Citrus Sinensis ID: 013910

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430----
Protein Sequence
MEEGRFSSLLHPDMCPKLLLEPLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKELVNTIDGVSNSKQVLVVA
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHcccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHcccccccccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHcccccHHHcHccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccHHccccccccccccccccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHEEEEEcHHHHHcccccccccEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcccEEEEEcccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccHHccccccHHHHHHHHccccEEEEc
Coil and Loop (DISEMBL)
meegrfssllhpdmcpkllleplyfIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLagaglgsghVFFSWFmefvppsnrgkwMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVfmpesprylctkgritdAHNILDKIAQfnqtslpsgnltsdgtndldeefstseetpllssarKRTTVRKSGFSSFLmlfsprffKTTILLWVLYFGNSFVYYGIVLLASelsgsqskcsssillsenvqdASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIanifapeiyptsmrstgAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKELVNtidgvsnskqvlvva
Flexible Loop (DISEMBL)
meegrfssllhpdmcPKLLLEPLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQfnqtslpsgnLTSDGTNDLDEefstseetpllssarkrttvrKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFetkgkelvntidgvsnskqvlvva
Low Complexity Region (SEG)
MEEGRFSSLLHPDMCPKLLLEPLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYisllilrglagaglgsgHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLAselsgsqskcsssillsENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTaailllealivlsvvvilliPFETKGKELVNTIDGVSNSKQVLVVA
Disordered region (IsUnstruct)
*********LHPDMCPKLLLEPLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQF*******************************************GFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELS*****CSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKELVNTIDGV**********
Disordered Region (DISOPRED)
***GRFSSLLHPDMCPKLLLEPLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDG*******************************SSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKELVNTIDGVSNSK******
Disordered Region (DISEMBL)
********LLHPDMCPKLLLEPLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTND***********************RKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASEL*********SILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKELVNTIDGVSNSKQVLVVA
Disordered Region (DISPRO)
*EEGRFSSLLHPDMCPKLLLEPLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLD************************GFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKELVNTIDGVSNSKQVLVVA
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEEGRFSSLLHPDMCPKLLLEPLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKELVNTIDGVSNSKQVLVVA
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	434	2.2.26 [Sep-21-2011]
Q940M4	500	Organic cation/carnitine	yes	no	0.891	0.774	0.503	3e-96
Q2XWK0	548	Synaptic vesicle 2-relate	N/A	no	0.808	0.640	0.353	3e-53
Q5R5T8	548	Synaptic vesicle 2-relate	yes	no	0.801	0.635	0.342	5e-51
Q8N4V2	548	Synaptic vesicle 2-relate	yes	no	0.801	0.635	0.342	6e-51
Q1JP63	548	Synaptic vesicle 2-relate	yes	no	0.811	0.642	0.338	6e-51
Q9Z2I7	548	Synaptic vesicle 2-relate	yes	no	0.806	0.638	0.342	2e-47
Q8BFT9	548	Synaptic vesicle 2-relate	yes	no	0.811	0.642	0.343	4e-47
P30638	520	Putative transporter ZK63	yes	no	0.804	0.671	0.318	2e-46
Q6PDF3	494	Putative transporter SVOP	no	no	0.817	0.718	0.289	3e-37
Q8N434	492	Putative transporter SVOP	no	no	0.824	0.727	0.281	2e-36

>sp|Q940M4|OCT7_ARATH Organic cation/carnitine transporter 7 OS=Arabidopsis thaliana GN=OCT7 PE=2 SV=1

 Score =  352 bits (903), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 203/403 (50%), Positives = 269/403 (66%), Gaps = 16/403 (3%)

Query: 38  ALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTF 97
           A+VTFVAG LSAFSPNY+ L+ILR L G GLG G V  SW++EF+P  +RG WMVVFS F
Sbjct: 97  AVVTFVAGFLSAFSPNYMWLIILRCLVGLGLGGGPVLASWYLEFIPAPSRGTWMVVFSAF 156

Query: 98  WTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHN 157
           WT G++ EA+LAW+VMP L WRWLLA S++P+ +LL+F  +  ESPRYL  +GR  +A  
Sbjct: 157 WTVGTIFEASLAWLVMPRLGWRWLLAFSSVPSSLLLLFYRWTSESPRYLILQGRKAEALA 216

Query: 158 ILDKIAQFNQTSLPSG-NLTSDGTNDLDEEFSTSEETPLLSSARKRTTV----------R 206
           IL+KIA+ N+T LP G   +   T   + +   +E T LL +      V          +
Sbjct: 217 ILEKIARMNKTQLPPGVLSSELETELEENKNIPTENTHLLKAGESGEAVAVSKIVLKADK 276

Query: 207 KSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENV 266
           + GF S L L SP   K T+LLWV++FGN+F YYG+VLL +EL+ S ++C  +     N 
Sbjct: 277 EPGF-SLLALLSPTLMKRTLLLWVVFFGNAFAYYGVVLLTTELNNSHNRCYPTEKQLRNS 335

Query: 267 QDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLT 326
            D + Y +VFI SFAE PGLL +A +VDR+GRK SM  M    CIFLLPL++ QS  + T
Sbjct: 336 NDVN-YRDVFIASFAEFPGLLISAAMVDRLGRKASMASMLFTCCIFLLPLLSHQSPFITT 394

Query: 327 ALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH 386
            LL G R+     F +  I+APEIYPT++R+TG GV  +VGRIGG++CPLVAVGLV  CH
Sbjct: 395 VLLFGGRICISAAFTVVYIYAPEIYPTAVRTTGVGVGSSVGRIGGILCPLVAVGLVHGCH 454

Query: 387 QTAAILLLEALIVLSVVVILLIPFETKGKELVNTIDGVSNSKQ 429
           QT A+LL E +I++S + + L PFET G++L    D +S SK+
Sbjct: 455 QTIAVLLFEVVILVSGICVCLFPFETSGRDLT---DSISASKE 494

High affinity carnitine transporter involved in the active cellular uptake of carnitine. Also transports organic cations.
Arabidopsis thaliana (taxid: 3702)

>sp|Q2XWK0|SVOP_XENLA Synaptic vesicle 2-related protein OS=Xenopus laevis GN=svop PE=2 SV=1

 Score =  209 bits (533), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 138/390 (35%), Positives = 195/390 (50%), Gaps = 39/390 (10%)

Query: 41  TFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTF 100
           T   G+LSAF+P Y  +L+LRGL G G+G      + + EF+P  +R K +++   FW  
Sbjct: 160 TLYYGILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKSRAKCILLIEIFWAL 219

Query: 101 GSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILD 160
           G+V E  LA  VMP L WRWLL LSA+P  +  I   ++PES RY    G    A   L 
Sbjct: 220 GTVFEVLLAIFVMPTLGWRWLLILSALPLMLFAILCFWLPESARYEVLSGNQEKALATLK 279

Query: 161 KIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPR 220
           +IA  N   +P G L                   ++S    R  +R         LFSP+
Sbjct: 280 RIATENGAPMPLGKL-------------------IVSRQEDRGKIRD--------LFSPQ 312

Query: 221 FFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSS---------ILLSENVQDASV 271
           F  TT+LLW ++F N+F YYG+VLL +EL  +   CS S           L+        
Sbjct: 313 FRCTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISNQRKAVKPKCSLACEYLTVED 372

Query: 272 YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSG 331
           Y ++  T+ +E PGLL    ++DRVGRK +M I FI      L L       +LT  L  
Sbjct: 373 YTDLLWTTLSEFPGLLVTLWIIDRVGRKKTMAICFIIFSFSALLLFLCVGRNVLTVFLFI 432

Query: 332 ARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA-VGLVTSCHQTAA 390
           AR F  G F  A ++ PE+YPT+ R+ G G    + R+G ++ P +A V L +S + T  
Sbjct: 433 ARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSIYLT-- 490

Query: 391 ILLLEALIVLSVVVILLIPFETKGKELVNT 420
           +L+     VL+ V    +P ETKG+ L  +
Sbjct: 491 VLVYSGCCVLAAVASCFLPIETKGRGLQES 520

Xenopus laevis (taxid: 8355)

>sp|Q5R5T8|SVOP_PONAB Synaptic vesicle 2-related protein OS=Pongo abelii GN=SVOP PE=2 SV=1

 Score =  202 bits (513), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 136/397 (34%), Positives = 202/397 (50%), Gaps = 49/397 (12%)

Query: 39  LVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFW 98
           L T   G+LSAF+P Y  +L+LRGL G G+G      + + EF+P   R K +++   FW
Sbjct: 158 LWTLYYGILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFW 217

Query: 99  TFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNI 158
             G+V E  LA  VMP L WRWLL LSA+P  +  +   ++PES RY    G    A   
Sbjct: 218 AIGTVFEVVLAVFVMPSLGWRWLLILSAVPLLLFAVLCFWLPESARYDVLSGNQEKAIAT 277

Query: 159 LDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFS 218
           L +IA  N   +P G L                   ++S    R  +R         LF+
Sbjct: 278 LKRIATENGAPMPLGKL-------------------IISRQEDRGKMRD--------LFT 310

Query: 219 PRFFKTTILLWVLYFGNSFVYYGIVLLASEL-------------SGSQSKCSSSILLSEN 265
           P F  TT+LLW ++F N+F YYG+VLL +EL                ++KCS   L  E 
Sbjct: 311 PHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCGISSRKKAVEAKCS---LACEY 367

Query: 266 VQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMF-IFVCIFLLPLVTLQSNIL 324
           + +   Y+++  T+ +E PG+L    ++DR+GRK +M + F IF    LL  + +  N+ 
Sbjct: 368 LSEED-YMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSFCSLLLFICVGRNV- 425

Query: 325 LTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA-VGLVT 383
           LT LL  AR F  G F  A ++ PE+YPT+ R+ G G    + R+G ++ P +A V L +
Sbjct: 426 LTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLES 485

Query: 384 SCHQTAAILLLEALIVLSVVVILLIPFETKGKELVNT 420
           S + T A+       +L+ +    +P ETKG+ L  +
Sbjct: 486 SVYLTLAV--YSGCCLLAALASCFLPIETKGRGLQES 520

Pongo abelii (taxid: 9601)

>sp|Q8N4V2|SVOP_HUMAN Synaptic vesicle 2-related protein OS=Homo sapiens GN=SVOP PE=2 SV=1

 Score =  202 bits (513), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 136/397 (34%), Positives = 202/397 (50%), Gaps = 49/397 (12%)

Query: 39  LVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFW 98
           L T   G+LSAF+P Y  +L+LRGL G G+G      + + EF+P   R K +++   FW
Sbjct: 158 LWTLYYGILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFW 217

Query: 99  TFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNI 158
             G+V E  LA  VMP L WRWLL LSA+P  +  +   ++PES RY    G    A   
Sbjct: 218 AIGTVFEVVLAVFVMPSLGWRWLLILSAVPLLLFAVLCFWLPESARYDVLSGNQEKAIAT 277

Query: 159 LDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFS 218
           L +IA  N   +P G L                   ++S    R  +R         LF+
Sbjct: 278 LKRIATENGAPMPLGKL-------------------IISRQEDRGKMRD--------LFT 310

Query: 219 PRFFKTTILLWVLYFGNSFVYYGIVLLASEL-------------SGSQSKCSSSILLSEN 265
           P F  TT+LLW ++F N+F YYG+VLL +EL                ++KCS   L  E 
Sbjct: 311 PHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCGISSRKKAVEAKCS---LACEY 367

Query: 266 VQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMF-IFVCIFLLPLVTLQSNIL 324
           + +   Y+++  T+ +E PG+L    ++DR+GRK +M + F IF    LL  + +  N+ 
Sbjct: 368 LSEED-YMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSFCSLLLFICVGRNV- 425

Query: 325 LTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA-VGLVT 383
           LT LL  AR F  G F  A ++ PE+YPT+ R+ G G    + R+G ++ P +A V L +
Sbjct: 426 LTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLES 485

Query: 384 SCHQTAAILLLEALIVLSVVVILLIPFETKGKELVNT 420
           S + T A+       +L+ +    +P ETKG+ L  +
Sbjct: 486 SVYLTLAV--YSGCCLLAALASCFLPIETKGRGLQES 520

Homo sapiens (taxid: 9606)

>sp|Q1JP63|SVOP_BOVIN Synaptic vesicle 2-related protein OS=Bos taurus GN=SVOP PE=2 SV=1

 Score =  202 bits (513), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 133/393 (33%), Positives = 197/393 (50%), Gaps = 41/393 (10%)

Query: 39  LVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFW 98
           L T   G+LSAF+P Y  +L+LRGL G G+G      + + EF+P   R K +++   FW
Sbjct: 158 LWTLYYGILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFW 217

Query: 99  TFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNI 158
             G+V E  LA  VMP L WRWLL LSA+P  +  +   ++PES RY    G    A   
Sbjct: 218 AIGTVFEVVLAVFVMPSLGWRWLLILSAVPLLLFAVLCFWLPESARYDVLSGNQEKAIAT 277

Query: 159 LDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFS 218
           L +IA  N   +P G L                   ++S    R  +R         LF+
Sbjct: 278 LKRIATENGAPMPLGKL-------------------IISRQEDRGKMRD--------LFT 310

Query: 219 PRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSS----------ILLSENVQD 268
           P F  TT+LLW ++F N+F YYG+VLL +EL  +   CS S           L  E + +
Sbjct: 311 PHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEYLSE 370

Query: 269 ASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTAL 328
              Y+++  T+ +E PG+L    ++DR+GRK +M + F+      L L       +LT L
Sbjct: 371 ED-YMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVVFSFCSLLLFICVGRNMLTLL 429

Query: 329 LSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA-VGLVTSCHQ 387
           L  AR F  G F  A ++ PE+YPT+ R+ G G    + R+G ++ P +A V L +S + 
Sbjct: 430 LFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYL 489

Query: 388 TAAILLLEALIVLSVVVILLIPFETKGKELVNT 420
           T A+       +L+ +    +P ETKG+ L  +
Sbjct: 490 TLAV--YSGCCLLAALASCFLPIETKGRGLQES 520

Bos taurus (taxid: 9913)

>sp|Q9Z2I7|SVOP_RAT Synaptic vesicle 2-related protein OS=Rattus norvegicus GN=Svop PE=1 SV=1

 Score =  190 bits (483), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 134/391 (34%), Positives = 197/391 (50%), Gaps = 41/391 (10%)

Query: 41  TFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTF 100
           T   G+LSAF+P Y  +L+LRGL G G+G      + + EF+P   R K +++   FW  
Sbjct: 160 TLYYGILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAI 219

Query: 101 GSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILD 160
           G+V E  LA  VMP L WRWLL LSA P  V  +   ++PES RY    G    A   L 
Sbjct: 220 GTVFEVLLAVFVMPSLGWRWLLLLSAAPLLVFAVLCFWLPESARYDVLSGNQEKAIATLK 279

Query: 161 KIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPR 220
           +IA  N   +P G L                   ++S    R  +R         LF+P 
Sbjct: 280 RIATENGAPMPLGKL-------------------IISRQEDRGKMRD--------LFTPH 312

Query: 221 FFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCS---------SSILLSENVQDASV 271
           F  TT+LLW ++F N+F YYG+VLL +EL  +   CS         +   L+        
Sbjct: 313 FRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEYLSKED 372

Query: 272 YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMF-IFVCIFLLPLVTLQSNILLTALLS 330
           Y+++  T+ +E PG+L    ++DR+GRK +M + F IF    LL  + +  N+ LT LL 
Sbjct: 373 YMDLLWTTLSEFPGVLVTLWVIDRLGRKKTMALCFVIFSLCSLLLFICIGRNV-LTLLLF 431

Query: 331 GARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA-VGLVTSCHQTA 389
            AR F  G F  A ++ PE+YPT+ R+ G G    + R+G ++ P +A V L +S + T 
Sbjct: 432 IARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYLTL 491

Query: 390 AILLLEALIVLSVVVILLIPFETKGKELVNT 420
           A+       +L+ +    +P ETKG+ L  +
Sbjct: 492 AV--YSGCCLLAALASCFLPIETKGRALQES 520

Rattus norvegicus (taxid: 10116)

>sp|Q8BFT9|SVOP_MOUSE Synaptic vesicle 2-related protein OS=Mus musculus GN=Svop PE=1 SV=1

 Score =  189 bits (480), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 135/393 (34%), Positives = 198/393 (50%), Gaps = 41/393 (10%)

Query: 39  LVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFW 98
           L T   G+LSAF+P Y  +L+LRGL G G+G      + + EF+P   R K +++   FW
Sbjct: 158 LWTLYYGILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFW 217

Query: 99  TFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNI 158
             G+V E  LA  VMP L WRWLL LSA P  +  +   ++PES RY    G    A   
Sbjct: 218 AIGTVFEVLLAVFVMPSLGWRWLLLLSAAPLLLFAVLCFWLPESARYDVLSGNQEKAIAT 277

Query: 159 LDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFS 218
           L +IA  N   +P G L                   ++S    R  +R         LF+
Sbjct: 278 LKRIATENGAPMPLGKL-------------------IISRQEDRGKMRD--------LFT 310

Query: 219 PRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCS---------SSILLSENVQDA 269
           P F  TT+LLW ++F N+F YYG+VLL +EL  +   CS         +   L+      
Sbjct: 311 PHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEYLSK 370

Query: 270 SVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMF-IFVCIFLLPLVTLQSNILLTAL 328
             Y+++  T+ +E PG+L    ++DR+GRK +M + F IF    LL  + +  N+ LT L
Sbjct: 371 EDYMDLLWTTLSEFPGVLVTLWVIDRLGRKKTMALCFIIFSLCSLLLFICIGRNV-LTLL 429

Query: 329 LSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA-VGLVTSCHQ 387
           L  AR F  G F  A ++ PE+YPT+ R+ G G    + R+G ++ P +A V L +S + 
Sbjct: 430 LFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYL 489

Query: 388 TAAILLLEALIVLSVVVILLIPFETKGKELVNT 420
           T A+       +L+ V    +P ETKG+ L  +
Sbjct: 490 TLAV--YSGCCLLAGVASCFLPIETKGRALQES 520

Mus musculus (taxid: 10090)

>sp|P30638|YOU1_CAEEL Putative transporter ZK637.1 OS=Caenorhabditis elegans GN=ZK637.1 PE=3 SV=5

 Score =  186 bits (473), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 126/396 (31%), Positives = 191/396 (48%), Gaps = 47/396 (11%)

Query: 39  LVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFW 98
           LV  + G++S  SP++  LL  RGL G G+G      + + EF+P + R K +V+  +FW
Sbjct: 157 LVACIMGVISGMSPHFYVLLFFRGLTGFGIGGVPQSVTLYAEFLPTAQRAKCVVLIESFW 216

Query: 99  TFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNI 158
             G+V EA LA+ VM    WR L+ LS++P  +  +   ++PES R+    G    A   
Sbjct: 217 AIGAVFEALLAYFVMESFGWRALMFLSSLPLGIFAVASFWLPESARFDMASGHPERALET 276

Query: 159 LDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFS 218
           L   A+ N+  LP+G L S               T   S +R               L S
Sbjct: 277 LQAAARMNRVQLPTGRLVSS--------------TKAGSESR----------GDIANLLS 312

Query: 219 PRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQ-------DASV 271
           P   KTTILLW ++   +F YYG+VL  + L  S  +C    L S   Q         S 
Sbjct: 313 PDLRKTTILLWCIWAITAFSYYGMVLFTTVLFQSHDECHGG-LFSNGTQMEVCQPLTRSD 371

Query: 272 YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSG 331
           Y ++  T+ AE PGL+   L+++  GRK +M + +    IF   L        +T L+  
Sbjct: 372 YFDLLSTTLAEFPGLIITVLIIEWFGRKKTMALEYAVFAIFTFLLYFCLDRFTVTVLIFV 431

Query: 332 ARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA-------VGLVTS 384
           AR F  G F  A ++ PE+YPT++R+ G G   A+ RIG +V P +A       + L   
Sbjct: 432 ARAFISGAFQCAYVYTPEVYPTTLRAVGLGTCSAMARIGAIVTPFIAQVASEKSLSLPIG 491

Query: 385 CHQTAAILLLEALIVLSVVVILLIPFETKGKELVNT 420
            + TAAI        L ++  L +P ETKG++++++
Sbjct: 492 IYGTAAI--------LGLIASLSLPIETKGRQMMDS 519

Caenorhabditis elegans (taxid: 6239)

>sp|Q6PDF3|SVOPL_MOUSE Putative transporter SVOPL OS=Mus musculus GN=Svopl PE=2 SV=1

 Score =  156 bits (394), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 120/414 (28%), Positives = 202/414 (48%), Gaps = 59/414 (14%)

Query: 29  FSRMSILGGALVTFVAG----LLSAFSPNYISLLILRGLAGAGLGSGHVF-FSWFMEFVP 83
           + R  IL   L++F+ G    LL++FSP+YI  + LR + G G+ SGH        EF+P
Sbjct: 111 YGRWKIL---LLSFLWGAYFSLLTSFSPSYIWFVFLRTMVGCGV-SGHAQGLIIKTEFLP 166

Query: 84  PSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESP 143
              RG  + +   FW  GS+   ++A +V+P + WRWL+ +++IP  +L++   F+PES 
Sbjct: 167 TKYRGYMLPLSQVFWLAGSLLIISMASVVIPTIGWRWLIRIASIPGIILIMAFKFIPESA 226

Query: 144 RYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRT 203
           R+  + G    A N L+ IA+ N++ +P G L                  P+L   R R 
Sbjct: 227 RFNVSTGNTQAALNTLESIAKMNRSVMPEGQLVE----------------PILEK-RGR- 268

Query: 204 TVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASEL------SGSQSKCS 257
                    F  L   ++ +TT+ +W+++ G SF YYG++L ++EL       GS+S+  
Sbjct: 269 ---------FADLLDSKYLRTTLQIWIIWLGISFAYYGVILASAELLERDLVCGSKSESE 319

Query: 258 SSILLSENVQDA--------------SVYINVFITSFAELPGLLTAALLVDRVGRKLSMT 303
             ++  E   D+              S Y  + I++  E+       L ++ +GR+LS++
Sbjct: 320 PEVV--ETTGDSGEGLSPCYCHIFAPSDYRTMIISTLGEIALNPLNILGINFLGRRLSLS 377

Query: 304 IMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVA 363
           I      +F L L    S+  L   L   R      F    I+  E+YPT MR+ G G +
Sbjct: 378 ITMGCTALFFLLLNICTSSAGLIGFLFMLRALVAANFNTIYIYTAEVYPTPMRAIGMGTS 437

Query: 364 YAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKEL 417
            ++ RIG MV P ++  L+++     A+ L  ++ V+  +    +P ETKG+ L
Sbjct: 438 GSLCRIGAMVAPFISQVLMSASF-LGALCLFSSVCVVCAISAFTLPIETKGRAL 490

Mus musculus (taxid: 10090)

>sp|Q8N434|SVOPL_HUMAN Putative transporter SVOPL OS=Homo sapiens GN=SVOPL PE=2 SV=2

 Score =  154 bits (388), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 115/409 (28%), Positives = 199/409 (48%), Gaps = 51/409 (12%)

Query: 29  FSRMSILGGALVTFVAG----LLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPP 84
           + R  IL   L++F+ G    LL++F+P+YI  + LR + G G+           EF+P 
Sbjct: 111 YGRWKIL---LISFLWGAYFSLLTSFAPSYIWFVFLRTMVGCGVSGHSQGLIIKTEFLPT 167

Query: 85  SNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPR 144
             RG  + +   FW  GS+    LA +++P + WRWL+ +++IP  +L++   F+PES R
Sbjct: 168 KYRGYMLPLSQVFWLAGSLLIIGLASVIIPTIGWRWLIRVASIPGIILIVAFKFIPESAR 227

Query: 145 YLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTT 204
           +  + G    A   L+++A+ N++ +P G L                  P+L   R R  
Sbjct: 228 FNVSTGNTRAALATLERVAKMNRSVMPEGKLVE----------------PVLEK-RGR-- 268

Query: 205 VRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASEL------SGSQSKCSS 258
                   F  L   ++ +TT+ +WV++ G SF YYG++L ++EL       GS+S  + 
Sbjct: 269 --------FADLLDAKYLRTTLQIWVIWLGISFAYYGVILASAELLERDLVCGSKSDSAV 320

Query: 259 SILLSENVQDAS-VYINVF---------ITSFAELPGLLTAALLVDRVGRKLSMTIMFIF 308
            +   ++ +  S  Y ++F         I++  E+       L ++ +GR+LS++I    
Sbjct: 321 VVTGGDSGESQSPCYCHMFAPSDYRTMIISTIGEIALNPLNILGINFLGRRLSLSITMGC 380

Query: 309 VCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGR 368
             +F L L    S+  L   L   R      F    I+  E+YPT+MR+ G G + ++ R
Sbjct: 381 TALFFLLLNICTSSAGLIGFLFMLRALVAANFNTVYIYTAEVYPTTMRALGMGTSGSLCR 440

Query: 369 IGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKEL 417
           IG MV P ++  L+ S     A+ L  ++ V+  +    +P ETKG+ L
Sbjct: 441 IGAMVAPFISQVLM-SASILGALCLFSSVCVVCAISAFTLPIETKGRAL 488

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	434
224118680	492	predicted protein [Populus trichocarpa]	0.923	0.815	0.639	1e-132
255573803	498	sugar transporter, putative [Ricinus com	0.900	0.785	0.618	1e-129
255574249	497	sugar transporter, putative [Ricinus com	0.923	0.806	0.612	1e-129
383932368	482	MFS [Gossypium hirsutum]	0.898	0.809	0.629	1e-127
224118546	493	predicted protein [Populus trichocarpa]	0.896	0.789	0.614	1e-126
222629519	424	hypothetical protein OsJ_16102 [Oryza sa	0.903	0.924	0.547	1e-115
218195538	529	hypothetical protein OsI_17329 [Oryza sa	0.896	0.735	0.549	1e-115
38567900	588	OSJNBa0060N03.20 [Oryza sativa Japonica	0.896	0.661	0.549	1e-115
90265074	489	H0702G05.6 [Oryza sativa Indica Group]	0.896	0.795	0.549	1e-115
224118676	492	predicted protein [Populus trichocarpa]	0.930	0.821	0.566	1e-112

>gi|224118680|ref|XP_002331421.1| predicted protein [Populus trichocarpa] gi|222873635|gb|EEF10766.1| predicted protein [Populus trichocarpa]

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 257/402 (63%), Positives = 311/402 (77%), Gaps = 1/402 (0%)

Query: 31  RMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKW 90
           R   LG  ++T  AG LS FSPNY+SLLILR L G GLG G VF SWF+EFVP S+RG W
Sbjct: 91  RQGFLGITIITSAAGFLSTFSPNYVSLLILRCLVGVGLGGGPVFSSWFLEFVPASHRGTW 150

Query: 91  MVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKG 150
           MVVFSTFWTFG++ EAALAWIV+P L WRWLLA S++P+   L F   +PESPRYL  KG
Sbjct: 151 MVVFSTFWTFGTIFEAALAWIVLPRLNWRWLLAFSSLPSIAQLFFYWIVPESPRYLSMKG 210

Query: 151 RITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGF 210
           RIT+AHNIL+KIAQ NQ+ LP G L SD T  LDEE + S+ TPLLSS R   +  KSGF
Sbjct: 211 RITEAHNILEKIAQLNQSKLPPGMLVSDSTIGLDEESAPSKYTPLLSSTRNLVSDFKSGF 270

Query: 211 SSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDAS 270
           SSF+MLFS +  +TT+LLW+L+FGN+F YYGI+LL SELS  + KC+S++L SEN+QD S
Sbjct: 271 SSFVMLFSSKLIRTTLLLWLLFFGNAFSYYGIILLTSELSSEEGKCASTVLRSENLQDDS 330

Query: 271 VYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLS 330
           +YINVFITS AELPG+L +A++VDR GRKLSM  MF+  CIFLLPLV  Q   L TALL 
Sbjct: 331 LYINVFITSLAELPGILLSAIIVDRFGRKLSMAFMFVLACIFLLPLVFHQHATLTTALLF 390

Query: 331 GARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAA 390
           GARM ++GTF +A I+APE+YPT +R+TGAGVA AVGRIGGMVCPLVAVGLV  CH   A
Sbjct: 391 GARMCAIGTFTVAAIYAPEVYPTVIRATGAGVANAVGRIGGMVCPLVAVGLVAGCHLKEA 450

Query: 391 ILLLEALIVLSVVVILLIPFETKGKELVNTIDGVSNSKQVLV 432
           I+L E +IV+SVV +LL PFET G+EL +++   S+ KQV+V
Sbjct: 451 IILFEVVIVISVVCVLLFPFETSGRELSDSL-AASDPKQVVV 491

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573803|ref|XP_002527821.1| sugar transporter, putative [Ricinus communis] gi|223532795|gb|EEF34573.1| sugar transporter, putative [Ricinus communis]

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 242/391 (61%), Positives = 292/391 (74%)

Query: 31  RMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKW 90
           R  ILG  L+T  AG LS F PNYISL+ LR L G GLG G VF SWF+EFVP S+RG W
Sbjct: 96  RKGILGSTLLTCGAGSLSTFCPNYISLITLRCLVGIGLGGGPVFSSWFLEFVPASHRGTW 155

Query: 91  MVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKG 150
           MVV+ST WTFG++ EA LAWIVMP L+WRWLLA S++P+ VLL+F    PESPRYLCTKG
Sbjct: 156 MVVYSTSWTFGTIFEATLAWIVMPRLSWRWLLAFSSLPSIVLLLFYRLAPESPRYLCTKG 215

Query: 151 RITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGF 210
           R TDAH IL+KIA  NQ  LP G L SD T  LDEE S+    PLLS ARKR +  KS F
Sbjct: 216 RFTDAHRILEKIALLNQAKLPGGILVSDSTTGLDEESSSLSHQPLLSLARKRVSSFKSAF 275

Query: 211 SSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDAS 270
           SSF MLFS R  KTT+LLWVLYFGNSF+YYGI+LL SELSG Q +C S+    EN QD +
Sbjct: 276 SSFFMLFSSRLIKTTLLLWVLYFGNSFLYYGIILLTSELSGRQDECRSATSSLENHQDEN 335

Query: 271 VYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLS 330
           +YI++FITS AELPG++ +A+ VDR GRK SM  MF+  CIFLLPLV+ QS +L T+ L 
Sbjct: 336 LYIDIFITSLAELPGIILSAITVDRFGRKRSMIFMFVAACIFLLPLVSHQSAVLRTSFLF 395

Query: 331 GARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAA 390
           GARM ++GTF IA I+ PE+YPT +R+TG+GVA A GRIGGM+CPLVAVGLVT CH  A 
Sbjct: 396 GARMCAIGTFTIACIYCPELYPTPVRTTGSGVASAAGRIGGMICPLVAVGLVTGCHVEAG 455

Query: 391 ILLLEALIVLSVVVILLIPFETKGKELVNTI 421
           I++ E +  +S + +L  P+ETKG EL +++
Sbjct: 456 IIVFEVVAAISAICLLFFPYETKGCELSDSV 486

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574249|ref|XP_002528039.1| sugar transporter, putative [Ricinus communis] gi|223532569|gb|EEF34357.1| sugar transporter, putative [Ricinus communis]

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 247/403 (61%), Positives = 305/403 (75%), Gaps = 2/403 (0%)

Query: 31  RMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKW 90
           R  +L   ++T  AG +SAFSPNY++L++LR L G GLG  HVF SWF+EF+P S+RGKW
Sbjct: 94  RKCVLSITVITSGAGFISAFSPNYLTLVVLRCLVGFGLGGTHVFLSWFLEFIPTSHRGKW 153

Query: 91  MVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKG 150
           MV+FSTFWT G + EA+LAWIVM  L WRWLLALS +P+F LL+F   +PESPRYLC KG
Sbjct: 154 MVIFSTFWTLGIIFEASLAWIVMLRLNWRWLLALSTVPSFSLLLFYGLVPESPRYLCLKG 213

Query: 151 RITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEET-PLLSSARKRTTVRKSG 209
           R   AH +L+KIA  NQ  LP G L S G    DEE S  E+   LL   R++ +  KSG
Sbjct: 214 RTAQAHQVLEKIALVNQKELPPGMLVSYGKIKEDEEISALEQKRSLLFMDREKISTLKSG 273

Query: 210 FSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDA 269
           FSSF +LFS    +TT+LLWVL+FGN F YYGI+LL S+LS S+SKCS +IL S+N QD 
Sbjct: 274 FSSFSLLFSSNLIQTTLLLWVLFFGNVFSYYGIILLTSQLSSSESKCSLTILHSQNPQDE 333

Query: 270 SVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALL 329
           S++++V ITSFAELPG+L +A++VDR GRKLSM IMFIF  IFLLPLV+ QS+IL T LL
Sbjct: 334 SLFMDVLITSFAELPGILLSAMMVDRFGRKLSMAIMFIFAWIFLLPLVSRQSDILTTGLL 393

Query: 330 SGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTA 389
            GARMFS+GTF +A+I+APE+YPTS+RSTGAG A AVGRIGGMVCPLVAV LV++CH  A
Sbjct: 394 FGARMFSLGTFTVASIYAPELYPTSIRSTGAGTASAVGRIGGMVCPLVAVALVSNCHFKA 453

Query: 390 AILLLEALIVLSVVVILLIPFETKGKELVNTIDGVSNSKQVLV 432
           AI+L E +I ++VV ILL PFET G+EL + +     SKQ LV
Sbjct: 454 AIILFEVVIAITVVCILLFPFETSGRELSDRL-AAPESKQDLV 495

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|383932368|gb|AFH57281.1| MFS [Gossypium hirsutum]

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 246/391 (62%), Positives = 292/391 (74%), Gaps = 1/391 (0%)

Query: 31  RMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKW 90
           R   L  ++VTF AGLLS FSPNY++L +LRGL G GLG   VF SWF+EF+P SNRG W
Sbjct: 91  RKGFLTISMVTFGAGLLSTFSPNYLTLALLRGLVGFGLGGSSVFLSWFLEFIPASNRGMW 150

Query: 91  MVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKG 150
           MVVFSTFWTFGS+ EA LAWIVMP L WRW+LA SA+P+F LLI     PESPRYLC KG
Sbjct: 151 MVVFSTFWTFGSIFEATLAWIVMPRLNWRWVLAFSAVPSFALLILYGVAPESPRYLCMKG 210

Query: 151 RITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEET-PLLSSARKRTTVRKSG 209
             +DA  IL+KIA  NQT LP G L S  +ND DEE + SE T PLL S  K TT  KSG
Sbjct: 211 NTSDALRILEKIASVNQTKLPPGVLVSGRSNDKDEESAPSENTAPLLPSLSKSTTQSKSG 270

Query: 210 FSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDA 269
           FSSF MLFS +  +TT+LLWVL+FG+SF YYGI+LL S+LS  QS C  S+  + N QD 
Sbjct: 271 FSSFFMLFSSKLIRTTLLLWVLFFGDSFSYYGIILLTSKLSSGQSTCFPSLQSNINPQDD 330

Query: 270 SVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALL 329
            +Y+N FITS AELPGLL +A+LVDRVGRK SM IMF    IFL PL+  Q  +L T LL
Sbjct: 331 GLYLNAFITSMAELPGLLLSAILVDRVGRKHSMAIMFGLAFIFLTPLLIQQPAVLTTCLL 390

Query: 330 SGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTA 389
            GARM +MGTF +A+I++PE+YPTS+R+TGAGVA A+GRIGGMVCPLVAVGLV  CHQTA
Sbjct: 391 FGARMNAMGTFTVASIYSPELYPTSVRTTGAGVASAIGRIGGMVCPLVAVGLVNECHQTA 450

Query: 390 AILLLEALIVLSVVVILLIPFETKGKELVNT 420
           A+ L    IV+S+V I L P++TKG+EL +T
Sbjct: 451 AVALFLVAIVVSIVCIQLFPYDTKGRELSDT 481

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118546|ref|XP_002331389.1| predicted protein [Populus trichocarpa] gi|222873603|gb|EEF10734.1| predicted protein [Populus trichocarpa]

 Score =  456 bits (1174), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 239/389 (61%), Positives = 294/389 (75%)

Query: 42  FVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFG 101
           F +GLLSAFSPNY SL+I+R L G GLG   V  SWF+EFVP  +RGKWMVVFSTFWT G
Sbjct: 101 FQSGLLSAFSPNYESLVIIRCLVGLGLGGSTVLCSWFLEFVPAPHRGKWMVVFSTFWTLG 160

Query: 102 SVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDK 161
           ++ EA+LAW+VM  L+WRWLLA S++P+  LL+F   +PESPRYLC KGRI DAH IL K
Sbjct: 161 AIFEASLAWLVMQRLSWRWLLAFSSLPSIALLLFYGIVPESPRYLCMKGRINDAHKILQK 220

Query: 162 IAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRF 221
           IA  NQ+ LP G L  D T   +E+ + S+ TPLLSS RK     KS FSSF MLFS   
Sbjct: 221 IALLNQSELPPGMLVPDSTVGQEEKSAPSKYTPLLSSTRKVIVDFKSVFSSFFMLFSSTL 280

Query: 222 FKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFA 281
            +TT+LLWVL FGN F YYGI+LL SELS  Q KC S+IL SEN+Q+ S+YINVF+TS A
Sbjct: 281 IQTTLLLWVLLFGNVFSYYGIILLTSELSSQQGKCGSTILSSENLQNDSLYINVFVTSLA 340

Query: 282 ELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFI 341
           ELPGLL +A++VDR+GRKLSM +M +  CIFL PL+   S  L TA+L GARM  MG+F 
Sbjct: 341 ELPGLLLSAIIVDRLGRKLSMALMLVLGCIFLFPLLFNVSANLTTAMLFGARMCVMGSFT 400

Query: 342 IANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLS 401
           IA ++APE+YPT++R+TGAGVA +VGRIGGM+CPLVAVGLVT C+ T AI+L E ++ +S
Sbjct: 401 IATLYAPELYPTAVRATGAGVASSVGRIGGMICPLVAVGLVTGCYLTEAIILFEVVMAIS 460

Query: 402 VVVILLIPFETKGKELVNTIDGVSNSKQV 430
               LL PFETKG+EL +++D VS+S QV
Sbjct: 461 AFSSLLFPFETKGQELSDSVDHVSDSIQV 489

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222629519|gb|EEE61651.1| hypothetical protein OsJ_16102 [Oryza sativa Japonica Group]

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 218/398 (54%), Positives = 275/398 (69%), Gaps = 6/398 (1%)

Query: 28  AFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNR 87
            F R   L  A+VT  AG LSAF+PNY+SL+ LR L G GLG G V  SWF+EFVP   R
Sbjct: 23  GFGRRGFLFTAIVTSGAGFLSAFAPNYVSLISLRFLVGIGLGGGPVLASWFLEFVPAPTR 82

Query: 88  GKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLC 147
           G WMVVFS FWT G++ EA+LAW VMP   WRWLLALSA+P+FVLL+F V  PESPR+LC
Sbjct: 83  GTWMVVFSAFWTVGTIFEASLAWTVMPKFGWRWLLALSAVPSFVLLLFYVITPESPRFLC 142

Query: 148 TKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRK 207
            KGR+T+A ++L+K+A+ N   LPSG L SD   +LDE  STSE T LL+ A +  T+ +
Sbjct: 143 MKGRVTEAMDVLEKMARLNNVQLPSGRLVSDKNIELDE-LSTSESTTLLADAEEDDTIIE 201

Query: 208 SGFSSF-----LMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILL 262
              SSF       L SP+  + T+LLW+ +FGN+F YYGIVLL SELS     C+   + 
Sbjct: 202 DKVSSFGGLSVAKLLSPKLIRATLLLWMTFFGNAFSYYGIVLLTSELSNGNRICAKEEVE 261

Query: 263 SENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSN 322
           S +  DAS+Y NVFI+SFAE+PG   +A++VDR+GRKLSM  M    C+FL PL+  +++
Sbjct: 262 SIHSNDASLYKNVFISSFAEIPGSFLSAMIVDRIGRKLSMASMLFTSCVFLFPLIFSRTD 321

Query: 323 ILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLV 382
           IL    L GAR+    +F I  I+APEIYPTS+R+TG GVA +VGRIGG++CPLVAV LV
Sbjct: 322 ILTRVSLFGARLCISASFTIVYIYAPEIYPTSVRTTGIGVASSVGRIGGILCPLVAVALV 381

Query: 383 TSCHQTAAILLLEALIVLSVVVILLIPFETKGKELVNT 420
            SC QT AILL E +I LS + +   PFETKG  L +T
Sbjct: 382 HSCQQTTAILLFELVIFLSGLAVSFFPFETKGCRLNDT 419

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218195538|gb|EEC77965.1| hypothetical protein OsI_17329 [Oryza sativa Indica Group]

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 217/395 (54%), Positives = 274/395 (69%), Gaps = 6/395 (1%)

Query: 31  RMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKW 90
           R   L  A+VT  AG LSAF+PNY+SL+ LR L G GLG G V  SWF+EFVP   RG W
Sbjct: 131 RRGFLFTAIVTSGAGFLSAFAPNYVSLISLRFLVGIGLGGGPVLASWFLEFVPAPTRGTW 190

Query: 91  MVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKG 150
           MVVFS FWT G++ EA+LAW VMP   WRWLLALSA+P+FVLL+F V  PESPR+LC KG
Sbjct: 191 MVVFSAFWTVGTIFEASLAWTVMPKFGWRWLLALSAVPSFVLLLFYVITPESPRFLCMKG 250

Query: 151 RITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGF 210
           R+T+A ++L+K+A+ N   LPSG L SD   +LDE  STSE T LL+ A +  T+ +   
Sbjct: 251 RVTEAMDVLEKMARLNNVQLPSGRLVSDKNIELDE-LSTSESTTLLADAEEDDTIIEDKV 309

Query: 211 SSF-----LMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSEN 265
           SSF       L SP+  + T+LLW+ +FGN+F YYGIVLL SELS     C+   + S +
Sbjct: 310 SSFGGLSVAKLLSPKLIRATLLLWMTFFGNAFSYYGIVLLTSELSNGNRICAKEEVESIH 369

Query: 266 VQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILL 325
             DAS+Y NVFI+SFAE+PG   +A++VDR+GRKLSM  M    C+FL PL+  +++IL 
Sbjct: 370 SNDASLYKNVFISSFAEIPGSFLSAMIVDRIGRKLSMASMLFTSCVFLFPLIFSRTDILT 429

Query: 326 TALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSC 385
              L GAR+    +F I  I+APEIYPTS+R+TG GVA +VGRIGG++CPLVAV LV SC
Sbjct: 430 RVSLFGARLCISASFTIVYIYAPEIYPTSVRTTGIGVASSVGRIGGILCPLVAVALVHSC 489

Query: 386 HQTAAILLLEALIVLSVVVILLIPFETKGKELVNT 420
            QT AILL E +I LS + +   PFETKG  L +T
Sbjct: 490 QQTTAILLFELVIFLSGLAVSFFPFETKGCRLNDT 524

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|38567900|emb|CAE03655.2| OSJNBa0060N03.20 [Oryza sativa Japonica Group]

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 217/395 (54%), Positives = 274/395 (69%), Gaps = 6/395 (1%)

Query: 31  RMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKW 90
           R   L  A+VT  AG LSAF+PNY+SL+ LR L G GLG G V  SWF+EFVP   RG W
Sbjct: 190 RRGFLFTAIVTSGAGFLSAFAPNYVSLISLRFLVGIGLGGGPVLASWFLEFVPAPTRGTW 249

Query: 91  MVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKG 150
           MVVFS FWT G++ EA+LAW VMP   WRWLLALSA+P+FVLL+F V  PESPR+LC KG
Sbjct: 250 MVVFSAFWTVGTIFEASLAWTVMPKFGWRWLLALSAVPSFVLLLFYVITPESPRFLCMKG 309

Query: 151 RITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGF 210
           R+T+A ++L+K+A+ N   LPSG L SD   +LDE  STSE T LL+ A +  T+ +   
Sbjct: 310 RVTEAMDVLEKMARLNNVQLPSGRLVSDKNIELDE-LSTSESTTLLADAEEDDTIIEDKV 368

Query: 211 SSF-----LMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSEN 265
           SSF       L SP+  + T+LLW+ +FGN+F YYGIVLL SELS     C+   + S +
Sbjct: 369 SSFGGLSVAKLLSPKLIRATLLLWMTFFGNAFSYYGIVLLTSELSNGNRICAKEEVESIH 428

Query: 266 VQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILL 325
             DAS+Y NVFI+SFAE+PG   +A++VDR+GRKLSM  M    C+FL PL+  +++IL 
Sbjct: 429 SNDASLYKNVFISSFAEIPGSFLSAMIVDRIGRKLSMASMLFTSCVFLFPLIFSRTDILT 488

Query: 326 TALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSC 385
              L GAR+    +F I  I+APEIYPTS+R+TG GVA +VGRIGG++CPLVAV LV SC
Sbjct: 489 RVSLFGARLCISASFTIVYIYAPEIYPTSVRTTGIGVASSVGRIGGILCPLVAVALVHSC 548

Query: 386 HQTAAILLLEALIVLSVVVILLIPFETKGKELVNT 420
            QT AILL E +I LS + +   PFETKG  L +T
Sbjct: 549 QQTTAILLFELVIFLSGLAVSFFPFETKGCRLNDT 583

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|90265074|emb|CAH67747.1| H0702G05.6 [Oryza sativa Indica Group]

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 217/395 (54%), Positives = 274/395 (69%), Gaps = 6/395 (1%)

Query: 31  RMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKW 90
           R   L  A+VT  AG LSAF+PNY+SL+ LR L G GLG G V  SWF+EFVP   RG W
Sbjct: 91  RRGFLFTAIVTSGAGFLSAFAPNYVSLISLRFLVGIGLGGGPVLASWFLEFVPAPTRGTW 150

Query: 91  MVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKG 150
           MVVFS FWT G++ EA+LAW VMP   WRWLLALSA+P+FVLL+F V  PESPR+LC KG
Sbjct: 151 MVVFSAFWTVGTIFEASLAWTVMPKFGWRWLLALSAVPSFVLLLFYVITPESPRFLCMKG 210

Query: 151 RITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGF 210
           R+T+A ++L+K+A+ N   LPSG L SD   +LDE  STSE T LL+ A +  T+ +   
Sbjct: 211 RVTEAMDVLEKMARLNNVQLPSGRLVSDKNIELDE-LSTSESTTLLADAEEDDTIIEDKV 269

Query: 211 SSF-----LMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSEN 265
           SSF       L SP+  + T+LLW+ +FGN+F YYGIVLL SELS     C+   + S +
Sbjct: 270 SSFGGLSVAKLLSPKLIRATLLLWMTFFGNAFSYYGIVLLTSELSNGNRICAKEEVESIH 329

Query: 266 VQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILL 325
             DAS+Y NVFI+SFAE+PG   +A++VDR+GRKLSM  M    C+FL PL+  +++IL 
Sbjct: 330 SNDASLYKNVFISSFAEIPGSFLSAMIVDRIGRKLSMASMLFTSCVFLFPLIFSRTDILT 389

Query: 326 TALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSC 385
              L GAR+    +F I  I+APEIYPTS+R+TG GVA +VGRIGG++CPLVAV LV SC
Sbjct: 390 RVSLFGARLCISASFTIVYIYAPEIYPTSVRTTGIGVASSVGRIGGILCPLVAVALVHSC 449

Query: 386 HQTAAILLLEALIVLSVVVILLIPFETKGKELVNT 420
            QT AILL E +I LS + +   PFETKG  L +T
Sbjct: 450 QQTTAILLFELVIFLSGLAVSFFPFETKGCRLNDT 484

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118676|ref|XP_002331420.1| predicted protein [Populus trichocarpa] gi|222873634|gb|EEF10765.1| predicted protein [Populus trichocarpa]

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 230/406 (56%), Positives = 293/406 (72%), Gaps = 2/406 (0%)

Query: 17  KLLLEPLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFS 76
           + ++ PL     +     LG  L+T  AGLLSAFSPNY SL+ILR L G+GLG G VF S
Sbjct: 87  QTIISPLIPCINYMLKGFLGATLLTCGAGLLSAFSPNYASLVILRCLVGSGLGGGSVFSS 146

Query: 77  WFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFI 136
           WF+EFVP S+RGK M++ S FW FG++ EA LAW+VMP L+WRWLLA+S +PAF LL+F 
Sbjct: 147 WFLEFVPASHRGKRMLLLSWFWAFGTIFEALLAWMVMPRLSWRWLLAVSCLPAFALLLFY 206

Query: 137 VFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLL 196
             +PESPRYLC KGRI DA+NIL+KIA  NQ+ LP G L  D T  LDEE +TSE TPLL
Sbjct: 207 SHVPESPRYLCMKGRINDAYNILEKIALLNQSKLPPGELVPDSTIGLDEESATSEYTPLL 266

Query: 197 SSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKC 256
           S+  K     +SGF SFLMLFS +  +TT+LLW L FGN F YY I+LL SELS  QS+C
Sbjct: 267 STTEKMDLDFRSGFQSFLMLFSSKLIRTTLLLWELLFGNVFSYYAIILLTSELSSWQSRC 326

Query: 257 SSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPL 316
            S++L SEN    S+YINVFI++ AELPG+L +A +VDR+GRKL++   F+   IFLLPL
Sbjct: 327 GSNLLKSENPD--SLYINVFISNLAELPGILLSATIVDRIGRKLTVAFTFVLAGIFLLPL 384

Query: 317 VTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPL 376
           V  QS  L  + L GARM +   + +A I+  E+YPTS+R+TGAG A A G++GGM+CPL
Sbjct: 385 VYHQSATLTMSFLFGARMSTKAAYSVATIYVQELYPTSVRATGAGAANAAGKVGGMICPL 444

Query: 377 VAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKELVNTID 422
           VAVGLVTSC  T AI+L E L+ +S V ++ IP +TKG++L ++ID
Sbjct: 445 VAVGLVTSCQITEAIILFEVLMAISAVCVMFIPVDTKGQKLCDSID 490

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	434
TAIR|locus:2089270	500	NiaP "nicotinate transporter"	0.891	0.774	0.459	1.4e-85
ZFIN|ZDB-GENE-070705-359	411	svopb "SV2 related protein hom	0.460	0.486	0.309	6.8e-43
UNIPROTKB|F1NIB3	554	SVOP "Uncharacterized protein"	0.458	0.359	0.323	3e-39
ZFIN|ZDB-GENE-060526-336	549	svopa "SV2 related protein hom	0.398	0.315	0.329	6.3e-39
UNIPROTKB|F6XK47	483	SVOP "Uncharacterized protein"	0.458	0.412	0.323	8.7e-39
RGD|620277	548	Svop "SV2 related protein" [Ra	0.458	0.363	0.323	1.4e-38
UNIPROTKB|F1LPX1	548	Svop "Synaptic vesicle 2-relat	0.458	0.363	0.323	1.4e-38
UNIPROTKB|Q9Z2I7	548	Svop "Synaptic vesicle 2-relat	0.458	0.363	0.323	1.4e-38
UNIPROTKB|E2QZ16	548	SVOP "Uncharacterized protein"	0.458	0.363	0.323	2e-38
UNIPROTKB|Q8N4V2	548	SVOP "Synaptic vesicle 2-relat	0.458	0.363	0.323	2.2e-38

TAIR|locus:2089270 NiaP "nicotinate transporter" [Arabidopsis thaliana (taxid:3702)]

 Score = 856 (306.4 bits), Expect = 1.4e-85, P = 1.4e-85
 Identities = 185/403 (45%), Positives = 240/403 (59%)

Query:    38 ALVTFVAGLLSAFSPNYXXXXXXXXXXXXXXXXXHVFFSWFMEFVPPSNRGKWMVVFSTF 97
             A+VTFVAG LSAFSPNY                  V  SW++EF+P  +RG WMVVFS F
Sbjct:    97 AVVTFVAGFLSAFSPNYMWLIILRCLVGLGLGGGPVLASWYLEFIPAPSRGTWMVVFSAF 156

Query:    98 WTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHN 157
             WT G++ EA+LAW+VMP L WRWLLA S++P+ +LL+F  +  ESPRYL  +GR  +A  
Sbjct:   157 WTVGTIFEASLAWLVMPRLGWRWLLAFSSVPSSLLLLFYRWTSESPRYLILQGRKAEALA 216

Query:   158 ILDKIAQFNQTSLPSGNLTSDGTNDLDEEFST-SEETPLLSSARKRTTV----------R 206
             IL+KIA+ N+T LP G L+S+   +L+E  +  +E T LL +      V          +
Sbjct:   217 ILEKIARMNKTQLPPGVLSSELETELEENKNIPTENTHLLKAGESGEAVAVSKIVLKADK 276

Query:   207 KSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLAXXXXXXXXXXXXXXXXXENV 266
             + GFS  L L SP   K T+LLWV++FGN+F YYG+VLL                   N 
Sbjct:   277 EPGFS-LLALLSPTLMKRTLLLWVVFFGNAFAYYGVVLLTTELNNSHNRCYPTEKQLRNS 335

Query:   267 QDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLT 326
              D + Y +VFI SFAE PGLL +A +VDR+GRK SM  M    CIFLLPL++ QS  + T
Sbjct:   336 NDVN-YRDVFIASFAEFPGLLISAAMVDRLGRKASMASMLFTCCIFLLPLLSHQSPFITT 394

Query:   327 ALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH 386
              LL G R+     F +  I+APEIYPT++R+TG GV  +VGRIGG++CPLVAVGLV  CH
Sbjct:   395 VLLFGGRICISAAFTVVYIYAPEIYPTAVRTTGVGVGSSVGRIGGILCPLVAVGLVHGCH 454

Query:   387 QTXXXXXXXXXXXXXXXXXXXXPFETKGKELVNTIDGVSNSKQ 429
             QT                    PFET G++L    D +S SK+
Sbjct:   455 QTIAVLLFEVVILVSGICVCLFPFETSGRDLT---DSISASKE 494

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0090416 "nicotinate transporter activity" evidence=IDA

GO:0090417 "N-methylnicotinate transporter activity" evidence=IDA

GO:2001142 "nicotinate transport" evidence=IDA

GO:2001143 "N-methylnicotinate transport" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

ZFIN|ZDB-GENE-070705-359 svopb "SV2 related protein homolog b (rat)" [Danio rerio (taxid:7955)]

 Score = 270 (100.1 bits), Expect = 6.8e-43, Sum P(2) = 6.8e-43
 Identities = 65/210 (30%), Positives = 106/210 (50%)

Query:   216 LFSPRFFKTTILLWVLYFGNSFVYYGIVLLAXXXXXXXXXXXXXXXXXEN-----VQDAS 270
             LF P + +TT+L+W ++F ++F+YYG+VLL                  E+      Q  +
Sbjct:   193 LFIPEYRRTTLLVWCIWFFSAFLYYGLVLLTTELFQAGSACVTENSNIEHQCSLMCQHLT 252

Query:   271 V--YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTAL 328
             +  Y+++  T+FAE PGLL A  +V+R+ R+ SM I F    + +LPL      I+LT  
Sbjct:   253 IDDYLDLLWTTFAEFPGLLVALWMVNRISRRKSMVICFSLFTVCILPLYACTHRIVLTVF 312

Query:   329 LSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA-VGLVTSCHQ 387
             +  AR      + IA ++ PE++PT+ R+ G G +  + R+G +V P +A V L +S + 
Sbjct:   313 IFIARTSINAGWQIAYVYTPEVFPTATRAIGIGTSSGMSRVGALVTPFIAQVLLKSSVYL 372

Query:   388 TXXXXXXXXXXXXXXXXXXXXPFETKGKEL 417
             T                    P ET+G+ L
Sbjct:   373 TLSVYLIFGLLGTAACWAL--PMETEGRSL 400

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1NIB3 SVOP "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 270 (100.1 bits), Expect = 3.0e-39, Sum P(2) = 3.0e-39
 Identities = 69/213 (32%), Positives = 103/213 (48%)

Query:   216 LFSPRFFKTTILLWVLYFGNSFVYYGIVLLAXXXXXXXXXXXXXXXXXENVQDASV---- 271
             LF+P F  TT+LLW ++F N+F YYG+VLL                  E     S+    
Sbjct:   314 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTEFFQAGDVCSISSRRKEVKAKCSLTCEY 373

Query:   272 -----YINVFITSFAELPGLLTAALLVDRVGRKLSMTI-MFIFVCIFLLPLVTLQSNILL 325
                  Y ++  T+ +E PG+L    ++DR+GRK +M +  F+F    LL  + +  N+L 
Sbjct:   374 LTEEDYTDLLWTTLSEFPGVLVTLWIIDRIGRKKTMALSFFVFSFCSLLLFLCVGRNVL- 432

Query:   326 TALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA-VGLVTS 384
             T LL  AR F  G F  A ++ PE+YPT+ R+ G G    + R+G ++ P +A V L +S
Sbjct:   433 TVLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESS 492

Query:   385 CHQTXXXXXXXXXXXXXXXXXXXXPFETKGKEL 417
              + T                    P ETKG+ L
Sbjct:   493 VYLTLAVYSGCCLLAAVASFFL--PIETKGRGL 523

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-060526-336 svopa "SV2 related protein homolog a (rat)" [Danio rerio (taxid:7955)]

 Score = 257 (95.5 bits), Expect = 6.3e-39, Sum P(2) = 6.3e-39
 Identities = 60/182 (32%), Positives = 96/182 (52%)

Query:   216 LFSPRFFKTTILLWVLYFGNSFVYYGIVLLAXXXXXXXXX-XXXXXXXXE---NVQ---- 267
             LFSP F  TT+LLW ++F N+F YYG+VLL                   E   +++    
Sbjct:   308 LFSPHFRWTTVLLWFIWFSNAFSYYGVVLLTTELFQEGGVCGGAKGSKMEPGCSLECKYL 367

Query:   268 DASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTA 327
             ++  Y ++  T+ +E PGLL     +DR+GR+ +M + F    + ++PL +      LT 
Sbjct:   368 NSDDYKDLLWTTLSEFPGLLVTLWAIDRLGRRKTMALCFFVFSLCIVPLYSCVGRTSLTV 427

Query:   328 LLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA-VGLVTSCH 386
              +  AR F  G F  A ++ PE+YPT+ R+ G G +  + R+G ++ P VA V L +S +
Sbjct:   428 FIFIARAFIAGGFQAAYVYTPEVYPTATRALGLGTSSGMARVGALITPFVAQVMLESSVY 487

Query:   387 QT 388
              T
Sbjct:   488 LT 489

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|F6XK47 SVOP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 264 (98.0 bits), Expect = 8.7e-39, Sum P(2) = 8.7e-39
 Identities = 69/213 (32%), Positives = 103/213 (48%)

Query:   216 LFSPRFFKTTILLWVLYFGNSFVYYGIVLLAXXXXXXXXXXXXXXXXXENVQDASV---- 271
             LF+P F  TT+LLW ++F N+F YYG+VLL                        S+    
Sbjct:   243 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSQKKAVEAKCSLACEY 302

Query:   272 -----YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMF-IFVCIFLLPLVTLQSNILL 325
                  Y+++  T+ +E PG+L    ++DR+GRK +M + F IF    LL  + +  N +L
Sbjct:   303 LSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSLCSLLLFICVGRN-ML 361

Query:   326 TALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA-VGLVTS 384
             T LL  AR F  G F  A ++ PE+YPT+ R+ G G    + R+G ++ P +A V L +S
Sbjct:   362 TLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESS 421

Query:   385 CHQTXXXXXXXXXXXXXXXXXXXXPFETKGKEL 417
              + T                    P ETKG+ L
Sbjct:   422 VYLTLAVYSGCCLLAALASCFL--PIETKGRGL 452

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

RGD|620277 Svop "SV2 related protein" [Rattus norvegicus (taxid:10116)]

 Score = 266 (98.7 bits), Expect = 1.4e-38, Sum P(2) = 1.4e-38
 Identities = 69/213 (32%), Positives = 103/213 (48%)

Query:   216 LFSPRFFKTTILLWVLYFGNSFVYYGIVLLAXXXXXXXXXXXXXXXXXENVQDASV---- 271
             LF+P F  TT+LLW ++F N+F YYG+VLL                        S+    
Sbjct:   308 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEY 367

Query:   272 -----YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMF-IFVCIFLLPLVTLQSNILL 325
                  Y+++  T+ +E PG+L    ++DR+GRK +M + F IF    LL  + +  N+L 
Sbjct:   368 LSKEDYMDLLWTTLSEFPGVLVTLWVIDRLGRKKTMALCFVIFSLCSLLLFICIGRNVL- 426

Query:   326 TALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA-VGLVTS 384
             T LL  AR F  G F  A ++ PE+YPT+ R+ G G    + R+G ++ P +A V L +S
Sbjct:   427 TLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESS 486

Query:   385 CHQTXXXXXXXXXXXXXXXXXXXXPFETKGKEL 417
              + T                    P ETKG+ L
Sbjct:   487 VYLTLAVYSGCCLLAALASCFL--PIETKGRAL 517

GO:0008021 "synaptic vesicle" evidence=IDA

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

UNIPROTKB|F1LPX1 Svop "Synaptic vesicle 2-related protein" [Rattus norvegicus (taxid:10116)]

 Score = 266 (98.7 bits), Expect = 1.4e-38, Sum P(2) = 1.4e-38
 Identities = 69/213 (32%), Positives = 103/213 (48%)

Query:   216 LFSPRFFKTTILLWVLYFGNSFVYYGIVLLAXXXXXXXXXXXXXXXXXENVQDASV---- 271
             LF+P F  TT+LLW ++F N+F YYG+VLL                        S+    
Sbjct:   308 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEY 367

Query:   272 -----YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMF-IFVCIFLLPLVTLQSNILL 325
                  Y+++  T+ +E PG+L    ++DR+GRK +M + F IF    LL  + +  N+L 
Sbjct:   368 LSKEDYMDLLWTTLSEFPGVLVTLWVIDRLGRKKTMALCFVIFSLCSLLLFICIGRNVL- 426

Query:   326 TALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA-VGLVTS 384
             T LL  AR F  G F  A ++ PE+YPT+ R+ G G    + R+G ++ P +A V L +S
Sbjct:   427 TLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESS 486

Query:   385 CHQTXXXXXXXXXXXXXXXXXXXXPFETKGKEL 417
              + T                    P ETKG+ L
Sbjct:   487 VYLTLAVYSGCCLLAALASCFL--PIETKGRAL 517

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q9Z2I7 Svop "Synaptic vesicle 2-related protein" [Rattus norvegicus (taxid:10116)]

 Score = 266 (98.7 bits), Expect = 1.4e-38, Sum P(2) = 1.4e-38
 Identities = 69/213 (32%), Positives = 103/213 (48%)

Query:   216 LFSPRFFKTTILLWVLYFGNSFVYYGIVLLAXXXXXXXXXXXXXXXXXENVQDASV---- 271
             LF+P F  TT+LLW ++F N+F YYG+VLL                        S+    
Sbjct:   308 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEY 367

Query:   272 -----YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMF-IFVCIFLLPLVTLQSNILL 325
                  Y+++  T+ +E PG+L    ++DR+GRK +M + F IF    LL  + +  N+L 
Sbjct:   368 LSKEDYMDLLWTTLSEFPGVLVTLWVIDRLGRKKTMALCFVIFSLCSLLLFICIGRNVL- 426

Query:   326 TALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA-VGLVTS 384
             T LL  AR F  G F  A ++ PE+YPT+ R+ G G    + R+G ++ P +A V L +S
Sbjct:   427 TLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESS 486

Query:   385 CHQTXXXXXXXXXXXXXXXXXXXXPFETKGKEL 417
              + T                    P ETKG+ L
Sbjct:   487 VYLTLAVYSGCCLLAALASCFL--PIETKGRAL 517

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E2QZ16 SVOP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 264 (98.0 bits), Expect = 2.0e-38, Sum P(2) = 2.0e-38
 Identities = 69/213 (32%), Positives = 103/213 (48%)

Query:   216 LFSPRFFKTTILLWVLYFGNSFVYYGIVLLAXXXXXXXXXXXXXXXXXENVQDASV---- 271
             LF+P F  TT+LLW ++F N+F YYG+VLL                        S+    
Sbjct:   308 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSQKKAVEAKCSLACEY 367

Query:   272 -----YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMF-IFVCIFLLPLVTLQSNILL 325
                  Y+++  T+ +E PG+L    ++DR+GRK +M + F IF    LL  + +  N +L
Sbjct:   368 LSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSLCSLLLFICVGRN-ML 426

Query:   326 TALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA-VGLVTS 384
             T LL  AR F  G F  A ++ PE+YPT+ R+ G G    + R+G ++ P +A V L +S
Sbjct:   427 TLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESS 486

Query:   385 CHQTXXXXXXXXXXXXXXXXXXXXPFETKGKEL 417
              + T                    P ETKG+ L
Sbjct:   487 VYLTLAVYSGCCLLAALASCFL--PIETKGRGL 517

GO:0016021 "integral to membrane" evidence=IEA

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

UNIPROTKB|Q8N4V2 SVOP "Synaptic vesicle 2-related protein" [Homo sapiens (taxid:9606)]

 Score = 263 (97.6 bits), Expect = 2.2e-38, Sum P(2) = 2.2e-38
 Identities = 69/213 (32%), Positives = 103/213 (48%)

Query:   216 LFSPRFFKTTILLWVLYFGNSFVYYGIVLLAXXXXXXXXXXXXXXXXXENVQDASV---- 271
             LF+P F  TT+LLW ++F N+F YYG+VLL                        S+    
Sbjct:   308 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCGISSRKKAVEAKCSLACEY 367

Query:   272 -----YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMF-IFVCIFLLPLVTLQSNILL 325
                  Y+++  T+ +E PG+L    ++DR+GRK +M + F IF    LL  + +  N+L 
Sbjct:   368 LSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSFCSLLLFICVGRNVL- 426

Query:   326 TALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA-VGLVTS 384
             T LL  AR F  G F  A ++ PE+YPT+ R+ G G    + R+G ++ P +A V L +S
Sbjct:   427 TLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESS 486

Query:   385 CHQTXXXXXXXXXXXXXXXXXXXXPFETKGKEL 417
              + T                    P ETKG+ L
Sbjct:   487 VYLTLAVYSGCCLLAALASCFL--PIETKGRGL 517

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q940M4	OCT7_ARATH	No assigned EC number	0.5037	0.8917	0.774	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	434
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	2e-62
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	8e-28
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	7e-27
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	1e-19
TIGR01299	742	TIGR01299, synapt_SV2, synaptic vesicle protein SV	2e-17
PRK11551	406	PRK11551, PRK11551, putative 3-hydroxyphenylpropio	1e-11
PRK03893	496	PRK03893, PRK03893, putative sialic acid transport	6e-11
TIGR00887	502	TIGR00887, 2A0109, phosphate:H+ symporter	3e-10
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	4e-10
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	6e-10
TIGR00883	394	TIGR00883, 2A0106, metabolite-proton symporter	4e-08
TIGR00891	405	TIGR00891, 2A0112, putative sialic acid transporte	6e-08
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	9e-08
TIGR01299	742	TIGR01299, synapt_SV2, synaptic vesicle protein SV	1e-07
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	1e-06
PRK12307	426	PRK12307, PRK12307, putative sialic acid transport	1e-05
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	1e-04
TIGR00881	379	TIGR00881, 2A0104, phosphoglycerate transporter fa	2e-04
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	3e-04
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	4e-04
TIGR00891	405	TIGR00891, 2A0112, putative sialic acid transporte	6e-04
PRK10406	432	PRK10406, PRK10406, alpha-ketoglutarate transporte	0.001
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	0.001

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score =  209 bits (535), Expect = 2e-62
 Identities = 119/391 (30%), Positives = 181/391 (46%), Gaps = 59/391 (15%)

Query: 39  LVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVF-FSWFMEFVPPSNRGKWMVVFSTF 97
           LVT V+G+L+AFSPNY   L+ R L G G+G   V       EF+P   R     +   F
Sbjct: 165 LVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVF 224

Query: 98  WTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHN 157
           ++ G V    +A+ +     WRWL    ++P F+  +   F+PESPR+L ++GRI +A  
Sbjct: 225 FSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALK 281

Query: 158 ILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLF 217
           IL +IA+ N   LP+             E  +      LSS++K          SFL LF
Sbjct: 282 ILQRIAKINGKKLPA-------------EVLSLSLEKDLSSSKK--------QYSFLDLF 320

Query: 218 -SPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVF 276
            +P   KTT+ L +L+F  +F YYG+VL    L G                  ++Y+++F
Sbjct: 321 RTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGNLGG------------------NIYLDLF 362

Query: 277 ITSFAELPGLLTAALLVDRVGRKLSMTIMFIF--VCIFLLPLVTLQSNILLTALLSGARM 334
           I+   ELP  L   LL+DR+GR+ +M    +   V + LL  V +    L TAL    + 
Sbjct: 363 ISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKF 422

Query: 335 FSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLL 394
                F +  ++  E+YPT +R+ G GV   + R+G ++ P +               L 
Sbjct: 423 GITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLV--------YLGEKWLF 474

Query: 395 EALIVLSVVVILLIPF-----ETKGKELVNT 420
             L++   + +L         ETKG  L  T
Sbjct: 475 LPLVLFGGLALLAGILTLFLPETKGVPLPET 505

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score =  113 bits (285), Expect = 8e-28
 Identities = 89/358 (24%), Positives = 143/358 (39%), Gaps = 50/358 (13%)

Query: 29  FSRMSILGGALVTFVAG-LLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSN 86
             R  +L  +++ F    LL A + N   LLILR LAG GLG       +   E+ P   
Sbjct: 79  IGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF 138

Query: 87  RGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAI-PAFVLLIFIVFMPESPRY 145
           RG  + +    +  G+     LA  ++P+  WR L  +  I P  +LL+ + F+PES  +
Sbjct: 139 RGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDF 198

