEESSTT------------
T ss_pred             cceEEeEEEEEeCCHHHHHHHHHhhccCceeeeeeecccceEEEeeeceeccccccchhhhhhhhccc------------
Confidence            489999999999999999999999999998876543332211111    1123577888888765432            


Q ss_pred             CCCCCChhHHhHHH-HhcC-CceeEEEEEecCHHHHHHHHHHcCCCCCCCC-ccccCceEEEEE--EecCCeEEEEee
Q 013898          105 SLPTFDHAACRSFA-ASHG-LAARSIAVEVEDADVAFNTSVAHGAKPSSPP-VILDNLAVIAEV--QLYGDVVLRYVS  177 (434)
Q Consensus       105 ~~~~~~~~~~~~~l-~~hG-~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p-~~~~~~~~~~~i--~~~Gg~~~~fvd  177 (434)
                             +....+. ..++ .|+.||||.|+|+++++++++++|++++.++ ....+...+..+  ++++|..++|++
T Consensus        72 -------~~~~~~~~~~~~~~g~~Hia~~v~di~~~~~~l~~~Gv~~~~~~~~~~~~g~~~~f~~p~dp~G~~iEl~e  142 (145)
T d1jc4a_          72 -------STVAKWLAKHNGRAGLHHMAWRVDDIDAVSATLRERGVQLLYDEPKLGTGGNRINFMHPKSGKGVLIELTQ  142 (145)
T ss_dssp             -------SHHHHHHHHTTTCCEEEEEEEECSCHHHHHHHHHHHTCCBSCSSCEECSSSCEEEEBCGGGGTTSCEEEEE
T ss_pred             -------CcccccccccCCCCcceEEEEecchHHHHHHHHHHCCCEEeCCCceECCCCCEEEEEeccCCCCeEEEEEE
Confidence                   1122222 3343 4899999999999999999999999987654 322222233333  334445555554

>d1sqia2 d.32.1.3 (A:157-366) 4-hydroxyphenylpyruvate dioxygenase, HppD {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 4-hydroxyphenylpyruvate dioxygenase, HppD
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.5e-13  Score=124.19  Aligned_cols=116  Identities=13%  Similarity=0.145  Sum_probs=87.9

Q ss_pred             CCCCCCcceEEEEEEEeCC--HHHHHHHHHHhcCCcEEEEec---CCCCceeEEEEEEEe--CCEEEEEEcCCCCCCCcc
Q 013898           24 KSDRFRVNRFHHVEFWCTD--ATNTARRFSWGLGMPIVAKSD---LSTGNTVHASYLLRS--GDLRFVFTAPYSPSISDA   96 (434)
Q Consensus        24 ~~~~~~i~~l~HI~~~V~d--a~~a~~fy~~~lGf~~v~~~~---~~~g~~~~~~~~l~~--G~i~~vl~~p~~~~~~~~   96 (434)
                      ..+...+.+||||.++|++  +++|+.||+++|||+......   ..+....+.+.++++  |.+.+.|++|....    
T Consensus        16 ~~p~~gl~~IDHv~~~Vp~~~ld~av~fY~~vfGf~~~~~~~~~~i~~~~~~l~s~~l~s~~~~i~~~lne~~~~~----   91 (210)
T d1sqia2          16 KLPSCNLEIIDHIVGNQPDQEMESASEWYLKNLQFHRFWSVDDTQVHTEYSSLRSIVVANYEESIKMPINEPAPGR----   91 (210)
T ss_dssp             GSCCCCEEEEEEEEEECCTTCHHHHHHHHHHHHCCEEECCC-----------CEEEEEECTTSCCEEEEEECC-------
T ss_pred             cCCCCCcceeCceEeccCchhHHHHHHHHHHHhCCEEEEEecccccCCceeEEEEEEEEecCccccccccccCCCC----
Confidence            3355679999999999998  999999999999999775432   112112245666776  67889999865321    


Q ss_pred             cccCCCCCCCCCCChhHHhHHHHhc-CCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccc
Q 013898           97 ADAGNSSASLPTFDHAACRSFAASH-GLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVIL  156 (434)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~l~~h-G~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~  156 (434)
                                   ..+++.+|++.| |+||.||||+|+|+.+++++++++|++.+..|...
T Consensus        92 -------------~~sqi~~fl~~~~G~GiQHIAf~t~DI~~av~~L~~~Gv~fL~~P~~Y  139 (210)
T d1sqia2          92 -------------KKSQIQEYVDYNGGAGVQHIALRTEDIITTIRHLRERGMEFLAVPSSY  139 (210)
T ss_dssp             ---------------CHHHHHHHHHTSSEEEEEEEEESCHHHHHHHHHHHTCCBCCCCHHH
T ss_pred             -------------cccHHHHHHhhcCCCCeeEEEEEcCCHHHHHHHHHHcCCCCCCCCcch
Confidence                         136789999877 67999999999999999999999999998877543

>d1cjxa1 d.32.1.3 (A:4-153) 4-hydroxyphenylpyruvate dioxygenase, HppD {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 4-hydroxyphenylpyruvate dioxygenase, HppD
species: Pseudomonas fluorescens [TaxId: 294]

Probab=99.40  E-value=5.5e-13  Score=115.72  Aligned_cols=99  Identities=14%  Similarity=0.148  Sum_probs=81.7

Q ss_pred             ccceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHH
Q 013898          203 DYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTY  282 (434)
Q Consensus       203 ~~~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~f  282 (434)
                      ++++.+||||+++|+|++++.+||++ |||+...+...         ..+.+++.  +.+.+.++.+     ..|.+.+|
T Consensus         4 p~g~~Gidhv~fav~d~~~~~~~~~~-lGF~~~~~~~~---------~~~~l~~~--G~i~ll~~~~-----~~s~~~~~   66 (150)
T d1cjxa1           4 PMGLMGFEFIEFASPTPGTLEPIFEI-MGFTKVATHRS---------KNVHLYRQ--GEINLILNNE-----PNSIASYF   66 (150)
T ss_dssp             TTCEEEEEEEEEECSSTTSSHHHHHH-TTCEEEEEESS---------SSEEEEEE--TTEEEEEECC-----SSSHHHHH
T ss_pred             CCccCCEEEEEEecCCHHHHHHHHHH-hCCEEEecccc---------eEEEEEec--CcEEEEecCC-----CCCHhHhH
Confidence            46799999999999999999999976 99998765321         22334443  5688888764     46899999


Q ss_pred             HhhcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCC
Q 013898          283 LEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSP  323 (434)
Q Consensus       283 l~~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~p  323 (434)
                      ++.| |+|++||||+|+|+.+++++++++    |++++..|
T Consensus        67 ~~~h-g~gv~hiaf~V~D~~~a~~~a~~~----Ga~~i~~~  102 (150)
T d1cjxa1          67 AAEH-GPSVCGMAFRVKDSQKAYNRALEL----GAQPIHID  102 (150)
T ss_dssp             HHHH-SSEEEEEEEEESCHHHHHHHHHHT----TCCBCCCC
T ss_pred             HhhC-CCceEEEEEEeCCHHHHHHHHHHC----CCEEcccC
Confidence            9985 899999999999999999999999    99999765

>d1sp8a2 d.32.1.3 (A:208-431) 4-hydroxyphenylpyruvate dioxygenase, HppD {Corn (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 4-hydroxyphenylpyruvate dioxygenase, HppD
species: Corn (Zea mays) [TaxId: 4577]

Probab=99.35  E-value=4.7e-12  Score=116.78  Aligned_cols=107  Identities=17%  Similarity=0.215  Sum_probs=82.3

Q ss_pred             CCCCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCC---CCceeEEEEEEEe--CCEEEEEEcCCCCCCCcccccC
Q 013898           26 DRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLS---TGNTVHASYLLRS--GDLRFVFTAPYSPSISDAADAG  100 (434)
Q Consensus        26 ~~~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~---~g~~~~~~~~l~~--G~i~~vl~~p~~~~~~~~~~~~  100 (434)
                      ..+.+.+||||.++|+|+++|++||+++|||+...+...+   +......+.++.+  |.+.+.++++..+..       
T Consensus         3 ~d~Gl~~IDHI~i~V~dld~a~~fY~~vLGf~~~~~~~~~~i~~~~~~l~s~v~~~~~g~v~~~l~E~~~~~~-------   75 (224)
T d1sp8a2           3 ADYGLSRFDHIVGNVPELAPAAAYFAGFTGFHEFAEFTTEDVGTAESGLNSMVLANNSENVLLPLNEPVHGTK-------   75 (224)
T ss_dssp             CCCSEEEEEEEEEECSCHHHHHHHHHHHHCCEEEEEEEC--------CEEEEEEECSSSCCEEEEEEECCCSS-------
T ss_pred             CCCCcCeeeeeEEeccCHHHHHHHHHHHhCCEEEEEeccccccccceeEEEEEEEcCCCccceeeeeecCCCC-------
Confidence            3457999999999999999999999999999987754321   1112244555554  678899998764421       


Q ss_pred             CCCCCCCCCChhHHhHHHHhcC-CceeEEEEEecCHHHHHHHHHHcCCC
Q 013898          101 NSSASLPTFDHAACRSFAASHG-LAARSIAVEVEDADVAFNTSVAHGAK  148 (434)
Q Consensus       101 ~~~~~~~~~~~~~~~~~l~~hG-~gv~~Iaf~V~Dvd~a~~ra~~~Ga~  148 (434)
                               ..+++.+|+++|+ .|++||||+|+|+.++++.++++|+.
T Consensus        76 ---------~~s~i~~FL~~~~g~GiqHIAf~vdDI~~av~~L~arGv~  115 (224)
T d1sp8a2          76 ---------RRSQIQTFLDHHGGPGVQHMALASDDVLRTLREMQARSAM  115 (224)
T ss_dssp             ---------SCCHHHHHHHHHTSSEEEEEEEEETTHHHHHHHHHTSGGG
T ss_pred             ---------CccHHHHHHHhccCCCceeEEEEeCCHHHHHHHHHhcccc
Confidence                     1367899999987 69999999999999999999988753

>d1lgta1 d.32.1.3 (A:2-132) 2,3-Dihydroxybiphenyl dioxygenase (DHBD, BPHC enzyme) {Burkholderia cepacia, formerly Pseudomonas cepacia [TaxId: 292]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 2,3-Dihydroxybiphenyl dioxygenase (DHBD, BPHC enzyme)
species: Burkholderia cepacia, formerly Pseudomonas cepacia [TaxId: 292]

Probab=99.35  E-value=4.1e-12  Score=106.98  Aligned_cols=116  Identities=12%  Similarity=0.149  Sum_probs=84.1

Q ss_pred             eeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhh
Q 013898          206 IRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEH  285 (434)
Q Consensus       206 l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~  285 (434)
                      +++|+||+++|+|++++.+||+++|||++....+    .       ..+++.......+.+.+.                
T Consensus         2 I~~l~hv~i~V~Dl~~s~~FY~~vLG~~~~~~~~----~-------~~~l~~~~~~~~l~l~~~----------------   54 (131)
T d1lgta1           2 IRSLGYMGFAVSDVAAWRSFLTQKLGLMEAGTTD----N-------GDLFRIDSRAWRIAVQQG----------------   54 (131)
T ss_dssp             EEEEEEEEEEESCHHHHHHHHHHTTCCEEEEEET----T-------EEEEESSSBSCSEEEEEC----------------
T ss_pred             cccccEEEEEeCCHHHHHHHHHHhhCCceeecCC----c-------ceEEeecCCceEEEEecC----------------
Confidence            7899999999999999999999999999876531    1       123444444445555443                


Q ss_pred             cCCCCceEEEEEeC---CHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceE
Q 013898          286 NEGAGVQHLALVSE---DIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTL  362 (434)
Q Consensus       286 ~~G~GvqHIAf~vd---DI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~l  362 (434)
                       ..++++|++|.|.   |++++.++|+++    |+++...| ...                ...-.....+|-+|++|..
T Consensus        55 -~~~~~~h~~f~v~~~~dl~~~~~~l~~~----g~~~~~~~-~~~----------------~~~~~~~~~~~f~DPdGn~  112 (131)
T d1lgta1          55 -EVDDLAFAGYEVADAAGLAQMADKLKQA----GIAVTTGD-ASL----------------ARRRGVTGLITFADPFGLP  112 (131)
T ss_dssp             -TTCEEEEEEEEESSHHHHHHHHHHHHHT----TCCCEECC-HHH----------------HHHHTCSEEEEEECTTSCE
T ss_pred             -CCCCceEEEEEEccHHHHHHHHHHHHHc----CCceEECC-ccc----------------cccCCceEEEEEECCCCCE
Confidence             2357999999995   567789999999    99998764 321                1111123457888999999


Q ss_pred             EEEEcccc
Q 013898          363 LQIFTKPV  370 (434)
Q Consensus       363 lqifT~~~  370 (434)
                      +++|..|-
T Consensus       113 iE~~~~~~  120 (131)
T d1lgta1         113 LEIYYGAS  120 (131)
T ss_dssp             EEEEECCC
T ss_pred             EEEEeCCC
Confidence            99997664

>d1cjxa2 d.32.1.3 (A:154-356) 4-hydroxyphenylpyruvate dioxygenase, HppD {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 4-hydroxyphenylpyruvate dioxygenase, HppD
species: Pseudomonas fluorescens [TaxId: 294]

Probab=99.33  E-value=2.8e-12  Score=116.66  Aligned_cols=107  Identities=12%  Similarity=0.086  Sum_probs=85.8

Q ss_pred             CcceEEEEEEEeC--CHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEe--CCEEEEEEcCCCCCCCcccccCCCCC
Q 013898           29 RVNRFHHVEFWCT--DATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRS--GDLRFVFTAPYSPSISDAADAGNSSA  104 (434)
Q Consensus        29 ~i~~l~HI~~~V~--da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~--G~i~~vl~~p~~~~~~~~~~~~~~~~  104 (434)
                      .+.+||||.++|+  ++++|+.||+++|||++..+...++......+.++.+  +.+.+.++.+....            
T Consensus         2 Gl~~IDHIa~~V~~~~l~~a~~FY~~vlGf~~~~~~di~~~~~~l~s~~~~~~~~~~~~~l~~~~~~~------------   69 (203)
T d1cjxa2           2 GLKVIDHLTHNVYRGRMVYWANFYEKLFNFREARYFDIKGEYTGLTSKAMSAPDGMIRIPLNEESSKG------------   69 (203)
T ss_dssp             SEEEEEEECEECCTTHHHHHHHHHHHHHCCEEEEEEEEECSSCEEEEEEEECTTSSCEEEEEEECTTC------------
T ss_pred             CCCeeCeeEeccChhhHHHHHHHHHHHhCCEEeEEEecCCCcceEEEEEeeccccccceecccCCCCC------------
Confidence            3789999999998  8999999999999999988765444333455666655  56777777654322            


Q ss_pred             CCCCCChhHHhHHHHhcC-CceeEEEEEecCHHHHHHHHHHcCCCCCCCC
Q 013898          105 SLPTFDHAACRSFAASHG-LAARSIAVEVEDADVAFNTSVAHGAKPSSPP  153 (434)
Q Consensus       105 ~~~~~~~~~~~~~l~~hG-~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p  153 (434)
                            .+++.+|+..|+ +|+.||||+|+|+.+++++++++|++.+..|
T Consensus        70 ------~sqi~~fl~~~~g~GiqHIAf~vdDI~aav~~L~~~Gv~fL~~p  113 (203)
T d1cjxa2          70 ------AGQIEEFLMQFNGEGIQHVAFLTDDLVKTWDALKKIGMRFMTAP  113 (203)
T ss_dssp             ------CSHHHHHHHHHTSSBCCEEEEEESCHHHHHHHHHHTTCCBCCCC
T ss_pred             ------ccHHHHHHHhcCCCCCceEEEEeCCHHHHHHHHHhcCCccccCc
Confidence                  257899999876 6999999999999999999999999988765

>d1sqda2 d.32.1.3 (A:181-410) 4-hydroxyphenylpyruvate dioxygenase, HppD {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 4-hydroxyphenylpyruvate dioxygenase, HppD
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.33  E-value=3.9e-12  Score=117.71  Aligned_cols=119  Identities=12%  Similarity=0.099  Sum_probs=86.8

Q ss_pred             eeccccccCCCCCCCCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCC---CceeEEEEEEEe--CCEEEEEEcC
Q 013898           14 GFKNFVRQNPKSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLST---GNTVHASYLLRS--GDLRFVFTAP   88 (434)
Q Consensus        14 ~~~~~~~~~~~~~~~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~---g~~~~~~~~l~~--G~i~~vl~~p   88 (434)
                      ||.........+....+.+||||.++|+|+++|.+||++.|||........++   ......+.++.+  |.+.+.+++|
T Consensus         4 Gf~~~~~~~~~~~~~gl~~IDHI~iaVpdld~a~~~y~~~lG~~~~~~~~~~di~~~~~~l~s~v~~s~~g~v~~~l~E~   83 (230)
T d1sqda2           4 GFERVEDASSFPLDYGIRRLDHAVGNVPELGPALTYVAGFTGFHQFAEFTADDVGTAESGLNSAVLASNDEMVLLPINEP   83 (230)
T ss_dssp             TCEECCTTTCCCCCSSEEEEEEEEEECSCHHHHHHHHHHHHCCEEEEEEC--------CCEEEEEEECTTSCSEEEEEEE
T ss_pred             CCEeCCccccCCCCCCcCccCcceecccCHHHHHHHHHHHcCCeeeEEecccccccceeeEeeccccCCCcccceeEEee
Confidence            45443333333345679999999999999999999999999999887654222   111244555554  7789999987


Q ss_pred             CCCCCCcccccCCCCCCCCCCChhHHhHHHHhc-CCceeEEEEEecCHHHHHHHHHHcCCC
Q 013898           89 YSPSISDAADAGNSSASLPTFDHAACRSFAASH-GLAARSIAVEVEDADVAFNTSVAHGAK  148 (434)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h-G~gv~~Iaf~V~Dvd~a~~ra~~~Ga~  148 (434)
                      ..+..                ..+++++|+++| |+|+.||||+|+|+.++++.++++|+.
T Consensus        84 ~~~~~----------------~~sqi~~FL~~~~G~GiQHIAf~tdDI~aav~~LrarG~~  128 (230)
T d1sqda2          84 VHGTK----------------RKSQIQTYLEHNEGAGLQHLALMSEDIFRTLREMRKRSSI  128 (230)
T ss_dssp             CCC-------------------CCHHHHHHHHHTSCEEEEEEEEESCHHHHHHHHHHHGGG
T ss_pred             cCCCC----------------CcchHHHHHhhccCCceeEEEEEeCCHHHHHHHHHHhhcc
Confidence            65421                126789999876 789999999999999999999998654

>d1ss4a_ d.32.1.6 (A:) Hypothetical protein BC1747 {Bacillus cereus (strain ATCC 14579 / DSM 31) [TaxId: 226900]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Hypothetical protein BC1747
domain: Hypothetical protein BC1747
species: Bacillus cereus (strain ATCC 14579 / DSM 31) [TaxId: 226900]

Probab=99.33  E-value=4.4e-12  Score=107.81  Aligned_cols=132  Identities=16%  Similarity=0.219  Sum_probs=90.7

Q ss_pred             CCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCC---------CceeEEEEEEEe--CCEEEEEEcCCCCCCCcc
Q 013898           28 FRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLST---------GNTVHASYLLRS--GDLRFVFTAPYSPSISDA   96 (434)
Q Consensus        28 ~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~---------g~~~~~~~~l~~--G~i~~vl~~p~~~~~~~~   96 (434)
                      ..+++++||.|.|+|++++.+||++ |||+++.+.....         .........+..  +...+.|........   
T Consensus         5 ~~~~ri~Hv~i~v~Dle~s~~FY~~-LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~---   80 (149)
T d1ss4a_           5 NKLLRMDNVSIVVESLDNAISFFEE-IGLNLEGRANVEGEWAGRVTGLGSQCVEIAMMVTPDGHSRIELSRFLTPPT---   80 (149)
T ss_dssp             CCEEEEEEEEEECSCHHHHHHHHHH-HTCEEEEEEEECSHHHHHHHSCCSCEEEEEEEECTTSSCEEEEEEEEESCC---
T ss_pred             CCCCEEeEEEEEeCCHHHHHHHHHH-cCCcEeeeeccceeeeeeeeccCCCceeEEEEeecccceEEEEEeeccccC---
Confidence            3589999999999999999999998 9999887642111         012234444544  345555543222110   