Query: 146 LCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTV 205
           L +K   T    I++ IA   Q    S                       L   +     
Sbjct: 199 LVSKRPET-VRRIVNAIAPQMQAEAQSA----------------------LPEQKATQGT 235

Query: 206 RKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIV----LLASELSGSQSKCSSSIL 261
           ++S    F  LF  +  + T+LLW+LYF      Y +      L  EL  S S   ++  
Sbjct: 236 KRS---VFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSL--AATG 290

Query: 262 LSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTI-MFIFVCIFLLPLVTLQ 320
                          + +F  + G +    L DR+G +++  + +   V   L+      
Sbjct: 291 G-------------ALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFS 337

Query: 321 SNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA 378
             +LL      A  F  G            YPT++R+TG G A  +GR+G ++ P++A
Sbjct: 338 PTLLLLLGAI-AGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILA 394

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score =  111 bits (280), Expect = 7e-27
 Identities = 87/409 (21%), Positives = 166/409 (40%), Gaps = 64/409 (15%)

Query: 31  RMSILGGALVTFVAGLLSAFSP--NYISLLILRGLAGAGLGSGHVFFSWFM-EFVPPSNR 87
           + S+L G ++  +  LL  F+   ++  L++ R + G G+G   V    ++ E  P   R
Sbjct: 76  KKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISVLVPMYISEIAPKKLR 135

Query: 88  GKWMVVFSTFWTFGSVSEAALAWIV---MPILTWRWLLALSAIPAFVLLIFIVFMPESPR 144
           G    ++    TFG +  A +   +        WR  L L  +PA +LLI ++F+PESPR
Sbjct: 136 GALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPAILLLIGLLFLPESPR 195

Query: 145 YLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTT 204
           +L  KG++ +A  +L K+              SD   ++ EE  + E +           
Sbjct: 196 WLVLKGKLEEARAVLAKL-----------RGVSDVDQEIQEEKDSLERS----------- 233

Query: 205 VRKSGFSSFLMLFSPRFFKTTILLWVLYFG-------NSFVYYGIVLLASELSGSQSKCS 257
             ++  +S+L LF  +  +  +L+ V+          N+  YY   +             
Sbjct: 234 -VEAEKASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFE----------- 281

Query: 258 SSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRK-------LSMTIMFIFVC 310
           +  L    +    V +  F+ +F        A  LVDR GR+         M I F+ + 
Sbjct: 282 TLGLSDSLLVTIIVGVVNFVFTFI-------AIFLVDRFGRRPLLLLGAAGMAICFLVLG 334

Query: 311 IFLLPLVTLQ--SNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGR 368
           + LL +   +    + +  +L     F++G   +  +   E++P  +R     +A A   
Sbjct: 335 VALLGVAKSKGAGIVAIVFILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANW 394

Query: 369 IGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKEL 417
           +   +   +   +  +      ++    L++  + V   +P ETKG+ L
Sbjct: 395 LANFLIGFLFPIITGAIGGYVFLVFAGLLVLFILFVFFFVP-ETKGRTL 442

Length = 449

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score = 90.5 bits (225), Expect = 1e-19
 Identities = 95/417 (22%), Positives = 161/417 (38%), Gaps = 69/417 (16%)

Query: 31  RMSILGGALVTFVAGLLS---AFSPNYISLLILRGLAGAGLGSGHVFFSWFM-EFVPPSN 86
           + S+L  AL+  +  +L    AF+ +   L++ R L G G+G        ++ E  P + 
Sbjct: 101 KKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKAL 160

Query: 87  RGKWMVVFSTFWTFGSVSEAALAWIVMPI-------LTWRWLLALSAIPAFVLLIFIVFM 139
           RG    ++    TFG +    +A+            L WR  L L  IPA +L + + F+
Sbjct: 161 RGALTSLYQLAITFGIL----VAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFL 216

Query: 140 PESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSA 199
           PESPR+L  KGR+ +A   L ++                      E+    +E  L+   
Sbjct: 217 PESPRWLVGKGRVEEARKSLARL-----------------RGTSGEDKELLDELELIDIK 259

Query: 200 RKRTTVRKSGFSSFLMLFS------PRFFKTTILLWVLYF--GNSFVYYGIVLLASELSG 251
           R      +S   S+  LFS       R F   +L W   F   N+ +YY   +   E +G
Sbjct: 260 RSIEK--RSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIF--ENAG 315

Query: 252 SQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRK-----------L 300
             +  +        +    V    F  +F        A  LVDR GR+           +
Sbjct: 316 VSTDHAF-------LVSIIVGAVNFAFTF-------VAIFLVDRFGRRPLLLIGAAGMAI 361

Query: 301 SMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGA 360
            + ++ I    F+        N+ +  +L     F+MG   +  +   EI+P S+R  G 
Sbjct: 362 CLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGI 421

Query: 361 GVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKEL 417
            +A A   +   +   +   ++ S       +    L VL ++ +     ETKG+ L
Sbjct: 422 SIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTL 478

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2

 Score = 84.3 bits (208), Expect = 2e-17
 Identities = 62/233 (26%), Positives = 98/233 (42%), Gaps = 21/233 (9%)

Query: 31  RMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGK 89
           +  +L    V       S+F   Y   L  R L+G G+G    + FS+F EF+    RG+
Sbjct: 232 KQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGE 291

Query: 90  WMVVFSTFWTFGSVSEAALAWIVMP-------------ILTWRWLLALSAIPAFVLLIFI 136
            +     FW  G +  AA+AW ++P               +WR  + + A P    +  +
Sbjct: 292 HLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGAL 351

Query: 137 VFMPESPRYLCTKGRITDAHNILDKIAQFNQTSL--PSGNLTSDGTNDLDEEFSTSEETP 194
            FMPESPR+    G+  +A  IL  I   N  +   P    + +    + +E    E   
Sbjct: 352 TFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQEDELIEIES 411

Query: 195 LLSSARKRTTVRKSG-----FSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGI 242
              +  +R  VR        + +FL  F+P   + TI L  ++F  SF YYG+
Sbjct: 412 DTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGL 464

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742

>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

 Score = 65.8 bits (161), Expect = 1e-11
 Identities = 48/212 (22%), Positives = 89/212 (41%), Gaps = 16/212 (7%)

Query: 199 ARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSS 258
                  +++       LF       T+LLW+ YF    V Y    L + L         
Sbjct: 198 QAAGAGKQRAPVLR--ALFGEGRATATLLLWISYFFTLIVLY---FLLNWLP-------- 244

Query: 259 SILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT 318
           S+L+ + +  +   +     +     G L    L+DR+  +  + +++  +   L  L  
Sbjct: 245 SLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAA 304

Query: 319 LQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA 378
             S   +      A +F +G   +    AP  YPT +R TG G A AVGR+G M  PL+A
Sbjct: 305 APSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLA 364

Query: 379 VGLVTSCHQTAAILLLEA--LIVLSVVVILLI 408
            G + +  ++   ++  +  +I+++ +  LL+
Sbjct: 365 -GQLLALGRSTVGVIGASIPVILVAALAALLL 395

Length = 406

>gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional

 Score = 63.9 bits (156), Expect = 6e-11
 Identities = 83/383 (21%), Positives = 149/383 (38%), Gaps = 31/383 (8%)

Query: 38  ALVTFVAG-LLSAFSPNYISLLILR-----GLAGA-GLGSGHVFFSWFMEFVPPSNRGKW 90
           ++V F  G L   F+P Y +L I R     G+AG  G  + +V  SW     P   R K 
Sbjct: 91  SIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESW-----PKHLRNKA 145

Query: 91  MVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKG 150
                + ++ G+V  A +  +V+P+  WR L  +  +P    L     +PE+  +     
Sbjct: 146 SGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPIIFALWLRKNLPEAEDWKEKHA 205

Query: 151 RITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGF 210
                  ++D + +  +  + +  LT      L   F+ + +   + +      +  + F
Sbjct: 206 GKAPVRTMVDILYR-GEHRIINILLTLAAAAALWFCFAGNLQNAAIVAVL--GLLCAAIF 262

Query: 211 SSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDAS 270
            SF++  S + + T ++L V           +VL A   S        + L ++   D  
Sbjct: 263 ISFMVQSSGKRWPTGVMLMV-----------VVLFAFLYSWPIQALLPTYLKTDLGYDPH 311

Query: 271 VYINV-FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNI--LLTA 327
              NV F + F    G      L D +G + +     +   + ++P+  +      +L  
Sbjct: 312 TVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGL 371

Query: 328 LLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQ 387
           LL   +M   G   +        + T  R+ G G  Y VG +GG + P++   +      
Sbjct: 372 LLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDL 431

Query: 388 TAAILLLEALIVLSVVVILLIPF 410
             A+  L     L+ VVILLI  
Sbjct: 432 GTALASLS--FSLTFVVILLIGL 452

Length = 496

>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter

 Score = 61.3 bits (149), Expect = 3e-10
 Identities = 79/327 (24%), Positives = 128/327 (39%), Gaps = 60/327 (18%)

Query: 118 WRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTS 177
           WR L+   A+PA + L F + +PE+PRY       T       + A  + +++    +  
Sbjct: 203 WRILIGFGAVPALLALYFRLTIPETPRY-------TADVAKDVEQAASDMSAVLQVKI-- 253

Query: 178 DGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSF 237
           +   D  E+ ST+ E P  S          S F  F   F  R  K  +     +F    
Sbjct: 254 EAEPDEVEKASTAVEVPKASW---------SDF--FTHFFKWRHGKHLLGTAGSWFLLDI 302

Query: 238 VYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAEL--------PGLLTA 289
            +YG+ L       +Q    S+I  S      + Y  ++ T+   L        PG    
Sbjct: 303 AFYGVNL-------NQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVT 355

Query: 290 ALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAP- 348
             LVD +GRK    + F  + +    L    +++     L+   ++ +     AN F P 
Sbjct: 356 VFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLA---IYVL-AQFFAN-FGPN 410

Query: 349 --------EIYPTSMRSTGAGVAYAVGRIGGMV-----CPLVAVGLVTSCHQTAA----- 390
                   E++PT  RST  G++ A G+ G ++       L   G  T  + T       
Sbjct: 411 ATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHV 470

Query: 391 ILLLEALIVLSVVVILLIPFETKGKEL 417
           + +    + L ++  LLIP ETKGK L
Sbjct: 471 LEIFALFMFLGILFTLLIP-ETKGKSL 496

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 60.8 bits (148), Expect = 4e-10
 Identities = 50/203 (24%), Positives = 82/203 (40%), Gaps = 11/203 (5%)

Query: 208 SGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQ 267
           +     L L      +  +LL + +F  SF YYG++             S+         
Sbjct: 160 AILGLLLALLLLFLLRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSA--------- 210

Query: 268 DASVYINVFITSFAELPGLLTAALLVDRVGRKLS-MTIMFIFVCIFLLPLVTLQSNILLT 326
            A   + + +     + G L   LL DR+GR+   + I  +   + LL L    S  LL 
Sbjct: 211 -AEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLL 269

Query: 327 ALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH 386
             L          F      A E+ P   R T +G+    G +GG + PL+A  L+ +  
Sbjct: 270 VALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGG 329

Query: 387 QTAAILLLEALIVLSVVVILLIP 409
                L+L AL +L+ +++LL+P
Sbjct: 330 YGGVFLILAALALLAALLLLLLP 352

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score = 60.5 bits (147), Expect = 6e-10
 Identities = 41/148 (27%), Positives = 61/148 (41%), Gaps = 39/148 (26%)

Query: 25  FIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPP 84
           ++  F    I+GG  V    GL S  SP YI+                       E  P 
Sbjct: 119 YVPEFVIYRIIGGIGV----GLASMLSPMYIA-----------------------EIAPA 151

Query: 85  SNRGK------WMVVFST----FWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLI 134
             RGK      + ++F      F  +        +W+      WR++ A  AIPA + L+
Sbjct: 152 HIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNT--DGWRYMFASEAIPALLFLM 209

Query: 135 FIVFMPESPRYLCTKGRITDAHNILDKI 162
            + F+PE+PRYL ++G+   A  IL KI
Sbjct: 210 LLYFVPETPRYLMSRGKQEQAEGILRKI 237

Length = 479

>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter

 Score = 54.6 bits (132), Expect = 4e-08
 Identities = 35/119 (29%), Positives = 51/119 (42%), Gaps = 8/119 (6%)

Query: 290 ALLVDRVGRKLSMTIMFIFVCIFLLPLVTL---QSNILL-TALLSGARMFSMGTFIIANI 345
             L DR+GR+  + I  +   +  +PL+       +  L   L+ G  +           
Sbjct: 276 GALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGMALIGGMYTGPMGS 335

Query: 346 FAPEIYPTSMRSTGAGVAYAVGR-IGGMVCPLVAVGLVTSCHQTAAI---LLLEALIVL 400
           F PE++PT +R TGA +AY +   I G   P +A  LV       AI   L   ALI L
Sbjct: 336 FLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALALIGL 394

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394

>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter

 Score = 54.1 bits (130), Expect = 6e-08
 Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 3/103 (2%)

Query: 43  VAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWF-MEFVPPSNRGKWMVVFSTFWTFG 101
              L   F+P YI++ I R + G G+G  +   + + +E  P   R K   +  + +  G
Sbjct: 89  AGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVG 148

Query: 102 SVSEAALAWIVMPI--LTWRWLLALSAIPAFVLLIFIVFMPES 142
           +V  A +  +V+P+    WR L  +S +P    L     +PE+
Sbjct: 149 AVVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEA 191

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 53.5 bits (129), Expect = 9e-08
 Identities = 33/111 (29%), Positives = 57/111 (51%), Gaps = 1/111 (0%)

Query: 31  RMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHV-FFSWFMEFVPPSNRGK 89
           R  +L G L+  +  LL AF+ +   LL+ R L G G G+ +    +   E+ PP  RG+
Sbjct: 64  RRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGR 123

Query: 90  WMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMP 140
            + +FS  +  G++    L  ++   L WRWL  + AI   +L + ++F+ 
Sbjct: 124 ALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL 174

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2

 Score = 53.4 bits (128), Expect = 1e-07
 Identities = 38/147 (25%), Positives = 69/147 (46%), Gaps = 2/147 (1%)

Query: 271 VYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLS 330
           +Y   F+ + A LPG + +ALL+D++GR   +    +  CI    L    S   + ALL 
Sbjct: 597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLC 656

Query: 331 GARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAA 390
                S+  +   ++   E+YP+  R+T  G   A+ +   ++  L+    V    + A 
Sbjct: 657 LFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFV-GITKAAP 715

Query: 391 ILLLEALIVLSVVVILLIPFETKGKEL 417
           IL   A +    ++ L +P +T+G+ L
Sbjct: 716 ILFASAALACGGLLALKLP-DTRGQVL 741

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 55/347 (15%), Positives = 104/347 (29%), Gaps = 68/347 (19%)

Query: 31  RMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGK 89
           R  +L G L+  +  LL  F+ +   LL+LR L G G G+      +   ++ PP  RG+
Sbjct: 62  RRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERGR 121

Query: 90  WMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTK 149
            + + S  +  G+     L  ++  +  WR    + AI A +  +    +          
Sbjct: 122 ALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAALL---------- 171

Query: 150 GRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSG 209
                                                       P     +         
Sbjct: 172 ---------------------------------------LPRPPPESKRPKPAEEAPAPL 192

Query: 210 FSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDA 269
             ++ +L         + L +  F    +   + L    L                +   
Sbjct: 193 VPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQEVL---------------GLSAL 237

Query: 270 SVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMF---IFVCIFLLPLVTLQSNILLT 326
              + + +       G L    L DR+GR+  + +     I   + L  L   +S++ L 
Sbjct: 238 LAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWLL 297

Query: 327 ALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMV 373
             L      +   F   N    ++ P   R T +G+    G +GG +
Sbjct: 298 VALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGAL 344

Length = 346

>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional

 Score = 47.2 bits (112), Expect = 1e-05
 Identities = 50/230 (21%), Positives = 91/230 (39%), Gaps = 21/230 (9%)

Query: 191 EETPLLSSARKRTTVRKSGFSSFLMLFS-PRFFKTTILLWVLY--FGNSFVYYGIVLLAS 247
           EE  L    +   +       S   LF+  +F  T  +  VL+  FG ++  +G  LL +
Sbjct: 199 EEAKLSGKGKHSQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFG--LLPT 256

Query: 248 ELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFI 307
            L+G            E      V   +   +F  + G +   L  DR+G K + +I  +
Sbjct: 257 YLAG------------EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLL 304

Query: 308 FVCIFLLPL--VTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYA 365
              +F+ PL  +   + +LL A L G    ++G   +   F  + +P  +R  G G+ Y 
Sbjct: 305 MSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYN 364

Query: 366 VGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGK 415
           +    G    + A  L  +    AA+  + A    +  ++L+I      +
Sbjct: 365 LAATSGTFNSMAATWLGITMGLGAALTFIVAF--WTATILLIIGLSIPDR 412

Length = 426

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 9/120 (7%)

Query: 29  FSRMSILGGALVTFVAG-LLSAFSPNYISLLILRGLAGAGLGSGHVFFS----WFMEFVP 83
             R  +L G L  F+   LLSA +P++  LL+ R LAG   G   VF+S         VP
Sbjct: 75  LERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHG---VFWSIAAALAARLVP 131

Query: 84  PSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWL-LALSAIPAFVLLIFIVFMPES 142
           P  RG+ + +  T  T  +V    L   +  +  WR   LA++ +    LL+    +P S
Sbjct: 132 PGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLPPS 191

Length = 394

>gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 71/362 (19%), Positives = 126/362 (34%), Gaps = 69/362 (19%)

Query: 30  SRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAG--AGLG---SGHVFFSWFMEFVPP 84
            R+ +  G ++  +  L   FS +   +  L  L G   G+G    G     WF      
Sbjct: 59  PRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWF----SR 114

Query: 85  SNRGKWMVVFSTFWTFGSVSEAALAWIVMPIL-TWRWLLALSAIPAFVL-LIFIVFMPES 142
           S RG W+  ++     G      L    +  L +W W+  +  I A ++ LI  + + +S
Sbjct: 115 SERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDS 174

Query: 143 PRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKR 202
           P+                                S G    +E    +EE    +  ++ 
Sbjct: 175 PQ--------------------------------SCGLPPAEEMP--NEEPDGDAEKKEE 200

Query: 203 TTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYY--GIVLLASELSGSQSKCSSSI 260
              +K  F  +++L          +LW +  G  FVY     +L  S L  +Q K  S  
Sbjct: 201 ELTKKQIFLQYVLL--------NKVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKE 252

Query: 261 LLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQ 320
                   AS    ++      L G L A  L D++       +   F+ + ++ L+   
Sbjct: 253 -------KASWAFTLY--ELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYW 303

Query: 321 SNILLTALLSGARMFSMGTFI-----IANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCP 375
            N     L+    +F++G  +     +  + A E+ P     T AG       +GG++  
Sbjct: 304 LNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAG 363

Query: 376 LV 377
           L 
Sbjct: 364 LP 365

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 379

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 36/182 (19%), Positives = 62/182 (34%), Gaps = 8/182 (4%)

Query: 228 LWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLL 287
           L +L+ G         LL+             +     +  +   + V   S     G L
Sbjct: 1   LLLLFLGFFLSGLDRGLLSP--------ALPLLAEDLGLSASQAGLIVSAFSLGYALGSL 52

Query: 288 TAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFA 347
            A  L DR GR+  + +  +   +  L L    S  LL        +     +  A    
Sbjct: 53  LAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALI 112

Query: 348 PEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILL 407
            E +P   R    G+  A   +G ++ PL+   L  S       L+L  L +L  +++L 
Sbjct: 113 AEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLF 172

Query: 408 IP 409
           + 
Sbjct: 173 LL 174

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 33/142 (23%), Positives = 53/142 (37%)

Query: 275 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARM 334
           +   S         A  L DR GR+  + I  +   + LL L+   S  LL  L     +
Sbjct: 38  LTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGL 97

Query: 335 FSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLL 394
                F  A     + +P   R    G+  A   +G  + PL+   L +     AA L+L
Sbjct: 98  GGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLIL 157

Query: 395 EALIVLSVVVILLIPFETKGKE 416
             L +L+ V+  L+      + 
Sbjct: 158 AILALLAAVLAALLLPRPPPES 179

Length = 346

>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter

 Score = 41.4 bits (97), Expect = 6e-04
 Identities = 24/104 (23%), Positives = 48/104 (46%), Gaps = 1/104 (0%)

Query: 275 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNI-LLTALLSGAR 333
           V  ++   + G      L D +GR+ +     +   + ++P+  + +N+ +L   L   +
Sbjct: 280 VVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQ 339

Query: 334 MFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLV 377
           M   G + I      E +PT  R+ G G  Y +G +GG + P++
Sbjct: 340 MLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPII 383

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405

>gnl|CDD|182433 PRK10406, PRK10406, alpha-ketoglutarate transporter; Provisional

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 39/152 (25%), Positives = 71/152 (46%), Gaps = 21/152 (13%)

Query: 285 GLLTAALLV------------DRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGA 332
           G++TAAL V            D++GR+ SM        +F +P+++   N+       G 
Sbjct: 283 GIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGL 342

Query: 333 RMFSMGTFI------IANIFAPEIYPTSMRSTGAGVAYAVGR-IGGMVCPLVAVGLVTSC 385
            M ++   I      I+ I   E++P  +R+ G G++YAV   + G     VA+ L +  
Sbjct: 343 VMCAL--LIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSIG 400

Query: 386 HQTAAILLLEALIVLSVVVILLIPFETKGKEL 417
            +TA    +  + V++ +V L++  + KG  L
Sbjct: 401 METAFFWYVTLMAVVAFLVSLMLHRKGKGMRL 432

Length = 432

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 38.8 bits (91), Expect = 0.001
 Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 6/113 (5%)

Query: 34  ILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLG-SGHVFFSWFMEFVPPSNRGKWMV 92
           +L G  +  ++  + A S N   L+I R L G G   +     +   +  PP  RG  + 
Sbjct: 31  LLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALG 90

Query: 93  VFSTFWTFGSVSEAALAWIVMPILTWRWL---LALSAIPAFVLLIFIVFMPES 142
           + S     G +    L  ++   L WR     LA+ A+ AF+LL F   +PE+
Sbjct: 91  LMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAF--LLPET 141

Length = 141

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	434
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	100.0
KOG0569	485	consensus Permease of the major facilitator superf	100.0
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	100.0
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	100.0
TIGR00898	505	2A0119 cation transport protein.	100.0
KOG0254	513	consensus Predicted transporter (major facilitator	100.0
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	100.0
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	100.0
PRK10642	490	proline/glycine betaine transporter; Provisional	100.0
PRK10077	479	xylE D-xylose transporter XylE; Provisional	100.0
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	100.0
PRK09952	438	shikimate transporter; Provisional	99.98
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.97
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.97
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.96
PRK15075	434	citrate-proton symporter; Provisional	99.96
PRK12307	426	putative sialic acid transporter; Provisional	99.96
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.95
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.95
TIGR00891	405	2A0112 putative sialic acid transporter.	99.95
PRK11663	434	regulatory protein UhpC; Provisional	99.94
TIGR00895	398	2A0115 benzoate transport.	99.94
TIGR00893	399	2A0114 d-galactonate transporter.	99.94
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.94
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.94
PRK10489	417	enterobactin exporter EntS; Provisional	99.93
PRK03545	390	putative arabinose transporter; Provisional	99.93
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.93
PRK03893	496	putative sialic acid transporter; Provisional	99.93
PRK09705	393	cynX putative cyanate transporter; Provisional	99.93
PRK05122	399	major facilitator superfamily transporter; Provisi	99.92
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.92
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.92
PLN00028	476	nitrate transmembrane transporter; Provisional	99.92
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.92
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.91
PRK03699	394	putative transporter; Provisional	99.91
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.91
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.9
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.9
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.9
TIGR00900	365	2A0121 H+ Antiporter protein.	99.9
PRK12382	392	putative transporter; Provisional	99.9
PRK11010	491	ampG muropeptide transporter; Validated	99.89
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.89
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.89
PRK09874	408	drug efflux system protein MdtG; Provisional	99.88
PRK10091	382	MFS transport protein AraJ; Provisional	99.88
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.88
PRK15011	393	sugar efflux transporter B; Provisional	99.88
PRK10504	471	putative transporter; Provisional	99.88
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.87
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.87
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.87
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.87
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.87
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.86
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.86
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.86
PRK11043	401	putative transporter; Provisional	99.85
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.85
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.84
PRK03633	381	putative MFS family transporter protein; Provision	99.84
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.84
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.84
KOG2532	466	consensus Permease of the major facilitator superf	99.84
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.83
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.83
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.83
PRK10133	438	L-fucose transporter; Provisional	99.82
KOG2533	495	consensus Permease of the major facilitator superf	99.82
PRK11902	402	ampG muropeptide transporter; Reviewed	99.82
PRK10054	395	putative transporter; Provisional	99.82
TIGR00901	356	2A0125 AmpG-related permease.	99.81
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.8
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.8
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.79
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.79
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.78
PRK09528	420	lacY galactoside permease; Reviewed	99.77
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.77
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.75
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.75
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.72
PTZ00207	591	hypothetical protein; Provisional	99.71
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.69
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.69
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.68
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.68
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.68
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.66
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.66
KOG2615	451	consensus Permease of the major facilitator superf	99.66
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.63
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.63
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.59
TIGR00805	633	oat sodium-independent organic anion transporter.	99.56
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.55
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.55
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.53
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.51
PRK09669	444	putative symporter YagG; Provisional	99.49
PRK10642	490	proline/glycine betaine transporter; Provisional	99.48
PRK11462	460	putative transporter; Provisional	99.43
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.43
PF13347	428	MFS_2: MFS/sugar transport protein	99.42
PRK10429	473	melibiose:sodium symporter; Provisional	99.4
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.33
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.32
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.31
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.29
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.29
COG2211	467	MelB Na+/melibiose symporter and related transport	99.24
PRK09848	448	glucuronide transporter; Provisional	99.19
PLN00028	476	nitrate transmembrane transporter; Provisional	99.19
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.16
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.11
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.08
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.08
TIGR00895	398	2A0115 benzoate transport.	99.07
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.07
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.07
PRK10054	395	putative transporter; Provisional	99.06
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.06
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.05
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.05
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.04
TIGR00893	399	2A0114 d-galactonate transporter.	99.03
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.02
PRK10504	471	putative transporter; Provisional	99.01
PRK11663	434	regulatory protein UhpC; Provisional	99.01
PRK03699	394	putative transporter; Provisional	99.01
TIGR00891	405	2A0112 putative sialic acid transporter.	99.01
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.0
PRK12307	426	putative sialic acid transporter; Provisional	99.0
TIGR00900	365	2A0121 H+ Antiporter protein.	98.99
PRK03893	496	putative sialic acid transporter; Provisional	98.98
KOG2563	480	consensus Permease of the major facilitator superf	98.97
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.96
PRK03545	390	putative arabinose transporter; Provisional	98.96
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.95
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	98.93
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	98.92
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.9
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.88
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.87
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.87
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.86
PRK10091	382	MFS transport protein AraJ; Provisional	98.86
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.85
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.84
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	98.83
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	98.81
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.81
PRK09874	408	drug efflux system protein MdtG; Provisional	98.81
PRK15011	393	sugar efflux transporter B; Provisional	98.8
PRK09528	420	lacY galactoside permease; Reviewed	98.8
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	98.8
PRK05122	399	major facilitator superfamily transporter; Provisi	98.79
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	98.78
PRK11043	401	putative transporter; Provisional	98.76
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.74
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.74
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.73
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.73
PRK10489	417	enterobactin exporter EntS; Provisional	98.71
PRK12382	392	putative transporter; Provisional	98.71
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.7
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.69
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	98.68
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	98.66
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.66
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.65
PRK03633	381	putative MFS family transporter protein; Provision	98.63
TIGR00892	455	2A0113 monocarboxylate transporter 1.	98.62
TIGR00898	505	2A0119 cation transport protein.	98.62
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	98.61
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	98.61
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.6
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.6
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	98.58
PRK15075	434	citrate-proton symporter; Provisional	98.57
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.55
KOG2615	451	consensus Permease of the major facilitator superf	98.55
TIGR00897	402	2A0118 polyol permease family. This family of prot	98.55
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.54
PRK09705	393	cynX putative cyanate transporter; Provisional	98.51
KOG2325	488	consensus Predicted transporter/transmembrane prot	98.5
PRK09952	438	shikimate transporter; Provisional	98.5
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.49
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.46
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.45
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.44
PRK11010	491	ampG muropeptide transporter; Validated	98.39
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.37
KOG0569	485	consensus Permease of the major facilitator superf	98.36
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.36
TIGR00901	356	2A0125 AmpG-related permease.	98.35
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	98.35
KOG3098	461	consensus Uncharacterized conserved protein [Funct	98.32
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.31
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	98.3
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.29
PRK10133	438	L-fucose transporter; Provisional	98.25
PTZ00207	591	hypothetical protein; Provisional	98.24
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.2
KOG0254	513	consensus Predicted transporter (major facilitator	98.17
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.16
PRK11902	402	ampG muropeptide transporter; Reviewed	98.16
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.15
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	98.14
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.13
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.13
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.12
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	98.08
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.04
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	98.02
COG0477	338	ProP Permeases of the major facilitator superfamil	97.95
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	97.94
TIGR00805	633	oat sodium-independent organic anion transporter.	97.88
KOG2532	466	consensus Permease of the major facilitator superf	97.86
KOG2816	463	consensus Predicted transporter ADD1 (major facili	97.82
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	97.8
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	97.8
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	97.74
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	97.71
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	97.69
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	97.65
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	97.61
KOG3626	735	consensus Organic anion transporter [Secondary met	97.58
PRK10429	473	melibiose:sodium symporter; Provisional	97.56
TIGR00788	468	fbt folate/biopterin transporter. The only functio	97.54
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	97.53
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	97.48
KOG2533	495	consensus Permease of the major facilitator superf	97.47
PRK09848	448	glucuronide transporter; Provisional	97.46
PRK09669	444	putative symporter YagG; Provisional	97.44
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.37
KOG3762	618	consensus Predicted transporter [General function	97.29
COG2270	438	Permeases of the major facilitator superfamily [Ge	97.28
KOG3762	618	consensus Predicted transporter [General function	97.21
PF13347	428	MFS_2: MFS/sugar transport protein	97.17
PRK11462	460	putative transporter; Provisional	97.09
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	97.09
KOG3810	433	consensus Micronutrient transporters (folate trans	97.08
COG2211	467	MelB Na+/melibiose symporter and related transport	96.99
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	96.81
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	96.59
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	96.58
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	96.48
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	96.39
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	96.29
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	96.26
KOG0637	498	consensus Sucrose transporter and related proteins	96.15
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	96.12
KOG2563	480	consensus Permease of the major facilitator superf	96.06
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	95.73
KOG2325	488	consensus Predicted transporter/transmembrane prot	95.62
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	95.45
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	95.15
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	94.91
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	94.89
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	94.63
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	94.35
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	93.89
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	93.44
COG0477	338	ProP Permeases of the major facilitator superfamil	93.14
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	90.23
PF12832	77	MFS_1_like: MFS_1 like family	88.85
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	88.67
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	84.7
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	84.12
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	81.73
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	80.44

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=100.00  E-value=9.3e-52  Score=373.12  Aligned_cols=406  Identities=37%  Similarity=0.566  Sum_probs=334.3

Q ss_pred             CCccccccccCCCCchhhhhhh---hhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCchhhhhh
Q 013910            1 MEEGRFSSLLHPDMCPKLLLEP---LYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSW   77 (434)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~~~~~~~   77 (434)
                      |+||+.+.+-+-+-||+++=.=   ...|++|||+.+.++.+...+...+.+.++|+..+.+.|.+.|+|+|+.++..++
T Consensus       110 ~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg~pv~~~~  189 (528)
T KOG0253|consen  110 PSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGGLPVDSAI  189 (528)
T ss_pred             hhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCCccHhHHH
Confidence            4677777776668888664322   4789999999999999999999999999999999999999999999998888888


Q ss_pred             hhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcCCChhHHhhcCChHHHHH
Q 013910           78 FMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHN  157 (434)
Q Consensus        78 ~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~~~~~lpESp~~l~~~~~~~~a~~  157 (434)
                      ..|+.|..+|+..+-+. ..|.+|.+....+++..+...||||..+....|..+...+.+++||||||++.||+.++|.+
T Consensus       190 yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAle  268 (528)
T KOG0253|consen  190 YLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALE  268 (528)
T ss_pred             HHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHH
Confidence            89999999999998877 99999999999999999999999999999889999888889999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCCCCccCCCCCCCcccccCCCCccccccccccccccccccchhhhccCcchHHHHHHHHHHHHHHHH
Q 013910          158 ILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSF  237 (434)
Q Consensus       158 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  237 (434)
                      .+++++++|++..+...+.....++.+++      +....+.  +.+..++.-....++++|+.||+++.+|.+||+|.+
T Consensus       269 tL~kiArmNg~qlplgvl~~s~~~~~e~e------~~~~~~~--~~~a~ke~rg~~~nLlsp~lrkttlllw~iwfgnaf  340 (528)
T KOG0253|consen  269 TLHKIARMNGKQLPLGVLESSAIDRQEQE------ESDLDDS--KSSAAKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAF  340 (528)
T ss_pred             HHHHHHHhcCCCCCcceeeeehhhhhhhh------hhchhhh--hhccccccccchHhhcChHHHHHHHHHHHHHHhhHH
Confidence            99999999998776554433322221111      0000000  111112233456688999999999999999999999


Q ss_pred             HHHHHHHHHHhhhcccCCCCccc------ccc---cCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHH
Q 013910          238 VYYGIVLLASELSGSQSKCSSSI------LLS---ENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIF  308 (434)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~------~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~  308 (434)
                      .||+..++...+..+...|+...      ...   .......-|.+.++.++.++||.++.+++.||+|||+.++.+.++
T Consensus       341 syyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~  420 (528)
T KOG0253|consen  341 SYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLIL  420 (528)
T ss_pred             HHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHH
Confidence            99999998877765433222110      000   112334558999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhhhcchh
Q 013910          309 VCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQT  388 (434)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~  388 (434)
                      ++++++.+.........+.+++.+..|..+.+...|+|++|++||.+|++|.|.|.+++|+|++++|++.  +......+
T Consensus       421 f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA--~~~e~s~s  498 (528)
T KOG0253|consen  421 FGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA--MRAELSTS  498 (528)
T ss_pred             HHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH--HHhcccee
Confidence            9999888776655556667788888899999999999999999999999999999999999999999988  34434456


Q ss_pred             hHHHHHHHHHHHHHHHHHhcccccCCccc
Q 013910          389 AAILLLEALIVLSVVVILLIPFETKGKEL  417 (434)
Q Consensus       389 ~~~~~~~~~~~i~~~~~~~~~~et~~~~~  417 (434)
                      .+..+++.+++++++.+.++|-|||||++
T Consensus       499 l~i~vy~~~~ilagIavcffPiEtkGR~l  527 (528)
T KOG0253|consen  499 LPIFVYGALFILAGIAVCFFPIETKGRSL  527 (528)
T ss_pred             ehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence            88899999999999999999999999976

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=5.3e-43  Score=338.99  Aligned_cols=370  Identities=22%  Similarity=0.326  Sum_probs=278.4

Q ss_pred             hhhhhhHhhhcchHHHHHHHHHHHHHHHHHhh---cccHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHHH
Q 013910           19 LLEPLYFIFAFSRMSILGGALVTFVAGLLSAF---SPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVF   94 (434)
Q Consensus        19 ~~~~~~~~~~GRr~~l~~~~~~~~i~~~~~~~---~~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~   94 (434)
                      +..+.+.||+|||.++.++.++..++++++.+   .+++++++++|++.|+..|... ....|+.|++|++.||....+.
T Consensus        78 ~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~  157 (485)
T KOG0569|consen   78 FSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLL  157 (485)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHH
Confidence            56678999999999999999999988877755   4789999999999999988875 4456899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH--HHhcccchHHHHHHHHHHHHHHHHHHHhcCCChhHHhh-cCChHHHHHHHHHHHHHcCCCCC
Q 013910           95 STFWTFGSVSEAALAW--IVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCT-KGRITDAHNILDKIAQFNQTSLP  171 (434)
Q Consensus        95 ~~~~~~G~~l~~~l~~--~~~~~~~Wr~~f~~~~i~~~l~~~~~~~lpESp~~l~~-~~~~~~a~~~l~~~~~~~~~~~~  171 (434)
                      +.+..+|.+++..++.  .+.+...|++.+.+..+|+++......++||||+||.. |||.+||+++++++++.++.+  
T Consensus       158 ~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~--  235 (485)
T KOG0569|consen  158 QIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVE--  235 (485)
T ss_pred             HHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcch--
Confidence            9999999999987653  45677789999999999999999999999999999999 899999999999986532210  


Q ss_pred             CCCccCCCCCCCcccccCCCCccccccccccccccccccchhhhcc-CcchHHHHHHHHHHHHH------HHHHHHHHHH
Q 013910          172 SGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLF-SPRFFKTTILLWVLYFG------NSFVYYGIVL  244 (434)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~------~~~~~~~~~~  244 (434)
                               .+.+++.++.++          ++..++...++.+++ ++++|+...+...+.+.      +...+|+..+
T Consensus       236 ---------~~~e~~~~e~~~----------~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i  296 (485)
T KOG0569|consen  236 ---------AEIEEMLREIEE----------EELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSI  296 (485)
T ss_pred             ---------hHHHHHHHHHHH----------hccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHH
Confidence                     000000000000          000001112444555 45666665555444443      3445666655


Q ss_pred             HHHhhhcccCCCCcccccccCcc-chhHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHh---h-
Q 013910          245 LASELSGSQSKCSSSILLSENVQ-DASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT---L-  319 (434)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~---~-  319 (434)
                      +...                +.. +...+. ....+...++..+++.++.||.|||++++.+...+.+..+.+..   . 
T Consensus       297 ~~~a----------------G~~~~~a~~a-n~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~  359 (485)
T KOG0569|consen  297 FKTA----------------GFTPEEAQYA-NLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLS  359 (485)
T ss_pred             HHHc----------------CCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5421                111 122333 44556778999999999999999999999988887765544331   1 


Q ss_pred             h-h-hHHH----HHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHH
Q 013910          320 Q-S-NILL----TALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILL  393 (434)
Q Consensus       320 ~-~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~  393 (434)
                      + . .+..    .+.......+..|+.++.|.+.+|++|++.|+.|.+++..++|+..++..+.++.+.+..|. ..+++
T Consensus       360 ~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~fil  438 (485)
T KOG0569|consen  360 NSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFIL  438 (485)
T ss_pred             HHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHH
Confidence            1 1 1211    12222333455688899999999999999999999999999999999999999988888776 67888


Q ss_pred             HHHHHHHHHHHHHhcccccCCcccccccccccCc
Q 013910          394 LEALIVLSVVVILLIPFETKGKELVNTIDGVSNS  427 (434)
Q Consensus       394 ~~~~~~i~~~~~~~~~~et~~~~~~e~~~~~~~~  427 (434)
                      +++.+.+..+..+++.||||||+..|+.++.++.
T Consensus       439 F~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~~  472 (485)
T KOG0569|consen  439 FVIPLAIFLIYLYRYLPETKGRTPYEIIEELEKR  472 (485)
T ss_pred             HHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHhC
Confidence            9999999999999999999999999998876654

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=100.00  E-value=9.7e-42  Score=350.33  Aligned_cols=395  Identities=25%  Similarity=0.382  Sum_probs=283.7

Q ss_pred             hhhhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCc-hhhhhhhhhccCCCcchhHHHHHHHHHH
Q 013910           21 EPLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWT   99 (434)
Q Consensus        21 ~~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~   99 (434)
                      ..++.||+|||+.+++++++++++++++++++++..++++|++.|+|.|+. ++...++.|++|+++||+..++.+.++.
T Consensus       222 ~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~  301 (742)
T TIGR01299       222 WGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWM  301 (742)
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence            357899999999999999999999999999999999999999999999876 4567789999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhc-------------ccchHHHHHHHHHHHHHHHHHHHhcCCChhHHhhcCChHHHHHHHHHHHHHc
Q 013910          100 FGSVSEAALAWIVMP-------------ILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFN  166 (434)
Q Consensus       100 ~G~~l~~~l~~~~~~-------------~~~Wr~~f~~~~i~~~l~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~  166 (434)
                      +|.++++.+++.+.+             ..+||+++++.++|+++.++.++++||||+|+..++|.+||.+.++++++.|
T Consensus       302 iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n  381 (742)
T TIGR01299       302 IGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTN  381 (742)
T ss_pred             HHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCC
Confidence            999999988766543             2479999999999988888888899999999999999999999999998766


Q ss_pred             CCCCCC--CCccC---CCCCCCcccccCCCCcc--ccccccccccccccccchhhhccCcchHHHHHHHHHHHHHHHHHH
Q 013910          167 QTSLPS--GNLTS---DGTNDLDEEFSTSEETP--LLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVY  239 (434)
Q Consensus       167 ~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  239 (434)
                      .+....  .....   +...+.++..+..+...  ..+...+........+..+..+|++++++++++++.+|++..+.|
T Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~~y  461 (742)
T TIGR01299       382 MRAKGHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGY  461 (742)
T ss_pred             CCCcCchhHHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHHHH
Confidence            432110  00000   00000000000000000  000000000011112234667889999999999999999999999


Q ss_pred             HHHHHHHHhhhccc---C--------------------------------------------------------------
Q 013910          240 YGIVLLASELSGSQ---S--------------------------------------------------------------  254 (434)
Q Consensus       240 ~~~~~~~~~~~~~~---~--------------------------------------------------------------  254 (434)
                      |++..|.|.+....   .                                                              
T Consensus       462 ygl~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  541 (742)
T TIGR01299       462 YGLSVWFPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTS  541 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccc
Confidence            99999988653210   0                                                              


Q ss_pred             ------CCCccc-----------------------cc-c--cC-------ccchhHHHHHHHHHhhhhhHHHHHHHHHHh
Q 013910          255 ------KCSSSI-----------------------LL-S--EN-------VQDASVYINVFITSFAELPGLLTAALLVDR  295 (434)
Q Consensus       255 ------~~~~~~-----------------------~~-~--~~-------~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr  295 (434)
                            +|.-..                       +. .  .+       ......|...++.+++.++|.+++++++||
T Consensus       542 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr  621 (742)
T TIGR01299       542 SNTFFKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDK  621 (742)
T ss_pred             cchhhhccchhhhhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  000000                       00 0  00       000124666777788999999999999999


Q ss_pred             hchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHH
Q 013910          296 VGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCP  375 (434)
Q Consensus       296 ~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p  375 (434)
                      +|||++++++.++.+++.+.+.+..+......+.+...++..+.++..+.+.+|++|++.|++++|++++.+++|++++|
T Consensus       622 ~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp  701 (742)
T TIGR01299       622 IGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGI  701 (742)
T ss_pred             hCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999888887776665544332222222222222333456678889999999999999999999999999999999


Q ss_pred             HHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccCCccc
Q 013910          376 LVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKEL  417 (434)
Q Consensus       376 ~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~et~~~~~  417 (434)
                      ++.+.+.+. +...++++++++.++++++.+++ |||+++.+
T Consensus       702 ~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~~L-PET~~~~l  741 (742)
T TIGR01299       702 LIFGSFVGI-TKAAPILFASAALACGGLLALKL-PDTRGQVL  741 (742)
T ss_pred             HHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHhC-CCCccccc
Confidence            998877664 34567777888878877777766 79999865

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=100.00  E-value=1.7e-39  Score=327.70  Aligned_cols=376  Identities=21%  Similarity=0.272  Sum_probs=252.3

Q ss_pred             hhhhHhhhcchHHHHHHHHHHHHHHHHHhhccc------HHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHH
Q 013910           21 EPLYFIFAFSRMSILGGALVTFVAGLLSAFSPN------YISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVV   93 (434)
Q Consensus        21 ~~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~------~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~   93 (434)
                      ..++.||+|||+.+.++.+++.+++++++++++      +..++++|++.|++.|... ....|++|++|+++||+..++
T Consensus        76 ~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~  155 (502)
T TIGR00887        76 FGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAA  155 (502)
T ss_pred             HHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHH
Confidence            346899999999999999999999999888876      7899999999999999864 566789999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhc-----------------------ccchHHHHHHHHHHHHHHHHHHHhcCCChhHHhhcC
Q 013910           94 FSTFWTFGSVSEAALAWIVMP-----------------------ILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKG  150 (434)
Q Consensus        94 ~~~~~~~G~~l~~~l~~~~~~-----------------------~~~Wr~~f~~~~i~~~l~~~~~~~lpESp~~l~~~~  150 (434)
                      .+.++.+|.++++.++..+..                       .++||++|.++++|+++..+.++++||||+|+..|+
T Consensus       156 ~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~  235 (502)
T TIGR00887       156 VFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVA  235 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhC
Confidence            999999999998887765421                       247999999999999988888889999999999998


Q ss_pred             ChH-HHHHHHHHHHHHcCCCCCCCCccCCCCCCCcccccCCCCccccccccccccccccccchhhhccC----cchHHHH
Q 013910          151 RIT-DAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFS----PRFFKTT  225 (434)
Q Consensus       151 ~~~-~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  225 (434)
                      |.+ ++.+.+++..+.+.   +++      .++.++..++          +++   .+   .+++++++    +++++.+
T Consensus       236 ~~~~~a~~~~~~~~~~~~---~~~------~~~~~~~~~~----------~~~---~~---~~~~~l~~~~~~~~~~~~~  290 (502)
T TIGR00887       236 KDVEQAASDMSAVLQVKI---EAE------PDEVEKASTA----------VEV---PK---ASWSDFFTHFFKWRHGKHL  290 (502)
T ss_pred             cchHHHHHHHHHHhcccc---ccC------cccccchhcc----------ccc---hh---hhHHHHHHHHhhhHHHHHH
Confidence            875 46766666542110   000      0000000000          000   00   12233332    2333444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCcccccc-cCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHH
Q 013910          226 ILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLS-ENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTI  304 (434)
Q Consensus       226 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~  304 (434)
                      +.+...++.+.+.+|+...+.+.+....+......... ....-........+..++.++|.+++++++||+|||+.++.
T Consensus       291 ~~~~~~~~~~~~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~  370 (502)
T TIGR00887       291 LGTAGSWFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLM  370 (502)
T ss_pred             HHHHHHHHHHHHHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHH
Confidence            44455566667777877665554432211100000000 00000011112334455677899999999999999999887


Q ss_pred             HHHHHHHHHHHHHhhh---h-hHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHH
Q 013910          305 MFIFVCIFLLPLVTLQ---S-NILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVG  380 (434)
Q Consensus       305 ~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~  380 (434)
                      +..+.++.+..+....   . ............++..+..+..|.+++|++|++.|+++.|+.+++++++++++|++.++
T Consensus       371 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~  450 (502)
T TIGR00887       371 GFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLY  450 (502)
T ss_pred             HHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhh
Confidence            7666555443332211   1 11111111122222345566788899999999999999999999999999999999998


Q ss_pred             Hhhhc----------chhhHHHHHHHHHHHHHHHHHhcccccCCcccccccc
Q 013910          381 LVTSC----------HQTAAILLLEALIVLSVVVILLIPFETKGKELVNTID  422 (434)
Q Consensus       381 l~~~~----------g~~~~~~~~~~~~~i~~~~~~~~~~et~~~~~~e~~~  422 (434)
                      +.+..          +....+++++++++++.+.. ++.||||+|+++|+.+
T Consensus       451 l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~-~~lpEt~~~~leei~~  501 (502)
T TIGR00887       451 LAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFT-LLIPETKGKSLEELSG  501 (502)
T ss_pred             hhccccccccccccccchHHHHHHHHHHHHHHHHh-eEeccCCCCCHHhhhC
Confidence            87742          22346778888888776655 5668999999988654

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00898 2A0119 cation transport protein

Probab=100.00  E-value=4.7e-37  Score=310.65  Aligned_cols=353  Identities=33%  Similarity=0.568  Sum_probs=266.3

Q ss_pred             hhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCc-hhhhhhhhhccCCCcchhHHHHHHHHHHHH
Q 013910           23 LYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFG  101 (434)
Q Consensus        23 ~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G  101 (434)
                      .+.||+|||++++++.++..+++++.++++|+..++++|++.|++.+.. .....++.|++|+++|++..++.+.++.+|
T Consensus       149 ~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g  228 (505)
T TIGR00898       149 YLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLG  228 (505)
T ss_pred             HhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHH
Confidence            5899999999999999999999999999999999999999999999885 456678899999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcCCChhHHhhcCChHHHHHHHHHHHHHcCCCCCCCCccCCCCC
Q 013910          102 SVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTN  181 (434)
Q Consensus       102 ~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~  181 (434)
                      .++++.+++.+.   +||+.|++.+++.++..+..+++||||+|+..++|.+++.+.+++.++.++.+.+++.       
T Consensus       229 ~~~~~~~~~~~~---~wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~-------  298 (505)
T TIGR00898       229 LVLLPLVAYFIP---DWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEV-------  298 (505)
T ss_pred             HHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHH-------
Confidence            999998887764   4999999999998887777788999999999999999999999998877654211100       


Q ss_pred             CCcccccCCCCccccccccccccccccccchhhhcc-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccc
Q 013910          182 DLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLF-SPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSI  260 (434)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (434)
                        .+.  +.+++      .+..   ++ ....++++ +++.++.+...+..++.+.+.+|++..+.+.+.          
T Consensus       299 --~~~--~~~~~------~~~~---~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  354 (505)
T TIGR00898       299 --LSL--SLEKD------LSSS---KK-QYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGNLG----------  354 (505)
T ss_pred             --Hhh--hhhhh------hhhc---cC-CCcHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhccccccC----------
Confidence              000  00000      0000   00 01233444 456666666667777777777777665443221          


Q ss_pred             ccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHHHHhh
Q 013910          261 LLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSN--ILLTALLSGARMFSMG  338 (434)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  338 (434)
                              .+.+...++.++.++++.+++++++||+|||+.+..+.+++++.++.+....+.  +......+...++..+
T Consensus       355 --------~~~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (505)
T TIGR00898       355 --------GNIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITS  426 (505)
T ss_pred             --------CChHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Confidence                    123556667778889999999999999999999988877777665544432221  2222233333334445


Q ss_pred             hhhhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccCCcccc
Q 013910          339 TFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKELV  418 (434)
Q Consensus       339 ~~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~et~~~~~~  418 (434)
                      .++..+.+.+|++|++.|+++.|+.++++++|++++|++.+ +.+ .+...++++++++++++++..+++ |||++++++
T Consensus       427 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~l-pet~~~~l~  503 (505)
T TIGR00898       427 AFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGE-KWLFLPLVLFGGLALLAGILTLFL-PETKGVPLP  503 (505)
T ss_pred             HHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHH-HHHhhHHHHHHHHHHHHHHHHHcC-cCCCCCCCC
Confidence            56778899999999999999999999999999999999887 433 345567788888888887776655 799999988


Q ss_pred             cc
Q 013910          419 NT  420 (434)
Q Consensus       419 e~  420 (434)
                      |+
T Consensus       504 ~t  505 (505)
T TIGR00898       504 ET  505 (505)
T ss_pred             CC
Confidence            74

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=100.00  E-value=1.3e-35  Score=299.63  Aligned_cols=369  Identities=23%  Similarity=0.341  Sum_probs=263.4

Q ss_pred             hhhhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHHHHHHHH
Q 013910           21 EPLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWT   99 (434)
Q Consensus        21 ~~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~   99 (434)
                      .....|++|||++++++.+++.++++++++++|+.+++++|++.|+|.|... +...|.+|.+|++.||...+..+..+.
T Consensus       109 ~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~  188 (513)
T KOG0254|consen  109 AGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFIT  188 (513)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHH
Confidence            3469999999999999999999999999999999999999999999999875 556689999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHHHHHHHhcCCChhHHhhcCChHHHHHHHHHHHHHcCCCCCCCCccCC
Q 013910          100 FGSVSEAALAWIVMPI-LTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSD  178 (434)
Q Consensus       100 ~G~~l~~~l~~~~~~~-~~Wr~~f~~~~i~~~l~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~  178 (434)
                      +|.+++..+++...+. .+||+.+.+..+|+++..+..+++||||+|+.++||.++|+++++++.+.++.+         
T Consensus       189 ~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~---------  259 (513)
T KOG0254|consen  189 IGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPED---------  259 (513)
T ss_pred             HHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcc---------
Confidence            9999997766665433 589999999999999998888889999999999999999999999987532100         


Q ss_pred             CCCCCcccccCCCCccccccccccccccccccchhhhccCcchHHHHHHHHHHHHHHHH------HHHHHHHHHHhhhcc
Q 013910          179 GTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSF------VYYGIVLLASELSGS  252 (434)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~  252 (434)
                      .+.+.++..     ....   .+...  ......+.+++.++.+++..+...+...+.+      .||+..++...    
T Consensus       260 ~~~~~~~~~-----~~~~---~~~~~--~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~----  325 (513)
T KOG0254|consen  260 VEVELELLK-----IKLL---VEAEV--AEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSA----  325 (513)
T ss_pred             hHHHHHHHH-----HHHH---Hhhhc--ccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhc----
Confidence            000000000     0000   00000  0000124455556677777665444433332      23443332211    


Q ss_pred             cCCCCcccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHh--hh--h-------
Q 013910          253 QSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT--LQ--S-------  321 (434)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~--~~--~-------  321 (434)
                                  +..+.. ....++.++.++++.+++.++.||+|||+.++.+.....+..+.+..  ..  .       
T Consensus       326 ------------g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~  392 (513)
T KOG0254|consen  326 ------------GLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKG  392 (513)
T ss_pred             ------------CCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccc
Confidence                        111111 45667777888999999999999999999999887766655443321  11  0       


Q ss_pred             -hHHHH-HHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHH
Q 013910          322 -NILLT-ALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIV  399 (434)
Q Consensus       322 -~~~~~-~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~  399 (434)
                       .+... ........+..+..++.|.+.+|++|.+.|+++.+++..+++..+.+....++.+....+....+.++++.+.
T Consensus       393 ~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~  472 (513)
T KOG0254|consen  393 AGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICL  472 (513)
T ss_pred             hhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence             11111 1122222344566788899999999999999999999999999888777776665554322356667777777


Q ss_pred             HHHH-HHHhcccccCCccccccccccc
Q 013910          400 LSVV-VILLIPFETKGKELVNTIDGVS  425 (434)
Q Consensus       400 i~~~-~~~~~~~et~~~~~~e~~~~~~  425 (434)
                      +... +++++.|||||++++|+.+...
T Consensus       473 ~~~~~fv~~~~pETkg~sleei~~~~~  499 (513)
T KOG0254|consen  473 LSLIIFVFFFVPETKGLTLEEINELFE  499 (513)
T ss_pred             HHHHHHheEEcccCCCCcHHHHHHHHH
Confidence            7777 8899999999999998866443

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=100.00  E-value=1.1e-34  Score=294.07  Aligned_cols=364  Identities=32%  Similarity=0.450  Sum_probs=271.7

Q ss_pred             hHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHHHHHHHHHHH
Q 013910           24 YFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGS  102 (434)
Q Consensus        24 ~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~  102 (434)
                      +.||+|||++++.++++.+++++.+++++|+..+++.|+++|++.++.. +...+++|+.++++|+.+..+....+..|.
T Consensus       141 lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~~~  220 (521)
T KOG0255|consen  141 LSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTLGGFFFVGGL  220 (521)
T ss_pred             hHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999999988764 667788999999999999999555666555


Q ss_pred             HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcCCChhHHhhcCChHHHHHHHHHHHHHcCCCCCCCCccCCCCCC
Q 013910          103 VSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTND  182 (434)
Q Consensus       103 ~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~  182 (434)
                      +..+..+++..   +||+.+++..+|+++.++.++..||||||+..+||.++|.+.++++++.|+.+....+.       
T Consensus       221 ~~~~~~a~~~~---~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~-------  290 (521)
T KOG0255|consen  221 MLPAGAAYITR---DWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKEL-------  290 (521)
T ss_pred             HHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHH-------
Confidence            55555555542   99999999999999887777777799999999999999999999999877432211100       


Q ss_pred             CcccccCCCCccccccccccccccccccchhhhcc-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCcccc
Q 013910          183 LDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLF-SPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSIL  261 (434)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (434)
                      .+...   .     .+.++.  ...++...+.+++ .++.++.++.+...++.....||++.+....+.           
T Consensus       291 ~~~~~---~-----~~~~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~~~~~~lg-----------  349 (521)
T KOG0255|consen  291 LRLEL---L-----LRPLKL--LFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLSLNVSGLG-----------  349 (521)
T ss_pred             HHHHH---H-----hhHhhh--hccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhcC-----------
Confidence            00000   0     000000  0001111244444 456888888888888888889999877654332           


Q ss_pred             cccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhh--hh-HHHHHHHHHHHHHHhh
Q 013910          262 LSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQ--SN-ILLTALLSGARMFSMG  338 (434)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~  338 (434)
                             .+.|....+......++....+...|+.|||..+..+..+..+.++...+..  .. +........+.++...
T Consensus       350 -------~~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (521)
T KOG0255|consen  350 -------GNIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGS  422 (521)
T ss_pred             -------chHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHH
Confidence                   3456666676778899999999999999999999988888777666554422  11 1233344444555556


Q ss_pred             hhhhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccCCcccc
Q 013910          339 TFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKELV  418 (434)
Q Consensus       339 ~~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~et~~~~~~  418 (434)
                      .+.+.+.+.+|++||..|+++.+.++.+++++++++|++...... ........+++..+.+.+++...+.|||+++.++
T Consensus       423 ~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~  501 (521)
T KOG0255|consen  423 AFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ-MFPLLGLILFGWLALLLGLLSLLLLPETKGKPLP  501 (521)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHHHHHHHHhcCcccCCCCCc
Confidence            667779999999999999999999999999999999987653322 2333344446777788888887788999999999


Q ss_pred             cccccccC
Q 013910          419 NTIDGVSN  426 (434)
Q Consensus       419 e~~~~~~~  426 (434)
                      |+.++.++
T Consensus       502 ~t~~~~~~  509 (521)
T KOG0255|consen  502 GTLLDAEN  509 (521)
T ss_pred             hhHHHHHh
Confidence            88777663

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=100.00  E-value=2.9e-42  Score=343.77  Aligned_cols=368  Identities=29%  Similarity=0.485  Sum_probs=258.0

Q ss_pred             hhhhhhHhhhcchHHHHHHHHHHHHHHHHHhhcc---cHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHHH
Q 013910           19 LLEPLYFIFAFSRMSILGGALVTFVAGLLSAFSP---NYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVF   94 (434)
Q Consensus        19 ~~~~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~---~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~   94 (434)
                      ++.+.+.||+|||+++.++.++..+++++.++++   |+..+.++|+++|+|.|... +...|+.|.+|+++||+..++.
T Consensus        64 ~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~  143 (451)
T PF00083_consen   64 LIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLF  143 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4445689999999999999999999999999999   99999999999999999875 5567889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcc---cchHHHHHHHHHHHHHHHHHHHhcCCChhHHhhcCChHHHHHHHHHHHHHcCCCCC
Q 013910           95 STFWTFGSVSEAALAWIVMPI---LTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLP  171 (434)
Q Consensus        95 ~~~~~~G~~l~~~l~~~~~~~---~~Wr~~f~~~~i~~~l~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~  171 (434)
                      +.++.+|.+++..+++...+.   ++||+.+.+..+|+++..+..+++||||+|+..|+|.|||++.++++++.+..+  
T Consensus       144 ~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~--  221 (451)
T PF00083_consen  144 QLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIED--  221 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccceeccccccccccccccccccccccc--
Confidence            999999999998887765433   459999999999998888888899999999999999999999998854321110  


Q ss_pred             CCCccCCCCCCCcccccCCCCccccccccccccccccccchhhhccCc-chHHHHHHHHHHHHHHHHHH-HHHHHHHHhh
Q 013910          172 SGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSP-RFFKTTILLWVLYFGNSFVY-YGIVLLASEL  249 (434)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~  249 (434)
                               ++.+++.++.++.+          +.+   ..+.++++. +++++..........+.+.. +....+.+.+
T Consensus       222 ---------~~~~~~~~~~~~~~----------~~~---~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i  279 (451)
T PF00083_consen  222 ---------EEIEEIKAEKKESQ----------ESK---ASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSI  279 (451)
T ss_pred             ---------cccccccccccccc----------ccc---eeeeecccccccccccccccccccccccccccccccccccc
Confidence                     01111111000000          000   123334433 33444444333332222211 1122222222


Q ss_pred             hcccCCCCcccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHH---h--hhh---
Q 013910          250 SGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLV---T--LQS---  321 (434)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~---~--~~~---  321 (434)
                      ....           +... . +...++..+..+++.+++.+++||+|||+.++.+..+++++...+.   .  ...   
T Consensus       280 ~~~~-----------~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (451)
T PF00083_consen  280 FENA-----------GISN-S-FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSW  346 (451)
T ss_pred             cccc-----------cccc-c-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            1110           0111 1 2333455566777888888999999999998887766665444332   1  111   


Q ss_pred             -hHHHHHHHHHH-HHHHhhhhhhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHH
Q 013910          322 -NILLTALLSGA-RMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIV  399 (434)
Q Consensus       322 -~~~~~~~~~~~-~~~~~~~~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~  399 (434)
                       ........... ..+..+..+..+.+.+|+||++.|+++.|+++.++++++++.|++.+.+.+..+....+.+++++++
T Consensus       347 ~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~  426 (451)
T PF00083_consen  347 WSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCL  426 (451)
T ss_pred             cccccceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHH
Confidence             11111111111 1223355677889999999999999999999999999999999988877766554567788888889


Q ss_pred             HHHHHHHhcccccCCccccccccc
Q 013910          400 LSVVVILLIPFETKGKELVNTIDG  423 (434)
Q Consensus       400 i~~~~~~~~~~et~~~~~~e~~~~  423 (434)
                      +..++.+++.||||||+++|+.++
T Consensus       427 i~~i~~~~~lpET~g~~l~ei~~~  450 (451)
T PF00083_consen  427 IAIIFVYFFLPETKGKTLEEIQEM  450 (451)
T ss_pred             HHHhheeEEEeeCCCCCHHHHHhh
Confidence            999999999999999999998753

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=100.00  E-value=3e-32  Score=274.01  Aligned_cols=340  Identities=15%  Similarity=0.156  Sum_probs=220.3

Q ss_pred             hhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHH--------HHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHH
Q 013910           23 LYFIFAFSRMSILGGALVTFVAGLLSAFSPNYIS--------LLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVV   93 (434)
Q Consensus        23 ~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~--------l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~   93 (434)
                      .+.||+|||+++..+.++++++++++++++|+.+        ++++|+++|+|.|+.. +...+++|++|+++||++.++
T Consensus        79 ~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~  158 (490)
T PRK10642         79 MLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSW  158 (490)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHH
Confidence            5899999999999999999999999999999975        8999999999999875 556788999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHh--------cccchHHHHHHHHHHHHHHHHHHHhcCCChhHHhhcCChHHHHHHHHHHHHH
Q 013910           94 FSTFWTFGSVSEAALAWIVM--------PILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQF  165 (434)
Q Consensus        94 ~~~~~~~G~~l~~~l~~~~~--------~~~~Wr~~f~~~~i~~~l~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~  165 (434)
                      .+.+..+|.++++.+...+.        +.+|||++|++.++++++.++++..+||||+|...+++.++..+        
T Consensus       159 ~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~--------  230 (490)
T PRK10642        159 LDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDR--------  230 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhcc--------
Confidence            99999999888886654332        35799999999887777666667789999998643322111000        


Q ss_pred             cCCCCCCCCccCCCCCCCcccccCCCCccccccccccccccccccchhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 013910          166 NQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLL  245 (434)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  245 (434)
                                        +.. .+  +             .+.   ++..++++ +++.+.......+.....+|+...+
T Consensus       231 ------------------~~~-~~--~-------------~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  272 (490)
T PRK10642        231 ------------------EGL-QD--G-------------PKV---SFKEIATK-HWRSLLTCIGLVIATNVTYYMLLTY  272 (490)
T ss_pred             ------------------ccc-cc--c-------------ccC---CHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                              000 00  0             000   11222222 2333333334444455666666665


Q ss_pred             HHhhhcccCCCCcccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHH-HH--hhhhh
Q 013910          246 ASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLP-LV--TLQSN  322 (434)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~-~~--~~~~~  322 (434)
                      .+.+.....          +.+............++.+++.+++++++||+|||+.+..+.+...+.... +.  ...+.
T Consensus       273 ~p~~l~~~~----------g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (490)
T PRK10642        273 MPSYLSHNL----------HYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVI  342 (490)
T ss_pred             HHHHHHHhc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence            554432110          111111122233445667788889999999999999887665433322221 11  11111


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhhhcch-hhHHHHHHHHHHHH
Q 013910          323 ILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQ-TAAILLLEALIVLS  401 (434)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~-~~~~~~~~~~~~i~  401 (434)
                      ...........++..+..+....+.+|++|++.|+++.|+.+.++++++.++|++.+++.+..+. ..+..+..+.++++
T Consensus       343 ~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~  422 (490)
T PRK10642        343 GLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIG  422 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence            11111111111111223345567778999999999999999999999899999999988775442 34444555566666


Q ss_pred             HHHHHhcccccCCccccc
Q 013910          402 VVVILLIPFETKGKELVN  419 (434)
Q Consensus       402 ~~~~~~~~~et~~~~~~e  419 (434)
                      .+..+++ ||++++.+++
T Consensus       423 ~~~~~~~-pes~~~~~~~  439 (490)
T PRK10642        423 LITGVTM-KETANRPLKG  439 (490)
T ss_pred             HHHHHHh-ccccCCCCCC
Confidence            6665555 8998776643

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=100.00  E-value=2.1e-32  Score=274.85  Aligned_cols=363  Identities=21%  Similarity=0.250  Sum_probs=235.7

Q ss_pred             hhhHhhhcchHHHHHHHHHHHHHHHHHhhc------------ccHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcch
Q 013910           22 PLYFIFAFSRMSILGGALVTFVAGLLSAFS------------PNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRG   88 (434)
Q Consensus        22 ~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~------------~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg   88 (434)
                      .++.||+|||+++.++.+++.++.+.++++            +++..++++|+++|++.|... ....++.|++|+++||
T Consensus        76 G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg  155 (479)
T PRK10077         76 GYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRG  155 (479)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhh
Confidence            368999999999999999999888877763            235678999999999999864 5567889999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHh--------cccchHHHHHHHHHHHHHHHHHHHhcCCChhHHhhcCChHHHHHHHH
Q 013910           89 KWMVVFSTFWTFGSVSEAALAWIVM--------PILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILD  160 (434)
Q Consensus        89 ~~~~~~~~~~~~G~~l~~~l~~~~~--------~~~~Wr~~f~~~~i~~~l~~~~~~~lpESp~~l~~~~~~~~a~~~l~  160 (434)
                      +.+++.+.+..+|.++++.++..+.        +..+||++|++.+++.++..+..+++||||+|+..+++.+++.+.++
T Consensus       156 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~  235 (479)
T PRK10077        156 KLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILR  235 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHH
Confidence            9999999999999999887765542        35689999999988888877777789999999998999888877666


Q ss_pred             HHHHHcCCCCCCCCccCCCCCCCcccccCCCCccccccccccccccccccchhhhccCcchHHHHHHH-H-HHHHHHHHH
Q 013910          161 KIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILL-W-VLYFGNSFV  238 (434)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~-~~~~~~~~~  238 (434)
                      +..+.+.               .+...++     ... ..+++ . + .   ....+.  ........ . ...+.+...
T Consensus       236 ~~~~~~~---------------~~~~~~~-----~~~-~~~~~-~-~-~---~~~~~~--~~~~~~~~~~~~~~~~~~~~  286 (479)
T PRK10077        236 KIMGNTL---------------ATQALQE-----IKH-SLDHG-R-K-T---GGKLLM--FGVGVIVIGVMLSVFQQFVG  286 (479)
T ss_pred             HHcCChh---------------HHHHHHH-----HHH-HHHHh-h-h-h---hhhhcc--hhHHHHHHHHHHHHHHHHhC
Confidence            5421100               0000000     000 00000 0 0 0   000010  00011111 1 111112222


Q ss_pred             HHHHHHHHHhhhcccCCCCcccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHh
Q 013910          239 YYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT  318 (434)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~  318 (434)
                      ++....+.+.+....           +..............+.++++.+++++++||+|||+.++.+.++..+..+.+..
T Consensus       287 ~~~~~~~~p~i~~~~-----------g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~  355 (479)
T PRK10077        287 INVVLYYAPEIFKTL-----------GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGT  355 (479)
T ss_pred             hhHHHHHHHHHHHHc-----------CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHH
Confidence            223333333332111           111111223334456677889999999999999999998877766655443322


Q ss_pred             h--hh-hH-HHH-HHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHh------hhcch
Q 013910          319 L--QS-NI-LLT-ALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLV------TSCHQ  387 (434)
Q Consensus       319 ~--~~-~~-~~~-~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~------~~~g~  387 (434)
                      .  .+ .. ... ........+.....+..+.+.+|++|++.|+++.|++++++++++++++.+.+.+.      +..+.
T Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~  435 (479)
T PRK10077        356 AFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHN  435 (479)
T ss_pred             HHhcCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccC
Confidence            1  11 11 111 11111111111223567889999999999999999999999999999887777544      33444


Q ss_pred             hhHHHHHHHHHHHHHHHHHhcccccCCcccccccccc
Q 013910          388 TAAILLLEALIVLSVVVILLIPFETKGKELVNTIDGV  424 (434)
Q Consensus       388 ~~~~~~~~~~~~i~~~~~~~~~~et~~~~~~e~~~~~  424 (434)
                      ...++++++.++++.+..+++.||||+|+++|..+..
T Consensus       436 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~  472 (479)
T PRK10077        436 GFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEALW  472 (479)
T ss_pred             ccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHH
Confidence            5667777888888888888888999999988875543

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.3e-34  Score=268.47  Aligned_cols=372  Identities=22%  Similarity=0.287  Sum_probs=262.7

Q ss_pred             hhhHhhhcchHHHHHHHHHHHHHHHHHhhccc-------HHHHHHHHHHHHhcCCCchh-hhhhhhhccCCCcchhHHHH
Q 013910           22 PLYFIFAFSRMSILGGALVTFVAGLLSAFSPN-------YISLLILRGLAGAGLGSGHV-FFSWFMEFVPPSNRGKWMVV   93 (434)
Q Consensus        22 ~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~-------~~~l~~~R~l~Gig~g~~~~-~~~~~~E~~p~~~Rg~~~~~   93 (434)
                      .++-||+|||+++-..+++.+++++++++..+       ...+...|++.|+|+|+.+. .....+|.+..++||...+.
T Consensus       105 G~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaa  184 (538)
T KOG0252|consen  105 GWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAA  184 (538)
T ss_pred             HHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEE
Confidence            47999999999999999999999998777532       46799999999999999865 45567899999999999988


Q ss_pred             HHHHHHHHHHHHHHHHHHHh-------cc--------cchHHHHHHHHHHHHHHHHHHHhcCCChhHHhhcC-ChHHHHH
Q 013910           94 FSTFWTFGSVSEAALAWIVM-------PI--------LTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKG-RITDAHN  157 (434)
Q Consensus        94 ~~~~~~~G~~l~~~l~~~~~-------~~--------~~Wr~~f~~~~i~~~l~~~~~~~lpESp~~l~~~~-~~~~a~~  157 (434)
                      ......+|.+.|..++..+.       +.        .-||..|.++.+|+++..+.++.+|||++|..... +.++|.+
T Consensus       185 vFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~  264 (538)
T KOG0252|consen  185 VFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAG  264 (538)
T ss_pred             EEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhh
Confidence            88888888887777665531       11        13999999999999999999999999999974332 2222221


Q ss_pred             HHHHHHHHcCCCCCCCCccCCCCCCCcccccCCCCccccccccccccccccccchhhhccCcchHHHHHHHHHHHHHHHH
Q 013910          158 ILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSF  237 (434)
Q Consensus       158 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  237 (434)
                      ..+       ++.+         .+.+++....          ...+..++....+...+..++-++.+.....||...+
T Consensus       265 d~~-------k~~~---------~~~~~~~~~~----------~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDi  318 (538)
T KOG0252|consen  265 DMK-------KVLS---------VDIEAESTAE----------SDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDI  318 (538)
T ss_pred             ccc-------cccc---------cccchhhccc----------cCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            100       0000         0000000000          0001111122233333433355667777788888888


Q ss_pred             HHHHHHHHHHhhhcccCCCCcccccccCccc-hhHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHH
Q 013910          238 VYYGIVLLASELSGSQSKCSSSILLSENVQD-ASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPL  316 (434)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~  316 (434)
                      .+|+..++.+.+........+....   ... .....+.++..+..+||..+...++|++||+...+.++++++++.+.+
T Consensus       319 afy~~nL~~s~I~~~ig~~~~~~~~---~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~  395 (538)
T KOG0252|consen  319 AFYGQNLFQSVIFSAIGVIPSANTY---HELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVI  395 (538)
T ss_pred             hhhccccHHHHHHHhhccCCCcchH---HHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHH
Confidence            9999888877776522221111000   000 112234556667788899999999999999999999999998887776


Q ss_pred             Hhhhhh----HHHHH-HHHHHHHHHhhhhhhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhh-----hcc
Q 013910          317 VTLQSN----ILLTA-LLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVT-----SCH  386 (434)
Q Consensus       317 ~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~-----~~g  386 (434)
                      ....++    ....+ .....++...|+.....++++|.||+++|+++.|++.+.|++|++++.+.+.++.+     ..+
T Consensus       396 ~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g  475 (538)
T KOG0252|consen  396 AGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIG  475 (538)
T ss_pred             cCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCcccc
Confidence            643321    11222 22333445678888999999999999999999999999999999999999998887     556


Q ss_pred             hhhHHHHHHHHHHHHHHHHHhcccccCCccccccccc
Q 013910          387 QTAAILLLEALIVLSVVVILLIPFETKGKELVNTIDG  423 (434)
Q Consensus       387 ~~~~~~~~~~~~~i~~~~~~~~~~et~~~~~~e~~~~  423 (434)
                      ....+++++.+++++.++.+++ ||||+|+++|+.++
T Consensus       476 ~~~v~~i~~~~~~~gi~~T~l~-pEtk~~~leei~~e  511 (538)
T KOG0252|consen  476 VRNVFIILAGCMLLGILFTLLI-PETKGKSLEEISNE  511 (538)
T ss_pred             chHHHHHHHHHHHHhHheeEEe-ecccccCHHHhcCh
Confidence            6677888888888887777666 59999999987543

>PRK09952 shikimate transporter; Provisional

Probab=99.98  E-value=1.7e-29  Score=250.54  Aligned_cols=329  Identities=17%  Similarity=0.171  Sum_probs=211.3

Q ss_pred             hhhhHhhhcchHHHHHHHHHHHHHHHHHhhcccHH--------HHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHH
Q 013910           21 EPLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYI--------SLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWM   91 (434)
Q Consensus        21 ~~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~--------~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~   91 (434)
                      ..++.||+|||+.+..+.++++++++++++++|+.        .++++|+++|++.|+.. ....+..|+.|+++||+..
T Consensus        84 ~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~  163 (438)
T PRK09952         84 FGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYS  163 (438)
T ss_pred             HHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHH
Confidence            35799999999999999999999999999999987        59999999999999874 4567889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh--------cccchHHHHHHHHHHHHHHHHHHHhcCCChhHHhhcCChHHHHHHHHHHH
Q 013910           92 VVFSTFWTFGSVSEAALAWIVM--------PILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIA  163 (434)
Q Consensus        92 ~~~~~~~~~G~~l~~~l~~~~~--------~~~~Wr~~f~~~~i~~~l~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~  163 (434)
                      +..+.++.+|.+++..+...+.        ..++||++|.+.+++.++....+..+||||+|...+++.+++        
T Consensus       164 ~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~~--------  235 (438)
T PRK09952        164 SGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAAA--------  235 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhcccc--------
Confidence            9999999999998877655443        257999999999888777666667789999875322110000        


Q ss_pred             HHcCCCCCCCCccCCCCCCCcccccCCCCccccccccccccccccccchhhhccCcchHHHHHHHHHHHHHHHHHHHHHH
Q 013910          164 QFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIV  243 (434)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  243 (434)
                                          ++      +.+                 ..+.+++  +++.........+...+.+|...
T Consensus       236 --------------------~~------~~~-----------------~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~  270 (438)
T PRK09952        236 --------------------KK------RIP-----------------VIEALLR--HPGAFLKIIALRLCELLTMYIVT  270 (438)
T ss_pred             --------------------cc------cCC-----------------HHHHHHH--chHHHHHHHHHHHHHHHHHHHHH
Confidence                                00      000                 0000111  11112222223333344445444


Q ss_pred             HHHHhhhcccCCCCcccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHh---hh
Q 013910          244 LLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT---LQ  320 (434)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~---~~  320 (434)
                      .+.+.+.....          +.+.........+.....+++..+.++++||+|||+.+..+.++..+..+....   ..
T Consensus       271 ~~~~~y~~~~~----------g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~  340 (438)
T PRK09952        271 AFALNYSTQNL----------GLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQ  340 (438)
T ss_pred             HHHHHHHHHhc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            44333221100          011111111222334556778889999999999999887765554433322211   11


Q ss_pred             hhHHH-HHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHhHHHHhhh-HhHhhHHHHHHHHhhhcc-h-hhHHHHHHH
Q 013910          321 SNILL-TALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGR-IGGMVCPLVAVGLVTSCH-Q-TAAILLLEA  396 (434)
Q Consensus       321 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~a~gi~~~~~~-ig~~~~p~~~~~l~~~~g-~-~~~~~~~~~  396 (434)
                      +.... ........+......+..+.+.+|++|++.|+++.|+.+..++ +++.++|.+.+.+.+..+ . ..++.+.++
T Consensus       341 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~  420 (438)
T PRK09952        341 SIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLA  420 (438)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence            11111 1111111122223345678899999999999999999988876 789999999998887543 2 344555666


Q ss_pred             HHHHHHHHHHhcccccC
Q 013910          397 LIVLSVVVILLIPFETK  413 (434)
Q Consensus       397 ~~~i~~~~~~~~~~et~  413 (434)
                      +++++.+..+.. +||+
T Consensus       421 ~~~i~~v~~~~~-~~~~  436 (438)
T PRK09952        421 GCLISAMTALLM-KDNQ  436 (438)
T ss_pred             HHHHHHHHHHHc-cccc
Confidence            667776666554 5643

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.97  E-value=6.3e-30  Score=255.97  Aligned_cols=370  Identities=21%  Similarity=0.291  Sum_probs=236.1

Q ss_pred             hhHhhhcchHHHHHHHHHHHHHHHHHhhc---ccHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHHHHHHH
Q 013910           23 LYFIFAFSRMSILGGALVTFVAGLLSAFS---PNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFW   98 (434)
Q Consensus        23 ~~~~~~GRr~~l~~~~~~~~i~~~~~~~~---~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~   98 (434)
                      .+.||+|||+.+..+.+++.++.++..+.   .++..++++|++.|+|.|... ....++.|++|+++|+++.++.+.+.
T Consensus        93 ~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~  172 (481)
T TIGR00879        93 WLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAI  172 (481)
T ss_pred             HhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHH
Confidence            58899999999999999999998888554   345689999999999988764 45668899999999999999999999


Q ss_pred             HHHHHHHHHHH---HHHhcccchHHHHHHHHHHHHHHHHHHHhcCCChhHHhhcCChHHHHHHHHHHHHHcCCCCCCCCc
Q 013910           99 TFGSVSEAALA---WIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNL  175 (434)
Q Consensus        99 ~~G~~l~~~l~---~~~~~~~~Wr~~f~~~~i~~~l~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~  175 (434)
                      .+|..+++.++   ....+..+||+.|++.+++.++..+..+++||+|+++..+++.+++.+..++..+.+..+      
T Consensus       173 ~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  246 (481)
T TIGR00879       173 TFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGED------  246 (481)
T ss_pred             HHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCc------
Confidence            99999999988   444567799999999877777776677789999999888888777666554432111000      


Q ss_pred             cCCCCCCCcccccCCCCccccccccccccccccccchhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 013910          176 TSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSK  255 (434)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (434)
                           .+..+... ....   ....++. ..+..+......+++...+........++.+.........+.+.+....  
T Consensus       247 -----~~~~~~~~-~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  314 (481)
T TIGR00879       247 -----KELLDELE-LIDI---KRSIEKR-SVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENA--  314 (481)
T ss_pred             -----HHHHHHHH-HHHH---HHHHHHh-hccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHc--
Confidence                 00000000 0000   0000000 0001111222221111112222222222222221122222222222111  


Q ss_pred             CCcccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHH---hh-hh------hHHH
Q 013910          256 CSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLV---TL-QS------NILL  325 (434)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~---~~-~~------~~~~  325 (434)
                               +.+............+..+++.+++++++||+|||+.+..+..+..+.+..+.   .. ..      ....
T Consensus       315 ---------g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (481)
T TIGR00879       315 ---------GVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVA  385 (481)
T ss_pred             ---------CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHH
Confidence                     01111122334455567788999999999999999988877665554433332   11 11      1111


Q ss_pred             -HHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHH
Q 013910          326 -TALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVV  404 (434)
Q Consensus       326 -~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~  404 (434)
                       .........+..+..+..+.+.+|.+|++.|+++.|+.+.+.+++++++|.+.+.+.+..+....+++++++++++++.
T Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~  465 (481)
T TIGR00879       386 IVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIF  465 (481)
T ss_pred             HHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHH
Confidence             1111111222223345567788999999999999999999999999999999998888766666777888888888888


Q ss_pred             HHhcccccCCccccc
Q 013910          405 ILLIPFETKGKELVN  419 (434)
Q Consensus       405 ~~~~~~et~~~~~~e  419 (434)
                      .+++.||+|+++.+|
T Consensus       466 ~~~~~~~~~~~~~~~  480 (481)
T TIGR00879       466 VYFFLPETKGRTLEE  480 (481)
T ss_pred             HheecccCCCCChhh
Confidence            888889999887654

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.97  E-value=1e-28  Score=244.66  Aligned_cols=324  Identities=19%  Similarity=0.212  Sum_probs=204.0

Q ss_pred             hhhHhhhcchHHHHHHHHHHHHHHHHHhhcccHH--------HHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHH
Q 013910           22 PLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYI--------SLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMV   92 (434)
Q Consensus        22 ~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~--------~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~   92 (434)
                      .++.||+|||+++..+..++.++++++++++|+.        .++++|+++|+|.|+.. ....++.|+.|+++||+..+
T Consensus        84 G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~  163 (432)
T PRK10406         84 GRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYAS  163 (432)
T ss_pred             HHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHH
Confidence            3589999999999999999999999999999875        59999999999999864 55678999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHh--------cccchHHHHHHHHHHHHHHHHHHHhcCCChhHHhhcCChHHHHHHHHHHHH
Q 013910           93 VFSTFWTFGSVSEAALAWIVM--------PILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQ  164 (434)
Q Consensus        93 ~~~~~~~~G~~l~~~l~~~~~--------~~~~Wr~~f~~~~i~~~l~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~  164 (434)
                      +.+.+...|.++++.+...+.        +.+|||++|++.++++++....+..+||+|++..++               
T Consensus       164 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~~---------------  228 (432)
T PRK10406        164 FQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQETRA---------------  228 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHHhh---------------
Confidence            998888888888776544432        257999999999998888776777789988642100               


Q ss_pred             HcCCCCCCCCccCCCCCCCcccccCCCCccccccccccccccccccchhhhccCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 013910          165 FNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVL  244 (434)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  244 (434)
                         .               +      +.                  .+++.+++  +++.........+.....+|+...
T Consensus       229 ---~---------------~------~~------------------~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~  264 (432)
T PRK10406        229 ---L---------------K------EA------------------GSLKGLWR--NRRAFIMVLGFTAAGSLCFYTFTT  264 (432)
T ss_pred             ---h---------------c------cc------------------ccHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHH
Confidence               0               0      00                  00111221  122222222223333455666665


Q ss_pred             HHHhhhcccCCCCcccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHH--hh--h
Q 013910          245 LASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLV--TL--Q  320 (434)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~--~~--~  320 (434)
                      |.+.+.....          +.+.........+......++..+.++++||++||+.+..+..+..+...+..  ..  .
T Consensus       265 ~lp~~l~~~~----------g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~  334 (432)
T PRK10406        265 YMQKYLVNTA----------GMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVS  334 (432)
T ss_pred             HHHHHHHHhc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            5554432110          11111111122233344566677889999999999887765544333222111  11  1


Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHhHHHHhhhH-hHhhHHHHHHHHhhhcchh-hHHHHHHHHH
Q 013910          321 SNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRI-GGMVCPLVAVGLVTSCHQT-AAILLLEALI  398 (434)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~a~gi~~~~~~i-g~~~~p~~~~~l~~~~g~~-~~~~~~~~~~  398 (434)
                      +......+............+..+.+.+|++|++.|+++.|++++++++ ++...|.+.+. .+.+|.+ ..+++.+++.
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~-l~~~g~~~~~~~~~~~~~  413 (432)
T PRK10406        335 SPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALS-LKSIGMETAFFWYVTLMA  413 (432)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHH-HHHhCCCcHHHHHHHHHH
Confidence            1121111111111111122345677889999999999999999999886 34457877774 4544533 3444455666


Q ss_pred             HHHHHHHHhcccccCCccc
Q 013910          399 VLSVVVILLIPFETKGKEL  417 (434)
Q Consensus       399 ~i~~~~~~~~~~et~~~~~  417 (434)
                      +++.+..+++  ++++|+.
T Consensus       414 ~i~~~~~~~l--~~~~~~~  430 (432)
T PRK10406        414 VVAFLVSLML--HRKGKGM  430 (432)
T ss_pred             HHHHHHHHHh--hhccccc
Confidence            6666665553  5666654

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.96  E-value=2.7e-27  Score=228.64  Aligned_cols=313  Identities=17%  Similarity=0.123  Sum_probs=202.6

Q ss_pred             hhhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCchhhhhhhhhccCCCcchhHHHHHHHHHHHH
Q 013910           22 PLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFG  101 (434)
Q Consensus        22 ~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G  101 (434)
                      .++.||+|||+.+.........+.......+|+.+++++|+++|+|.|...+....++|++|+++|+++.++.+.+..+|
T Consensus        47 G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG  126 (368)
T TIGR00903        47 GLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAALGQPFLLNAFAPAASQIREERRDLVISLLSFAMYLG  126 (368)
T ss_pred             HHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhHhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence            57999999999776555444443332333479999999999999998864444555689999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccchHHHHHHHHHHHHHH-HHHHHhcCCChhHHhhcCChHHHHHHHHHHHHHcCCCCCCCCccCCCC
Q 013910          102 SVSEAALAWIVMPILTWRWLLALSAIPAFVL-LIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGT  180 (434)
Q Consensus       102 ~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~-~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~  180 (434)
                      .++++.++..+.+..+||+.|.+.++++++. ++.++++||+|++..   +..+                          
T Consensus       127 ~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~~---~~~~--------------------------  177 (368)
T TIGR00903       127 IIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALPFQAA---EGFG--------------------------  177 (368)
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC---CCcc--------------------------
Confidence            9999999988888899999999977776665 445667999987420   0000                          


Q ss_pred             CCCcccccCCCCccccccccccccccccccchhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccc
Q 013910          181 NDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSI  260 (434)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (434)
                                 .++.              .++++++++++   ........++.....+|++..|.+.+..+..      
T Consensus       178 -----------~~~~--------------~~~~~~ll~~~---~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g------  223 (368)
T TIGR00903       178 -----------FKDA--------------VKEFGALAGRK---DLWIIGAILGFGVALFDNLAIWLEAALRPAG------  223 (368)
T ss_pred             -----------hHHH--------------HHHHHHHHcCh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------
Confidence                       0000              00112222222   1223444555666667777777776653211      


Q ss_pred             ccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchh---HHHHH-HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 013910          261 LLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRK---LSMTI-MFIFVCIFLLPLVTLQSNILLTALLSGARMFS  336 (434)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (434)
                           .+ ..   ......+..+.|.+..++++||..||   +.... ......+.+..+....+......+.....++.
T Consensus       224 -----~s-~~---~~~~~~l~~~~g~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~  294 (368)
T TIGR00903       224 -----LE-DI---AGDAVALAILAGLIGVAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELNRLALFAFIGIAGLLM  294 (368)
T ss_pred             -----CC-hH---HHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhh
Confidence                 01 11   11222333445556678888987654   33222 22222222222222222222222333333334


Q ss_pred             hhhhhhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhc
Q 013910          337 MGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLI  408 (434)
Q Consensus       337 ~~~~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~  408 (434)
                      ...++..+.+.+|++|++.|+++.|+.++.++++++.+|.+.+.+..  +....+.++++..+++++.+.+.
T Consensus       295 ~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~~~~  364 (368)
T TIGR00903       295 LPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIALLL  364 (368)
T ss_pred             hhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHhC
Confidence            45556788899999999999999999999999999999998887663  44566777788888888777544

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK15075 citrate-proton symporter; Provisional

Probab=99.96  E-value=5.2e-26  Score=225.50  Aligned_cols=332  Identities=16%  Similarity=0.210  Sum_probs=199.0

Q ss_pred             hhhhhHhhhcchHHHHHHHHHHHHHHHHHhhcccHH--------HHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhH
Q 013910           20 LEPLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYI--------SLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKW   90 (434)
Q Consensus        20 ~~~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~--------~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~   90 (434)
                      +.+.+.||+|||+.++.+..++.++++++++++|+.        .++++|+++|++.|... ....+++|++|+++||+.
T Consensus        75 ~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~  154 (434)
T PRK15075         75 VLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFY  154 (434)
T ss_pred             HHHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHH
Confidence            346799999999999999999999999999999987        47999999999998864 445688999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH--------hcccchHHHHHHHHHHHHHHHHHHHhcCCChhHHhhcCChHHHHHHHHHH
Q 013910           91 MVVFSTFWTFGSVSEAALAWIV--------MPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKI  162 (434)
Q Consensus        91 ~~~~~~~~~~G~~l~~~l~~~~--------~~~~~Wr~~f~~~~i~~~l~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~  162 (434)
                      .++.+.+..+|..+++.++..+        .+..+||++|++..++.++....+...||++++...+++           
T Consensus       155 ~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~-----------  223 (434)
T PRK15075        155 TSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARKHR-----------  223 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhc-----------
Confidence            9999888888887777766554        246799999998765544333334445665432110000           


Q ss_pred             HHHcCCCCCCCCccCCCCCCCcccccCCCCccccccccccccccccccchhhhccCcchHHHHHHHHHHHHHHHHHHHHH
Q 013910          163 AQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGI  242 (434)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  242 (434)
                                            .     +..+                 .++..  .+.++.........+.+...++.+
T Consensus       224 ----------------------~-----~~~~-----------------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  257 (434)
T PRK15075        224 ----------------------P-----SMRE-----------------IFRSL--AANWRIVLAGMLMVAMTTVSFYLI  257 (434)
T ss_pred             ----------------------c-----cccc-----------------HHHHH--HHhHHHHHHHHHHHHHHHHHHHHH
Confidence                                  0     0000                 00000  011122222222233334445555


Q ss_pred             HHHHHhhhcccCCCCcccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHH--Hh-h
Q 013910          243 VLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPL--VT-L  319 (434)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~--~~-~  319 (434)
                      ..+.+.+..+..          +.+............+.++++..++++++||+|||+.+..+.....+.....  .. .
T Consensus       258 ~~~~p~~l~~~~----------g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~  327 (434)
T PRK15075        258 TVYTPTFGKTVL----------HLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVA  327 (434)
T ss_pred             HHHHHHHHHHhc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHc
Confidence            555544432110          1111112223345556778899999999999999998776544433222111  11 1


Q ss_pred             hhhH-HHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHhHHHHhhhH-hHhhHHHHHHHHhhhcchhh-HHHHHHH
Q 013910          320 QSNI-LLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRI-GGMVCPLVAVGLVTSCHQTA-AILLLEA  396 (434)
Q Consensus       320 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~a~gi~~~~~~i-g~~~~p~~~~~l~~~~g~~~-~~~~~~~  396 (434)
                      .... ..........++.....+..+.+.+|.+|++.|+++.|+.+++++. ++.++|.+.+.+.+..+... ..+.+..
T Consensus       328 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~~~~~~~~~~  407 (434)
T PRK15075        328 APSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDKAAPGYWLSF  407 (434)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCchHHHHHHHH
Confidence            1111 1111111111111222344567789999999999999999888876 58889999998888766421 1211111


Q ss_pred             HHHHHHHHHHhcccccCCccccc
Q 013910          397 LIVLSVVVILLIPFETKGKELVN  419 (434)
Q Consensus       397 ~~~i~~~~~~~~~~et~~~~~~e  419 (434)
                       +.++.+...++..+.++..++.
T Consensus       408 -~~~~~~~~~~~~~~~~~~~~~~  429 (434)
T PRK15075        408 -AAVCGLIATLVLYRRRGARLQA  429 (434)
T ss_pred             -HHHHHHHHHHHhccccchhhhh
Confidence             2222233334445666666654

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.96  E-value=4.6e-26  Score=225.44  Aligned_cols=336  Identities=19%  Similarity=0.213  Sum_probs=209.5

Q ss_pred             hhhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHHHHHHHHH
Q 013910           22 PLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTF  100 (434)
Q Consensus        22 ~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~  100 (434)
                      +.+.||+|||+.+..+.+++.++.++.++++++..++++|+++|+|.|... ....++.|+.|+|+|++..++.+.+..+
T Consensus        74 g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l  153 (426)
T PRK12307         74 GLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGI  153 (426)
T ss_pred             HHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhH
Confidence            468999999999999999999999999999999999999999999988754 4566788999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcCCChhHHhhcCChHHHHHHHHHHHHHcCCCCCCCCccCCCC
Q 013910          101 GSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGT  180 (434)
Q Consensus       101 G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~  180 (434)
                      |.++++.+...+.+..+||+.|++..++.++........||++++...+.+               .+    +       
T Consensus       154 g~~~~~~l~~~l~~~~~w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~---------------~~----~-------  207 (426)
T PRK12307        154 GNIIAAYFMPSFAEAYGWRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLS---------------GK----G-------  207 (426)
T ss_pred             HHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHHHHHCCCChHHHHhhhh---------------cc----c-------
Confidence            999998887777777899999998766655544445557888765321100               00    0       


Q ss_pred             CCCcccccCCCCccccccccccccccccccchhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccc
Q 013910          181 NDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSI  260 (434)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (434)
                         ++  +  +. .     .+   .   .....+..++.+..+.........+......+.+..+.+.+....       
T Consensus       208 ---~~--~--~~-~-----~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  261 (426)
T PRK12307        208 ---KH--S--QS-A-----WS---V---FSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAGE-------  261 (426)
T ss_pred             ---cc--c--cc-c-----hh---h---hhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------
Confidence               00  0  00 0     00   0   000122333333222222222222211111122222222222111       


Q ss_pred             ccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhh-hhHHHH-HHHHHHHHHHhh
Q 013910          261 LLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQ-SNILLT-ALLSGARMFSMG  338 (434)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~  338 (434)
                          +.+............++++++.++.+++.||++||+.+..+.+++.+....+.... ...... ...+.......+
T Consensus       262 ----g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (426)
T PRK12307        262 ----GFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVG  337 (426)
T ss_pred             ----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhccc
Confidence                01111111222344567888999999999999999988877666554443332211 111111 112121112223


Q ss_pred             hhhhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhh-HHHHHHHHHHHHHHHHHhcccccC
Q 013910          339 TFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTA-AILLLEALIVLSVVVILLIPFETK  413 (434)
Q Consensus       339 ~~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~-~~~~~~~~~~i~~~~~~~~~~et~  413 (434)
                      ..+..+.+..|.+|++.|+++.|+.+.++++++.++|.+.+.+.+..+... .++..+..+.++.+...+..||+.
T Consensus       338 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (426)
T PRK12307        338 VGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALTFIVAFWTATILLIIGLSIPDRL  413 (426)
T ss_pred             HhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhccccCChhh
Confidence            344566778899999999999999999999999999999998888766432 233444444444444444445543

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.95  E-value=1.8e-25  Score=219.84  Aligned_cols=323  Identities=23%  Similarity=0.302  Sum_probs=209.7

Q ss_pred             hhhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHHHHHHHHH
Q 013910           22 PLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTF  100 (434)
Q Consensus        22 ~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~  100 (434)
                      ..+.||+|||+.+..+..+..++.++..+++|+..+++.|++.|++.+... ....++.|+.|+++||+..++.+.+..+
T Consensus        71 g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~  150 (406)
T PRK11551         71 GRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPF  150 (406)
T ss_pred             HHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence            468999999999999999999999889999999999999999999987754 4556789999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH-HHHHhcCCChhHHhhcCChHHHHHHHHHHHHHcCCCCCCCCccCCC
Q 013910          101 GSVSEAALAWIVMPILTWRWLLALSAIPAFVLL-IFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDG  179 (434)
Q Consensus       101 G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~-~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~  179 (434)
                      |..+++.++..+.+..+||+.|++.++..++.. ....++||+|++...+++.++.+                       
T Consensus       151 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-----------------------  207 (406)
T PRK11551        151 GGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRA-----------------------  207 (406)
T ss_pred             HHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhh-----------------------
Confidence            999999888777777899999998877655544 34566899987532111000000                       


Q ss_pred             CCCCcccccCCCCccccccccccccccccccchhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCcc
Q 013910          180 TNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSS  259 (434)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (434)
                                    .                 .....++++..+.....+..++.....++....+.+.+..+.+     
T Consensus       208 --------------~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g-----  251 (406)
T PRK11551        208 --------------P-----------------VLRALFGEGRATATLLLWISYFFTLIVLYFLLNWLPSLLVGQG-----  251 (406)
T ss_pred             --------------h-----------------hHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----
Confidence                          0                 0000011111111112222223333333444334443332111     


Q ss_pred             cccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhh
Q 013910          260 ILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGT  339 (434)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (434)
                            .+............+.++++.++.++++||+|||+.+..+.+...+.+..+....+.+..........++..+.
T Consensus       252 ------~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  325 (406)
T PRK11551        252 ------LSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGG  325 (406)
T ss_pred             ------CChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhH
Confidence                  11111122333445678899999999999999999887755544444333332222222212222222223344


Q ss_pred             hhhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhh-HHHHHHHHHHHHHHHHHhcc
Q 013910          340 FIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTA-AILLLEALIVLSVVVILLIP  409 (434)
Q Consensus       340 ~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~-~~~~~~~~~~i~~~~~~~~~  409 (434)
                      .+..+.+.+|.+|++.|+++.|+.+.++++++.++|.+.+.+.+..+... .+...+.+.+++.+..+.+.
T Consensus       326 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (406)
T PRK11551        326 QSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLLV  396 (406)
T ss_pred             HHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence            56677889999999999999999999999999999999998887644332 33344444445545544443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.95  E-value=1.8e-25  Score=219.98  Aligned_cols=325  Identities=17%  Similarity=0.202  Sum_probs=198.8

Q ss_pred             hhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHHHHHHHHHH
Q 013910           23 LYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFG  101 (434)
Q Consensus        23 ~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G  101 (434)
                      .+.||+|||+.+..+.+++.++++++++++|+.++++.|+++|++.|... ....++.|++|+++||+..++++.+..+|
T Consensus        65 ~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g  144 (412)
T TIGR02332        65 IMLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVT  144 (412)
T ss_pred             HHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999998764 44567899999999999999999999999


Q ss_pred             HHHHHHHHHHHhc------ccchHHHHHHHHHHHHHHHH-HHHhcCCChhHHhhcCChHHHHHHHHHHHHHcCCCCCCCC
Q 013910          102 SVSEAALAWIVMP------ILTWRWLLALSAIPAFVLLI-FIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGN  174 (434)
Q Consensus       102 ~~l~~~l~~~~~~------~~~Wr~~f~~~~i~~~l~~~-~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~  174 (434)
                      .++++.++..+.+      ..+||+.|.+.++++++..+ .++++||+|+..  +.-.+++++..++..+.+..+     
T Consensus       145 ~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~--~~l~~~~~~~~~~~~~~~~~~-----  217 (412)
T TIGR02332       145 MALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKA--KWLDEEDKKALKEMIDNDQLT-----  217 (412)
T ss_pred             HHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccC--CCCCHHHHHHHHHHHHhcccc-----
Confidence            9999998876642      46999999999888776544 456789999521  100111111111111100000     


Q ss_pred             ccCCCCCCCcccccCCCCccccccccccccccccccchhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 013910          175 LTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQS  254 (434)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (434)
                              .++...+.++..            ......++.++++..    ......++.....++++..+.+.+..+..
T Consensus       218 --------~~~~~~~~~~~~------------~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~p~~l~~~~  273 (412)
T TIGR02332       218 --------LEQPEGAFAHAA------------MPQRSMLREIFTPAI----MLYTLAYFCLTNTLSAINIWTPQILQSFN  273 (412)
T ss_pred             --------cccccccccccc------------ccHHHHHHHhcChHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence                    000000000000            000011222333332    22233334444455555555555443210


Q ss_pred             CCCcccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHH-HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 013910          255 KCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSM-TIMFIFVCIFLLPLVTLQSNILLTALLSGAR  333 (434)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (434)
                      .         +.+............++.++|.+++++++||++||+.. ........+.+.......+............
T Consensus       274 ~---------~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (412)
T TIGR02332       274 Q---------GSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLASATDHNLIQLLGIIMAS  344 (412)
T ss_pred             C---------CCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            0         00111112233455677888999999999999977643 3322222222221111111111111111111


Q ss_pred             HHHhhhhhhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhhhcch
Q 013910          334 MFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQ  387 (434)
Q Consensus       334 ~~~~~~~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~  387 (434)
                      +......+..+....|.+|++.|+++.|+.++.+++|++++|.+.+.+.+..|.
T Consensus       345 ~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~  398 (412)
T TIGR02332       345 MGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGS  398 (412)
T ss_pred             HHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCC
Confidence            111122234556678999999999999999999999999999999988887653

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.95  E-value=3.4e-25  Score=217.24  Aligned_cols=322  Identities=19%  Similarity=0.267  Sum_probs=201.5

Q ss_pred             hhhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHHHHHHHHH
Q 013910           22 PLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTF  100 (434)
Q Consensus        22 ~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~  100 (434)
                      .++.||+|||+.+..+.++..+++++.++++++..+++.|++.|++.+... ....++.|++|+++|++..++.+.+..+
T Consensus        68 G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  147 (405)
T TIGR00891        68 GLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAV  147 (405)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHH
Confidence            469999999999999999999999999999999999999999999988764 4566789999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccc--hHHHHHHHHHHHHHHHHHHHhcCCChhHHhhcCChHHHHHHHHHHHHHcCCCCCCCCccCC
Q 013910          101 GSVSEAALAWIVMPILT--WRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSD  178 (434)
Q Consensus       101 G~~l~~~l~~~~~~~~~--Wr~~f~~~~i~~~l~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~  178 (434)
                      |..+++.++..+.+..+  ||+.|.+.+++.++..+....+||+|++...+++.++..+..++..+.             
T Consensus       148 g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  214 (405)
T TIGR00891       148 GAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGG-------------  214 (405)
T ss_pred             HHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhcc-------------
Confidence            99999998877766555  999999988877776666777899987653322221111111111000             


Q ss_pred             CCCCCcccccCCCCccccccccccccccccccchhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCc
Q 013910          179 GTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSS  258 (434)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (434)
                           ++..++ .        .++      ....... ..++.+.................++...+.+.+....     
T Consensus       215 -----~~~~~~-~--------~~~------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  268 (405)
T TIGR00891       215 -----EHRIAN-I--------VMT------LAAAMVQ-SAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKAD-----  268 (405)
T ss_pred             -----chhhhh-h--------hhh------hhHHhhh-hhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH-----
Confidence                 000000 0        000      0000000 0011111111111111111111112211111111100     


Q ss_pred             ccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHh
Q 013910          259 SILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTL-QSNILLTALLSGARMFSM  337 (434)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  337 (434)
                           .+.+............+++++|.++.+++.||+|||+.+..+...+.+........ .+.+..........++..
T Consensus       269 -----~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (405)
T TIGR00891       269 -----LGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQ  343 (405)
T ss_pred             -----hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHc
Confidence                 01111111222344567788999999999999999998887766553333222221 222221111122222333


Q ss_pred             hhhhhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhhhcch
Q 013910          338 GTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQ  387 (434)
Q Consensus       338 ~~~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~  387 (434)
                      +..+..+.+.+|.+|++.|+++.|+.+.++++++.++|.+.+.+.|..|.
T Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~  393 (405)
T TIGR00891       344 GIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDE  393 (405)
T ss_pred             cchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            44556677889999999999999999999999999999999999887763

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.94  E-value=1.2e-24  Score=215.77  Aligned_cols=344  Identities=15%  Similarity=0.132  Sum_probs=211.1

Q ss_pred             hhhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHHHHHHHHH
Q 013910           22 PLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTF  100 (434)
Q Consensus        22 ~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~  100 (434)
                      .++.||+|||+.+.++.+++.++.++.++++|+..+++.|++.|++.|... ....++.|++|+++||+..++++.+..+
T Consensus        79 G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~  158 (434)
T PRK11663         79 GIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNV  158 (434)
T ss_pred             hHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            368999999999999999999999999999999999999999999887654 4556789999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccchHHHHHHHHHHHHHH-HHHHHhcCCChhHHhhcCChHHHHHHHHHHHHHcCCCCCCCCccCCC
Q 013910          101 GSVSEAALAWIVMPILTWRWLLALSAIPAFVL-LIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDG  179 (434)
Q Consensus       101 G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~-~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~  179 (434)
                      |..+++.+...+.+..+||+.|.+.++..++. ++..+++||+|++...+...++                         
T Consensus       159 g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~-------------------------  213 (434)
T PRK11663        159 GGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEW-------------------------  213 (434)
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccc-------------------------
Confidence            99999998888888889999999988776655 3445568998864311000000                         


Q ss_pred             CCCCcccccCCCCccccccccccccccccccch-hh-hccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 013910          180 TNDLDEEFSTSEETPLLSSARKRTTVRKSGFSS-FL-MLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCS  257 (434)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (434)
                          +++.++.+++.     +++    +.+.+. ++ ..++.+   .........+.....++++..+.+.+.....   
T Consensus       214 ----~~~~~~~~~~~-----~~~----~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~---  274 (434)
T PRK11663        214 ----RHDALELAQQQ-----EGA----GLSRKEILTKYVLLNP---YIWLLSFSYVLVYVVRAAINDWGNLYMSETL---  274 (434)
T ss_pred             ----cccccccchhc-----ccc----CCChhhhHHHHHhcCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---
Confidence                00000000000     000    000000 00 011111   1111222222233333444444433321110   


Q ss_pred             cccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhh--chh-HHHHHHHHHH--HHHHHHHHhhhhhHHHHHHHHHH
Q 013910          258 SSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRV--GRK-LSMTIMFIFV--CIFLLPLVTLQSNILLTALLSGA  332 (434)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~--gRR-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  332 (434)
                             +.+............+++++|.+++++++||+  ++| ..........  ....+......+........+..
T Consensus       275 -------g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (434)
T PRK11663        275 -------GVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVMQAACFFTI  347 (434)
T ss_pred             -------CCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHH
Confidence                   11111111223344567889999999999998  333 3222211111  11111111111111111111111


Q ss_pred             HHHHhhhhhhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhccccc
Q 013910          333 RMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFET  412 (434)
Q Consensus       333 ~~~~~~~~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~et  412 (434)
                      .++..++........+|.+|++.|+++.|+.++++++|+.++|.+.+.+.|..|....+++.+++++++++..+...++.
T Consensus       348 g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~  427 (434)
T PRK11663        348 GFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLNAQ  427 (434)
T ss_pred             HHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            11222333344566789999999999999999999999999999999998877766777788888888877777666666


Q ss_pred             CCcc
Q 013910          413 KGKE  416 (434)
Q Consensus       413 ~~~~  416 (434)
                      ++++
T Consensus       428 ~~~~  431 (434)
T PRK11663        428 APRE  431 (434)
T ss_pred             chhc
Confidence            6554

>TIGR00895 2A0115 benzoate transport

Probab=99.94  E-value=2.4e-24  Score=210.50  Aligned_cols=324  Identities=27%  Similarity=0.355  Sum_probs=209.1

Q ss_pred             hhhhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHHHHHHHH
Q 013910           21 EPLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWT   99 (434)
Q Consensus        21 ~~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~   99 (434)
                      .+.+.||+|||+.+..+.++..++.++..+++++..+++.|++.|++.+... ....++.|+.|+++|++..++.+.+..
T Consensus        72 ~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  151 (398)
T TIGR00895        72 FGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYP  151 (398)
T ss_pred             hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHH
Confidence            3468999999999999999999999999999999999999999999988754 556788999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcccchHHHHHHHHHHHHH-HHHHHHhcCCChhHHhhcCChHHHHHHHHHHHHHcCCCCCCCCccCC
Q 013910          100 FGSVSEAALAWIVMPILTWRWLLALSAIPAFV-LLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSD  178 (434)
Q Consensus       100 ~G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l-~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~  178 (434)
                      +|..+++.++..+.+..+||+.|.+.++..++ ..+...++||+|++...+ +.+++.+..++....+..+.        
T Consensus       152 ~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--------  222 (398)
T TIGR00895       152 IGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEA--------  222 (398)
T ss_pred             HHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhccccc--------
Confidence            99999999988888888999999988654444 445566789999887655 44555555554432221100        


Q ss_pred             CCCCCcccccCCCCccccccccccccccccccchhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCc
Q 013910          179 GTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSS  258 (434)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (434)
                       +.+.++     ++.        +....+   .....+++++..+.....+...+.....++....+.+.+....     
T Consensus       223 -~~~~~~-----~~~--------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  280 (398)
T TIGR00895       223 -QSALPE-----QKA--------TQGTKR---SVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVEL-----  280 (398)
T ss_pred             -cccccc-----ccc--------ccchhh---HHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----
Confidence             000000     000        000000   0122233344444444444444444444444444444322111     


Q ss_pred             ccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhh
Q 013910          259 SILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMG  338 (434)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (434)
                            +.+............+..+++.+++++++||+|||..............+......+............++..+
T Consensus       281 ------g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  354 (398)
T TIGR00895       281 ------GFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNG  354 (398)
T ss_pred             ------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Confidence                  11111112233455677889999999999999999544433322222222222122222222222222233334


Q ss_pred             hhhhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHH
Q 013910          339 TFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGL  381 (434)
Q Consensus       339 ~~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l  381 (434)
                      ..+..+.+.+|.+|++.|+++.|+.++++++++.++|.+.+.+
T Consensus       355 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       355 GQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            5567788999999999999999999999999999999988754

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.94  E-value=1.1e-24  Score=212.32  Aligned_cols=338  Identities=16%  Similarity=0.187  Sum_probs=204.5

Q ss_pred             hhhhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHHHHHHHH
Q 013910           21 EPLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWT   99 (434)
Q Consensus        21 ~~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~   99 (434)
                      .+.+.||+|||+.+..+.++..++.++.++++|+..++++|++.|++.+... ....++.|++|+++|++..++.+....
T Consensus        49 ~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  128 (399)
T TIGR00893        49 GGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQG  128 (399)
T ss_pred             HHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhch
Confidence            3468999999999999999999999999999999999999999999987654 456788999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH-HHhcCCChhHHhhcCChHHHHHHHHHHHHHcCCCCCCCCccCC
Q 013910          100 FGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIF-IVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSD  178 (434)
Q Consensus       100 ~G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~~-~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~  178 (434)
                      +|.++++.++..+.+..+||+.|.+.++..++..+. .+..||+|+-   +.+.++.++....  +..            
T Consensus       129 ~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~--~~~------------  191 (399)
T TIGR00893       129 LGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQK---AKWLTEEEKYIVV--GGL------------  191 (399)
T ss_pred             HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCCc---cccCCHHHHhhcc--hhh------------
Confidence            999999999888888889999999988877766444 4456777642   1111111110000  000            


Q ss_pred             CCCCCcccccCCCCccccccccccccccccccchhhhccC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 013910          179 GTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFS-PRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCS  257 (434)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (434)
                           +.+.++.++.             +......+..++ ++.+    ......+.....++....+.+.+.....   
T Consensus       192 -----~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  246 (399)
T TIGR00893       192 -----LAEQQGKGPS-------------TPKKYQIKELLKDRRVW----GLALGQFLVNIGLGFFLTWFPTYLVQER---  246 (399)
T ss_pred             -----cccccccccc-------------CCCccchHHHhcCHHHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHh---
Confidence                 0000000000             000011122222 2222    1122222222222222222222211100   


Q ss_pred             cccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhH--HHHHH--HHHHHHHHH--HHHhh-hhhHHHHHHHH
Q 013910          258 SSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKL--SMTIM--FIFVCIFLL--PLVTL-QSNILLTALLS  330 (434)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~--~~~~~--~~~~~~~~~--~~~~~-~~~~~~~~~~~  330 (434)
                             +.+............+.++++.+++++++||++||+  .....  .....+...  ..... .+.........
T Consensus       247 -------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (399)
T TIGR00893       247 -------GLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALV  319 (399)
T ss_pred             -------cccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence                   011111122233445677889999999999999996  11111  111111111  11111 11111111111


Q ss_pred             HHHHHHhhhhhhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhhhcc-hhhHHHHHHHHHHHHHHHHHh
Q 013910          331 GARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH-QTAAILLLEALIVLSVVVILL  407 (434)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g-~~~~~~~~~~~~~i~~~~~~~  407 (434)
                      ....+..+..+..+.+.+|.+|++.|+++.|+.+.+.++++.++|.+.+.+.+..+ ....+.+.+++++++.+..++
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  397 (399)
T TIGR00893       320 ALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYLL  397 (399)
T ss_pred             HHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHHH
Confidence            11122233467788899999999999999999999999999999999999888766 445566666666666555543

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.94  E-value=1.2e-25  Score=209.38  Aligned_cols=340  Identities=18%  Similarity=0.283  Sum_probs=230.9

Q ss_pred             hhhhhhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCc-hhhhhhhhhccCCCcchhHHHHHHHH
Q 013910           19 LLEPLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTF   97 (434)
Q Consensus        19 ~~~~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~   97 (434)
                      |+-..++||.+.|..+-+++++..+.+++.+++++...+.++-+++|...|.+ +.....++-|+|+++||++.++.+.+
T Consensus        82 f~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~s  161 (448)
T COG2271          82 FVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTS  161 (448)
T ss_pred             HHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhh
Confidence            55678999999999999999999999999999999999999999999998886 45666788999999999999999999


Q ss_pred             HHHHHHHHHHHH--HHHhcccchHHHHHHHHHHHHHHHH-HHHhcCCChhHHhhcCChHHHHHHHHHHHHHcCCCCCCCC
Q 013910           98 WTFGSVSEAALA--WIVMPILTWRWLLALSAIPAFVLLI-FIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGN  174 (434)
Q Consensus        98 ~~~G~~l~~~l~--~~~~~~~~Wr~~f~~~~i~~~l~~~-~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~  174 (434)
                      +++|..+.+++.  ..+..+.+||..|++.++.+++..+ ..+.+.|+|+=   .|-..     ++   +..+       
T Consensus       162 hNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs---~GLP~-----ie---~~~~-------  223 (448)
T COG2271         162 HNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQS---EGLPP-----IE---EYRG-------  223 (448)
T ss_pred             hhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccc---cCCCC-----HH---Hhhc-------
Confidence            999999999888  6667777999999999998888755 45668898872   11110     00   0000       


Q ss_pred             ccCCCCCCCcccccCCCCccccccccccccccccccchhhhccCcchHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhc
Q 013910          175 LTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVY---YGIVLLASELSG  251 (434)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~  251 (434)
                            +..+.+ +++++.+        ....++  .-.+..++.+      .+|.+.+.+.+.|   |++..|.|.+..
T Consensus       224 ------d~~e~~-~~~~~~~--------~ls~~~--i~~~YVL~Nk------~iW~la~a~vfvYivR~gi~dW~p~YL~  280 (448)
T COG2271         224 ------DPLEIY-EEEKENE--------GLTAWQ--IFVKYVLKNK------LIWLLALANVFVYVVRYGINDWGPLYLS  280 (448)
T ss_pred             ------Cchhhh-hhhccCC--------CccHHH--HHHHHHHcCh------HHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence                  000000 0000000        000000  0111122222      2455555555544   788878776654


Q ss_pred             ccCCCCcccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhh--chhHHHHHHHHHH-HHHHHHHHhhhh--hHHHH
Q 013910          252 SQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRV--GRKLSMTIMFIFV-CIFLLPLVTLQS--NILLT  326 (434)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~--gRR~~~~~~~~~~-~~~~~~~~~~~~--~~~~~  326 (434)
                      +...          .+..+......+.-+++++|++++|+++||+  |||....+.+.+. .+++.......+  .....
T Consensus       281 e~k~----------~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~  350 (448)
T COG2271         281 EVKG----------FSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDA  350 (448)
T ss_pred             HhcC----------CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHH
Confidence            3221          1112223334455688999999999999997  7887665443333 333333333221  23333


Q ss_pred             HHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHhHHHHhhhH-hHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHH
Q 013910          327 ALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRI-GGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVI  405 (434)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~a~gi~~~~~~i-g~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~  405 (434)
                      .+++...++..|+--+......|..|.+..++|.|+...++++ |+..+....+++.|..|....++++.+.++++.+..
T Consensus       351 ~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll  430 (448)
T COG2271         351 ILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLL  430 (448)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHH
Confidence            3334444556677777788899999999999999999999999 888888888888787676677777666666666555


Q ss_pred             Hhcc
Q 013910          406 LLIP  409 (434)
Q Consensus       406 ~~~~  409 (434)
                      +...
T Consensus       431 ~~~~  434 (448)
T COG2271         431 LPVW  434 (448)
T ss_pred             HHHH
Confidence            5443

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.94  E-value=1e-24  Score=218.21  Aligned_cols=342  Identities=14%  Similarity=0.136  Sum_probs=202.9

Q ss_pred             hhhHhhhcchHHHHHHHHHHHHHHHHHhh-----cccHHHHHHHHHHHHhcCCCc-hhhhhhhhhccCCCcchhHHHHHH
Q 013910           22 PLYFIFAFSRMSILGGALVTFVAGLLSAF-----SPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFS   95 (434)
Q Consensus        22 ~~~~~~~GRr~~l~~~~~~~~i~~~~~~~-----~~~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~   95 (434)
                      ..+.||+|||+.+..+.+++++++++.++     ++|+..+++.|+++|++.|.. +....++.|++|+++||++.++++
T Consensus        85 G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~  164 (467)
T PRK09556         85 GYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWN  164 (467)
T ss_pred             hhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeee
Confidence            36899999999999888888877766554     689999999999999988775 345568899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcc---cchHHHHHHHHHHHHHHHHH-HHhcCCChhHHhhcCChHHHHHHHHHHHHHcCCCCC
Q 013910           96 TFWTFGSVSEAALAWIVMPI---LTWRWLLALSAIPAFVLLIF-IVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLP  171 (434)
Q Consensus        96 ~~~~~G~~l~~~l~~~~~~~---~~Wr~~f~~~~i~~~l~~~~-~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~  171 (434)
                      .+..+|.++++.++......   .+||..|.+.++.+++..+. +++.+|+|+..   +..++ ++..      ++    
T Consensus       165 ~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~---~~~~~-~~~~------~~----  230 (467)
T PRK09556        165 ISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEEL---GWGKA-EEIF------GE----  230 (467)
T ss_pred             cccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhc---CCCCh-hhcc------cC----
Confidence            99999999998887554432   26999999888777766444 44567777521   11000 0000      00    


Q ss_pred             CCCccCCCCCCCcccccCCCCccccccccccccccccccchh-h-hccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013910          172 SGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSF-L-MLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASEL  249 (434)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  249 (434)
                       .         .+++.++.+++        +    ......+ . .+.++..    .......+.....+++...|.+.+
T Consensus       231 -~---------~~~~~~~~~~~--------~----~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~p~y  284 (467)
T PRK09556        231 -P---------ISEEDKETEST--------D----MTKWQIFVEYVLKNPVI----WLLCFANIFLYIVRIGIDNWSPVY  284 (467)
T ss_pred             -c---------cchhhhccccc--------c----CcHHHHHHHHHHcChHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence             0         00000000000        0    0000000 0 1111222    122233333344445555555543


Q ss_pred             hcccCCCCcccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHH--HHHHhhhhhHHHHH
Q 013910          250 SGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFL--LPLVTLQSNILLTA  327 (434)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  327 (434)
                      ..+.          .+.+............++.++|.+++|+++||+|||+..........+..  +......+......
T Consensus       285 l~~~----------~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (467)
T PRK09556        285 AFQE----------LGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLA  354 (467)
T ss_pred             HHHc----------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            3211          01111112223344556788999999999999999887655433322221  11111112211111


Q ss_pred             HHHHHHHHHhhhhhhhhhhcccccCCCchhhHHhHHHHhhhH-hHhhHHHHHHHHhh------------hcchhhHHHHH
Q 013910          328 LLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRI-GGMVCPLVAVGLVT------------SCHQTAAILLL  394 (434)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~a~gi~~~~~~i-g~~~~p~~~~~l~~------------~~g~~~~~~~~  394 (434)
                      ..+...++..++....+....|.+|++.|+++.|+.+.++++ |++++|.+.+.+.|            ..+....+.++
T Consensus       355 ~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~  434 (467)
T PRK09556        355 SLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAAL  434 (467)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHH
Confidence            111111122233333345667999999999999999999997 66899999999988            34445566666


Q ss_pred             HHHHHHHHHHHHhcc-cccC
Q 013910          395 EALIVLSVVVILLIP-FETK  413 (434)
Q Consensus       395 ~~~~~i~~~~~~~~~-~et~  413 (434)
                      +++++++.+..+++. .|+|
T Consensus       435 ~~~~~~~~~~~~~~~~~~~~  454 (467)
T PRK09556        435 DIAAIGCICLMAIVAVMEER  454 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            677777666655543 3444

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.93  E-value=9.2e-24  Score=208.43  Aligned_cols=339  Identities=16%  Similarity=0.059  Sum_probs=215.0

Q ss_pred             hhhhHhhhcchHHHHHHHHHHHHHHHHHh-----hcccHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHHH
Q 013910           21 EPLYFIFAFSRMSILGGALVTFVAGLLSA-----FSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVF   94 (434)
Q Consensus        21 ~~~~~~~~GRr~~l~~~~~~~~i~~~~~~-----~~~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~   94 (434)
                      .+.+.||+|||+.+..+..+..++.+..+     ..+++..+++.|++.|++.+... ....++.|+.|+++|++..++.
T Consensus        72 ~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (417)
T PRK10489         72 GGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAIT  151 (417)
T ss_pred             hHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHH
Confidence            34689999999999888777766554433     25788999999999999866543 3455678999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcCCChhHHhhcCChHHHHHHHHHHHHHcCCCCCCCC
Q 013910           95 STFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGN  174 (434)
Q Consensus        95 ~~~~~~G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~  174 (434)
                      +....+|..+++.++..+.+..+||+.|.+.++..++..+..+.+||+|+..  +++                       
T Consensus       152 ~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~-----------------------  206 (417)
T PRK10489        152 MLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRLPALPPPP--QPR-----------------------  206 (417)
T ss_pred             HHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCCCCCC--ccc-----------------------
Confidence            9999999999999988877777999999988877776666666777754310  000                       


Q ss_pred             ccCCCCCCCcccccCCCCccccccccccccccccccchhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 013910          175 LTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQS  254 (434)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (434)
                               ++     +.++              ..+.++..++.+..+...+......   . ..+...+.+.+..+. 
T Consensus       207 ---------~~-----~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~p~~~~~~-  253 (417)
T PRK10489        207 ---------EH-----PLRS--------------LLAGFRFLLASPVVGGIALLGGLLT---M-ASAVRVLYPALADEV-  253 (417)
T ss_pred             ---------cc-----chHH--------------HHHHHHHHHcChHHHHHHHHHHHHH---H-HHhHHHhhHHHHHhc-
Confidence                     00     0000              0001112222222222222111111   1 112222222222110 


Q ss_pred             CCCcccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 013910          255 KCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARM  334 (434)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (434)
                               .+.+............++.++|.++.+++.||.++|+.+..+..+.++..+.+....+............+
T Consensus       254 ---------~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  324 (417)
T PRK10489        254 ---------WQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGY  324 (417)
T ss_pred             ---------cCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHH
Confidence                     00111111112234456678888999999999777777666655554444333322222211111111111


Q ss_pred             HHhhhhhhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccCC
Q 013910          335 FSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKG  414 (434)
Q Consensus       335 ~~~~~~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~et~~  414 (434)
                      ......+..+.+..|..|++.|+++.|+.+....+|+.++|.+.+.+.+..+....+...+++..+..++.+...||+|+
T Consensus       325 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (417)
T PRK10489        325 LSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELRR  404 (417)
T ss_pred             HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcccccc
Confidence            11112244567888999999999999999999999999999999999887776667777777777777777777789999


Q ss_pred             cccccccccccC
Q 013910          415 KELVNTIDGVSN  426 (434)
Q Consensus       415 ~~~~e~~~~~~~  426 (434)
                      ++.+|+++|.+.
T Consensus       405 ~~~~~~~~~~~~  416 (417)
T PRK10489        405 FRQTPPEVDASD  416 (417)
T ss_pred             cccccccCCCCC
Confidence            999999888764

>PRK03545 putative arabinose transporter; Provisional

Probab=99.93  E-value=7e-23  Score=200.34  Aligned_cols=312  Identities=16%  Similarity=0.125  Sum_probs=197.7

Q ss_pred             hhhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHHHHHHHHH
Q 013910           22 PLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTF  100 (434)
Q Consensus        22 ~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~  100 (434)
                      +.+.||+|||+.+..+..+..++++.+++++|+..++++|+++|++.+... ....++.|++|+++|+++.++.+.+..+
T Consensus        65 g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~  144 (390)
T PRK03545         65 MLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTAL  144 (390)
T ss_pred             HHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHH
Confidence            368999999999999999999999999999999999999999999887653 4556788999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH-HHhcCCChhHHhhcCChHHHHHHHHHHHHHcCCCCCCCCccCCC
Q 013910          101 GSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIF-IVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDG  179 (434)
Q Consensus       101 G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~~-~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~  179 (434)
                      |..+++.++..+.+..+||+.|++.++.+++..+. ...+||.|+    +.+  +..                       
T Consensus       145 g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~----~~~--~~~-----------------------  195 (390)
T PRK03545        145 AMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPS----EHS--GSL-----------------------  195 (390)
T ss_pred             HHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCC----CCc--chH-----------------------
Confidence            99999999888878889999999998877665443 444666542    000  000                       


Q ss_pred             CCCCcccccCCCCccccccccccccccccccchhhhccC-cchHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhcccCCCC
Q 013910          180 TNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFS-PRFFKTTILLWVLYFGNSFVYYGIVLL-ASELSGSQSKCS  257 (434)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  257 (434)
                                                     ++....++ ++.+.........    ...+++...+ .+.+....    
T Consensus       196 -------------------------------~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~----  236 (390)
T PRK03545        196 -------------------------------KSLPLLFRRPALVSLYLLTVVV----VTAHFTAYSYIEPFVQQVA----  236 (390)
T ss_pred             -------------------------------HHHHHHHhCcHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhc----
Confidence                                           00011111 2222111111111    1111111111 11111100    


Q ss_pred             cccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHh
Q 013910          258 SSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSM  337 (434)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (434)
                             +.+............+.+++|.++.+++.||.+||.......+.............+............+...
T Consensus       237 -------g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~  309 (390)
T PRK03545        237 -------GLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLIAIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIM  309 (390)
T ss_pred             -------CCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHh
Confidence                   0111111222334456788999999999999998875444333222222221222222221111111111112


Q ss_pred             hhhhhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcc
Q 013910          338 GTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIP  409 (434)
Q Consensus       338 ~~~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~  409 (434)
                      +..........|..| +.|+++.|+.+...++|..++|.+.+.+.+..+....+...+.+.+++.+..++..
T Consensus       310 ~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  380 (390)
T PRK03545        310 CIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF  380 (390)
T ss_pred             cchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence            222334455567777 57899999999999999999999999999887777777777777777776666554

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.93  E-value=3.2e-23  Score=202.18  Aligned_cols=302  Identities=19%  Similarity=0.241  Sum_probs=189.8

Q ss_pred             hhhhhHhhhcchHHHHHHHHHHHHHHHHHhhcccHH--------HHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhH
Q 013910           20 LEPLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYI--------SLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKW   90 (434)
Q Consensus        20 ~~~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~--------~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~   90 (434)
                      +..++.||+|||+.+..+.++..++.++.++++++.        .++++|+++|++.+... ....++.|+.|+++|++.
T Consensus        54 ~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~  133 (394)
T TIGR00883        54 VFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFY  133 (394)
T ss_pred             HhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHH
Confidence            345789999999999999999999999999999875        48999999999988754 456688999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHh--------cccchHHHHHHHHHHHHHHHHHHHhcCCChhHHhhcCChHHHHHHHHHH
Q 013910           91 MVVFSTFWTFGSVSEAALAWIVM--------PILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKI  162 (434)
Q Consensus        91 ~~~~~~~~~~G~~l~~~l~~~~~--------~~~~Wr~~f~~~~i~~~l~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~  162 (434)
                      .+..+.+..+|.++++.++..+.        +..+||+.|.+.++..++.......+||+|++...+++.          
T Consensus       134 ~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  203 (394)
T TIGR00883       134 GSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEKH----------  203 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhcc----------
Confidence            99999999999999988765442        356899999988877776666666788887642110000          


Q ss_pred             HHHcCCCCCCCCccCCCCCCCcccccCCCCccccccccccccccccccchhhhccCcchHHHHHHHHHHHHHHHHHHHHH
Q 013910          163 AQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGI  242 (434)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  242 (434)
                                           ++     ++.                  +....++.+ ++.........+.....++..
T Consensus       204 ---------------------~~-----~~~------------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  238 (394)
T TIGR00883       204 ---------------------KK-----KRG------------------PIRETLTKH-RKPFLLGLGLVIATTTTFYLI  238 (394)
T ss_pred             ---------------------cc-----ccC------------------CHHHHHHhc-hHHHHHHHHHHHHHHHHHHHH
Confidence                                 00     000                  000111111 111222222222233333333


Q ss_pred             HHHHHhhhcccCCCCcccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHH-HH-HHhh-
Q 013910          243 VLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFL-LP-LVTL-  319 (434)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~-~~-~~~~-  319 (434)
                      ..+.+.+....          .+.+............+.+.++..++++++||+|||+.+..+..+..+.. .. .... 
T Consensus       239 ~~~~~~~~~~~----------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~  308 (394)
T TIGR00883       239 TTYLPTYLTQT----------LGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLD  308 (394)
T ss_pred             HHHHHHHHHHh----------cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            33333222110          00111112223344556778888999999999999997765444333222 11 1111 


Q ss_pred             hhh-HHHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHhHHHHhh-hHhHhhHHHHHHHHhhhcc
Q 013910          320 QSN-ILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVG-RIGGMVCPLVAVGLVTSCH  386 (434)
Q Consensus       320 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~a~gi~~~~~-~ig~~~~p~~~~~l~~~~g  386 (434)
                      ..+ +..........++.....+..+.+.+|.+|++.|+++.|+.+..+ .+++.++|.+.+.+.+..+
T Consensus       309 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g  377 (394)
T TIGR00883       309 SGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTG  377 (394)
T ss_pred             CCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcC
Confidence            111 221111111112222345667888999999999999999976665 4678899999998888766

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.93  E-value=3.1e-23  Score=209.38  Aligned_cols=365  Identities=18%  Similarity=0.240  Sum_probs=209.1

Q ss_pred             hhhhhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHHHHHHH
Q 013910           20 LEPLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFW   98 (434)
Q Consensus        20 ~~~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~   98 (434)
                      +..++.||+|||+.+..+.++..++.++.++++|+..+++.|++.|++.+... ....++.|.+|+++|++..++...+.
T Consensus        74 ~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  153 (496)
T PRK03893         74 LLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGF  153 (496)
T ss_pred             HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence            44579999999999999999999999999999999999999999999987754 45667889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcCCChhHHhhcCChHHHHHHHHHHHHHcCCCCCCCCccCC
Q 013910           99 TFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSD  178 (434)
Q Consensus        99 ~~G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~  178 (434)
                      .+|..+++.+...+.+..+||+.|.+..++.++.+.....+||++++...+++.++..+..+...+.+.           
T Consensus       154 ~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  222 (496)
T PRK03893        154 SIGAVVAAQVYSLVVPVWGWRALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEH-----------  222 (496)
T ss_pred             HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchh-----------
Confidence            999999999988888889999999987776666555566789988764322211111111100000000           


Q ss_pred             CCCCCcccccCCCCccccccccccccccccccc-------------hhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 013910          179 GTNDLDEEFSTSEETPLLSSARKRTTVRKSGFS-------------SFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLL  245 (434)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  245 (434)
                         +....................  ..+..+.             .+.....++.+..........+......++...+
T Consensus       223 ---~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (496)
T PRK03893        223 ---RIINILLTLAAAAALWFCFAG--NLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQAL  297 (496)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHh--hhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHH
Confidence               000000000000000000000  0000000             0000000000000001111111111111112222


Q ss_pred             HHhhhcccCCCCcccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhh-hhh-H
Q 013910          246 ASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTL-QSN-I  323 (434)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~-~~~-~  323 (434)
                      .+.+....          .+.+............++.++|.+++++++||+|||+.+..+..+..+..+.+... ... +
T Consensus       298 lp~~l~~~----------~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (496)
T PRK03893        298 LPTYLKTD----------LGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVW  367 (496)
T ss_pred             HHHHHHhh----------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHH
Confidence            22222100          01111122223344567788899999999999999998877665555443322221 111 1


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHH-HHHH
Q 013910          324 LLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALI-VLSV  402 (434)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~-~i~~  402 (434)
                      ......+....+..+.......+.+|.+|++.|++++|+.++.+.+|+.++|.+.+.+.+..+....+...+.++ +++.
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~~~~  447 (496)
T PRK03893        368 VLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTFVVI  447 (496)
T ss_pred             HHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH
Confidence            111111111122223344566778899999999999999999999999999999998888776554444444333 3333


Q ss_pred             HHHHhccc
Q 013910          403 VVILLIPF  410 (434)
Q Consensus       403 ~~~~~~~~  410 (434)
                      +...+..|
T Consensus       448 ~~~~~~~~  455 (496)
T PRK03893        448 LLIGLDMP  455 (496)
T ss_pred             HHHHhcCc
Confidence            33434333

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.93  E-value=7.1e-23  Score=200.35  Aligned_cols=322  Identities=16%  Similarity=0.092  Sum_probs=206.8

Q ss_pred             hhhhhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHHHHHHH
Q 013910           20 LEPLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFW   98 (434)
Q Consensus        20 ~~~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~   98 (434)
                      ..+.+.||+|||+++..+..++.++.+++++++|+..++++|+++|+|.+... ....++.|+.| ++|+++.+.+..+.
T Consensus        63 ~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~  141 (393)
T PRK09705         63 AGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAAL  141 (393)
T ss_pred             hhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHH
Confidence            34579999999999999999999999999999999999999999999988754 33456778886 88999999999999


Q ss_pred             HHHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHHHHHHHhcC-CChhHHhhcCChHHHHHHHHHHHHHcCCCCCCCCcc
Q 013910           99 TFGSVSEAALAWIVMPIL-TWRWLLALSAIPAFVLLIFIVFMP-ESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLT  176 (434)
Q Consensus        99 ~~G~~l~~~l~~~~~~~~-~Wr~~f~~~~i~~~l~~~~~~~lp-ESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~  176 (434)
                      .+|..+++.++..+.++. +||+.+.+.+++.++..+.++... +.|+                            +   
T Consensus       142 ~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~---  190 (393)
T PRK09705        142 MGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVALFAWWWQSAREVA----------------------------S---  190 (393)
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCCc----------------------------c---
Confidence            999999998887766654 899988776666554433322211 1000                            0   


Q ss_pred             CCCCCCCcccccCCCCccccccccccccccccccchhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q 013910          177 SDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKC  256 (434)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (434)
                             ++    .++..                 ....+.+++.+    .....++.....+++...+.+.+..+.   
T Consensus       191 -------~~----~~~~~-----------------~~~~l~~~~~~----~l~~~~~~~~~~~~~~~~~lp~~l~~~---  235 (393)
T PRK09705        191 -------SH----KTTTT-----------------PVRVVFTPRAW----TLGVYFGLINGGYASLIAWLPAFYIEI---  235 (393)
T ss_pred             -------cc----CCCcC-----------------CcccccCHhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHc---
Confidence                   00    00000                 00011112211    111222223334444444444333211   


Q ss_pred             CcccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHH
Q 013910          257 SSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT-LQSNILLTALLSGARMF  335 (434)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  335 (434)
                              +.+.........+..+.+++|.++.+++.||.+||+....+..+..+....+.. ..+......  ....+.
T Consensus       236 --------g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~l~g~g  305 (393)
T PRK09705        236 --------GASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVLWA--MVCGLG  305 (393)
T ss_pred             --------CCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHHHH--HHHHHh
Confidence                    011111112234556778899999999999999998887776555444333221 111111111  111111


Q ss_pred             Hhhhhhhhhhhccccc-CCCchhhHHhHHHHhhhHhHhhHHHHHHHHhhhcch-hhHHHHHHHHHHHHHHHHHhcccccC
Q 013910          336 SMGTFIIANIFAPEIY-PTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQ-TAAILLLEALIVLSVVVILLIPFETK  413 (434)
Q Consensus       336 ~~~~~~~~~~~~~El~-P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~-~~~~~~~~~~~~i~~~~~~~~~~et~  413 (434)
                      ..+.++.......+.+ |++.|+++.|+.+.++++++.++|.+.+.+.|..|. ...+.+.++++++..+..+.++|||+
T Consensus       306 ~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (393)
T PRK09705        306 LGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARF  385 (393)
T ss_pred             ccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccc
Confidence            2223344444545666 467899999999999999999999999999998764 34556666777777788888999999


Q ss_pred             Ccccc
Q 013910          414 GKELV  418 (434)
Q Consensus       414 ~~~~~  418 (434)
                      .|...
T Consensus       386 ~~~~~  390 (393)
T PRK09705        386 PQLWV  390 (393)
T ss_pred             cchhc
Confidence            87654

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.92  E-value=2.8e-22  Score=196.72  Aligned_cols=320  Identities=15%  Similarity=0.051  Sum_probs=198.0