Q ss_pred             cccCCCCCCCCCCChhHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEe
Q 013898           97 ADAGNSSASLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYV  176 (434)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fv  176 (434)
                            ...         ......+..|+.|++|+|+|++++++++++.|++++.+|....+.....-++++.|..++|+
T Consensus        81 ------~~~---------~~~~~~~~~g~~hi~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~DPdG~~iEl~  145 (149)
T d1ss4a_          81 ------IAD---------HRTAPVNALGYLRVMFTVEDIDEMVSRLTKHGAELVGEVVQYENSYRLCYIRGVEGILIGLA  145 (149)
T ss_dssp             ------CCB---------CTTCCSSSBEEEEEEEEESCHHHHHHHHHHTTCEESSCCEEETTTEEEEEEECGGGCEEEEE
T ss_pred             ------ccc---------ccccCCCCcceeEEEEeechhHHHHHHHHHCCCeEccCCeECCCCeEEEEEECCCCCEEEEE
Confidence                  000         00011234589999999999999999999999998888876655666666788888888888


Q ss_pred             ec
Q 013898          177 SY  178 (434)
Q Consensus       177 d~  178 (434)
                      ++
T Consensus       146 e~  147 (149)
T d1ss4a_         146 EE  147 (149)
T ss_dssp             EE
T ss_pred             Ec
Confidence            74

>d1kw3b1 d.32.1.3 (B:1-132) 2,3-Dihydroxybiphenyl dioxygenase (DHBD, BPHC enzyme) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 2,3-Dihydroxybiphenyl dioxygenase (DHBD, BPHC enzyme)
species: Pseudomonas sp. [TaxId: 306]

Probab=99.30  E-value=9.2e-12  Score=104.99  Aligned_cols=118  Identities=16%  Similarity=0.212  Sum_probs=84.7

Q ss_pred             eeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhh
Q 013898          206 IRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEH  285 (434)
Q Consensus       206 l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~  285 (434)
                      +++|+||+++|+|++++.+||+++|||+......           ...++...+....+.+...                
T Consensus         2 i~~L~hv~i~v~Dl~~s~~FY~~vLG~~~~~~~~-----------~~~~l~~~~~~~~l~~~~~----------------   54 (132)
T d1kw3b1           2 IERLGYLGFAVKDVPAWDHFLTKSVGLMAAGSAG-----------DAALYRADQRAWRIAVQPG----------------   54 (132)
T ss_dssp             CCEEEEEEEEESCHHHHHHHHHHTTCCEEEEEET-----------TEEEEESSSBSCSEEEEEC----------------
T ss_pred             cccccEEEEEeCCHHHHHHHHHHHhCCceecccc-----------ceeeeeeeecceeeeeecc----------------
Confidence            6899999999999999999999999999876532           1123444333334444332                


Q ss_pred             cCCCCceEEEEEeC---CHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceE
Q 013898          286 NEGAGVQHLALVSE---DIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTL  362 (434)
Q Consensus       286 ~~G~GvqHIAf~vd---DI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~l  362 (434)
                       ...+++|++|.|.   |++++.++|+++    |+++...| ...-.   .|.             -...+|-+|++|..
T Consensus        55 -~~~~~~h~~f~v~~~~dl~~~~~~l~~~----g~~~~~~~-~~~~~---~~~-------------~~~~~~~~DPdGn~  112 (132)
T d1kw3b1          55 -ELDDLAYAGLEVDDAAALERMADKLRQA----GVAFTRGD-EALMQ---QRK-------------VMGLLCLQDPFGLP  112 (132)
T ss_dssp             -TTCEEEEEEEECSSHHHHHHHHHHHHHH----TCCCEECC-HHHHH---HHT-------------CSEEEEEECTTSCE
T ss_pred             -CCCCceEEEEEeccHHHHHHHHHHHHHc----CCCceecC-ccccc---cCC-------------cceEEEEECCCCCE
Confidence             2357999999995   578899999999    99998764 33211   111             12356889999999


Q ss_pred             EEEEccccCC
Q 013898          363 LQIFTKPVGD  372 (434)
Q Consensus       363 lqifT~~~~~  372 (434)
                      +++|..|...
T Consensus       113 iE~~~~~~~~  122 (132)
T d1kw3b1         113 LEIYYGPAEI  122 (132)
T ss_dssp             EEEEECCCBC
T ss_pred             EEEEECCCcc
Confidence            9999887653

>d1zswa2 d.32.1.10 (A:145-314) Hypothetical protein BC1024 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: BC1024-like
domain: Hypothetical protein BC1024
species: Bacillus cereus [TaxId: 1396]

Probab=99.30  E-value=3.8e-12  Score=112.27  Aligned_cols=124  Identities=16%  Similarity=0.142  Sum_probs=79.4

Q ss_pred             CcccceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHH
Q 013898          201 PLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQ  280 (434)
Q Consensus       201 ~~~~~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~  280 (434)
                      |.+..+++|+||++.|+|++++++||+++|||+.....+  +       .....+........+.+..+..   ..    
T Consensus         5 p~~~~I~Gl~HV~L~V~Dle~s~~FY~~vLG~~~~~~~~--~-------~~~~~~~~~~~~~~~~~~~~~~---~~----   68 (170)
T d1zswa2           5 PAKHQIQGMGSVELTVRRLDKMASTLTEIFGYTEVSRND--Q-------EAIFQSIKGEAFGEIVVKYLDG---PT----   68 (170)
T ss_dssp             CGGGSCCEEEEEEEEESCHHHHHHHHHHTTCCEEEEECS--S-------EEEEESSTTCSTTCEEEEECCS---SB----
T ss_pred             ChhHHhCCeeeEEEEeCCHHHHHHHHHHHhCCEEEeecC--c-------eEEEEeccCccceEEEeccccc---cc----
Confidence            345578999999999999999999999999999886532  1       1111111112122222222211   01    


Q ss_pred             HHHhhcCCCCceEEEEEeCC---HHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecC
Q 013898          281 TYLEHNEGAGVQHLALVSED---IFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRD  357 (434)
Q Consensus       281 ~fl~~~~G~GvqHIAf~vdD---I~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d  357 (434)
                         ...+..|++||||.|+|   +++..++|+++    |++....  ..       |..            . .=+|-+|
T Consensus        69 ---~~~~~~~l~HiAf~V~~~~~l~~~~~~l~~~----G~~~~~~--~~-------~~~------------~-~s~Yf~D  119 (170)
T d1zswa2          69 ---EKPGRGSIHHLAIRVKNDAELAYWEEQVKQR----GFHSSGI--ID-------RFY------------F-KSLYFRE  119 (170)
T ss_dssp             ---CBCCBTCEEEEEEEESSHHHHHHHHHHHHHT----TCCCCCC--EE-------CSS------------E-EEEEEEC
T ss_pred             ---cccCccccceEEEEeCChHHHHHHHHHHHhc----CCCcccc--cc-------CCC------------E-EEEEEEC
Confidence               11123469999999987   66777888887    9876432  21       111            1 1249999


Q ss_pred             CCceEEEEEccc
Q 013898          358 DQGTLLQIFTKP  369 (434)
Q Consensus       358 ~~g~llqifT~~  369 (434)
                      ++|.+++++|.+
T Consensus       120 PdG~~iEl~t~~  131 (170)
T d1zswa2         120 SNGILFEIATDG  131 (170)
T ss_dssp             TTCCEEEEEEEE
T ss_pred             CCCcEEEEEECC
Confidence            999999999964

>d1r9ca_ d.32.1.2 (A:) Fosfomycin resistance protein FosX {Mesorhizobium loti [TaxId: 381]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Antibiotic resistance proteins
domain: Fosfomycin resistance protein FosX
species: Mesorhizobium loti [TaxId: 381]

Probab=99.30  E-value=1.3e-11  Score=102.84  Aligned_cols=124  Identities=16%  Similarity=0.162  Sum_probs=84.7

Q ss_pred             eeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhh
Q 013898          206 IRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEH  285 (434)
Q Consensus       206 l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~  285 (434)
                      +.+|+||++.|+|++++++||+++|||+..+..+.....  .  .....+..  +...+.+.....              
T Consensus         2 i~~i~Hi~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~--~--~~~~~~~~--~~~~~~~~~~~~--------------   61 (130)
T d1r9ca_           2 IEGLSHMTFIVRDLERMTRILEGVFDAREVYASDTEQFS--L--SREKFFLI--GDIWVAIMQGEK--------------   61 (130)
T ss_dssp             EEEEEEEEEEESCHHHHHHHHHHHHCCEEEEEGGGSTTC--C--SCEEEEEE--TTEEEEEEECCC--------------
T ss_pred             CCcEeEEEEEeCCHHHHHHHHHHhcCCEEEEEcCCcccc--c--eeEEEEec--CCEEEeeccccc--------------
Confidence            678999999999999999999999999988765322111  1  11122222  234555544321              


Q ss_pred             cCCCCceEEEEEeC--CHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEE
Q 013898          286 NEGAGVQHLALVSE--DIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLL  363 (434)
Q Consensus       286 ~~G~GvqHIAf~vd--DI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~ll  363 (434)
                      ....+..|+||.++  |+++++++|+++    |+++...| ....                   -.....|-.|++|+++
T Consensus        62 ~~~~~~~~~~f~v~~~dv~~~~~~l~~~----gv~i~~~~-~~~~-------------------~~~~~~~~~DPdGn~i  117 (130)
T d1r9ca_          62 LAERSYNHIAFKIDDADFDRYAERVGKL----GLDMRPPR-PRVE-------------------GEGRSIYFYDDDNHMF  117 (130)
T ss_dssp             CSSCCSCEEEEECCGGGHHHHHHHHHHH----TCCBCCCC-C------------------------CCEEEEECTTSCEE
T ss_pred             ccccceeeeeecccHHHHHHHHHHHHHC----CCeEecCC-cccC-------------------CCEEEEEEECCCCCEE
Confidence            12456899999775  799999999999    99988643 2100                   0123457789999999


Q ss_pred             EEEccccCCC
Q 013898          364 QIFTKPVGDR  373 (434)
Q Consensus       364 qifT~~~~~r  373 (434)
                      ++||..+.+|
T Consensus       118 El~~~~~~~r  127 (130)
T d1r9ca_         118 ELHTGTLTER  127 (130)
T ss_dssp             EEECCCHHHH
T ss_pred             EEEECCHHHh
Confidence            9999886543

>d1t47a2 d.32.1.3 (A:179-377) 4-hydroxyphenylpyruvate dioxygenase, HppD {Streptomyces avermitilis [TaxId: 33903]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 4-hydroxyphenylpyruvate dioxygenase, HppD
species: Streptomyces avermitilis [TaxId: 33903]

Probab=99.27  E-value=7.7e-12  Score=113.17  Aligned_cols=111  Identities=12%  Similarity=0.071  Sum_probs=87.1

Q ss_pred             CcceEEEEEEEeC--CHHHHHHHHHHhcCCcEEEEecCCC---CceeEEEEEEEe--CCEEEEEEcCCCCCCCcccccCC
Q 013898           29 RVNRFHHVEFWCT--DATNTARRFSWGLGMPIVAKSDLST---GNTVHASYLLRS--GDLRFVFTAPYSPSISDAADAGN  101 (434)
Q Consensus        29 ~i~~l~HI~~~V~--da~~a~~fy~~~lGf~~v~~~~~~~---g~~~~~~~~l~~--G~i~~vl~~p~~~~~~~~~~~~~  101 (434)
                      .+.+||||.++|+  ++++|+.||+++|||+...+...++   ....+.+.++.+  +.+.+.+++|....         
T Consensus         3 ~f~~IDHia~avp~~~l~~av~fY~~vfGf~~~~~~~~~di~~~~~~l~s~~~~s~~~~v~l~lne~~~~~---------   73 (199)
T d1t47a2           3 TFQAIDHCVGNVELGRMNEWVGFYNKVMGFTNMKEFVGDDIATEYSALMSKVVADGTLKVKFPINEPALAK---------   73 (199)
T ss_dssp             SCCEEEEEEEECCTTCHHHHHHHHHHHHCCEECSCCBCHHHHTTTTSEEEEEEECTTSCSEEEEEEECCSS---------
T ss_pred             cceeeCceEeccChhhHHHHHHHHHHHhCCeEeeEecccccccceeEEEEeeccccccccceeecccCccc---------
Confidence            3789999999999  9999999999999999876532111   111255666665  56788888764322         


Q ss_pred             CCCCCCCCChhHHhHHHHhcC-CceeEEEEEecCHHHHHHHHHHcCCCCCCCCccc
Q 013898          102 SSASLPTFDHAACRSFAASHG-LAARSIAVEVEDADVAFNTSVAHGAKPSSPPVIL  156 (434)
Q Consensus       102 ~~~~~~~~~~~~~~~~l~~hG-~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~  156 (434)
                              ..+++++|+.+|+ +||.||||+|+|+.+++++++++|+..+..|...
T Consensus        74 --------~~s~i~~FL~~~~g~GiQHIAl~tdDI~~av~~L~~~G~~fL~~p~~Y  121 (199)
T d1t47a2          74 --------KKSQIDEYLEFYGGAGVQHIALNTGDIVETVRTMRAAGVQFLDTPDSY  121 (199)
T ss_dssp             --------SCCHHHHHHHHHTSCEEEEEEEECSCHHHHHHHHHHTTCCBCCCCGGG
T ss_pred             --------cccchhhhhhhcCCCcceEEEEEcCCHHHHHHHHHHcCCCCCCCChHH
Confidence                    1367899999998 5999999999999999999999999998877654

>d2i7ra1 d.32.1.2 (A:1-115) Hypotheical protein SP0731 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Antibiotic resistance proteins
domain: Hypotheical protein SP0731
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.23  E-value=2.9e-11  Score=99.23  Aligned_cols=104  Identities=13%  Similarity=0.122  Sum_probs=77.6

Q ss_pred             ceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCC
Q 013898           31 NRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFD  110 (434)
Q Consensus        31 ~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~  110 (434)
                      |.|+||.|+|+|.+++++||++.||+++....+        ....+..|+..|.|.......                  
T Consensus         1 m~l~~i~i~V~di~~a~~FYe~~lg~~~~~~~~--------~~~~~~~g~~~l~l~~~~~~~------------------   54 (115)
T d2i7ra1           1 MNLNQLDIIVSNVPQVCADLEHILDKKADYAND--------GFAQFTIGSHCLMLSQNHLVP------------------   54 (115)
T ss_dssp             CEEEEEEEECSCHHHHHHHHHHHHTSCCSEEET--------TEEEEEETTEEEEEESSCSSS------------------
T ss_pred             CcceEEEEEECCHHHHHHHHHHhhCCceeeecC--------CeEEEEEcCceeeeeecccCC------------------
Confidence            579999999999999999999999999876643        134577799999887632110                  


Q ss_pred             hhHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEeec
Q 013898          111 HAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSY  178 (434)
Q Consensus       111 ~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd~  178 (434)
                             ...++.|+ +++|+|+|+++++++++++|+++..+|...          +||...++|.||
T Consensus        55 -------~~~~~~~~-~~~f~v~D~d~~~~~l~~~G~~i~~~~~~~----------~~g~~~~~~~DP  104 (115)
T d2i7ra1          55 -------LENFQSGI-IIHIEVEDVDQNYKRLNELGIKVLHGPTVT----------DWGTESLLVQGP  104 (115)
T ss_dssp             -------CCCCCSCE-EEEEECSCHHHHHHHHHHHTCCEEEEEEEC----------TTSCEEEEEECG
T ss_pred             -------CCCCCcce-EEEEEECCHHHHHHHHHhhccccccceEEe----------eCCeEEEEEECC
Confidence                   00133344 799999999999999999999887776554          345555566653

>d1zswa1 d.32.1.10 (A:1-144) Hypothetical protein BC1024 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: BC1024-like
domain: Hypothetical protein BC1024
species: Bacillus cereus [TaxId: 1396]

Probab=99.22  E-value=2.2e-11  Score=103.30  Aligned_cols=124  Identities=13%  Similarity=0.130  Sum_probs=79.5

Q ss_pred             ceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCC--CceEEEecccCCCCCCCchHHHH
Q 013898          205 GIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANND--EMVLLPMNEPVFGTKRKSQIQTY  282 (434)
Q Consensus       205 ~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~--g~v~i~L~e~~~g~~~~s~i~~f  282 (434)
                      .+++|+||++.|+|++++++||+++|||++.......+.    .+..........  ....+.+......  .+      
T Consensus         3 ~i~gl~Hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~------   70 (144)
T d1zswa1           3 EIKGHHHISMVTKNANENNHFYKNVLGLRRVKMTVNQDD----PSMYHLFYGDKTGSPGTELSFFEIPLV--GR------   70 (144)
T ss_dssp             CCCSEEEEEEEESCHHHHHHHHHTTTCCEEEEEEEETTE----EEEEEEEEESTTCCTTSEEEEEECTTC--CB------
T ss_pred             cccceeeEEEEeCCHHHHHHHHHHHhCCeeEeeeccccC----CceeEEEecccccceeeEEeecccccc--cC------
Confidence            478999999999999999999999999998876432211    112222222221  2233444433210  11      


Q ss_pred             HhhcCC-CCceEEEEEeCC---HHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCC
Q 013898          283 LEHNEG-AGVQHLALVSED---IFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDD  358 (434)
Q Consensus       283 l~~~~G-~GvqHIAf~vdD---I~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~  358 (434)
                        ...| .|++|+||.|+|   +.+..++|++.    |+.+.. | .++.       +             ...+|-+|+
T Consensus        71 --~~~~~~~~~Hiaf~v~~~~~l~~~~~~l~~~----gv~~~~-~-~~~~-------~-------------~~~~yf~DP  122 (144)
T d1zswa1          71 --TYRGTNAITRIGLLVPSEDSLHYWKERFEKF----DVKHSE-M-TTYA-------N-------------RPALQFEDA  122 (144)
T ss_dssp             --CBCCBSEEEEEEEEESCHHHHHHHHHHHHHT----TCEECC-S-EEET-------T-------------EEEEEEECT
T ss_pred             --CccCCCceeEEEEecCCchhHHHHhhhhhcc----ceeeeC-c-cccC-------C-------------eEEEEEECC
Confidence              1123 459999999998   67788999999    998753 3 3321       1             124577888


Q ss_pred             CceEEEEEcc
Q 013898          359 QGTLLQIFTK  368 (434)
Q Consensus       359 ~g~llqifT~  368 (434)
                      +|..++++..
T Consensus       123 dG~~iEl~~~  132 (144)
T d1zswa1         123 EGLRLVLLVS  132 (144)
T ss_dssp             TCCEEEEEEC
T ss_pred             CCCEEEEEEe
Confidence            8877776554

>d1xqaa_ d.32.1.2 (A:) Hypothetical protein BC3580 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Antibiotic resistance proteins
domain: Hypothetical protein BC3580
species: Bacillus cereus [TaxId: 1396]

Probab=99.19  E-value=4e-11  Score=97.09  Aligned_cols=108  Identities=10%  Similarity=0.180  Sum_probs=77.2

Q ss_pred             eeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhc
Q 013898          207 RRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHN  286 (434)
Q Consensus       207 ~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~  286 (434)
                      ++|+||++.|+|++++.+||+++|||+......  +         ..++..+++...+.+.....    .          
T Consensus         2 m~i~Hi~l~v~Dl~~a~~FY~~~lG~~~~~~~~--~---------~~~~~~~~~~~~~~~~~~~~----~----------   56 (113)
T d1xqaa_           2 MGIKHLNLTVADVVAAREFLEKYFGLTCSGTRG--N---------AFAVMRDNDGFILTLMKGKE----V----------   56 (113)
T ss_dssp             CCCCEEEEEESCHHHHHHHHHHHHCCEEEEEET--T---------TEEEEECTTCCEEEEEECSS----C----------
T ss_pred             CcccEEEEEeCCHHHHHHHHHHhhCCEEEEeec--C---------cceeeeecceeeeeeeeeec----c----------
Confidence            478999999999999999999999999876532  1         12223344556677765431    0          