Q ss_pred             hhhhhHhhhcchHHHHHHHHHHHHHHHHHhhc--------ccHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhH
Q 013910           20 LEPLYFIFAFSRMSILGGALVTFVAGLLSAFS--------PNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKW   90 (434)
Q Consensus        20 ~~~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~--------~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~   90 (434)
                      +.+.+.||+|||+++..+.+++.++++...++        .++..+++.|+++|++.+... ....++.|+.|+++|+++
T Consensus        70 ~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~  149 (399)
T PRK05122         70 HAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRV  149 (399)
T ss_pred             hhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccc
Confidence            34479999999999999999888776655443        256789999999999988754 445678899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcCCChhHHhhcCChHHHHHHHHHHHHHcCCCC
Q 013910           91 MVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSL  170 (434)
Q Consensus        91 ~~~~~~~~~~G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~  170 (434)
                      .++.+.+..+|.++++.++..+.+..+||+.+.+..+..++........||++.    +                     
T Consensus       150 ~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---------------------  204 (399)
T PRK05122        150 ISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLLARPRPAVPP----V---------------------  204 (399)
T ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCCCC----C---------------------
Confidence            999999999999999999888888889999988776655443333322232211    0                     


Q ss_pred             CCCCccCCCCCCCcccccCCCCccccccccccccccccccchhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013910          171 PSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELS  250 (434)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  250 (434)
                                   ++     ++.                  +....++ +.++.....    ....+.++....+.+.+.
T Consensus       205 -------------~~-----~~~------------------~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~  243 (399)
T PRK05122        205 -------------KG-----ERL------------------PFRRVLG-RVWPYGMGL----ALASIGFGTIATFITLYY  243 (399)
T ss_pred             -------------Cc-----cch------------------hHHHHHH-HHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence                         00     000                  0000000 001110000    011111222211211111


Q ss_pred             cccCCCCcccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 013910          251 GSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLS  330 (434)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (434)
                      .+.+           .....  .......++.+++.++.+++.||.+||+.+..+..+..+....+....+.+.......
T Consensus       244 ~~~~-----------~~~~~--~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (399)
T PRK05122        244 AARG-----------WDGAA--LALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAA  310 (399)
T ss_pred             HHcc-----------cccch--HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            1100           00011  1122334566788899999999999999887766655554443333222222211111


Q ss_pred             HHHHHHhhhhhhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhccc
Q 013910          331 GARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPF  410 (434)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  410 (434)
                      ...++....++.......|.+|++.|+++.|+.+....+|+.++|.+.+.+.+..|....+.+.+++++++.+..+++ +
T Consensus       311 l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~-~  389 (399)
T PRK05122        311 LTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLL-Y  389 (399)
T ss_pred             HHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHh-c
Confidence            111112223344445667899999999999999999999998888888888887776667777777777776666665 4


Q ss_pred             ccCCccccc
Q 013910          411 ETKGKELVN  419 (434)
Q Consensus       411 et~~~~~~e  419 (434)
                      +.++|+.+|
T Consensus       390 ~~~~~~~~~  398 (399)
T PRK05122        390 RRAPRAVPE  398 (399)
T ss_pred             ccccccCCC
Confidence            666666655

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.92  E-value=2.3e-22  Score=200.44  Aligned_cols=344  Identities=16%  Similarity=0.197  Sum_probs=195.2

Q ss_pred             hhhHhhhcchHHHHHHHHHHHHHHHHHhhc----ccHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHHHHH
Q 013910           22 PLYFIFAFSRMSILGGALVTFVAGLLSAFS----PNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFST   96 (434)
Q Consensus        22 ~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~----~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~   96 (434)
                      +.+.||+|||+.+..+.++++++.++.+++    .++..+++.|++.|++.|... .....+.|++|+++||+..++++.
T Consensus        84 G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~  163 (452)
T PRK11273         84 GSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNC  163 (452)
T ss_pred             hhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHH
Confidence            468999999999999999999988888765    378889999999999887654 344567899999999999999999


Q ss_pred             HHHHHHH-HHHHHHHHHhcccchHHHHHHHHHHHHHH-HHHHHhcCCChhHHhhcCChHHHHHHHHHHHHHcCCCCCCCC
Q 013910           97 FWTFGSV-SEAALAWIVMPILTWRWLLALSAIPAFVL-LIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGN  174 (434)
Q Consensus        97 ~~~~G~~-l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~-~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~  174 (434)
                      +..+|.. .++++...+....+||+.|++.+++.++. ++..+++||+|+...   ..++++.  +   +    +.+   
T Consensus       164 ~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~--~---~----~~~---  228 (452)
T PRK11273        164 AHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTPQSCG---LPPIEEY--K---N----DYP---  228 (452)
T ss_pred             HHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcC---CCChhhh--h---h----ccc---
Confidence            9988864 44443333333459999999988776665 445667899886421   1111000  0   0    000   


Q ss_pred             ccCCCCCCCcccccCCCCccccccccccccccccccchhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 013910          175 LTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQS  254 (434)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (434)
                            .+.++  ++.++         .  ..++.+  ....++.+.   ........+.....+++...+.|.+..+..
T Consensus       229 ------~~~~~--~~~~~---------~--~~~~~~--~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~  284 (452)
T PRK11273        229 ------DDYNE--KHEQE---------L--TAKQIF--MQYVLPNKL---LWYIAIANVFVYLLRYGILDWSPTYLKEVK  284 (452)
T ss_pred             ------ccccc--ccCCC---------c--cHHHHH--HHHHHcChH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                  00000  00000         0  000000  011111111   111112222222333444444444332110


Q ss_pred             CCCcccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhh--chhHHHH-HHHHHHHHHHHHHHhh-h-hhHHHHHHH
Q 013910          255 KCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRV--GRKLSMT-IMFIFVCIFLLPLVTL-Q-SNILLTALL  329 (434)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~--gRR~~~~-~~~~~~~~~~~~~~~~-~-~~~~~~~~~  329 (434)
                                +.+.........+..+..+++.+++|+++||+  +||.... ....+..+....+... . +........
T Consensus       285 ----------g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  354 (452)
T PRK11273        285 ----------HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACM  354 (452)
T ss_pred             ----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHH
Confidence                      01111122223345567788999999999999  5554332 2222222221111111 1 111111111


Q ss_pred             HHHHHHHhhhhhhhhhhcccccCCCchhhHHhHHHHhhhHhHhh-HHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhc
Q 013910          330 SGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMV-CPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLI  408 (434)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~-~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~  408 (434)
                      +.......++......+..|.+|++.|+++.|+.++.+++|+.+ +|.+.+.+.|..|....+.+.+++++++.+....+
T Consensus       355 ~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~  434 (452)
T PRK11273        355 IVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV  434 (452)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence            11111112223334456779999999999999999999998765 79999988888776666767777777776666543


Q ss_pred             -ccccCC
Q 013910          409 -PFETKG  414 (434)
Q Consensus       409 -~~et~~  414 (434)
                       .+|+|+
T Consensus       435 ~~~~~~~  441 (452)
T PRK11273        435 MIGEKRH  441 (452)
T ss_pred             hccccch
Confidence             344443

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.92  E-value=8.8e-23  Score=197.89  Aligned_cols=311  Identities=17%  Similarity=0.198  Sum_probs=194.6

Q ss_pred             hhhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHHHHHHHHH
Q 013910           22 PLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTF  100 (434)
Q Consensus        22 ~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~  100 (434)
                      +.+.||+|||+++..+.++..++.++.++++|+..++++|++.|++.|... ....+..|+.| ++||++.++...+..+
T Consensus        59 G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  137 (377)
T TIGR00890        59 GLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGL  137 (377)
T ss_pred             HHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcch
Confidence            368999999999999999999999999999999999999999999987653 34445678876 6799999999999999


Q ss_pred             HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHH-HhcCCChhHHhhcCChHHHHHHHHHHHHHcCCCCCCCCccCCC
Q 013910          101 GSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFI-VFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDG  179 (434)
Q Consensus       101 G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~~~-~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~  179 (434)
                      |..+++++...+.+..+||+.|.+.++..++..+.. ++++|+|+-.    +                ++   +      
T Consensus       138 g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~----~----------------~~---~------  188 (377)
T TIGR00890       138 GSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQL----I----------------KT---N------  188 (377)
T ss_pred             hHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheecCchhc----c----------------cc---C------
Confidence            988776666666667799999999888877765444 4455544200    0                00   0      


Q ss_pred             CCCCcccccCCCCccccccccccccccccccchhhhccC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCc
Q 013910          180 TNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFS-PRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSS  258 (434)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (434)
                       .+.+      ++        +         .+.+..++ ++.+. ..   ...+...+.......+.+.+..+.     
T Consensus       189 -~~~~------~~--------~---------~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~-----  235 (377)
T TIGR00890       189 -IEVS------VK--------D---------YTVWEMLRTPQFWV-LY---LSFFLNAVSGLLLIGLYKPYGQSL-----  235 (377)
T ss_pred             -cccc------hh--------h---------hhHHHHHcCccHHH-HH---HHHHHHhHHHHHHHHHHHHHHHHc-----
Confidence             0000      00        0         00111111 22211 11   111111111111111111111100     


Q ss_pred             ccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHH
Q 013910          259 SILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQS--NILLTALLSGARMFS  336 (434)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  336 (434)
                            +.+............+..+++.++.+++.||+|||+.+..+..+..+....+.....  ............+..
T Consensus       236 ------~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  309 (377)
T TIGR00890       236 ------GLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTW  309 (377)
T ss_pred             ------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHh
Confidence                  111111122334455677889999999999999999888776666554443332221  111111111111122


Q ss_pred             hhhhhhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHH
Q 013910          337 MGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLS  401 (434)
Q Consensus       337 ~~~~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~  401 (434)
                      ....+....+.+|.+|++.|+++.|+.+....+|+.++|.+.+.+.+..|....+.+.+++++++
T Consensus       310 g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       310 GGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS  374 (377)
T ss_pred             ccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence            22334556678899999999999999999999999999999998888766656666666655554

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.92  E-value=2.3e-22  Score=201.35  Aligned_cols=327  Identities=13%  Similarity=0.062  Sum_probs=186.6

Q ss_pred             hhhhhhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCchhhhhhhhhccCCCcchhHHHHHHHHH
Q 013910           19 LLEPLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFW   98 (434)
Q Consensus        19 ~~~~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~   98 (434)
                      ++..++.||+|||+.+..+.+++.++.++.++++|+..++++|++.|++.+.......++.|++|+++||++.++.+...
T Consensus        89 ~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~rg~a~g~~~~~~  168 (476)
T PLN00028         89 LAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFVSCQYWMSTMFNGKIVGTANGIAAGWG  168 (476)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHhcChhheeHHHHHHHHHH
Confidence            34457899999999999999999999999999999999999999999987754334456889999999999999988776


Q ss_pred             HHHHHHHHHHHHHH----hc-----ccchHHHHHHHHHHHHHHHHHHHhcC-CChhHHhhcCChHHHHHHHHHHHHHcCC
Q 013910           99 TFGSVSEAALAWIV----MP-----ILTWRWLLALSAIPAFVLLIFIVFMP-ESPRYLCTKGRITDAHNILDKIAQFNQT  168 (434)
Q Consensus        99 ~~G~~l~~~l~~~~----~~-----~~~Wr~~f~~~~i~~~l~~~~~~~lp-ESp~~l~~~~~~~~a~~~l~~~~~~~~~  168 (434)
                      .+|..+++.+...+    ..     ..+||+.|++.+++.++..+..++++ |.|+     ++.++.+       +    
T Consensus       169 ~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~-----~~~~~~~-------~----  232 (476)
T PLN00028        169 NLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPD-----GNYRELK-------K----  232 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCC-----CchhhHH-------h----
Confidence            66766665444322    11     25899999999888777655544444 3342     1100000       0    


Q ss_pred             CCCCCCccCCCCCCCcccccCCCCccccccccccccccccccchhhhc-cCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013910          169 SLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLML-FSPRFFKTTILLWVLYFGNSFVYYGIVLLAS  247 (434)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  247 (434)
                                     +.   +.++..              ....++.. .+++.    ...+..++......++...+.+
T Consensus       233 ---------------~~---~~~~~~--------------~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~p  276 (476)
T PLN00028        233 ---------------SG---TMPKDS--------------FSKVLRYGVTNYRT----WILALTYGYSFGVELTMDNIIA  276 (476)
T ss_pred             ---------------cC---cccccc--------------HHHHHHHHHcCchh----HHHHHHHHHHHHHHHHHHhHHH
Confidence                           00   000000              00011111 11221    1222222222222233332322


Q ss_pred             hhhcccCCCCcccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhH-------HHHHHHHHHHHHHHHHHhhh
Q 013910          248 ELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKL-------SMTIMFIFVCIFLLPLVTLQ  320 (434)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~-------~~~~~~~~~~~~~~~~~~~~  320 (434)
                      .+....          .+.+.........+..+++++|.+++|+++||++||.       .......+.++.++.+....
T Consensus       277 ~~l~~~----------~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~  346 (476)
T PLN00028        277 EYFYDR----------FGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRAN  346 (476)
T ss_pred             HHHHHh----------cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccc
Confidence            222110          0111112222334556778899999999999998762       22222222222222222222


Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHH
Q 013910          321 SNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVL  400 (434)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i  400 (434)
                      +............++..+..+..+.+.+|+.| +.|+++.|+.+..+++|++++|.+.. ..+..+....+++++++.++
T Consensus       347 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i  424 (476)
T PLN00028        347 SLGAAIVVMILFSIFVQAACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIA  424 (476)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHH
Confidence            22221111111112222334456677778765 68999999999988898888887654 11222234566777777777


Q ss_pred             HHHHHHhcc
Q 013910          401 SVVVILLIP  409 (434)
Q Consensus       401 ~~~~~~~~~  409 (434)
                      +.++.++..
T Consensus       425 ~~~~~~~~~  433 (476)
T PLN00028        425 CTLPVAFIH  433 (476)
T ss_pred             HHHHHHhee
Confidence            776666554

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.92  E-value=1.6e-22  Score=202.51  Aligned_cols=333  Identities=14%  Similarity=0.136  Sum_probs=198.1

Q ss_pred             hhHhhhcchHHHHHHHHHHHHHHHHHhh--cccHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHHHHHHHH
Q 013910           23 LYFIFAFSRMSILGGALVTFVAGLLSAF--SPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWT   99 (434)
Q Consensus        23 ~~~~~~GRr~~l~~~~~~~~i~~~~~~~--~~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~   99 (434)
                      .+.||+|||+.+..+.+++++++++..+  ..++..+++.|+++|++.+... ....++.|+.|+++||+..++...+..
T Consensus        98 ~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  177 (465)
T TIGR00894        98 YLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQ  177 (465)
T ss_pred             HHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            6899999999999999999998887644  3668899999999999998864 556788999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHHHHHHH-hcCCChhHHhhcCChHHHHHHHHHHHHHcCCCCCCCCccC
Q 013910          100 FGSVSEAALAWIVMPI-LTWRWLLALSAIPAFVLLIFIV-FMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTS  177 (434)
Q Consensus       100 ~G~~l~~~l~~~~~~~-~~Wr~~f~~~~i~~~l~~~~~~-~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~  177 (434)
                      +|.++++.+...+.+. .+||+.|++.++++++..+.++ +.||+|+..   .+.++.++  +.+.+..           
T Consensus       178 ~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~---~~~~~~~~--~~i~~~~-----------  241 (465)
T TIGR00894       178 LGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIH---PCISKFEK--KYINSSL-----------  241 (465)
T ss_pred             HHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccC---CCCCHHHH--HHHHhhc-----------
Confidence            9999999998887777 4999999999998887765544 467888521   11111111  1111000           


Q ss_pred             CCCCCCcccccCCCCccccccccccccccccccchhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 013910          178 DGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCS  257 (434)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (434)
                            +++.++  .            ..+   ..++..++.+   .........+.....++.+..+.|.+.....   
T Consensus       242 ------~~~~~~--~------------~~~---~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~---  292 (465)
T TIGR00894       242 ------QGQKGS--T------------RQS---LPIKAIPKSL---PVWAIWFAIFGHFWLYTILPTYLPTFISWVL---  292 (465)
T ss_pred             ------ccccCC--C------------CCC---CCHHHHhcCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence                  000000  0            000   0122222221   1112233333444444444444444332110   


Q ss_pred             cccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHH--------HHHHHH--HHHHHHHHHh-hhhhHHHH
Q 013910          258 SSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSM--------TIMFIF--VCIFLLPLVT-LQSNILLT  326 (434)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~--------~~~~~~--~~~~~~~~~~-~~~~~~~~  326 (434)
                             +.+.........+..+..+++.+++|+++||+++|+..        ..+...  ..+..+.... ..+.....
T Consensus       293 -------g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (465)
T TIGR00894       293 -------RVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTI  365 (465)
T ss_pred             -------CcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHH
Confidence                   01111111223344567788999999999998655211        111111  1111111111 11112222


Q ss_pred             HHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhhhc--c-hhhHHHHHHHHHHHHHH
Q 013910          327 ALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSC--H-QTAAILLLEALIVLSVV  403 (434)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~--g-~~~~~~~~~~~~~i~~~  403 (434)
                      ........+..+.....+....|..|. .++++.|+.+..+.++++++|.+.+.+.+..  + ....+.+.++..+++.+
T Consensus       366 ~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i  444 (465)
T TIGR00894       366 IILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVI  444 (465)
T ss_pred             HHHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHH
Confidence            222222222222233445556677776 8999999999999999999999998776643  2 23455666666666665


Q ss_pred             HHHhc
Q 013910          404 VILLI  408 (434)
Q Consensus       404 ~~~~~  408 (434)
                      +..+.
T Consensus       445 ~~~~~  449 (465)
T TIGR00894       445 FYLIF  449 (465)
T ss_pred             Heeee
Confidence            55444

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.91  E-value=1.3e-21  Score=184.79  Aligned_cols=313  Identities=20%  Similarity=0.246  Sum_probs=207.3

Q ss_pred             hhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHHHHHHHHHH
Q 013910           23 LYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFG  101 (434)
Q Consensus        23 ~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G  101 (434)
                      .++||+-||+.++....++.++++++++++||..+.++|++.|++-|... +...+..+..|+++|+++.+....+.+++
T Consensus        70 ~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA  149 (394)
T COG2814          70 LLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLA  149 (394)
T ss_pred             HHHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999988864 45567789999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH-HHHhcCCChhHHhhcCChHHHHHHHHHHHHHcCCCCCCCCccCCCC
Q 013910          102 SVSEAALAWIVMPILTWRWLLALSAIPAFVLLI-FIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGT  180 (434)
Q Consensus       102 ~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~-~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~  180 (434)
                      .++|.+++.++.+..|||+.|...+..+++..+ .+..+|  |+-.     .                            
T Consensus       150 ~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~-----~----------------------------  194 (394)
T COG2814         150 TVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP--PSEI-----S----------------------------  194 (394)
T ss_pred             HHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC--CccC-----C----------------------------
Confidence            999999999999999999999999888887644 566788  3200     0                            


Q ss_pred             CCCcccccCCCCccccccccccccccccccchhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccc
Q 013910          181 NDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSI  260 (434)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (434)
                          +... .+                 ..+..+.+.+|+.+...... .+++.-.+..|.+  ..|.+.+..       
T Consensus       195 ----~~~~-~~-----------------~~~~~~~l~~p~v~~~l~~t-~l~~~g~F~~ftY--i~P~L~~v~-------  242 (394)
T COG2814         195 ----GSLP-GP-----------------LRTLLRLLRRPGVLLGLLAT-FLFMTGHFALYTY--IRPFLESVA-------  242 (394)
T ss_pred             ----CCCC-cc-----------------hhHHHHHhcCchHHHHHHHH-HHHHcchhhhHHh--HHHHHHHcc-------
Confidence                0000 00                 00012223334433333222 2222222222222  222222111       


Q ss_pred             ccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHhhh
Q 013910          261 LLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQ-SNILLTALLSGARMFSMGT  339 (434)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  339 (434)
                          +.+....-...+..++++++|..++|.+.|| +.|+.+........+.++.+.+.. +.+......+.. .+...+
T Consensus       243 ----g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~w-g~a~~~  316 (394)
T COG2814         243 ----GFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALALLFLW-GFAFSP  316 (394)
T ss_pred             ----CCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH-HHHhhh
Confidence                1122233345567778899999999999999 777777766555555444444322 222222222221 111122


Q ss_pred             -hhhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcc
Q 013910          340 -FIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIP  409 (434)
Q Consensus       340 -~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~  409 (434)
                       ........++ .-++.+..+.++....-++|..++..+.+.++|..|.....++-+...+++.++.....
T Consensus       317 ~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~  386 (394)
T COG2814         317 ALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSA  386 (394)
T ss_pred             hhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHH
Confidence             1223334455 33577899999999999999999998888888886655555555566666655555443

>PRK03699 putative transporter; Provisional

Probab=99.91  E-value=2.1e-21  Score=190.16  Aligned_cols=318  Identities=14%  Similarity=0.176  Sum_probs=198.8

Q ss_pred             hhhhhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHHHHHHH
Q 013910           20 LEPLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFW   98 (434)
Q Consensus        20 ~~~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~   98 (434)
                      +.++..||+|||+.+..+..+..++.++.++++|+..+++.|+++|++.|... ....++.|+.|+++||...+..+...
T Consensus        61 ~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~  140 (394)
T PRK03699         61 LNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFF  140 (394)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHH
Confidence            44578999999999999999999999999999999999999999999887653 44567889999999999999988888


Q ss_pred             HHHHHHHHHHHHHHh-cccchHHHHHHHHHHHHHHHHHHHhcCCChhHHhhcCChHHHHHHHHHHHHHcCCCCCCCCccC
Q 013910           99 TFGSVSEAALAWIVM-PILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTS  177 (434)
Q Consensus        99 ~~G~~l~~~l~~~~~-~~~~Wr~~f~~~~i~~~l~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~  177 (434)
                      .+|..+++.+...+. +..+||+.|.+.+++.++..+..++ .+.|+.    ++.                    +    
T Consensus       141 ~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~~~-~~~p~~----~~~--------------------~----  191 (394)
T PRK03699        141 SMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILTLF-SEFPAL----GKH--------------------A----  191 (394)
T ss_pred             HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHh-cCCccc----ccc--------------------C----
Confidence            888888887765544 4579999999888776665443332 222220    000                    0    


Q ss_pred             CCCCCCcccccCCCCccccccccccccccccccchhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 013910          178 DGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCS  257 (434)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (434)
                            ++    +++ +     .     .+..       +++    +........+.....++++..+.+.+..+..   
T Consensus       192 ------~~----~~~-~-----~-----~~~~-------~~~----~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~---  236 (394)
T PRK03699        192 ------PK----ADK-P-----V-----AKEK-------WGI----GVLFLAIAALLYILAQLTFISWVPEYAQKKF---  236 (394)
T ss_pred             ------cc----ccC-c-----c-----cccc-------CCh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---
Confidence                  00    000 0     0     0000       011    1112222222222333444444443332110   


Q ss_pred             cccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHh
Q 013910          258 SSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSM  337 (434)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (434)
                             +.+............+...+|.+++++++||++||+.+.....+..+.+..+....+........+...++..
T Consensus       237 -------g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~  309 (394)
T PRK03699        237 -------GMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSS  309 (394)
T ss_pred             -------CCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Confidence                   0000111111223345678899999999999999998877665555443333322222222122122222233


Q ss_pred             hhhhhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcc
Q 013910          338 GTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIP  409 (434)
Q Consensus       338 ~~~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~  409 (434)
                      +.++....+..|..|.+ ++...|....++++|+.++|.+.+.+.+..|....++..+++++++.+..+...
T Consensus       310 ~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  380 (394)
T PRK03699        310 AIYTTIITLGSQQTKVA-SPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCILLG  380 (394)
T ss_pred             HHHHHHHHHHHHHccCC-CHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHHHH
Confidence            44555566677777754 677889999999999999999999998877766677776777666665555543

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.91  E-value=1.3e-21  Score=194.33  Aligned_cols=341  Identities=15%  Similarity=0.179  Sum_probs=198.3

Q ss_pred             hhHhhhcchHHHHHHHHHHHHHHHHHhhc----ccHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHHHHHH
Q 013910           23 LYFIFAFSRMSILGGALVTFVAGLLSAFS----PNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTF   97 (434)
Q Consensus        23 ~~~~~~GRr~~l~~~~~~~~i~~~~~~~~----~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~   97 (434)
                      ++.||+|||+.+..+.++..++.++.++.    +++..+.+.|++.|++.|... ....++.|+.|+++||+..++++.+
T Consensus        83 ~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~  162 (438)
T TIGR00712        83 SVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCA  162 (438)
T ss_pred             hhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHH
Confidence            68999999999999999988888877654    567888999999999987753 4456778999999999999999999


Q ss_pred             HHHHHHHHHHHHHH-HhcccchHHHHHHHHHHHHHHH-HHHHhcCCChhHHhhcCChHHHHHHHHHHHHHcCCCCCCCCc
Q 013910           98 WTFGSVSEAALAWI-VMPILTWRWLLALSAIPAFVLL-IFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNL  175 (434)
Q Consensus        98 ~~~G~~l~~~l~~~-~~~~~~Wr~~f~~~~i~~~l~~-~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~  175 (434)
                      ..+|..+++.+... +....+||+.|++.++.+++.. +..+++||+|+....+. . +..         ++ +      
T Consensus       163 ~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~-~~~---------~~-~------  224 (438)
T TIGR00712       163 HNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPP-I-EEY---------RN-D------  224 (438)
T ss_pred             HHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCC-c-hhc---------cc-c------
Confidence            99999888876554 3335689999999888877654 45566899886421000 0 000         00 0      


Q ss_pred             cCCCCCCCcccccCCCCccccccccccccccccccchhhhccC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 013910          176 TSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFS-PRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQS  254 (434)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (434)
                            ..++..++. +.        +. ..++.  .....++ ++.+....    ..+.....+++...+.+.+..+..
T Consensus       225 ------~~~~~~~~~-~~--------~~-~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~p~~l~~~~  282 (438)
T TIGR00712       225 ------YPDDYNEKA-EQ--------EL-TAKEI--FMQYVLPNKLLWYIAI----ANVFVYLLRYGVLDWSPTYLKEVK  282 (438)
T ss_pred             ------ccccccccc-cc--------cc-chHHH--HHHHHccCchHHHHHH----HHHHHHHHHHHHHHhHHHHHHHcc
Confidence                  000000000 00        00 00000  0011222 22221111    111122223334333333322110


Q ss_pred             CCCcccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHH---HHHHHHHh-h-hhhHHHHHHH
Q 013910          255 KCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVC---IFLLPLVT-L-QSNILLTALL  329 (434)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~---~~~~~~~~-~-~~~~~~~~~~  329 (434)
                                +.+............+.++++.+++++++||+++++....+.....   +....... . .+.+......
T Consensus       283 ----------g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (438)
T TIGR00712       283 ----------HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICM  352 (438)
T ss_pred             ----------CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence                      1111111223344556788999999999999954321112211111   11111111 1 1112111111


Q ss_pred             HHHHHHHhhhhhhhhhhcccccCCCchhhHHhHHHHhhhHhH-hhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhc
Q 013910          330 SGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGG-MVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLI  408 (434)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~-~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~  408 (434)
                      +.......++.........|.+|++.|+++.|+.+.++++++ .++|.+.+.+.|..|....+.+..+.++++.+..+++
T Consensus       353 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  432 (438)
T TIGR00712       353 IVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV  432 (438)
T ss_pred             HHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence            111111122222233457799999999999999999999875 5789999988887776666677777777888888888


Q ss_pred             ccccC
Q 013910          409 PFETK  413 (434)
Q Consensus       409 ~~et~  413 (434)
                      .||.|
T Consensus       433 ~~~~~  437 (438)
T TIGR00712       433 MIGEK  437 (438)
T ss_pred             Hhhcc
Confidence            88876

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.90  E-value=6.1e-21  Score=185.36  Aligned_cols=313  Identities=18%  Similarity=0.149  Sum_probs=187.1

Q ss_pred             hhHhhhcchHHHHH-HHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCc-hhhhhhhhhccCCCcchhH--HHHHHHHH
Q 013910           23 LYFIFAFSRMSILG-GALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKW--MVVFSTFW   98 (434)
Q Consensus        23 ~~~~~~GRr~~l~~-~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~--~~~~~~~~   98 (434)
                      .+.||+|||+.++. +.....++.++.++++|+..+++.|++.|.+.+.. +....+..|+.|+++|++.  .+....+.
T Consensus        55 ~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (375)
T TIGR00899        55 TRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQI  134 (375)
T ss_pred             HHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHH
Confidence            58999999987665 45555667778889999999999999998766544 3344566788888877754  57777788


Q ss_pred             HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH-HHhcCCChhHHhhcCChHHHHHHHHHHHHHcCCCCCCCCccC
Q 013910           99 TFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIF-IVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTS  177 (434)
Q Consensus        99 ~~G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~~-~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~  177 (434)
                      .+|.++++.++..+.+..+||+.|++.+++.++..+. .+++||+|++...+                            
T Consensus       135 ~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------  186 (375)
T TIGR00899       135 SLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAPGA----------------------------  186 (375)
T ss_pred             hHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcccCcccc----------------------------
Confidence            8999999998888888889999999998877666544 45589877521000                            


Q ss_pred             CCCCCCcccccCCCCccccccccccccccccccchhhhcc-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q 013910          178 DGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLF-SPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKC  256 (434)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (434)
                          +.+.     +                     ....+ +++.+.........+............+.....      
T Consensus       187 ----~~~~-----~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  230 (375)
T TIGR00899       187 ----LTRL-----E---------------------VRGLLASRDTRLLFVACTLMWGCNILYIINMPLLIIHEL------  230 (375)
T ss_pred             ----cCcc-----h---------------------hhhhhcCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHHc------
Confidence                0000     0                     00001 111111111111122211111111111111000      


Q ss_pred             CcccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 013910          257 SSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFS  336 (434)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (434)
                              +.+...............+++..+++++.||+|||+.+..+.....+.........+.+..........++.
T Consensus       231 --------g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  302 (375)
T TIGR00899       231 --------GLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFI  302 (375)
T ss_pred             --------CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    011111111122333455677888999999999999887765554443333222222222211111111112


Q ss_pred             hhhhhhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhc
Q 013910          337 MGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLI  408 (434)
Q Consensus       337 ~~~~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~  408 (434)
                      ....+....+..|..|++ |+++.++.+...++|+.++|.+.+.+.+..+....+.+.+++++++.+...++
T Consensus       303 g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  373 (375)
T TIGR00899       303 GILAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLLI  373 (375)
T ss_pred             HHHHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhee
Confidence            223445566778999876 56999999999999999999999988887665566666667666666655443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.90  E-value=6.9e-21  Score=182.58  Aligned_cols=293  Identities=27%  Similarity=0.359  Sum_probs=208.3

Q ss_pred             hhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHHHHHHHHHH
Q 013910           23 LYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFG  101 (434)
Q Consensus        23 ~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G  101 (434)
                      .+.||+|||+.+..+.....++.+...+.+++..+++.|++.|++.+... ....++.|+.|+|+|++..++.+....+|
T Consensus        56 ~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  135 (352)
T cd06174          56 YLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLG  135 (352)
T ss_pred             HHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999988764 45678899999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcCCChhHHhhcCChHHHHHHHHHHHHHcCCCCCCCCccCCCCC
Q 013910          102 SVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTN  181 (434)
Q Consensus       102 ~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~  181 (434)
                      ..+++.++..+.+..+||+.+.+.+++.++..+...+++  |+.                                    
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~------------------------------------  177 (352)
T cd06174         136 ALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL--RLL------------------------------------  177 (352)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH--HHH------------------------------------
Confidence            999999998888888899999998887777655554443  100                                    


Q ss_pred             CCcccccCCCCccccccccccccccccccchhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCcccc
Q 013910          182 DLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSIL  261 (434)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (434)
                                                                  .......+.....+.....+.+.+..+.        
T Consensus       178 --------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------  205 (352)
T cd06174         178 --------------------------------------------LLLALAFFLLSFGYYGLLTYLPLYLQEV--------  205 (352)
T ss_pred             --------------------------------------------HHHHHHHHHHHhHHHHHHHHHHHHHHHh--------
Confidence                                                        0011111111111111111111111100        


Q ss_pred             cccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhH-HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhh
Q 013910          262 LSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKL-SMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTF  340 (434)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (434)
                        .+.+............+..+++..+.+.+.||.|||+ .+..+..+..+.........+.+..........++.....
T Consensus       206 --~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  283 (352)
T cd06174         206 --LGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAF  283 (352)
T ss_pred             --cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccc
Confidence              0111122233445556778889999999999999999 8877776666555544433322222222222222333445


Q ss_pred             hhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHh
Q 013910          341 IIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILL  407 (434)
Q Consensus       341 ~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~  407 (434)
                      +....+..|..|++.|+++.|+.+...++++.++|.+.+.+.+..+....+.+.+++.+++.+..++
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~~  350 (352)
T cd06174         284 PALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLL  350 (352)
T ss_pred             hhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhee
Confidence            6778899999999999999999999999999999999998887666666777777777777665543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.90  E-value=8.2e-22  Score=191.24  Aligned_cols=316  Identities=16%  Similarity=0.226  Sum_probs=185.8

Q ss_pred             hhhhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHHHHHHHH
Q 013910           21 EPLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWT   99 (434)
Q Consensus        21 ~~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~   99 (434)
                      ..++.||+|||+.+..+.++..++.++.++++++..+++.|++.|++.+... ....++.|+.|+++|++..++.+.+..
T Consensus        50 ~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  129 (379)
T TIGR00881        50 MGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHN  129 (379)
T ss_pred             hhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccch
Confidence            3478999999999999999999999999999999999999999999988754 556688999999999999999999999


Q ss_pred             HHHHHHH-HHHHHHhcccchHHHHHHHHHHHHHH-HHHHHhcCCChhHHhhcCChHHHHHHHHHHHHHcCCCCCCCCccC
Q 013910          100 FGSVSEA-ALAWIVMPILTWRWLLALSAIPAFVL-LIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTS  177 (434)
Q Consensus       100 ~G~~l~~-~l~~~~~~~~~Wr~~f~~~~i~~~l~-~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~  177 (434)
                      +|..+++ .++..+....+||+.|.+.++..++. ++..++.||+|+..   ++.++                ++.  . 
T Consensus       130 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~----------------~~~--~-  187 (379)
T TIGR00881       130 VGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSC---GLPPA----------------EEM--P-  187 (379)
T ss_pred             hHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCCcccc---ccCcc----------------ccC--c-
Confidence            9999999 45666666789999999888766655 34455678877521   00000                000  0 


Q ss_pred             CCCCCCcccccCCCCccccccccccccccccccchhhhccC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q 013910          178 DGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFS-PRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKC  256 (434)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (434)
                        .++.++..+ .++        ++. ..++  .....+++ +..+.    .....+......++...+.+.+....   
T Consensus       188 --~~~~~~~~~-~~~--------~~~-~~~~--~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~---  246 (379)
T TIGR00881       188 --NEEPDGDAE-KKE--------EEL-TKKQ--IFLQYVLLNKVLWY----ISLGYVFVYVVRTGILDWSPLYLTQE---  246 (379)
T ss_pred             --ccccccccc-ccc--------ccc-cchH--HHHHHHHhcchHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence              000000000 000        000 0000  01112222 22221    11111111112222222222221100   


Q ss_pred             CcccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhc-hhHH-HHHHHHHH-HHHHHHHHh--hhhhHHHHHHHHH
Q 013910          257 SSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVG-RKLS-MTIMFIFV-CIFLLPLVT--LQSNILLTALLSG  331 (434)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~g-RR~~-~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~  331 (434)
                             .+.+............+.+++|.++++++.||.. ||+. ........ .+.+.....  ..+..........
T Consensus       247 -------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (379)
T TIGR00881       247 -------KGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFA  319 (379)
T ss_pred             -------hCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHH
Confidence                   0111111222334455677889999999999863 3332 22211111 111111111  1111111111111


Q ss_pred             HHHHHhhhhhhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhhhcc
Q 013910          332 ARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH  386 (434)
Q Consensus       332 ~~~~~~~~~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g  386 (434)
                      ...+..++....+.+.+|.+|++.|+++.|+.+.++.+++.++|.+.+.+.+..|
T Consensus       320 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g  374 (379)
T TIGR00881       320 LGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFG  374 (379)
T ss_pred             HHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhc
Confidence            1122334445567788999999999999999999999999999999998888654

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.90  E-value=2.4e-21  Score=187.08  Aligned_cols=300  Identities=13%  Similarity=0.107  Sum_probs=189.2

Q ss_pred             hhhHhhhcchHHHHHHHHHHHHHHHHHhhcc-----cHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHHHH
Q 013910           22 PLYFIFAFSRMSILGGALVTFVAGLLSAFSP-----NYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFS   95 (434)
Q Consensus        22 ~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~-----~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~   95 (434)
                      ..+.||+|||+.+..+.++..++.++..+++     |+..+++.|++.|++.+... ....++.|+.|+++|++..++.+
T Consensus        55 G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (365)
T TIGR00900        55 GALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQ  134 (365)
T ss_pred             hHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHH
Confidence            3689999999999999999888888887777     99999999999999887754 45678899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhc--CCChhHHhhcCChHHHHHHHHHHHHHcCCCCCCC
Q 013910           96 TFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFM--PESPRYLCTKGRITDAHNILDKIAQFNQTSLPSG  173 (434)
Q Consensus        96 ~~~~~G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~~~~~l--pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~  173 (434)
                      .+..+|.++++.++..+.+..+||+.|++.++..++..+..+.+  ||+++    +++                      
T Consensus       135 ~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~----------------------  188 (365)
T TIGR00900       135 AVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAA----SEI----------------------  188 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCC----ccc----------------------
Confidence            99999999999999888888899999998877666554443332  32211    000                      


Q ss_pred             CccCCCCCCCcccccCCCCccccccccccccccccccchhhhccCcchHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhcc
Q 013910          174 NLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIV-LLASELSGS  252 (434)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~  252 (434)
                                ++    .+++ ..++          ....++.+++++............   ...+++.. .+.+.+...
T Consensus       189 ----------~~----~~~~-~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  240 (365)
T TIGR00900       189 ----------QA----LSNA-VLRD----------TREGIKFVLKNPLLRTLLLLALLF---NLVFAPAIVALFPYVQSK  240 (365)
T ss_pred             ----------cc----cchh-HHHH----------HHhHHHHHHcCcHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHH
Confidence                      00    0000 0000          001122223222222222211111   11111111 111111110


Q ss_pred             cCCCCcccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHH
Q 013910          253 QSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQS-NILLTALLSG  331 (434)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  331 (434)
                      .          .+.+............++.+++.++.+++.||.+||+.+..+..+.++.........+ .+........
T Consensus       241 ~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (365)
T TIGR00900       241 Y----------LGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFA  310 (365)
T ss_pred             H----------hCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHH
Confidence            0          0011111222233445677888999999999999999887765555544443333222 2221111111


Q ss_pred             HHHHHhhhhhhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhhhc
Q 013910          332 ARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSC  385 (434)
Q Consensus       332 ~~~~~~~~~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~  385 (434)
                      ..++.....+....+..|..|++.|+++.|+.+.+.++++.++|.+.+.+.|..
T Consensus       311 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~  364 (365)
T TIGR00900       311 IGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHL  364 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            112222334566788899999999999999999999999999999999887753

>PRK12382 putative transporter; Provisional

Probab=99.90  E-value=9.1e-21  Score=185.53  Aligned_cols=308  Identities=18%  Similarity=0.067  Sum_probs=187.6

Q ss_pred             hhhHhhhcchHHHHHHHHHHHHHHHHH---hh-----cccHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHH
Q 013910           22 PLYFIFAFSRMSILGGALVTFVAGLLS---AF-----SPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMV   92 (434)
Q Consensus        22 ~~~~~~~GRr~~l~~~~~~~~i~~~~~---~~-----~~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~   92 (434)
                      ..+.||+|||+.+..+.+...++.+..   +.     .+|+..++++|+++|++.+... ....+..|+.|+++|+++.+
T Consensus        72 G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~  151 (392)
T PRK12382         72 GRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMS  151 (392)
T ss_pred             hHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhh
Confidence            368999999999999888776654422   22     3578999999999999987643 34567789999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcCCChhHHhhcCChHHHHHHHHHHHHHcCCCCCC
Q 013910           93 VFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPS  172 (434)
Q Consensus        93 ~~~~~~~~G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~  172 (434)
                      +.+.+...|..++++++..+.+..+||+.+.+..+..++........||.|..                           
T Consensus       152 ~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------  204 (392)
T PRK12382        152 WNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAWAFNGTVRKVPAH---------------------------  204 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhccCCCCC---------------------------
Confidence            99999999999999998888778899998776655443332222222332110                           


Q ss_pred             CCccCCCCCCCcccccCCCCccccccccccccccccccchhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 013910          173 GNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGS  252 (434)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  252 (434)
                                 ++     ++.+     .      +   +..+.++.+     .......    ...+.....+.+.+..+
T Consensus       205 -----------~~-----~~~~-----~------~---~~~~~~~~~-----~~~~~l~----~~~~~~~~~~~~~~~~~  245 (392)
T PRK12382        205 -----------AG-----ERPS-----L------W---SVVGLIWKP-----GLGLALQ----GVGFAVIGTFVSLYFAS  245 (392)
T ss_pred             -----------cc-----cCch-----H------H---HHHHHHHHh-----HHHHHHH----HHHHhHHHHHHHHHHHh
Confidence                       00     0000     0      0   000001101     0011010    11111111111111111


Q ss_pred             cCCCCcccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 013910          253 QSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGA  332 (434)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (434)
                      .+           ....  ........+..+++.++.+.+.||+|||+.+..+..+..+.........+...........
T Consensus       246 ~~-----------~~~~--~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  312 (392)
T PRK12382        246 KG-----------WAMA--GFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALT  312 (392)
T ss_pred             cC-----------Cchh--HHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            00           0011  1122234455678889999999999999888776655554443333322222211111111


Q ss_pred             HHHHhhhhhhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhc
Q 013910          333 RMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLI  408 (434)
Q Consensus       333 ~~~~~~~~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~  408 (434)
                      ........+.......|.+|++.|+++.|+.++...+++.++|.+.+.+.+..|....+.+.+.+.+++.+..++.
T Consensus       313 g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  388 (392)
T PRK12382        313 GAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILS  388 (392)
T ss_pred             HHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhh
Confidence            1111122344556678899999999999999999999999999999988887776667777777777776666544

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.89  E-value=4.1e-20  Score=185.63  Aligned_cols=326  Identities=18%  Similarity=0.159  Sum_probs=200.1

Q ss_pred             hhhhhhhhhHhhh-----cchHH-HHHHHHHHHHHHHHHhhc---ccHHHHHHHHHHHHhcCCCc-hhhhhhhhhccCCC
Q 013910           16 PKLLLEPLYFIFA-----FSRMS-ILGGALVTFVAGLLSAFS---PNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPS   85 (434)
Q Consensus        16 ~~~~~~~~~~~~~-----GRr~~-l~~~~~~~~i~~~~~~~~---~~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~   85 (434)
                      .|.++.| +.||+     |||+. +..+.+...++..+.++.   +++..+.+.|++.|++.+.. .....+..|++|++
T Consensus        61 ~~~l~gp-l~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~  139 (491)
T PRK11010         61 FKFLWSP-LMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAE  139 (491)
T ss_pred             HHHHHHH-HHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence            4555554 78999     99986 556666666666666665   46888999999999877654 34557889999999


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHhc-ccchHHHHHHHHHHHHHHHHHHHhcCCChhHHhhcCChHHHHHHHHHHHH
Q 013910           86 NRGKWMVVFSTFWTFGSVSEAALAWIVMP-ILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQ  164 (434)
Q Consensus        86 ~Rg~~~~~~~~~~~~G~~l~~~l~~~~~~-~~~Wr~~f~~~~i~~~l~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~  164 (434)
                      +||+..++.+.++.+|.++++.+...+.+ ..|||..|++.++..++..+..+++||+|+..   .+ ++          
T Consensus       140 ~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~~~e~~~~~---~~-~~----------  205 (491)
T PRK11010        140 ERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLLAPEPTDTI---PV-PK----------  205 (491)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCcccc---cc-cc----------
Confidence            99999999999999999999988888777 57999999998887777666666678875410   00 00          


Q ss_pred             HcCCCCCCCCccCCCCCCCcccccCCCCccccccccccccccccccchhhhccCcchHHHHHHHHHHH-HHHHHHHHHHH
Q 013910          165 FNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLY-FGNSFVYYGIV  243 (434)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~  243 (434)
                                          +    .++ .              ...++.++++++...........+ ......   ..
T Consensus       206 --------------------~----~~~-~--------------~~~~l~~~~~~~~~~~~ll~~~l~~~~~~~~---~~  243 (491)
T PRK11010        206 --------------------T----LEQ-A--------------VVAPLRDFFGRNNAWLILLLIVLYKLGDAFA---MS  243 (491)
T ss_pred             --------------------c----hhh-h--------------HHHHHHHHHcCcCHHHHHHHHHHHHHHHHHH---HH
Confidence                                0    000 0              000122222222211121211111 111111   11


Q ss_pred             HHHHhhhcccCCCCcccccccCccchhHHHH-HHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHH---HHhh
Q 013910          244 LLASELSGSQSKCSSSILLSENVQDASVYIN-VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLP---LVTL  319 (434)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~---~~~~  319 (434)
                      ...+.+....           +.+....... .....+..++|.+++++++||+|||+.+.++.+...+..+.   +...
T Consensus       244 ~~~~~l~~~~-----------G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~  312 (491)
T PRK11010        244 LTTTFLIRGV-----------GFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSIT  312 (491)
T ss_pred             HHHHHHHHhc-----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            1111111100           1111111111 12334677899999999999999988776655443332221   1121


Q ss_pred             hhhHHH-HHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHH
Q 013910          320 QSNILL-TALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALI  398 (434)
Q Consensus       320 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~  398 (434)
                      ..+... ........++........+.+..++.|++.+++..|+.++...+|+.+.+.+.+.+.|..|....+.+.++++
T Consensus       313 ~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~  392 (491)
T PRK11010        313 DKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAA  392 (491)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence            112111 1111111111112234457788899999999999999999999999888888899988877666677777777


Q ss_pred             HHHHHHHHhcc
Q 013910          399 VLSVVVILLIP  409 (434)
Q Consensus       399 ~i~~~~~~~~~  409 (434)
                      +++.+..++..
T Consensus       393 l~~l~~~~~~~  403 (491)
T PRK11010        393 VPGLLLLLVCR  403 (491)
T ss_pred             HHHHHHHHHHH
Confidence            78777776664

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.89  E-value=2.7e-21  Score=194.53  Aligned_cols=334  Identities=14%  Similarity=0.158  Sum_probs=197.4

Q ss_pred             hhhhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHHHHHHHH
Q 013910           21 EPLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWT   99 (434)
Q Consensus        21 ~~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~   99 (434)
                      .+++.||+|||+.+..+..+..++++++++++|+..++++|+++|++.+... ....++.|++|+++||+..+++.....
T Consensus        57 ~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~  136 (485)
T TIGR00711        57 TGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVL  136 (485)
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence            3468999999999999999999999999999999999999999999988754 556788999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH-HHHhcCCChhHHhhcCChHHHHHHHHHHH-------HHcCCCCC
Q 013910          100 FGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLI-FIVFMPESPRYLCTKGRITDAHNILDKIA-------QFNQTSLP  171 (434)
Q Consensus       100 ~G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~-~~~~lpESp~~l~~~~~~~~a~~~l~~~~-------~~~~~~~~  171 (434)
                      +|..+++.++..+.++.+||+.|++.+.++++..+ ..+++||+++-  .+++.|.....+....       ...+.+  
T Consensus       137 ~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~g~~l~~~~~~~~~~~~~~~~~--  212 (485)
T TIGR00711       137 VAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPA--ASENFDFLGLLLLSVGLGSLLYGLSEGPE--  212 (485)
T ss_pred             HHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCcccc--ccCCCcHHHHHHHHHHHHHHHHHHhhCCC--
Confidence            99999999998888889999999998877666544 34557775541  1222222211111000       000000  


Q ss_pred             CCCccCCCCCCCcccccCCCCccccc-------cccccccccccccchhhhccCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 013910          172 SGNLTSDGTNDLDEEFSTSEETPLLS-------SARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVL  244 (434)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  244 (434)
                                  ++..++.+......       .....+...+++....+.+.+++...........    .+.+++...
T Consensus       213 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~  276 (485)
T TIGR00711       213 ------------RGWFDSNEILILSITGLVAIIAFVVWELTDDNPLVDLRLFKYRNFTIGCVYMSLL----GLGLYGSFY  276 (485)
T ss_pred             ------------CCCCCchHHHHHHHHHHHHHHHHHHHHHcCCCCccCHHHHcCCChHHHHHHHHHH----HHHHHHHHH
Confidence                        00000000000000       0000000001111122222233333222222222    222222222


Q ss_pred             HHHhhhcccCCCCcccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHh-h--hh
Q 013910          245 LASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT-L--QS  321 (434)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~-~--~~  321 (434)
                      +.+.+....          .+.+............+..+++.++++++.||+|||+.+..+..+..+....+.. .  ..
T Consensus       277 ~~p~~~~~~----------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  346 (485)
T TIGR00711       277 LLPLYLQQV----------LGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDT  346 (485)
T ss_pred             HHHHHHHHh----------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCC
Confidence            222222110          0111112222334455677889999999999999999888776665554443331 1  11


Q ss_pred             hHH-HHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhhh
Q 013910          322 NIL-LTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTS  384 (434)
Q Consensus       322 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~  384 (434)
                      +.. .........+.....+........|..|++.|+++.|+.+....+|+.+++.+.+.+.+.
T Consensus       347 ~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       347 PFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTN  410 (485)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111 111111111111122233445556788999999999999999999999999888877653

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.89  E-value=9.7e-20  Score=178.27  Aligned_cols=123  Identities=19%  Similarity=0.217  Sum_probs=105.3

Q ss_pred             hhhhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHHHHHHHH
Q 013910           21 EPLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWT   99 (434)
Q Consensus        21 ~~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~   99 (434)
                      ..++.||+|||+.+..+.+...++.++..+++|+..+++.|+++|++.+... ....++.|..|+++|++..+..+....
T Consensus        58 ~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~  137 (392)
T PRK10473         58 AGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITC  137 (392)
T ss_pred             HhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence            4479999999999999999999999999999999999999999999987754 456678899999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH-HHHhcCCCh
Q 013910          100 FGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLI-FIVFMPESP  143 (434)
Q Consensus       100 ~G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~-~~~~lpESp  143 (434)
                      +|..+++.++..+.+..+||+.|.+.++..++..+ ....+||++
T Consensus       138 i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~  182 (392)
T PRK10473        138 IIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETR  182 (392)
T ss_pred             HHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            99999998888777778999999998877666544 345677764

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.88  E-value=4.5e-20  Score=181.43  Aligned_cols=319  Identities=16%  Similarity=0.130  Sum_probs=197.9

Q ss_pred             hhhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCchhhhhhhhhccCCCcchhHHHHHHHHHHHH
Q 013910           22 PLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFG  101 (434)
Q Consensus        22 ~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G  101 (434)
                      ..+.||+|||+.+..+.....++.++..+++|+..+++.|++.|++.+..+....++.|..|+++|++..+.......+|
T Consensus        75 g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  154 (408)
T PRK09874         75 GGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGGFVPNANALIATQVPRNKSGWALGTLSTGGVSG  154 (408)
T ss_pred             HHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHH
Confidence            35899999999999999999998888888999999999999999975543444556789999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH-HHHhcCCChhHHhhcCChHHHHHHHHHHHHHcCCCCCCCCccCCCC
Q 013910          102 SVSEAALAWIVMPILTWRWLLALSAIPAFVLLI-FIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGT  180 (434)
Q Consensus       102 ~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~-~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~  180 (434)
                      .++++.++..+.+..+||+.|.+.++..++..+ ..+++||+++-.   .+.++  +..                     
T Consensus       155 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~---------------------  208 (408)
T PRK09874        155 ALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQPV---SKKEM--LHM---------------------  208 (408)
T ss_pred             HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcccc---cchhh--hHH---------------------
Confidence            999999988887788999999988877665544 344566653200   00000  000                     


Q ss_pred             CCCcccccCCCCccccccccccccccccccchhhhccCcchHHHHHHHHHHH-HHH-HHHHHHHHHHHHhhhcccCCCCc
Q 013910          181 NDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLY-FGN-SFVYYGIVLLASELSGSQSKCSS  258 (434)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~  258 (434)
                                         ++          ....+.+++............ ... ....+ +..+.......      
T Consensus       209 -------------------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~------  252 (408)
T PRK09874        209 -------------------RE----------VVTSLKNPKLVLSLFVTTLIIQVATGSIAPI-LTLYVRELAGN------  252 (408)
T ss_pred             -------------------HH----------HHHhCcCCchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcc------
Confidence                               00          000111122221111111111 110 00000 00111111100      


Q ss_pred             ccccccCccchh--HHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 013910          259 SILLSENVQDAS--VYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFS  336 (434)
Q Consensus       259 ~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (434)
                             .....  ......+..+..+++....++++||+|||+.+..+.....+..+......+.+...........+.
T Consensus       253 -------~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  325 (408)
T PRK09874        253 -------VSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAAD  325 (408)
T ss_pred             -------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhh
Confidence                   00000  001112234555677778899999999999888776665554443333222222211111111112


Q ss_pred             hhhhhhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcc
Q 013910          337 MGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIP  409 (434)
Q Consensus       337 ~~~~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~  409 (434)
                      ....+.......+..|.+.|++..++.+.+..+|..++|.+.+.+.+..+....+.+.+++.+++.+..++..
T Consensus       326 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~  398 (408)
T PRK09874        326 GALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSL  398 (408)
T ss_pred             HhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence            2223444555678889999999999999999999999999999888876666677777777777776666543

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.88  E-value=6.3e-20  Score=178.94  Aligned_cols=312  Identities=13%  Similarity=0.093  Sum_probs=186.5

Q ss_pred             hhhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHHHHHHHHH
Q 013910           22 PLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTF  100 (434)
Q Consensus        22 ~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~  100 (434)
                      +++.||+|||+++..+..+..++.++.++++|++.+++.|++.|++.|... ....++.|+.|+++|++..+.+..+..+
T Consensus        59 g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (382)
T PRK10091         59 ALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTV  138 (382)
T ss_pred             HHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHH
Confidence            357999999999999999999999999999999999999999999988754 3345678999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH-HHHhcCCChhHHhhcCChHHHHHHHHHHHHHcCCCCCCCCccCCC
Q 013910          101 GSVSEAALAWIVMPILTWRWLLALSAIPAFVLLI-FIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDG  179 (434)
Q Consensus       101 G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~-~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~  179 (434)
                      |..+++.++..+.+..+||+.|.+.++..++..+ ...++||.++    +.+.+                          
T Consensus       139 g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~----~~~~~--------------------------  188 (382)
T PRK10091        139 ANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIRD----EAKGG--------------------------  188 (382)
T ss_pred             HHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCCc----ccccC--------------------------
Confidence            9999999888887778999999998887665543 4456777542    00000                          


Q ss_pred             CCCCcccccCCCCccccccccccccccccccchhhhccCcchHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhcccCCCCc
Q 013910          180 TNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIV-LLASELSGSQSKCSS  258 (434)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  258 (434)
                         .+                +          .++.+.+++.+.   ........+ ...+... +..+.+...      
T Consensus       189 ---~~----------------~----------~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~------  229 (382)
T PRK10091        189 ---LR----------------E----------QFHFLRSPAPWL---IFAATMFGN-AGVFAWFSYIKPYMMFI------  229 (382)
T ss_pred             ---HH----------------H----------HHHHhcChHHHH---HHHHHHHHH-HHHHHHHHHHHHHHHHh------
Confidence               00                0          000111111111   110111111 1111100 111111100      


Q ss_pred             ccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHh
Q 013910          259 SILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT-LQSNILLTALLSGARMFSM  337 (434)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  337 (434)
                           .+.+............+..+++.++.+++.||+|+|+.+..+..+..+..+.+.. .++.+..............
T Consensus       230 -----~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~  304 (382)
T PRK10091        230 -----SGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGLF  304 (382)
T ss_pred             -----cCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence                 0111112222334555678899999999999999999887766555544332222 2222221111111111111


Q ss_pred             hhhh-hhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhhhcc-hhhHHHHHHHHHHHHHHHHHhcc
Q 013910          338 GTFI-IANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH-QTAAILLLEALIVLSVVVILLIP  409 (434)
Q Consensus       338 ~~~~-~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g-~~~~~~~~~~~~~i~~~~~~~~~  409 (434)
                      +..+ .......+..|.+.++.+  ..+....+|+.++|.+.+.+.|..+ ....+...+..+.+.......+.
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (382)
T PRK10091        305 ALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLYG  376 (382)
T ss_pred             hhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHHHh
Confidence            1112 222344455565555554  3466778999999999998888643 34455555555555544444443

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.88  E-value=1.5e-19  Score=176.80  Aligned_cols=122  Identities=23%  Similarity=0.278  Sum_probs=105.6

Q ss_pred             hhhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHHHHHHHHH
Q 013910           22 PLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTF  100 (434)
Q Consensus        22 ~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~  100 (434)
                      +.+.||+|||+.+..+.++..++.++.++++|++.+++.|+++|++.|... ....++.|++|+|+|++..+....+.++
T Consensus        76 g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~  155 (394)
T PRK10213         76 TQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSI  155 (394)
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHH
Confidence            468999999999999999999999999999999999999999999988754 4556788999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH-HHhcCCCh
Q 013910          101 GSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIF-IVFMPESP  143 (434)
Q Consensus       101 G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~~-~~~lpESp  143 (434)
                      |.++++.++..+.+..+||+.|++.++.+++..+. ....||+|
T Consensus       156 g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~  199 (394)
T PRK10213        156 ALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLP  199 (394)
T ss_pred             HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence            99999999998888889999999987766654433 33467654

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.88  E-value=1.5e-19  Score=176.97  Aligned_cols=315  Identities=13%  Similarity=0.131  Sum_probs=177.9

Q ss_pred             hHhhhcchHHHH-HHHHHHHHHHHHHhhcccHHHHHHHHHHHH-hcCCCchhhhhhhhhccCCCcc--hhHHHHHHHHHH
Q 013910           24 YFIFAFSRMSIL-GGALVTFVAGLLSAFSPNYISLLILRGLAG-AGLGSGHVFFSWFMEFVPPSNR--GKWMVVFSTFWT   99 (434)
Q Consensus        24 ~~~~~GRr~~l~-~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G-ig~g~~~~~~~~~~E~~p~~~R--g~~~~~~~~~~~   99 (434)
                      +.||+|||+.++ .+.+...++..+.++++++..+++.+.+.| .+....+....+..|+.|++.|  +...+..+.+.+
T Consensus        74 ~~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (393)
T PRK15011         74 RSDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVS  153 (393)
T ss_pred             HHhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHH
Confidence            499999998754 555666677777788999998776655544 4432233444566677777666  345578888999


Q ss_pred             HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH-HHHhcCCChhHHhhcCChHHHHHHHHHHHHHcCCCCCCCCccCC
Q 013910          100 FGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLI-FIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSD  178 (434)
Q Consensus       100 ~G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~-~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~  178 (434)
                      +|.+++++++..+.+..|||..|.+.++..++..+ .+.++||+|+-   + +.                          
T Consensus       154 lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~-~~--------------------------  203 (393)
T PRK15011        154 LAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMRKE---L-PL--------------------------  203 (393)
T ss_pred             HHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccCCC---C-cc--------------------------
Confidence            99999999999888888999999998877666544 45567876530   0 00                          


Q ss_pred             CCCCCcccccCCCCccccccccccccccccccchhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCc
Q 013910          179 GTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSS  258 (434)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (434)
                      .    ++     +.+.     .+     +++         ++.+.........+..    ++....+.+.+..+.     
T Consensus       204 ~----~~-----~~~~-----~~-----~~~---------~~~~~~~~~~~~~~~~----~~~~~~~~p~~l~~~-----  246 (393)
T PRK15011        204 A----TG-----TLEA-----PR-----RNR---------RDTLLLFVICTLMWGT----NSLYIINMPLFIINE-----  246 (393)
T ss_pred             c----cc-----cccc-----cc-----ccc---------ccHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH-----
Confidence            0    00     0000     00     000         0001111111111111    111111122111100     


Q ss_pred             ccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhh
Q 013910          259 SILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMG  338 (434)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (434)
                           .+.+...............+++.+++++++||+|||+.+..+.....+.........+.+...............
T Consensus       247 -----~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~  321 (393)
T PRK15011        247 -----LHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGI  321 (393)
T ss_pred             -----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence                 001111111112233355677889999999999999877665544443332222222222211111111111111


Q ss_pred             hhhhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhccccc
Q 013910          339 TFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFET  412 (434)
Q Consensus       339 ~~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~et  412 (434)
                      ..+....+..|.+|++ |+++.++.+...++|+.++|.+.+.+.+..+....+.+.+++++++.+..++. ||+
T Consensus       322 ~~~~~~~~~~~~~p~~-~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~  393 (393)
T PRK15011        322 LGGIGMLYFQDLMPGQ-AGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRI-KDV  393 (393)
T ss_pred             HHHHHHHHHHHhCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh-cCC
Confidence            1233455678999976 99999999999999999999999988886665555555566666665555554 453

>PRK10504 putative transporter; Provisional

Probab=99.88  E-value=1.9e-19  Score=180.53  Aligned_cols=340  Identities=13%  Similarity=0.091  Sum_probs=192.3

Q ss_pred             hhhhhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHHHHHHH
Q 013910           20 LEPLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFW   98 (434)
Q Consensus        20 ~~~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~   98 (434)
                      +.+++.||+|||+.+..+..+..++.++.++++++..++++|+++|++.|... ....++.|+.|+++|+...++.....
T Consensus        64 ~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (471)
T PRK10504         64 ASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPG  143 (471)
T ss_pred             HHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence            34468999999999999999999998888999999999999999999988753 45567789999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH-HHhcCCChhHHhhcCChHHHHHHHHHHHH------HcCCCCC
Q 013910           99 TFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIF-IVFMPESPRYLCTKGRITDAHNILDKIAQ------FNQTSLP  171 (434)
Q Consensus        99 ~~G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~~-~~~lpESp~~l~~~~~~~~a~~~l~~~~~------~~~~~~~  171 (434)
                      .+|..+++.++..+.+..+||+.|.+......+..+. ....||++.   ++.|.+.+.........      ..+.+  
T Consensus       144 ~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~--  218 (471)
T PRK10504        144 QVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYTM---QTRRFDLSGFLLLAVGMATLTLALDGSK--  218 (471)
T ss_pred             HHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCccc---cCCCCChHHHHHHHHHHHHHHHHHhcCC--
Confidence            9999999999988888889999999887665554433 344565542   22333333222111100      00000  


Q ss_pred             CCCccCCCCCCCcccccCC-CCcc--ccccccccccccccccchhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013910          172 SGNLTSDGTNDLDEEFSTS-EETP--LLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASE  248 (434)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  248 (434)
                      ..     ..........-. ....  .....+++   .+++..+.+.+.+++++..........+......+...++...
T Consensus       219 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  290 (471)
T PRK10504        219 GL-----GLSPLAIAGLVAVGVVALLLYLLHARN---NNRALFSLKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQI  290 (471)
T ss_pred             cC-----CcchHHHHHHHHHHHHHHHHHHHHHhc---CCCCccCHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            00     000000000000 0000  00000000   0001111222222333222211122222211111112222111


Q ss_pred             hhcccCCCCcccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhh--hhhHH-H
Q 013910          249 LSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTL--QSNIL-L  325 (434)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~--~~~~~-~  325 (434)
                      ..              +.+............+..+++..+.+.+.||+|||+.+..+..+..+....+...  ..... .
T Consensus       291 ~~--------------g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (471)
T PRK10504        291 GL--------------GFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLL  356 (471)
T ss_pred             Hc--------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHH
Confidence            11              0111111122233344556666788999999999999887766555543333321  11111 1


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhhhcc
Q 013910          326 TALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH  386 (434)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g  386 (434)
                      ..............++.......+.+|.+.|+++.|+.+...++|..+++.+.+.+.+..+
T Consensus       357 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g  417 (471)
T PRK10504        357 PFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFG  417 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            1111111112222345566777889999999999999999999999999988887766443

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.87  E-value=1.3e-20  Score=181.04  Aligned_cols=293  Identities=25%  Similarity=0.343  Sum_probs=180.8

Q ss_pred             hhhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCc-hhhhhhhhhccCCCcchhHHHHHHHHHHH
Q 013910           22 PLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTF  100 (434)
Q Consensus        22 ~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~  100 (434)
                      +.+.||+|||+.+..+.++..++..+..+++|+..+++.|++.|++.+.. .....++.|+.|+++|++..+..+....+
T Consensus        53 g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  132 (352)
T PF07690_consen   53 GYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSL  132 (352)
T ss_dssp             HHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhh
Confidence            46899999999999999999999666667677779999999999998765 45567889999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH-HHhcCCChhHHhhcCChHHHHHHHHHHHHHcCCCCCCCCccCCC
Q 013910          101 GSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIF-IVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDG  179 (434)
Q Consensus       101 G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~~-~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~  179 (434)
                      |.++++.++..+.+..+||+.|++.++..++..+. ..+++|+|.....+.                             
T Consensus       133 g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~-----------------------------  183 (352)
T PF07690_consen  133 GSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEPPPPRERES-----------------------------  183 (352)
T ss_dssp             HHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT--S-----------------------------
T ss_pred             hhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhccccccccc-----------------------------
Confidence            99999999998888889999999998888877553 345555543100000                             


Q ss_pred             CCCCcccccCCCCccccccccccccccccccch-hhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCc
Q 013910          180 TNDLDEEFSTSEETPLLSSARKRTTVRKSGFSS-FLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSS  258 (434)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (434)
                        +.+++          + ..      ++++.+ ++.+++++...   ......+...+.++....+.+.+....     
T Consensus       184 --~~~~~----------~-~~------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~-----  236 (352)
T PF07690_consen  184 --PKESE----------S-KK------PKPLKPGFKSLFKNPVLW---ILLIAFFLFFFVFSGFSFFLPLYLQEV-----  236 (352)
T ss_dssp             --STTTT-------------H------HHCCCH-CTHHHHHHCCH---HHHHHHHHHHHHHHHHHHHHHHHCCHH-----
T ss_pred             --ccccc----------c-cc------ccccccccccccccchhh---hhhhhhhHHHHHHHHhhcccchhhhhc-----
Confidence              00000          0 00      000011 11222111111   111111222222333333333321100     


Q ss_pred             ccccccCcc-chhHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHh---hhhhHHHHHHHHHHHH
Q 013910          259 SILLSENVQ-DASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT---LQSNILLTALLSGARM  334 (434)
Q Consensus       259 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  334 (434)
                           .+.+ .........+..+.++++.++.+.++||+++|+..........+....+..   ..+..+.........+
T Consensus       237 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  311 (352)
T PF07690_consen  237 -----LGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGF  311 (352)
T ss_dssp             -----HHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHH
T ss_pred             -----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence                 0111 112222234455666777899999999999877666554444443333322   1122222222222222


Q ss_pred             HHhhhhhhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHH
Q 013910          335 FSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCP  375 (434)
Q Consensus       335 ~~~~~~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p  375 (434)
                      +.....+....+..|.+|++.|+++.|+.+....+++.++|
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  312 GFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            23334667788999999999999999999999999998887

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.87  E-value=7.9e-19  Score=172.67  Aligned_cols=123  Identities=18%  Similarity=0.152  Sum_probs=103.7

Q ss_pred             hhhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCc-hhhhhhhhhccCCCcchhHHHHHHHHHHH
Q 013910           22 PLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTF  100 (434)
Q Consensus        22 ~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~  100 (434)
                      ..+.||+|||+.+..+.....++.++..+++++..+++.|+++|++.+.. .....++.|..|+++|++..++......+
T Consensus        69 G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  148 (406)
T PRK15402         69 GPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALL  148 (406)
T ss_pred             HHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999988764 34556788999999999999988888888


Q ss_pred             HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH-HHHhcCCChh
Q 013910          101 GSVSEAALAWIVMPILTWRWLLALSAIPAFVLLI-FIVFMPESPR  144 (434)
Q Consensus       101 G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~-~~~~lpESp~  144 (434)
                      |..+++.++..+.+..+||+.|++.++..++..+ ..+.+||+++
T Consensus       149 ~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (406)
T PRK15402        149 APLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAG  193 (406)
T ss_pred             HHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence            8899998888777778999999988877766544 3445677653

>TIGR00897 2A0118 polyol permease family

Probab=99.87  E-value=5.2e-19  Score=173.70  Aligned_cols=318  Identities=14%  Similarity=0.125  Sum_probs=183.7

Q ss_pred             hhhHhhhcchHHHHHHHHHHHHHHHHH---hh-cccHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHHHHH
Q 013910           22 PLYFIFAFSRMSILGGALVTFVAGLLS---AF-SPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFST   96 (434)
Q Consensus        22 ~~~~~~~GRr~~l~~~~~~~~i~~~~~---~~-~~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~   96 (434)
                      ..+.||+|||+.+..+..++.+++++.   ++ .+|+..+++.|++.|+|.+... ....++.|..|+++||++.++.+.
T Consensus        69 g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~  148 (402)
T TIGR00897        69 GVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWA  148 (402)
T ss_pred             HHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            469999999999999999998887654   23 3588899999999999876543 344567899999999999999999


Q ss_pred             HHHHHH-HHHHHHHHHHhcccchHHHHHHHHHHHHHHH-HHHHhcCCChhHHhhcCChHHHHHHHHHHHHHcCCCCCCCC
Q 013910           97 FWTFGS-VSEAALAWIVMPILTWRWLLALSAIPAFVLL-IFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGN  174 (434)
Q Consensus        97 ~~~~G~-~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~-~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~  174 (434)
                      +..+|. ++++.++..+.+..+|+..++......++.. +..+..+|.|+    +++.                      
T Consensus       149 ~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~----------------------  202 (402)
T TIGR00897       149 VYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALFSNKDIFT----PQHM----------------------  202 (402)
T ss_pred             HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhccCCCCC----cccc----------------------
Confidence            999997 5788877776677786555443322222222 22223333211    0000                      


Q ss_pred             ccCCCCCCCcccccCCCCccccccccccccccccccchhhhccC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 013910          175 LTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFS-PRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQ  253 (434)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (434)
                               ++   +.+.++    .       +   +..+..++ ++.+    ......+.+...+++...+.+.+..+.
T Consensus       203 ---------~~---~~~~~~----~-------~---~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~p~~~~~~  252 (402)
T TIGR00897       203 ---------QT---REKFSE----L-------G---KAATILFTNPNVL----LGGMVRIINTIGLFGFAVFLPMFVAEL  252 (402)
T ss_pred             ---------cC---Ccchhh----H-------H---HHHHHHHcChhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence                     00   000000    0       0   01112222 2221    122223334444455444444333211


Q ss_pred             CCCCcccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHH-HHHHHHHHHHHHHHh-----hhhhHHHHH
Q 013910          254 SKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMT-IMFIFVCIFLLPLVT-----LQSNILLTA  327 (434)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~  327 (434)
                                 +.+............++++++.++.++++||++||+... .+.....+....+..     ..+.+....
T Consensus       253 -----------g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~  321 (402)
T TIGR00897       253 -----------GFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALI  321 (402)
T ss_pred             -----------CCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHH
Confidence                       011111112223345678899999999999999887653 222222222111111     111111111


Q ss_pred             HHHHHHHHHhhhhhhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHh
Q 013910          328 LLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILL  407 (434)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~  407 (434)
                      .......+..+. ........|..|+ .|+++.|+.+....+++.++|.+.+.+.+..|....+.+.+++.+++.+...|
T Consensus       322 ~~~~~G~~~~~~-~~~~~~~~~~~~~-~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~  399 (402)
T TIGR00897       322 IAIALGIFLAGY-VPLAAVFPTLAPK-HKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF  399 (402)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHhhCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence            111111111122 2233445677665 79999999999999999999999999998877677777777777777776666


Q ss_pred             c
Q 013910          408 I  408 (434)
Q Consensus       408 ~  408 (434)
                      +
T Consensus       400 ~  400 (402)
T TIGR00897       400 I  400 (402)
T ss_pred             h
Confidence            4

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.87  E-value=8e-19  Score=171.02  Aligned_cols=122  Identities=17%  Similarity=0.232  Sum_probs=105.6

Q ss_pred             hhhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHHHHHHHHH
Q 013910           22 PLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTF  100 (434)
Q Consensus        22 ~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~  100 (434)
                      ..+.||+|||+.+..+.++..++.+..++++++..+++.|++.|++.+... ....++.|+.|+++|++..+..+....+
T Consensus        61 g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (385)
T TIGR00710        61 GPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLAL  140 (385)
T ss_pred             hhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence            468999999999999999999999999999999999999999999988754 4566788999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH-HHHhcCCCh
Q 013910          101 GSVSEAALAWIVMPILTWRWLLALSAIPAFVLLI-FIVFMPESP  143 (434)
Q Consensus       101 G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~-~~~~lpESp  143 (434)
                      |..+++.++..+.+..+||+.|.+.++..++..+ ..+..||++
T Consensus       141 g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (385)
T TIGR00710       141 APAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETL  184 (385)
T ss_pred             HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            9999999988887788999999988777666544 344567754

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.87  E-value=2.1e-19  Score=181.09  Aligned_cols=332  Identities=13%  Similarity=0.082  Sum_probs=189.5

Q ss_pred             hhhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCch-hhhhhhhh-ccCCCcchhHHHHHHHHHH
Q 013910           22 PLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFME-FVPPSNRGKWMVVFSTFWT   99 (434)
Q Consensus        22 ~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E-~~p~~~Rg~~~~~~~~~~~   99 (434)
                      ..+.||+|||+.+..+..++.++++++++++|+.+++++|+++|+|.+... .....+.+ +.|+++|++..+++.....
T Consensus        62 G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~  141 (495)
T PRK14995         62 GALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGS  141 (495)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            368999999999999999999999999999999999999999999887643 33334444 4578999999999999999


Q ss_pred             HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH-HHHHhcCCChhHHhhcCChHHHHHHHHH------HHHHcCCCCCC
Q 013910          100 FGSVSEAALAWIVMPILTWRWLLALSAIPAFVLL-IFIVFMPESPRYLCTKGRITDAHNILDK------IAQFNQTSLPS  172 (434)
Q Consensus       100 ~G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~-~~~~~lpESp~~l~~~~~~~~a~~~l~~------~~~~~~~~~~~  172 (434)
                      +|..+++.++..+.++.+|||.|++.....++.. +..+++||+|+-.  +++.|.....+..      ........   
T Consensus       142 ~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~--~~~~d~~g~~~~~~~~~~l~~~~~~~~---  216 (495)
T PRK14995        142 GGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRR--DQPLNLGHALMLIVAILLLVYSAKTAL---  216 (495)
T ss_pred             HHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCC--CCCCChHhHHHHHHHHHHHHHHHHhcc---
Confidence            9999999999999899999999998876655543 3456688876421  1112211111000      00000000   


Q ss_pred             CCccCCCCCCCcccccCCCCccc-------cccccccccccccccchhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 013910          173 GNLTSDGTNDLDEEFSTSEETPL-------LSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLL  245 (434)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  245 (434)
                                 +...........       .......+...+.+..++. +++.+......   ...+.....+++...+
T Consensus       217 -----------~~~~~~~~~~~~~~~~~~~l~~f~~~e~~~~~p~~~~~-lf~~~~~~~~~---~~~~~~~~~~~~~~~~  281 (495)
T PRK14995        217 -----------KGFLSLWVTSLTLLTGALLLGLFIRTQLAASRPMIDMR-LFTHRIILSGV---VMAMTAMITLVGFELL  281 (495)
T ss_pred             -----------ccCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHH-HhCCcccHHHH---HHHHHHHHHHHHHHHH
Confidence                       000000000000       0000000000111222222 23222221111   1111222223333322


Q ss_pred             HHhhhcccCCCCcccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhh--hhhH
Q 013910          246 ASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTL--QSNI  323 (434)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~--~~~~  323 (434)
                      .+......          .+.+............+...++..+.|.+.||+|||+.+..+..+..+....+...  ..+.
T Consensus       282 ~~~~lq~v----------~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~  351 (495)
T PRK14995        282 MAQELQFV----------HGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQ  351 (495)
T ss_pred             HHHHHHHH----------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCch
Confidence            22221100          00111111223334456677888999999999999998877766555443332221  1112


Q ss_pred             H-HHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhh
Q 013910          324 L-LTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVT  383 (434)
Q Consensus       324 ~-~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~  383 (434)
                      + .........+..............+..|.+.++.+.++.+....+|+.+++.+.+.+.+
T Consensus       352 ~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        352 WQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1 11111111111112234455566788999999999999999999999888888776654

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.86  E-value=3.6e-19  Score=174.02  Aligned_cols=309  Identities=15%  Similarity=0.167  Sum_probs=186.8

Q ss_pred             hhhHhhhcchHHHHHHHHHHHHHHHHHhhc-----ccHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHHHH
Q 013910           22 PLYFIFAFSRMSILGGALVTFVAGLLSAFS-----PNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFS   95 (434)
Q Consensus        22 ~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~-----~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~   95 (434)
                      ..+.||+|.|+.+.++.+++++.++..+++     +|+.++++.|++.|++ |... +....+++++|+++||++.++..
T Consensus        91 G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~  169 (462)
T PRK15034         91 SFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGING  169 (462)
T ss_pred             HHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHH
Confidence            368999999999999999999999999887     8999999999999998 4443 45567899999999999999997


Q ss_pred             HHHHHHHHHHHHHHHHHh------------------cccchHHHHHHHHHHHHHHHHHH-HhcCCChhHHhhcCChHHHH
Q 013910           96 TFWTFGSVSEAALAWIVM------------------PILTWRWLLALSAIPAFVLLIFI-VFMPESPRYLCTKGRITDAH  156 (434)
Q Consensus        96 ~~~~~G~~l~~~l~~~~~------------------~~~~Wr~~f~~~~i~~~l~~~~~-~~lpESp~~l~~~~~~~~a~  156 (434)
                      ...++|..+++.+...+.                  +..+||...++-.++.++..+.. +.++|.|.   .|.+.    
T Consensus       170 g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~---~~~~~----  242 (462)
T PRK15034        170 GLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS---SRASI----  242 (462)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc---cccCH----
Confidence            666666655544432211                  13358888887776666554443 33433221   00000    


Q ss_pred             HHHHHHHHHcCCCCCCCCccCCCCCCCcccccCCCCccccccccccccccccccchhhhccCcchHHHHHHHHHHHHHHH
Q 013910          157 NILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNS  236 (434)
Q Consensus       157 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  236 (434)
                         +                                                  .....+.+++.+    ++..++++..
T Consensus       243 ---~--------------------------------------------------~~~~vlk~~~~W----llslly~~tF  265 (462)
T PRK15034        243 ---A--------------------------------------------------DQLPVLQRLHLW----LLSLLYLATF  265 (462)
T ss_pred             ---H--------------------------------------------------HHHHHhCCCchh----HHHHHHHHHH
Confidence               0                                                  001111122222    2333333333


Q ss_pred             HHHHHHHHHHHhhhcccCCCCcccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHH
Q 013910          237 FVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPL  316 (434)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~  316 (434)
                      -.|.++..+.+.+....            ..........++..+.+.++..++|+++||+|+|+.+..+.+...+.....
T Consensus       266 G~fvg~s~~lp~~~~~~------------~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~  333 (462)
T PRK15034        266 GSFIGFSAGFAMLAKTQ------------FPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALL  333 (462)
T ss_pred             HHHHHHHHHHHHHHHHH------------cChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence            33333333333332110            001111222334456677788899999999999998887776555443322


Q ss_pred             H--hhh----hhHHHHHHHHHHHHHHhhh-hhhhhhhcccccCC---------------------CchhhHHhHHHHhhh
Q 013910          317 V--TLQ----SNILLTALLSGARMFSMGT-FIIANIFAPEIYPT---------------------SMRSTGAGVAYAVGR  368 (434)
Q Consensus       317 ~--~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~El~P~---------------------~~R~~a~gi~~~~~~  368 (434)
                      .  ...    +-...... +...+...|. ....+-+.+..||+                     +.-+.+.|+..+.+.
T Consensus       334 ~l~lp~~~~~~~~~~~~~-~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~  412 (462)
T PRK15034        334 FLTLPGTGSGNFIAFYAV-FMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGA  412 (462)
T ss_pred             HHHhccccccHHHHHHHH-HHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHH
Confidence            2  111    11111111 1111122222 34566677788874                     135678899999999


Q ss_pred             HhHhhHHHHHHHHhhhcchh-hHHHHHHHHHHHHHHHHHhc
Q 013910          369 IGGMVCPLVAVGLVTSCHQT-AAILLLEALIVLSVVVILLI  408 (434)
Q Consensus       369 ig~~~~p~~~~~l~~~~g~~-~~~~~~~~~~~i~~~~~~~~  408 (434)
                      +|+++.|.+++...+.+|.+ ..+..+.+..+++.++.+.+
T Consensus       413 ~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~  453 (462)
T PRK15034        413 VGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLV  453 (462)
T ss_pred             cccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999888776653 45566666666666555543

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.86  E-value=1.3e-18  Score=169.29  Aligned_cols=122  Identities=18%  Similarity=0.259  Sum_probs=105.3

Q ss_pred             hhhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHHHHHHHHH
Q 013910           22 PLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTF  100 (434)
Q Consensus        22 ~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~  100 (434)
                      ..+.||+|||+.+..+..+..++..+..+++++..+++.|++.|++.+... ....++.|+.|+++|++..++.+....+
T Consensus        47 g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (377)
T PRK11102         47 GPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTI  126 (377)
T ss_pred             chHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            368999999999999999999999999999999999999999999887653 4556788999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH-HHHHhcCCCh
Q 013910          101 GSVSEAALAWIVMPILTWRWLLALSAIPAFVLL-IFIVFMPESP  143 (434)
Q Consensus       101 G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~-~~~~~lpESp  143 (434)
                      |..+++.++..+.+..+||+.|.+.++..++.. +..+++||++
T Consensus       127 g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (377)
T PRK11102        127 APLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPETL  170 (377)
T ss_pred             HHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence            999999988887777899999998877766654 3455677764

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.86  E-value=1.2e-19  Score=180.84  Aligned_cols=335  Identities=12%  Similarity=0.077  Sum_probs=186.9

Q ss_pred             hhhhhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHH-HHHHHHhcCCCc-hhhhhhhhhccCCCcchhHHHHHHHH
Q 013910           20 LEPLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLI-LRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTF   97 (434)
Q Consensus        20 ~~~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~-~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~   97 (434)
                      +..++.||+|||+.++.+.++..++.+++++++++..+++ .|++.|++.|.. .....++.|+.| ++|++..++.+.+
T Consensus        73 ~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~  151 (455)
T TIGR00892        73 ISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAG  151 (455)
T ss_pred             HHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhc
Confidence            3457999999999999999999999999999999998875 579999998864 344456678885 7899999999999


Q ss_pred             HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHh-cCCChhHHhhcCChHHHHHHHHHHHHHcCCCCCCCCcc
Q 013910           98 WTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVF-MPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLT  176 (434)
Q Consensus        98 ~~~G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~~~~~-lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~  176 (434)
                      ..+|..+++.+...+.+..+||+.|++.++..++..+..++ .|+.+...  +.+.++ +         +  +.+     
T Consensus       152 ~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~-~---------~--~~~-----  212 (455)
T TIGR00892       152 SPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMRPVGPSQR--VSKSKS-K---------E--GLP-----  212 (455)
T ss_pred             ccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCCCCcccc--cccccc-c---------c--cCC-----
Confidence            99999999988887777889999999998877655444333 33322100  000000 0         0  000     


Q ss_pred             CCCCCCCcccccCCCCccccccccccccccccccchhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q 013910          177 SDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKC  256 (434)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (434)
                             ++...+..+.      +...+. ..+...+..+.+++++.    .....+...+.++....+.+.+....   
T Consensus       213 -------~~~~~~~~~~------~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~l~~~~~~~---  271 (455)
T TIGR00892       213 -------PDGSTKKLSK------KSTAEK-INRFLDFSLFTHRGFLV----YLSGNVIMFLGFFAPIIFLVPYAKDK---  271 (455)
T ss_pred             -------CCCccccccc------cchhhh-hhhhcchHHhcCchHHH----HHHHHHHHHHHccchHHHHHHHHHHc---
Confidence                   0000000000      000000 00011112122232221    11111112222222222222222111   


Q ss_pred             CcccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhh--chhHHHHH--HHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 013910          257 SSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRV--GRKLSMTI--MFIFVCIFLLPLVTLQSNILLTALLSGA  332 (434)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~--gRR~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (434)
                              +...........+.++..+++..++++++||.  ++|+....  +.+..++..+......+.+.........
T Consensus       272 --------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~  343 (455)
T TIGR00892       272 --------GVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFF  343 (455)
T ss_pred             --------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence                    01111112223344566777888899999973  33433322  2222222222222222222211111111


Q ss_pred             HHHHhhhhhhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhhhcc-hhhHHHHHHHHHHHHHH
Q 013910          333 RMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH-QTAAILLLEALIVLSVV  403 (434)
Q Consensus       333 ~~~~~~~~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g-~~~~~~~~~~~~~i~~~  403 (434)
                      .+......+..+.+..|.+|++.++++.|+.+....+|++++|.+.+.+.+..+ ....+.+.+++.+++++
T Consensus       344 G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~  415 (455)
T TIGR00892       344 GLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL  415 (455)
T ss_pred             HHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence            112222345567778899999999999999999999999999999998877654 33445555554444444

>PRK11043 putative transporter; Provisional

Probab=99.85  E-value=4.8e-18  Score=166.82  Aligned_cols=123  Identities=12%  Similarity=0.125  Sum_probs=104.0

Q ss_pred             hhhhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHHHHHHHH
Q 013910           21 EPLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWT   99 (434)
Q Consensus        21 ~~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~   99 (434)
                      ...+.||+|||+.+..+..+..++.++.++++++..+++.|+++|++.+... ....++.|+.|+++|++..+.......
T Consensus        61 ~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (401)
T PRK11043         61 WGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVA  140 (401)
T ss_pred             hhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence            3468999999999999999999999999999999999999999999877643 334567899999999999888888888


Q ss_pred             HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcCCCh
Q 013910          100 FGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESP  143 (434)
Q Consensus       100 ~G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~~~~~lpESp  143 (434)
                      +|..+++.++..+.+..+||+.|.+.++..++..+..++++|++
T Consensus       141 ~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (401)
T PRK11043        141 LSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRLKPSK  184 (401)
T ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            89999998888887888999999998887777666555666554

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.85  E-value=1.6e-18  Score=169.50  Aligned_cols=318  Identities=11%  Similarity=0.028  Sum_probs=185.7

Q ss_pred             hhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCc-hhhhhhhhhccCCCcchhHHHHHHHHHHHH
Q 013910           23 LYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFG  101 (434)
Q Consensus        23 ~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G  101 (434)
                      .+.||+|||+++..+..++.+++++.+++++.   ++.|+++|++.+.. ++..+++.|+.|+++|+++.++.+....+|
T Consensus        60 ~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~  136 (393)
T PRK11195         60 AFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAA  136 (393)
T ss_pred             HhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence            49999999999999999999888877776664   78999999998775 455678899999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcCCChhHHhhcCChHHHHHHHHHHHHHcCCCCCCCCccCCCCC
Q 013910          102 SVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTN  181 (434)
Q Consensus       102 ~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~  181 (434)
                      .++++.++..+.+. .|+..+.+.+...++..+....+||+|....  ++.++..+.++..                   
T Consensus       137 ~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~-------------------  194 (393)
T PRK11195        137 ILLGTVLGGALADP-HAEAALAVCALIYLLAALFNLFIPRLGARRP--GQSWNPIALLRDF-------------------  194 (393)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCccccc--ccCCCHHHHHHHH-------------------
Confidence            99999998887653 4888777766555544555667888764210  0000000000000                   


Q ss_pred             CCcccccCCCCccccccccccccccccccchhhhccCcchHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcccCCCCccc
Q 013910          182 DLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTIL-LWVLYFGNSFVYYGIVLLASELSGSQSKCSSSI  260 (434)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (434)
                                        .          ...+.+++.+..+.... ....+.......+....+.+...+         
T Consensus       195 ------------------~----------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg---------  237 (393)
T PRK11195        195 ------------------F----------HACRVLWRDKLGRFSLAGTTLFWGAGATLRFLVLAWAPVALG---------  237 (393)
T ss_pred             ------------------H----------HHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---------
Confidence                              0          00112222222222222 222222222222333233322211         


Q ss_pred             ccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhh
Q 013910          261 LLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTF  340 (434)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (434)
                           .+............++.++|.++.+.+.||.++|+.+..+..+ ++....+....+.+..........++.....
T Consensus       238 -----~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~  311 (393)
T PRK11195        238 -----ITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGILM-GLVVLLMALQHSLLPAYPLLILIGALGGFFV  311 (393)
T ss_pred             -----CChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHhhhhhh
Confidence                 1111112223444567778888888888888888777666433 2222222222222211111111111111112


Q ss_pred             hhhhhhcccccCCCc-hhhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcc
Q 013910          341 IIANIFAPEIYPTSM-RSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIP  409 (434)
Q Consensus       341 ~~~~~~~~El~P~~~-R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~  409 (434)
                      ........|..|++. ++++.++.+....++..++..+... .+..+-...+++.+...+++....+.+.
T Consensus       312 ~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (393)
T PRK11195        312 VPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSL-LVKLGVPVVAVIVGFGLLVALAMALLWR  380 (393)
T ss_pred             hhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            334445567776665 7999999999999998888877764 4555555455555555555555555554

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.84  E-value=8.7e-19  Score=163.99  Aligned_cols=315  Identities=19%  Similarity=0.186  Sum_probs=203.7

Q ss_pred             hhHhhhcchHHHHHHHHHHHHHHHHHhhcccHH---HHHHHHHHHHhcCCCchhhhhhhhhccCCCcchhHHHHHHHHHH
Q 013910           23 LYFIFAFSRMSILGGALVTFVAGLLSAFSPNYI---SLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWT   99 (434)
Q Consensus        23 ~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~---~l~~~R~l~Gig~g~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~   99 (434)
                      .++||+|-|+...++.++..+..+..+++.++.   ++++.+++.|++-|...+..++.++++|||++|.+.+++. .-+
T Consensus        71 ~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN  149 (417)
T COG2223          71 FLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGN  149 (417)
T ss_pred             hhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcccceehcccccccccCChhhhhHHHHHhc-ccc
Confidence            589999999999999999999999998886555   9999999999997766677778899999999999999998 777


Q ss_pred             HHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHHH-HHHHHhcCCChhHHhhcCChHHHHHHHHHHHHHcCCCCCCCCc
Q 013910          100 FGSVSEAALAWIVMPILT---WRWLLALSAIPAFVL-LIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNL  175 (434)
Q Consensus       100 ~G~~l~~~l~~~~~~~~~---Wr~~f~~~~i~~~l~-~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~  175 (434)
                      +|..+...++-.+....+   ||....+-.++.++. +..++.+.|.|+...+++....                     
T Consensus       150 ~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~~---------------------  208 (417)
T COG2223         150 LGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQLP---------------------  208 (417)
T ss_pred             ccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccch---------------------
Confidence            888777776666655556   999888887777765 4455667676653111000000                     


Q ss_pred             cCCCCCCCcccccCCCCccccccccccccccccccchhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 013910          176 TSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSK  255 (434)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (434)
                                                         .+++..++.   +++..+...|+.+.-.+-++..+.+.+..+.- 
T Consensus       209 -----------------------------------~~~~~v~~~---~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~f-  249 (417)
T COG2223         209 -----------------------------------AQLKAVFSN---KDTWLLSLLYFATFGGFVGFSAYLPMYLVTQF-  249 (417)
T ss_pred             -----------------------------------hHHHHHhcC---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence                                               011112211   11223444554444444444444444432211 


Q ss_pred             CCcccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhh-------hhHHHHHH
Q 013910          256 CSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQ-------SNILLTAL  328 (434)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~  328 (434)
                               +.+....-...+...+.+.....++|+++||+|.|+.....+..++++........       +.......
T Consensus       250 ---------g~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  320 (417)
T COG2223         250 ---------GLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAV  320 (417)
T ss_pred             ---------CCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHH
Confidence                     11111111222333344555667799999999988887776666665554443321       11222222


Q ss_pred             HHHHHHHHhhhhhhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhhhcch-hhHHHHHHHHHHHHHHHHHh
Q 013910          329 LSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQ-TAAILLLEALIVLSVVVILL  407 (434)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~-~~~~~~~~~~~~i~~~~~~~  407 (434)
                      .+....+........+-+.+.++|.+ -+...|+..++|.+|++.-|..++...+.+|. ...+.++..+.+++.++.+.
T Consensus       321 ~l~l~~~~G~GnGsvfk~Ip~if~~~-~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~  399 (417)
T COG2223         321 FLALFVFAGLGNGSVFKMIPVIFPKE-TGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWA  399 (417)
T ss_pred             HHHHHHHhccCcchheeechHHHHhh-hhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence            22222222223455677788888774 57889999999999999999999998888874 45666777777777665554


Q ss_pred             c
Q 013910          408 I  408 (434)
Q Consensus       408 ~  408 (434)
                      .
T Consensus       400 ~  400 (417)
T COG2223         400 L  400 (417)
T ss_pred             H
Confidence            4

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.84  E-value=5.3e-18  Score=165.33  Aligned_cols=307  Identities=16%  Similarity=0.110  Sum_probs=179.0

Q ss_pred             hhhhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHHHHHHHH
Q 013910           21 EPLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWT   99 (434)
Q Consensus        21 ~~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~   99 (434)
                      .+.+.||+|||+.+..+.++..++.++.++++|+..++++|+++|++.+... +...++.+..|+++||+..+.++.+..
T Consensus        61 ~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (381)
T PRK03633         61 AGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYY  140 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            3469999999999999999999999999999999999999999999987653 334556788899999999999999999


Q ss_pred             HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHH-hcCCChhHHhhcCChHHHHHHHHHHHHHcCCCCCCCCccCC
Q 013910          100 FGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIV-FMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSD  178 (434)
Q Consensus       100 ~G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~~~~-~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~  178 (434)
                      +|..+++.+...+.+...|...+.. ...........+ ..+|++.                                  
T Consensus       141 ~g~~~g~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----------------------------------  185 (381)
T PRK03633        141 LGTVLGQLLVSKVSTELMSVLPWVT-GLVLAAILPLLFTRILNQQA----------------------------------  185 (381)
T ss_pred             HHHHHHHHHHhcccccccchHHHHH-HHHHHHHHHHHHhcccCCCC----------------------------------
Confidence            9999999988776544323222222 111111111111 1111100                                  


Q ss_pred             CCCCCcccccCCCCccccccccccccccccccchhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCc
Q 013910          179 GTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSS  258 (434)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (434)
                         + ++    . ..               +  ....+.+++.+. .........   +.+.....+.+.+....     
T Consensus       186 ---~-~~----~-~~---------------~--~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~lp~~~~~~-----  230 (381)
T PRK03633        186 ---E-NH----D-ST---------------S--IWPMLKLRQARL-GVNGCIISG---IVLGSLYGLMPLYLNHQ-----  230 (381)
T ss_pred             ---C-CC----C-CC---------------C--HHHHHHhcchHH-HHHHHHHHH---HHHHHHHHHHHHHHHHc-----
Confidence               0 00    0 00               0  000011122221 111111111   11111111122221110     


Q ss_pred             ccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhh
Q 013910          259 SILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMG  338 (434)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (434)
                            +.+............+..+++.+..+++.||+|||+.+..+..+..+....+.. ..... ......+ .....
T Consensus       231 ------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~-~~~~~-~~~~l~g-~~~~~  301 (381)
T PRK03633        231 ------GMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAMLS-QAAMA-PALFILG-AAGFT  301 (381)
T ss_pred             ------CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHhh-hHHHH-HHHHHHH-HHHHh
Confidence                  111111112223444677889999999999999999887665555443332221 11111 1111111 11123


Q ss_pred             hhhhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHH
Q 013910          339 TFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVIL  406 (434)
Q Consensus       339 ~~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~  406 (434)
                      ..+.......|..|++.++.+.+..+....+|+.++|.+.+.+.|..+....+.+.+.+.++..+..+
T Consensus       302 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~  369 (381)
T PRK03633        302 LYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLL  369 (381)
T ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence            34556667789998887777788877778899999999999988877766666666666655544433

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.84  E-value=5.9e-19  Score=170.88  Aligned_cols=124  Identities=18%  Similarity=0.241  Sum_probs=95.9

Q ss_pred             hhhhHhhhcchHHHHHHHHHHHHHHHHHhhcc-cHHHHHHHHHHHHhcCCCchhhhhhhhhccCCCcchhHHHHHHHHHH
Q 013910           21 EPLYFIFAFSRMSILGGALVTFVAGLLSAFSP-NYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWT   99 (434)
Q Consensus        21 ~~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~-~~~~l~~~R~l~Gig~g~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~   99 (434)
                      ...+.||+|||+.+..+.++..++.++.++++ ++..+++.|+++|++.+.......++.|+.|+++|++..++......
T Consensus        57 ~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  136 (366)
T TIGR00886        57 LGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGGSFASCMPWISFFFPKKIQGTALGLAAGWGN  136 (366)
T ss_pred             HHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhchhhHhHHHHHHHhcCHhhhhHHHHHHHHHhH
Confidence            34699999999999999999999999999999 99999999999999855444455678899999999999999987777


Q ss_pred             HHHHHHHHHHHHHhc----------ccchHHHH-HHHHHHHHH-HHHHHHhcCCChh
Q 013910          100 FGSVSEAALAWIVMP----------ILTWRWLL-ALSAIPAFV-LLIFIVFMPESPR  144 (434)
Q Consensus       100 ~G~~l~~~l~~~~~~----------~~~Wr~~f-~~~~i~~~l-~~~~~~~lpESp~  144 (434)
                      +|..+++.++..+..          ..+||+.| ...++...+ ..+.....+|+|+
T Consensus       137 ~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (366)
T TIGR00886       137 MGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTPP  193 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcccCCc
Confidence            777777666544322          34899999 443444333 3444555677764

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.84  E-value=2.5e-18  Score=190.68  Aligned_cols=327  Identities=14%  Similarity=0.015  Sum_probs=186.3

Q ss_pred             hhhHhhhcchHHHHHHHHHHHHHHHHH---hhcccHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHHHHHH
Q 013910           22 PLYFIFAFSRMSILGGALVTFVAGLLS---AFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTF   97 (434)
Q Consensus        22 ~~~~~~~GRr~~l~~~~~~~~i~~~~~---~~~~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~   97 (434)
                      ..+.||+|||++++.+.++.+++.++.   ..++++..++++|+++|++.+... +...++.|++|+++|+++.++.+.+
T Consensus        68 G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~  147 (1146)
T PRK08633         68 GFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAF  147 (1146)
T ss_pred             hhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHH
Confidence            358999999999999887766655443   345789999999999999988754 5567889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcc---------cchHHHHHHHHHHH-HHHHHHHHhcCCChhHHhhcCChHHHHHHHHHHHHHcC
Q 013910           98 WTFGSVSEAALAWIVMPI---------LTWRWLLALSAIPA-FVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQ  167 (434)
Q Consensus        98 ~~~G~~l~~~l~~~~~~~---------~~Wr~~f~~~~i~~-~l~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~  167 (434)
                      ..+|.++++.++.++...         .+|++.+.+..+.. ++.++..+.+||+|.+...++                 
T Consensus       148 ~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------  210 (1146)
T PRK08633        148 TIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVF-----------------  210 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCcccc-----------------
Confidence            999999999998877654         24555555444333 333444566788875311000                 


Q ss_pred             CCCCCCCccCCCCCCCcccccCCCCccccccccccccccccccchhhhccCcchHHHHHH-HHHHHHHHHHH-HHHHHHH
Q 013910          168 TSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTIL-LWVLYFGNSFV-YYGIVLL  245 (434)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~-~~~~~~~  245 (434)
                                       +. .  +...     .      +.....+..+++.+......+ ....++..... .+...++
T Consensus       211 -----------------~~-~--~~~~-----~------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (1146)
T PRK08633        211 -----------------DK-K--KYLF-----P------KLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYA  259 (1146)
T ss_pred             -----------------cc-c--cccc-----H------HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence                             00 0  0000     0      000012223333333222222 12222211111 1111111


Q ss_pred             HHhhhcccCCCCcccccccCccch-hHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHH
Q 013910          246 ASELSGSQSKCSSSILLSENVQDA-SVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNIL  324 (434)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~  324 (434)
                      ...+.               .+.. ..........++.++|.++++++.||.++|+.+.++.++.++.++.+....+.+.
T Consensus       260 ~~~~g---------------~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (1146)
T PRK08633        260 KEVLG---------------LDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLAS  324 (1146)
T ss_pred             HHHhC---------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHH
Confidence            11111               1111 1122233445667888999999999999888777666555544443333222222


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhhhc-chhhHHHHHHHHHHHHHH
Q 013910          325 LTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSC-HQTAAILLLEALIVLSVV  403 (434)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~-g~~~~~~~~~~~~~i~~~  403 (434)
                      ..+..+...++..........+..|..|++.|++++|+.+.+..+++++++.+...+.... +....+++.+.++++..+
T Consensus       325 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  404 (1146)
T PRK08633        325 VLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLIGTL  404 (1146)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence            2121111112222234456778889999999999999999999988877776655433211 122233344444444444


Q ss_pred             HHHhcccc
Q 013910          404 VILLIPFE  411 (434)
Q Consensus       404 ~~~~~~~e  411 (434)
                      ..+...|+
T Consensus       405 ~~~~~~~~  412 (1146)
T PRK08633        405 YTLLLLPD  412 (1146)
T ss_pred             HHHHHhHH
Confidence            44333343

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.84  E-value=4.9e-19  Score=174.10  Aligned_cols=331  Identities=19%  Similarity=0.283  Sum_probs=203.2

Q ss_pred             hhHhhhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHHHHHHHH
Q 013910           23 LYFIFAFSRMSILGGALVTFVAGLLSAFSP--NYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWT   99 (434)
Q Consensus        23 ~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~--~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~   99 (434)
                      .+.||+|-|+++..+.+++++.++++-.+.  ++..+++.|+++|++.|... +.....+.|+|++||++..++...+..
T Consensus        95 ~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q  174 (466)
T KOG2532|consen   95 YLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQ  174 (466)
T ss_pred             HHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHH
Confidence            588999999999999999999999986654  45588999999999999864 555677899999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHHHHHHH-hcCCChhHHhhcCChHHHHHHHHHHHHHcCCCCCCCCccC
Q 013910          100 FGSVSEAALAWIVMPI-LTWRWLLALSAIPAFVLLIFIV-FMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTS  177 (434)
Q Consensus       100 ~G~~l~~~l~~~~~~~-~~Wr~~f~~~~i~~~l~~~~~~-~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~  177 (434)
                      +|.+++.++++.+.+. .||++.|++.++.+++..++++ +.-|+|+-   +.+..+.  .++++.+...          
T Consensus       175 ~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~---h~~is~~--El~~I~~~k~----------  239 (466)
T KOG2532|consen  175 LGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK---HPNISEK--ELKYIEKGKS----------  239 (466)
T ss_pred             HHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCccc---CCCCCHH--HHHHHHhccc----------
Confidence            9999999998888776 8999999999999998866654 46688862   1111111  1222211000          


Q ss_pred             CCCCCCcccccCCCCccccccccccccccccccchhhhccC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q 013910          178 DGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFS-PRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKC  256 (434)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (434)
                            ++               +.++..+   .+++.+++ +..+    ..+...++....++.+..+.|.+..+-   
T Consensus       240 ------~~---------------~~~~~~~---vP~~~i~ts~~vw----ai~~~~f~~~~~~~~l~~y~PtY~~~V---  288 (466)
T KOG2532|consen  240 ------EA---------------HVKKKPP---VPYKAILTSPPVW----AIWISAFGGNWGFYLLLTYLPTYLKEV---  288 (466)
T ss_pred             ------cc---------------ccCCCCC---CCHHHHHcCHHHH----HHHHHHHHHHHHHHHHHHHhhHHHHHH---
Confidence                  00               0000001   12333332 3322    233444444444444444444433210   


Q ss_pred             CcccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchh--------HHH-HHHHHHHHHHHHHHHhhh--hhHHH
Q 013910          257 SSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRK--------LSM-TIMFIFVCIFLLPLVTLQ--SNILL  325 (434)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR--------~~~-~~~~~~~~~~~~~~~~~~--~~~~~  325 (434)
                           +..+.  ........+..+.+.+..+++|.++||+.+|        +.+ .++....+++++.+.+..  +.+..
T Consensus       289 -----L~f~v--~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a  361 (466)
T KOG2532|consen  289 -----LGFDV--RETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLA  361 (466)
T ss_pred             -----hCCCh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHH
Confidence                 00011  1112233455667778889999999998663        222 344555555555554433  22223


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhccccc-CCCchhhHHhHHHHhhhHhHhhHHHHHHHHhh-hc--chhhHHHHHHHHHHHH
Q 013910          326 TALLSGARMFSMGTFIIANIFAPEIY-PTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVT-SC--HQTAAILLLEALIVLS  401 (434)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~El~-P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~-~~--g~~~~~~~~~~~~~i~  401 (434)
                      ..++..+. ...|.. ....+.+-.- -++.-+..+|+++.++.+.++++|.+.+.+.. .+  .....+++.+++.+++
T Consensus       362 ~~~l~~~~-~~~g~~-~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~  439 (466)
T KOG2532|consen  362 VILLTIAI-GLSGFN-ISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVG  439 (466)
T ss_pred             HHHHHHHH-HHcccc-hhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHh
Confidence            22222221 122222 2222222222 56678999999999999999999999987773 21  1234556666666666


Q ss_pred             HHHHHhc
Q 013910          402 VVVILLI  408 (434)
Q Consensus       402 ~~~~~~~  408 (434)
                      .++..++
T Consensus       440 ~i~f~~f  446 (466)
T KOG2532|consen  440 NIIFLFF  446 (466)
T ss_pred             chheeEe
Confidence            6444444

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.83  E-value=1.2e-17  Score=163.69  Aligned_cols=119  Identities=16%  Similarity=0.087  Sum_probs=101.2

Q ss_pred             hhhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCc-hhhhhhhhhccCCCcchhHHHHHHHHHHH
Q 013910           22 PLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTF  100 (434)
Q Consensus        22 ~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~  100 (434)
                      ..+.||+|||+.+..+.++..++.++..+++++..+++.|+++|++.+.. +....++.|++|+++||+..++.+....+
T Consensus        67 G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  146 (400)
T PRK11646         67 GAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSA  146 (400)
T ss_pred             hHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            36899999999999999999999999999999999999999999987654 34456788999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH-HHHhcCC
Q 013910          101 GSVSEAALAWIVMPILTWRWLLALSAIPAFVLLI-FIVFMPE  141 (434)
Q Consensus       101 G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~-~~~~lpE  141 (434)
                      |..+++.++..+. ..+||+.|++.++..++..+ ..+.+||
T Consensus       147 g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~  187 (400)
T PRK11646        147 GAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPA  187 (400)
T ss_pred             HHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            9999999988877 67999999988776665433 3344555

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.83  E-value=1.6e-17  Score=163.20  Aligned_cols=292  Identities=15%  Similarity=0.139  Sum_probs=182.9

Q ss_pred             hhhhHhhhcchHHHHHHHHHHHHHHHHHhh---cccHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHHHHH
Q 013910           21 EPLYFIFAFSRMSILGGALVTFVAGLLSAF---SPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFST   96 (434)
Q Consensus        21 ~~~~~~~~GRr~~l~~~~~~~~i~~~~~~~---~~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~   96 (434)
                      .+++.||+|||+++..+..+++++.++...   .+|+..+++.|++.|+|.|... ...+++.|..|+++|++..++.+.
T Consensus        58 ~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (410)
T TIGR00885        58 AAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQS  137 (410)
T ss_pred             HHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHH
Confidence            447999999999999999999998877543   4689999999999999998764 456688899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhc--------------------------ccchHHHHHHHHHHHHHHHHHHHh--cCCChhHHhh
Q 013910           97 FWTFGSVSEAALAWIVMP--------------------------ILTWRWLLALSAIPAFVLLIFIVF--MPESPRYLCT  148 (434)
Q Consensus        97 ~~~~G~~l~~~l~~~~~~--------------------------~~~Wr~~f~~~~i~~~l~~~~~~~--lpESp~~l~~  148 (434)
                      ...+|..+++.+...+..                          ..+||++|.+.++..++..+...+  +||.++    
T Consensus       138 ~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~----  213 (410)
T TIGR00885       138 FNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH----  213 (410)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc----
Confidence            999999999988765421                          136999999887766655443322  333211    


Q ss_pred             cCChHHHHHHHHHHHHHcCCCCCCCCccCCCCCCCcccccCCCCccccccccccccccccccchhhhccCcchHHHHHHH
Q 013910          149 KGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILL  228 (434)
Q Consensus       149 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  228 (434)
                          ++                           + ++  .+..                   ...+..++++......+.
T Consensus       214 ----~~---------------------------~-~~--~~~~-------------------~~~~~~~~~~~~~~~~l~  240 (410)
T TIGR00885       214 ----SD---------------------------A-KQ--ISFS-------------------ASLSRLARIRHYREGVIA  240 (410)
T ss_pred             ----cc---------------------------c-cc--ccch-------------------hhHHHHHhChhHHHHHHH
Confidence                00                           0 00  0000                   000011111111112222


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHH
Q 013910          229 WVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIF  308 (434)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~  308 (434)
                      .+.+.+.....+   .+.+.+.....  .     .........+....  .....+|.++++++.||+++|+.+.++...
T Consensus       241 ~f~yvg~e~~~~---s~l~~y~~~~~--~-----~~~~~~a~~~~~~~--~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~  308 (410)
T TIGR00885       241 QFFYVGVQIMCW---TFIIQYAVRLI--P-----GMTAGFAANYNIGA--MVIFFISRFIGTWLISYLAAHKVLMAYAII  308 (410)
T ss_pred             HHHHHHHHHHHH---HHHHHHHhhcc--C-----CCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence            222332222222   11111111000  0     00001111122222  244578999999999999999988887777


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhhh
Q 013910          309 VCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTS  384 (434)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~  384 (434)
                      +.+..+......+... ...+....++....++..+....+..+++.+..+.+++.++  +|+.+.|.+.+.+.|.
T Consensus       309 ~~~~~ll~~~~~~~~~-~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~  381 (410)
T TIGR00885       309 GMALCLGSIFAGGHVG-LYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIIDM  381 (410)
T ss_pred             HHHHHHHHHHcCChHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHHHHHHH
Confidence            6665554444332222 22222333455566788999999999998887777777766  9999999999999884

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.83  E-value=2.4e-17  Score=162.30  Aligned_cols=123  Identities=18%  Similarity=0.209  Sum_probs=106.3

Q ss_pred             hhhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHHHHHHHHH
Q 013910           22 PLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTF  100 (434)
Q Consensus        22 ~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~  100 (434)
                      ..++||+|||+.+..+..++.++++++++++|+..++++|+++|++.+... ....+..|+.|+++|++..+.......+
T Consensus        72 G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (413)
T PRK15403         72 GPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLV  151 (413)
T ss_pred             hHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            468999999999999999999999999999999999999999999886543 3445678999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH-HHhcCCChh
Q 013910          101 GSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIF-IVFMPESPR  144 (434)
Q Consensus       101 G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~~-~~~lpESp~  144 (434)
                      |..+++.++..+.+..+||+.|++.++..++..+. .+.+||+++
T Consensus       152 ~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~  196 (413)
T PRK15403        152 APIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVK  196 (413)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence            99999999888877789999999988877766543 456788753

>PRK10133 L-fucose transporter; Provisional

Probab=99.82  E-value=2.5e-17  Score=163.13  Aligned_cols=305  Identities=14%  Similarity=0.081  Sum_probs=174.9

Q ss_pred             hhhhHhhhcchHHHHHHHHHHHHHHHHH---hhcccHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHHHHH
Q 013910           21 EPLYFIFAFSRMSILGGALVTFVAGLLS---AFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFST   96 (434)
Q Consensus        21 ~~~~~~~~GRr~~l~~~~~~~~i~~~~~---~~~~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~   96 (434)
                      ...+.||+|||+++..+..++.++.++.   .+++|+..++++|+++|+|.|... ....++.|+.|+++|+...+..+.
T Consensus        81 ~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~  160 (438)
T PRK10133         81 AGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQT  160 (438)
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHH
Confidence            3468999999999999999999999775   568999999999999999998764 445677788777777778899999


Q ss_pred             HHHHHHHHHHHHHHHHh-c-----------------c--------cchHHHHHH-HHHHHHHHHHH-HHhcCCChhHHhh
Q 013910           97 FWTFGSVSEAALAWIVM-P-----------------I--------LTWRWLLAL-SAIPAFVLLIF-IVFMPESPRYLCT  148 (434)
Q Consensus        97 ~~~~G~~l~~~l~~~~~-~-----------------~--------~~Wr~~f~~-~~i~~~l~~~~-~~~lpESp~~l~~  148 (434)
                      .+.+|..+++.++..+. .                 .        .+||++|.. ..+..++.++. ...+||.|.    
T Consensus       161 ~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~----  236 (438)
T PRK10133        161 FNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS----  236 (438)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc----
Confidence            99999999988765432 0                 0        256666654 33333332222 233444211    


Q ss_pred             cCChHHHHHHHHHHHHHcCCCCCCCCccCCCCCCCcccccCCCCccccccccccccccccccchhhhcc-CcchHHHHHH
Q 013910          149 KGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLF-SPRFFKTTIL  227 (434)
Q Consensus       149 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i  227 (434)
                       ++.                               ++  ++  ..+              ..+..+.++ +++.+... +
T Consensus       237 -~~~-------------------------------~~--~~--~~~--------------~~~~~~~ll~~~~~~~~~-l  265 (438)
T PRK10133        237 -DNH-------------------------------SD--AK--QGS--------------FSASLSRLARIRHWRWAV-L  265 (438)
T ss_pred             -ccc-------------------------------cc--cc--ccc--------------hhhhHHHHHhCchHHHHH-H
Confidence             000                               00  00  000              000111122 22322222 1


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhh-hcccCCCCcccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHH
Q 013910          228 LWVLYFGNSFVYYGIVLLASEL-SGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMF  306 (434)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~  306 (434)
                      ....+..   ..++...+.+.+ ..+.          .+.+............++.++|..+++++.||+|||+.+..+.
T Consensus       266 ~~~~~~~---~~~~~~~~~~~~l~~~~----------~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~  332 (438)
T PRK10133        266 AQFCYVG---AQTACWSYLIRYAVEEI----------PGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYA  332 (438)
T ss_pred             HHHHHHH---HHHHHHHHHHHHHhhhc----------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence            1111111   111111111111 1100          0111122222334455677899999999999999999887776


Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhhhcc
Q 013910          307 IFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH  386 (434)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g  386 (434)
                      .+....+......... ..........++....++..+....|.+|.+ .+++.++.. +..+|+.+.|.+.+.+.|..|
T Consensus       333 ~~~~~~~~~~~~~~~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~-~~~as~l~~-~~~~g~~~~~~i~G~l~~~~g  409 (438)
T PRK10133        333 LIAMALCLISAFAGGH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAG  409 (438)
T ss_pred             HHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHHHHHHHHHHHcccchh-hccchhHHh-HHhccchHHHHHHHHHHHhcc
Confidence            5555443333222221 1122222233344455778888888988875 566777665 455677888888888777665


Q ss_pred             -hhhHHHHHHH
Q 013910          387 -QTAAILLLEA  396 (434)
Q Consensus       387 -~~~~~~~~~~  396 (434)
                       ....+++...
T Consensus       410 ~~~~~~~v~~~  420 (438)
T PRK10133        410 NIPTAELIPAL  420 (438)
T ss_pred             chHHHHHHHHH
Confidence             3445544333

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.82  E-value=7.9e-19  Score=173.08  Aligned_cols=122  Identities=22%  Similarity=0.301  Sum_probs=108.8

Q ss_pred             hhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHHHHHHHHHH
Q 013910           23 LYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFG  101 (434)
Q Consensus        23 ~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G  101 (434)
                      .+.||+.-.+.+....+.+++.++++...+|++.+++.|++.|+..++.. ....++.-|+.+++||..++++..+..+|
T Consensus       103 ~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g  182 (495)
T KOG2533|consen  103 LLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLG  182 (495)
T ss_pred             HHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchh
Confidence            58899998888999999999999999889999999999999999999875 45567889999999999999999999999


Q ss_pred             HHHHHHHHHHH------hcccchHHHHHHHHHHHHHHHH-HHHhcCCChh
Q 013910          102 SVSEAALAWIV------MPILTWRWLLALSAIPAFVLLI-FIVFMPESPR  144 (434)
Q Consensus       102 ~~l~~~l~~~~------~~~~~Wr~~f~~~~i~~~l~~~-~~~~lpESp~  144 (434)
                      .++|+++++.+      ....||||.|++.++.+++..+ ..+++|++|.
T Consensus       183 ~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~  232 (495)
T KOG2533|consen  183 NIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPS  232 (495)
T ss_pred             hHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChh
Confidence            99999999886      3457999999999998888755 4567999998

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.82  E-value=8e-17  Score=158.20  Aligned_cols=318  Identities=15%  Similarity=0.083  Sum_probs=179.1

Q ss_pred             hhHhhh-----cchH-HHHHHHHHHHHHHHHHhhc---ccHHHHHHHHHHHHhcCCCc-hhhhhhhhhccCCCcchhHHH
Q 013910           23 LYFIFA-----FSRM-SILGGALVTFVAGLLSAFS---PNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMV   92 (434)
Q Consensus        23 ~~~~~~-----GRr~-~l~~~~~~~~i~~~~~~~~---~~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~   92 (434)
                      .+.||+     |||+ .+..+.....++....++.   .++..+++..++.|+..+.. .+..++..|+.|+++|++..+
T Consensus        54 ~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~  133 (402)
T PRK11902         54 PLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAA  133 (402)
T ss_pred             HHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHH
Confidence            479999     8886 5777777777777666666   35677788877777655443 345677899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHHHHHHHhcCCChhHHhhcCChHHHHHHHHHHHHHcCCCCC
Q 013910           93 VFSTFWTFGSVSEAALAWIVMPI-LTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLP  171 (434)
Q Consensus        93 ~~~~~~~~G~~l~~~l~~~~~~~-~~Wr~~f~~~~i~~~l~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~  171 (434)
                      +...++.+|.++++.++..+.+. .+||..|++.++..++..+..+++||+++..   ++.++..               
T Consensus       134 ~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~~~~~~e~~~~~---~~~~~~~---------------  195 (402)
T PRK11902        134 VKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALTTLWAPEPEVPA---RPPRSLG---------------  195 (402)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCcccc---cccchhH---------------
Confidence            99999999999999888777664 5999999998887666555556678765410   0000000               


Q ss_pred             CCCccCCCCCCCcccccCCCCccccccccccccccccccchhhhccCcchHHHHHHHHHH-HHHHHHHHHHHHHHHHhhh
Q 013910          172 SGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVL-YFGNSFVYYGIVLLASELS  250 (434)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~  250 (434)
                                           ++              ....++.+++++..+........ ...+.. ++..  ..+.+.
T Consensus       196 ---------------------~~--------------~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~-~~~~--~~~~l~  237 (402)
T PRK11902        196 ---------------------EA--------------VVGPLRDFFSRRGAWALLLLIVLYKLGDAF-AGSL--STTFLI  237 (402)
T ss_pred             ---------------------HH--------------HHHHHHHHHhCcCHHHHHHHHHHHHhHHHH-HHHH--HHHHHH
Confidence                                 00              00012223333322222222222 111111 1111  111111


Q ss_pred             cccCCCCcccccccCccchhHHHH-HHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHH---Hhhhhh-HHH
Q 013910          251 GSQSKCSSSILLSENVQDASVYIN-VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPL---VTLQSN-ILL  325 (434)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~---~~~~~~-~~~  325 (434)
                      ..           .+.+....... ........++|..+++++.||+|||+.+..+.....+..+.+   ....++ +..
T Consensus       238 ~~-----------~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~  306 (402)
T PRK11902        238 RG-----------AGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTM  306 (402)
T ss_pred             Hh-----------cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHH
Confidence            10           01111111111 112234578899999999999999988766555444332221   121122 222


Q ss_pred             HHHHHHHHHH----HhhhhhhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHH
Q 013910          326 TALLSGARMF----SMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLS  401 (434)
Q Consensus       326 ~~~~~~~~~~----~~~~~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~  401 (434)
                      ........++    ..........+..+.+|.+    ..++.+++..++++..+.+.+.+.|..|....+.+.+.+++++
T Consensus       307 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~  382 (402)
T PRK11902        307 ALAIGIENLCGGMGTAAFVALLMALCNRSFSAT----QYALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPG  382 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence            1111111111    1122344455666666644    4455555555666555557788888877666677777777777


Q ss_pred             HHHHHhcccc
Q 013910          402 VVVILLIPFE  411 (434)
Q Consensus       402 ~~~~~~~~~e  411 (434)
                      .++.+...++
T Consensus       383 ~~~~~~~~~~  392 (402)
T PRK11902        383 LALLWLMRGT  392 (402)
T ss_pred             HHHHHHHhhh
Confidence            6666555433

>PRK10054 putative transporter; Provisional

Probab=99.82  E-value=1.4e-17  Score=163.06  Aligned_cols=313  Identities=12%  Similarity=0.081  Sum_probs=184.0

Q ss_pred             hhhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCc-hhhhhhhhhccCCCcchhHHHHHHHHHHH
Q 013910           22 PLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTF  100 (434)
Q Consensus        22 ~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~  100 (434)
                      ..+.||+|||+.+.++.....++.++.++++|+..++++|++.|.+.+.. .+...++.|..|+++|++..++.....++
T Consensus        64 G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l  143 (395)
T PRK10054         64 GILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNI  143 (395)
T ss_pred             HHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHH
Confidence            46999999999999999988888888899999999999999988765543 34567889999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH-HHHhcCCChhHHhhcCChHHHHHHHHHHHHHcCCCCCCCCccCCC
Q 013910          101 GSVSEAALAWIVMPILTWRWLLALSAIPAFVLLI-FIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDG  179 (434)
Q Consensus       101 G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~-~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~  179 (434)
                      |..+++.++..+.. .+||..|.+.++..++..+ ..+++||+++    +++.++                         
T Consensus       144 g~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~----~~~~~~-------------------------  193 (395)
T PRK10054        144 GWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRSEK----AIATET-------------------------  193 (395)
T ss_pred             HHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhcccc----ccccch-------------------------
Confidence            99999998887654 6899999988777666543 3344565432    000000                         


Q ss_pred             CCCCcccccCCCCccccccccccccccccccchhhhcc-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCc
Q 013910          180 TNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLF-SPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSS  258 (434)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (434)
                          ++      .       .           +.+..+ +++.+.-........+...........+......       
T Consensus       194 ----~~------~-------~-----------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------  238 (395)
T PRK10054        194 ----GS------V-------W-----------SPSVLLQDKALLWFTCSGFLASFVSGAFASCISQYVMVVAD-------  238 (395)
T ss_pred             ----hh------h-------h-----------hhhhhccCceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcc-------
Confidence                00      0       0           000011 1222111111111111111000001111111100       


Q ss_pred             ccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHHHh
Q 013910          259 SILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLT-ALLSGARMFSM  337 (434)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  337 (434)
                           .+.................++.....+.+.||.++|+.+..+..+..+....+....++.... ...........
T Consensus       239 -----~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  313 (395)
T PRK10054        239 -----SDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEI  313 (395)
T ss_pred             -----cchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHH
Confidence                 001111111112222233445556677889999999988777655554443333222222111 11111111111


Q ss_pred             hhhhhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHH
Q 013910          338 GTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVI  405 (434)
Q Consensus       338 ~~~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~  405 (434)
                      ...+.......+..|++.|+++.+.. +.+++|..++|.+.+.+.|..+....+.+++.+..++.++.
T Consensus       314 ~~~p~~~~~~~~~~p~~~~~~~~~~~-~~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~  380 (395)
T PRK10054        314 IYAPGEYMLIDHIAPPGMKASYFSAQ-SLGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLM  380 (395)
T ss_pred             HHHhhHHHHHHHhCCcccceehHhHH-HHHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHH
Confidence            22345566788999999999998865 46779999999999999998765555555544444443333

>TIGR00901 2A0125 AmpG-related permease

Probab=99.81  E-value=1.4e-17  Score=160.84  Aligned_cols=283  Identities=11%  Similarity=0.081  Sum_probs=164.8

Q ss_pred             hhhHhhh-----cchHHH-HHHHHHHHHHHHHHhhcc---cHHHHHHHHHHHHhcCCCc-hhhhhhhhhccCCCcchhHH
Q 013910           22 PLYFIFA-----FSRMSI-LGGALVTFVAGLLSAFSP---NYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWM   91 (434)
Q Consensus        22 ~~~~~~~-----GRr~~l-~~~~~~~~i~~~~~~~~~---~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~   91 (434)
                      ..+.||+     |||+.+ +.+.+...++....++.+   +...+....++.|.+.+.. .+...++.|++|+|+|+++.
T Consensus        42 g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~  121 (356)
T TIGR00901        42 SPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGS  121 (356)
T ss_pred             HHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHH
Confidence            3578997     999975 566666667766677774   4555666666776655443 34456789999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccc--------hHHHHHHHHHHHHHHHHHHHh-cCCChhHHhhcCChHHHHHHHHHH
Q 013910           92 VVFSTFWTFGSVSEAALAWIVMPILT--------WRWLLALSAIPAFVLLIFIVF-MPESPRYLCTKGRITDAHNILDKI  162 (434)
Q Consensus        92 ~~~~~~~~~G~~l~~~l~~~~~~~~~--------Wr~~f~~~~i~~~l~~~~~~~-lpESp~~l~~~~~~~~a~~~l~~~  162 (434)
                      ++...+..+|.++++.++..+.+..+        ||..|++.++..++..+..++ .||+++.   +.+.++..+     
T Consensus       122 ~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~---~~~~~~~~~-----  193 (356)
T TIGR00901       122 TIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQED---ASVPKPLTQ-----  193 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccCCCcc---cccchhHHH-----
Confidence            99999999999999999887766666        999999998877776555443 5664320   000000000     


Q ss_pred             HHHcCCCCCCCCccCCCCCCCcccccCCCCccccccccccccccccccchhhhccCcchHHHHHHHHHHHHHHHHHHHHH
Q 013910          163 AQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGI  242 (434)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  242 (434)
                                                         +       .+   ..++.+++.+..++........+.....++..
T Consensus       194 -----------------------------------~-------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (356)
T TIGR00901       194 -----------------------------------A-------VL---KPIREFFQRKNMIQALLLLLLIVLYKLGDSAA  228 (356)
T ss_pred             -----------------------------------H-------HH---HHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH
Confidence                                               0       00   01112222221111222222222223333333


Q ss_pred             HHHHHhhhcccCCCCcccccccCccchhH-HHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhh--
Q 013910          243 VLLASELSGSQSKCSSSILLSENVQDASV-YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTL--  319 (434)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~--  319 (434)
                      ..+.+.+..+.           +.+.... ........+..++|.++++++.||+|||+.+..+.++..+........  
T Consensus       229 ~~~~~~~l~~~-----------g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~  297 (356)
T TIGR00901       229 TVLTTLFLLDM-----------GFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLAS  297 (356)
T ss_pred             HHHHHHHHHHc-----------CCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            22222221110           1111111 112222334567899999999999999988877766655543322221  


Q ss_pred             h--------hh-HHHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHhHHHHhhh
Q 013910          320 Q--------SN-ILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGR  368 (434)
Q Consensus       320 ~--------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~a~gi~~~~~~  368 (434)
                      .        +. +..........++.....+....+..|.+|++.|++.+|+.++..+
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       298 NGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             cCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            1        11 2111112122222334466778899999999999999999887654

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.80  E-value=2.6e-16  Score=154.19  Aligned_cols=123  Identities=14%  Similarity=0.133  Sum_probs=103.7

Q ss_pred             hhhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCchh-hhhhhhhccCCCcchhHHHHHHHHHHH
Q 013910           22 PLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHV-FFSWFMEFVPPSNRGKWMVVFSTFWTF  100 (434)
Q Consensus        22 ~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~~~-~~~~~~E~~p~~~Rg~~~~~~~~~~~~  100 (434)
                      +...||+|||+.+..+.....++.++..+++|+..+++.|++.|++.+...+ ...+..|..++++|++..+..+.+..+
T Consensus        64 G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (394)
T PRK11652         64 GPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILV  143 (394)
T ss_pred             hhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            3689999999999999999999999999999999999999999998876433 344567889999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH-HHHHhcCCChh
Q 013910          101 GSVSEAALAWIVMPILTWRWLLALSAIPAFVLL-IFIVFMPESPR  144 (434)
Q Consensus       101 G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~-~~~~~lpESp~  144 (434)
                      |..+++.++..+.+..+||+.|.+.++..++.. +..+++||+|+
T Consensus       144 ~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~  188 (394)
T PRK11652        144 SPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRP  188 (394)
T ss_pred             HHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCc
Confidence            999999988888777899999999877666543 34556788653

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.80  E-value=2.5e-17  Score=182.30  Aligned_cols=298  Identities=9%  Similarity=-0.074  Sum_probs=173.1

Q ss_pred             hhHhhhcchHHHHH---HHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCc-hhhhhhhhhccCCCcchhHHHHHHHHH
Q 013910           23 LYFIFAFSRMSILG---GALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFW   98 (434)
Q Consensus        23 ~~~~~~GRr~~l~~---~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~   98 (434)
                      .+.||+|||+++..   ..+......+.....+|+++++++|+++|++.+.. ++..+++.|++|+++|+++.++.+.+.
T Consensus        74 ~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~  153 (1140)
T PRK06814         74 QLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGT  153 (1140)
T ss_pred             hhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHH
Confidence            58999999997643   22222222333334589999999999999998765 456678899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcCCChhHHhhcCChHHHHHHHHHHHHHcCCCCCCCCccCC
Q 013910           99 TFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSD  178 (434)
Q Consensus        99 ~~G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~  178 (434)
                      .+|.+++++++.++....+||+.|+...+..++.++..+++||++.-  .+++                           
T Consensus       154 ~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---------------------------  204 (1140)
T PRK06814        154 FIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKTGNA--APDL---------------------------  204 (1140)
T ss_pred             HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCCCCC--CCCC---------------------------
Confidence            99999999999998888899999966555555555556667765420  0000                           


Q ss_pred             CCCCCcccccCCCCccccccccccccccccccchhhhccCcchHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 013910          179 GTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTIL-LWVLYFGNSFVYYGIVLLASELSGSQSKCS  257 (434)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (434)
                           +.     +. ....          +....++..++.+......+ ....++.    ++++..+.+.+....    
T Consensus       205 -----~~-----~~-~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~p~~~~~~----  255 (1140)
T PRK06814        205 -----KI-----DR-NIIR----------STITLLKYAKADKRIWLAILGISWFWLV----GAVVLSQLPLLAKET----  255 (1140)
T ss_pred             -----ee-----cc-chHH----------HHHHHHHHHhcCchHHHHHHHHHHHHHH----HHHHHHHhHHHHHHH----
Confidence                 00     00 0000          00011222222222222212 1111111    112212222221100    


Q ss_pred             cccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhh------------------
Q 013910          258 SSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTL------------------  319 (434)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~------------------  319 (434)
                            .+..............++.++|.++.++++|+.++++.+..+.++.++..+.+...                  
T Consensus       256 ------~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  329 (1140)
T PRK06814        256 ------LGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFL  329 (1140)
T ss_pred             ------cCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhh
Confidence                  00111111222334456778899999999988776655444433333322211110                  


Q ss_pred             --hhhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhhh
Q 013910          320 --QSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTS  384 (434)
Q Consensus       320 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~  384 (434)
                        .+.+......+...++..........+..+..|++.|++++|+.+.++.++..+++.+.+.+.+.
T Consensus       330 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~  396 (1140)
T PRK06814        330 SKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQAL  396 (1140)
T ss_pred             cccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHh
Confidence              11121111111111222223345677889999999999999999999999998999888776643

>TIGR00896 CynX cyanate transporter

Probab=99.79  E-value=9.4e-17  Score=154.99  Aligned_cols=291  Identities=18%  Similarity=0.178  Sum_probs=169.9

Q ss_pred             hhhhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHHHHHHHH
Q 013910           21 EPLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWT   99 (434)
Q Consensus        21 ~~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~   99 (434)
                      .+++.||+|||+.+..+.+...++.++. .+++...+++.|++.|+|.+... ....+..|+.| ++|+++.+..+.+..
T Consensus        55 ~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  132 (355)
T TIGR00896        55 APWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALM  132 (355)
T ss_pred             HHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHH
Confidence            3468999999999999998888877776 77899999999999999987643 33345668775 689999999999999


Q ss_pred             HHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHHHHHHHhcCCChhHHhhcCChHHHHHHHHHHHHHcCCCCCCCCccC
Q 013910          100 FGSVSEAALAWIVMPIL--TWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTS  177 (434)
Q Consensus       100 ~G~~l~~~l~~~~~~~~--~Wr~~f~~~~i~~~l~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~  177 (434)
                      +|..+++.+...+.+..  +||+.|...++..++..  ..++||+++      +.+                  ++    
T Consensus       133 ~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~--~~~~~~~~~------~~~------------------~~----  182 (355)
T TIGR00896       133 GGAALAAAATVPLAQHSGGHWQQALAWWALPALLAL--LAWIPQVRR------RVA------------------AN----  182 (355)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH--HHHhhhhcc------ccC------------------CC----
Confidence            99999988877665543  49999887665544322  233454321      000                  00    


Q ss_pred             CCCCCCcccccCCCCccccccccccccccccccchhhhcc-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q 013910          178 DGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLF-SPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKC  256 (434)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (434)
                            ++. .   ..                  ..+..+ +++.+..    ....+.....+++...+.+.+..+.   
T Consensus       183 ------~~~-~---~~------------------~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~lp~~~~~~---  227 (355)
T TIGR00896       183 ------QTT-T---RL------------------TPVRIWRSPLAWQV----TVFFGLQSGLYYSLIGWLPAILISH---  227 (355)
T ss_pred             ------CCC-C---CC------------------CCchhhcCHhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHc---
Confidence                  000 0   00                  000111 1222111    1111222233334333333332111   


Q ss_pred             CcccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhh-chhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 013910          257 SSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRV-GRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMF  335 (434)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~-gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (434)
                              +.+............++.+++.++.+++.||+ +||+.+..+..+..+....+....+........ ...+.
T Consensus       228 --------g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~g~~  298 (355)
T TIGR00896       228 --------GASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWAWAL-VLGLG  298 (355)
T ss_pred             --------CCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHh
Confidence                    11111112233345577889999999999999 556555555444444333332222111111111 11111


Q ss_pred             Hhhhhhhhhhhcc-cccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhhhcch
Q 013910          336 SMGTFIIANIFAP-EIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQ  387 (434)
Q Consensus       336 ~~~~~~~~~~~~~-El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~  387 (434)
                      ....++....... +..+++.++...++.+.++++++.++|.+.+.+.|..|.
T Consensus       299 ~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~  351 (355)
T TIGR00896       299 QGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGN  351 (355)
T ss_pred             hhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            2222334344444 444567788999999999999999999999988886653

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00889 2A0110 nucleoside transporter

Probab=99.79  E-value=2.5e-16  Score=155.22  Aligned_cols=331  Identities=12%  Similarity=0.056  Sum_probs=179.2

Q ss_pred             hhHhhhcc-hHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCch-hh----hhhhh----hccCCCcchhHHH
Q 013910           23 LYFIFAFS-RMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VF----FSWFM----EFVPPSNRGKWMV   92 (434)
Q Consensus        23 ~~~~~~GR-r~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~~-~~----~~~~~----E~~p~~~Rg~~~~   92 (434)
                      ...||+|| |+.+.++.+.+.++..+..+.+++..+++.|++.|++.+... ..    ..+..    |......|.+..+
T Consensus        60 ~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G  139 (418)
T TIGR00889        60 IIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG  139 (418)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh
Confidence            58999965 778888888888888888888999999999999999765432 21    12322    3333344555544


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcCCChhHHhhcCChHHHHHHHHHHHHHcCCCCCC
Q 013910           93 VFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPS  172 (434)
Q Consensus        93 ~~~~~~~~G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~  172 (434)
                            .+|..+++.++..+.....|+. |++.++..++..+..+++||+|+-   +++.++                  
T Consensus       140 ------~lG~~ig~~l~g~l~~~~~~~~-f~~~~~~~~~~~~~~~~~~e~~~~---~~~~~~------------------  191 (418)
T TIGR00889       140 ------TIGFIAAMWAVSLLDIELSNIQ-LYITAGSSALLGVFALTLPDIPVA---KSTAKM------------------  191 (418)
T ss_pred             ------hHHHHHHHHHHHHhcccchhHH-HHHHHHHHHHHHHHHhcCCCCCCC---cccccc------------------
Confidence                  2456666666555433345665 445555455544555678887630   000000                  


Q ss_pred             CCccCCCCCCCcccccCCCCccccccccccccccccccchhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 013910          173 GNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGS  252 (434)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  252 (434)
                                 +.  +   + ..             +......+.+++++.-..........+. .++.  +....+.. 
T Consensus       192 -----------~~--~---~-~~-------------~~~~~~~~k~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~-  237 (418)
T TIGR00889       192 -----------SI--K---V-ML-------------GLDAFILFKNKRMAIFFFFSMLLGAPLQ-ITNI--FGNGFLHE-  237 (418)
T ss_pred             -----------CH--H---H-Hh-------------hhhHHHHhcCCCeeeHHHHHHHHHhHHH-HHHH--hHHHHHHH-
Confidence                       00  0   0 00             0000001111221111111111111111 1111  11111110 


Q ss_pred             cCCCCcccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhh-h--HH-HHHH
Q 013910          253 QSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQS-N--IL-LTAL  328 (434)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~-~--~~-~~~~  328 (434)
                      ... ....  ..+...........+..+.++++.+..+.++||+|||+.+..+.+..++.......... .  .. ....
T Consensus       238 ~g~-~~~~--~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~  314 (418)
T TIGR00889       238 FGR-NPEF--ADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLS  314 (418)
T ss_pred             hcc-cccc--cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHH
Confidence            000 0000  00000011122334455677888999999999999999998887766654433332111 1  11 1111


Q ss_pred             HHHHHHHHhhhhhhhhhhcccccCCCchhhHHhHHH-HhhhHhHhhHHHHHHHHhhhcc------hhhHHHHHHHHHHHH
Q 013910          329 LSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAY-AVGRIGGMVCPLVAVGLVTSCH------QTAAILLLEALIVLS  401 (434)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~El~P~~~R~~a~gi~~-~~~~ig~~~~p~~~~~l~~~~g------~~~~~~~~~~~~~i~  401 (434)
                      ............+....+.+|.+|++.|+++.|+.+ ....+|++++|.+.+.+.+..+      ....+.+.+++.+++
T Consensus       315 ~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~  394 (418)
T TIGR00889       315 MIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAIL  394 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHH
Confidence            111111111223445677899999999999999997 4567899999999999888654      234566777777777