Q ss_pred             CCCCceEEEEEeCC---HHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEE
Q 013898          287 EGAGVQHLALVSED---IFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLL  363 (434)
Q Consensus       287 ~G~GvqHIAf~vdD---I~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~ll  363 (434)
                      ..++.+|++|.|+|   +.+..++|++.    |+++... |...                     . .-+|-+|++|.++
T Consensus        57 ~~~~~~h~~f~v~~~~~v~~~~~~l~~~----G~~~~~~-~~~~---------------------~-~~~~~~DPdG~~i  109 (113)
T d1xqaa_          57 QYPKTFHVGFPQESEEQVDKINQRLKED----GFLVEPP-KHAH---------------------A-YTFYVEAPGGFTI  109 (113)
T ss_dssp             CCCTTCCEEEECSSHHHHHHHHHHHHHT----TCCCCCC-EEC----------------------C-EEEEEEETTTEEE
T ss_pred             cccccceeeeeeccccchhhhhhhHHHc----CCccccC-CCCc---------------------e-EEEEEECCCCCEE
Confidence            23568999999987   66788889998    9986643 2220                     1 1347789999999


Q ss_pred             EEE
Q 013898          364 QIF  366 (434)
Q Consensus       364 qif  366 (434)
                      +|+
T Consensus       110 Ei~  112 (113)
T d1xqaa_         110 EVM  112 (113)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            986

>d1mpya2 d.32.1.3 (A:146-307) Catechol 2,3-dioxygenase (metapyrocatechase) {Pseudomonas putida, mt2 [TaxId: 303]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: Catechol 2,3-dioxygenase (metapyrocatechase)
species: Pseudomonas putida, mt2 [TaxId: 303]

Probab=99.18  E-value=9.3e-11  Score=102.10  Aligned_cols=121  Identities=16%  Similarity=0.105  Sum_probs=79.5

Q ss_pred             ceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHh
Q 013898          205 GIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLE  284 (434)
Q Consensus       205 ~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~  284 (434)
                      ...++|||+++|+|++++++||+++|||+..........     .....++..........+...               
T Consensus         2 ~~~rldHv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~---------------   61 (162)
T d1mpya2           2 AAVRFDHALMYGDELPATYDLFTKVLGFYLAEQVLDENG-----TRVAQFLSLSTKAHDVAFIHH---------------   61 (162)
T ss_dssp             CCCEEEEEEEEESCHHHHHHHHHHTTCCEEEEEEECTTC-----CEEEEEEESSSBSCSEEEEEC---------------
T ss_pred             CcccccEEEEECCCHHHHHHHHHHccCCEEEEEEccccc-----cceeeeeeccccccccccccc---------------
Confidence            356799999999999999999999999998765432111     122222222221111111111               


Q ss_pred             hcCCCCceEEEEEeCCHH---HHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCce
Q 013898          285 HNEGAGVQHLALVSEDIF---RTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGT  361 (434)
Q Consensus       285 ~~~G~GvqHIAf~vdDI~---~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~  361 (434)
                       ...+|++|+||.+.+++   ++.++|+++    |+++...| ..        .+          .-....+|-+|++|+
T Consensus        62 -~~~~~~~h~~~~~~~~~~~~~~~~~L~~~----gv~~~~~p-~~--------~~----------~g~~~~~y~~DPdGn  117 (162)
T d1mpya2          62 -PEKGRLHHVSFHLETWEDLLRAADLISMT----DTSIDIGP-TR--------HG----------LTHGKTIYFFDPSGN  117 (162)
T ss_dssp             -SSSSEEEEEEEECSCHHHHHHHHHHHHHH----TCCEEEEE-EE--------CS----------STTCEEEEEECTTSC
T ss_pred             -CCCCccceeEEEEeeehhhhhHHHHHHHc----CCccccCc-cc--------cC----------CCCeEEEEEECCCCC
Confidence             12356999999998765   677899999    99887543 22        11          002235688999999


Q ss_pred             EEEEEccc
Q 013898          362 LLQIFTKP  369 (434)
Q Consensus       362 llqifT~~  369 (434)
                      .+++|+..
T Consensus       118 ~iEl~~~~  125 (162)
T d1mpya2         118 RNEVFCGG  125 (162)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEECC
Confidence            99999864

>d1npba_ d.32.1.2 (A:) Fosfomycin resistance protein A (FosA) {Serratia marcescens [TaxId: 615]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Antibiotic resistance proteins
domain: Fosfomycin resistance protein A (FosA)
species: Serratia marcescens [TaxId: 615]

Probab=99.17  E-value=2.8e-11  Score=102.28  Aligned_cols=119  Identities=18%  Similarity=0.219  Sum_probs=83.1

Q ss_pred             ceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHh
Q 013898          205 GIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLE  284 (434)
Q Consensus       205 ~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~  284 (434)
                      ++++|+||++.|+|++++++||+++|||+......          .. ..+...+....+.+.....   ..        
T Consensus         1 Mi~~l~Hi~l~v~d~~~~~~FY~~vLG~~~~~~~~----------~~-~~~~~~~~~~~l~~~~~~~---~~--------   58 (140)
T d1npba_           1 MLQSLNHLTLAVSDLQKSVTFWHELLGLTLHARWN----------TG-AYLTCGDLWVCLSYDEARQ---YV--------   58 (140)
T ss_dssp             CCCEEEEEEEEESCHHHHHHHHHTTSCCEEEEEET----------TE-EEEEETTEEEEEEECTTCC---CC--------
T ss_pred             CCCcEeEEEEEeCCHHHHHHHHHHHhCCEEEEEec----------cc-cccccccccceeecccccc---cC--------
Confidence            36899999999999999999999999999876532          11 1222223334444433221   11        


Q ss_pred             hcCCCCceEEEEEe--CCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceE
Q 013898          285 HNEGAGVQHLALVS--EDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTL  362 (434)
Q Consensus       285 ~~~G~GvqHIAf~v--dDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~l  362 (434)
                      .....+++|+||.+  +|+++++++|+++    |++++..| ..                      ....+|-+|++|.+
T Consensus        59 ~~~~~~~~h~~~~~~~~d~~~~~~~l~~~----Gv~~~~~~-~~----------------------~~~~~~~~DPdGn~  111 (140)
T d1npba_          59 PPQESDYTHYAFTVAEEDFEPLSQRLEQA----GVTIWKQN-KS----------------------EGASFYFLDPDGHK  111 (140)
T ss_dssp             CGGGSCSCEEEEECCHHHHHHHHHHHHHT----TCCEEECC-CS----------------------SSEEEEEECTTCCE
T ss_pred             CCcCCccceeeeechHHHHHHHHHHHHHC----CCeEeecC-CC----------------------CceEEEEECCCCCE
Confidence            11235689999998  6899999999999    99998764 21                      01235778999999


Q ss_pred             EEEEccccCC
Q 013898          363 LQIFTKPVGD  372 (434)
Q Consensus       363 lqifT~~~~~  372 (434)
                      ++|+|.++.+
T Consensus       112 iEi~~~~~~~  121 (140)
T d1npba_         112 LELHVGSLAA  121 (140)
T ss_dssp             EEEEECCHHH
T ss_pred             EEEEECCchh
Confidence            9999976543

>d1nkia_ d.32.1.2 (A:) Fosfomycin resistance protein A (FosA) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Antibiotic resistance proteins
domain: Fosfomycin resistance protein A (FosA)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.14  E-value=6.7e-11  Score=99.13  Aligned_cols=116  Identities=17%  Similarity=0.201  Sum_probs=80.2

Q ss_pred             ceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHh
Q 013898          205 GIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLE  284 (434)
Q Consensus       205 ~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~  284 (434)
                      ++++|+||++.|+|++++.+||+++||+++....+  .         ..++..+.  ..+.......   .         
T Consensus         1 mi~~i~Hv~l~v~d~~~~~~FY~~~lG~~~~~~~~--~---------~~~~~~~~--~~~~~~~~~~---~---------   55 (134)
T d1nkia_           1 MLTGLNHLTLAVADLPASIAFYRDLLGFRLEARWD--Q---------GAYLELGS--LWLCLSREPQ---Y---------   55 (134)
T ss_dssp             CEEEEEEEEEEESCHHHHHHHHHHTTCCEEEEEET--T---------EEEEEETT--EEEEEEECTT---C---------
T ss_pred             CCCcEeEEEEEeCCHHHHHHHHHHhhCCeEEEecc--c---------eeeeecCC--eEEEEeeecc---c---------
Confidence            37899999999999999999999999999876532  1         11222222  2333322210   0         


Q ss_pred             hcCCCCceEEEEEe--CCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceE
Q 013898          285 HNEGAGVQHLALVS--EDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTL  362 (434)
Q Consensus       285 ~~~G~GvqHIAf~v--dDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~l  362 (434)
                      .....+++|++|.+  +|++++.++|+++    |+++...+ ..+                     . .-+|-+|++|..
T Consensus        56 ~~~~~~~~h~~~~~~~~dl~~~~~~l~~~----G~~~~~~~-~~~---------------------~-~~~~f~DPdGn~  108 (134)
T d1nkia_          56 GGPAADYTHYAFGIAAADFARFAAQLRAH----GVREWKQN-RSE---------------------G-DSFYFLDPDGHR  108 (134)
T ss_dssp             CCCCSSSCEEEEEECHHHHHHHHHHHHHT----TCCEEECC-CSS---------------------S-CEEEEECTTCCE
T ss_pred             cccccccccchhccccchHHHHHHHHHHC----CCcCccCC-Ccc---------------------e-eEEEEECCCCCE
Confidence            11345678888777  6999999999999    99987643 221                     1 235788999999


Q ss_pred             EEEEccccCC
Q 013898          363 LQIFTKPVGD  372 (434)
Q Consensus       363 lqifT~~~~~  372 (434)
                      +++||-++.+
T Consensus       109 iEl~~~~~~~  118 (134)
T d1nkia_         109 LEAHVGDLRS  118 (134)
T ss_dssp             EEEESCCHHH
T ss_pred             EEEEECCchh
Confidence            9999976543

>d1qipa_ d.32.1.1 (A:) Glyoxalase I (lactoylglutathione lyase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Glyoxalase I (lactoylglutathione lyase)
domain: Glyoxalase I (lactoylglutathione lyase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=2.4e-10  Score=100.19  Aligned_cols=105  Identities=13%  Similarity=0.220  Sum_probs=64.0

Q ss_pred             eeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCC-------------------CceEEEec
Q 013898          207 RRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANND-------------------EMVLLPMN  267 (434)
Q Consensus       207 ~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~-------------------g~v~i~L~  267 (434)
                      -+++|+++.|+|++++++||+++|||+..+........     ....++....                   ....+...
T Consensus        22 ~~l~Hi~l~V~Dl~~si~FY~~vLG~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (176)
T d1qipa_          22 FLLQQTMLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMK-----FSLYFLAYEDKNDIPKEKDEKIAWALSRKATLELTHN   96 (176)
T ss_dssp             CEEEEEEEECSCHHHHHHHHHHTTCCEEEEEEEETTTT-----EEEEEEESCCGGGSCSSHHHHHHHHTTSSSEEEEEEE
T ss_pred             eEEeEEEEEeCCHHHHHHHHHHhhCCeEeeeecccCCc-----eEEEEeecCCccccccccccccccccccccceeEEEe
Confidence            46999999999999999999999999987655422111     1111111110                   11111111


Q ss_pred             ccCCCCCCCchHHHHHhhcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCC
Q 013898          268 EPVFGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSP  323 (434)
Q Consensus       268 e~~~g~~~~s~i~~fl~~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~p  323 (434)
                      .+... .......  .......|+.|+||.++|+++..++|++.    |++++..|
T Consensus        97 ~~~~~-~~~~~~~--~~~~~~~g~~h~~~~~~d~~~~~~~l~~~----Gv~~~~~p  145 (176)
T d1qipa_          97 WGTED-DETQSYH--NGNSDPRGFGHIGIAVPDVYSACKRFEEL----GVKFVKKP  145 (176)
T ss_dssp             TTGGG-CTTCCCB--CSSSSSCBEEEEEEECSCHHHHHHHHHHT----TCEEEECT
T ss_pred             ecccc-ccCcCcc--CCCCCccceeEEEeeHHHHHHHHHHHHHC----CCEEeeCC
Confidence            11000 0000000  00123468999999999999999999999    99999753

>d1kw3b2 d.32.1.3 (B:133-288) 2,3-Dihydroxybiphenyl dioxygenase (DHBD, BPHC enzyme) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 2,3-Dihydroxybiphenyl dioxygenase (DHBD, BPHC enzyme)
species: Pseudomonas sp. [TaxId: 306]

Probab=99.07  E-value=2.9e-10  Score=98.50  Aligned_cols=124  Identities=14%  Similarity=0.070  Sum_probs=76.9

Q ss_pred             eeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhh
Q 013898          206 IRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEH  285 (434)
Q Consensus       206 l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~  285 (434)
                      ..+|.||++.|+|++++.+||+++|||++..........  ........+........+.+....               
T Consensus         8 ~~GlgHv~l~v~D~e~t~~FY~~vLG~~~~~~~~~~~~~--~~~~~~~~~~~~~~~h~~a~~~~~---------------   70 (156)
T d1kw3b2           8 DQGIGHFVRCVPDTAKAMAFYTEVLGFVLSDIIDIQMGP--ETSVPAHFLHCNGRHHTIALAAFP---------------   70 (156)
T ss_dssp             GGCSCEEEEECSCHHHHHHHHHHTTCCEEEEEEEEEEET--TEEEEEEEEESSSBSCSEEEECCS---------------
T ss_pred             CCCcceEEEecCCHHHHHHHHHHhcCceeeeEEeeccCC--CCcceeEEEeeccccceeeeccCC---------------
Confidence            468999999999999999999999999987554311111  011112233332222222222211               


Q ss_pred             cCCCCceEEEEEeCCH---HHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceE
Q 013898          286 NEGAGVQHLALVSEDI---FRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTL  362 (434)
Q Consensus       286 ~~G~GvqHIAf~vdDI---~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~l  362 (434)
                       ...|++||||.|+|+   .++.++|+++    |+... .|.+..       .+            ..--+|-+|++|.+
T Consensus        71 -~~~gl~Hiaf~v~~~ddv~~~~d~l~~~----G~~~~-g~~rH~-------~~------------~~~s~Y~~DP~G~~  125 (156)
T d1kw3b2          71 -IPKRIHHFMLQANTIDDVGYAFDRLDAA----GRITS-LLGRHT-------ND------------QTLSFYADTPSPMI  125 (156)
T ss_dssp             -CSSSEEEEEEEBSSHHHHHHHHHHHHHT----TCBCB-CSEEES-------SS------------CCEEEEEECSSTTC
T ss_pred             -CCCceeEEEEECCCHHHHHHHHHHHHhc----CCcee-cCcccC-------CC------------CeEEEEEECCCCCe
Confidence             235799999999754   5578999998    97654 331210       01            11236899999974


Q ss_pred             -EEEEccccC
Q 013898          363 -LQIFTKPVG  371 (434)
Q Consensus       363 -lqifT~~~~  371 (434)
                       +.+++....
T Consensus       126 ~~E~~~~~~~  135 (156)
T d1kw3b2         126 EVEFGWGPRT  135 (156)
T ss_dssp             EEEEEECCCB
T ss_pred             EEEEecCCcc
Confidence             788776544

>d1lgta1 d.32.1.3 (A:2-132) 2,3-Dihydroxybiphenyl dioxygenase (DHBD, BPHC enzyme) {Burkholderia cepacia, formerly Pseudomonas cepacia [TaxId: 292]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 2,3-Dihydroxybiphenyl dioxygenase (DHBD, BPHC enzyme)
species: Burkholderia cepacia, formerly Pseudomonas cepacia [TaxId: 292]

Probab=99.00  E-value=2.4e-09  Score=89.50  Aligned_cols=107  Identities=12%  Similarity=0.039  Sum_probs=72.8

Q ss_pred             cceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCE--EEEEEcCCCCCCCcccccCCCCCCCC
Q 013898           30 VNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDL--RFVFTAPYSPSISDAADAGNSSASLP  107 (434)
Q Consensus        30 i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i--~~vl~~p~~~~~~~~~~~~~~~~~~~  107 (434)
                      |.+|+||.|.|+|++++.+||+++|||+++.+.+        ....++.++-  .++|...                   
T Consensus         2 I~~l~hv~i~V~Dl~~s~~FY~~vLG~~~~~~~~--------~~~~l~~~~~~~~l~l~~~-------------------   54 (131)
T d1lgta1           2 IRSLGYMGFAVSDVAAWRSFLTQKLGLMEAGTTD--------NGDLFRIDSRAWRIAVQQG-------------------   54 (131)
T ss_dssp             EEEEEEEEEEESCHHHHHHHHHHTTCCEEEEEET--------TEEEEESSSBSCSEEEEEC-------------------
T ss_pred             cccccEEEEEeCCHHHHHHHHHHhhCCceeecCC--------cceEEeecCCceEEEEecC-------------------
Confidence            7899999999999999999999999999887643        1344565542  2333320                   


Q ss_pred             CCChhHHhHHHHhcCCceeEEEEEec---CHHHHHHHHHHcCCCCCCCCccc---cCceEEEEEEecCCeEEEEe
Q 013898          108 TFDHAACRSFAASHGLAARSIAVEVE---DADVAFNTSVAHGAKPSSPPVIL---DNLAVIAEVQLYGDVVLRYV  176 (434)
Q Consensus       108 ~~~~~~~~~~l~~hG~gv~~Iaf~V~---Dvd~a~~ra~~~Ga~~~~~p~~~---~~~~~~~~i~~~Gg~~~~fv  176 (434)
                                   ..+++.+++|.|.   |++++.++++++|+++...|...   .+......++.++|..++++
T Consensus        55 -------------~~~~~~h~~f~v~~~~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~f~DPdGn~iE~~  116 (131)
T d1lgta1          55 -------------EVDDLAFAGYEVADAAGLAQMADKLKQAGIAVTTGDASLARRRGVTGLITFADPFGLPLEIY  116 (131)
T ss_dssp             -------------TTCEEEEEEEEESSHHHHHHHHHHHHHTTCCCEECCHHHHHHHTCSEEEEEECTTSCEEEEE
T ss_pred             -------------CCCCceEEEEEEccHHHHHHHHHHHHHcCCceEECCccccccCCceEEEEEECCCCCEEEEE
Confidence                         1246789999996   46889999999999987666432   11112223344555555554

>d1zswa1 d.32.1.10 (A:1-144) Hypothetical protein BC1024 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: BC1024-like
domain: Hypothetical protein BC1024
species: Bacillus cereus [TaxId: 1396]

Probab=99.00  E-value=8.2e-09  Score=86.97  Aligned_cols=123  Identities=11%  Similarity=0.037  Sum_probs=78.0

Q ss_pred             CCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCC----EEEEEEcCCCCCCCcccccCCCC
Q 013898           28 FRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGD----LRFVFTAPYSPSISDAADAGNSS  103 (434)
Q Consensus        28 ~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~----i~~vl~~p~~~~~~~~~~~~~~~  103 (434)
                      +.|.+|+||.|.|+|++++.+||+++|||+++.+...... .......+..+.    ..+.+.......           
T Consensus         2 ~~i~gl~Hv~l~v~Dl~~s~~FY~~vLG~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----------   69 (144)
T d1zswa1           2 YEIKGHHHISMVTKNANENNHFYKNVLGLRRVKMTVNQDD-PSMYHLFYGDKTGSPGTELSFFEIPLVG-----------   69 (144)
T ss_dssp             SCCCSEEEEEEEESCHHHHHHHHHTTTCCEEEEEEEETTE-EEEEEEEEESTTCCTTSEEEEEECTTCC-----------
T ss_pred             CcccceeeEEEEeCCHHHHHHHHHHHhCCeeEeeeccccC-CceeEEEecccccceeeEEeeccccccc-----------
Confidence            4689999999999999999999999999999876532111 112223333221    233333211100           


Q ss_pred             CCCCCCChhHHhHHHHhcCC-ceeEEEEEecC---HHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEeec
Q 013898          104 ASLPTFDHAACRSFAASHGL-AARSIAVEVED---ADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSY  178 (434)
Q Consensus       104 ~~~~~~~~~~~~~~l~~hG~-gv~~Iaf~V~D---vd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd~  178 (434)
                                    ....+. ++.|+||+|+|   ++++.+++.+.|+.+ .+|... ......-++.++|..++|+.+
T Consensus        70 --------------~~~~~~~~~~Hiaf~v~~~~~l~~~~~~l~~~gv~~-~~~~~~-~~~~~~yf~DPdG~~iEl~~~  132 (144)
T d1zswa1          70 --------------RTYRGTNAITRIGLLVPSEDSLHYWKERFEKFDVKH-SEMTTY-ANRPALQFEDAEGLRLVLLVS  132 (144)
T ss_dssp             --------------BCBCCBSEEEEEEEEESCHHHHHHHHHHHHHTTCEE-CCSEEE-TTEEEEEEECTTCCEEEEEEC
T ss_pred             --------------CCccCCCceeEEEEecCCchhHHHHhhhhhccceee-eCcccc-CCeEEEEEECCCCCEEEEEEe
Confidence                          012233 68999999998   678889999999964 555443 222233456667777777664