Q ss_pred             HHHHHhcccccCCcccc
Q 013910          402 VVVILLIPFETKGKELV  418 (434)
Q Consensus       402 ~~~~~~~~~et~~~~~~  418 (434)
                      ++..+++.+|+++.-..
T Consensus       395 ~~l~~~~~~~~~~~~~~  411 (418)
T TIGR00889       395 AVLFMIFFKYSHNAIKV  411 (418)
T ss_pred             HHHHHHHhCCcccCCCC
Confidence            77777777888766433

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.78  E-value=6.7e-19  Score=166.03  Aligned_cols=122  Identities=22%  Similarity=0.304  Sum_probs=107.6

Q ss_pred             hhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCc-hhhhhhhhhccCCCcchhHHHHHHHHHHHH
Q 013910           23 LYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFG  101 (434)
Q Consensus        23 ~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G  101 (434)
                      .+-|||-||+++.++..+|.+++++++++..|+++.++|-++|+|.+.. ++..+.+++.+|..+|+++.++++.+.++|
T Consensus        90 yLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvG  169 (493)
T KOG1330|consen   90 YLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVG  169 (493)
T ss_pred             HHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccc
Confidence            4789999999999999999999999999999999999999999999885 566788999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccc-hHHHHHHHHHHHHHHHH-HHHhcCCChh
Q 013910          102 SVSEAALAWIVMPILT-WRWLLALSAIPAFVLLI-FIVFMPESPR  144 (434)
Q Consensus       102 ~~l~~~l~~~~~~~~~-Wr~~f~~~~i~~~l~~~-~~~~lpESp~  144 (434)
                      ..+|.+.+..+.+..+ |||.|...++.+++..+ .+++.+|.+|
T Consensus       170 sglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~r  214 (493)
T KOG1330|consen  170 SGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPER  214 (493)
T ss_pred             cceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCccc
Confidence            9988887776665544 99999999999888755 4556777654

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.77  E-value=2.7e-16  Score=155.38  Aligned_cols=134  Identities=12%  Similarity=0.083  Sum_probs=88.6

Q ss_pred             HHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCchh
Q 013910          278 TSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRS  357 (434)
Q Consensus       278 ~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~  357 (434)
                      ..+...++.++++++.||+|||+.+..+..+.++......+..+.+......................+.+|.+|++.|+
T Consensus       271 ~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a  350 (420)
T PRK09528        271 QVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSA  350 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccee
Confidence            34566789999999999999999887776665554444333333332222111111111111233456778999999999


Q ss_pred             hHHhH-HHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccc
Q 013910          358 TGAGV-AYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFE  411 (434)
Q Consensus       358 ~a~gi-~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e  411 (434)
                      ++.+. .++.+.+|++++|.+.+.+.|..|....+...+++.++..++.++..++
T Consensus       351 ~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~  405 (420)
T PRK09528        351 TIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSG  405 (420)
T ss_pred             eeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence            98776 4566789999999999999987776667777777777666666655433

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.77  E-value=8.9e-16  Score=150.46  Aligned_cols=321  Identities=12%  Similarity=0.071  Sum_probs=172.7

Q ss_pred             hhHhhhcchHHHHHHHHHHHHHHHHH---hhc-----ccHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHH
Q 013910           23 LYFIFAFSRMSILGGALVTFVAGLLS---AFS-----PNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVV   93 (434)
Q Consensus        23 ~~~~~~GRr~~l~~~~~~~~i~~~~~---~~~-----~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~   93 (434)
                      ++.||+|||+.++.......+.....   .+.     +.+..+.+.|++.|++.+... ....+..|..+  +++...+.
T Consensus        60 ~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~  137 (396)
T TIGR00882        60 LISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGK  137 (396)
T ss_pred             HHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcccccch
Confidence            68999999999988776665443221   122     223456777888998877643 33445555433  33445556


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHh-cCCChhHHhhcCChHHHHHHHHHHHHHcCCCCCC
Q 013910           94 FSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVF-MPESPRYLCTKGRITDAHNILDKIAQFNQTSLPS  172 (434)
Q Consensus        94 ~~~~~~~G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~~~~~-lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~  172 (434)
                      .....++|..+++.++..+. ..+||++|++.++..++..+..+. .||+|+.       ++..+        +      
T Consensus       138 ~~~~~~~g~~~g~~~~g~l~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~--------~------  195 (396)
T TIGR00882       138 ARMFGCVGWALCASIAGILF-SIDPQIVFWLGSGFALILMLLLMFAKPKAPSS-------ATVAN--------A------  195 (396)
T ss_pred             hhhhcccHHHHHHHHHhhhh-ccCchHHHHHHHHHHHHHHHHHHHhCCCCchh-------hhhhc--------c------
Confidence            66666788888887776554 359999999988877776554444 4554421       00000        0      


Q ss_pred             CCccCCCCCCCcccccCCCCccccccccccccccccccchhhhccC-cchHHHHHHHHHHHHH-HHHHHHHHHHHHHhhh
Q 013910          173 GNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFS-PRFFKTTILLWVLYFG-NSFVYYGIVLLASELS  250 (434)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~  250 (434)
                                .+.  + .++.               ..++..+.++ ++.+.-.......... +....+...+......
T Consensus       196 ----------~~~--~-~~~~---------------~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~  247 (396)
T TIGR00882       196 ----------LGA--N-ASAF---------------SLKLALELFRQRKFWMFVLYVVGVACVYDVFDQQFANFFTSFFA  247 (396)
T ss_pred             ----------ccc--c-cCCC---------------CHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence                      000  0 0000               0011222222 2222111111111111 0111111111111110


Q ss_pred             cccCCCCcccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 013910          251 GSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLS  330 (434)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (434)
                       .           .+...........+..+.+.++....+.+.||+|||+.+.++..+.++.........+.+.......
T Consensus       248 -~-----------~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~  315 (396)
T TIGR00882       248 -T-----------PQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKM  315 (396)
T ss_pred             -c-----------cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence             0           0001111112223445667778888999999999999888776665554433333333332222111


Q ss_pred             HHHHHHhhhhhhhhhhcccccCCCchhhHHhH-HHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHh
Q 013910          331 GARMFSMGTFIIANIFAPEIYPTSMRSTGAGV-AYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILL  407 (434)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~El~P~~~R~~a~gi-~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~  407 (434)
                      ....+..........+..|..|++.++++.+. .+....+|++++|.+.+.+.|..|....+.+.+++.++..++..+
T Consensus       316 l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~  393 (396)
T TIGR00882       316 LHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISVF  393 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            11111111122334466788999999998877 466788999999999999999877777777777777777666544

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.75  E-value=7.9e-16  Score=152.80  Aligned_cols=297  Identities=15%  Similarity=0.024  Sum_probs=168.5

Q ss_pred             hhHhh----hcchH-HHHHHHHHHHHHHHHHhhccc------HHHHHHHHHHHHhcCCCch-hhhhhhhhcc-CCCcchh
Q 013910           23 LYFIF----AFSRM-SILGGALVTFVAGLLSAFSPN------YISLLILRGLAGAGLGSGH-VFFSWFMEFV-PPSNRGK   89 (434)
Q Consensus        23 ~~~~~----~GRr~-~l~~~~~~~~i~~~~~~~~~~------~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~-p~~~Rg~   89 (434)
                      .++||    +|||+ .++.+.....++.++..+.++      ...+++.+++.+++.+... ...++..|.+ ++++|++
T Consensus        57 ~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~  136 (437)
T TIGR00792        57 NIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERES  136 (437)
T ss_pred             EeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHH
Confidence            47886    78855 456677777777777766654      4567778888887766533 3345567877 5789999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-------cccchHHHHHHHHHHHHHHHHH-HHhcCCChhHHhhcCChHHHHHHHHH
Q 013910           90 WMVVFSTFWTFGSVSEAALAWIVM-------PILTWRWLLALSAIPAFVLLIF-IVFMPESPRYLCTKGRITDAHNILDK  161 (434)
Q Consensus        90 ~~~~~~~~~~~G~~l~~~l~~~~~-------~~~~Wr~~f~~~~i~~~l~~~~-~~~lpESp~~l~~~~~~~~a~~~l~~  161 (434)
                      ..++.+.+..+|.++++.+...+.       +..+||+.+.+.++.+++..+. .+..||+++.     +.         
T Consensus       137 ~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~-----~~---------  202 (437)
T TIGR00792       137 LSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSE-----IP---------  202 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCC-----CC---------
Confidence            999999888888877766544332       2468999999888877766444 4456665410     00         


Q ss_pred             HHHHcCCCCCCCCccCCCCCCCcccccCCCCccccccccccccccccccchhhhccCcchHHHHHHHHHHHHHHHHHHHH
Q 013910          162 IAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYG  241 (434)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  241 (434)
                                         .  ++    .++.+              ....++.+++.+........   .+.....++.
T Consensus       203 -------------------~--~~----~~~~~--------------~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~  240 (437)
T TIGR00792       203 -------------------K--NI----EKKLS--------------LKQIFKALFKNDQLLILCLA---YLFYNLAFNI  240 (437)
T ss_pred             -------------------c--cc----ccCCC--------------HHHHHHHHhCCHHHHHHHHH---HHHHHHHHHH
Confidence                               0  00    00000              00112223332222212111   1111111221


Q ss_pred             HHHHHHhhhcccCCCCcccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhh
Q 013910          242 IVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQS  321 (434)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~  321 (434)
                      ...+.+.+...       .   .+.. ........+..+..+++..+.++++||+|||+.+..+..+..+..+......+
T Consensus       241 ~~~~~~~~~~~-------~---~~~~-~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~  309 (437)
T TIGR00792       241 KNGVQVYYFTY-------V---LGDP-ELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGS  309 (437)
T ss_pred             HcchhheeEee-------e---cCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcch
Confidence            11111111100       0   0001 11111223345777888999999999999999888776665554443332222


Q ss_pred             h-HHHHHHHHHHHHHHhhhhhhhhhhcccccC-------CCchhhHHhHHHHhhhHhHhhHHHHHHHHhhhcc
Q 013910          322 N-ILLTALLSGARMFSMGTFIIANIFAPEIYP-------TSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH  386 (434)
Q Consensus       322 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~El~P-------~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g  386 (434)
                      + +..........+......+..+.+.+|..|       .+.++++.|+.+.+.++++.+++.+.+.+.+..|
T Consensus       310 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G  382 (437)
T TIGR00792       310 NLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIG  382 (437)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            2 222222122222222334566777788765       5667999999999999999999999998876543

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.75  E-value=6.7e-15  Score=143.56  Aligned_cols=310  Identities=13%  Similarity=0.003  Sum_probs=174.0

Q ss_pred             hhHhhhcchHHHHHHHH-HHHHHH-HHHhhcccHHHHHHHHHHHHhcCCCc-hhhhhhhhhccCCCcchhHHHHHHHHHH
Q 013910           23 LYFIFAFSRMSILGGAL-VTFVAG-LLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWT   99 (434)
Q Consensus        23 ~~~~~~GRr~~l~~~~~-~~~i~~-~~~~~~~~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~   99 (434)
                      .+.||+|||........ ...+.. .....+++++.+++.|+++|.+.+.. +....+..|+  +++|++..+......+
T Consensus        61 ~l~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~s  138 (382)
T TIGR00902        61 PLIKDANHIIIALRLLALASAIFAAAFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGS  138 (382)
T ss_pred             HHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHH
Confidence            47899998543322221 111222 23446789999999999999877664 3344444454  5788999999999999


Q ss_pred             HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcCCChhHHhhcCChHHHHHHHHHHHHHcCCCCCCCCccCCC
Q 013910          100 FGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDG  179 (434)
Q Consensus       100 ~G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~  179 (434)
                      +|.+++++++..+.+..|||..|.+..+..++.. ..+.++|+++    +++.+                          
T Consensus       139 lG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~~-~~~~~~~~~~----~~~~~--------------------------  187 (382)
T TIGR00902       139 AAFIIGSALFGGLIGMFDEQNILAILTAGLAFML-IGFLIKPTIP----PKDAI--------------------------  187 (382)
T ss_pred             HHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH-HHHHcCCCCC----CCccc--------------------------
Confidence            9999999998888888899999988765433322 2333344321    00000                          


Q ss_pred             CCCCcccccCCCCccccccccccccccccccchhhhccC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCc
Q 013910          180 TNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFS-PRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSS  258 (434)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (434)
                          ++    .+..               ..++....++ ++.+.-.....+.... ...++.   +.+.+..+.     
T Consensus       188 ----~~----~~~~---------------~~~~~~~~l~~~~~~~~l~~~~l~~~~-~~~~~~---~~~~~l~~~-----  235 (382)
T TIGR00902       188 ----PE----DESQ---------------GDSAFIALLKNPMNLRFLAAVCLIQGA-HAAYYG---FSAIYWQAA-----  235 (382)
T ss_pred             ----cc----cccc---------------cchhHHHHHcChHHHHHHHHHHHHHHH-HHHHHH---HHHHHHHHC-----
Confidence                00    0000               0001112222 2222221111111111 111221   111111111     


Q ss_pred             ccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhh
Q 013910          259 SILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMG  338 (434)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (434)
                            +.+.........+..+.++++...++.+.||+|+|+.+..+.+...+......+..+.+........-.+....
T Consensus       236 ------g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~  309 (382)
T TIGR00902       236 ------GISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAV  309 (382)
T ss_pred             ------CCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHH
Confidence                  11111111222345677888888999999999999999888777776555444433333222211111111112


Q ss_pred             hhhhhhhhcccccCCCchhhHHhHHHHh-hhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHH
Q 013910          339 TFIIANIFAPEIYPTSMRSTGAGVAYAV-GRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVI  405 (434)
Q Consensus       339 ~~~~~~~~~~El~P~~~R~~a~gi~~~~-~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~  405 (434)
                      ..+....+.++. |++.|+++.++.+.. ..+|.+++|.+.+.+.|..+. ..++..+++.+++.++.
T Consensus       310 ~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~~  375 (382)
T TIGR00902       310 CHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFLI  375 (382)
T ss_pred             HHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHH
Confidence            233344556677 898999999997654 458888999999999987764 45666677666665443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.72  E-value=3.1e-14  Score=138.92  Aligned_cols=308  Identities=9%  Similarity=-0.046  Sum_probs=162.5

Q ss_pred             hhHhhhcch----HHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCc-hhhhhhhhhccCCCcchhHHHHHHHH
Q 013910           23 LYFIFAFSR----MSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTF   97 (434)
Q Consensus        23 ~~~~~~GRr----~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~   97 (434)
                      ...||+|||    +.+.+.....  .......++|++.+++.|++.|++.+.. +....+..++  .++|++..+.....
T Consensus        61 ~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~  136 (382)
T PRK11128         61 PRVKDPSQLIPALRLLALLTLLF--AVAFWFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLW  136 (382)
T ss_pred             HHHhhhcchHHHHHHHHHHHHHH--HHHHHHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHH
Confidence            469999994    3332222211  1223345688999999999999876654 3333344444  45678888888888


Q ss_pred             HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcCCChhHHhhcCChHHHHHHHHHHHHHcCCCCCCCCccC
Q 013910           98 WTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTS  177 (434)
Q Consensus        98 ~~~G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~  177 (434)
                      .++|..++++++..+.+..|||..|++.++..++..+.....||.++    +++.                         
T Consensus       137 ~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~----~~~~-------------------------  187 (382)
T PRK11128        137 GSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLGQLLRPTIMP----QGES-------------------------  187 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHccCCCCC----cccc-------------------------
Confidence            89999999999999888889999998877654444333333444311    0000                         


Q ss_pred             CCCCCCcccccCCCCccccccccccccccccccchhhhccC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q 013910          178 DGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFS-PRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKC  256 (434)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (434)
                            ++  + .++                ....++..++ ++.+.-...........    .+...+.+.+..+.   
T Consensus       188 ------~~--~-~~~----------------~~~~~~~i~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~---  235 (382)
T PRK11128        188 ------RQ--Q-ESA----------------GWPAWKALLKEPTVWRFLLCVSLLQGSH----AAYYGFSAIYWQAA---  235 (382)
T ss_pred             ------cc--c-ccc----------------ccchHHHHHcChhHHHHHHHHHHHHHHh----HhHHHHHHHHHHHC---
Confidence                  00  0 000                0001222332 22222211111111111    11111111111110   


Q ss_pred             CcccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 013910          257 SSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFS  336 (434)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (434)
                              +.+....-....+..+..+++..+.+.+.||.|+|+.+..+.+...+..+.....++.+..........+..
T Consensus       236 --------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~  307 (382)
T PRK11128        236 --------GYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTF  307 (382)
T ss_pred             --------CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence                    011111111222445667788888999999999999988777666554443333333232222111111111


Q ss_pred             hhhhhhhhhhcccccCCCchhhHHhHHHHhh-hHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHH
Q 013910          337 MGTFIIANIFAPEIYPTSMRSTGAGVAYAVG-RIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVI  405 (434)
Q Consensus       337 ~~~~~~~~~~~~El~P~~~R~~a~gi~~~~~-~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~  405 (434)
                      ....+....+..+. |+..+++..++.+..+ .+|..++|.+.+.+.|..|. ..++..+++.+++.++.
T Consensus       308 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~~~~  375 (382)
T PRK11128        308 TVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPALFIR  375 (382)
T ss_pred             HHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHH
Confidence            11223333445565 4444678888876554 45668899999999887764 34555555555544433

>PTZ00207 hypothetical protein; Provisional

Probab=99.71  E-value=5e-15  Score=148.96  Aligned_cols=139  Identities=17%  Similarity=0.130  Sum_probs=105.8

Q ss_pred             hhhhHhhhcchHHHHHHHHHHHHHHHHHhhc------ccHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHH
Q 013910           21 EPLYFIFAFSRMSILGGALVTFVAGLLSAFS------PNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVV   93 (434)
Q Consensus        21 ~~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~------~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~   93 (434)
                      ..++.||+|||+++.++.+++.++.++++++      +++.++++.|++.|+|.+... .....+.+++| ++||++.++
T Consensus        81 ~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi  159 (591)
T PTZ00207         81 YSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAI  159 (591)
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHH
Confidence            3468999999999999999999999999887      689999999999999977653 33445678886 789999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH-HH--hcCCChhHHhhcCChHHHHHHHHH
Q 013910           94 FSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIF-IV--FMPESPRYLCTKGRITDAHNILDK  161 (434)
Q Consensus        94 ~~~~~~~G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~~-~~--~lpESp~~l~~~~~~~~a~~~l~~  161 (434)
                      ...+..+|..+.+.+...+.. .+|+..|++.++.+++..+. ..  ..|++|+|...++|.+++++.+++
T Consensus       160 ~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~  229 (591)
T PTZ00207        160 MKTFTGLGSAILGSIQLAFFS-DNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRL  229 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHh
Confidence            999999999765544433322 46888888777666655333 22  357788887677766676666444

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.69  E-value=6.1e-14  Score=137.20  Aligned_cols=318  Identities=13%  Similarity=-0.000  Sum_probs=167.5

Q ss_pred             hhhhhhh----hHhhhcchHHHHHHHHHHHH-HHHHHh-h--ccc-HHHHHHHHHHHHhcCCC-chhhhhhhhhccCCCc
Q 013910           17 KLLLEPL----YFIFAFSRMSILGGALVTFV-AGLLSA-F--SPN-YISLLILRGLAGAGLGS-GHVFFSWFMEFVPPSN   86 (434)
Q Consensus        17 ~~~~~~~----~~~~~GRr~~l~~~~~~~~i-~~~~~~-~--~~~-~~~l~~~R~l~Gig~g~-~~~~~~~~~E~~p~~~   86 (434)
                      |.++.|.    ..||+|||+..++.+.+... .....+ +  .++ ...++..-++.++..+. ......+..|..++++
T Consensus        51 ~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~  130 (390)
T TIGR02718        51 KFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRT  130 (390)
T ss_pred             HHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh
Confidence            5566664    47889999997666533222 121122 2  222 22333333333232222 2233445678888888


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcCCChhHHhhcCChHHHHHHHHHHHHHc
Q 013910           87 RGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFN  166 (434)
Q Consensus        87 Rg~~~~~~~~~~~~G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~  166 (434)
                      ++...+....+..+|.++++.....+.+..+||..|++.++..++..+..++++|++.     ++.++            
T Consensus       131 ~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~-----~~~~~------------  193 (390)
T TIGR02718       131 LAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDRAV-----ASPEA------------  193 (390)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCCCc-----Ccccc------------
Confidence            8988888888889999999887777777889999999998877765555555544321     00000            


Q ss_pred             CCCCCCCCccCCCCCCCcccccCCCCccccccccccccccccccchhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013910          167 QTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLA  246 (434)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  246 (434)
                                       ++     +        +      .   .++...++++...........+......+++..  .
T Consensus       194 -----------------~~-----~--------~------~---~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~--~  232 (390)
T TIGR02718       194 -----------------PL-----A--------R------R---ASLFRFFRRPLAWSLLALALLSAMTAVSGFGLS--K  232 (390)
T ss_pred             -----------------ch-----h--------h------H---HHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHh--h
Confidence                             00     0        0      0   011122222222222222222222112222211  1


Q ss_pred             HhhhcccCCCCcccccccCccchhHHHHHHHH-HhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHH-HHHhhh----
Q 013910          247 SELSGSQSKCSSSILLSENVQDASVYINVFIT-SFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLL-PLVTLQ----  320 (434)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~-~~~~~~----  320 (434)
                      +.+. +.           +.+........... ....+.|.++++++.||+|+|+.+..+......... ......    
T Consensus       233 ~~l~-~~-----------G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~  300 (390)
T TIGR02718       233 LYLV-DA-----------GWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLA  300 (390)
T ss_pred             HHHH-hc-----------CCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccC
Confidence            1111 10           11111111111111 234567788999999999999988776655422221 111110    


Q ss_pred             -hhHHHHHHHHHHHHHHhhhhhhhhhhcccccCC-CchhhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHH
Q 013910          321 -SNILLTALLSGARMFSMGTFIIANIFAPEIYPT-SMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALI  398 (434)
Q Consensus       321 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~-~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~  398 (434)
                       .............+......+..+....+..++ +.+++++++.++...+|++++|.+.+.+.|..|....+...+++.
T Consensus       301 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~  380 (390)
T TIGR02718       301 PGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLA  380 (390)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence             111111111111111112233444454555555 899999999999999999999999999988776555666666655


Q ss_pred             HHHHHH
Q 013910          399 VLSVVV  404 (434)
Q Consensus       399 ~i~~~~  404 (434)
                      +++.+.
T Consensus       381 l~a~~~  386 (390)
T TIGR02718       381 VLAILL  386 (390)
T ss_pred             HHHHHH
Confidence            555443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.69  E-value=4.1e-14  Score=141.64  Aligned_cols=111  Identities=14%  Similarity=0.038  Sum_probs=96.0

Q ss_pred             hhhHhh-hcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCc-hhhhhhhhhccCCCc---chhHHHHHHH
Q 013910           22 PLYFIF-AFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSN---RGKWMVVFST   96 (434)
Q Consensus        22 ~~~~~~-~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~---Rg~~~~~~~~   96 (434)
                      .+..|| +|||+++.++.+++.++.++.++++++..++++|++.|+|.|.. +......+|++|+++   |+...+++..
T Consensus        69 G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~  148 (475)
T TIGR00924        69 WWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYM  148 (475)
T ss_pred             HHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHH
Confidence            468899 89999999999999999999999999999999999999998875 345567789998764   8889999999


Q ss_pred             HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Q 013910           97 FWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVL  132 (434)
Q Consensus        97 ~~~~G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~  132 (434)
                      +.++|..+++.++..+.+..+||+.|.+.++..++.
T Consensus       149 ~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~  184 (475)
T TIGR00924       149 SINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIG  184 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence            999999999999888888789999999877644443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.68  E-value=6.5e-14  Score=140.34  Aligned_cols=327  Identities=17%  Similarity=0.087  Sum_probs=195.7

Q ss_pred             hhhhhhh---hhHhhhcchHHHHHHHHHHHHHHHHHhh-----cccHHHHHHHHHHHHhcCCCc-hhhhhhhhhccCCCc
Q 013910           16 PKLLLEP---LYFIFAFSRMSILGGALVTFVAGLLSAF-----SPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSN   86 (434)
Q Consensus        16 ~~~~~~~---~~~~~~GRr~~l~~~~~~~~i~~~~~~~-----~~~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~   86 (434)
                      |.+++.|   .+.||+.||+.++.+..+..+..++.++     ..+.+.+++.-++.|++.+.. ++-.+.+-|..|+++
T Consensus        57 P~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~  136 (524)
T PF05977_consen   57 PILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED  136 (524)
T ss_pred             HHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh
Confidence            4444444   6999999999999999887765444332     246788999999999987765 344567789999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcCCChhHHhhcCChHHHHHHHHHHHHHc
Q 013910           87 RGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFN  166 (434)
Q Consensus        87 Rg~~~~~~~~~~~~G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~  166 (434)
                      ...+.++.+...++..++||.+++.+....|=.+.|.+.++.-++.+.....++..+.    +++. +.+          
T Consensus       137 L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~----~~~~-~~e----------  201 (524)
T PF05977_consen  137 LPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPPP----PSSL-PRE----------  201 (524)
T ss_pred             HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc----cccc-chh----------
Confidence            9999999999999999999999998877778888888887655544433333322110    0000 000          


Q ss_pred             CCCCCCCCccCCCCCCCcccccCCCCccccccccccccccccccchhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013910          167 QTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLA  246 (434)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  246 (434)
                                                 ...++       -+   ..++...+.+..+..++...++......++.+   .
T Consensus       202 ---------------------------~~~~~-------l~---~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~aL---l  241 (524)
T PF05977_consen  202 ---------------------------RFFSA-------LR---EGLRYVRSSPPLRSVLLRSFLFNLFASAVWAL---L  241 (524)
T ss_pred             ---------------------------hhhhh-------HH---HHHHHHhcchHHHHHHHHHHHHHHhhhHHHHh---h
Confidence                                       00000       00   01222232233333322222221111112221   1


Q ss_pred             HhhhcccCCCCcccccccCccchhHHH-HHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 013910          247 SELSGSQSKCSSSILLSENVQDASVYI-NVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILL  325 (434)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (434)
                      +.+....          .+. +...|. .....+++++.|.++.+.+.+|+++++.+..+.+..++.++.+....+.+..
T Consensus       242 Pl~a~~~----------l~~-~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~  310 (524)
T PF05977_consen  242 PLFARDV----------LGG-GASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLA  310 (524)
T ss_pred             hHHHHHH----------hCC-cHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHH
Confidence            2111100          001 111222 2234456677777777777777887777777776666665555544443333


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHH
Q 013910          326 TALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVI  405 (434)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~  405 (434)
                      ....+...++.............+..|.++|++++++..++...+..++..+.+.+.+..|....+.+.++..+++.++.
T Consensus       311 ~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~  390 (524)
T PF05977_consen  311 LIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIA  390 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence            33222222233333445566778999999999999999988888777888888888887776666666555555555555


Q ss_pred             Hhc
Q 013910          406 LLI  408 (434)
Q Consensus       406 ~~~  408 (434)
                      ...
T Consensus       391 ~~~  393 (524)
T PF05977_consen  391 LRF  393 (524)
T ss_pred             HHh
Confidence            433

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.68  E-value=4.3e-15  Score=148.09  Aligned_cols=363  Identities=18%  Similarity=0.157  Sum_probs=202.5

Q ss_pred             hhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHH-HHHHhcCCCchhhhhhhhhccCCCcchhHHHHHHHHHHHH
Q 013910           23 LYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILR-GLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFG  101 (434)
Q Consensus        23 ~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R-~l~Gig~g~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G  101 (434)
                      .+.||+|.|.+.+.+.++..++.++.+|+++++++++.- ++.|+|.|..+.....+.-.+-+|+|+.+.++...+..+|
T Consensus       103 ~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kkR~lA~Gia~~GsG~G  182 (509)
T KOG2504|consen  103 ALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKKRALATGIAVSGTGVG  182 (509)
T ss_pred             HHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHHHHHHHhhhhccCCcc
Confidence            589999999999999999999999999999997766654 5777888875433222222334889999999999999999


Q ss_pred             HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHH-HhcCCChhHHhhcCChHHHHHHHHHHHHHcCCCCCCCCccCCCC
Q 013910          102 SVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFI-VFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGT  180 (434)
Q Consensus       102 ~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~~~-~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~  180 (434)
                      .++-+.+.-.+.+..|||+.+.+.+...+...+.- ..-|.+|+-.   .+ ++++  .+....    ..+..+...+..
T Consensus       183 ~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~---~~-~~~~--~~~~~~----~~~~~~~~~~~~  252 (509)
T KOG2504|consen  183 TVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKK---PN-EEKD--LRNSAA----SVESTPKPVELR  252 (509)
T ss_pred             eeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCC---ch-hhhh--hccccc----cccccccccccc
Confidence            99989888888889999999998877665554443 3345444311   11 1111  111000    000000000000


Q ss_pred             CCCcccccC---CCCccccccccccccccccccchhhhccCcchHH-HHHHHHHHH-HHHHHHHHHHHHHHHhhhcccCC
Q 013910          181 NDLDEEFST---SEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFK-TTILLWVLY-FGNSFVYYGIVLLASELSGSQSK  255 (434)
Q Consensus       181 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  255 (434)
                      ...++....   .+.....++..++.  .....+....++..+..+ +..+...+. ..+.+.++-...+.+.+..+   
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~---  327 (509)
T KOG2504|consen  253 ISERDSGLKKLSLSNLATLKRGPDKW--RNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKS---  327 (509)
T ss_pred             cccCCCCCCcccccchhhhhhCCccc--cccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh---
Confidence            000000000   00000000000000  000000001011111111 122222221 22333333333333333221   


Q ss_pred             CCcccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhch--hHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 013910          256 CSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGR--KLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGAR  333 (434)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gR--R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (434)
                              ....+.......-+.+...++|.++.|++.|+-..  +....++.+++++.........+.+..... ....
T Consensus       328 --------~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~-~~~f  398 (509)
T KOG2504|consen  328 --------LGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVF-SILF  398 (509)
T ss_pred             --------cCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHH-HHHH
Confidence                    11222223333445567889999999999999874  344455555555554333332222221111 1111


Q ss_pred             HHHhhhh-hhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhhhcchh-hHHHHHHHHHHHHHHHHHhcc
Q 013910          334 MFSMGTF-IIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQT-AAILLLEALIVLSVVVILLIP  409 (434)
Q Consensus       334 ~~~~~~~-~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~-~~~~~~~~~~~i~~~~~~~~~  409 (434)
                      .+..+.+ .....+..|+.+.+.-+.+.|+...+..++..++|.+.+.+.|.++.+ ..+++.+.+.+++++..++.+
T Consensus       399 G~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  399 GFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence            1223333 344568899999999999999999999999999999999888887744 556666677677766665554

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.68  E-value=5.2e-14  Score=140.88  Aligned_cols=335  Identities=17%  Similarity=0.181  Sum_probs=181.7

Q ss_pred             hhhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCchhhhhhhhhccCCCcchhHHHHHHHHHHHH
Q 013910           22 PLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFG  101 (434)
Q Consensus        22 ~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G  101 (434)
                      ..++|.+|||..++.+.++..++.+.++.++|..+++++-.+.|+|.|........++|..|.|.|+...++........
T Consensus        99 G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~  178 (599)
T PF06609_consen   99 GRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQELAALAISELVPNKWRGLGLAIASIPFIIT  178 (599)
T ss_pred             HHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhh
Confidence            36999999999999999999999999999999999999999999997766555545789999999988777666555554


Q ss_pred             HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH--HHHhcCCChhHHhhc-CChHHHHHHHHHHHHH-------------
Q 013910          102 SVSEAALAWIVMPILTWRWLLALSAIPAFVLLI--FIVFMPESPRYLCTK-GRITDAHNILDKIAQF-------------  165 (434)
Q Consensus       102 ~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~--~~~~lpESp~~l~~~-~~~~~a~~~l~~~~~~-------------  165 (434)
                      ...++.++..+..+.+|||.|++..+...+.++  ..++.|.+.+-+..+ .+..|..+.++++.-.             
T Consensus       179 ~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl  258 (599)
T PF06609_consen  179 TWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGL  258 (599)
T ss_pred             hcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            445666666666677999999998876555433  234445332211111 1223344445554421             


Q ss_pred             cCCCCCCCCccCCCCCCCcccccCCCCccccc-------c--ccccccccccccchhhhccCcchHHHHHHHHHHHHHHH
Q 013910          166 NQTSLPSGNLTSDGTNDLDEEFSTSEETPLLS-------S--ARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNS  236 (434)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  236 (434)
                      +-...+..            .-++.+.-....       .  ..+.....++++.+.+ +++.  +|......+..+...
T Consensus       259 ~wgG~~~~------------~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~-Lf~~--~r~~~~~lvi~fi~G  323 (599)
T PF06609_consen  259 SWGGYPYY------------PWKSAHVIAPLVIGFVLLVAFVVWEWFGAPKDPLFPHR-LFKD--RRGFAALLVISFISG  323 (599)
T ss_pred             hccCCCCC------------CCCCccchhhHHHHHHHHHHHHHhhhhccCCCCcCCHH-Hhcc--chHHHHHHHHHHHHH
Confidence            10110000            000000000000       0  0000001112222222 2221  112222223333344


Q ss_pred             HHHHHHH-HHHHhhhcccCCCCcccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhH-HHHHHHHHHHHHHH
Q 013910          237 FVYYGIV-LLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKL-SMTIMFIFVCIFLL  314 (434)
Q Consensus       237 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~-~~~~~~~~~~~~~~  314 (434)
                      ..||+.. +|+.........        ...............+.+...|.++.+.+..|++|-+ .++++..+...++.
T Consensus       324 ~~~~s~~~l~p~~~~~vf~~--------d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~G  395 (599)
T PF06609_consen  324 MNFFSVNILWPQQVVNVFGS--------DPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCG  395 (599)
T ss_pred             HHHHHHHHHHHHHHhhhccC--------CCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHH
Confidence            4455554 344332211000        0000000011122234445667777888888887644 44555544444333


Q ss_pred             HHHh--hhhhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHH
Q 013910          315 PLVT--LQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAV  379 (434)
Q Consensus       315 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~  379 (434)
                      .+..  .++....+.+...+.++..+......+...-..|++.-+++.|+..++..+||.++.-+..
T Consensus       396 ama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~  462 (599)
T PF06609_consen  396 AMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYN  462 (599)
T ss_pred             HHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            3332  2222222233333333333334455667777889999999999999998888877655554

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.66  E-value=1.1e-13  Score=138.85  Aligned_cols=107  Identities=17%  Similarity=0.112  Sum_probs=92.1

Q ss_pred             hhhhHhh-hcchHHHHHHHHHHHHHHHHHhhcccHHH-HHHHHHHHHhcCCCc-hhhhhhhhhccCCC--cchhHHHHHH
Q 013910           21 EPLYFIF-AFSRMSILGGALVTFVAGLLSAFSPNYIS-LLILRGLAGAGLGSG-HVFFSWFMEFVPPS--NRGKWMVVFS   95 (434)
Q Consensus        21 ~~~~~~~-~GRr~~l~~~~~~~~i~~~~~~~~~~~~~-l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~--~Rg~~~~~~~   95 (434)
                      -.+..|| +|||+++..+.+++.++.+.++++++... ++++|+++|+|.|.. +...+.+.|.+|++  +|+...+++.
T Consensus        70 ~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~  149 (489)
T PRK10207         70 GGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFY  149 (489)
T ss_pred             HHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHH
Confidence            3478999 99999999999999999999998876554 558999999998876 34566788999987  4577889999


Q ss_pred             HHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Q 013910           96 TFWTFGSVSEAALAWIVMPILTWRWLLALSAI  127 (434)
Q Consensus        96 ~~~~~G~~l~~~l~~~~~~~~~Wr~~f~~~~i  127 (434)
                      .++++|..+++.++.++.+..|||+.|++..+
T Consensus       150 ~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i  181 (489)
T PRK10207        150 MSINIGSLISLSLAPVIADKFGYSVTYNLCGA  181 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence            99999999999999988888899999998755

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.66  E-value=1.4e-13  Score=138.53  Aligned_cols=112  Identities=14%  Similarity=0.031  Sum_probs=91.4

Q ss_pred             hhhhhHhh-hcchHHHHHHHHHHHHHHHHHhhcc-cHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCc--chhHHHHH
Q 013910           20 LEPLYFIF-AFSRMSILGGALVTFVAGLLSAFSP-NYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSN--RGKWMVVF   94 (434)
Q Consensus        20 ~~~~~~~~-~GRr~~l~~~~~~~~i~~~~~~~~~-~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~--Rg~~~~~~   94 (434)
                      +-.++.|| +|||+.+..+.++..++..+.++++ +...++++|+++|+|.|... ....++.|++|+++  |+...+++
T Consensus        76 ~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~  155 (500)
T PRK09584         76 IGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMY  155 (500)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHH
Confidence            44579999 5999999999999999988888874 56678889999999988653 44467789998754  44567888


Q ss_pred             HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Q 013910           95 STFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFV  131 (434)
Q Consensus        95 ~~~~~~G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l  131 (434)
                      ..+.++|..+++.++.++.+..|||+.|.+.++..++
T Consensus       156 ~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i  192 (500)
T PRK09584        156 YMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLI  192 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Confidence            8999999999999998888888999999988754443

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.66  E-value=1.7e-14  Score=133.00  Aligned_cols=119  Identities=21%  Similarity=0.165  Sum_probs=96.4

Q ss_pred             hhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCchhhhhhhhhccCCCcchhHHHHHHHHHHHHH
Q 013910           23 LYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGS  102 (434)
Q Consensus        23 ~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~  102 (434)
                      -++||||||+++.+++...+++..+.++++|+..+.+.|++.|+.-|--.+..++++|+.++|+|++.++..+.++.+|.
T Consensus        90 ~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGf  169 (451)
T KOG2615|consen   90 CLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGF  169 (451)
T ss_pred             hhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHhhcChhhccceeeeeehhhhcch
Confidence            38999999999999999999999999999999777777999999999888888899999999999999999999999999


Q ss_pred             HHHHHHHHHHhc---ccchHHHHHH----HHHHHHH-HHHHHHhcCCC
Q 013910          103 VSEAALAWIVMP---ILTWRWLLAL----SAIPAFV-LLIFIVFMPES  142 (434)
Q Consensus       103 ~l~~~l~~~~~~---~~~Wr~~f~~----~~i~~~l-~~~~~~~lpES  142 (434)
                      ++||.++..+..   ..+ +++|..    ..+.... ...+.+++||+
T Consensus       170 ilGPmIGgyla~f~~~~g-~~p~alP~~~v~i~a~~~v~~~~~~lpET  216 (451)
T KOG2615|consen  170 ILGPMIGGYLAQFSSISG-SYPFALPCLLVFILAAGDVTFFPWFLPET  216 (451)
T ss_pred             hhcchhhhHHHhhHhhhc-cCchHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            999999887654   111 122222    2222222 33445778998

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.63  E-value=5.1e-14  Score=135.79  Aligned_cols=121  Identities=14%  Similarity=0.156  Sum_probs=103.4

Q ss_pred             hhhhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCchhhhhhhhhccCCCcchhHHHHHHHHHHH
Q 013910           21 EPLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTF  100 (434)
Q Consensus        21 ~~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~  100 (434)
                      ..+++||+|-|+++.++.+.+++.+++.++++++..+.+.|++.|++.|+..+...++..|+|+++|+++.+....+..+
T Consensus        82 ~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~A~~syI~~WfP~kER~ratsi~~sg~~v  161 (511)
T TIGR00806        82 VFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARIAYSSYIFSLVPPSRYQRAAAYSRAAVLL  161 (511)
T ss_pred             HHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence            34699999999999999999999999999999999999999999999999876677899999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccchHHHHHHHHH---HHHHHHHHHHhcCCC
Q 013910          101 GSVSEAALAWIVMPILTWRWLLALSAI---PAFVLLIFIVFMPES  142 (434)
Q Consensus       101 G~~l~~~l~~~~~~~~~Wr~~f~~~~i---~~~l~~~~~~~lpES  142 (434)
                      |.+++++++.+ ....|||+.+-+.-+   ...+..+..+++|-.
T Consensus       162 G~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~  205 (511)
T TIGR00806       162 GVFLSSVLGQL-LVTLGWISYSTLNIISLVFMTFSVFLALFLKRP  205 (511)
T ss_pred             HHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            99999999888 456799997665533   222334455677833

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.63  E-value=2.3e-12  Score=127.88  Aligned_cols=330  Identities=17%  Similarity=0.213  Sum_probs=189.5

Q ss_pred             hHhhhcchHHHHHHHHHHH-HHHHHHhhc-cc-HHHHHHHHHHHHhcCCCchhh-hhhhhhccCCCcc------------
Q 013910           24 YFIFAFSRMSILGGALVTF-VAGLLSAFS-PN-YISLLILRGLAGAGLGSGHVF-FSWFMEFVPPSNR------------   87 (434)
Q Consensus        24 ~~~~~GRr~~l~~~~~~~~-i~~~~~~~~-~~-~~~l~~~R~l~Gig~g~~~~~-~~~~~E~~p~~~R------------   87 (434)
                      +.|+-||||-++....+.. ++++...+. ++ +....+.-++.-++.+...+. .+++-|.++++.+            
T Consensus        93 ~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~LP~la~~~~~~~~~~~~~~~~~  172 (477)
T PF11700_consen   93 IADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYLPDLARPEPRVRAAREPSANGN  172 (477)
T ss_pred             HHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChhhhhhhhhhccCC
Confidence            7898888877766555444 455555553 33 333333333333444444444 4678899999988            


Q ss_pred             --------------hhHHHHHHHHHHHHHHHHHHHHHHHh--c------ccchHHHHHHHHHHHHHH-HHHHHhcCCChh
Q 013910           88 --------------GKWMVVFSTFWTFGSVSEAALAWIVM--P------ILTWRWLLALSAIPAFVL-LIFIVFMPESPR  144 (434)
Q Consensus        88 --------------g~~~~~~~~~~~~G~~l~~~l~~~~~--~------~~~Wr~~f~~~~i~~~l~-~~~~~~lpESp~  144 (434)
                                    ++.++.-....++|.++.-.+...+.  .      ..+-|..+.+.++.-++. ++..+++||.|+
T Consensus       173 ~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~  252 (477)
T PF11700_consen  173 ISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLIVALWWLVFSIPLFLWLPDRPG  252 (477)
T ss_pred             CChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence                          89988877777777776655544431  1      234588888888775554 566777888775


Q ss_pred             HHhhcCChHHHHHHHHHHHHHcCCCCCCCCccCCCCCCCcccccCCCCccccccccccccccccccchhhhccCcchHHH
Q 013910          145 YLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKT  224 (434)
Q Consensus       145 ~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (434)
                      -...+....-.....+++.                                               +.++...+.+....
T Consensus       253 ~~~~~~~~~~~~~g~~~l~-----------------------------------------------~t~k~~~~~~~~~~  285 (477)
T PF11700_consen  253 PRPLPSGSSYLRFGFKRLW-----------------------------------------------RTFKEIRKLRQLFL  285 (477)
T ss_pred             CCCCCcchhHHHHHHHHHH-----------------------------------------------HHHHHHHhChHHHH
Confidence            1000000000011111110                                               01111111122222


Q ss_pred             HHHHHHHHH--HHHHHHHHHHHHHHhhhcccCCCCcccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchh--H
Q 013910          225 TILLWVLYF--GNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRK--L  300 (434)
Q Consensus       225 ~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR--~  300 (434)
                      .++.+.++.  .+.+...+..+....+               +.+..+.....++..+.+++|.++.+++.||+|.|  +
T Consensus       286 fLia~~l~~dg~~ti~~~~~i~a~~~l---------------g~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~  350 (477)
T PF11700_consen  286 FLIAYFLYSDGVNTIISFAGIYATEVL---------------GMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKR  350 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc---------------CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhH
Confidence            333333321  1222222222222111               12223444556777789999999999999999998  6


Q ss_pred             HHHHHHHHHHHH-HHHHH-h------hhhhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHhHHHHhhhHhHh
Q 013910          301 SMTIMFIFVCIF-LLPLV-T------LQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGM  372 (434)
Q Consensus       301 ~~~~~~~~~~~~-~~~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~  372 (434)
                      ++..+.+...+. +..+. .      ..+.+....+.....++..+..+..-.+.+|+.|+...+.-+|+-...++..++
T Consensus       351 ~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~  430 (477)
T PF11700_consen  351 TLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSW  430 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHH
Confidence            666654444322 22222 0      222333333322222333455778889999999999999999999999999999


Q ss_pred             hHHHHHHHHhhhcch-hhHHHHHHHHHHHHHHHHHhcccccCCcc
Q 013910          373 VCPLVAVGLVTSCHQ-TAAILLLEALIVLSVVVILLIPFETKGKE  416 (434)
Q Consensus       373 ~~p~~~~~l~~~~g~-~~~~~~~~~~~~i~~~~~~~~~~et~~~~  416 (434)
                      ++|.+++.+.+.+|+ ...+....++.+++.++. ...++.|+|.
T Consensus       431 lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll-~~v~~~~g~~  474 (477)
T PF11700_consen  431 LGPLLFGLITDATGSQRYGFLFLLVLFLIGLILL-FFVDVEKGRE  474 (477)
T ss_pred             HHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH-hhccchhhhh
Confidence            999999999888874 355555556556665555 5555777664

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.59  E-value=3.4e-14  Score=131.74  Aligned_cols=117  Identities=19%  Similarity=0.250  Sum_probs=105.5

Q ss_pred             hhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCc-chhHHHHHHHHHHH
Q 013910           23 LYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSN-RGKWMVVFSTFWTF  100 (434)
Q Consensus        23 ~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~-Rg~~~~~~~~~~~~  100 (434)
                      -++||+|+|-.++.+.+++..++++.++.++|++++++|.+||+|-+... +..+.+++.+|.+. ||+++|....+..+
T Consensus       128 ~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfisl  207 (464)
T KOG3764|consen  128 NLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISL  207 (464)
T ss_pred             hhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhc
Confidence            38999999999999999999999999999999999999999999987764 45677888888865 79999999999999


Q ss_pred             HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhc
Q 013910          101 GSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFM  139 (434)
Q Consensus       101 G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~~~~~l  139 (434)
                      |.++||+.++++-+..|.+.+|++.++..++-....+++
T Consensus       208 G~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~v  246 (464)
T KOG3764|consen  208 GVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLV  246 (464)
T ss_pred             cceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHhe
Confidence            999999999998888899999999998888877666654

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.56  E-value=9.4e-14  Score=143.14  Aligned_cols=121  Identities=16%  Similarity=0.225  Sum_probs=100.4

Q ss_pred             hhhHhhhcchHHHHHHHHHHHHHHHHHhhcc-------------------------------------------------
Q 013910           22 PLYFIFAFSRMSILGGALVTFVAGLLSAFSP-------------------------------------------------   52 (434)
Q Consensus        22 ~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~-------------------------------------------------   52 (434)
                      ..+.||+|||+.+.++.+++++++++.++.+                                                 
T Consensus        89 ~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~  168 (633)
T TIGR00805        89 SYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKE  168 (633)
T ss_pred             HHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCC
Confidence            3688999999999999999999999887652                                                 


Q ss_pred             --cHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhccc-------------
Q 013910           53 --NYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPIL-------------  116 (434)
Q Consensus        53 --~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~l~~~~~~~~-------------  116 (434)
                        .+..++++|+++|+|.+... ....|+.|++|+++|+++.++++.+..+|..++++++..+.+.+             
T Consensus       169 ~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l  248 (633)
T TIGR00805       169 SLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVIL  248 (633)
T ss_pred             CceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCC
Confidence              25678899999999998864 55678999999999999999999999999999998887654321             


Q ss_pred             ---------chHHHHHHHHHHHHHHHHHHHhcCCC
Q 013910          117 ---------TWRWLLALSAIPAFVLLIFIVFMPES  142 (434)
Q Consensus       117 ---------~Wr~~f~~~~i~~~l~~~~~~~lpES  142 (434)
                               .||..|.+.++..++..+..+++||.
T Consensus       249 ~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~~  283 (633)
T TIGR00805       249 TPTDPRWIGAWWIGFLICGGVALLTSIPFFFFPKA  283 (633)
T ss_pred             CCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence                     27888988888887776666667764

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.55  E-value=1.4e-11  Score=115.29  Aligned_cols=300  Identities=14%  Similarity=0.140  Sum_probs=188.2

Q ss_pred             hhhhHhhhcchHHHHHHHHHHHHHHHHHh---hcccHHHHHHHHHHHHhcCCCc-hhhhhhhhhccCCCcchhHHHHHHH
Q 013910           21 EPLYFIFAFSRMSILGGALVTFVAGLLSA---FSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFST   96 (434)
Q Consensus        21 ~~~~~~~~GRr~~l~~~~~~~~i~~~~~~---~~~~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~   96 (434)
                      .+.+.+|+|+|+.++++..+++++..+..   -..+|..++++=|+.|.|.|.- ....+|++-.-|++.-...+.+.|.
T Consensus        68 a~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~  147 (422)
T COG0738          68 AGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQA  147 (422)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHH
Confidence            44688999999999999999999998874   4568999999999999999985 4556788888888888888999999


Q ss_pred             HHHHHHHHHHHHHHHHhc-------------------ccchHHHHHHHHHHHHHHHHHHHh--cCCChhHHhhcCChHHH
Q 013910           97 FWTFGSVSEAALAWIVMP-------------------ILTWRWLLALSAIPAFVLLIFIVF--MPESPRYLCTKGRITDA  155 (434)
Q Consensus        97 ~~~~G~~l~~~l~~~~~~-------------------~~~Wr~~f~~~~i~~~l~~~~~~~--lpESp~~l~~~~~~~~a  155 (434)
                      +..+|.+++|.++..+..                   ...||+++...+...+++.+....  +||-+.           
T Consensus       148 fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~-----------  216 (422)
T COG0738         148 FNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQV-----------  216 (422)
T ss_pred             hhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCc-----------
Confidence            999999999988765432                   124777777766655555444332  222110           


Q ss_pred             HHHHHHHHHHcCCCCCCCCccCCCCCCCcccccCCCCccccccccccccccccccchhhhccCcchHHHHHHHHHHHHHH
Q 013910          156 HNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGN  235 (434)
Q Consensus       156 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  235 (434)
                                               ++.++              .++    + . ....++++.++.+.-.+..++|.+.
T Consensus       217 -------------------------~~~~~--------------~~~----~-~-~~~~~l~~~~~~~~gvl~~FlYVG~  251 (422)
T COG0738         217 -------------------------AAPSL--------------GAS----G-S-AGLSSLFQNKHLRLGVLAIFLYVGA  251 (422)
T ss_pred             -------------------------ccccc--------------ccc----c-c-chHHHHHhChHHHHHHHHHHHHHhH
Confidence                                     00000              000    0 0 0122344444444444555666655


Q ss_pred             HHHHHHHHHHHHhhhcccCCCCcccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHH
Q 013910          236 SFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLP  315 (434)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~  315 (434)
                      ....+.....   +..+.        ...+..+..-|..  ....+.++|.+++.+++.|+...+.+....++..+.++.
T Consensus       252 Eva~gsfl~~---y~~~~--------~g~~~~~aa~~~s--~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~  318 (422)
T COG0738         252 EVAIGSFLVS---YLEEL--------LGLNEQQAAYYLS--FFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLA  318 (422)
T ss_pred             HHHHHHHHHH---HHHhc--------CCccHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence            4443332221   11110        0001111222222  223566789999999999999999988877666666555


Q ss_pred             HHhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHH
Q 013910          316 LVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAIL  392 (434)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~  392 (434)
                      .....+.. ..........+....++..+....+..|.....  .|....++-+||.+.|.+.+.+.|..+....+.
T Consensus       319 ~~l~~g~v-~~~~l~~ig~F~simfPTIfslal~~l~~~ts~--~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~  392 (422)
T COG0738         319 VALIGGVV-ALYALFLIGLFNSIMFPTIFSLALKNLGEHTSV--GSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFL  392 (422)
T ss_pred             HHHhcChH-HHHHHHHHHHHhHHHHHHHHHHHHhccCccccc--cceeeeeheecchHHHHHHHHHHHhhhhHHHHH
Confidence            55444322 222233333455667888888888999843333  333344455788999999999988776544444

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.55  E-value=2.7e-12  Score=126.65  Aligned_cols=349  Identities=15%  Similarity=0.080  Sum_probs=181.6

Q ss_pred             hhhh---hhHh----hhcchHHHHHH-HHHHHHHHHHHhhcccHHHHH------------HHHHHHHh-----cCCCch-
Q 013910           19 LLEP---LYFI----FAFSRMSILGG-ALVTFVAGLLSAFSPNYISLL------------ILRGLAGA-----GLGSGH-   72 (434)
Q Consensus        19 ~~~~---~~~~----~~GRr~~l~~~-~~~~~i~~~~~~~~~~~~~l~------------~~R~l~Gi-----g~g~~~-   72 (434)
                      +.+|   .++|    |+|||+.+++. .....++..+.+++++...++            +.+++.|+     +..... 
T Consensus        54 i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~  133 (477)
T TIGR01301        54 LVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQG  133 (477)
T ss_pred             HHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555   5999    59999999886 444445556667776653222            13444443     332222 


Q ss_pred             hhhhhhhhccCCCcc--hhHHHHHHHHHHHHHHHHHHHHHHHh--cc-------------cchHHHHHHHHHHHHHHHH-
Q 013910           73 VFFSWFMEFVPPSNR--GKWMVVFSTFWTFGSVSEAALAWIVM--PI-------------LTWRWLLALSAIPAFVLLI-  134 (434)
Q Consensus        73 ~~~~~~~E~~p~~~R--g~~~~~~~~~~~~G~~l~~~l~~~~~--~~-------------~~Wr~~f~~~~i~~~l~~~-  134 (434)
                      ...+++.|.+|+++|  +...++.+.+..+|.++++.+++...  ..             .+-|+.|.+.++..++..+ 
T Consensus       134 p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~  213 (477)
T TIGR01301       134 PCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYI  213 (477)
T ss_pred             HHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHH
Confidence            234578899999865  67889999999999999998876531  10             1578999998877666544 


Q ss_pred             HHHhcCCChhHHhhcCChHHHHHHHHHHHHHcCCCCCCCCccCCCCCCCcccccCCCCccccccccccccccccccchhh
Q 013910          135 FIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFL  214 (434)
Q Consensus       135 ~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (434)
                      ..+..+|.|...  .+   +..+                       ++.++ .++.+..          ...++-+++++
T Consensus       214 t~~~v~E~~~~~--~~---~~~~-----------------------~~~~~-~~~~~~~----------~~~~~i~~~~~  254 (477)
T TIGR01301       214 ALSAVKENPLIG--SD---DFIN-----------------------SEAAP-PSKHGEE----------AFFGELFGAFK  254 (477)
T ss_pred             HeeeeeccCCCc--cc---cchh-----------------------hhccc-ccccchh----------hhHHHHHHHHH
Confidence            455688876310  00   0000                       00000 0000000          00001111111


Q ss_pred             hccCcchHHHHHH-HHHHHHHH-HHHHHHHHHHHHhhhcccCCCCcccccccCccch-h-HHHHHHHHHhhhhhHHHHHH
Q 013910          215 MLFSPRFFKTTIL-LWVLYFGN-SFVYYGIVLLASELSGSQSKCSSSILLSENVQDA-S-VYINVFITSFAELPGLLTAA  290 (434)
Q Consensus       215 ~~~~~~~~~~~~i-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~g~~~~~  290 (434)
                      .  -|+..++..+ ..+.|++. .+.+|...+....+........      ...++. . --...++.++...+..++-.
T Consensus       255 ~--mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~------~~y~~gvr~G~~~l~~~s~~~~i~s~~l~  326 (477)
T TIGR01301       255 Y--LPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQG------AKYDDGVRAGAFGLMLNSVVLGITSIGME  326 (477)
T ss_pred             H--CCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcch------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1  1333333322 22223221 1112222222222221111000      000000 0 01122333344444455566


Q ss_pred             HHHHhhch-hHHHHHHHHHHHHHHHHHHhhhh------h--------------HHHHHHHHHHH-HHHhhhhhhhhhhcc
Q 013910          291 LLVDRVGR-KLSMTIMFIFVCIFLLPLVTLQS------N--------------ILLTALLSGAR-MFSMGTFIIANIFAP  348 (434)
Q Consensus       291 ~l~dr~gR-R~~~~~~~~~~~~~~~~~~~~~~------~--------------~~~~~~~~~~~-~~~~~~~~~~~~~~~  348 (434)
                      .+.+|+|+ |.....+.++.++.+....+...      .              .+.....+... +.....+++.|.+.+
T Consensus       327 ~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s  406 (477)
T TIGR01301       327 KLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALAS  406 (477)
T ss_pred             HHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHH
Confidence            77888884 67767775555554443332110      0              11111111111 112234577888999


Q ss_pred             cccCCCch--hhHHhHHHHhhhHhHhhHHHHHHHHhhhcch--hhHHHHHHHHHHHHHHHHHhcccccCC
Q 013910          349 EIYPTSMR--STGAGVAYAVGRIGGMVCPLVAVGLVTSCHQ--TAAILLLEALIVLSVVVILLIPFETKG  414 (434)
Q Consensus       349 El~P~~~R--~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~--~~~~~~~~~~~~i~~~~~~~~~~et~~  414 (434)
                      +..|++.|  +..+|+.|.+-.+..++.....+.+.+..|.  ...+.+-++.++++++...++.|+++.
T Consensus       407 ~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~  476 (477)
T TIGR01301       407 IRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPRV  476 (477)
T ss_pred             HHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            99996545  8889999999888888777666665554442  244555667778999999999998864

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR01272 gluP glucose/galactose transporter

Probab=99.53  E-value=1.5e-11  Score=116.16  Aligned_cols=275  Identities=13%  Similarity=0.108  Sum_probs=156.0

Q ss_pred             hcccHHHHHHHHHHHHhcCCCc-hhhhhhhhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhc--------------
Q 013910           50 FSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMP--------------  114 (434)
Q Consensus        50 ~~~~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~l~~~~~~--------------  114 (434)
                      ...+|..++++-|+.|.|.+.. ....+|+++..|++++.+.+++.+.++.+|.+++|.++..+..              
T Consensus         6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~   85 (310)
T TIGR01272         6 SQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATAN   85 (310)
T ss_pred             HhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhh
Confidence            4578999999999999999885 4567899999999999999999999999999999999876542              


Q ss_pred             --ccchHHHHHHHHHHHHHHHHHHHh--cCCChhHHhhcCChHHHHHHHHHHHHHcCCCCCCCCccCCCCCCCcccccCC
Q 013910          115 --ILTWRWLLALSAIPAFVLLIFIVF--MPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTS  190 (434)
Q Consensus       115 --~~~Wr~~f~~~~i~~~l~~~~~~~--lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (434)
                        ..+||+++.+.+...++..+.+.+  +||.+.      +.++                             +.    .
T Consensus        86 ~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~------~~~~-----------------------------~~----~  126 (310)
T TIGR01272        86 AEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE------ADVA-----------------------------RV----S  126 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc------cccc-----------------------------cc----c
Confidence              147999999665554444333333  455311      0000                             00    0


Q ss_pred             CCccccccccccccccccccchhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccCccchh
Q 013910          191 EETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDAS  270 (434)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (434)
                      +++.     .++    +    .  .+..++... -.+..+.+.+.-.   +...|.+.+..+...        .+.+...
T Consensus       127 ~~~~-----~~~----~----~--~~~~~~~~l-~~~~~f~yvg~e~---~~~~w~~~yl~~~~~--------~g~s~~~  179 (310)
T TIGR01272       127 SGDT-----TQK----T----S--AFQFTHLVL-GALGIFVYVGAEV---SAGSFLVNFLSDPHA--------LGLPEDQ  179 (310)
T ss_pred             cccc-----cch----h----h--HHhhHHHHH-HHHHHHHHHHHHH---HHHHHHHHHHHhccc--------CCCCHHH
Confidence            0000     000    0    0  000011111 1111222222111   111122222110000        0011111


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccc
Q 013910          271 VYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEI  350 (434)
Q Consensus       271 ~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El  350 (434)
                      .-........+..+|.+++++++||+|+|+.+..+..++++..+............ ......++....++.......+.
T Consensus       180 a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~~-~~~l~g~~~s~i~P~~~s~a~~~  258 (310)
T TIGR01272       180 AAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVAMW-FVLALGLFNSIMFPTIFSLALNA  258 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHHHHHHHHHHHHHhh
Confidence            11122334456788999999999999999888776666655443332222221111 22222234445577777778888


Q ss_pred             cCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHH
Q 013910          351 YPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILL  393 (434)
Q Consensus       351 ~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~  393 (434)
                      +|.+ .+++.++. .++.+|+.+.|.+.+.+.|..+...++++
T Consensus       259 ~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v  299 (310)
T TIGR01272       259 LGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFAL  299 (310)
T ss_pred             hhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHH
Confidence            8765 34556664 67889999999999988887665555543

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00788 fbt folate/biopterin transporter

Probab=99.51  E-value=1.5e-12  Score=130.15  Aligned_cols=312  Identities=12%  Similarity=0.022  Sum_probs=167.3

Q ss_pred             hhHhhhc-----chHHHHHHHHHHH-HHHHHHhhcccHHHHHH-HHHHHHhcCCCc-hhhhhhhhhccCCCcchhHHHHH
Q 013910           23 LYFIFAF-----SRMSILGGALVTF-VAGLLSAFSPNYISLLI-LRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVF   94 (434)
Q Consensus        23 ~~~~~~G-----Rr~~l~~~~~~~~-i~~~~~~~~~~~~~l~~-~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~~   94 (434)
                      .++||++     ||+.++++.++.. +.....+..++...+.+ .+++.+++.+.. .+.-.+..|..+ ++++...+..
T Consensus        82 ~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~  160 (468)
T TIGR00788        82 VMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLV  160 (468)
T ss_pred             HHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCee
Confidence            4899998     7787777776663 33333344456555444 888888887664 345667889988 5554433333


Q ss_pred             HHH---HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcCCChhHHhhcCChHHHHHHHHHHHHHcCCCCC
Q 013910           95 STF---WTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLP  171 (434)
Q Consensus        95 ~~~---~~~G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~  171 (434)
                      ...   ..+|.++++.+++.+.+..+||..|++.++..++......++||++.....+.+.++ .               
T Consensus       161 s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~-~---------------  224 (468)
T TIGR00788       161 SWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYL-E---------------  224 (468)
T ss_pred             eHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhcccccccccccccccc-h---------------
Confidence            333   347999998888888777899999999887777665566778886421000000000 0               


Q ss_pred             CCCccCCCCCCCcccccCCCCccccccccccccccccccchhhhccC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013910          172 SGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFS-PRFFKTTILLWVLYFGNSFVYYGIVLLASELS  250 (434)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  250 (434)
                                 ........   ...+       ..++..+.....++ +..++......+.       |.    ..+...
T Consensus       225 -----------~~~~~~~~---~~~~-------~~~~~~~~l~~~l~~~~i~~~l~fifl~-------~~----~~~~~~  272 (468)
T TIGR00788       225 -----------MNMALLTL---GVLA-------NVKVQILGLRGAIQLLEIAKPLIFIFLS-------YA----NLPGAS  272 (468)
T ss_pred             -----------hhhhhhhh---hHHH-------HHHHHHHHHHHHHhcHHHHHHHHHHHHH-------Hh----hcCCCC
Confidence                       00000000   0000       00000111111122 2222211111110       00    000000


Q ss_pred             cccCCCCcccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHh----hh-----h
Q 013910          251 GSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT----LQ-----S  321 (434)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~----~~-----~  321 (434)
                      ...  .. ......+.+...........+++.++|..+.+.+.+|++.|+++.++.++..+.......    ..     .
T Consensus       273 ~~~--f~-~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~  349 (468)
T TIGR00788       273 GSV--FC-ATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGIS  349 (468)
T ss_pred             cee--EE-EEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCC
Confidence            000  00 000011112222233334455778888888888889999999998887776654432210    00     1


Q ss_pred             hH-HHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhhhcc
Q 013910          322 NI-LLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH  386 (434)
Q Consensus       322 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g  386 (434)
                      .. ..........+.....+.....+.+++.|++.+++++++.+++.++|+.+++.+.+.+.+..|
T Consensus       350 ~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       350 DEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             CeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            11 110100111111112234457788999999999999999999999999999987777776555

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK09669 putative symporter YagG; Provisional

Probab=99.49  E-value=2e-11  Score=121.60  Aligned_cols=293  Identities=12%  Similarity=0.036  Sum_probs=150.1

Q ss_pred             hhHhh----hcchHHHH-HHHHHHHHHHHHHhhccc------HHHHHHHHHHHHhcCCCch-hhhhhhhhcc-CCCcchh
Q 013910           23 LYFIF----AFSRMSIL-GGALVTFVAGLLSAFSPN------YISLLILRGLAGAGLGSGH-VFFSWFMEFV-PPSNRGK   89 (434)
Q Consensus        23 ~~~~~----~GRr~~l~-~~~~~~~i~~~~~~~~~~------~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~-p~~~Rg~   89 (434)
                      .++||    +|||+.++ .+.....++..+....++      ...+++.-++.+.+..... ...++..|.. ++++|++
T Consensus        67 ~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~  146 (444)
T PRK09669         67 ALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHS  146 (444)
T ss_pred             EeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHH
Confidence            36665    89966555 555666666554444443      3455566666665443322 2335677887 5588998


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH----h---cccchHHHHHHHHHHHHHHHHHH-HhcCCChhHHhhcCChHHHHHHHHH
Q 013910           90 WMVVFSTFWTFGSVSEAALAWIV----M---PILTWRWLLALSAIPAFVLLIFI-VFMPESPRYLCTKGRITDAHNILDK  161 (434)
Q Consensus        90 ~~~~~~~~~~~G~~l~~~l~~~~----~---~~~~Wr~~f~~~~i~~~l~~~~~-~~lpESp~~l~~~~~~~~a~~~l~~  161 (434)
                      ..++...+..+|..+++.+...+    .   +..+|+..+.+.++..++..+.. +..+|.++                 
T Consensus       147 l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~~~-----------------  209 (444)
T PRK09669        147 LQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKERYT-----------------  209 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEEecC-----------------
Confidence            88888877788777766543322    1   13579988887776665544332 23333210                 


Q ss_pred             HHHHcCCCCCCCCccCCCCCCCcccccCCCCccccccccccccccccccchhhhccCcchHHHHHHHHHHH-HHHHHHHH
Q 013910          162 IAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLY-FGNSFVYY  240 (434)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~  240 (434)
                               +            ++    .++.+              ..+.++..++.+.++......+.. ...... .
T Consensus       210 ---------~------------~~----~~~~~--------------~~~~~~~~~~n~~~~~l~~~~~~~~~~~~~~-~  249 (444)
T PRK09669        210 ---------P------------EV----DNSSS--------------VWKDLKLLLGNSQWRIMFIFNVVLLTAVVTR-G  249 (444)
T ss_pred             ---------C------------CC----cCCCC--------------HHHHHHHHhCCchHHHHHHHHHHHHHHHHHH-h
Confidence                     0            00    00000              001222333333322222221111 111100 0


Q ss_pred             HHHHHHHhhhcccCCCCcccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHh--
Q 013910          241 GIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT--  318 (434)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~--  318 (434)
                      +...+.....          +   +..+... .......+..+++..++++++||+|+|+.+..+.....+....+..  
T Consensus       250 ~~~~y~~~~~----------~---~~~~~~~-~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~  315 (444)
T PRK09669        250 GATLYYVNYV----------L---LRPDLAT-LFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIP  315 (444)
T ss_pred             hhhheeeeee----------c---CCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhC
Confidence            1100000000          0   0001111 1122333556678888899999999999888766544432222222  


Q ss_pred             hhhhHHHHHHHHHHHHHHhhhhhhhhhhcccccC-------CCchhhHHhHHHHhhhHhHhhHHHHHHHHhhhcc
Q 013910          319 LQSNILLTALLSGARMFSMGTFIIANIFAPEIYP-------TSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH  386 (434)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P-------~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g  386 (434)
                      ..+.+..........+......+..+.+.+|..+       .+..+...|+.+.+.++|..+++.+.+.+.+..|
T Consensus       316 ~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~G  390 (444)
T PRK09669        316 PSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVD  390 (444)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            1222222222222222233445677888888886       3344667888888899999999998887776443

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.48  E-value=2.8e-13  Score=136.54  Aligned_cols=142  Identities=17%  Similarity=-0.002  Sum_probs=104.3

Q ss_pred             hhhhHhhhcchHHHHHHHHHHHHHHH---HHhhcccHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHH-HH
Q 013910           21 EPLYFIFAFSRMSILGGALVTFVAGL---LSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVV-FS   95 (434)
Q Consensus        21 ~~~~~~~~GRr~~l~~~~~~~~i~~~---~~~~~~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~-~~   95 (434)
                      .+...||+|||+.+..+.+...+...   ....+++...++++|++.|++.+... ....++.|.+|++.||...++ ++
T Consensus       306 ~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~  385 (490)
T PRK10642        306 MGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFN  385 (490)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHH
Confidence            45789999999998887765443332   22335667888999999988765432 344567799999999998886 66


Q ss_pred             HHHHHHHHHHHHHHHHHhc-ccchHHHHHHHHHHHHHHHHHHHhcCCChhHHhhc-----CChHHHHHHHHHHH
Q 013910           96 TFWTFGSVSEAALAWIVMP-ILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTK-----GRITDAHNILDKIA  163 (434)
Q Consensus        96 ~~~~~G~~l~~~l~~~~~~-~~~Wr~~f~~~~i~~~l~~~~~~~lpESp~~l~~~-----~~~~~a~~~l~~~~  163 (434)
                      .+...| .+++.+...+.+ ..+|+.++++..+++++..+..+++||||+|+.+|     ||.|||.+.+++++
T Consensus       386 ~~~~~g-~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~pes~~~~~~~~~~~~~~~~~a~~~l~~~~  458 (490)
T PRK10642        386 ISVLVA-GLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMKETANRPLKGATPAASDIQEAKEILVEHY  458 (490)
T ss_pred             HHHHHH-HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccCCCCCCccccccchhhHHHHhhccc
Confidence            665554 455555444443 34688888877777777777777789999999865     99999999999875