>d1f1ua2 d.32.1.3 (A:148-323) Homoprotocatechuate 2,3-dioxygenase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: Homoprotocatechuate 2,3-dioxygenase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=98.98  E-value=1.1e-09  Score=96.66  Aligned_cols=119  Identities=18%  Similarity=0.253  Sum_probs=76.9

Q ss_pred             ceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHh
Q 013898          205 GIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLE  284 (434)
Q Consensus       205 ~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~  284 (434)
                      .+.+|+||++.|+|+++++.|| ++|||++.......+  +   .....++........+.+...               
T Consensus         2 ~i~rl~Hv~l~v~Dle~s~~FY-e~LGf~~~d~~~~~~--~---~~~~~~~~~~~~~~~l~~~~~---------------   60 (176)
T d1f1ua2           2 ELVRLDHFNQVTPDVPRGRAYL-EDLGFRVSEDIKDSD--G---VTYAAWMHRKQTVHDTALTGG---------------   60 (176)
T ss_dssp             CCCEEEEEEEEESCHHHHHHHH-HHTTCEEEEEEECTT--C---CEEEEEEESSSSSCSEEEEES---------------
T ss_pred             ceeEeeeEEEEcCCHHHHHHHH-HHCCCEEEEEEecCC--c---ceeeeeeccCccccceecccc---------------
Confidence            3678999999999999999999 689999876553211  1   122333443333333333222               


Q ss_pred             hcCCCCceEEEEEeCCH---HHHHHHHHHhcCCCCceec--cCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCC
Q 013898          285 HNEGAGVQHLALVSEDI---FRTLREMRKRSGVGGFEFM--PSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQ  359 (434)
Q Consensus       285 ~~~G~GvqHIAf~vdDI---~~av~~L~~~~~~~Gv~fl--~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~  359 (434)
                        .++|++|+||.+.++   .++.++|+++    |+...  ..| .        |-+          .-..--+|-+|++
T Consensus        61 --~~~~~~H~~f~~~~~~~v~~~~~~l~~~----g~~~~~~~~p-~--------~h~----------~g~~~~~Y~~DPd  115 (176)
T d1f1ua2          61 --NGPRMHHVAFATHEKHNIIQICDKMGAL----RISDRIERGP-G--------RHG----------VSNAFYLYILDPD  115 (176)
T ss_dssp             --SBSEEEEEEEECSSHHHHHHHHHHHHHT----TCGGGEEEEE-E--------ECS----------TTCCEEEEEECTT
T ss_pred             --cCCCccceeEEeccchhHHHHHHHHHHc----CCceeeeecc-c--------ccC----------CCCceEEEEECCC
Confidence              346799999999865   4566788888    87542  221 1        111          0011246889999


Q ss_pred             ceEEEEEccc
Q 013898          360 GTLLQIFTKP  369 (434)
Q Consensus       360 g~llqifT~~  369 (434)
                      |+++.+|+.-
T Consensus       116 G~~iEl~~~~  125 (176)
T d1f1ua2         116 GHRIEIYTQD  125 (176)
T ss_dssp             CCEEEEEECC
T ss_pred             CCEEEEEeCC
Confidence            9999999964

>d2i7ra1 d.32.1.2 (A:1-115) Hypotheical protein SP0731 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Antibiotic resistance proteins
domain: Hypotheical protein SP0731
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.98  E-value=4.2e-10  Score=92.06  Aligned_cols=113  Identities=13%  Similarity=0.162  Sum_probs=77.9

Q ss_pred             eeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhc
Q 013898          207 RRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHN  286 (434)
Q Consensus       207 ~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~  286 (434)
                      +.|+|+.|.|+|++++++||+++||++..+..+    +     ..  .+..  +...|.|.+...   .+       ...
T Consensus         1 m~l~~i~i~V~di~~a~~FYe~~lg~~~~~~~~----~-----~~--~~~~--g~~~l~l~~~~~---~~-------~~~   57 (115)
T d2i7ra1           1 MNLNQLDIIVSNVPQVCADLEHILDKKADYAND----G-----FA--QFTI--GSHCLMLSQNHL---VP-------LEN   57 (115)
T ss_dssp             CEEEEEEEECSCHHHHHHHHHHHHTSCCSEEET----T-----EE--EEEE--TTEEEEEESSCS---SS-------CCC
T ss_pred             CcceEEEEEECCHHHHHHHHHHhhCCceeeecC----C-----eE--EEEE--cCceeeeeeccc---CC-------CCC
Confidence            368999999999999999999999999876532    1     11  1222  446676655421   01       011


Q ss_pred             CCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEEEE
Q 013898          287 EGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIF  366 (434)
Q Consensus       287 ~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llqif  366 (434)
                      .+.|+ |++|.|+|+++++++|+++    |++++.. |...      ..+             ...++-+|++|.++++|
T Consensus        58 ~~~~~-~~~f~v~D~d~~~~~l~~~----G~~i~~~-~~~~------~~g-------------~~~~~~~DPdGn~ie~~  112 (115)
T d2i7ra1          58 FQSGI-IIHIEVEDVDQNYKRLNEL----GIKVLHG-PTVT------DWG-------------TESLLVQGPAGLVLDFY  112 (115)
T ss_dssp             CCSCE-EEEEECSCHHHHHHHHHHH----TCCEEEE-EEEC------TTS-------------CEEEEEECGGGCEEEEE
T ss_pred             CCcce-EEEEEECCHHHHHHHHHhh----ccccccc-eEEe------eCC-------------eEEEEEECCCCCEEEEE
Confidence            34444 8999999999999999999    9998864 3320      011             12446678889999988


Q ss_pred             c
Q 013898          367 T  367 (434)
Q Consensus       367 T  367 (434)
                      .
T Consensus       113 ~  113 (115)
T d2i7ra1         113 R  113 (115)
T ss_dssp             E
T ss_pred             E
Confidence            5

>d1r9ca_ d.32.1.2 (A:) Fosfomycin resistance protein FosX {Mesorhizobium loti [TaxId: 381]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Antibiotic resistance proteins
domain: Fosfomycin resistance protein FosX
species: Mesorhizobium loti [TaxId: 381]

Probab=98.97  E-value=3.4e-09  Score=87.68  Aligned_cols=97  Identities=15%  Similarity=0.111  Sum_probs=69.2

Q ss_pred             CcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCC
Q 013898           29 RVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPT  108 (434)
Q Consensus        29 ~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~  108 (434)
                      ++.+|+||.|.|+|.+++++||++.|||+++.+.+..... ......+..++..+.+.....+                 
T Consensus         1 Mi~~i~Hi~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----------------   62 (130)
T d1r9ca_           1 MIEGLSHMTFIVRDLERMTRILEGVFDAREVYASDTEQFS-LSREKFFLIGDIWVAIMQGEKL-----------------   62 (130)
T ss_dssp             CEEEEEEEEEEESCHHHHHHHHHHHHCCEEEEEGGGSTTC-CSCEEEEEETTEEEEEEECCCC-----------------
T ss_pred             CCCcEeEEEEEeCCHHHHHHHHHHhcCCEEEEEcCCcccc-ceeEEEEecCCEEEeecccccc-----------------
Confidence            3679999999999999999999999999999875422211 1223445667777776553211                 


Q ss_pred             CChhHHhHHHHhcCCceeEEEEEec--CHHHHHHHHHHcCCCCCCCCcc
Q 013898          109 FDHAACRSFAASHGLAARSIAVEVE--DADVAFNTSVAHGAKPSSPPVI  155 (434)
Q Consensus       109 ~~~~~~~~~l~~hG~gv~~Iaf~V~--Dvd~a~~ra~~~Ga~~~~~p~~  155 (434)
                                  ...+..++||.|+  |++++++++++.|+++..++..
T Consensus        63 ------------~~~~~~~~~f~v~~~dv~~~~~~l~~~gv~i~~~~~~   99 (130)
T d1r9ca_          63 ------------AERSYNHIAFKIDDADFDRYAERVGKLGLDMRPPRPR   99 (130)
T ss_dssp             ------------SSCCSCEEEEECCGGGHHHHHHHHHHHTCCBCCCCC-
T ss_pred             ------------cccceeeeeecccHHHHHHHHHHHHHCCCeEecCCcc
Confidence                        1124457888664  7999999999999997665433

>d1xqaa_ d.32.1.2 (A:) Hypothetical protein BC3580 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Antibiotic resistance proteins
domain: Hypothetical protein BC3580
species: Bacillus cereus [TaxId: 1396]

Probab=98.97  E-value=3.2e-09  Score=85.47  Aligned_cols=87  Identities=10%  Similarity=0.077  Sum_probs=63.4

Q ss_pred             ceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEe-CCEEEEEEcCCCCCCCcccccCCCCCCCCCC
Q 013898           31 NRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRS-GDLRFVFTAPYSPSISDAADAGNSSASLPTF  109 (434)
Q Consensus        31 ~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~-G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~  109 (434)
                      ++|+||.|.|+|++++++||++.|||+++.+.+  +     ...++.. +...+.+......                  
T Consensus         2 m~i~Hi~l~v~Dl~~a~~FY~~~lG~~~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~------------------   56 (113)
T d1xqaa_           2 MGIKHLNLTVADVVAAREFLEKYFGLTCSGTRG--N-----AFAVMRDNDGFILTLMKGKEV------------------   56 (113)
T ss_dssp             CCCCEEEEEESCHHHHHHHHHHHHCCEEEEEET--T-----TEEEEECTTCCEEEEEECSSC------------------
T ss_pred             CcccEEEEEeCCHHHHHHHHHHhhCCEEEEeec--C-----cceeeeecceeeeeeeeeecc------------------
Confidence            689999999999999999999999999987754  1     1223333 4456666543211                  


Q ss_pred             ChhHHhHHHHhcCCceeEEEEEecC---HHHHHHHHHHcCCCCCCCC
Q 013898          110 DHAACRSFAASHGLAARSIAVEVED---ADVAFNTSVAHGAKPSSPP  153 (434)
Q Consensus       110 ~~~~~~~~l~~hG~gv~~Iaf~V~D---vd~a~~ra~~~Ga~~~~~p  153 (434)
                                 ...+..|++|.|+|   ++++++++++.|+++...|
T Consensus        57 -----------~~~~~~h~~f~v~~~~~v~~~~~~l~~~G~~~~~~~   92 (113)
T d1xqaa_          57 -----------QYPKTFHVGFPQESEEQVDKINQRLKEDGFLVEPPK   92 (113)
T ss_dssp             -----------CCCTTCCEEEECSSHHHHHHHHHHHHHTTCCCCCCE
T ss_pred             -----------cccccceeeeeeccccchhhhhhhHHHcCCccccCC
Confidence                       11245689999987   6789999999999865444

>d1f9za_ d.32.1.1 (A:) Glyoxalase I (lactoylglutathione lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Glyoxalase I (lactoylglutathione lyase)
domain: Glyoxalase I (lactoylglutathione lyase)
species: Escherichia coli [TaxId: 562]

Probab=98.96  E-value=4.2e-09  Score=86.52  Aligned_cols=98  Identities=13%  Similarity=0.159  Sum_probs=62.9

Q ss_pred             eeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCC--ceEEEecccCCCCCCCchHHHHHh
Q 013898          207 RRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDE--MVLLPMNEPVFGTKRKSQIQTYLE  284 (434)
Q Consensus       207 ~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g--~v~i~L~e~~~g~~~~s~i~~fl~  284 (434)
                      +++.|++|.|+|++++++||+++|||+.......  ....   ...........  ...........   ..       .
T Consensus         1 Mkl~Hv~i~V~Dl~~s~~FY~~iLG~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~---~~-------~   65 (135)
T d1f9za_           1 MRLLHTMLRVGDLQRSIDFYTKVLGMKLLRTSEN--PEYK---YSLAFVGYGPETEEAVIELTYNWG---VD-------K   65 (135)
T ss_dssp             CCEEEEEEECSCHHHHHHHHHHTTCCEEEEEEEE--TTTT---EEEEEEESSCTTTSCEEEEEEETT---CC-------C
T ss_pred             CcceEEEEEcCCHHHHHHHHHHHhCCEEEeeccc--cccc---eeeeeeccceeeeccccccccccc---cc-------c
Confidence            4789999999999999999999999998765431  1111   11112211111  11111111100   00       1


Q ss_pred             hcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCC
Q 013898          285 HNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSP  323 (434)
Q Consensus       285 ~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~p  323 (434)
                      ...+.+..|+++.++++++..+++++.    |+.+...|
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~~~~~  100 (135)
T d1f9za_          66 YELGTAYGHIALSVDNAAEACEKIRQN----GGNVTREA  100 (135)
T ss_dssp             CCCCSSEEEEEEECSCHHHHHHHHHHT----TCEEEEEE
T ss_pred             ccccccceeeccchHHHHHHHHHHHHc----CCCeecCC
Confidence            124567999999999999999999999    98887643

>d2c21a1 d.32.1.1 (A:3-141) Glyoxalase I (lactoylglutathione lyase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Glyoxalase I (lactoylglutathione lyase)
domain: Glyoxalase I (lactoylglutathione lyase)
species: Leishmania major [TaxId: 5664]

Probab=98.95  E-value=3.4e-09  Score=87.23  Aligned_cols=119  Identities=16%  Similarity=0.206  Sum_probs=76.8

Q ss_pred             eeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCC--ceEEEecccCCCCCCCchHHHHHh
Q 013898          207 RRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDE--MVLLPMNEPVFGTKRKSQIQTYLE  284 (434)
Q Consensus       207 ~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g--~v~i~L~e~~~g~~~~s~i~~fl~  284 (434)
                      ++|+||+|.|.|++++++||+++|||++.+........     ...........  ..........    ..      ..
T Consensus         2 ~r~~Hv~l~V~Dl~~s~~FY~~~LG~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~----~~------~~   66 (139)
T d2c21a1           2 RRMLHTMIRVGDLDRSIKFYTERLGMKVLRKWDVPEDK-----YTLVFLGYGPEMSSTVLELTYNY----GV------TS   66 (139)
T ss_dssp             CEEEEEEEECSCHHHHHHHHHHTTCCEEEEEEEEGGGT-----EEEEEEESSCTTTSCEEEEEEET----TC------CC
T ss_pred             CceEEEEEEeCCHHHHHHHHHHHhCCEeeccccccccc-----eeeeeeccccccccccccccccc----Cc------cc
Confidence            58999999999999999999999999988765422211     11111111111  1111111110    00      01


Q ss_pred             hcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEE
Q 013898          285 HNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQ  364 (434)
Q Consensus       285 ~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llq  364 (434)
                      ...+.+..|+++.++++.+..+.++..    ++++...| .                       ....+|-+|++|++++
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~-----------------------g~~~~~~~DPdGn~iE  118 (139)
T d2c21a1          67 YKHDEAYGHIAIGVEDVKELVADMRKH----DVPIDYED-E-----------------------SGFMAFVVDPDGYYIE  118 (139)
T ss_dssp             CCCCSSEEEEEEEESCHHHHHHHHHHT----TCCEEEEC-S-----------------------SSSEEEEECTTSCEEE
T ss_pred             ccCCCccceeeeehhhHHHHHHHHHHc----CCceeeCC-C-----------------------CcEEEEEECCCCCEEE
Confidence            124556889999999999999999998    87776532 2                       2235677899998888


Q ss_pred             EEcc
Q 013898          365 IFTK  368 (434)
Q Consensus       365 ifT~  368 (434)
                      +++.
T Consensus       119 l~~~  122 (139)
T d2c21a1         119 LLNE  122 (139)
T ss_dssp             EEEH
T ss_pred             EEEC
Confidence            8764

>d2pjsa1 d.32.1.2 (A:3-113) Uncharacterized protein Atu1953 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Antibiotic resistance proteins
domain: Uncharacterized protein Atu1953
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.94  E-value=1.8e-09  Score=86.44  Aligned_cols=90  Identities=14%  Similarity=0.113  Sum_probs=61.3

Q ss_pred             ceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCC
Q 013898           31 NRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFD  110 (434)
Q Consensus        31 ~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~  110 (434)
                      .++ +..|.|+|.+++.+||++.|||+++...+       . ...+..++....+.......                  
T Consensus         2 ~ri-~~~l~v~d~~~a~~FY~~~lG~~~~~~~~-------~-~~~~~~~~~~~~~~~~~~~~------------------   54 (111)
T d2pjsa1           2 RRV-VANIATPEPARAQAFYGDILGMPVAMDHG-------W-IVTHASPLEAHAQVSFAREG------------------   54 (111)
T ss_dssp             EEE-EEEEECSCGGGGHHHHTTTTCCCEEEECS-------S-EEEEEEEEEEEEEEEEESSS------------------
T ss_pred             eEE-EEEEEeCCHHHHHHHHHHhhCCceeeccc-------c-eeEeccccccceeeeccccc------------------
Confidence            455 57899999999999999999999987754       1 12222222222222211110                  


Q ss_pred             hhHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccc
Q 013898          111 HAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVIL  156 (434)
Q Consensus       111 ~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~  156 (434)
                               ..+.+..+++|.|+|++++++++++.|++++.+|...
T Consensus        55 ---------~~~~~~~~~~~~~~dvd~~~~~l~~~g~~~~~~p~~~   91 (111)
T d2pjsa1          55 ---------GSGTDVPDLSIEVDNFDEVHARILKAGLPIEYGPVTE   91 (111)
T ss_dssp             ---------BTTBCCCSEEEEESCHHHHHHHHHHTTCCCSEEEEEC
T ss_pred             ---------CCCCceeEEEEEecCHHHHHHHHHhhccccccCCeEc
Confidence                     1223345799999999999999999999987777654

>d1twua_ d.32.1.8 (A:) Hypothetical protein YycE {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Hypothetical protein YycE
domain: Hypothetical protein YycE
species: Bacillus subtilis [TaxId: 1423]

Probab=98.94  E-value=6.3e-09  Score=87.27  Aligned_cols=120  Identities=12%  Similarity=0.164  Sum_probs=78.0

Q ss_pred             eeeeeeeeEe----cCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHH
Q 013898          206 IRRLDHAVGN----VPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQT  281 (434)
Q Consensus       206 l~~iDHv~i~----V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~  281 (434)
                      +..+.|+.+.    |.|++++++||+++|||+..+.....+      +.....+..++....+.+......  ..     
T Consensus         3 ~~~~~~~~~RVa~pv~Dle~s~~FY~~vLG~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~~--~~-----   69 (137)
T d1twua_           3 FSSFQAAQIRIARPTGQLDEIIRFYEEGLCLKRIGEFSQHN------GYDGVMFGLPHADYHLEFTQYEGG--ST-----   69 (137)
T ss_dssp             CSSCBCSCEEEEEECSCHHHHHHHHTTTSCCCEEEEEEEET------TEEEEEEESSSSSEEEEEEEETTC--CC-----
T ss_pred             cCCCceEEEEEecccCCHHHHHHHHHhccCCceeeeecccc------ceeEEEecCCCCceeeeccccccc--cc-----
Confidence            3456666555    469999999999999999887654211      122334445555566665443210  11     


Q ss_pred             HHhhcCCCCceEEEEEeCC---HHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCC
Q 013898          282 YLEHNEGAGVQHLALVSED---IFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDD  358 (434)
Q Consensus       282 fl~~~~G~GvqHIAf~vdD---I~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~  358 (434)
                         ...+.+.+|+||.|+|   +++++++|++.    |++++. ||..|.                    ...-+|-+|+
T Consensus        70 ---~~~~~~~~hlaf~v~~~~dv~~~~~~l~~~----G~~~~~-~~~~~~--------------------~~~~~~f~DP  121 (137)
T d1twua_          70 ---APVPHPDSLLVFYVPNAVELAAITSKLKHM----GYQEVE-SENPYW--------------------SNGGVTIEDP  121 (137)
T ss_dssp             ---CCCCCTTCEEEEECCCHHHHHHHHHHHHHT----TCCEEC-CSSHHH--------------------HSSEEEEECT
T ss_pred             ---ccccccCceEEEEeCCHHHHHHHHHHHHHC----CCeEeC-CCCCCC--------------------CceEEEEECC
Confidence               1124558999999876   78889999999    999985 433321                    1223467889


Q ss_pred             CceEEEEE
Q 013898          359 QGTLLQIF  366 (434)
Q Consensus       359 ~g~llqif  366 (434)
                      +|+.+.+.
T Consensus       122 DG~~Iel~  129 (137)
T d1twua_         122 DGWRIVFM  129 (137)
T ss_dssp             TCCEEEEE
T ss_pred             CCCEEEEE
Confidence            99877765

>d1f9za_ d.32.1.1 (A:) Glyoxalase I (lactoylglutathione lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Glyoxalase I (lactoylglutathione lyase)
domain: Glyoxalase I (lactoylglutathione lyase)
species: Escherichia coli [TaxId: 562]

Probab=98.94  E-value=2.7e-09  Score=87.68  Aligned_cols=125  Identities=19%  Similarity=0.150  Sum_probs=80.0

Q ss_pred             ceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCC--EEEEEEcCCCCCCCcccccCCCCCCCCC
Q 013898           31 NRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGD--LRFVFTAPYSPSISDAADAGNSSASLPT  108 (434)
Q Consensus        31 ~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~--i~~vl~~p~~~~~~~~~~~~~~~~~~~~  108 (434)
                      |+++||.|.|+|++++.+||++.|||++..+.....+.  .....+..+.  ............                
T Consensus         1 Mkl~Hv~i~V~Dl~~s~~FY~~iLG~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~----------------   62 (135)
T d1f9za_           1 MRLLHTMLRVGDLQRSIDFYTKVLGMKLLRTSENPEYK--YSLAFVGYGPETEEAVIELTYNWG----------------   62 (135)
T ss_dssp             CCEEEEEEECSCHHHHHHHHHHTTCCEEEEEEEETTTT--EEEEEEESSCTTTSCEEEEEEETT----------------
T ss_pred             CcceEEEEEcCCHHHHHHHHHHHhCCEEEeeccccccc--eeeeeeccceeeeccccccccccc----------------
Confidence            57999999999999999999999999988765422221  1122222111  000000000000                


Q ss_pred             CChhHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCcccc-CceEEEEEEecCCeEEEEeeccC
Q 013898          109 FDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILD-NLAVIAEVQLYGDVVLRYVSYKD  180 (434)
Q Consensus       109 ~~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~-~~~~~~~i~~~Gg~~~~fvd~~~  180 (434)
                             ......+.+..++++.+++++.+.+++.+.|.....+|.... +......+++++|..++|++.++
T Consensus        63 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iEl~q~~~  128 (135)
T d1f9za_          63 -------VDKYELGTAYGHIALSVDNAAEACEKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEKD  128 (135)
T ss_dssp             -------CCCCCCCSSEEEEEEECSCHHHHHHHHHHTTCEEEEEEEECTTSCCEEEEEECTTSCEEEEEEC--
T ss_pred             -------cccccccccceeeccchHHHHHHHHHHHHcCCCeecCCccccCCCeEEEEEECCCCCEEEEEECCC
Confidence                   000112347789999999999999999999998777665432 23445567888888888888643

>d1klla_ d.32.1.2 (A:) Mitomycin resistance protein D, MRD {Streptomyces lavendulae [TaxId: 1914]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Antibiotic resistance proteins
domain: Mitomycin resistance protein D, MRD
species: Streptomyces lavendulae [TaxId: 1914]

Probab=98.90  E-value=6.9e-10  Score=92.00  Aligned_cols=118  Identities=17%  Similarity=0.173  Sum_probs=74.9

Q ss_pred             eeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHh---
Q 013898          208 RLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLE---  284 (434)
Q Consensus       208 ~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~---  284 (434)
                      +|+|+++.|.|++++++||++ |||........  .     +.   +.....+...+.+....       ....+..   
T Consensus         2 ri~hv~l~V~D~~~s~~FY~~-Lg~~~~~~~~~--~-----~~---~~~~~~~~~~~~~~~~~-------~~~~~~~~~~   63 (128)
T d1klla_           2 RISLFAVVVEDMAKSMEFYRK-MGVEIPAEADS--A-----PH---TEAVLDGGIRLAWDTVE-------TVRSYDPEWQ   63 (128)
T ss_dssp             CCCEEEEEESCHHHHHHHHHH-TTCCCCTTGGG--C-----SE---EEEECGGGCEEEEEEHH-------HHHHHCTTCC
T ss_pred             eEeEEEEEcCCHHHHHHHHHH-hCCcccccccc--c-----cc---eeeeccceeeeeecccc-------cccccCCCCC
Confidence            799999999999999999976 89987643221  1     11   11112234455443211       0111110   


Q ss_pred             hcCCCCceEEEEEeCC---HHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCce
Q 013898          285 HNEGAGVQHLALVSED---IFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGT  361 (434)
Q Consensus       285 ~~~G~GvqHIAf~vdD---I~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~  361 (434)
                      ...+.+..|++|.|+|   +++++++|+++    |++++.. |..+        +           -.....|-+|++|+
T Consensus        64 ~~~~~~~~~l~~~v~~~~~l~~~~~~l~~~----G~~~~~~-p~~~--------~-----------~G~~~~~~~DPdG~  119 (128)
T d1klla_          64 APTGGHRFAIAFEFPDTASVDKKYAELVDA----GYEGHLK-PWNA--------V-----------WGQRYAIVKDPDGN  119 (128)
T ss_dssp             CCCSSCSCEEEEECSSHHHHHHHHHHHHHT----TCEEEEE-EEEC--------T-----------TSEEEEEEECTTSC
T ss_pred             CCccccceeEeeeeccchhhHHHHHHHHhc----cCccccC-CeEc--------C-----------CCcEEEEEECCCCC
Confidence            1123446799999987   77789999999    9999864 3431        0           01124577999999


Q ss_pred             EEEEEc
Q 013898          362 LLQIFT  367 (434)
Q Consensus       362 llqifT  367 (434)
                      ++++|+
T Consensus       120 ~iel~~  125 (128)
T d1klla_         120 VVDLFA  125 (128)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            999995

>d1kw3b1 d.32.1.3 (B:1-132) 2,3-Dihydroxybiphenyl dioxygenase (DHBD, BPHC enzyme) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 2,3-Dihydroxybiphenyl dioxygenase (DHBD, BPHC enzyme)
species: Pseudomonas sp. [TaxId: 306]

Probab=98.89  E-value=7.4e-09  Score=86.66  Aligned_cols=85  Identities=12%  Similarity=0.097  Sum_probs=64.9

Q ss_pred             cceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCE--EEEEEcCCCCCCCcccccCCCCCCCC
Q 013898           30 VNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDL--RFVFTAPYSPSISDAADAGNSSASLP  107 (434)
Q Consensus        30 i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i--~~vl~~p~~~~~~~~~~~~~~~~~~~  107 (434)
                      |.+|+||.|.|+|++++.+||+++|||++..+.+        ....++.++-  .+++...                   
T Consensus         2 i~~L~hv~i~v~Dl~~s~~FY~~vLG~~~~~~~~--------~~~~l~~~~~~~~l~~~~~-------------------   54 (132)
T d1kw3b1           2 IERLGYLGFAVKDVPAWDHFLTKSVGLMAAGSAG--------DAALYRADQRAWRIAVQPG-------------------   54 (132)
T ss_dssp             CCEEEEEEEEESCHHHHHHHHHHTTCCEEEEEET--------TEEEEESSSBSCSEEEEEC-------------------
T ss_pred             cccccEEEEEeCCHHHHHHHHHHHhCCceecccc--------ceeeeeeeecceeeeeecc-------------------
Confidence            7899999999999999999999999999887643        1344565543  2333220                   


Q ss_pred             CCChhHHhHHHHhcCCceeEEEEEec---CHHHHHHHHHHcCCCCCCCCc
Q 013898          108 TFDHAACRSFAASHGLAARSIAVEVE---DADVAFNTSVAHGAKPSSPPV  154 (434)
Q Consensus       108 ~~~~~~~~~~l~~hG~gv~~Iaf~V~---Dvd~a~~ra~~~Ga~~~~~p~  154 (434)
                                   -..++.+++|.|.   |++++.+++.++|+++...|.
T Consensus        55 -------------~~~~~~h~~f~v~~~~dl~~~~~~l~~~g~~~~~~~~   91 (132)
T d1kw3b1          55 -------------ELDDLAYAGLEVDDAAALERMADKLRQAGVAFTRGDE   91 (132)
T ss_dssp             -------------TTCEEEEEEEECSSHHHHHHHHHHHHHHTCCCEECCH
T ss_pred             -------------CCCCceEEEEEeccHHHHHHHHHHHHHcCCCceecCc
Confidence                         1237889999996   478899999999999876654

>d1f1ua1 d.32.1.3 (A:2-147) Homoprotocatechuate 2,3-dioxygenase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: Homoprotocatechuate 2,3-dioxygenase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=98.88  E-value=5e-09  Score=89.05  Aligned_cols=114  Identities=15%  Similarity=0.070  Sum_probs=78.3

Q ss_pred             cceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCC--CceEEEecccCCCCCCCchHHH
Q 013898          204 YGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANND--EMVLLPMNEPVFGTKRKSQIQT  281 (434)
Q Consensus       204 ~~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~--g~v~i~L~e~~~g~~~~s~i~~  281 (434)
                      ..+++|+||.+.|.|++++++||+++|||+......    .       ...+....  ....+.+..             
T Consensus        12 ~~i~rl~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~----~-------~~~~~~~~~~~~~~~~~~~-------------   67 (146)
T d1f1ua1          12 PDIVRCAYMEIVVTDLAKSREFYVDVLGLHVTEEDE----N-------TIYLRSLEEFIHHNLVLRQ-------------   67 (146)
T ss_dssp             CCEEEEEEEEEEESCHHHHHHHHTTTTCCEEEEECS----S-------EEEEECTTCCSSCSEEEEE-------------
T ss_pred             CCCcEEeEEEEEeCCHHHHHHHHHhccCcEEEeecC----C-------ceeeecccccccceeeccc-------------
Confidence            358999999999999999999999999999886421    0       11222111  111122211             


Q ss_pred             HHhhcCCCCceEEEEEeC---CHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCC
Q 013898          282 YLEHNEGAGVQHLALVSE---DIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDD  358 (434)
Q Consensus       282 fl~~~~G~GvqHIAf~vd---DI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~  358 (434)
                          ...+|++|+||.+.   |++++.++|+++    |+++...| ..-        .   .       -....+|-+|+
T Consensus        68 ----~~~~~~~h~~~~~~~~~dl~~~~~~l~~~----G~~~~~~~-~~~--------~---~-------g~~~~~~~~DP  120 (146)
T d1f1ua1          68 ----GPIAAVAAFAYRVKSPAEVDAAEAYYKEL----GCRTERRK-EGF--------T---K-------GIGDSVRVEDP  120 (146)
T ss_dssp             ----CSSCEEEEEEEEESSHHHHHHHHHHHHHT----TCCEEEET-TCS--------S---T-------TBCSEEEEECT
T ss_pred             ----cCCCCCceeeEeeccchhHHHHHHHHHHc----CCceeecc-ccc--------c---C-------CceEEEEEECC
Confidence                13467999999996   688899999999    99887643 220        0   0       01235678999


Q ss_pred             CceEEEEEcc
Q 013898          359 QGTLLQIFTK  368 (434)
Q Consensus       359 ~g~llqifT~  368 (434)
                      +|..+++|..
T Consensus       121 dG~~iEl~~~  130 (146)
T d1f1ua1         121 LGFPYEFFYE  130 (146)
T ss_dssp             TSCEEEEECC
T ss_pred             CCcEEEEEEe
Confidence            9999999973

>d1npba_ d.32.1.2 (A:) Fosfomycin resistance protein A (FosA) {Serratia marcescens [TaxId: 615]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Antibiotic resistance proteins
domain: Fosfomycin resistance protein A (FosA)
species: Serratia marcescens [TaxId: 615]

Probab=98.87  E-value=1e-08  Score=85.95  Aligned_cols=93  Identities=15%  Similarity=0.148  Sum_probs=66.6

Q ss_pred             CcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCC
Q 013898           29 RVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPT  108 (434)
Q Consensus        29 ~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~  108 (434)
                      ++.+|+||.|.|+|++++++||++.|||++....+        ....+..++..+.+........               
T Consensus         1 Mi~~l~Hi~l~v~d~~~~~~FY~~vLG~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~---------------   57 (140)
T d1npba_           1 MLQSLNHLTLAVSDLQKSVTFWHELLGLTLHARWN--------TGAYLTCGDLWVCLSYDEARQY---------------   57 (140)
T ss_dssp             CCCEEEEEEEEESCHHHHHHHHHTTSCCEEEEEET--------TEEEEEETTEEEEEEECTTCCC---------------
T ss_pred             CCCcEeEEEEEeCCHHHHHHHHHHHhCCEEEEEec--------cccccccccccceeeccccccc---------------
Confidence            36899999999999999999999999999887643        1234556666655554322110               


Q ss_pred             CChhHHhHHHHhcCCceeEEEEEe--cCHHHHHHHHHHcCCCCCCCC
Q 013898          109 FDHAACRSFAASHGLAARSIAVEV--EDADVAFNTSVAHGAKPSSPP  153 (434)
Q Consensus       109 ~~~~~~~~~l~~hG~gv~~Iaf~V--~Dvd~a~~ra~~~Ga~~~~~p  153 (434)
                               ......+..|++|.+  +|+++++++++++|+++...|
T Consensus        58 ---------~~~~~~~~~h~~~~~~~~d~~~~~~~l~~~Gv~~~~~~   95 (140)
T d1npba_          58 ---------VPPQESDYTHYAFTVAEEDFEPLSQRLEQAGVTIWKQN   95 (140)
T ss_dssp             ---------CCGGGSCSCEEEEECCHHHHHHHHHHHHHTTCCEEECC
T ss_pred             ---------CCCcCCccceeeeechHHHHHHHHHHHHHCCCeEeecC
Confidence                     001223556777776  689999999999999876554

>d1qipa_ d.32.1.1 (A:) Glyoxalase I (lactoylglutathione lyase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Glyoxalase I (lactoylglutathione lyase)
domain: Glyoxalase I (lactoylglutathione lyase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=3.8e-09  Score=92.29  Aligned_cols=128  Identities=15%  Similarity=0.133  Sum_probs=82.2

Q ss_pred             CcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCC---------------------EEEEEEc
Q 013898           29 RVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGD---------------------LRFVFTA   87 (434)
Q Consensus        29 ~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~---------------------i~~vl~~   87 (434)
                      ....++||.|.|+|++++++||++.|||+++.+...+.+.  ........+.                     ..+.+..
T Consensus        20 ~~~~l~Hi~l~V~Dl~~si~FY~~vLG~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (176)
T d1qipa_          20 KDFLLQQTMLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMK--FSLYFLAYEDKNDIPKEKDEKIAWALSRKATLELTHNW   97 (176)
T ss_dssp             TTCEEEEEEEECSCHHHHHHHHHHTTCCEEEEEEEETTTT--EEEEEEESCCGGGSCSSHHHHHHHHTTSSSEEEEEEET
T ss_pred             cceEEeEEEEEeCCHHHHHHHHHHhhCCeEeeeecccCCc--eEEEEeecCCccccccccccccccccccccceeEEEee
Confidence            3567999999999999999999999999988766433321  1122222111                     1111111


Q ss_pred             CCCCCCCcccccCCCCCCCCCCChhHHhHHHHhcC-CceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCceEEEEEE
Q 013898           88 PYSPSISDAADAGNSSASLPTFDHAACRSFAASHG-LAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQ  166 (434)
Q Consensus        88 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~hG-~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~  166 (434)
                      +.....          ..  ..      . ....+ .|+.+++|.|+|++++++++++.|+++..+|.... ...+..++
T Consensus        98 ~~~~~~----------~~--~~------~-~~~~~~~g~~h~~~~~~d~~~~~~~l~~~Gv~~~~~p~~g~-~~~~~f~~  157 (176)
T d1qipa_          98 GTEDDE----------TQ--SY------H-NGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKPDDGK-MKGLAFIQ  157 (176)
T ss_dssp             TGGGCT----------TC--CC------B-CSSSSSCBEEEEEEECSCHHHHHHHHHHTTCEEEECTTSSS-STTCEEEE
T ss_pred             cccccc----------Cc--Cc------c-CCCCCccceeEEEeeHHHHHHHHHHHHHCCCEEeeCCccCC-ceEEEEEE
Confidence            100000          00  00      0 00112 38899999999999999999999999887775432 23345678


Q ss_pred             ecCCeEEEEeec
Q 013898          167 LYGDVVLRYVSY  178 (434)
Q Consensus       167 ~~Gg~~~~fvd~  178 (434)
                      ++.|..++++++
T Consensus       158 DPdG~~IElvq~  169 (176)
T d1qipa_         158 DPDGYWIEILNP  169 (176)
T ss_dssp             CTTCCEEEEECT
T ss_pred             CCCCCEEEEEeC
Confidence            888888999885

>d1zswa2 d.32.1.10 (A:145-314) Hypothetical protein BC1024 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: BC1024-like
domain: Hypothetical protein BC1024
species: Bacillus cereus [TaxId: 1396]

Probab=98.86  E-value=2.2e-08  Score=87.59  Aligned_cols=92  Identities=16%  Similarity=0.207  Sum_probs=63.4

Q ss_pred             CCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEe--CC--EEEEEEcCCCCCCCcccccCCCC
Q 013898           28 FRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRS--GD--LRFVFTAPYSPSISDAADAGNSS  103 (434)
Q Consensus        28 ~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~--G~--i~~vl~~p~~~~~~~~~~~~~~~  103 (434)
                      ..|.||+||.|.|+|++++++||++.|||+++.+.+  .      ..+++.  ++  ..+.+..+..+.           
T Consensus         8 ~~I~Gl~HV~L~V~Dle~s~~FY~~vLG~~~~~~~~--~------~~~~~~~~~~~~~~~~~~~~~~~~-----------   68 (170)
T d1zswa2           8 HQIQGMGSVELTVRRLDKMASTLTEIFGYTEVSRND--Q------EAIFQSIKGEAFGEIVVKYLDGPT-----------   68 (170)
T ss_dssp             GSCCEEEEEEEEESCHHHHHHHHHHTTCCEEEEECS--S------EEEEESSTTCSTTCEEEEECCSSB-----------
T ss_pred             HHhCCeeeEEEEeCCHHHHHHHHHHHhCCEEEeecC--c------eEEEEeccCccceEEEeccccccc-----------
Confidence            368999999999999999999999999999998743  1      122222  21  112222211110           


Q ss_pred             CCCCCCChhHHhHHHHhcCC-ceeEEEEEecC---HHHHHHHHHHcCCCCCCCCc
Q 013898          104 ASLPTFDHAACRSFAASHGL-AARSIAVEVED---ADVAFNTSVAHGAKPSSPPV  154 (434)
Q Consensus       104 ~~~~~~~~~~~~~~l~~hG~-gv~~Iaf~V~D---vd~a~~ra~~~Ga~~~~~p~  154 (434)
                                     ...+. ++.||||+|+|   ++++.+++.+.|+++ .++.
T Consensus        69 ---------------~~~~~~~l~HiAf~V~~~~~l~~~~~~l~~~G~~~-~~~~  107 (170)
T d1zswa2          69 ---------------EKPGRGSIHHLAIRVKNDAELAYWEEQVKQRGFHS-SGII  107 (170)
T ss_dssp             ---------------CBCCBTCEEEEEEEESSHHHHHHHHHHHHHTTCCC-CCCE
T ss_pred             ---------------cccCccccceEEEEeCChHHHHHHHHHHHhcCCCc-cccc
Confidence                           12233 68899999986   789999999999975 4443

>d1mpya1 d.32.1.3 (A:1-145) Catechol 2,3-dioxygenase (metapyrocatechase) {Pseudomonas putida, mt2 [TaxId: 303]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: Catechol 2,3-dioxygenase (metapyrocatechase)
species: Pseudomonas putida, mt2 [TaxId: 303]