>PRK11462 putative transporter; Provisional

Probab=99.43  E-value=1.7e-10  Score=115.24  Aligned_cols=108  Identities=15%  Similarity=0.004  Sum_probs=67.4

Q ss_pred             hhcchHHHHHHH-HHHHHHHHHHhhccc------HHHHHHHHHHHHhcCCCchh-hhhhhhhccC-CCcchhHHHHHHHH
Q 013910           27 FAFSRMSILGGA-LVTFVAGLLSAFSPN------YISLLILRGLAGAGLGSGHV-FFSWFMEFVP-PSNRGKWMVVFSTF   97 (434)
Q Consensus        27 ~~GRr~~l~~~~-~~~~i~~~~~~~~~~------~~~l~~~R~l~Gig~g~~~~-~~~~~~E~~p-~~~Rg~~~~~~~~~   97 (434)
                      |+|||+..++.. ....++..+.-..|+      ...+.+.-++..++.....+ ..++..|.++ +++|.+..++...+
T Consensus        75 r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~  154 (460)
T PRK11462         75 RWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVL  154 (460)
T ss_pred             CCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            789998777544 555555554433442      23344455555554433322 2345678888 78999999999999


Q ss_pred             HHHHHHHHHHHHHHHhc-------ccchHHHHHHHHHHHHHHHH
Q 013910           98 WTFGSVSEAALAWIVMP-------ILTWRWLLALSAIPAFVLLI  134 (434)
Q Consensus        98 ~~~G~~l~~~l~~~~~~-------~~~Wr~~f~~~~i~~~l~~~  134 (434)
                      ..+|..+++.+...+..       ..+|+....+.+++.++...
T Consensus       155 ~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~  198 (460)
T PRK11462        155 ATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLA  198 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHH
Confidence            88888777666443221       13688877777766555443

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.43  E-value=4e-10  Score=104.07  Aligned_cols=312  Identities=20%  Similarity=0.180  Sum_probs=194.3

Q ss_pred             hhhhhhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCchhh-hhhhhhccCCCcchhHHHHHHHH
Q 013910           19 LLEPLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVF-FSWFMEFVPPSNRGKWMVVFSTF   97 (434)
Q Consensus        19 ~~~~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~~~~-~~~~~E~~p~~~Rg~~~~~~~~~   97 (434)
                      +..|....|+|-++.+..+.++..++.++-... +...++.+-.+.|.|++...+. ..++=|.+|+ +-|.++++|...
T Consensus        65 p~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk-~~~~mtglYs~s  142 (395)
T COG2807          65 PAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPK-RVGLMTGLYSTS  142 (395)
T ss_pred             hhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhccc-chhhHHhHHHHH
Confidence            356678889999999999999999999888777 7888999999999999887654 4566677754 668899999999


Q ss_pred             HHHHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHHHHHHHhcCCChhHHhhcCChHHHHHHHHHHHHHcCCCCCCCCcc
Q 013910           98 WTFGSVSEAALAWIVMPIL-TWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLT  176 (434)
Q Consensus        98 ~~~G~~l~~~l~~~~~~~~-~Wr~~f~~~~i~~~l~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~  176 (434)
                      ...|..+++.++..+.++. +||....+=++++++.++.++  |...|.     +.               .        
T Consensus       143 l~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~Wl--Pq~~r~-----~~---------------~--------  192 (395)
T COG2807         143 LGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWL--PQALRE-----QA---------------A--------  192 (395)
T ss_pred             HHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHh--hhcccc-----cc---------------c--------
Confidence            9999999998887776655 799999998889888766554  322210     00               0        


Q ss_pred             CCCCCCCcccccCCCCccccccccccccccccccchhhhccC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 013910          177 SDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFS-PRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSK  255 (434)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (434)
                             ..    ..+          .   +    +...+++ +.-++    +...+..+++.||...-|.|.+..+.. 
T Consensus       193 -------~~----~~~----------~---~----~~~~vw~~~~aW~----vtLfmGlqS~~~Y~~~~WLP~ili~~G-  239 (395)
T COG2807         193 -------SI----ATK----------L---V----SVRKVWRSPLAWQ----VTLFMGLQSLLYYIVIGWLPAILIDRG-  239 (395)
T ss_pred             -------cc----ccc----------c---c----cccccccCchhHH----HHHHHHhhHHHHHHHHHHHHHHHHHcC-
Confidence                   00    000          0   0    0001221 21221    223334578888988888887764432 


Q ss_pred             CCcccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhh-chhHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHH
Q 013910          256 CSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRV-GRKLSMTIMFIFVCIFLLPLVT-LQSNILLTALLSGAR  333 (434)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~-gRR~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  333 (434)
                                .+........-+..+.+++..+....+.+|. .+|+..+.....+.+....+.+ ..+..+...+.+  .
T Consensus       240 ----------~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw~~ll--G  307 (395)
T COG2807         240 ----------LSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILWALLL--G  307 (395)
T ss_pred             ----------CCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH--h
Confidence                      1111122233355677889999999999975 4555554443333333333322 222222221111  1


Q ss_pred             HHHhhhhhhhhhhcccccCC-CchhhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhH-HHHHHHHHHHHHHHHHh
Q 013910          334 MFSMGTFIIANIFAPEIYPT-SMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAA-ILLLEALIVLSVVVILL  407 (434)
Q Consensus       334 ~~~~~~~~~~~~~~~El~P~-~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~-~~~~~~~~~i~~~~~~~  407 (434)
                      +...+.+++.-.....-.++ +..+.=.|....+|++-+..+|.+++++.|.+|+... ...++.+.++..+..+.
T Consensus       308 ~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl~  383 (395)
T COG2807         308 LGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGLR  383 (395)
T ss_pred             CccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHhh
Confidence            11223455444444444444 3345557888889999999999999999998886533 33444444444444433

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.42  E-value=4.5e-11  Score=118.42  Aligned_cols=293  Identities=18%  Similarity=0.169  Sum_probs=165.9

Q ss_pred             hhHh----hhcchHHHHH-HHHHHHHHHHHHhhc-c-------cHHHHHHHHHHHHhcCCCchhh-hhhhhhccC-CCcc
Q 013910           23 LYFI----FAFSRMSILG-GALVTFVAGLLSAFS-P-------NYISLLILRGLAGAGLGSGHVF-FSWFMEFVP-PSNR   87 (434)
Q Consensus        23 ~~~~----~~GRr~~l~~-~~~~~~i~~~~~~~~-~-------~~~~l~~~R~l~Gig~g~~~~~-~~~~~E~~p-~~~R   87 (434)
                      .++|    |+|||+.+++ +.....++..+.... |       ....+.+.-++..++.....+. .++..|.++ +++|
T Consensus        59 ~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R  138 (428)
T PF13347_consen   59 YLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDER  138 (428)
T ss_pred             EEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhh
Confidence            3677    8998887765 555555655555544 4       1233566666666665554333 456789998 5789


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHh----cc---cchHHHHHHHHHHHHHHHHH-HHhcCCChhHHhhcCChHHHHHHH
Q 013910           88 GKWMVVFSTFWTFGSVSEAALAWIVM----PI---LTWRWLLALSAIPAFVLLIF-IVFMPESPRYLCTKGRITDAHNIL  159 (434)
Q Consensus        88 g~~~~~~~~~~~~G~~l~~~l~~~~~----~~---~~Wr~~f~~~~i~~~l~~~~-~~~lpESp~~l~~~~~~~~a~~~l  159 (434)
                      .+..+.-+.+..+|.++.+.+...+.    +.   .+|++...+.++..++..+. .+..+|.++      +.+      
T Consensus       139 ~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~------~~~------  206 (428)
T PF13347_consen  139 TRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSV------EVT------  206 (428)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeeccc------ccc------
Confidence            99999998888888876555544432    11   27999999888877765443 445666110      000      


Q ss_pred             HHHHHHcCCCCCCCCccCCCCCCCcccccCCCCccccccccccccccccccchhhhccCcchHHHHHHHHH-HHHHHHHH
Q 013910          160 DKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWV-LYFGNSFV  238 (434)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~  238 (434)
                                              ++    .++.+              ..+.++..++.|.......... .++.+...
T Consensus       207 ------------------------~~----~~~~~--------------~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~  244 (428)
T PF13347_consen  207 ------------------------EQ----EKKIS--------------LRDSLRSLFRNRPFRILLLAFFLQWLAFALM  244 (428)
T ss_pred             ------------------------cc----ccccc--------------cccchhhhcccchHHHHHHHHHHHHhhhhhh
Confidence                                    00    00000              0012233343333332222222 22222211


Q ss_pred             HHHHHHHHHhhhcccCCCCcccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHh
Q 013910          239 YYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT  318 (434)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~  318 (434)
                      .....++.......              .+. .-....+..+..+++..+.++++||+|+|+.+..+..+.++....+.+
T Consensus       245 ~~~~~y~~~~vl~~--------------~~~-~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~  309 (428)
T PF13347_consen  245 NTFLPYYFTYVLGN--------------EGL-ISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFF  309 (428)
T ss_pred             hhHHHHHHHHHhcC--------------chh-hHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHH
Confidence            11111112111111              000 011223445667888899999999999999998888777766555444


Q ss_pred             hh--hhHHHHHHHHHHHHHHhhhhhhhhhhcccccCC-------CchhhHHhHHHHhhhHhHhhHHHHHHHHhhh
Q 013910          319 LQ--SNILLTALLSGARMFSMGTFIIANIFAPEIYPT-------SMRSTGAGVAYAVGRIGGMVCPLVAVGLVTS  384 (434)
Q Consensus       319 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~-------~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~  384 (434)
                      ..  +.+................+...+.+.+|+.+.       +..+.-.|+.+...+++..+++.+.+.+++.
T Consensus       310 ~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~  384 (428)
T PF13347_consen  310 LGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLAL  384 (428)
T ss_pred             HHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence            32  333333333333333334456778888888873       3447778888888999998888888766543

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.40  E-value=1.1e-10  Score=117.17  Aligned_cols=109  Identities=15%  Similarity=0.083  Sum_probs=67.7

Q ss_pred             HHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHh-----hhhhHHHHHHHHHHHHHHhhhhhhhhhhccccc
Q 013910          277 ITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT-----LQSNILLTALLSGARMFSMGTFIIANIFAPEIY  351 (434)
Q Consensus       277 ~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~  351 (434)
                      +..+..+++..+.++++||+|+|+.+..+..+..+..+....     ..+.+..........+.........+.+.+|..
T Consensus       274 ~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~i  353 (473)
T PRK10429        274 YAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTV  353 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            344667888889999999999999987766554433222211     111122211111111222334556778888884


Q ss_pred             C-----CCch--hhHHhHHHHhhhHhHhhHHHHHHHHhhhc
Q 013910          352 P-----TSMR--STGAGVAYAVGRIGGMVCPLVAVGLVTSC  385 (434)
Q Consensus       352 P-----~~~R--~~a~gi~~~~~~ig~~~~p~~~~~l~~~~  385 (434)
                      +     +..|  +..+|....+.+++..+++.+.+.+.+..
T Consensus       354 d~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~  394 (473)
T PRK10429        354 DYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLI  394 (473)
T ss_pred             hhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            4     4444  55678888889999999998888777543

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.33  E-value=1.1e-09  Score=103.47  Aligned_cols=327  Identities=17%  Similarity=0.188  Sum_probs=189.1

Q ss_pred             hhHhhhcchHHHHHH-HHHHHHHHHHHhhccc--H-HHHHHHHHHHHhcCCCchhh-hhhhhhccCCCcchhHHHHHHHH
Q 013910           23 LYFIFAFSRMSILGG-ALVTFVAGLLSAFSPN--Y-ISLLILRGLAGAGLGSGHVF-FSWFMEFVPPSNRGKWMVVFSTF   97 (434)
Q Consensus        23 ~~~~~~GRr~~l~~~-~~~~~i~~~~~~~~~~--~-~~l~~~R~l~Gig~g~~~~~-~~~~~E~~p~~~Rg~~~~~~~~~   97 (434)
                      ...|..|+||-.+-. ..+.++++++..++++  + ....+.-++..++.....+. .+++....++++-|+.+++--..
T Consensus        80 ~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~~~riS~lg~~~  159 (438)
T COG2270          80 TIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDNMGRISGLGWAL  159 (438)
T ss_pred             hhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccccCccccccccc
Confidence            378998887665544 4444556666677665  3 34455555666666655554 46777888998888887664444


Q ss_pred             HHHHHHHHHHHHHH--H-h---------------cccchHHHHHHHHHHHHHH-HHHHHhcCCChhHHhhcCChHH-HHH
Q 013910           98 WTFGSVSEAALAWI--V-M---------------PILTWRWLLALSAIPAFVL-LIFIVFMPESPRYLCTKGRITD-AHN  157 (434)
Q Consensus        98 ~~~G~~l~~~l~~~--~-~---------------~~~~Wr~~f~~~~i~~~l~-~~~~~~lpESp~~l~~~~~~~~-a~~  157 (434)
                      -.+|.++.-.....  . .               +...=|..+.+.++.-++. +++++..||-++   .+..... -.+
T Consensus       160 gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~~v~~~~~---~~~~~~~~l~~  236 (438)
T COG2270         160 GYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMILNVHDAEK---ISSPPPTALRN  236 (438)
T ss_pred             ccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHHhccccccc---ccccchHHHHH
Confidence            44555443322211  1 1               2235788888887765555 455566665543   0000000 000


Q ss_pred             HHHHHHHHcCCCCCCCCccCCCCCCCcccccCCCCccccccccccccccccccchhhhccCcchHHHHHHHHHHHH--HH
Q 013910          158 ILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYF--GN  235 (434)
Q Consensus       158 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~  235 (434)
                      ..+++                                               +.++++.+..+.....++....+.  .|
T Consensus       237 g~k~L-----------------------------------------------~~t~k~i~~~~~i~~FLiA~~~~~DGv~  269 (438)
T COG2270         237 GFKEL-----------------------------------------------KSTFKEIRGRKNLVLFLIARFFYIDGVN  269 (438)
T ss_pred             HHHHH-----------------------------------------------HHHHHHHhcccchHHHHHHHHHHHhhHH
Confidence            01110                                               112223332233333333333221  23


Q ss_pred             HHHHHHHHHHHHhhhcccCCCCcccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHH
Q 013910          236 SFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLP  315 (434)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~  315 (434)
                      ...-.+..+-...+               +.++.+.....+..++.+++|+++++++.||+|-|+++.++.++..+..+.
T Consensus       270 til~~~~~fg~~~~---------------gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~  334 (438)
T COG2270         270 TILAMGGVFGAADL---------------GLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALY  334 (438)
T ss_pred             HHHHHHHHHHHHHc---------------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHH
Confidence            33333332222222               233456667777888999999999999999999999888877766655544


Q ss_pred             HHhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhhhcchh-hHHHHH
Q 013910          316 LVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQT-AAILLL  394 (434)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~-~~~~~~  394 (434)
                      ..+.........+-.....+..+..+..-.+.+++.|++.-+..+|+-+..++..++++|+.+..+.+.+|.. ..+..+
T Consensus       335 ~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i  414 (438)
T COG2270         335 LIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSI  414 (438)
T ss_pred             HHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHH
Confidence            4443322222222111112233556788899999999999999999999999999999999999888877753 344444


Q ss_pred             HHHHHHHHHHHHhcccccCCc
Q 013910          395 EALIVLSVVVILLIPFETKGK  415 (434)
Q Consensus       395 ~~~~~i~~~~~~~~~~et~~~  415 (434)
                      ..+..++.++.... |+.+.+
T Consensus       415 ~vll~iGl~~L~~v-~~~~~~  434 (438)
T COG2270         415 IVLLLIGLLLLLRV-KVPGRR  434 (438)
T ss_pred             HHHHHhhHhhEEee-cCCCCc
Confidence            45555554444444 444333

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.32  E-value=1.6e-08  Score=98.69  Aligned_cols=112  Identities=17%  Similarity=0.191  Sum_probs=76.3

Q ss_pred             HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHH----HHHHhhhhhhhhhhcccc
Q 013910          276 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTL-QSNILLTALLSGA----RMFSMGTFIIANIFAPEI  350 (434)
Q Consensus       276 ~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~El  350 (434)
                      .+..+.+++-....+.+..|+|-|++++++.+...+=....... ++.+.........    .......+.....+..|.
T Consensus       250 ~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~  329 (400)
T PF03825_consen  250 ALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRI  329 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Confidence            35567888999999999999999999988876665522222222 2222222221111    011112344566788999


Q ss_pred             cCCCchhhHHhHHHHhh-hHhHhhHHHHHHHHhhhcch
Q 013910          351 YPTSMRSTGAGVAYAVG-RIGGMVCPLVAVGLVTSCHQ  387 (434)
Q Consensus       351 ~P~~~R~~a~gi~~~~~-~ig~~~~p~~~~~l~~~~g~  387 (434)
                      .|++.|+++.++.+... .+|+.++.++.+.+.|..+.
T Consensus       330 ~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~  367 (400)
T PF03825_consen  330 APPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGA  367 (400)
T ss_pred             CCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcc
Confidence            99999999999988864 58999999999999987653

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.31  E-value=3.2e-09  Score=102.10  Aligned_cols=140  Identities=11%  Similarity=0.092  Sum_probs=92.0

Q ss_pred             HHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCch
Q 013910          277 ITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMR  356 (434)
Q Consensus       277 ~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R  356 (434)
                      +..+.+++...+..++.+|+|-|+.++++..+..+=.+......+++.....-..-..-.-.......-|.++.+|++..
T Consensus       267 ~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rls  346 (412)
T PF01306_consen  267 VQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLS  346 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGH
T ss_pred             HHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHH
Confidence            33467888899999999999999999988777665444434333333322211111000011122345578899999999


Q ss_pred             hhHHhHHHHh-hhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccCCcc
Q 013910          357 STGAGVAYAV-GRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKE  416 (434)
Q Consensus       357 ~~a~gi~~~~-~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~et~~~~  416 (434)
                      ++...+...+ ..++.++.+...+.+.|..|....+++++.+.+...++..+..+..+...
T Consensus       347 At~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~~~  407 (412)
T PF01306_consen  347 ATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKKQI  407 (412)
T ss_dssp             HHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSSTT
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCccc
Confidence            9999997655 45888888888999999988777888888888877777777765555433

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.29  E-value=3.5e-11  Score=98.98  Aligned_cols=122  Identities=23%  Similarity=0.289  Sum_probs=103.3

Q ss_pred             hhhhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHHHHHHHH
Q 013910           21 EPLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWT   99 (434)
Q Consensus        21 ~~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~   99 (434)
                      .+...||+|||+.+..+.....++.+...+.+++..+.+.+++.|++.+... ....+..|..|+++|++..+..+....
T Consensus        18 ~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (141)
T TIGR00880        18 SGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIA   97 (141)
T ss_pred             HHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHH
Confidence            3467899999999999999999888888888999999999999999887653 455678899999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH-HHhcCCC
Q 013910          100 FGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIF-IVFMPES  142 (434)
Q Consensus       100 ~G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~~-~~~lpES  142 (434)
                      +|..+++.+...+.+..+||+.+.+.++..++..+. .+..||+
T Consensus        98 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (141)
T TIGR00880        98 LGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET  141 (141)
T ss_pred             HHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence            999999999888888889999999887776665444 4445653

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.29  E-value=1.5e-08  Score=100.84  Aligned_cols=111  Identities=16%  Similarity=0.132  Sum_probs=83.4

Q ss_pred             hhhhhHhhh-cchHHHHHHHHHHHHHHHHHhhcc-cHHHHHHHHHHHHhcCCCc-hhhhhhhhhccCCC--cchhHHHHH
Q 013910           20 LEPLYFIFA-FSRMSILGGALVTFVAGLLSAFSP-NYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPS--NRGKWMVVF   94 (434)
Q Consensus        20 ~~~~~~~~~-GRr~~l~~~~~~~~i~~~~~~~~~-~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~--~Rg~~~~~~   94 (434)
                      +-.+..||+ |||+++.++.++..++.++.+... +...++++-.+.++|.|.. ....+++.|.+|++  +|....+++
T Consensus        64 igG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~  143 (493)
T PRK15462         64 LGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLM  143 (493)
T ss_pred             HHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHH
Confidence            344789999 999999999999988877666543 2233444433444455543 23456789999986  798899999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Q 013910           95 STFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAF  130 (434)
Q Consensus        95 ~~~~~~G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~  130 (434)
                      ....++|..+++.+...+.+..|||+.|.+.++..+
T Consensus       144 Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~  179 (493)
T PRK15462        144 YAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMI  179 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHH
Confidence            999999999999999888888899999998766433

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.24  E-value=5.7e-09  Score=101.43  Aligned_cols=292  Identities=16%  Similarity=0.109  Sum_probs=160.5

Q ss_pred             hhcchHHHHHHH-HHHHHHHHHHhhccc------HHHHHHHHHHHHhcCCCchhh-hhhhhhccC-CCcchhHHHHHHHH
Q 013910           27 FAFSRMSILGGA-LVTFVAGLLSAFSPN------YISLLILRGLAGAGLGSGHVF-FSWFMEFVP-PSNRGKWMVVFSTF   97 (434)
Q Consensus        27 ~~GRr~~l~~~~-~~~~i~~~~~~~~~~------~~~l~~~R~l~Gig~g~~~~~-~~~~~E~~p-~~~Rg~~~~~~~~~   97 (434)
                      |+|||+-+++.. +..++...++-.+++      ....++.-.+.|++.....+. .++..|.++ ++||.+..++-+.+
T Consensus        78 r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~  157 (467)
T COG2211          78 RWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVF  157 (467)
T ss_pred             ccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHH
Confidence            899988776655 666677766666653      344556666666665443222 234556665 47899999999999


Q ss_pred             HHHHHHHHHHHHHHH----hc---ccchHHHHHHHHHHHHHHHHHH-HhcCCChhHHhhcCChHHHHHHHHHHHHHcCCC
Q 013910           98 WTFGSVSEAALAWIV----MP---ILTWRWLLALSAIPAFVLLIFI-VFMPESPRYLCTKGRITDAHNILDKIAQFNQTS  169 (434)
Q Consensus        98 ~~~G~~l~~~l~~~~----~~---~~~Wr~~f~~~~i~~~l~~~~~-~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~  169 (434)
                      ..+|.++...+...+    .+   ..|||..-.+.++.+++..+.. +...|.+.         ++              
T Consensus       158 ~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~---------~~--------------  214 (467)
T COG2211         158 ASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVV---------ET--------------  214 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccC---------cc--------------
Confidence            999987766554333    22   4589998888777776654433 33433321         00              


Q ss_pred             CCCCCccCCCCCCCcccccCCCCccccccccccccccccccchhhhccCcchHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Q 013910          170 LPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYF-GNSFVYYGIVLLASE  248 (434)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~  248 (434)
                                    +     .++...          +++...++...++.|-++..+++....+ ..++.--...++...
T Consensus       215 --------------~-----~~~~~~----------~~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y  265 (467)
T COG2211         215 --------------Q-----PTKTGV----------KLKLKDSFLLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTY  265 (467)
T ss_pred             --------------c-----cCcccc----------cccHHHHHHHHHccchHHHHHHHHHHHHHHHHHHhhhhheeEEE
Confidence                          0     000000          0000012333443333222222222111 111111000111100


Q ss_pred             hhcccCCCCcccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhh--hHHHH
Q 013910          249 LSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQS--NILLT  326 (434)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~--~~~~~  326 (434)
                      .              .+..+...+..........+.+.++...+++|+|+|+++..+.++..+....+.+...  .....
T Consensus       266 ~--------------lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~  331 (467)
T COG2211         266 V--------------LGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIV  331 (467)
T ss_pred             E--------------cCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHH
Confidence            0              1122233334444555666677889999999999999999987777766555544332  22222


Q ss_pred             HHHHHHHHHHhhhhhhhhhhcccccC-----CCch--hhHHhHHHHhhhHhHhhHHHHHHHHhhh
Q 013910          327 ALLSGARMFSMGTFIIANIFAPEIYP-----TSMR--STGAGVAYAVGRIGGMVCPLVAVGLVTS  384 (434)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~El~P-----~~~R--~~a~gi~~~~~~ig~~~~p~~~~~l~~~  384 (434)
                      +.............++.|++.+|+..     |..|  +...|+..++.++|..++.++.+.++..
T Consensus       332 ~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~  396 (467)
T COG2211         332 VALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGA  396 (467)
T ss_pred             HHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22233333334456778888886654     3334  6667888888999988888888776643

>PRK09848 glucuronide transporter; Provisional

Probab=99.19  E-value=1.1e-08  Score=101.98  Aligned_cols=106  Identities=9%  Similarity=0.004  Sum_probs=67.8

Q ss_pred             hhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhh-hh-HHHHHHHHHHHHHHhhhhhhhhhhcccccCC----
Q 013910          280 FAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQ-SN-ILLTALLSGARMFSMGTFIIANIFAPEIYPT----  353 (434)
Q Consensus       280 ~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~----  353 (434)
                      +..+++..+.+.+.||+|+|+.+..+.++..+..+.+.+.. .+ +..........+......+..+...+|..|.    
T Consensus       275 ~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~  354 (448)
T PRK09848        275 VGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYL  354 (448)
T ss_pred             HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHh
Confidence            45667888889999999999999887766554433333221 12 2111111111122223345567777777764    


Q ss_pred             ---CchhhHHhHHHHhhhHhHhhHHHHHHHHhhhc
Q 013910          354 ---SMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSC  385 (434)
Q Consensus       354 ---~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~  385 (434)
                         +.++...|+.+...++|..+++.+.+.+.+..
T Consensus       355 ~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~  389 (448)
T PRK09848        355 TGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLS  389 (448)
T ss_pred             hCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence               35688899999999999999988887766543

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.19  E-value=5.2e-09  Score=105.12  Aligned_cols=181  Identities=13%  Similarity=0.193  Sum_probs=104.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchh
Q 013910          220 RFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRK  299 (434)
Q Consensus       220 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR  299 (434)
                      ++++.....+..++...+..++...+.+.+..+.           +.+............++..++.+++|+++||+|||
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r  101 (476)
T PLN00028         33 PHMRAFHLSWISFFTCFVSTFAAAPLLPIIRDNL-----------NLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPR  101 (476)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh
Confidence            4445555555555555555554444434343221           11111111222334456778899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHH
Q 013910          300 LSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAV  379 (434)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~  379 (434)
                      +.+..+.++.++..+......+........+...++ .+.......+.+|.+|++.|+++.|+.+..+.+|+.+++.+.+
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~-~~~~~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~  180 (476)
T PLN00028        102 YGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFS-LATFVSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMP  180 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHH
Confidence            988887766665554443332222221111111111 2222333446789999999999999999888888877776665


Q ss_pred             HHhh----h-----cchhhHHHHHHHHHHHHHHHHHhccccc
Q 013910          380 GLVT----S-----CHQTAAILLLEALIVLSVVVILLIPFET  412 (434)
Q Consensus       380 ~l~~----~-----~g~~~~~~~~~~~~~i~~~~~~~~~~et  412 (434)
                      .+..    .     .+....+++.++++++..+..++++++.
T Consensus       181 ~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~  222 (476)
T PLN00028        181 LVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDL  222 (476)
T ss_pred             HHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcC
Confidence            4422    1     2344566777777776666666665443

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.16  E-value=1.1e-09  Score=90.02  Aligned_cols=133  Identities=18%  Similarity=0.186  Sum_probs=93.4

Q ss_pred             hhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhH
Q 013910          280 FAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTG  359 (434)
Q Consensus       280 ~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~a  359 (434)
                      +..+++....+++.||+|||+.+..+.....+..+......+.+.................+..+.+..|.+|++.|+++
T Consensus         9 ~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (141)
T TIGR00880         9 LGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVA   88 (141)
T ss_pred             hHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHH
Confidence            44566778889999999999998877666655544433323222222222222222223355677888999999999999


Q ss_pred             HhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhccccc
Q 013910          360 AGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFET  412 (434)
Q Consensus       360 ~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~et  412 (434)
                      .++.+....++..++|.+.+.+.+..+....+.+.+.+.+++.+..+++.||+
T Consensus        89 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (141)
T TIGR00880        89 LGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET  141 (141)
T ss_pred             HHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence            99999999999999999998877765555566677777777777777777664

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.11  E-value=4.5e-09  Score=102.28  Aligned_cols=141  Identities=19%  Similarity=0.133  Sum_probs=98.4

Q ss_pred             HHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCC
Q 013910          275 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTS  354 (434)
Q Consensus       275 ~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~  354 (434)
                      .....+...++.++.|.++||+|||+.+..+..+..+..+......+.+......+...+......+....+..|.+|++
T Consensus        46 ~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~  125 (385)
T TIGR00710        46 LTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGE  125 (385)
T ss_pred             HHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcH
Confidence            33445667888999999999999999998877666655554443332222222111111122223455677889999999


Q ss_pred             chhhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccCCc
Q 013910          355 MRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGK  415 (434)
Q Consensus       355 ~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~et~~~  415 (434)
                      .|+++.|+.+....++..++|.+.+.+.+..+....+++.+...++..+..++..||++.+
T Consensus       126 ~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (385)
T TIGR00710       126 ELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLPY  186 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence            9999999999999999999999888777766656666666777777766666666777544

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.08  E-value=1.2e-08  Score=100.46  Aligned_cols=137  Identities=9%  Similarity=-0.027  Sum_probs=93.1

Q ss_pred             HHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCch
Q 013910          277 ITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMR  356 (434)
Q Consensus       277 ~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R  356 (434)
                      ...++..++.+..++++||+|||+.+..+.++..+.........+.......-+...+...+..+....+.+|.+|++.|
T Consensus        51 ~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r  130 (412)
T TIGR02332        51 LFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFR  130 (412)
T ss_pred             HHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHH
Confidence            33456677888899999999999998887777665554444333222222211121122223345556778999999999


Q ss_pred             hhHHhHHHHhhhHhHhhHHHHHHHHhhh------cchhhHHHHHHHHHHHHHHHHHhcccccC
Q 013910          357 STGAGVAYAVGRIGGMVCPLVAVGLVTS------CHQTAAILLLEALIVLSVVVILLIPFETK  413 (434)
Q Consensus       357 ~~a~gi~~~~~~ig~~~~p~~~~~l~~~------~g~~~~~~~~~~~~~i~~~~~~~~~~et~  413 (434)
                      +++.|+.+....+|..+++.+.+.+.+.      .+....+++.++..++..++.+++.||++
T Consensus       131 g~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p  193 (412)
T TIGR02332       131 ARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSP  193 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCc
Confidence            9999999999889999999888876532      34456666767666666666666667775

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.08  E-value=9.7e-09  Score=100.94  Aligned_cols=139  Identities=17%  Similarity=0.135  Sum_probs=92.3

Q ss_pred             HHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCC
Q 013910          275 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTS  354 (434)
Q Consensus       275 ~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~  354 (434)
                      .....++..++.++.++++||+|||+.+..+.++..+..+......+.+.................+....+.+|.+|++
T Consensus        56 ~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~  135 (406)
T PRK11551         56 FSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPR  135 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHH
Confidence            34445677889999999999999999998877666554443333332222222222211222233455677889999999


Q ss_pred             chhhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccC
Q 013910          355 MRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  413 (434)
Q Consensus       355 ~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~et~  413 (434)
                      .|+++.++.+....+|+.+++.+...+.+..+....+++.+++.++..+...+..||+.
T Consensus       136 ~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  194 (406)
T PRK11551        136 LRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESR  194 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence            99999999999988999999887766655555455566656555555555555556764

>TIGR00895 2A0115 benzoate transport

Probab=99.07  E-value=4.5e-09  Score=102.57  Aligned_cols=138  Identities=20%  Similarity=0.143  Sum_probs=94.6

Q ss_pred             HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCc
Q 013910          276 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSM  355 (434)
Q Consensus       276 ~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~  355 (434)
                      ....+..+++.++.+.++||+|||+.+..+..+..+..+......+.+..........++.....+....+.+|.+|++.
T Consensus        59 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  138 (398)
T TIGR00895        59 SAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF  138 (398)
T ss_pred             HHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh
Confidence            34456678889999999999999999988776666554444333322222111111112222335667788999999999


Q ss_pred             hhhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccC
Q 013910          356 RSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  413 (434)
Q Consensus       356 R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~et~  413 (434)
                      |+++.|+......+|+.++|.+.+.+.+..+....+++.+..+++..+..+...||+.
T Consensus       139 r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (398)
T TIGR00895       139 RGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESI  196 (398)
T ss_pred             hchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCC
Confidence            9999999999999999999998888777666555566665555665566666666653

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.07  E-value=1.1e-08  Score=101.72  Aligned_cols=128  Identities=16%  Similarity=0.209  Sum_probs=84.4

Q ss_pred             HHHhhhhhHHHHHHHHHHhh-chhHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHhhh-hhhhhhhcccccCC
Q 013910          277 ITSFAELPGLLTAALLVDRV-GRKLSMTIMFIFVCIFLLPLVTLQ-SNILLTALLSGARMFSMGT-FIIANIFAPEIYPT  353 (434)
Q Consensus       277 ~~~~~~~~g~~~~~~l~dr~-gRR~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~El~P~  353 (434)
                      .......++.+++|+++||+ |||+.++.+.++..+..+.+.... ........... ..+..+. .+....+.+|++|+
T Consensus        53 ~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~l-i~iG~G~~~~~~~alv~elfp~  131 (493)
T PRK15462         53 AYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAI-IVCGYGLFKSNVSCLLGELYEP  131 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH-HHHhcccccccHHHHHHHHCCC
Confidence            33355677889999999999 999999888777665543332211 11111111111 1112232 24456788999998


Q ss_pred             C--chhhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHH
Q 013910          354 S--MRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVI  405 (434)
Q Consensus       354 ~--~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~  405 (434)
                      +  .|.+++++.++.+++|+.++|.+.+.+.+..|....+.+.++.++++.+..
T Consensus       132 ~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~  185 (493)
T PRK15462        132 TDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIF  185 (493)
T ss_pred             CCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHH
Confidence            6  799999999999999999999999988876666666666555444444433

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.07  E-value=1.2e-08  Score=90.91  Aligned_cols=123  Identities=13%  Similarity=0.058  Sum_probs=77.0

Q ss_pred             hhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHH-HHh-hhhhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHH
Q 013910          283 LPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLP-LVT-LQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGA  360 (434)
Q Consensus       283 ~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~a~  360 (434)
                      .+-..+.|.++||.||+..++.+..+..+..=. +.+ ..+++....+....-   .......|-..+-+.|.+.-++|.
T Consensus       314 av~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~lsPy~~m~~lGLsy---sllAcslWP~va~~vpE~qLGTay  390 (459)
T KOG4686|consen  314 AVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTFLSPYTSMTFLGLSY---SLLACSLWPCVASLVPEEQLGTAY  390 (459)
T ss_pred             hhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhhccHHHHHHHHhhhH---HHHHHHHhhhhhhhCCHHHhcchH
Confidence            344567889999999999888776555443211 111 122333322221110   111123577788889999999999


Q ss_pred             hHHHHhhhHhHhhHHHHHHHHhhhcchh----hHHHHHHHHHHHHHHHHHhc
Q 013910          361 GVAYAVGRIGGMVCPLVAVGLVTSCHQT----AAILLLEALIVLSVVVILLI  408 (434)
Q Consensus       361 gi~~~~~~ig~~~~p~~~~~l~~~~g~~----~~~~~~~~~~~i~~~~~~~~  408 (434)
                      |.+.++.++|-.+.|++.+.+.|.-|++    ..++..+.+++++..+.+.+
T Consensus       391 gf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~  442 (459)
T KOG4686|consen  391 GFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYL  442 (459)
T ss_pred             HHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence            9999999999999999999887754422    23344455555555555444

>PRK10054 putative transporter; Provisional

Probab=99.06  E-value=1.2e-08  Score=99.87  Aligned_cols=136  Identities=13%  Similarity=0.082  Sum_probs=90.8

Q ss_pred             HHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCch
Q 013910          277 ITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMR  356 (434)
Q Consensus       277 ~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R  356 (434)
                      ...+..+++....|.++||+|||+.+..+.+...+..+...+.++.+.................+....+.+|.+|++.|
T Consensus        51 ~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  130 (395)
T PRK10054         51 IALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSK  130 (395)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHH
Confidence            33456677888999999999999988877766655444433333222221111111111112244567778899999999


Q ss_pred             hhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccC
Q 013910          357 STGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  413 (434)
Q Consensus       357 ~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~et~  413 (434)
                      +++.|+.+....+|..++|.+.+.+.+ .+....+.+.+++.+++.+...+..||++
T Consensus       131 ~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~~  186 (395)
T PRK10054        131 TKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRSE  186 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhccc
Confidence            999999999999999999998887664 45556666666666666655555445554

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.06  E-value=9.2e-09  Score=100.65  Aligned_cols=140  Identities=15%  Similarity=0.080  Sum_probs=95.4

Q ss_pred             HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCc
Q 013910          276 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSM  355 (434)
Q Consensus       276 ~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~  355 (434)
                      ....+...++.++.|+++||+|||+.+..+.....+.........+.+....................+.+..|.+|++.
T Consensus        45 ~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~  124 (392)
T PRK10473         45 SVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR  124 (392)
T ss_pred             HHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH
Confidence            34445667788999999999999999988776666554444332222221111111111122234566778899999999


Q ss_pred             hhhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccCCc
Q 013910          356 RSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGK  415 (434)
Q Consensus       356 R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~et~~~  415 (434)
                      |+++.++.+....+++.++|.+.+.+.+..+....+.+.++++++..++.++..||++.+
T Consensus       125 r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  184 (392)
T PRK10473        125 RAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETRPA  184 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence            999999999999999999998877666655555666777777777777666666777544

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.05  E-value=2.1e-08  Score=96.16  Aligned_cols=140  Identities=19%  Similarity=0.111  Sum_probs=96.2

Q ss_pred             HHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCC
Q 013910          275 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTS  354 (434)
Q Consensus       275 ~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~  354 (434)
                      .....+...++.+..|.++||+|||+.+..+.++.++..+...+..+.+......+....+.....+....+..|.+|++
T Consensus        38 ~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~  117 (352)
T PF07690_consen   38 FSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPE  117 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhccccccccccccccccccccccchhh
Confidence            34455677889999999999999999888887777766333333222222222222222222344567788899999999


Q ss_pred             chhhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccCC
Q 013910          355 MRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKG  414 (434)
Q Consensus       355 ~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~et~~  414 (434)
                      .|+++.++.+....+|..++|.+.+.+.+..+....+++.++.+++..++...+.++.+.
T Consensus       118 ~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~  177 (352)
T PF07690_consen  118 ERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEPPP  177 (352)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---ST
T ss_pred             hhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhccc
Confidence            999999999999999999999998877766565667788888887777754444444433

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.05  E-value=2.6e-08  Score=97.60  Aligned_cols=137  Identities=12%  Similarity=0.066  Sum_probs=94.5

Q ss_pred             HHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCch
Q 013910          277 ITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMR  356 (434)
Q Consensus       277 ~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R  356 (434)
                      ...+...++....+.++||+|||+.+..+.++.++..+......+.+.....-....+......+....+.+|.+|++.|
T Consensus        63 ~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~  142 (394)
T PRK10213         63 VTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTV  142 (394)
T ss_pred             HHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHH
Confidence            34556677888999999999999999888777766544433333222222221222222223345667778999999999


Q ss_pred             hhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccC
Q 013910          357 STGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  413 (434)
Q Consensus       357 ~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~et~  413 (434)
                      +.+.++......++..++|.+.+.+.+..+....+++.+.++++..+......||++
T Consensus       143 ~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~  199 (394)
T PRK10213        143 PKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLP  199 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence            999999999999999999999988887666666666666666655555555456654

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.04  E-value=2.3e-08  Score=104.14  Aligned_cols=107  Identities=17%  Similarity=0.127  Sum_probs=76.7

Q ss_pred             HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCc
Q 013910          276 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSM  355 (434)
Q Consensus       276 ~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~  355 (434)
                      ....++.++|.+++|+++||+|||+.++++.++.++..+...+..+.+...+.-+...++..+..+..+.+.+|.+|++.
T Consensus       209 s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~  288 (742)
T TIGR01299       209 LIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK  288 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Confidence            34457788999999999999999999988776666554444433222222222222223334456788999999999999


Q ss_pred             hhhHHhHHHHhhhHhHhhHHHHHHHHh
Q 013910          356 RSTGAGVAYAVGRIGGMVCPLVAVGLV  382 (434)
Q Consensus       356 R~~a~gi~~~~~~ig~~~~p~~~~~l~  382 (434)
                      |+...++...+..+|+++++.+...+.
T Consensus       289 Rg~~~g~~~~~~~iG~ila~~la~~il  315 (742)
T TIGR01299       289 RGEHLSWLCMFWMIGGIYAAAMAWAII  315 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998898888887665444

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.03  E-value=7.1e-09  Score=100.78  Aligned_cols=139  Identities=14%  Similarity=0.133  Sum_probs=97.5

Q ss_pred             HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCc
Q 013910          276 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSM  355 (434)
Q Consensus       276 ~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~  355 (434)
                      ....+...++.++.|.++||+|||+.+..+.++.++.........+.+..........++.....+....+.+|.+|++.
T Consensus        36 ~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~  115 (399)
T TIGR00893        36 SAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASE  115 (399)
T ss_pred             HHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH
Confidence            34556778889999999999999999888776666554444333322222222112222222334566788999999999


Q ss_pred             hhhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccCC
Q 013910          356 RSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKG  414 (434)
Q Consensus       356 R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~et~~  414 (434)
                      |+++.++......+|..++|.+.+.+.+..+....+.+.++..++..+..++..||++.
T Consensus       116 r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (399)
T TIGR00893       116 RATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQ  174 (399)
T ss_pred             HHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCC
Confidence            99999999999999999999988877776666666777777777766666666666543

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.02  E-value=2.4e-08  Score=98.16  Aligned_cols=138  Identities=19%  Similarity=0.084  Sum_probs=94.0

Q ss_pred             HHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCch
Q 013910          277 ITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMR  356 (434)
Q Consensus       277 ~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R  356 (434)
                      ...+...++..+.|.++||+|||+.+..+.....+..+......+.+......+..........+..+.+..|.+|++.|
T Consensus        56 ~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~  135 (406)
T PRK15402         56 AYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADA  135 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHH
Confidence            44466778888999999999999998887766665544443333222211111111111112234566777899999999


Q ss_pred             hhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccCC
Q 013910          357 STGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKG  414 (434)
Q Consensus       357 ~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~et~~  414 (434)
                      ..+.++......++..++|.+.+.+.+..+....+++.+++++++.+..++..||++.
T Consensus       136 ~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (406)
T PRK15402        136 IKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAG  193 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence            9999999888888888999888877776565566777777777777766666677754

>PRK10504 putative transporter; Provisional

Probab=99.01  E-value=3.2e-08  Score=99.38  Aligned_cols=135  Identities=13%  Similarity=0.044  Sum_probs=91.3

Q ss_pred             HhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhh
Q 013910          279 SFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRST  358 (434)
Q Consensus       279 ~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~  358 (434)
                      .++..++.++++.++||+|||+.+..+..+..+..+......+.+..........++.....+....+..|.+|++.|++
T Consensus        55 ~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~  134 (471)
T PRK10504         55 VLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMA  134 (471)
T ss_pred             HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHH
Confidence            45567788999999999999999887765555444333332222222111111112222334566777889999999999


Q ss_pred             HHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccC
Q 013910          359 GAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  413 (434)
Q Consensus       359 a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~et~  413 (434)
                      +.|+.+....++..++|.+.+.+.+..+....+.+...++.++.+......|+.+
T Consensus       135 ~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~  189 (471)
T PRK10504        135 AMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYT  189 (471)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            9999999999999999999988887666555666666666666666666655543

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.01  E-value=2.7e-08  Score=98.77  Aligned_cols=137  Identities=12%  Similarity=0.081  Sum_probs=93.5

Q ss_pred             HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCc
Q 013910          276 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSM  355 (434)
Q Consensus       276 ~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~  355 (434)
                      ....+...++.+++|+++||+|||+.+..+.++.++..+......+.+..........++....++....+.+|.+|++.
T Consensus        65 ~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~  144 (434)
T PRK11663         65 TLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE  144 (434)
T ss_pred             HHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH
Confidence            34456677889999999999999999988877777665544433322222111111111222234556778899999999


Q ss_pred             hhhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhccccc
Q 013910          356 RSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFET  412 (434)
Q Consensus       356 R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~et  412 (434)
                      |+++.|+.+....+|+.++|.+.+.+.+..+....+++.++++++..+...+..+|+
T Consensus       145 rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~  201 (434)
T PRK11663        145 RGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDK  201 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            999999999999999999999888887766666666666665555444444444453

>PRK03699 putative transporter; Provisional

Probab=99.01  E-value=6.4e-08  Score=94.84  Aligned_cols=130  Identities=15%  Similarity=0.153  Sum_probs=85.0

Q ss_pred             HHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCch
Q 013910          277 ITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMR  356 (434)
Q Consensus       277 ~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R  356 (434)
                      ...++..++.+++++++||+|||+.+..+..+..+.........+.+......+....+.....+....+..|.+|++.|
T Consensus        50 ~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r  129 (394)
T PRK03699         50 FLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQR  129 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchH
Confidence            34566788899999999999999998887766655544433333322222221222122222334556778899999999


Q ss_pred             hhHHhHHHHhhhHhHhhHHHHHHHHhhh-cchhhHHHHHHHHHHHHHHHHH
Q 013910          357 STGAGVAYAVGRIGGMVCPLVAVGLVTS-CHQTAAILLLEALIVLSVVVIL  406 (434)
Q Consensus       357 ~~a~gi~~~~~~ig~~~~p~~~~~l~~~-~g~~~~~~~~~~~~~i~~~~~~  406 (434)
                      +.+.+..+....+++.++|.+.+.+.+. .+....+.+.+++.++..++..
T Consensus       130 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~~  180 (394)
T PRK03699        130 GSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILTL  180 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence            9999998888888888999888776653 3445566666665555544443

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.01  E-value=3.4e-08  Score=96.74  Aligned_cols=137  Identities=17%  Similarity=0.124  Sum_probs=87.0

Q ss_pred             HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCc
Q 013910          276 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSM  355 (434)
Q Consensus       276 ~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~  355 (434)
                      ....+...++.++.|.++||+|||+.+..+.++..+..+......+.+......+..........+....+..|.+|++.
T Consensus        54 ~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~  133 (405)
T TIGR00891        54 SAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL  133 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh
Confidence            34456678889999999999999999988776666554444333222221111111112222334556778889999999


Q ss_pred             hhhHHhHHHHhhhHhHhhHHHHHHHHhhhcc--hhhHHHHHHHHHHHHHHHHHhcccccC
Q 013910          356 RSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH--QTAAILLLEALIVLSVVVILLIPFETK  413 (434)
Q Consensus       356 R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g--~~~~~~~~~~~~~i~~~~~~~~~~et~  413 (434)
                      |+.+.++.+....+|.++++.+.+.+.+..+  ....+.+.+...++. ++.....||++
T Consensus       134 ~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~-~~~~~~~~~~~  192 (405)
T TIGR00891       134 RNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFA-LWLRKNIPEAE  192 (405)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH-HHHHHhCCCCh
Confidence            9999999999999999999988877666544  333344333333333 33344446654

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.00  E-value=3.1e-08  Score=97.71  Aligned_cols=136  Identities=12%  Similarity=0.049  Sum_probs=94.1

Q ss_pred             HhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhh
Q 013910          279 SFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRST  358 (434)
Q Consensus       279 ~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~  358 (434)
                      .++..++.+..|.++||+|||+.+..+..+..+..+......+.....+.-+...+.........+.+..|.+|++.|++
T Consensus        61 ~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~  140 (413)
T PRK15403         61 LAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIK  140 (413)
T ss_pred             HHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            35667788899999999999999988776666554444333322222221111111111223445677889999999999


Q ss_pred             HHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccCC
Q 013910          359 GAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKG  414 (434)
Q Consensus       359 a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~et~~  414 (434)
                      +.++.+....++..++|.+.+.+.+..+....+++.++..+++.+...+..||++.
T Consensus       141 ~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~  196 (413)
T PRK15403        141 LMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVK  196 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence            99999999999999999888877766566667777777777776666666678754

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.00  E-value=3.8e-08  Score=97.42  Aligned_cols=118  Identities=19%  Similarity=0.134  Sum_probs=81.8

Q ss_pred             HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCc
Q 013910          276 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSM  355 (434)
Q Consensus       276 ~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~  355 (434)
                      ....+...++.++.|+++||+|||+.+..+.++.++.........+.+.....-+...+...+.++....+..|.+|++.
T Consensus        60 ~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~  139 (426)
T PRK12307         60 TAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL  139 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH
Confidence            34556778889999999999999999988877776655444333322222222122212222345666778899999999


Q ss_pred             hhhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHH
Q 013910          356 RSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILL  393 (434)
Q Consensus       356 R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~  393 (434)
                      |+++.|+......+|.+++|.+.+.+.+..+....+++
T Consensus       140 r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i  177 (426)
T PRK12307        140 KSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFV  177 (426)
T ss_pred             hhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHH
Confidence            99999999988889999998888777665554444444

>TIGR00900 2A0121 H+ Antiporter protein

Probab=98.99  E-value=5.5e-08  Score=93.65  Aligned_cols=133  Identities=14%  Similarity=0.048  Sum_probs=89.3

Q ss_pred             HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHHHhhhhhhhhhhcccc
Q 013910          276 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQ-----SNILLTALLSGARMFSMGTFIIANIFAPEI  350 (434)
Q Consensus       276 ~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~El  350 (434)
                      ....+...++.++.|.++||+|||+.+..+..+..+.........     +.+.................+....+.+|.
T Consensus        41 ~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~  120 (365)
T TIGR00900        41 LAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDL  120 (365)
T ss_pred             HHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            344566778889999999999999999887766554433332221     222221221121122223345667888999


Q ss_pred             cCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhc
Q 013910          351 YPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLI  408 (434)
Q Consensus       351 ~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~  408 (434)
                      +|++.|+++.|+.+....+|.+++|.+.+.+.+..+....+++.+...+++.+....+
T Consensus       121 ~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  178 (365)
T TIGR00900       121 VPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSV  178 (365)
T ss_pred             CCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999988887776665555666555555555554444

>PRK03893 putative sialic acid transporter; Provisional

Probab=98.98  E-value=5.1e-08  Score=98.53  Aligned_cols=117  Identities=20%  Similarity=0.172  Sum_probs=81.3

Q ss_pred             HHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCch
Q 013910          277 ITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMR  356 (434)
Q Consensus       277 ~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R  356 (434)
                      ...++..++.++.+.++||+|||+.+..+.++.++..+......+.+..........+...+.++....+..|.+|.+.|
T Consensus        63 ~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r  142 (496)
T PRK03893         63 AAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLR  142 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence            44566778899999999999999998887766665554444333222222222222222233455667788999999999


Q ss_pred             hhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHH
Q 013910          357 STGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILL  393 (434)
Q Consensus       357 ~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~  393 (434)
                      +.+.++.+....+|+.++|.+.+.+.+..+....+.+
T Consensus       143 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~  179 (496)
T PRK03893        143 NKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFI  179 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHH
Confidence            9999999999999999999998877765554444443

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.97  E-value=5.9e-08  Score=92.36  Aligned_cols=333  Identities=14%  Similarity=0.120  Sum_probs=183.5

Q ss_pred             hhHhhhcchHHHHHHHHHHHHHHHHHhhcc------cHH--HHHHHHHHHHhcCCCchhhhhhh-hhccCCCcchhHHHH
Q 013910           23 LYFIFAFSRMSILGGALVTFVAGLLSAFSP------NYI--SLLILRGLAGAGLGSGHVFFSWF-MEFVPPSNRGKWMVV   93 (434)
Q Consensus        23 ~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~------~~~--~l~~~R~l~Gig~g~~~~~~~~~-~E~~p~~~Rg~~~~~   93 (434)
                      |+.|+.|=|.+..++.++..++..+-..+.      .+.  ..+.+..+.+.+.--.....+=+ .=|+|+++|..+..+
T Consensus       101 w~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~  180 (480)
T KOG2563|consen  101 WILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVL  180 (480)
T ss_pred             HhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhH
Confidence            689999999999999999999988765542      222  45566666655432111111222 356799999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcc------cchHHH--HHHH-HHHHHHHHHHHHhcCCChhHHhhcCChHHHHHHHHHHHH
Q 013910           94 FSTFWTFGSVSEAALAWIVMPI------LTWRWL--LALS-AIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQ  164 (434)
Q Consensus        94 ~~~~~~~G~~l~~~l~~~~~~~------~~Wr~~--f~~~-~i~~~l~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~  164 (434)
                      -..+..+|..++.++...+.++      ..|-..  |... ++..+++.+..+..+|.|..--+     .+..       
T Consensus       181 ~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps-----~s~~-------  248 (480)
T KOG2563|consen  181 GVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPS-----ASQA-------  248 (480)
T ss_pred             HHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCc-----hhHh-------
Confidence            9999999999888887776543      357663  4422 22222233333334443331000     0000       


Q ss_pred             HcCCCCCCCCccCCCCCCCcccccCCCCccccccccccccccccccchhhhccCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 013910          165 FNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVL  244 (434)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  244 (434)
                                             +++ +              .+-.++.+.+++.+   +..++...+..+...+|+...
T Consensus       249 -----------------------~~~-~--------------~~f~~si~~~~~n~---~F~il~~~ygi~~g~F~~l~~  287 (480)
T KOG2563|consen  249 -----------------------ALQ-D--------------ASFPKSIKSCFKNR---QFIILAICYGIGLGLFNSLST  287 (480)
T ss_pred             -----------------------hhh-c--------------CcHHHHHHHHHcCc---cHHHHHHHHhhhHHHHHHHHH
Confidence                                   000 0              00112333333332   233444555555555666554


Q ss_pred             HHHhhhcccCCCCcccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchh-HHHHHHHHHHHHHHHH-HHhh---
Q 013910          245 LASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRK-LSMTIMFIFVCIFLLP-LVTL---  319 (434)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR-~~~~~~~~~~~~~~~~-~~~~---  319 (434)
                      .........         .+..  ........+..+.+.+|.+++|.+.||.+.= ...++......+.... ....   
T Consensus       288 ~l~~~l~~s---------gY~~--~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~  356 (480)
T KOG2563|consen  288 LLNLALCPS---------GYEG--VFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFL  356 (480)
T ss_pred             Hhhhccccc---------cCCc--cccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            432111000         0010  1111223444567788999999999998653 3333333333222111 1111   


Q ss_pred             hhhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhhhcc----hhhHHHHHH
Q 013910          320 QSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH----QTAAILLLE  395 (434)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g----~~~~~~~~~  395 (434)
                      ...++..........+..+..++..-+..|..=+..-++..|+.+..+.+.+++-.++.+...+..+    .....+.+.
T Consensus       357 ~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  436 (480)
T KOG2563|consen  357 GDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLT  436 (480)
T ss_pred             CceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhH
Confidence            1111111111111122334455555566777666677888999999999999888888887665544    334456677


Q ss_pred             HHHHHHHHHHHhcccccCCccccc
Q 013910          396 ALIVLSVVVILLIPFETKGKELVN  419 (434)
Q Consensus       396 ~~~~i~~~~~~~~~~et~~~~~~e  419 (434)
                      ..+++...+..++.|+-+.+..++
T Consensus       437 ~~~~l~~~lva~~r~~y~R~~~e~  460 (480)
T KOG2563|consen  437 VSALLGAILVAFFRPDYRRLRAEA  460 (480)
T ss_pred             HHHHHHHHHHhhhhhhHHhHhhhh
Confidence            777888888889988877665553

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.96  E-value=2.9e-08  Score=99.91  Aligned_cols=139  Identities=14%  Similarity=0.037  Sum_probs=96.8

Q ss_pred             HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCc
Q 013910          276 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSM  355 (434)
Q Consensus       276 ~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~  355 (434)
                      ....++..++..+.++++||+|||+.+..+.++..+..+......+............++.....+....+..|.+|++.
T Consensus        44 ~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~  123 (485)
T TIGR00711        44 TSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK  123 (485)
T ss_pred             HHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH
Confidence            34456778889999999999999999988877766655544433322222222222222222344667788899999999


Q ss_pred             hhhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccCC
Q 013910          356 RSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKG  414 (434)
Q Consensus       356 R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~et~~  414 (434)
                      |+++.++......+|..++|.+.+.+.+..+....+++.+...++..+...+..||.+.
T Consensus       124 r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~  182 (485)
T TIGR00711       124 RGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKP  182 (485)
T ss_pred             HHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccc
Confidence            99999999999999999999998888776665556666666666666666666666543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK03545 putative arabinose transporter; Provisional

Probab=98.96  E-value=8e-08  Score=93.99  Aligned_cols=136  Identities=9%  Similarity=0.016  Sum_probs=91.6

Q ss_pred             HHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCchh
Q 013910          278 TSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRS  357 (434)
Q Consensus       278 ~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~  357 (434)
                      ..+...++....+.+.||+|||+.+..+..+.++..+......+.+.................+....+.+|.+|++.|+
T Consensus        53 ~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~  132 (390)
T PRK03545         53 YAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKA  132 (390)
T ss_pred             HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhh
Confidence            33455667788899999999999998887766655444433332222211111111111122345567788999999999


Q ss_pred             hHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccC
Q 013910          358 TGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  413 (434)
Q Consensus       358 ~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~et~  413 (434)
                      ++.|+......++..++|.+.+.+.+..+....+.+.++++++..+..+...||.+
T Consensus       133 ~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~  188 (390)
T PRK03545        133 QALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLP  188 (390)
T ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            99999999999999999998887777666666777777777666666555555543

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.95  E-value=2.8e-08  Score=96.56  Aligned_cols=138  Identities=14%  Similarity=0.100  Sum_probs=96.6

Q ss_pred             HHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCch
Q 013910          277 ITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMR  356 (434)
Q Consensus       277 ~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R  356 (434)
                      ...+...++.+++|.++||+|||+.+..+.++..+.........+.+......+...++.....+....+..|.+|++.|
T Consensus        34 ~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~  113 (377)
T PRK11102         34 AYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEF  113 (377)
T ss_pred             HHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence            44566778899999999999999999888777666555444333222222222222222223344567788999999999


Q ss_pred             hhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccCC
Q 013910          357 STGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKG  414 (434)
Q Consensus       357 ~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~et~~  414 (434)
                      +++.++.+....++..++|.+.+.+.+..+....+++.+.++++..+...+..||++.
T Consensus       114 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (377)
T PRK11102        114 SRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPETLP  171 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCccCc
Confidence            9999999999999999999988887776665566677777777776666666667643

>TIGR00889 2A0110 nucleoside transporter

Probab=98.93  E-value=5.8e-09  Score=102.94  Aligned_cols=125  Identities=18%  Similarity=0.176  Sum_probs=98.8

Q ss_pred             hhhhhhhHhhhcchHHHHHHHHHHHHHHHHHhhc-c---cHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHH
Q 013910           18 LLLEPLYFIFAFSRMSILGGALVTFVAGLLSAFS-P---NYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMV   92 (434)
Q Consensus        18 ~~~~~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~-~---~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~   92 (434)
                      .+..+++.||+|||+.+..+.+...++..+.... +   ++..+++.+++.|++.+... ....++.|..|+++||+..+
T Consensus       268 ~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g  347 (418)
T TIGR00889       268 ILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQG  347 (418)
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence            3566789999999999999999888876655553 2   34677889999999987653 34567889999999999999


Q ss_pred             HHH-HHHHHHHHHHHHHHHHHhcc------cchHHHHHHHHHHHHHHH-HHHHhcCCC
Q 013910           93 VFS-TFWTFGSVSEAALAWIVMPI------LTWRWLLALSAIPAFVLL-IFIVFMPES  142 (434)
Q Consensus        93 ~~~-~~~~~G~~l~~~l~~~~~~~------~~Wr~~f~~~~i~~~l~~-~~~~~lpES  142 (434)
                      +.+ ..+.+|..+++.+++.+.+.      .|||..|.+.++..++.. +..++++|+
T Consensus       348 ~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~  405 (418)
T TIGR00889       348 LFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYS  405 (418)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            997 67889999999998877554      579999998877766654 445567776

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=98.92  E-value=1.2e-08  Score=98.77  Aligned_cols=138  Identities=16%  Similarity=0.131  Sum_probs=91.8

Q ss_pred             HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCc
Q 013910          276 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSM  355 (434)
Q Consensus       276 ~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~  355 (434)
                      ....+...++.++.|+++||+|||+.+..+..+..+..+......+.+..........++.....+....+.+|.+|++.
T Consensus        37 ~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  116 (379)
T TIGR00881        37 SSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE  116 (379)
T ss_pred             HHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh
Confidence            34456777889999999999999999988877766655544433322222222122112222334566778899999999


Q ss_pred             hhhHHhHHHHhhhHhHhhHH-HHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccC
Q 013910          356 RSTGAGVAYAVGRIGGMVCP-LVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  413 (434)
Q Consensus       356 R~~a~gi~~~~~~ig~~~~p-~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~et~  413 (434)
                      |+++.++.+....+|+.++| .+...+.+..+....+++.+.++++..+..+++.||++
T Consensus       117 r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (379)
T TIGR00881       117 RGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSP  175 (379)
T ss_pred             heeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCCc
Confidence            99999999999999999998 44444444444455566666666666566666555543

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.90  E-value=8.5e-08  Score=96.21  Aligned_cols=172  Identities=17%  Similarity=0.102  Sum_probs=103.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHh-hchhHHHHHHH
Q 013910          228 LWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDR-VGRKLSMTIMF  306 (434)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr-~gRR~~~~~~~  306 (434)
                      +....+.+.+.+|+..-+.+.+.....        ..+.+................++.+++|+++|| +|||+.+..+.
T Consensus        15 l~~~~~~~~~~~~~~~~~L~~yl~~~~--------~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~   86 (475)
T TIGR00924        15 LFFVELWERFSYYGMQGILAVYLVQQA--------GLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGG   86 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCC--------CCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHH
Confidence            444555567777776555444432110        001111222223334456678899999999999 89999999888


Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCc---hhhHHhHHHHhhhHhHhhHHHHHHHHhh
Q 013910          307 IFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSM---RSTGAGVAYAVGRIGGMVCPLVAVGLVT  383 (434)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~---R~~a~gi~~~~~~ig~~~~p~~~~~l~~  383 (434)
                      ++.++..+.+....+.............+.....+....+.+|.+|++.   |+++.++.+...++|+.++|.+.+.+.+
T Consensus        87 ~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~  166 (475)
T TIGR00924        87 IVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAE  166 (475)
T ss_pred             HHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHH
Confidence            7777655544433222221111111111111223455677889998754   8899999999999999999999998877


Q ss_pred             hcchhhHHHHHHHHHHHHHHHHHh
Q 013910          384 SCHQTAAILLLEALIVLSVVVILL  407 (434)
Q Consensus       384 ~~g~~~~~~~~~~~~~i~~~~~~~  407 (434)
                      ..+....+.+.++.++++.+...+
T Consensus       167 ~~g~~~~f~~~~~~~~~~~l~~~~  190 (475)
T TIGR00924       167 NYGYHVGFNLAAVGMVIGLLTFFA  190 (475)
T ss_pred             hcChHHHHHHHHHHHHHHHHHHHH
Confidence            666555666655555555444433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.88  E-value=1.9e-07  Score=91.40  Aligned_cols=139  Identities=17%  Similarity=0.032  Sum_probs=89.4

Q ss_pred             HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCc
Q 013910          276 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSM  355 (434)
Q Consensus       276 ~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~  355 (434)
                      ....+...++..+.|.++||+|||+.+..+.....+..+......+.+..........++.....+....+..|.+|.+.
T Consensus        50 ~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  129 (394)
T PRK11652         50 AAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ  129 (394)
T ss_pred             HHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH
Confidence            34456677888999999999999999888766665544443332222221111111111111223445567788999889


Q ss_pred             hhhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccCC
Q 013910          356 RSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKG  414 (434)
Q Consensus       356 R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~et~~  414 (434)
                      |+.+.++.+....++..++|.+.+.+.+..+....+.+.++..++..+...+..||++.
T Consensus       130 ~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~  188 (394)
T PRK11652        130 LRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRP  188 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCc
Confidence            99999988888888888899888877765565566666666555555555555667643

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.87  E-value=1.4e-06  Score=86.11  Aligned_cols=308  Identities=18%  Similarity=0.167  Sum_probs=169.3

Q ss_pred             hhhhhhh---hhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCc---hhhhhhhhhccCCCcchh
Q 013910           16 PKLLLEP---LYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG---HVFFSWFMEFVPPSNRGK   89 (434)
Q Consensus        16 ~~~~~~~---~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~---~~~~~~~~E~~p~~~Rg~   89 (434)
                      +-++-.|   -++||+|||..+.+......+..++..+.. ++.++    +.|+.-+..   ....+|+++.+..++|..
T Consensus        74 ~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R~~  148 (463)
T KOG2816|consen   74 LTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEERSS  148 (463)
T ss_pred             HHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchhHHHH
Confidence            4444445   389999999999999998888887776666 22222    566543322   345678899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH-HHHhcCCChhHHhhcCChHHHHHHHHHHHHHcCC
Q 013910           90 WMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLI-FIVFMPESPRYLCTKGRITDAHNILDKIAQFNQT  168 (434)
Q Consensus        90 ~~~~~~~~~~~G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~-~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~  168 (434)
                      ..++....+..+..+++.++.......+.=.+|.+..+..++..+ .+..+|||-+-   +.+.+               
T Consensus       149 ~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~---~~~~~---------------  210 (463)
T KOG2816|consen  149 SIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQE---KERSD---------------  210 (463)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCc---ccccc---------------
Confidence            999999999999999999988877777888888888887777644 56679998541   10000               


Q ss_pred             CCCCCCccCCCCCCCcccccCCCCccccccccccccccccccchhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013910          169 SLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASE  248 (434)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  248 (434)
                          .+..   +.+......+..               .+   .+......+..|..+.+....+   +.+      .+.
T Consensus       211 ----~~~~---~~~~~~~~~~~~---------------~~---~~~~~~~~~~~r~~l~l~l~~~---~~~------~~~  256 (463)
T KOG2816|consen  211 ----ATLR---ELTPGSLDSSHV---------------AD---AFQSLTKVGPDRLLLLLLLVAF---LSS------LPE  256 (463)
T ss_pred             ----cccc---ccCCCcccchhh---------------hh---hhhhhcccCCCccchHHHHHHH---HHH------HHH
Confidence                0000   000000000000               00   0001111111111111111111   001      111


Q ss_pred             hhcccCCCCcccccccCccchhHHH-HHHHHHhhhhhHHHHHH-HHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 013910          249 LSGSQSKCSSSILLSENVQDASVYI-NVFITSFAELPGLLTAA-LLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLT  326 (434)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~-~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (434)
                      ..... ...-..+......+...+. .....+..+.++.++.. .+...+|-|+....+...-.+......+....|...
T Consensus       257 ~~~~~-~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~  335 (463)
T KOG2816|consen  257 AGGAS-DVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMF  335 (463)
T ss_pred             hcCce-eEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhh
Confidence            11000 0000000000111112222 12233344555666655 777788888866666555554444444433333211


Q ss_pred             HHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHh
Q 013910          327 ALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLV  382 (434)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~  382 (434)
                      ...... .+.....+....+.+-...++.++++.++...+..+.++++|.+...+.
T Consensus       336 ~~~v~~-~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~  390 (463)
T KOG2816|consen  336 AAGVVV-ALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIF  390 (463)
T ss_pred             HHHHHH-HhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHH
Confidence            111111 1122345666777788888999999999999999999999998887664

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.87  E-value=2.7e-07  Score=93.30  Aligned_cols=136  Identities=17%  Similarity=0.045  Sum_probs=90.2

Q ss_pred             HhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccc-cCCCchh
Q 013910          279 SFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEI-YPTSMRS  357 (434)
Q Consensus       279 ~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El-~P~~~R~  357 (434)
                      .+....+.+..|.++||+|||+.+..+..+..+..+......+.+...+.-....+...+..+.......+. .|++.|+
T Consensus        51 ~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~  130 (495)
T PRK14995         51 SLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRN  130 (495)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            344456678899999999999999988777766555444333322222211111112222233334444454 4779999


Q ss_pred             hHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccCC
Q 013910          358 TGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKG  414 (434)
Q Consensus       358 ~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~et~~  414 (434)
                      ++.|+......+|..++|.+.+.+.+..+..+.+++...++++..++.+++.||.++
T Consensus       131 ~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~  187 (495)
T PRK14995        131 MALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAG  187 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            999999999999999999999988887666666766666666666666666677543

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.86  E-value=1.2e-07  Score=91.76  Aligned_cols=136  Identities=13%  Similarity=-0.011  Sum_probs=88.2

Q ss_pred             HHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCch
Q 013910          277 ITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMR  356 (434)
Q Consensus       277 ~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R  356 (434)
                      ...++..++.+..|+++||+|||+++..+...............+.......-+.. ....+.........+|.+|++.|
T Consensus        34 ~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~-G~g~~~~~~~~~~~~~~~~~~~r  112 (368)
T TIGR00903        34 TYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLA-ALGQPFLLNAFAPAASQIREERR  112 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH-HhHhHHHHHHHHHHHHHcCHHHH
Confidence            33456678889999999999999876554333322221111111111111111111 11122333445556899999999