Probab=98.86  E-value=5.8e-09  Score=88.05  Aligned_cols=115  Identities=14%  Similarity=0.179  Sum_probs=73.8

Q ss_pred             ceeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCC-CceEEEecccCCCCCCCchHHHHH
Q 013898          205 GIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANND-EMVLLPMNEPVFGTKRKSQIQTYL  283 (434)
Q Consensus       205 ~l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~-g~v~i~L~e~~~g~~~~s~i~~fl  283 (434)
                      ++.+|+||++.|+|++++.+||+++|||+......   ..     .. ....... ....+.+...              
T Consensus         4 ~i~rl~Hv~l~v~D~~~s~~FY~~vLG~~~~~~~~---~~-----~~-~~~~~~~~~~~~~~~~~~--------------   60 (145)
T d1mpya1           4 GVMRPGHVQLRVLDMSKALEHYVELLGLIEMDRDD---QG-----RV-YLKAWTEVDKFSLVLREA--------------   60 (145)
T ss_dssp             SEEEEEEEEEEESCHHHHHHHHHHTTCCEEEEECT---TS-----CE-EEECTTCCBSCSEEEEEC--------------
T ss_pred             CCcEeeeEEEEeCCHHHHHHHHHHhhCCEEEEeec---cC-----cc-ceecccccceeecccccc--------------
Confidence            58999999999999999999999999999876521   10     11 1111111 1111111111              


Q ss_pred             hhcCCCCceEEEEEe---CCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCc
Q 013898          284 EHNEGAGVQHLALVS---EDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQG  360 (434)
Q Consensus       284 ~~~~G~GvqHIAf~v---dDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g  360 (434)
                         ..++.+|++|.+   +||++..++|+++    |+.+...| ...      ..+            ...-+|-+|++|
T Consensus        61 ---~~~~~~~~~~~~~~~~dl~~~~~~L~~~----g~~~~~~~-~~~------~~g------------~~~~~~f~DPdG  114 (145)
T d1mpya1          61 ---DEPGMDFMGFKVVDEDALRQLERDLMAY----GCAVEQLP-AGE------LNS------------CGRRVRFQAPSG  114 (145)
T ss_dssp             ---SSCEEEEEEEEESCHHHHHHHHHHHHHH----TCCCEEEC-TTS------STT------------BCCEEEEECTTS
T ss_pred             ---CcccceeeeeeehhHHHHHHHHHHHHHC----CCcEEECC-Ccc------cCC------------ceEEEEEECCCC
Confidence               224566666655   5789999999999    99887554 210      001            012468899999


Q ss_pred             eEEEEEcc
Q 013898          361 TLLQIFTK  368 (434)
Q Consensus       361 ~llqifT~  368 (434)
                      +.+.+|+.
T Consensus       115 ~~iEl~~~  122 (145)
T d1mpya1         115 HHFELYAD  122 (145)
T ss_dssp             CEEEEESC
T ss_pred             CEEEEEEe
Confidence            99999863

>d1nkia_ d.32.1.2 (A:) Fosfomycin resistance protein A (FosA) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Antibiotic resistance proteins
domain: Fosfomycin resistance protein A (FosA)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.85  E-value=1.9e-08  Score=83.66  Aligned_cols=90  Identities=16%  Similarity=0.139  Sum_probs=64.6

Q ss_pred             CcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCC
Q 013898           29 RVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPT  108 (434)
Q Consensus        29 ~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~  108 (434)
                      ++.+|+||.|.|+|++++.+||+++||+++..+.+        ....+..|+..+.........                
T Consensus         1 mi~~i~Hv~l~v~d~~~~~~FY~~~lG~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~----------------   56 (134)
T d1nkia_           1 MLTGLNHLTLAVADLPASIAFYRDLLGFRLEARWD--------QGAYLELGSLWLCLSREPQYG----------------   56 (134)
T ss_dssp             CEEEEEEEEEEESCHHHHHHHHHHTTCCEEEEEET--------TEEEEEETTEEEEEEECTTCC----------------
T ss_pred             CCCcEeEEEEEeCCHHHHHHHHHHhhCCeEEEecc--------ceeeeecCCeEEEEeeecccc----------------
Confidence            36899999999999999999999999999887754        134456677766655432211                


Q ss_pred             CChhHHhHHHHhcCCceeEEE--EEecCHHHHHHHHHHcCCCCCCCC
Q 013898          109 FDHAACRSFAASHGLAARSIA--VEVEDADVAFNTSVAHGAKPSSPP  153 (434)
Q Consensus       109 ~~~~~~~~~l~~hG~gv~~Ia--f~V~Dvd~a~~ra~~~Ga~~~~~p  153 (434)
                                 ..+.+..+++  +.++|++++++++.++|+++...+
T Consensus        57 -----------~~~~~~~h~~~~~~~~dl~~~~~~l~~~G~~~~~~~   92 (134)
T d1nkia_          57 -----------GPAADYTHYAFGIAAADFARFAAQLRAHGVREWKQN   92 (134)
T ss_dssp             -----------CCCSSSCEEEEEECHHHHHHHHHHHHHTTCCEEECC
T ss_pred             -----------ccccccccchhccccchHHHHHHHHHHCCCcCccCC
Confidence                       0122334445  555799999999999999865443

>d1f1ua1 d.32.1.3 (A:2-147) Homoprotocatechuate 2,3-dioxygenase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: Homoprotocatechuate 2,3-dioxygenase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=98.82  E-value=1.4e-08  Score=86.13  Aligned_cols=90  Identities=18%  Similarity=0.172  Sum_probs=64.4

Q ss_pred             CCCCCCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCC----EEEEEEcCCCCCCCccccc
Q 013898           24 KSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGD----LRFVFTAPYSPSISDAADA   99 (434)
Q Consensus        24 ~~~~~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~----i~~vl~~p~~~~~~~~~~~   99 (434)
                      ..+++.+++|+||.|+|+|++++++||+++|||+++.+.+        ....++..+    ..+.+..            
T Consensus         8 ~~p~~~i~rl~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~------------   67 (146)
T d1f1ua1           8 SVPAPDIVRCAYMEIVVTDLAKSREFYVDVLGLHVTEEDE--------NTIYLRSLEEFIHHNLVLRQ------------   67 (146)
T ss_dssp             SSCCCCEEEEEEEEEEESCHHHHHHHHTTTTCCEEEEECS--------SEEEEECTTCCSSCSEEEEE------------
T ss_pred             CCCCCCCcEEeEEEEEeCCHHHHHHHHHhccCcEEEeecC--------Cceeeecccccccceeeccc------------
Confidence            3356779999999999999999999999999999997643        112222211    0011110            


Q ss_pred             CCCCCCCCCCChhHHhHHHHhcCCceeEEEEEec---CHHHHHHHHHHcCCCCCCCC
Q 013898          100 GNSSASLPTFDHAACRSFAASHGLAARSIAVEVE---DADVAFNTSVAHGAKPSSPP  153 (434)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~l~~hG~gv~~Iaf~V~---Dvd~a~~ra~~~Ga~~~~~p  153 (434)
                                          ...+++.|+||.|.   |++++.++++++|+++...|
T Consensus        68 --------------------~~~~~~~h~~~~~~~~~dl~~~~~~l~~~G~~~~~~~  104 (146)
T d1f1ua1          68 --------------------GPIAAVAAFAYRVKSPAEVDAAEAYYKELGCRTERRK  104 (146)
T ss_dssp             --------------------CSSCEEEEEEEEESSHHHHHHHHHHHHHTTCCEEEET
T ss_pred             --------------------cCCCCCceeeEeeccchhHHHHHHHHHHcCCceeecc
Confidence                                11247889999997   68999999999999875444

>d1mpya2 d.32.1.3 (A:146-307) Catechol 2,3-dioxygenase (metapyrocatechase) {Pseudomonas putida, mt2 [TaxId: 303]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: Catechol 2,3-dioxygenase (metapyrocatechase)
species: Pseudomonas putida, mt2 [TaxId: 303]

Probab=98.77  E-value=3.5e-08  Score=85.29  Aligned_cols=117  Identities=11%  Similarity=0.021  Sum_probs=74.1

Q ss_pred             CCcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEE--EEEEcCCCCCCCcccccCCCCCC
Q 013898           28 FRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLR--FVFTAPYSPSISDAADAGNSSAS  105 (434)
Q Consensus        28 ~~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~--~vl~~p~~~~~~~~~~~~~~~~~  105 (434)
                      |..++++||.|+|+|++++++||+++|||+++.+...+.+  ......+..+...  ..+..                  
T Consensus         1 m~~~rldHv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~------------------   60 (162)
T d1mpya2           1 MAAVRFDHALMYGDELPATYDLFTKVLGFYLAEQVLDENG--TRVAQFLSLSTKAHDVAFIH------------------   60 (162)
T ss_dssp             TCCCEEEEEEEEESCHHHHHHHHHHTTCCEEEEEEECTTC--CEEEEEEESSSBSCSEEEEE------------------
T ss_pred             CCcccccEEEEECCCHHHHHHHHHHccCCEEEEEEccccc--cceeeeeecccccccccccc------------------
Confidence            3568899999999999999999999999998866442222  1222333322211  11110                  


Q ss_pred             CCCCChhHHhHHHHhcCCceeEEEEEecCHH---HHHHHHHHcCCCCCCCCccc-cCceEEEEEEecCCeEEEEee
Q 013898          106 LPTFDHAACRSFAASHGLAARSIAVEVEDAD---VAFNTSVAHGAKPSSPPVIL-DNLAVIAEVQLYGDVVLRYVS  177 (434)
Q Consensus       106 ~~~~~~~~~~~~l~~hG~gv~~Iaf~V~Dvd---~a~~ra~~~Ga~~~~~p~~~-~~~~~~~~i~~~Gg~~~~fvd  177 (434)
                                   .....++.|++|.+.+.+   ++++++++.|+.....|... .+.....-++.++|..++|..
T Consensus        61 -------------~~~~~~~~h~~~~~~~~~~~~~~~~~L~~~gv~~~~~p~~~~~g~~~~~y~~DPdGn~iEl~~  123 (162)
T d1mpya2          61 -------------HPEKGRLHHVSFHLETWEDLLRAADLISMTDTSIDIGPTRHGLTHGKTIYFFDPSGNRNEVFC  123 (162)
T ss_dssp             -------------CSSSSEEEEEEEECSCHHHHHHHHHHHHHHTCCEEEEEEECSSTTCEEEEEECTTSCEEEEEE
T ss_pred             -------------cCCCCccceeEEEEeeehhhhhHHHHHHHcCCccccCccccCCCCeEEEEEECCCCCEEEEEE
Confidence                         012246889999998754   78899999998765555432 122334445666666666654

>d1klla_ d.32.1.2 (A:) Mitomycin resistance protein D, MRD {Streptomyces lavendulae [TaxId: 1914]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Antibiotic resistance proteins
domain: Mitomycin resistance protein D, MRD
species: Streptomyces lavendulae [TaxId: 1914]

Probab=98.72  E-value=3.6e-09  Score=87.47  Aligned_cols=120  Identities=18%  Similarity=0.135  Sum_probs=71.0

Q ss_pred             eEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCCh
Q 013898           32 RFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDH  111 (434)
Q Consensus        32 ~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~  111 (434)
                      +|+||.+.|+|++++++||++ |||........     .........+.+.+.+.......                   
T Consensus         2 ri~hv~l~V~D~~~s~~FY~~-Lg~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-------------------   56 (128)
T d1klla_           2 RISLFAVVVEDMAKSMEFYRK-MGVEIPAEADS-----APHTEAVLDGGIRLAWDTVETVR-------------------   56 (128)
T ss_dssp             CCCEEEEEESCHHHHHHHHHH-TTCCCCTTGGG-----CSEEEEECGGGCEEEEEEHHHHH-------------------
T ss_pred             eEeEEEEEcCCHHHHHHHHHH-hCCcccccccc-----ccceeeeccceeeeeeccccccc-------------------
Confidence            689999999999999999965 99987654321     12234444566666654311000                   


Q ss_pred             hHHhHHHHhcCCceeEEEEEecC---HHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEe
Q 013898          112 AACRSFAASHGLAARSIAVEVED---ADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYV  176 (434)
Q Consensus       112 ~~~~~~l~~hG~gv~~Iaf~V~D---vd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fv  176 (434)
                      ..........+.+-.+++|.|+|   +++++++++++|++.+.+|.......+...++++.|..+.|.
T Consensus        57 ~~~~~~~~~~~~~~~~l~~~v~~~~~l~~~~~~l~~~G~~~~~~p~~~~~G~~~~~~~DPdG~~iel~  124 (128)
T d1klla_          57 SYDPEWQAPTGGHRFAIAFEFPDTASVDKKYAELVDAGYEGHLKPWNAVWGQRYAIVKDPDGNVVDLF  124 (128)
T ss_dssp             HHCTTCCCCCSSCSCEEEEECSSHHHHHHHHHHHHHTTCEEEEEEEECTTSEEEEEEECTTSCEEEEE
T ss_pred             ccCCCCCCCccccceeEeeeeccchhhHHHHHHHHhccCccccCCeEcCCCcEEEEEECCCCCEEEEE
Confidence            00000000111244589999987   677999999999998777755422233333444444444443

>d2pjsa1 d.32.1.2 (A:3-113) Uncharacterized protein Atu1953 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Antibiotic resistance proteins
domain: Uncharacterized protein Atu1953
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.72  E-value=1.9e-08  Score=80.29  Aligned_cols=109  Identities=23%  Similarity=0.230  Sum_probs=72.2

Q ss_pred             eeeeeeeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCc-eEEEecccCCCCCCCchHHHHHh
Q 013898          206 IRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEM-VLLPMNEPVFGTKRKSQIQTYLE  284 (434)
Q Consensus       206 l~~iDHv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~-v~i~L~e~~~g~~~~s~i~~fl~  284 (434)
                      +++| +..+.|.|++++.+||+++|||+..+..+  .       .  ..+..++.. ..+......              
T Consensus         1 v~ri-~~~l~v~d~~~a~~FY~~~lG~~~~~~~~--~-------~--~~~~~~~~~~~~~~~~~~~--------------   54 (111)
T d2pjsa1           1 VRRV-VANIATPEPARAQAFYGDILGMPVAMDHG--W-------I--VTHASPLEAHAQVSFAREG--------------   54 (111)
T ss_dssp             EEEE-EEEEECSCGGGGHHHHTTTTCCCEEEECS--S-------E--EEEEEEEEEEEEEEEESSS--------------
T ss_pred             CeEE-EEEEEeCCHHHHHHHHHHhhCCceeeccc--c-------e--eEeccccccceeeeccccc--------------
Confidence            3566 68899999999999999999999876532  1       1  112111122 222222211              


Q ss_pred             hcCCCCceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEE
Q 013898          285 HNEGAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQ  364 (434)
Q Consensus       285 ~~~G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llq  364 (434)
                       ..+.+..|++|.++|+++..++|++.    |++++..| ...      ..             ....++-+|++|++++
T Consensus        55 -~~~~~~~~~~~~~~dvd~~~~~l~~~----g~~~~~~p-~~~------~~-------------g~~~~~~~DP~Gn~ie  109 (111)
T d2pjsa1          55 -GSGTDVPDLSIEVDNFDEVHARILKA----GLPIEYGP-VTE------AW-------------GVQRLFLRDPFGKLIN  109 (111)
T ss_dssp             -BTTBCCCSEEEEESCHHHHHHHHHHT----TCCCSEEE-EEC------TT-------------SCEEEEEECTTSCEEE
T ss_pred             -CCCCceeEEEEEecCHHHHHHHHHhh----ccccccCC-eEc------CC-------------CcEEEEEECCCCCEEE
Confidence             12345679999999999999999999    99988643 320      01             1125577899999988


Q ss_pred             E
Q 013898          365 I  365 (434)
Q Consensus       365 i  365 (434)
                      |
T Consensus       110 i  110 (111)
T d2pjsa1         110 I  110 (111)
T ss_dssp             E
T ss_pred             e
Confidence            6

>d1kw3b2 d.32.1.3 (B:133-288) 2,3-Dihydroxybiphenyl dioxygenase (DHBD, BPHC enzyme) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 2,3-Dihydroxybiphenyl dioxygenase (DHBD, BPHC enzyme)
species: Pseudomonas sp. [TaxId: 306]

Probab=98.55  E-value=1.6e-07  Score=80.74  Aligned_cols=91  Identities=14%  Similarity=0.122  Sum_probs=57.2

Q ss_pred             cceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCC-ceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCC
Q 013898           30 VNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTG-NTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPT  108 (434)
Q Consensus        30 i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g-~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~  108 (434)
                      ..||+||.|.|+|++++.+||+++|||+++.+.....+ ........++.+.....+..                     
T Consensus         8 ~~GlgHv~l~v~D~e~t~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~a~---------------------   66 (156)
T d1kw3b2           8 DQGIGHFVRCVPDTAKAMAFYTEVLGFVLSDIIDIQMGPETSVPAHFLHCNGRHHTIAL---------------------   66 (156)
T ss_dssp             GGCSCEEEEECSCHHHHHHHHHHTTCCEEEEEEEEEEETTEEEEEEEEESSSBSCSEEE---------------------
T ss_pred             CCCcceEEEecCCHHHHHHHHHHhcCceeeeEEeeccCCCCcceeEEEeeccccceeee---------------------
Confidence            47999999999999999999999999998765321110 00111222222221000000                     


Q ss_pred             CChhHHhHHHHhcCCceeEEEEEecC---HHHHHHHHHHcCCCC
Q 013898          109 FDHAACRSFAASHGLAARSIAVEVED---ADVAFNTSVAHGAKP  149 (434)
Q Consensus       109 ~~~~~~~~~l~~hG~gv~~Iaf~V~D---vd~a~~ra~~~Ga~~  149 (434)
                              .......++.||||+|++   +.+++++++++|..+
T Consensus        67 --------~~~~~~~gl~Hiaf~v~~~ddv~~~~d~l~~~G~~~  102 (156)
T d1kw3b2          67 --------AAFPIPKRIHHFMLQANTIDDVGYAFDRLDAAGRIT  102 (156)
T ss_dssp             --------ECCSCSSSEEEEEEEBSSHHHHHHHHHHHHHTTCBC
T ss_pred             --------ccCCCCCceeEEEEECCCHHHHHHHHHHHHhcCCce
Confidence                    000112489999999975   566889999999764

>d1twua_ d.32.1.8 (A:) Hypothetical protein YycE {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Hypothetical protein YycE
domain: Hypothetical protein YycE
species: Bacillus subtilis [TaxId: 1423]

Probab=98.54  E-value=8.6e-08  Score=80.08  Aligned_cols=119  Identities=9%  Similarity=0.020  Sum_probs=71.5

Q ss_pred             cceEEEEEEE----eCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCC--EEEEEEcCCCCCCCcccccCCCC
Q 013898           30 VNRFHHVEFW----CTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGD--LRFVFTAPYSPSISDAADAGNSS  103 (434)
Q Consensus        30 i~~l~HI~~~----V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~--i~~vl~~p~~~~~~~~~~~~~~~  103 (434)
                      +.+|.|+.+.    |+|++++++||+++|||+++.+...+.+   .....+..++  ..+.+........          
T Consensus         3 ~~~~~~~~~RVa~pv~Dle~s~~FY~~vLG~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~----------   69 (137)
T d1twua_           3 FSSFQAAQIRIARPTGQLDEIIRFYEEGLCLKRIGEFSQHNG---YDGVMFGLPHADYHLEFTQYEGGST----------   69 (137)
T ss_dssp             CSSCBCSCEEEEEECSCHHHHHHHHTTTSCCCEEEEEEEETT---EEEEEEESSSSSEEEEEEEETTCCC----------
T ss_pred             cCCCceEEEEEecccCCHHHHHHHHHhccCCceeeeeccccc---eeEEEecCCCCceeeeccccccccc----------
Confidence            3445555555    5799999999999999999876532222   2334444443  3444433211100          


Q ss_pred             CCCCCCChhHHhHHHHhcCCceeEEEEEecC---HHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEee
Q 013898          104 ASLPTFDHAACRSFAASHGLAARSIAVEVED---ADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVS  177 (434)
Q Consensus       104 ~~~~~~~~~~~~~~l~~hG~gv~~Iaf~V~D---vd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd  177 (434)
                                     ...+.+..|++|.|+|   ++++++++.+.|++++.++... .......++.++|..++|.+
T Consensus        70 ---------------~~~~~~~~hlaf~v~~~~dv~~~~~~l~~~G~~~~~~~~~~-~~~~~~~f~DPDG~~Iel~~  130 (137)
T d1twua_          70 ---------------APVPHPDSLLVFYVPNAVELAAITSKLKHMGYQEVESENPY-WSNGGVTIEDPDGWRIVFMN  130 (137)
T ss_dssp             ---------------CCCCCTTCEEEEECCCHHHHHHHHHHHHHTTCCEECCSSHH-HHSSEEEEECTTCCEEEEES
T ss_pred             ---------------ccccccCceEEEEeCCHHHHHHHHHHHHHCCCeEeCCCCCC-CCceEEEEECCCCCEEEEEc
Confidence                           0112245689998876   7889999999999977655322 11222345666666666665

>d1mpya1 d.32.1.3 (A:1-145) Catechol 2,3-dioxygenase (metapyrocatechase) {Pseudomonas putida, mt2 [TaxId: 303]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: Catechol 2,3-dioxygenase (metapyrocatechase)
species: Pseudomonas putida, mt2 [TaxId: 303]

Probab=98.53  E-value=6.8e-08  Score=81.20  Aligned_cols=110  Identities=15%  Similarity=0.138  Sum_probs=69.1

Q ss_pred             CcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCC----EEEEEEcCCCCCCCcccccCCCCC
Q 013898           29 RVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGD----LRFVFTAPYSPSISDAADAGNSSA  104 (434)
Q Consensus        29 ~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~----i~~vl~~p~~~~~~~~~~~~~~~~  104 (434)
                      .|++|+||.|.|+|++++.+||++.|||+++.+..  .+     .......+    ..+.+..                 
T Consensus         4 ~i~rl~Hv~l~v~D~~~s~~FY~~vLG~~~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~-----------------   59 (145)
T d1mpya1           4 GVMRPGHVQLRVLDMSKALEHYVELLGLIEMDRDD--QG-----RVYLKAWTEVDKFSLVLRE-----------------   59 (145)
T ss_dssp             SEEEEEEEEEEESCHHHHHHHHHHTTCCEEEEECT--TS-----CEEEECTTCCBSCSEEEEE-----------------
T ss_pred             CCcEeeeEEEEeCCHHHHHHHHHHhhCCEEEEeec--cC-----ccceecccccceeeccccc-----------------
Confidence            48999999999999999999999999999887643  11     11222211    1111111                 


Q ss_pred             CCCCCChhHHhHHHHhcCCceeEEEEE---ecCHHHHHHHHHHcCCCCCCCCcc-ccCceEEEEEEecCCeEEEEee
Q 013898          105 SLPTFDHAACRSFAASHGLAARSIAVE---VEDADVAFNTSVAHGAKPSSPPVI-LDNLAVIAEVQLYGDVVLRYVS  177 (434)
Q Consensus       105 ~~~~~~~~~~~~~l~~hG~gv~~Iaf~---V~Dvd~a~~ra~~~Ga~~~~~p~~-~~~~~~~~~i~~~Gg~~~~fvd  177 (434)
                                     ...++..+++|.   ++|+++++++++++|+++...|.. ..+......++++.|..++|..
T Consensus        60 ---------------~~~~~~~~~~~~~~~~~dl~~~~~~L~~~g~~~~~~~~~~~~g~~~~~~f~DPdG~~iEl~~  121 (145)
T d1mpya1          60 ---------------ADEPGMDFMGFKVVDEDALRQLERDLMAYGCAVEQLPAGELNSCGRRVRFQAPSGHHFELYA  121 (145)
T ss_dssp             ---------------CSSCEEEEEEEEESCHHHHHHHHHHHHHHTCCCEEECTTSSTTBCCEEEEECTTSCEEEEES
T ss_pred             ---------------cCcccceeeeeeehhHHHHHHHHHHHHHCCCcEEECCCcccCCceEEEEEECCCCCEEEEEE
Confidence                           011244455554   557899999999999987544432 1122233445667777777764

>d1xy7a_ d.32.1.9 (A:) Hypothetical protein At5g48480 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Hypothetical protein At5g48480
domain: Hypothetical protein At5g48480
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.45  E-value=5.3e-07  Score=74.79  Aligned_cols=112  Identities=14%  Similarity=0.015  Sum_probs=69.8

Q ss_pred             EEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCc-----eeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCC
Q 013898           35 HVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGN-----TVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTF  109 (434)
Q Consensus        35 HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~-----~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~  109 (434)
                      ++-+.|+|+++|++||+++|||+++.+...+.+.     .......++.|+..+.+......... .        +    
T Consensus        10 ~l~v~~~~~~eAi~FY~~~fG~~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~-~--------~----   76 (135)
T d1xy7a_          10 MLLVEAQKVGDAVTFYKSAFGAIESGHSLYPKRKLDQELPHVLSSELNLAGSSFVVCDVSSLPGF-S--------T----   76 (135)
T ss_dssp             EEEECTTCHHHHHHHHHHHHCCEEC---------------CCCEEEEEETTEEEEEEEGGGSTTC-C--------C----
T ss_pred             EEEEECCCHHHHHHHHHHHhCCEEEEEEecCCccccccCCcEEEEEEEECCeeeecccccccccc-c--------c----
Confidence            4556677999999999999999987654321111     11223456778877777543211000 0        0    


Q ss_pred             ChhHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEeec
Q 013898          110 DHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSY  178 (434)
Q Consensus       110 ~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd~  178 (434)
                              ....+.+ .+|++.|+|+++++.++.+.|++++.+|...          +||.....+.|+
T Consensus        77 --------~~~~~~~-~~l~~~v~d~~~~~~~~~~~g~~~~~~~~~~----------~~g~~~~~v~Dp  126 (135)
T d1xy7a_          77 --------AKSEGSG-VTFLLGTKDAEAAVAKAVDAGAVKVEVTEAE----------VELGFKGKVTDP  126 (135)
T ss_dssp             --------CCTTSCC-CEEEEECSCHHHHHHHHHHTTCEECCCCHHH----------HHTTEEEEEECT
T ss_pred             --------CCCCCcc-eEEEEeecCcceeEEEeecccceEecCcccc----------cccCEEEEEECC
Confidence                    0112233 4899999999999999999999998887654          356655666664

>d2c21a1 d.32.1.1 (A:3-141) Glyoxalase I (lactoylglutathione lyase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Glyoxalase I (lactoylglutathione lyase)
domain: Glyoxalase I (lactoylglutathione lyase)
species: Leishmania major [TaxId: 5664]

Probab=98.42  E-value=3.9e-07  Score=74.38  Aligned_cols=118  Identities=17%  Similarity=0.096  Sum_probs=73.9

Q ss_pred             ceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCC---EEEEEEcCCCCCCCcccccCCCCCCCC
Q 013898           31 NRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGD---LRFVFTAPYSPSISDAADAGNSSASLP  107 (434)
Q Consensus        31 ~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~---i~~vl~~p~~~~~~~~~~~~~~~~~~~  107 (434)
                      .+++||.|.|+|++++++||++.|||++..+......  .........+.   ...........                
T Consensus         2 ~r~~Hv~l~V~Dl~~s~~FY~~~LG~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~----------------   63 (139)
T d2c21a1           2 RRMLHTMIRVGDLDRSIKFYTERLGMKVLRKWDVPED--KYTLVFLGYGPEMSSTVLELTYNYG----------------   63 (139)
T ss_dssp             CEEEEEEEECSCHHHHHHHHHHTTCCEEEEEEEEGGG--TEEEEEEESSCTTTSCEEEEEEETT----------------
T ss_pred             CceEEEEEEeCCHHHHHHHHHHHhCCEeecccccccc--ceeeeeecccccccccccccccccC----------------
Confidence            5799999999999999999999999999876532121  11112222111   11110000000                


Q ss_pred             CCChhHHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEeec
Q 013898          108 TFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSY  178 (434)
Q Consensus       108 ~~~~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd~  178 (434)
                              ......+.+..++++.++++.++++++...+.+....+.    ......++.++|..++|++.
T Consensus        64 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~~~~~DPdGn~iEl~~~  122 (139)
T d2c21a1          64 --------VTSYKHDEAYGHIAIGVEDVKELVADMRKHDVPIDYEDE----SGFMAFVVDPDGYYIELLNE  122 (139)
T ss_dssp             --------CCCCCCCSSEEEEEEEESCHHHHHHHHHHTTCCEEEECS----SSSEEEEECTTSCEEEEEEH
T ss_pred             --------cccccCCCccceeeeehhhHHHHHHHHHHcCCceeeCCC----CcEEEEEECCCCCEEEEEEC
Confidence                    000112346678999999999999999999887544332    22345577888888888874

>d1jifa_ d.32.1.2 (A:) Bleomycin resistance protein, BRP {Streptomyces verticillus [TaxId: 29309]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Antibiotic resistance proteins
domain: Bleomycin resistance protein, BRP
species: Streptomyces verticillus [TaxId: 29309]

Probab=98.40  E-value=1.8e-06  Score=69.62  Aligned_cols=105  Identities=11%  Similarity=-0.032  Sum_probs=71.8

Q ss_pred             EEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCChhHHhH
Q 013898           37 EFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHAACRS  116 (434)
Q Consensus        37 ~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (434)
                      .|.|+|++++++||++.|||++....+        ....+..|+..+.+......                         
T Consensus        10 vL~v~Dl~~s~~FY~~vLG~~~~~~~~--------~~~~~~~~~~~l~l~~~~~~-------------------------   56 (122)
T d1jifa_          10 VLTAVDVPANVSFWVDTLGFEKDFGDR--------DFAGVRRGDIRLHISRTEHQ-------------------------   56 (122)
T ss_dssp             EEEESSHHHHHHHHHHTTCCEEEEECS--------SEEEEEETTEEEEEEECSCH-------------------------
T ss_pred             EEEcCCHHHHHHHHHhhhCCceEecCC--------ceeEeeeeeeeeeeeccccc-------------------------
Confidence            489999999999999999999887643        23556778888887653210                         


Q ss_pred             HHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEeeccCcC
Q 013898          117 FAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSYKDKA  182 (434)
Q Consensus       117 ~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd~~~~~  182 (434)
                          ......++++.|.|++++.+++++.++.....+....   .-+.-..+|+..+++.|| +|+
T Consensus        57 ----~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~~DP-dGn  114 (122)
T d1jifa_          57 ----IVADNTSAWIEVTDPDALHEEWARAVSTDYADTSGPA---MTPVGESPAGREFAVRDP-AGN  114 (122)
T ss_dssp             ----HHHTTCEEEEEESCHHHHHHHHHTTSCSCTTCTTSCE---ECCCEEETTEEEEEEECT-TCC
T ss_pred             ----cccceeEEEEeechhHHHHHHHHhhcceEEeeccccc---cCccccCCCeEEEEEECC-CCC
Confidence                1112347899999999999999999988765543210   000112356667777774 553

>d1f1ua2 d.32.1.3 (A:148-323) Homoprotocatechuate 2,3-dioxygenase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: Homoprotocatechuate 2,3-dioxygenase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=98.30  E-value=2.8e-06  Score=74.19  Aligned_cols=86  Identities=13%  Similarity=0.098  Sum_probs=57.3

Q ss_pred             CcceEEEEEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCE--EEEEEcCCCCCCCcccccCCCCCCC
Q 013898           29 RVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDL--RFVFTAPYSPSISDAADAGNSSASL  106 (434)
Q Consensus        29 ~i~~l~HI~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i--~~vl~~p~~~~~~~~~~~~~~~~~~  106 (434)
                      .+++|+||.|.|+|++++++|| ++|||+++.+.....+.  .....++.+..  .+.+.                    
T Consensus         2 ~i~rl~Hv~l~v~Dle~s~~FY-e~LGf~~~d~~~~~~~~--~~~~~~~~~~~~~~l~~~--------------------   58 (176)
T d1f1ua2           2 ELVRLDHFNQVTPDVPRGRAYL-EDLGFRVSEDIKDSDGV--TYAAWMHRKQTVHDTALT--------------------   58 (176)
T ss_dssp             CCCEEEEEEEEESCHHHHHHHH-HHTTCEEEEEEECTTCC--EEEEEEESSSSSCSEEEE--------------------
T ss_pred             ceeEeeeEEEEcCCHHHHHHHH-HHCCCEEEEEEecCCcc--eeeeeeccCccccceecc--------------------
Confidence            3789999999999999999999 68999988665432321  22333333221  11111                    


Q ss_pred             CCCChhHHhHHHHhcCCceeEEEEEecCH---HHHHHHHHHcCCCC
Q 013898          107 PTFDHAACRSFAASHGLAARSIAVEVEDA---DVAFNTSVAHGAKP  149 (434)
Q Consensus       107 ~~~~~~~~~~~l~~hG~gv~~Iaf~V~Dv---d~a~~ra~~~Ga~~  149 (434)
                                  ...+.+..|++|.|.++   ..+.+++.++|+..
T Consensus        59 ------------~~~~~~~~H~~f~~~~~~~v~~~~~~l~~~g~~~   92 (176)
T d1f1ua2          59 ------------GGNGPRMHHVAFATHEKHNIIQICDKMGALRISD   92 (176)
T ss_dssp             ------------ESSBSEEEEEEEECSSHHHHHHHHHHHHHTTCGG
T ss_pred             ------------cccCCCccceeEEeccchhHHHHHHHHHHcCCce
Confidence                        11234788999999864   55667888888864

>d1ecsa_ d.32.1.2 (A:) Bleomycin resistance protein, BRP {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Antibiotic resistance proteins
domain: Bleomycin resistance protein, BRP
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.26  E-value=1.1e-05  Score=64.94  Aligned_cols=107  Identities=21%  Similarity=0.201  Sum_probs=69.3

Q ss_pred             EEE--EEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCChh
Q 013898           35 HVE--FWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHA  112 (434)
Q Consensus        35 HI~--~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~  112 (434)
                      |+.  |.|+|++++.+||++ |||++....+        ....+..++..+.+.......    |               
T Consensus         3 ~~~p~l~v~Dl~~s~~FY~~-LGf~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~----~---------------   54 (120)
T d1ecsa_           3 QATPNLPSRDFDSTAAFYER-LGFGIVFRDA--------GWMILQRGDLMLEFFAHPGLD----P---------------   54 (120)
T ss_dssp             EEEEEEEESCHHHHHHHHHT-TTCEEEEECS--------SEEEEEETTEEEEEEECTTCC----G---------------
T ss_pred             eEEEEEEeCCHHHHHHHHHH-cCCeeEEecC--------ceeeeecceeccccccccccc----c---------------
Confidence            555  999999999999986 9999887643        233445566666655422110    0               


Q ss_pred             HHhHHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEeeccCcC
Q 013898          113 ACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSYKDKA  182 (434)
Q Consensus       113 ~~~~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd~~~~~  182 (434)
                               ...-.++++.|+|++++++++++.|+.+...+...   ..-+.-++||...++|.|| +|+
T Consensus        55 ---------~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~G~r~~~~~DP-DGn  111 (120)
T d1ecsa_          55 ---------LASWFSCCLRLDDLAEFYRQCKSVGIQETSSGYPR---IHAPELQGWGGTMAALVDP-DGT  111 (120)
T ss_dssp             ---------GGCCCEEEEEESCHHHHHHHHHHTTCCBCSSSSSE---EEEEEECTTSSEEEEEECT-TSC
T ss_pred             ---------CCCCcEEEEEECCHHHHHHHHhhhhhhhccccccc---cccceecCCCcEEEEEECC-CCC
Confidence                     01223689999999999999999999876543221   1112223567766777774 553

>d1xy7a_ d.32.1.9 (A:) Hypothetical protein At5g48480 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Hypothetical protein At5g48480
domain: Hypothetical protein At5g48480
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.25  E-value=1.3e-05  Score=65.96  Aligned_cols=99  Identities=14%  Similarity=0.036  Sum_probs=54.1

Q ss_pred             eeeEecCCHHHHHHHHHHhhCCeeeeeeecccC--cccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcCC
Q 013898          211 HAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDV--GTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEG  288 (434)
Q Consensus       211 Hv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~--~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G  288 (434)
                      ++.+.|+|.+++++||+++||++........+.  ......+....+...+..+.+.-..+..+  ...      ....+
T Consensus        10 ~l~v~~~~~~eAi~FY~~~fG~~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~--~~~------~~~~~   81 (135)
T d1xy7a_          10 MLLVEAQKVGDAVTFYKSAFGAIESGHSLYPKRKLDQELPHVLSSELNLAGSSFVVCDVSSLPG--FST------AKSEG   81 (135)
T ss_dssp             EEEECTTCHHHHHHHHHHHHCCEEC---------------CCCEEEEEETTEEEEEEEGGGSTT--CCC------CCTTS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCEEEEEEecCCccccccCCcEEEEEEEECCeeeeccccccccc--ccc------CCCCC
Confidence            566778899999999999999997654321110  00011121222222222222222222110  000      01122


Q ss_pred             CCceEEEEEeCCHHHHHHHHHHhcCCCCceeccC
Q 013898          289 AGVQHLALVSEDIFRTLREMRKRSGVGGFEFMPS  322 (434)
Q Consensus       289 ~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~  322 (434)
                      . .-||++.|+|+++++.+++++    |++++..
T Consensus        82 ~-~~~l~~~v~d~~~~~~~~~~~----g~~~~~~  110 (135)
T d1xy7a_          82 S-GVTFLLGTKDAEAAVAKAVDA----GAVKVEV  110 (135)
T ss_dssp             C-CCEEEEECSCHHHHHHHHHHT----TCEECCC
T ss_pred             c-ceEEEEeecCcceeEEEeecc----cceEecC
Confidence            3 349999999999999999999    9999864

>d1ecsa_ d.32.1.2 (A:) Bleomycin resistance protein, BRP {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Antibiotic resistance proteins
domain: Bleomycin resistance protein, BRP
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.20  E-value=4.1e-06  Score=67.57  Aligned_cols=81  Identities=16%  Similarity=0.141  Sum_probs=54.1

Q ss_pred             eeee--EecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcC
Q 013898          210 DHAV--GNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNE  287 (434)
Q Consensus       210 DHv~--i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~  287 (434)
                      ||+.  +.|+|++++.+||++ |||+..+...    .     .  ..+...  ...+.+.....  ..           .
T Consensus         2 ~~~~p~l~v~Dl~~s~~FY~~-LGf~~~~~~~----~-----~--~~~~~~--~~~~~~~~~~~--~~-----------~   54 (120)
T d1ecsa_           2 DQATPNLPSRDFDSTAAFYER-LGFGIVFRDA----G-----W--MILQRG--DLMLEFFAHPG--LD-----------P   54 (120)
T ss_dssp             CEEEEEEEESCHHHHHHHHHT-TTCEEEEECS----S-----E--EEEEET--TEEEEEEECTT--CC-----------G
T ss_pred             CeEEEEEEeCCHHHHHHHHHH-cCCeeEEecC----c-----e--eeeecc--eeccccccccc--cc-----------c
Confidence            5776  788899999999987 9999887532    1     1  122222  23444433321  01           1


Q ss_pred             CCCceEEEEEeCCHHHHHHHHHHhcCCCCceecc
Q 013898          288 GAGVQHLALVSEDIFRTLREMRKRSGVGGFEFMP  321 (434)
Q Consensus       288 G~GvqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~  321 (434)
                      ...-.|+++.|+|++++.+.+++.    |+.+..
T Consensus        55 ~~~~~~~~~~~~d~~~~~~~~~~~----~~~~~~   84 (120)
T d1ecsa_          55 LASWFSCCLRLDDLAEFYRQCKSV----GIQETS   84 (120)
T ss_dssp             GGCCCEEEEEESCHHHHHHHHHHT----TCCBCS
T ss_pred             CCCCcEEEEEECCHHHHHHHHhhh----hhhhcc
Confidence            123568999999999999999998    877654

>d1jifa_ d.32.1.2 (A:) Bleomycin resistance protein, BRP {Streptomyces verticillus [TaxId: 29309]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Antibiotic resistance proteins
domain: Bleomycin resistance protein, BRP
species: Streptomyces verticillus [TaxId: 29309]

Probab=98.15  E-value=3.7e-06  Score=67.72  Aligned_cols=112  Identities=11%  Similarity=-0.003  Sum_probs=70.1

Q ss_pred             eEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcCCCCce
Q 013898          213 VGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAGVQ  292 (434)
Q Consensus       213 ~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G~Gvq  292 (434)
                      .+.|.|++++++||+++|||+..+...  +       .  .++..  +...+.+.....    .          ...+.+
T Consensus        10 vL~v~Dl~~s~~FY~~vLG~~~~~~~~--~-------~--~~~~~--~~~~l~l~~~~~----~----------~~~~~~   62 (122)
T d1jifa_          10 VLTAVDVPANVSFWVDTLGFEKDFGDR--D-------F--AGVRR--GDIRLHISRTEH----Q----------IVADNT   62 (122)
T ss_dssp             EEEESSHHHHHHHHHHTTCCEEEEECS--S-------E--EEEEE--TTEEEEEEECSC----H----------HHHTTC
T ss_pred             EEEcCCHHHHHHHHHhhhCCceEecCC--c-------e--eEeee--eeeeeeeecccc----c----------ccccee
Confidence            478999999999999999999876421  1       1  12222  335566655421    0          012367


Q ss_pred             EEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEEEEcc
Q 013898          293 HLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFTK  368 (434)
Q Consensus       293 HIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llqifT~  368 (434)
                      |+++.++||+...+++++.    ++.....+-...........             ....+|-+|++|++|.+.|.
T Consensus        63 ~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-------------g~~~~~~~DPdGn~ief~~~  121 (122)
T d1jifa_          63 SAWIEVTDPDALHEEWARA----VSTDYADTSGPAMTPVGESP-------------AGREFAVRDPAGNCVHFTAG  121 (122)
T ss_dssp             EEEEEESCHHHHHHHHHTT----SCSCTTCTTSCEECCCEEET-------------TEEEEEEECTTCCEEEEEEC
T ss_pred             EEEEeechhHHHHHHHHhh----cceEEeeccccccCccccCC-------------CeEEEEEECCCCCEEEEEeC
Confidence            9999999999999999998    76655432000000000000             11246888999999998764

>d1xrka_ d.32.1.2 (A:) Bleomycin resistance protein, BRP {Streptoalloteichus hindustanus [TaxId: 2017]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Antibiotic resistance proteins
domain: Bleomycin resistance protein, BRP
species: Streptoalloteichus hindustanus [TaxId: 2017]

Probab=97.98  E-value=1.9e-05  Score=62.83  Aligned_cols=114  Identities=11%  Similarity=0.022  Sum_probs=69.5

Q ss_pred             eeeEecCCHHHHHHHHHHhhCCeeeeeeecccCcccccCceEEEEEcCCCceEEEecccCCCCCCCchHHHHHhhcCCCC
Q 013898          211 HAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYLEHNEGAG  290 (434)
Q Consensus       211 Hv~i~V~dl~~~~~fY~~vLGf~~~~~~~~~d~~~~~~g~~s~~l~~~~g~v~i~L~e~~~g~~~~s~i~~fl~~~~G~G  290 (434)
                      +-.+.|+|++++++||+++|||+..+...  +         ...+..  +...+.+.....    .          ...+
T Consensus         7 ~pvL~v~D~~~s~~FY~~~LG~~~~~~~~--~---------~~~~~~--~~~~l~~~~~~~----~----------~~~~   59 (120)
T d1xrka_           7 VPVLTARDVAEAVEFWTDRLGFSRVFVED--D---------FAGVVR--DDVTLFISAVQD----Q----------VVPD   59 (120)
T ss_dssp             EEEEEESCHHHHHHHHHHTTCCEEEEECS--S---------EEEEEE--TTEEEEEEECSC----T----------TTGG
T ss_pred             EEEEEECCHHHHHHHHHHhhCCeEEEECC--C---------eeEEec--ccceeecccccc----c----------cCCC
Confidence            34588999999999999999999876532  1         112222  234455544321    1          2345


Q ss_pred             ceEEEEEeCCHHHHHHHHHHhcCCCCceeccCCCchhhHhHhhhcCCCCChhHHHHHHhcCeEEecCCCceEEEEEcc
Q 013898          291 VQHLALVSEDIFRTLREMRKRSGVGGFEFMPSPPPTYYKNLKNRAGDVLTDEQIKQCEELGVLVDRDDQGTLLQIFTK  368 (434)
Q Consensus       291 vqHIAf~vdDI~~av~~L~~~~~~~Gv~fl~~pP~~YY~~l~~R~~~~l~~~~~~~l~~~~iL~D~d~~g~llqifT~  368 (434)
                      ..++.+.++++......+.+.    +...+..+ ....      ... .....+    . ..+|-+|++|+++++|+.
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~------~~~-~~~~~~----g-~~~~~~DPdGn~ief~~e  120 (120)
T d1xrka_          60 NTQAWVWVRGLDELYAEWSEV----VSTNFRDA-SGPA------MTE-IVEQPW----G-REFALRDPAGNCVHFVAE  120 (120)
T ss_dssp             GCEEEEEEECHHHHHHHHTTT----SBSCTTTC-SSCE------ECC-CEEETT----E-EEEEEECTTCCEEEEEEC
T ss_pred             CceEEEeeccHHHHHHHHHHh----hhHHhhhc-cccc------ccC-ceecCC----E-EEEEEECCCCCEEEEEEC
Confidence            779999999999998888877    55554321 1100      000 000000    1 245778999999999863

>d1xrka_ d.32.1.2 (A:) Bleomycin resistance protein, BRP {Streptoalloteichus hindustanus [TaxId: 2017]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Antibiotic resistance proteins
domain: Bleomycin resistance protein, BRP
species: Streptoalloteichus hindustanus [TaxId: 2017]

Probab=97.88  E-value=0.00014  Score=57.51  Aligned_cols=106  Identities=10%  Similarity=-0.097  Sum_probs=68.7

Q ss_pred             EEEEeCCHHHHHHHHHHhcCCcEEEEecCCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCChhHHh
Q 013898           36 VEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHAACR  115 (434)
Q Consensus        36 I~~~V~da~~a~~fy~~~lGf~~v~~~~~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (434)
                      -.|.|+|++++++||++.|||+++.+.+        ....++.|+..+.+.......                       
T Consensus         8 pvL~v~D~~~s~~FY~~~LG~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~-----------------------   56 (120)
T d1xrka_           8 PVLTARDVAEAVEFWTDRLGFSRVFVED--------DFAGVVRDDVTLFISAVQDQV-----------------------   56 (120)
T ss_dssp             EEEEESCHHHHHHHHHHTTCCEEEEECS--------SEEEEEETTEEEEEEECSCTT-----------------------
T ss_pred             EEEEECCHHHHHHHHHHhhCCeEEEECC--------CeeEEecccceeecccccccc-----------------------
Confidence            3489999999999999999999887643        235566788888776532211                       


Q ss_pred             HHHHhcCCceeEEEEEecCHHHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEeeccCcC
Q 013898          116 SFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSYKDKA  182 (434)
Q Consensus       116 ~~l~~hG~gv~~Iaf~V~Dvd~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd~~~~~  182 (434)
                            ..+...+.+.+++++..+.++.+.+......+....  ..-+.-++ ++..+++.|| +|+
T Consensus        57 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~g~~~~~~DP-dGn  113 (120)
T d1xrka_          57 ------VPDNTQAWVWVRGLDELYAEWSEVVSTNFRDASGPA--MTEIVEQP-WGREFALRDP-AGN  113 (120)
T ss_dssp             ------TGGGCEEEEEEECHHHHHHHHTTTSBSCTTTCSSCE--ECCCEEET-TEEEEEEECT-TCC
T ss_pred             ------CCCCceEEEeeccHHHHHHHHHHhhhHHhhhccccc--ccCceecC-CEEEEEEECC-CCC
Confidence                  113346788999999999998888776554322110  00011123 3456777774 553

>d1u6la_ d.32.1.7 (A:) Hypothetical protein PA1353 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: 3-demethylubiquinone-9 3-methyltransferase
domain: Hypothetical protein PA1353
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.49  E-value=0.00091  Score=54.82  Aligned_cols=102  Identities=12%  Similarity=0.124  Sum_probs=63.9

Q ss_pred             CCHHHHHHHHHHhcCCcEEEEecCCCC----------ceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCC
Q 013898           41 TDATNTARRFSWGLGMPIVAKSDLSTG----------NTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFD  110 (434)
Q Consensus        41 ~da~~a~~fy~~~lGf~~v~~~~~~~g----------~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~  110 (434)
                      .|+++|++||+++|||+++........          ........++.++..+.+.......                  
T Consensus        12 g~a~eAl~FY~~~fG~e~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i~g~~~~~~d~~~~~------------------   73 (137)
T d1u6la_          12 GNCREAFSCYHQHLGGTLEAMLPFGDSPECGDIPADWKDKIMHARLVVGSFALMASDNHPAY------------------   73 (137)
T ss_dssp             SCHHHHHHHHHHHHCSEEEEEEESTTTTC----CCSSCCCEEEEEEEETTEEEEEEECCTTS------------------
T ss_pred             CCHHHHHHHHHHHCCCEEEEEEEcccCCccccCCCCCCCeEEEEEEEEcCeEEEecccCCcc------------------
Confidence            499999999999999998875421111          1122334466677777665421110                  


Q ss_pred             hhHHhHHHHhcCCceeEEEEEecCH--HHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEeec
Q 013898          111 HAACRSFAASHGLAARSIAVEVEDA--DVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSY  178 (434)
Q Consensus       111 ~~~~~~~l~~hG~gv~~Iaf~V~Dv--d~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd~  178 (434)
                              ...+.+-..+++.+++.  ++++.++.+.|++++.+|...          +||+..-.+.|+
T Consensus        74 --------~~~~~~~~~~~l~~~~~d~~~~~~~~l~~G~~v~~p~~~~----------~wG~~~g~v~Dp  125 (137)
T d1u6la_          74 --------PYEGIKGCSISLNVDSKAEAERLFNALAEGGSVQMPLGPT----------FWAASFGMFTDR  125 (137)
T ss_dssp             --------CCCCCCSEEEEEECSSHHHHHHHHHHHHTTSEEEEEEEEE----------TTEEEEEEEECT
T ss_pred             --------cccCCCcEEEEEEcCCHHHHHHHHhhcccCceeecCcccc----------CCCcEEEEEECC
Confidence                    01112334678887764  466888889999987776543          467666667764

>d1u7ia_ d.32.1.7 (A:) Hypothetical protein PA1358 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: 3-demethylubiquinone-9 3-methyltransferase
domain: Hypothetical protein PA1358
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.24  E-value=0.0033  Score=51.44  Aligned_cols=108  Identities=13%  Similarity=0.006  Sum_probs=65.8

Q ss_pred             EEEEEeCCHHHHHHHHHHhcCCcEEEEe---c--CCCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCC
Q 013898           35 HVEFWCTDATNTARRFSWGLGMPIVAKS---D--LSTGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTF  109 (434)
Q Consensus        35 HI~~~V~da~~a~~fy~~~lGf~~v~~~---~--~~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~  109 (434)
                      |+.|--.|+++|++||+++||++.+.+-   +  .+.....+....++.|+..|.+.......    +            
T Consensus         9 yL~f~g~~a~eAi~FY~~~Fg~~~v~~~~~~~~~~~~~~g~v~ha~l~i~~~~i~~~d~~~~~----~------------   72 (134)
T d1u7ia_           9 FLMFQGVQAEAAMNFYLSLFDDAEILQIQRYGAEGPGPEGSVLKALFRLGDQSVHCIDSHVRH----A------------   72 (134)
T ss_dssp             EEEEESSCHHHHHHHHHHHCSSEEEEEEEECCTTCSSCTTSEEEEEEEETTEEEEEEEESSCC----S------------
T ss_pred             EEEECCcCHHHHHHHHHHhCCCeEEEEEEEcCCCCCCCCCCEEEEEEEECCEEEEEecCCCCC----C------------
Confidence            5555556999999999999999876542   1  01111123345667899998887532111    0            


Q ss_pred             ChhHHhHHHHhcCCceeEEEEEecCH--HHHHHHHHHcCCCCCCCCccccCceEEEEEEecCCeEEEEeec
Q 013898          110 DHAACRSFAASHGLAARSIAVEVEDA--DVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSY  178 (434)
Q Consensus       110 ~~~~~~~~l~~hG~gv~~Iaf~V~Dv--d~a~~ra~~~Ga~~~~~p~~~~~~~~~~~i~~~Gg~~~~fvd~  178 (434)
                               ...+.+ ..+++.+++.  .+.+.++.+.|++++.++...          .||...-.+.|+
T Consensus        73 ---------~~~~~~-~s~~l~~~~~d~~~~~~~~l~~gg~v~~p~~~~----------~~g~~~g~v~D~  123 (134)
T d1u7ia_          73 ---------FDFTPA-FSFFVDCESNAQIERLAEALSDGGKALMPLGDY----------GFSQRFAWLADR  123 (134)
T ss_dssp             ---------CCCCTT-EEEEEECCCHHHHHHHHHHHHTTSEEEEEEECC----------SSSSEEEEEECT
T ss_pred             ---------CCCCCc-eEEEEEeccHHHHHHHHHHHhcCCEEecCcccc----------cccceEEEEECC
Confidence                     012233 3567777764  444667778899877665443          467766667664

>d1tsja_ d.32.1.7 (A:) Hypothetical protein MW1090 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: 3-demethylubiquinone-9 3-methyltransferase
domain: Hypothetical protein MW1090
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.89  E-value=0.046  Score=44.01  Aligned_cols=89  Identities=10%  Similarity=0.029  Sum_probs=50.3

Q ss_pred             EEEeC-CHHHHHHHHHHhcCCcEEEEe-cC----CCCceeEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCC
Q 013898           37 EFWCT-DATNTARRFSWGLGMPIVAKS-DL----STGNTVHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFD  110 (434)
Q Consensus        37 ~~~V~-da~~a~~fy~~~lGf~~v~~~-~~----~~g~~~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~  110 (434)
                      -|.+. |+++|++||+++||-..+.+. ..    +.....+....++.|+..|++.....                    
T Consensus         9 yl~f~g~a~eAi~FY~~vFg~~~v~~~~~~~~~~~~~~g~i~ha~l~i~g~~~~~~d~~~--------------------   68 (129)
T d1tsja_           9 FLMFNNQAEEAVKLYTSLFEDSEIITMAKYGENGPGDPGTVQHSIFTLNGQVFMAIDANS--------------------   68 (129)
T ss_dssp             EEECSSCHHHHHHHHHHHSSSCEEEEEEECC-----CTTSEEEEEEEETTEEEEEEC-----------------------
T ss_pred             EEEECCCHHHHHHHHHHHcCCcEEEEEEecCCCCCCCCCcEEEEEEEECCEEEEeecCCC--------------------
Confidence            34454 999999999999977555432 10    00011244566788999988865211                    


Q ss_pred             hhHHhHHHHhcCCceeEEEEEecCHHHH--HHHHHHcCCCCCCCCcc
Q 013898          111 HAACRSFAASHGLAARSIAVEVEDADVA--FNTSVAHGAKPSSPPVI  155 (434)
Q Consensus       111 ~~~~~~~l~~hG~gv~~Iaf~V~Dvd~a--~~ra~~~Ga~~~~~p~~  155 (434)
                               .++.+ ..+.+.+++.+++  +-++.+.|++++.++..
T Consensus        69 ---------~~~~~-~s~~v~~~~~~e~~~~~~~L~~gg~v~~p~~~  105 (129)
T d1tsja_          69 ---------GTELP-ISLFVTVKDTIEMERLFNGLKDEGAILMPKTN  105 (129)
T ss_dssp             -------------C-CCEEEECSSHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred             ---------CCCCC-EEEEeccCCHHHHHHHHHHhccCCEEeccccc
Confidence                     01112 2467788876654  33445567776665443

>d1u6la_ d.32.1.7 (A:) Hypothetical protein PA1353 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: 3-demethylubiquinone-9 3-methyltransferase
domain: Hypothetical protein PA1353
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.02  E-value=0.57  Score=37.04  Aligned_cols=21  Identities=14%  Similarity=-0.053  Sum_probs=18.7

Q ss_pred             CHHHHHHHHHHhhCCeeeeee
Q 013898          218 ELAPAVAYVKSFTGFHEFAEF  238 (434)
Q Consensus       218 dl~~~~~fY~~vLGf~~~~~~  238 (434)
                      +.+++++||+++||++.....
T Consensus        13 ~a~eAl~FY~~~fG~e~~~~~   33 (137)
T d1u6la_          13 NCREAFSCYHQHLGGTLEAML   33 (137)
T ss_dssp             CHHHHHHHHHHHHCSEEEEEE
T ss_pred             CHHHHHHHHHHHCCCEEEEEE
Confidence            899999999999999987544

>d1u69a_ d.32.1.7 (A:) Hypothetical protein PA2721 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: 3-demethylubiquinone-9 3-methyltransferase
domain: Hypothetical protein PA2721
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.80  E-value=2.8  Score=34.23  Aligned_cols=80  Identities=20%  Similarity=0.221  Sum_probs=47.9

Q ss_pred             EeCCHHHHHHHHHHhcCC-cEEEEe--c--CCCCce-eEEEEEEEeCCEEEEEEcCCCCCCCcccccCCCCCCCCCCChh
Q 013898           39 WCTDATNTARRFSWGLGM-PIVAKS--D--LSTGNT-VHASYLLRSGDLRFVFTAPYSPSISDAADAGNSSASLPTFDHA  112 (434)
Q Consensus        39 ~V~da~~a~~fy~~~lGf-~~v~~~--~--~~~g~~-~~~~~~l~~G~i~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~  112 (434)
                      +-.|+++|..||.++||= ++....  +  .+.+.. .+....++.|+..|+.+... +.                +   
T Consensus         9 F~Gna~EAl~FY~~vFg~~~i~~~~~~~~~~p~~~~~~Vmha~l~i~g~~lm~sD~~-~~----------------~---   68 (156)
T d1u69a_           9 YDSAALEAATFYAETFPDSAVLAVHRAPGDYPSGKEGDVLTVEFRVMGIPCLGLNGG-PA----------------F---   68 (156)
T ss_dssp             ESSCHHHHHHHHHHHSTTEEEEEEEECSSCBTTBCTTSEEEEEEEETTEEEEEEECC-TT----------------C---
T ss_pred             ECCcHHHHHHHHHHHcCCCEEeEEEecCCCCCCCCCCcEEEEEEEECCeEEEeecCC-CC----------------C---
Confidence            457999999999999954 333321  1  111111 13345567788888776521 11                0   


Q ss_pred             HHhHHHHhcCCceeEEEEEecC---HHHHHHHHHHcC
Q 013898          113 ACRSFAASHGLAARSIAVEVED---ADVAFNTSVAHG  146 (434)
Q Consensus       113 ~~~~~l~~hG~gv~~Iaf~V~D---vd~a~~ra~~~G  146 (434)
                             ..+.++ .|.+.++|   +++++++|.+.|
T Consensus        69 -------~~~~~~-sl~l~~d~~eE~d~~f~~LsegG   97 (156)
T d1u69a_          69 -------RHSEAF-SFQVATDDQAETDRLWNAIVDNG   97 (156)
T ss_dssp             -------CCCTTE-EEEEEESSHHHHHHHHHHHHHTT
T ss_pred             -------CCCCCe-EEEEecCCHHHHHHHHHHHhccC
Confidence                   133444 68888887   577777777766

>d1u7ia_ d.32.1.7 (A:) Hypothetical protein PA1358 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: 3-demethylubiquinone-9 3-methyltransferase
domain: Hypothetical protein PA1358
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.54  E-value=7.9  Score=30.04  Aligned_cols=27  Identities=11%  Similarity=-0.010  Sum_probs=20.8

Q ss_pred             eeeEecCCHHHHHHHHHHhhCCeeeee
Q 013898          211 HAVGNVPELAPAVAYVKSFTGFHEFAE  237 (434)
Q Consensus       211 Hv~i~V~dl~~~~~fY~~vLGf~~~~~  237 (434)
                      ++.++-.+.+++++||+++||.+....
T Consensus         9 yL~f~g~~a~eAi~FY~~~Fg~~~v~~   35 (134)
T d1u7ia_           9 FLMFQGVQAEAAMNFYLSLFDDAEILQ   35 (134)
T ss_dssp             EEEEESSCHHHHHHHHHHHCSSEEEEE
T ss_pred             EEEECCcCHHHHHHHHHHhCCCeEEEE
Confidence            445554589999999999999986543