Q ss_pred             hhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccC
Q 013910          357 STGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  413 (434)
Q Consensus       357 ~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~et~  413 (434)
                      +++.++......+|+.+++.+.+.+.+..+....+++.+++.++..+..++..||..
T Consensus       113 ~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p  169 (368)
T TIGR00903       113 DLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALP  169 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            999999999999999999988888877666666677777777777777777777754

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.86  E-value=1.7e-07  Score=91.39  Aligned_cols=138  Identities=11%  Similarity=0.031  Sum_probs=94.1

Q ss_pred             HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCc
Q 013910          276 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSM  355 (434)
Q Consensus       276 ~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~  355 (434)
                      ....++..++..+.|+++||+|||+.+..+..+.++..+......+.+......+...++.....+....+..|.+|++.
T Consensus        45 s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~  124 (382)
T PRK10091         45 SYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK  124 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH
Confidence            34456778899999999999999999998877777655544443332222222111111111223445567789999999


Q ss_pred             hhhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccC
Q 013910          356 RSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  413 (434)
Q Consensus       356 R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~et~  413 (434)
                      |+.+.++......++..++|.+.+.+.+..+....+.+.+...++..+..++..||.+
T Consensus       125 ~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~  182 (382)
T PRK10091        125 VTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIR  182 (382)
T ss_pred             hhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            9999999888888888888888777766656566677767666666666666667754

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.85  E-value=3.1e-07  Score=90.17  Aligned_cols=133  Identities=11%  Similarity=-0.020  Sum_probs=88.1

Q ss_pred             HhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhh
Q 013910          279 SFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRST  358 (434)
Q Consensus       279 ~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~  358 (434)
                      .+.......++|.++||+|||+.+..+..+..+..+......+.+.................+....+..|.+|++.|++
T Consensus        56 ~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~  135 (400)
T PRK11646         56 QFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGR  135 (400)
T ss_pred             HHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            34445556788999999999999988877777665554443332222221111111111223445677889999999999


Q ss_pred             HHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhccccc
Q 013910          359 GAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFET  412 (434)
Q Consensus       359 a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~et  412 (434)
                      +.|+.+....+|..++|.+.+.+. ..+....+.+.+..+++..+......||.
T Consensus       136 a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~  188 (400)
T PRK11646        136 FFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAY  188 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            999999999999999999988776 44555566666666555555544455554

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.84  E-value=2.6e-07  Score=89.30  Aligned_cols=107  Identities=21%  Similarity=0.252  Sum_probs=72.1

Q ss_pred             HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCC
Q 013910          276 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQ-SNILLTALLSGARMFSMGTFIIANIFAPEIYPTS  354 (434)
Q Consensus       276 ~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~  354 (434)
                      ....+...++.+++|.++||+|||+.+..+.++..+..+...... +.+.......... ...+.+.....+.+|.+|++
T Consensus        44 ~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~  122 (366)
T TIGR00886        44 AVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIG-IAGGSFASCMPWISFFFPKK  122 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HhchhhHhHHHHHHHhcCHh
Confidence            344567788999999999999999999888777766554443333 2222111111111 11233445566788999999


Q ss_pred             chhhHHhHHHHhhhHhHhhHHHHHHHHhh
Q 013910          355 MRSTGAGVAYAVGRIGGMVCPLVAVGLVT  383 (434)
Q Consensus       355 ~R~~a~gi~~~~~~ig~~~~p~~~~~l~~  383 (434)
                      .|+++.++......+|..+++.+.+.+..
T Consensus       123 ~r~~~~~~~~~~~~~g~~~~~~i~~~l~~  151 (366)
T TIGR00886       123 IQGTALGLAAGWGNMGGGVAQFVMPPIIG  151 (366)
T ss_pred             hhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            99999999998888888777776665443

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=98.83  E-value=2.2e-07  Score=92.77  Aligned_cols=138  Identities=14%  Similarity=0.042  Sum_probs=83.9

Q ss_pred             HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHhhhhhhhhhhccccc
Q 013910          276 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQ----SNILLTALLSGARMFSMGTFIIANIFAPEIY  351 (434)
Q Consensus       276 ~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~  351 (434)
                      ....+...++.+++|.++||+|||+.+..+.++.++..+......    +............++....++.......|.+
T Consensus        70 ~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~  149 (452)
T PRK11273         70 SGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWW  149 (452)
T ss_pred             HHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhC
Confidence            344566778899999999999999999888776665554443221    1111111111111222222344455677999


Q ss_pred             CCCchhhHHhHHHHhhhHhHh-hHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccC
Q 013910          352 PTSMRSTGAGVAYAVGRIGGM-VCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  413 (434)
Q Consensus       352 P~~~R~~a~gi~~~~~~ig~~-~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~et~  413 (434)
                      |++.|+++.|+.+....+|+. .+|.+...+....+....+++.++++++..++.+++.||+.
T Consensus       150 ~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~  212 (452)
T PRK11273        150 SQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTP  212 (452)
T ss_pred             ChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCH
Confidence            999999999998888888764 45543322222224445666666666666566656556653

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=98.81  E-value=1.9e-06  Score=82.69  Aligned_cols=124  Identities=15%  Similarity=0.176  Sum_probs=102.5

Q ss_pred             hhhhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCchhhhhhhhhccCCCcchhHHHHHHHHHHH
Q 013910           21 EPLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTF  100 (434)
Q Consensus        21 ~~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~  100 (434)
                      ....+|..|-|+++++..+...+...+..+.++...+-+..+.-|++.+...+.++|+--..|+++--++.+....+.-.
T Consensus        61 vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~evay~sYiys~v~~~~yq~vts~~raa~l~  140 (412)
T PF01770_consen   61 VFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAAEVAYYSYIYSVVDKEHYQKVTSYTRAATLV  140 (412)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHheeecCHHHHHHHHHHHHHHHHH
Confidence            33589999999999999999999999999999999999999999999988877778877777888888889999999999


Q ss_pred             HHHHHHHHHHHHhc--ccchHHHHHHHHHHHHHHHHHHHhcCCChh
Q 013910          101 GSVSEAALAWIVMP--ILTWRWLLALSAIPAFVLLIFIVFMPESPR  144 (434)
Q Consensus       101 G~~l~~~l~~~~~~--~~~Wr~~f~~~~i~~~l~~~~~~~lpESp~  144 (434)
                      |..++++++..+..  ..+.+.+..+......+..+..+++|-.++
T Consensus       141 g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~  186 (412)
T PF01770_consen  141 GRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMPKR  186 (412)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence            99999888887654  456777777776655555566677776554

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.81  E-value=1.9e-07  Score=92.91  Aligned_cols=138  Identities=16%  Similarity=0.087  Sum_probs=88.1

Q ss_pred             HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhh---hhHH-HHHHHHHHHHHHhhhhhhhhhhccccc
Q 013910          276 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQ---SNIL-LTALLSGARMFSMGTFIIANIFAPEIY  351 (434)
Q Consensus       276 ~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~El~  351 (434)
                      ....++..++.++.|+++||+|||+.+..+.++.++..+......   ++.. .........++....++.......|.+
T Consensus        68 ~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~  147 (438)
T TIGR00712        68 SAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWW  147 (438)
T ss_pred             HHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhc
Confidence            344566778899999999999999988877666665544332211   1111 111111111111122344556677999


Q ss_pred             CCCchhhHHhHHHHhhhHhHhhHHHHHHHHhhh-cchhhHHHHHHHHHHHHHHHHHhcccccC
Q 013910          352 PTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTS-CHQTAAILLLEALIVLSVVVILLIPFETK  413 (434)
Q Consensus       352 P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~-~g~~~~~~~~~~~~~i~~~~~~~~~~et~  413 (434)
                      |++.|+++.|+.+....+++.++|.+.+...+. .+....+++.++++++..+..+++.||+.
T Consensus       148 ~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~  210 (438)
T TIGR00712       148 SQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTP  210 (438)
T ss_pred             CcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence            999999999999999999988888776654442 34455667777777776666666666653

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=98.81  E-value=5.4e-07  Score=88.54  Aligned_cols=135  Identities=19%  Similarity=0.125  Sum_probs=91.0

Q ss_pred             HHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCch
Q 013910          277 ITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMR  356 (434)
Q Consensus       277 ~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R  356 (434)
                      +..+...++..+.|.++||+|||+.+..+.....+..+......+.+..........+ ..+..+....+..|.+|++.|
T Consensus        62 ~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~  140 (408)
T PRK09874         62 ITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGL-LGGFVPNANALIATQVPRNKS  140 (408)
T ss_pred             HHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-hhhhHHhHHHHHHHhcCHhhh
Confidence            4445667788889999999999999888766665544433332222221111111111 123334455667789999999


Q ss_pred             hhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhccccc
Q 013910          357 STGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFET  412 (434)
Q Consensus       357 ~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~et  412 (434)
                      +.+.|+.+....+|.+++|.+.+.+.+..+....+.+.+++.++..+...++.||.
T Consensus       141 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (408)
T PRK09874        141 GWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIREN  196 (408)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            99999999998999999999988877766656667777777777766666665554

>PRK15011 sugar efflux transporter B; Provisional

Probab=98.80  E-value=4.5e-08  Score=95.90  Aligned_cols=122  Identities=15%  Similarity=0.130  Sum_probs=95.7

Q ss_pred             hhhhhhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHHHHHH
Q 013910           19 LLEPLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTF   97 (434)
Q Consensus        19 ~~~~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~   97 (434)
                      ++..++.||+|||+.+..+.....+........++...+++.|++.+++.|... ....+..|..|. +||+..++++..
T Consensus       270 ~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~  348 (393)
T PRK15011        270 LIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNT  348 (393)
T ss_pred             HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHH
Confidence            345678999999998887766555544444556788888899999888766532 334567898875 599999999999


Q ss_pred             HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcCC
Q 013910           98 WTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPE  141 (434)
Q Consensus        98 ~~~G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~~~~~lpE  141 (434)
                      ..+|..+++.++..+.+..+|+..|.+..++.++..+..+++||
T Consensus       349 ~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  392 (393)
T PRK15011        349 SRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRIKD  392 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence            99999999999988888889999999988888877776666665

>PRK09528 lacY galactoside permease; Reviewed

Probab=98.80  E-value=1.9e-08  Score=99.42  Aligned_cols=124  Identities=12%  Similarity=0.064  Sum_probs=98.7

Q ss_pred             hhhhhhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHH-HHH
Q 013910           19 LLEPLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVV-FST   96 (434)
Q Consensus        19 ~~~~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~-~~~   96 (434)
                      +..+++.||+|||+.+..+.++..++.++.++++|...+++.+++.|++.+... ....++.|..|++.|+...+. ++.
T Consensus       280 ~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  359 (420)
T PRK09528        280 FFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQF  359 (420)
T ss_pred             HHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHH
Confidence            345679999999999999999888888888889999999999999998776543 344677899999999987654 677


Q ss_pred             HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH-HHHhcCCC
Q 013910           97 FWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLI-FIVFMPES  142 (434)
Q Consensus        97 ~~~~G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~-~~~~lpES  142 (434)
                      ...+|.++++.+.+.+.+..|||..|...++..++..+ .+..+++.
T Consensus       360 ~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~  406 (420)
T PRK09528        360 AKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGD  406 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            78899999999988888888999999987776655433 33444443

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=98.80  E-value=2.9e-07  Score=88.95  Aligned_cols=137  Identities=14%  Similarity=0.062  Sum_probs=85.8

Q ss_pred             HHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccccCC
Q 013910          274 NVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPT  353 (434)
Q Consensus       274 ~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~  353 (434)
                      ......++..++.+..|.++||+|||+.+..+.++.++..+......+.+................+........|.+| 
T Consensus        43 ~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-  121 (377)
T TIGR00890        43 WFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-  121 (377)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-
Confidence            3345556778899999999999999999988877766655544433322222111111111111223334445667777 


Q ss_pred             CchhhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccc
Q 013910          354 SMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFE  411 (434)
Q Consensus       354 ~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e  411 (434)
                      +.|+++.++......+|..+.+.+...+.+..+....+++.++.+++..+..+++.+|
T Consensus       122 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~  179 (377)
T TIGR00890       122 DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGY  179 (377)
T ss_pred             cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheec
Confidence            4699999999888888877766555555554455566677777766666666555443

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=98.79  E-value=4.3e-08  Score=96.14  Aligned_cols=121  Identities=20%  Similarity=0.145  Sum_probs=98.7

Q ss_pred             hhhhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHHHHHHHH
Q 013910           21 EPLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWT   99 (434)
Q Consensus        21 ~~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~   99 (434)
                      .+++.||+|||+.+..+..+..++.++..+.+|...+++.+++.|++.+... .......|..|+++||+..++++....
T Consensus       269 ~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~  348 (399)
T PRK05122        269 FGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLD  348 (399)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            3568899999999988888888877777788888888999999999887643 334456799999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcCC
Q 013910          100 FGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPE  141 (434)
Q Consensus       100 ~G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~~~~~lpE  141 (434)
                      +|..+++.+...+.+..||++.|.+.++..++..+....+++
T Consensus       349 ~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  390 (399)
T PRK05122        349 LSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYR  390 (399)
T ss_pred             HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999888888777777789999999888777766555544443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=98.78  E-value=2.8e-07  Score=88.06  Aligned_cols=133  Identities=23%  Similarity=0.195  Sum_probs=90.8

Q ss_pred             HHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCC
Q 013910          275 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTS  354 (434)
Q Consensus       275 ~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~  354 (434)
                      .....+...++..+.|.++||+|||+.+..+..+..+..+......+.+.................+....+..|.+|++
T Consensus        40 ~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~  119 (352)
T cd06174          40 VSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPK  119 (352)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCcc
Confidence            34455677889999999999999999888877777665554443322222211111111112223456678889999999


Q ss_pred             chhhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHh
Q 013910          355 MRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILL  407 (434)
Q Consensus       355 ~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~  407 (434)
                      .|+++.++.+....+|..++|.+.+.+.+..+....+.+.+...++..+...+
T Consensus       120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (352)
T cd06174         120 ERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLF  172 (352)
T ss_pred             chhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999988877655555555555555555544433

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK11043 putative transporter; Provisional

Probab=98.76  E-value=7.5e-07  Score=87.42  Aligned_cols=137  Identities=17%  Similarity=0.100  Sum_probs=90.3

Q ss_pred             HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCc
Q 013910          276 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSM  355 (434)
Q Consensus       276 ~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~  355 (434)
                      .+..+...++.+++|.++||+|||+.+..+..+..+..+......+.+......+...+...........+..|.+|.+.
T Consensus        48 s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~  127 (401)
T PRK11043         48 SLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK  127 (401)
T ss_pred             HHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH
Confidence            34456677899999999999999999888776665544433332222221111111111111222334566789999999


Q ss_pred             hhhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhccccc
Q 013910          356 RSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFET  412 (434)
Q Consensus       356 R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~et  412 (434)
                      |..+.+..+....+++.++|.+.+.+.+..+....+.+.+.+.++..+...+++++.
T Consensus       128 ~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (401)
T PRK11043        128 ANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRLKPSK  184 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            999999988888899999999988887766666666666666666666665665443

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.74  E-value=1.3e-06  Score=88.62  Aligned_cols=108  Identities=19%  Similarity=0.139  Sum_probs=73.8

Q ss_pred             HHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhh------hHHHHHHHHHHHHHHhhhhhhhhhhc
Q 013910          274 NVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQS------NILLTALLSGARMFSMGTFIIANIFA  347 (434)
Q Consensus       274 ~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (434)
                      ......++.++|.+++++++||+|||+.+..+.++..+..+......+      .......-+...++..+.++....+.
T Consensus        61 ~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~  140 (502)
T TIGR00887        61 VNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIIT  140 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            344556778899999999999999999988776666554433332111      11111111222222333456778999


Q ss_pred             ccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHH
Q 013910          348 PEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGL  381 (434)
Q Consensus       348 ~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l  381 (434)
                      +|.+|++.|+++.++.+....+|..+++.+...+
T Consensus       141 ~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~  174 (502)
T TIGR00887       141 SEFATKKWRGAMMAAVFAMQGFGILAGAIVALIV  174 (502)
T ss_pred             HHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999888888877766543

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.74  E-value=5.8e-07  Score=90.39  Aligned_cols=123  Identities=12%  Similarity=0.031  Sum_probs=78.3

Q ss_pred             hhHHHHHHHHHHh-hchhHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHhhhhhhhhhhcccccCCC--chhh
Q 013910          283 LPGLLTAALLVDR-VGRKLSMTIMFIFVCIFLLPLVTLQS-NILLTALLSGARMFSMGTFIIANIFAPEIYPTS--MRST  358 (434)
Q Consensus       283 ~~g~~~~~~l~dr-~gRR~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~--~R~~  358 (434)
                      .....++|+++|| +|||+++..+.++..+..+......+ ...................+....+.+|.+|++  .|..
T Consensus        64 ~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~  143 (489)
T PRK10207         64 YGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDG  143 (489)
T ss_pred             HHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhc
Confidence            3445689999999 99999999988777765544433221 111111111111111122345567889999987  4578


Q ss_pred             HHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHH
Q 013910          359 GAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVIL  406 (434)
Q Consensus       359 a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~  406 (434)
                      ++++.+...++|+.++|.+.+++.+..|....+++.++ .++..++.+
T Consensus       144 ~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i-~~~~~~~~~  190 (489)
T PRK10207        144 AFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGA-GLIIALLVY  190 (489)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH-HHHHHHHHH
Confidence            89999999999999999999988877665555555333 333333333

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.73  E-value=1.2e-06  Score=85.76  Aligned_cols=132  Identities=11%  Similarity=-0.046  Sum_probs=85.5

Q ss_pred             HHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCch
Q 013910          277 ITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMR  356 (434)
Q Consensus       277 ~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R  356 (434)
                      ...+...+...++|.++||+|||+++..+..+..+..+......+.  . ..............+....+.+|++|++.|
T Consensus        46 ~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~--~-~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~  122 (393)
T PRK11195         46 FFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP--L-LAYGLVGIGAAAYSPAKYGILTELLPGEKL  122 (393)
T ss_pred             HHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence            3345667788899999999999999988877665543332222221  1 111112222334456778899999999999


Q ss_pred             hhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccC
Q 013910          357 STGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  413 (434)
Q Consensus       357 ~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~et~  413 (434)
                      +++.|+......++.+++|.+.+.+.+.. ....+.+.+.+.+++. +..+..||.+
T Consensus       123 ~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~-~~~~~~i~~~~~~~~~-~~~~~l~~~~  177 (393)
T PRK11195        123 VKANGWMEGSTIAAILLGTVLGGALADPH-AEAALAVCALIYLLAA-LFNLFIPRLG  177 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-HHHhcCCCCc
Confidence            99999999999899999999998877743 2233333333333333 3334556654

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.73  E-value=2.5e-06  Score=84.15  Aligned_cols=138  Identities=12%  Similarity=0.049  Sum_probs=85.4

Q ss_pred             HHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHHHhhhhhhhhhhcc
Q 013910          274 NVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTL-----QSNILLTALLSGARMFSMGTFIIANIFAP  348 (434)
Q Consensus       274 ~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (434)
                      ...+..+...++.+..|.+.||+|.|+....+..+..+..+...+.     .+.......-....+ ..+.++......+
T Consensus        75 l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gi-gg~~f~~~~~~vs  153 (462)
T PRK15034         75 LTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGF-AGANFASSMGNIS  153 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHH-HHHhHHHHHHHHH
Confidence            3334455556777788999999999998888877766555444432     111111111111111 2334566677789


Q ss_pred             cccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHh-----hhc-------------chhhHHHHHHHHHHHHHHHHHhccc
Q 013910          349 EIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLV-----TSC-------------HQTAAILLLEALIVLSVVVILLIPF  410 (434)
Q Consensus       349 El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~-----~~~-------------g~~~~~~~~~~~~~i~~~~~~~~~~  410 (434)
                      +.||++.|+++.|+....+++|..+++++.+.+.     ...             +.....+++....++..+..+++.+
T Consensus       154 ~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~  233 (462)
T PRK15034        154 FFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMN  233 (462)
T ss_pred             HHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999999998888888877766665433     111             1223344666666666666666555


Q ss_pred             cc
Q 013910          411 ET  412 (434)
Q Consensus       411 et  412 (434)
                      +.
T Consensus       234 ~~  235 (462)
T PRK15034        234 DI  235 (462)
T ss_pred             Cc
Confidence            54

>PRK10489 enterobactin exporter EntS; Provisional

Probab=98.71  E-value=6.8e-07  Score=88.26  Aligned_cols=137  Identities=15%  Similarity=0.098  Sum_probs=86.0

Q ss_pred             HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHH---h-hhhh-HHHHHHHHHHHHHHhhhhhhhhhhcccc
Q 013910          276 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLV---T-LQSN-ILLTALLSGARMFSMGTFIIANIFAPEI  350 (434)
Q Consensus       276 ~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~---~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~El  350 (434)
                      ....+..+++.++.|.++||+|||+.+..+..+.++....+.   + ..++ +..........++.....+....+.+|.
T Consensus        59 ~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~  138 (417)
T PRK10489         59 TLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPAL  138 (417)
T ss_pred             HHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence            344566778889999999999999988776555544332221   1 1111 1111111111111112234456678899


Q ss_pred             cCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccC
Q 013910          351 YPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  413 (434)
Q Consensus       351 ~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~et~  413 (434)
                      .|++.|+++.++.+....+|..++|.+.+.+.+..+....+.+.++..+++.+....+ ||++
T Consensus       139 ~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~  200 (417)
T PRK10489        139 VGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRL-PALP  200 (417)
T ss_pred             cCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhC-CCCC
Confidence            9999999999999999999999999988887776555555555555555555444444 5543

>PRK12382 putative transporter; Provisional

Probab=98.71  E-value=8.1e-08  Score=93.98  Aligned_cols=117  Identities=20%  Similarity=0.083  Sum_probs=98.8

Q ss_pred             hhhhhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHHHHHHH
Q 013910           20 LEPLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFW   98 (434)
Q Consensus        20 ~~~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~   98 (434)
                      ..+++.||+|||+.+..+..+..++.++..+.++...+++++++.|++.+... .......|.+|+++||+..++++...
T Consensus       268 ~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~  347 (392)
T PRK12382        268 LFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQ  347 (392)
T ss_pred             HHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            34568999999999999988888888777888888888999999999887643 34456779999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHH
Q 013910           99 TFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFI  136 (434)
Q Consensus        99 ~~G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~~~  136 (434)
                      .+|..+++.+...+.+..||+..|.+.++..++..+..
T Consensus       348 ~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~  385 (392)
T PRK12382        348 DIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVT  385 (392)
T ss_pred             HHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence            99999999998888888899999999887776654443

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.70  E-value=1e-06  Score=88.98  Aligned_cols=116  Identities=12%  Similarity=0.033  Sum_probs=72.9

Q ss_pred             HHHHHHHHHh-hchhHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHhhhhhhhhhhcccccCCCc--hhhHHh
Q 013910          286 LLTAALLVDR-VGRKLSMTIMFIFVCIFLLPLVTLQSNI-LLTALLSGARMFSMGTFIIANIFAPEIYPTSM--RSTGAG  361 (434)
Q Consensus       286 ~~~~~~l~dr-~gRR~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~--R~~a~g  361 (434)
                      ..++|+++|| +|||+.+..+.++..+.........+.. ..........+......+....+.+|.+|++.  |..+.+
T Consensus        74 ~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~  153 (500)
T PRK09584         74 VAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFT  153 (500)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcch
Confidence            3578999999 5999999888776665544333322111 11111111111111123445677899998643  456788


Q ss_pred             HHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHH
Q 013910          362 VAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLS  401 (434)
Q Consensus       362 i~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~  401 (434)
                      +.+...++|+.++|.+.+++.+..|....+.+.++...++
T Consensus       154 ~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~  193 (500)
T PRK09584        154 MYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLIT  193 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence            8899999999999999998888766655665555433443

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.69  E-value=1.8e-06  Score=87.05  Aligned_cols=138  Identities=19%  Similarity=0.107  Sum_probs=90.1

Q ss_pred             HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHH---hh--hhhHHHHHHHHHHHHHHhhhhhhhhhhcccc
Q 013910          276 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLV---TL--QSNILLTALLSGARMFSMGTFIIANIFAPEI  350 (434)
Q Consensus       276 ~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El  350 (434)
                      ....+-.++-.+.+|.+.||+.||+.++.+-++..+....+.   ..  .+.+....+.+....+.....+...++.+|+
T Consensus        52 ~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~l  131 (524)
T PF05977_consen   52 AASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPEL  131 (524)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            333445556677899999999999999887666554332221   11  1222222222222222223346677889999


Q ss_pred             cCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccC
Q 013910          351 YPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  413 (434)
Q Consensus       351 ~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~et~  413 (434)
                      .|.+.-..|+++.....++..+++|.+.+.++...|....+.+-+++.++........+++.+
T Consensus       132 V~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~  194 (524)
T PF05977_consen  132 VPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPPP  194 (524)
T ss_pred             ccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Confidence            999999999999999999999999999998887666655666655555555555555554443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=98.68  E-value=3.6e-07  Score=91.29  Aligned_cols=138  Identities=20%  Similarity=0.086  Sum_probs=86.6

Q ss_pred             HHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhh--hh-HHHHHHHHHHHHHHhhhhhhhhhhccccc
Q 013910          275 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQ--SN-ILLTALLSGARMFSMGTFIIANIFAPEIY  351 (434)
Q Consensus       275 ~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~El~  351 (434)
                      .....++..++.++.|.++||+|||+.++.+.++..+..+......  .+ +..........+......+....+.+|.+
T Consensus        77 ~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~  156 (481)
T TIGR00879        77 VSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIA  156 (481)
T ss_pred             HHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccC
Confidence            3455577788999999999999999998887766655444332211  11 11111111111222233456778889999


Q ss_pred             CCCchhhHHhHHHHhhhHhHhhHHHHH---HHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccC
Q 013910          352 PTSMRSTGAGVAYAVGRIGGMVCPLVA---VGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  413 (434)
Q Consensus       352 P~~~R~~a~gi~~~~~~ig~~~~p~~~---~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~et~  413 (434)
                      |++.|+.+.++.+....+|..+++.+.   ....+..+....+.+.+...++..+ ..++.||+.
T Consensus       157 ~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~-~~~~l~~~~  220 (481)
T TIGR00879       157 PKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFL-GLFFLPESP  220 (481)
T ss_pred             ChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHH-HHhcCCCCh
Confidence            999999999999999999999999877   3222333444455554444444433 344456753

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=98.66  E-value=2.6e-07  Score=87.46  Aligned_cols=138  Identities=17%  Similarity=0.122  Sum_probs=106.1

Q ss_pred             HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCc
Q 013910          276 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSM  355 (434)
Q Consensus       276 ~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~  355 (434)
                      ...++..-++-.+.|.++||.+.|..+..+.++++++.+.+.+..+.....++......+-...++.+.-..+.-||++.
T Consensus        71 s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e  150 (448)
T COG2271          71 SAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE  150 (448)
T ss_pred             HHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc
Confidence            34445667888999999999999999999999999888877765543333333333333322335777888889999999


Q ss_pred             hhhHHhHHHHhhhHhHhhHHHHH--HHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccC
Q 013910          356 RSTGAGVAYAVGRIGGMVCPLVA--VGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  413 (434)
Q Consensus       356 R~~a~gi~~~~~~ig~~~~p~~~--~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~et~  413 (434)
                      |++..++=+...++|+.+.|.+.  ..+.+..+....+++-++++++.+++.+++.+|+-
T Consensus       151 RG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~P  210 (448)
T COG2271         151 RGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRP  210 (448)
T ss_pred             cCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            99999999999999999988888  66666656667888999988888888888775543

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.66  E-value=4.4e-07  Score=92.39  Aligned_cols=135  Identities=17%  Similarity=0.183  Sum_probs=98.4

Q ss_pred             HHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCC
Q 013910          275 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTS  354 (434)
Q Consensus       275 ~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~  354 (434)
                      ..+..++.++|.++.|.++||+|||+++..+.++..++.+...+..+-.....+-+...++..+.....+++.+|+++++
T Consensus       124 ~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~  203 (521)
T KOG0255|consen  124 QSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPK  203 (521)
T ss_pred             HHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcc
Confidence            34445677889999999999999999999998888877766555554444444445555556677888999999999999


Q ss_pred             chhhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccC
Q 013910          355 MRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  413 (434)
Q Consensus       355 ~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~et~  413 (434)
                      .|+.+..+ ..+.+.++...+....++..  +....+++.....++..+. ++++||.+
T Consensus       204 ~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es~  258 (521)
T KOG0255|consen  204 QRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPESP  258 (521)
T ss_pred             hhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcCh
Confidence            99999999 88888888888888777665  2233344444444444333 66666764

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.65  E-value=3.3e-07  Score=91.91  Aligned_cols=135  Identities=10%  Similarity=0.021  Sum_probs=93.2

Q ss_pred             HHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCc
Q 013910          278 TSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTL--QSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSM  355 (434)
Q Consensus       278 ~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~  355 (434)
                      ..++..++.+.+|+++||+|||+.+..+.++.++..+.....  .........-+...+.....++....+.+|.+|++.
T Consensus        85 ~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~  164 (465)
T TIGR00894        85 HFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE  164 (465)
T ss_pred             HHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH
Confidence            345677888999999999999999988777666554433221  111111111111112222335667788999999999


Q ss_pred             hhhHHhHHHHhhhHhHhhHHHHHHHHhhh-cchhhHHHHHHHHHHHHHHHHHhccccc
Q 013910          356 RSTGAGVAYAVGRIGGMVCPLVAVGLVTS-CHQTAAILLLEALIVLSVVVILLIPFET  412 (434)
Q Consensus       356 R~~a~gi~~~~~~ig~~~~p~~~~~l~~~-~g~~~~~~~~~~~~~i~~~~~~~~~~et  412 (434)
                      |+++.|+......+|.+++|.+.+.+.+. .+....+++.++..++..+..+.+++|.
T Consensus       165 r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~  222 (465)
T TIGR00894       165 RSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADD  222 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999998888776 3666677777777666666666655543

>PRK03633 putative MFS family transporter protein; Provisional

Probab=98.63  E-value=2.9e-06  Score=82.69  Aligned_cols=110  Identities=14%  Similarity=-0.013  Sum_probs=72.5

Q ss_pred             HHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCC
Q 013910          275 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTS  354 (434)
Q Consensus       275 ~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~  354 (434)
                      .....++..++.++.+.++||+|||+.+..+..+..+.........+.+.................+.......+..|++
T Consensus        47 ~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~  126 (381)
T PRK03633         47 SSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSR  126 (381)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence            34445677888999999999999999998877776665544433332222222111111111122233334456778888


Q ss_pred             chhhHHhHHHHhhhHhHhhHHHHHHHHhhh
Q 013910          355 MRSTGAGVAYAVGRIGGMVCPLVAVGLVTS  384 (434)
Q Consensus       355 ~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~  384 (434)
                      .|+++.+..+....+|..++|.+.+.+.+.
T Consensus       127 ~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~  156 (381)
T PRK03633        127 NRGRLLAAYMMVYYLGTVLGQLLVSKVSTE  156 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            999999999999999999999888766543

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=98.62  E-value=2.2e-06  Score=85.69  Aligned_cols=130  Identities=15%  Similarity=0.051  Sum_probs=83.6

Q ss_pred             hhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhh-hhhhhhhcccccCCCchhh
Q 013910          280 FAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGT-FIIANIFAPEIYPTSMRST  358 (434)
Q Consensus       280 ~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~El~P~~~R~~  358 (434)
                      +...++..+.|+++||+|||+.++.+.++..+..+...+..+.+...........+..+. ......+..|.+| +.|++
T Consensus        65 ~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~  143 (455)
T TIGR00892        65 AVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPL  143 (455)
T ss_pred             HHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHH
Confidence            344566778999999999999888876666554443333222121111110010111121 2344456678886 67999


Q ss_pred             HHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhccc
Q 013910          359 GAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPF  410 (434)
Q Consensus       359 a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  410 (434)
                      +.|+.+....+|+.++|.+.+.+.+..+....+++.+++++++.+...++.+
T Consensus       144 a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~  195 (455)
T TIGR00892       144 ANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMRP  195 (455)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999988888887767667777777766665555544443

>TIGR00898 2A0119 cation transport protein

Probab=98.62  E-value=8.1e-07  Score=90.04  Aligned_cols=133  Identities=17%  Similarity=0.096  Sum_probs=88.6

Q ss_pred             HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCc
Q 013910          276 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSM  355 (434)
Q Consensus       276 ~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~  355 (434)
                      .+..++.++|.++.|.++||+|||+.+..+.++..+..+...+..+.+...+..+...+...+..+....+.+|.+|.+.
T Consensus       134 s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~  213 (505)
T TIGR00898       134 SCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ  213 (505)
T ss_pred             HHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccchHHHHHHHhheecChhh
Confidence            34456778899999999999999999988877776655544443332222222222222233346778889999999999


Q ss_pred             hhhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhccccc
Q 013910          356 RSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFET  412 (434)
Q Consensus       356 R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~et  412 (434)
                      |+.+.++......+|.+++|.+...+.+   ....+++.++..++..+.. ++.||+
T Consensus       214 r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~~~~~~-~~~~es  266 (505)
T TIGR00898       214 RAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFLLS-WFVPES  266 (505)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHH-HhcCCC
Confidence            9999999877777788777776543332   3345555666666665555 445675

>TIGR00899 2A0120 sugar efflux transporter

Probab=98.61  E-value=2.6e-07  Score=89.62  Aligned_cols=122  Identities=16%  Similarity=0.147  Sum_probs=95.4

Q ss_pred             hhhhhhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHHHHHH
Q 013910           19 LLEPLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTF   97 (434)
Q Consensus        19 ~~~~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~   97 (434)
                      ++.+++.||+|||+.+.++.....+......+.++...+.+.+++.|++.|... ....+..|..|+ +|+...++++..
T Consensus       253 ~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  331 (375)
T TIGR00899       253 LLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG-RAGAATTLYTNT  331 (375)
T ss_pred             HhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHH
Confidence            345679999999999888777665555555566788888889999998877643 445677788875 567999999999


Q ss_pred             HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcCC
Q 013910           98 WTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPE  141 (434)
Q Consensus        98 ~~~G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~~~~~lpE  141 (434)
                      ..+|..+++.+...+.+..+|+..|.+.++..++..+...+++|
T Consensus       332 ~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  375 (375)
T TIGR00899       332 GRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLLIKD  375 (375)
T ss_pred             HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHheecC
Confidence            99999999999888888889999999988877776665555543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=98.61  E-value=6.9e-07  Score=89.62  Aligned_cols=134  Identities=16%  Similarity=0.031  Sum_probs=84.2

Q ss_pred             HHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHh-----hhhhHHHHHHHHHHHHHHhhhhhhhhhhccccc
Q 013910          277 ITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT-----LQSNILLTALLSGARMFSMGTFIIANIFAPEIY  351 (434)
Q Consensus       277 ~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~  351 (434)
                      ...+...++.+++|+++||+|||+.+..+.++.++..+....     ..+............++....++....+.+|.+
T Consensus        72 ~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~  151 (467)
T PRK09556         72 GFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWT  151 (467)
T ss_pred             HHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHc
Confidence            344666788899999999999999988877666654443322     111111111111111222223456667889999


Q ss_pred             CCCchhhHHhHHHHhhhHhHhhHHHHHHHHhhhc---chhhHHHHHHHHHHHHHHHHHhccc
Q 013910          352 PTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSC---HQTAAILLLEALIVLSVVVILLIPF  410 (434)
Q Consensus       352 P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~---g~~~~~~~~~~~~~i~~~~~~~~~~  410 (434)
                      |++.|+++.|+....+.+|+++++.+...+....   +....+.+.++..++.++..+++.+
T Consensus       152 ~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~  213 (467)
T PRK09556        152 PRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGS  213 (467)
T ss_pred             CccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999888776554432   1223345555555555455555433

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.60  E-value=4.2e-06  Score=83.06  Aligned_cols=136  Identities=20%  Similarity=0.120  Sum_probs=79.6

Q ss_pred             HHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhh-h-------HHHHHHHHHHHHHHhhhhhhhhhhcc
Q 013910          277 ITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQS-N-------ILLTALLSGARMFSMGTFIIANIFAP  348 (434)
Q Consensus       277 ~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (434)
                      ...++..+|.+++|+++||+|||+.+..+.....+..+...+..+ .       ......-+...+...+.++....+.+
T Consensus        71 ~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~  150 (432)
T PRK10406         71 AGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMS  150 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHH
Confidence            334556689999999999999999998887777665554433211 1       01111111111222234567788999


Q ss_pred             cccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHh--------hhcchhhHHHHHHHHHHHHHHHHHhcccccC
Q 013910          349 EIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLV--------TSCHQTAAILLLEALIVLSVVVILLIPFETK  413 (434)
Q Consensus       349 El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~--------~~~g~~~~~~~~~~~~~i~~~~~~~~~~et~  413 (434)
                      |.+|++.|+.+.++.......|.++++.+...+.        +..|....+++-++..++. ++.....||++
T Consensus       151 e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~-~~~~~~~~e~~  222 (432)
T PRK10406        151 EVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA-LWLRRQLDETS  222 (432)
T ss_pred             HhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH-HHHHhcCCCCc
Confidence            9999999999988876655555555554433222        1234444555444444443 33334456654

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.60  E-value=1.4e-06  Score=87.53  Aligned_cols=137  Identities=14%  Similarity=0.034  Sum_probs=84.6

Q ss_pred             HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhh---------hhhH--H-HHHHHHHHHHHHhhhhhhh
Q 013910          276 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTL---------QSNI--L-LTALLSGARMFSMGTFIIA  343 (434)
Q Consensus       276 ~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~---------~~~~--~-~~~~~~~~~~~~~~~~~~~  343 (434)
                      ....++..++.++.|+++||+|||+.+..+..+..+..+.....         .+..  . ....-....+...+..+..
T Consensus        62 s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~  141 (479)
T PRK10077         62 ASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLS  141 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHH
Confidence            34456778899999999999999999988766655443322210         0111  1 1111111122223345667


Q ss_pred             hhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHh--------hhcchhhHHHHHHHHHHHHHHHHHhcccccC
Q 013910          344 NIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLV--------TSCHQTAAILLLEALIVLSVVVILLIPFETK  413 (434)
Q Consensus       344 ~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~--------~~~g~~~~~~~~~~~~~i~~~~~~~~~~et~  413 (434)
                      ..+.+|.+|++.|+++.++......+|..+++.+...+.        +..+....+++.++..++..+. .++.||+.
T Consensus       142 ~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~-~~~l~~s~  218 (479)
T PRK10077        142 PMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLML-LYFVPETP  218 (479)
T ss_pred             HHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHH-HHcCCCCc
Confidence            788999999999999999988887888877776544332        1223344555555555555444 44557764

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=98.58  E-value=5.9e-06  Score=79.00  Aligned_cols=133  Identities=16%  Similarity=0.123  Sum_probs=98.0

Q ss_pred             HHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCc
Q 013910          277 ITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQS-NILLTALLSGARMFSMGTFIIANIFAPEIYPTSM  355 (434)
Q Consensus       277 ~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~  355 (434)
                      ...++..++..+-..++||+.||++++..+.+..+..+......+ ......-... .+.....+++...+.+++.|++.
T Consensus        56 ~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~-g~a~G~f~~i~~~~a~~lvpp~~  134 (394)
T COG2814          56 AYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALA-GLAHGVFWSIAAALAARLVPPGK  134 (394)
T ss_pred             HHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCccc
Confidence            344666778888889999999999998776666554443332221 1121111222 22233456788889999999999


Q ss_pred             hhhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhccc
Q 013910          356 RSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPF  410 (434)
Q Consensus       356 R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  410 (434)
                      |++|.++...-..++.+++.-+..++-|..|...+|.+.+.+.+++.+..+...|
T Consensus       135 ~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         135 RGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             hhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999888888887767777778788888999999999999999998888

>PRK15075 citrate-proton symporter; Provisional

Probab=98.57  E-value=4.5e-06  Score=82.90  Aligned_cols=99  Identities=11%  Similarity=0.047  Sum_probs=64.2

Q ss_pred             hhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHH--------HHHHHHHHHHHHhhhhhhhhhhcccccCC
Q 013910          282 ELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNIL--------LTALLSGARMFSMGTFIIANIFAPEIYPT  353 (434)
Q Consensus       282 ~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~El~P~  353 (434)
                      ..+|.++.|+++||+|||+.++.+..+.++......+..+...        ..+.-+...+.....++....+.+|.+|+
T Consensus        69 ~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~  148 (434)
T PRK15075         69 RPLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATP  148 (434)
T ss_pred             hhhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCc
Confidence            3468889999999999999998887766655444433222110        01111111111112244556789999999


Q ss_pred             CchhhHHhHHHHhhhHhHhhHHHHHHH
Q 013910          354 SMRSTGAGVAYAVGRIGGMVCPLVAVG  380 (434)
Q Consensus       354 ~~R~~a~gi~~~~~~ig~~~~p~~~~~  380 (434)
                      +.|+++.++.....+++..+++.+.+.
T Consensus       149 ~~rg~~~~~~~~~~~~g~~~g~~~g~~  175 (434)
T PRK15075        149 GRKGFYTSWQSASQQVAVVFAALLGYL  175 (434)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999988877777666655443

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.55  E-value=5.9e-06  Score=78.46  Aligned_cols=143  Identities=17%  Similarity=0.152  Sum_probs=99.4

Q ss_pred             cchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHH--Hhhhhhh
Q 013910          267 QDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTL--QSNILLTALLSGARMF--SMGTFII  342 (434)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~  342 (434)
                      +....+....+..+.+.+..+.-+++.||+|.|+....++++..+-.+.+.+.  +...+.  ++..+.++  ..+-+..
T Consensus        47 S~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~--ll~~gll~G~~GasFav  124 (417)
T COG2223          47 SEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQ--LLVIGLLLGLAGASFAV  124 (417)
T ss_pred             CHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHH--HHHHHHHHhcccceehc
Confidence            33445566667777777888889999999999999888877766544444332  221111  11112111  2233566


Q ss_pred             hhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhhhcc---hhhHHHHHHHHHHHHHHHHHhccccc
Q 013910          343 ANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH---QTAAILLLEALIVLSVVVILLIPFET  412 (434)
Q Consensus       343 ~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g---~~~~~~~~~~~~~i~~~~~~~~~~et  412 (434)
                      .-...++-||++.+++|+|+.. .|++|..+..++.|.+....+   .+....++....++.++..++...|.
T Consensus       125 ~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~  196 (417)
T COG2223         125 GMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDV  196 (417)
T ss_pred             ccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            6778899999999999999999 999999999999988877666   45566677777777677766665443

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.55  E-value=3.2e-07  Score=85.51  Aligned_cols=134  Identities=16%  Similarity=0.085  Sum_probs=87.6

Q ss_pred             HhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhh
Q 013910          279 SFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRST  358 (434)
Q Consensus       279 ~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~  358 (434)
                      ++.+++.....|.++||.|||..+..|.+...+.........+-...++.-+.+. ...+-.++..++.+|+++.+.|+.
T Consensus        78 ~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~G-i~kgnl~v~rAiisdV~sek~r~l  156 (451)
T KOG2615|consen   78 SILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGG-IFKGNLSVIRAIISDVVSEKYRPL  156 (451)
T ss_pred             HHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccCchHHHHHHHHhhcChhhccc
Confidence            4667888899999999999999999987777765444333222111111011111 123455778899999999999999


Q ss_pred             HHhHHHHhhhHhHhhHHHHHHHHhh---hcchhhHHH---HHHHHHHHHHHHHHhcccccC
Q 013910          359 GAGVAYAVGRIGGMVCPLVAVGLVT---SCHQTAAIL---LLEALIVLSVVVILLIPFETK  413 (434)
Q Consensus       359 a~gi~~~~~~ig~~~~p~~~~~l~~---~~g~~~~~~---~~~~~~~i~~~~~~~~~~et~  413 (434)
                      +++.......+|-+++|.+.+++..   ..+.+..++   +..............+.|||-
T Consensus       157 ~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL  217 (451)
T KOG2615|consen  157 GMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETL  217 (451)
T ss_pred             eeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence            9999999999999999999888765   333322222   222222222344455667883

>TIGR00897 2A0118 polyol permease family

Probab=98.55  E-value=7.1e-06  Score=80.64  Aligned_cols=111  Identities=12%  Similarity=0.026  Sum_probs=70.2

Q ss_pred             HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHH---hhhhhHHHHH-HHHHHHHHHhhhhhhhhhhccccc
Q 013910          276 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLV---TLQSNILLTA-LLSGARMFSMGTFIIANIFAPEIY  351 (434)
Q Consensus       276 ~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~El~  351 (434)
                      ....+...++..+.|.++||+|||+.+..+..+.++..+...   ....+..... ..................+..|.+
T Consensus        55 ~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~  134 (402)
T TIGR00897        55 TLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNT  134 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhC
Confidence            344567788999999999999999999887776665433221   1111222111 111111111111223344567889


Q ss_pred             CCCchhhHHhHHHHhhhHhH-hhHHHHHHHHhhhcc
Q 013910          352 PTSMRSTGAGVAYAVGRIGG-MVCPLVAVGLVTSCH  386 (434)
Q Consensus       352 P~~~R~~a~gi~~~~~~ig~-~~~p~~~~~l~~~~g  386 (434)
                      |++.|+++.|+.++...+|. .++|.+.+.+.+..+
T Consensus       135 ~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g  170 (402)
T TIGR00897       135 KQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFG  170 (402)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            99999999999999988885 577877777666555

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=98.54  E-value=3.9e-05  Score=75.94  Aligned_cols=127  Identities=19%  Similarity=0.153  Sum_probs=80.0

Q ss_pred             chhhhhhh--hhHhhh---c-chHHH-HHHHHHHHHHHHHHhhcc----cHHHHHHHHHHHHhcCCCch-hhhhhhhhcc
Q 013910           15 CPKLLLEP--LYFIFA---F-SRMSI-LGGALVTFVAGLLSAFSP----NYISLLILRGLAGAGLGSGH-VFFSWFMEFV   82 (434)
Q Consensus        15 ~~~~~~~~--~~~~~~---G-Rr~~l-~~~~~~~~i~~~~~~~~~----~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~   82 (434)
                      .||.++-.  ..+|-+   | ||+.+ +++.++...+.+..+..+    +.....+.=++..+|....- +.-..+.|..
T Consensus        36 lPw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~  115 (433)
T PF03092_consen   36 LPWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLASFGYAFADVAADALVVELA  115 (433)
T ss_pred             CchHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHh
Confidence            45555433  477844   2 44444 445555444444444433    45555555566666655443 3345566776


Q ss_pred             CC--CcchhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH-HHhcCC
Q 013910           83 PP--SNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIF-IVFMPE  141 (434)
Q Consensus        83 p~--~~Rg~~~~~~~~~~~~G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~~-~~~lpE  141 (434)
                      .+  +.||...+.......+|.+++..+++.+.+..++|+.|.+.++...+..+. .+..+|
T Consensus       116 ~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e  177 (433)
T PF03092_consen  116 RREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEE  177 (433)
T ss_pred             hcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhh
Confidence            33  337888888888999999999999888888889999999887666655444 444555

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=98.51  E-value=4.6e-06  Score=81.68  Aligned_cols=124  Identities=12%  Similarity=-0.013  Sum_probs=80.0

Q ss_pred             HHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCch
Q 013910          277 ITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMR  356 (434)
Q Consensus       277 ~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R  356 (434)
                      ...++..++.+..+.++||+|||+++..+..+.++......+..+.......-....+......+....+..|.+| +.|
T Consensus        52 ~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~  130 (393)
T PRK09705         52 LPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRT  130 (393)
T ss_pred             HHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccc
Confidence            3345667788999999999999999999988888776665544332222111111111222223344556788887 679


Q ss_pred             hhHHhHHHHhhhHhHhhHHHHHHHHhhhc-chhhHHHHHHHHHHHH
Q 013910          357 STGAGVAYAVGRIGGMVCPLVAVGLVTSC-HQTAAILLLEALIVLS  401 (434)
Q Consensus       357 ~~a~gi~~~~~~ig~~~~p~~~~~l~~~~-g~~~~~~~~~~~~~i~  401 (434)
                      +.++|+.......|+.+++.+.+.+.+.. +....+.+++...++.
T Consensus       131 ~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~  176 (393)
T PRK09705        131 PLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVA  176 (393)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence            99999999888888888888887776643 3334444444444433

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=98.50  E-value=2.4e-06  Score=83.66  Aligned_cols=122  Identities=18%  Similarity=0.243  Sum_probs=87.7

Q ss_pred             hhHhhhcc-hHHHHHHHHHHHHHHHHH-h--h-cc-cHHHHHHHHHHHHhcCCCchhhhhhhhhccCCCcchhHHHHHHH
Q 013910           23 LYFIFAFS-RMSILGGALVTFVAGLLS-A--F-SP-NYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFST   96 (434)
Q Consensus        23 ~~~~~~GR-r~~l~~~~~~~~i~~~~~-~--~-~~-~~~~l~~~R~l~Gig~g~~~~~~~~~~E~~p~~~Rg~~~~~~~~   96 (434)
                      ++..|.|+ |+-++.+.++.+++.++= +  . .+ .-..++++|++.|+|.|...+.-.|++.....+.|-++.+....
T Consensus        93 ~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~  172 (488)
T KOG2325|consen   93 IWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSG  172 (488)
T ss_pred             ccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhh
Confidence            46778875 677888888888888664 2  2 23 56789999999999999887888899999999999999999888


Q ss_pred             HHHHHHHHHHHHHHHHhc--ccc-----------hHHHHHHHHHHHHHHHHH-HHhcCCChh
Q 013910           97 FWTFGSVSEAALAWIVMP--ILT-----------WRWLLALSAIPAFVLLIF-IVFMPESPR  144 (434)
Q Consensus        97 ~~~~G~~l~~~l~~~~~~--~~~-----------Wr~~f~~~~i~~~l~~~~-~~~lpESp~  144 (434)
                      +..+|..+||.++..+.+  ..|           +-.+-++..+..++.++. .+++.|.++
T Consensus       173 ~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~  234 (488)
T KOG2325|consen  173 GFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYR  234 (488)
T ss_pred             HHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeeccc
Confidence            888898888887766532  112           233445555555554433 445666654

>PRK09952 shikimate transporter; Provisional

Probab=98.50  E-value=1.2e-05  Score=79.92  Aligned_cols=135  Identities=16%  Similarity=0.039  Sum_probs=80.6

Q ss_pred             HHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhH----H----HHHHHHHHHHHHhhhhhhhhhhccc
Q 013910          278 TSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNI----L----LTALLSGARMFSMGTFIIANIFAPE  349 (434)
Q Consensus       278 ~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~~~~E  349 (434)
                      ..+...+|.++.|+++||+|||+.+..+..+.++..+...+..+..    +    ....-+...+...+.++....+.+|
T Consensus        73 ~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e  152 (438)
T PRK09952         73 GFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVE  152 (438)
T ss_pred             HHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHH
Confidence            3355678889999999999999999988877776655544322211    1    1111111112222334556778899


Q ss_pred             ccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhh--------hcchhhHHHHHHHHHHHHHHHHHhcccccC
Q 013910          350 IYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVT--------SCHQTAAILLLEALIVLSVVVILLIPFETK  413 (434)
Q Consensus       350 l~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~--------~~g~~~~~~~~~~~~~i~~~~~~~~~~et~  413 (434)
                      .+|++.|+...+.......+|..+++.+...+..        ..+....+++.++..++ .+......||++
T Consensus       153 ~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~-~~~l~~~~~es~  223 (438)
T PRK09952        153 SAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLI-ALWVRNGMEESA  223 (438)
T ss_pred             hCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHH-HHHHHHhCCCCh
Confidence            9999999998888877777777776655443321        22334455544443333 233333446653

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.49  E-value=9.3e-07  Score=82.98  Aligned_cols=137  Identities=19%  Similarity=0.158  Sum_probs=103.7

Q ss_pred             HhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHhhhhhhhhhhcccccCCCc-h
Q 013910          279 SFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNI-LLTALLSGARMFSMGTFIIANIFAPEIYPTSM-R  356 (434)
Q Consensus       279 ~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~-R  356 (434)
                      .+.+++...+.|.+.||+|+|..+++++++.....+.+.+.++.. ..++-. ...............+.++.||.+. |
T Consensus       116 A~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~-LQgvgsA~~~tsglamlAd~f~~d~er  194 (464)
T KOG3764|consen  116 ALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARS-LQGVGSAFADTSGLAMLADVFPEDNER  194 (464)
T ss_pred             HHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHH-HhhhhHHHHHhhhHHHHHHHcccchhh
Confidence            466777788899999999999999999888877666655533221 111111 1111112223445678889999966 7


Q ss_pred             hhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccCCcc
Q 013910          357 STGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKE  416 (434)
Q Consensus       357 ~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~et~~~~  416 (434)
                      ++++|+.-.+..+|-.++|.+.+.+++..|...+|++.++++++.....++..+.++.++
T Consensus       195 ~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~  254 (464)
T KOG3764|consen  195 GSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDP  254 (464)
T ss_pred             hHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCc
Confidence            999999999999999999999998999889999999999999999999988886666554

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.46  E-value=1.1e-05  Score=90.05  Aligned_cols=108  Identities=18%  Similarity=0.010  Sum_probs=72.9

Q ss_pred             HHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHh---hhhhHHHHHHHHHHHHHHhhhhhhhhhhcccccCC
Q 013910          277 ITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT---LQSNILLTALLSGARMFSMGTFIIANIFAPEIYPT  353 (434)
Q Consensus       277 ~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~  353 (434)
                      +..+..+++.+++|.++||+|||++++.+.++..+..+....   ..+.+...+..+...++.....+....+.+|++|.
T Consensus        55 ~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~  134 (1146)
T PRK08633         55 LFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGK  134 (1146)
T ss_pred             HHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCc
Confidence            344566788889999999999999998776554433222211   11112111111111122223345667889999999


Q ss_pred             CchhhHHhHHHHhhhHhHhhHHHHHHHHhhh
Q 013910          354 SMRSTGAGVAYAVGRIGGMVCPLVAVGLVTS  384 (434)
Q Consensus       354 ~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~  384 (434)
                      +.|+.++|+......+|.+++|.+.+.+.+.
T Consensus       135 ~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~  165 (1146)
T PRK08633        135 ENLSRANGLLEAFTIVAILAGTALFSFLFES  165 (1146)
T ss_pred             ccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999988877654

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.45  E-value=1.6e-05  Score=88.87  Aligned_cols=136  Identities=15%  Similarity=-0.092  Sum_probs=82.0

Q ss_pred             HHHhhhhhHHHHHHHHHHhhchhHHHHHHHHH--HHHHHHHHHhh-hhhHHHHHHHHHHHHHHhhhhhhhhhhcccccCC
Q 013910          277 ITSFAELPGLLTAALLVDRVGRKLSMTIMFIF--VCIFLLPLVTL-QSNILLTALLSGARMFSMGTFIIANIFAPEIYPT  353 (434)
Q Consensus       277 ~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~  353 (434)
                      +..+..++...++|.++||+|||+++......  ....+..+... .+.+...+..+....+.....+....+..|++|.
T Consensus        60 ~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~  139 (1140)
T PRK06814         60 VFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNK  139 (1140)
T ss_pred             HHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCc
Confidence            33455667788899999999999976332111  11111111111 2222222222222222333456778899999999


Q ss_pred             CchhhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccC
Q 013910          354 SMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  413 (434)
Q Consensus       354 ~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~et~  413 (434)
                      +.|+.++|+..+...+|.+++|.+.+.+.+..+....+ +..+...+.+++..+..|+++
T Consensus       140 ~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  198 (1140)
T PRK06814        140 DELLGANALVEAGTFIAILLGTIIGGLATISGNFVILV-ALLMGIAVLGWLASLFIPKTG  198 (1140)
T ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHH-HHHHHHHHHHHHHHhhCCCCC
Confidence            99999999999999999999999999887765544344 333333333333334445553

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.44  E-value=1.9e-05  Score=77.76  Aligned_cols=109  Identities=13%  Similarity=-0.007  Sum_probs=72.2

Q ss_pred             HHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhh--hhhHH-HHHHHHHHHHHHhhhhhhhhhhcccc
Q 013910          274 NVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTL--QSNIL-LTALLSGARMFSMGTFIIANIFAPEI  350 (434)
Q Consensus       274 ~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~El  350 (434)
                      ......++..++.+..+++.||+|||+.+..+..+.++........  .++.. .....+..........+....+..|+
T Consensus        43 l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~  122 (410)
T TIGR00885        43 VQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVM  122 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHH
Confidence            3345556778888999999999999999998877766654433211  11111 11111111111112233445567788


Q ss_pred             cCCCchhhHHhHHHHhhhHhHhhHHHHHHHHh
Q 013910          351 YPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLV  382 (434)
Q Consensus       351 ~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~  382 (434)
                      .|++.|++..++.+.+..+|+.++|.+.+.+.
T Consensus       123 ~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~  154 (410)
T TIGR00885       123 GPESTATRRLNLAQSFNPFGSIIGMVVAQQLI  154 (410)
T ss_pred             CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999998887664

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.39  E-value=3.1e-05  Score=78.21  Aligned_cols=129  Identities=19%  Similarity=0.216  Sum_probs=84.5

Q ss_pred             hHHHHHHHHHHhh-----chhHHHH-HHHHHHHHHHHHHHhhh--hh-HHHHHHHHHHHHHHhhhhhhhhhhcccccCCC
Q 013910          284 PGLLTAALLVDRV-----GRKLSMT-IMFIFVCIFLLPLVTLQ--SN-ILLTALLSGARMFSMGTFIIANIFAPEIYPTS  354 (434)
Q Consensus       284 ~g~~~~~~l~dr~-----gRR~~~~-~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~  354 (434)
                      .+.++.+.++||+     |||+..+ .+.+...+....+.+..  .+ +..........++..........+.+|.+|++
T Consensus        60 ~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~  139 (491)
T PRK11010         60 VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAE  139 (491)
T ss_pred             HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence            5778899999999     9998644 44444444433333321  11 12211112222222333455678899999999


Q ss_pred             chhhHHhHHHHhhhHhHhhHHHHHHHHhh-hcchhhHHHHHHHHHHHHHHHHHhcccccC
Q 013910          355 MRSTGAGVAYAVGRIGGMVCPLVAVGLVT-SCHQTAAILLLEALIVLSVVVILLIPFETK  413 (434)
Q Consensus       355 ~R~~a~gi~~~~~~ig~~~~p~~~~~l~~-~~g~~~~~~~~~~~~~i~~~~~~~~~~et~  413 (434)
                      .|+++.++.....++|.++++.+...+.+ ..|....+++.++..++..+..++ .||+.
T Consensus       140 ~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~-~~e~~  198 (491)
T PRK11010        140 ERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLL-APEPT  198 (491)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHh-cCCCc
Confidence            99999999999999999999988887776 346666777777777766555555 46654

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.37  E-value=4e-05  Score=76.23  Aligned_cols=139  Identities=10%  Similarity=-0.024  Sum_probs=84.0

Q ss_pred             HHHHHhhhhhHHHHHHHHHH----hhchhHHHHHHHHHHH-HHHHHHHhhhh-------------hHHHHHHHH----HH
Q 013910          275 VFITSFAELPGLLTAALLVD----RVGRKLSMTIMFIFVC-IFLLPLVTLQS-------------NILLTALLS----GA  332 (434)
Q Consensus       275 ~~~~~~~~~~g~~~~~~l~d----r~gRR~~~~~~~~~~~-~~~~~~~~~~~-------------~~~~~~~~~----~~  332 (434)
                      ..+..+..++...+.|.++|    |+|||+.++....+.. +.+..+.+..+             .........    ..
T Consensus        45 ~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~ll  124 (477)
T TIGR01301        45 WLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWIL  124 (477)
T ss_pred             HHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHH
Confidence            34555677788888999999    5999998876533333 33333322111             011101111    11


Q ss_pred             HHHHhhhhhhhhhhcccccCCCch--hhHHhHHHHhhhHhHhhHHHHHHHHh--hhc-------------chhhHHHHHH
Q 013910          333 RMFSMGTFIIANIFAPEIYPTSMR--STGAGVAYAVGRIGGMVCPLVAVGLV--TSC-------------HQTAAILLLE  395 (434)
Q Consensus       333 ~~~~~~~~~~~~~~~~El~P~~~R--~~a~gi~~~~~~ig~~~~p~~~~~l~--~~~-------------g~~~~~~~~~  395 (434)
                      -+..........++.+|+.|++.|  ..+.++.+.+..+|+++++.+.+...  +..             +....+++-+
T Consensus       125 d~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a  204 (477)
T TIGR01301       125 DVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDI  204 (477)
T ss_pred             HHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHH
Confidence            112222344567789999999876  57888888888898888887655321  110             1234456666


Q ss_pred             HHHHHHHHHHHhcccccC
Q 013910          396 ALIVLSVVVILLIPFETK  413 (434)
Q Consensus       396 ~~~~i~~~~~~~~~~et~  413 (434)
                      ++.+++.++..+..+|..
T Consensus       205 ~~l~i~~l~t~~~v~E~~  222 (477)
T TIGR01301       205 ILLAILTYIALSAVKENP  222 (477)
T ss_pred             HHHHHHHHHHeeeeeccC
Confidence            777788888888877864

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.36  E-value=8.8e-06  Score=80.19  Aligned_cols=125  Identities=18%  Similarity=0.135  Sum_probs=86.4

Q ss_pred             hhhhhhhHhhhcchHHHHHHHHHHHHHHHHHhhc---ccHH------HHHHHHHHHHh--cCCCchhhhhhhhhccCCCc
Q 013910           18 LLLEPLYFIFAFSRMSILGGALVTFVAGLLSAFS---PNYI------SLLILRGLAGA--GLGSGHVFFSWFMEFVPPSN   86 (434)
Q Consensus        18 ~~~~~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~---~~~~------~l~~~R~l~Gi--g~g~~~~~~~~~~E~~p~~~   86 (434)
                      .+..|+..||+|||+.++.+..+..+..++....   .+..      ..+++.++-.+  +.|.+++.+-+.+|.+|++.
T Consensus       322 t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~  401 (485)
T KOG0569|consen  322 TLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSA  401 (485)
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccc
Confidence            3567789999999999999999988877665433   2222      12445554444  45555666666789999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH-HHHHhcCCCh
Q 013910           87 RGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLL-IFIVFMPESP  143 (434)
Q Consensus        87 Rg~~~~~~~~~~~~G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~-~~~~~lpESp  143 (434)
                      |..+.++.....-+...+....-..+-+..|= +.|++..+|+.+.. ..++++||+.
T Consensus       402 R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETk  458 (485)
T KOG0569|consen  402 RSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETK  458 (485)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccC
Confidence            99999888777777776655444444333333 67777777777764 4567799984

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.36  E-value=6.8e-07  Score=85.55  Aligned_cols=143  Identities=13%  Similarity=0.020  Sum_probs=99.3

Q ss_pred             HHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCch
Q 013910          277 ITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMR  356 (434)
Q Consensus       277 ~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R  356 (434)
                      ...+...++..++|++.||.+|++++.+|..+-.+..+...+...-|...++-......-....++...+.+|.||...|
T Consensus        76 vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~R  155 (493)
T KOG1330|consen   76 VFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKR  155 (493)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhh
Confidence            33455667888999999999999999998888777666555443223322222221112223456778889999999999


Q ss_pred             hhHHhHHHHhhhHhHhhHHHHHHHHhhhcc-hhhHHHHHHHHHHHHHHHHHhcccccCCccccc
Q 013910          357 STGAGVAYAVGRIGGMVCPLVAVGLVTSCH-QTAAILLLEALIVLSVVVILLIPFETKGKELVN  419 (434)
Q Consensus       357 ~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g-~~~~~~~~~~~~~i~~~~~~~~~~et~~~~~~e  419 (434)
                      ++++++.+.....|+.++-.....+...++ ..+++..-+++.++.+++..++.+|...+.-+|
T Consensus       156 s~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~  219 (493)
T KOG1330|consen  156 SRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDE  219 (493)
T ss_pred             hHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCcccccccc
Confidence            999999999998888776554443333333 346677788888888888888887876544443

>TIGR00901 2A0125 AmpG-related permease

Probab=98.35  E-value=1.6e-05  Score=76.61  Aligned_cols=128  Identities=23%  Similarity=0.215  Sum_probs=81.0

Q ss_pred             HHHHHHHHHhh-----chhHHHH-HHHHHHHHHHHHHHhhh--hh-HHHHHHHHHHHHHHhhhhhhhhhhcccccCCCch
Q 013910          286 LLTAALLVDRV-----GRKLSMT-IMFIFVCIFLLPLVTLQ--SN-ILLTALLSGARMFSMGTFIIANIFAPEIYPTSMR  356 (434)
Q Consensus       286 ~~~~~~l~dr~-----gRR~~~~-~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R  356 (434)
                      ..+.|.++||+     |||+.++ .+.+..++....+.+..  .. +...........+..........+.+|.+|++.|
T Consensus        38 ~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r  117 (356)
T TIGR00901        38 KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEEL  117 (356)
T ss_pred             HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhh
Confidence            67889999997     8888754 44444444433333321  11 1111111111122222235567788999999999


Q ss_pred             hhHHhHHHHhhhHhHhhHHHHHHHHhhhcc--------hhhHHHHHHHHHHHHHHHHHhcccccC
Q 013910          357 STGAGVAYAVGRIGGMVCPLVAVGLVTSCH--------QTAAILLLEALIVLSVVVILLIPFETK  413 (434)
Q Consensus       357 ~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g--------~~~~~~~~~~~~~i~~~~~~~~~~et~  413 (434)
                      +.+.|+......+|.++++.+.+.+....+        ....+++.+++.++..+...+..||.+
T Consensus       118 ~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~  182 (356)
T TIGR00901       118 GYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQ  182 (356)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence            999999998888999999988877766555        445566666666666655555556653

>TIGR00883 2A0106 metabolite-proton symporter

Probab=98.35  E-value=1e-05  Score=78.67  Aligned_cols=101  Identities=24%  Similarity=0.232  Sum_probs=66.3

Q ss_pred             hhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhH----HHHHHHHHHHH----HHhhhhhhhhhhcccccC
Q 013910          281 AELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNI----LLTALLSGARM----FSMGTFIIANIFAPEIYP  352 (434)
Q Consensus       281 ~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~----~~~~~~~~~~~~~~El~P  352 (434)
                      ...++.++.|+++||+|||+.+..+.++..+.........+..    +.........+    ......+....+.+|.+|
T Consensus        47 ~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~  126 (394)
T TIGR00883        47 ARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAP  126 (394)
T ss_pred             HhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCC
Confidence            3356788999999999999999888777665544433322111    10011111111    111223455678899999


Q ss_pred             CCchhhHHhHHHHhhhHhHhhHHHHHHHH
Q 013910          353 TSMRSTGAGVAYAVGRIGGMVCPLVAVGL  381 (434)
Q Consensus       353 ~~~R~~a~gi~~~~~~ig~~~~p~~~~~l  381 (434)
                      .+.|+...++......+|.++++.+...+
T Consensus       127 ~~~r~~~~~~~~~~~~~G~~i~~~~~~~~  155 (394)
T TIGR00883       127 PGKRGFYGSFQQVGAPVGLLLAALTVLLL  155 (394)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999988888888888766543

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.32  E-value=0.00048  Score=67.51  Aligned_cols=91  Identities=15%  Similarity=0.091  Sum_probs=69.6

Q ss_pred             hhhhhhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCchhh-hhhhhhccCCCcchhHHHHHHHH
Q 013910           19 LLEPLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVF-FSWFMEFVPPSNRGKWMVVFSTF   97 (434)
Q Consensus        19 ~~~~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~~~~-~~~~~E~~p~~~Rg~~~~~~~~~   97 (434)
                      |..|-..|+.|.|+.+.++...+...-...-+ +|-.-+++.-.+.|+|.+.-.+. ..|++|.++++.+.+..++.=..
T Consensus        68 l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~tie~Nisi~Wai  146 (461)
T KOG3098|consen   68 LFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRETIERNISIFWAI  146 (461)
T ss_pred             HhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCChhhHHHHHHHHHHH
Confidence            88899999999999999999988876654434 45666888899999997764443 35789999999999888876555


Q ss_pred             HHHHHHHHHHHHH
Q 013910           98 WTFGSVSEAALAW  110 (434)
Q Consensus        98 ~~~G~~l~~~l~~  110 (434)
                      ...+.+.|+.+-.
T Consensus       147 ~~~~li~Ggi~l~  159 (461)
T KOG3098|consen  147 GQSSLIIGGIILF  159 (461)
T ss_pred             HHHHHHhhhHhhe
Confidence            5556666655433

>TIGR00896 CynX cyanate transporter

Probab=98.31  E-value=2.9e-05  Score=74.85  Aligned_cols=108  Identities=13%  Similarity=0.016  Sum_probs=67.5

Q ss_pred             HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCc
Q 013910          276 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSM  355 (434)
Q Consensus       276 ~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~  355 (434)
                      ....+...++.+..++++||+|||+.+..+.+..++..... ...+........+...+...........+..|.+| +.
T Consensus        42 s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~  119 (355)
T TIGR00896        42 ALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QR  119 (355)
T ss_pred             HHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-ch
Confidence            34456677888999999999999999888766554433332 22221211111111111111112234456678887 57


Q ss_pred             hhhHHhHHHHhhhHhHhhHHHHHHHHhhhc
Q 013910          356 RSTGAGVAYAVGRIGGMVCPLVAVGLVTSC  385 (434)
Q Consensus       356 R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~  385 (434)
                      |+++.|+.+....+|..+++.+.+.+.+..
T Consensus       120 ~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~  149 (355)
T TIGR00896       120 VGLMTGLYSMALMGGAALAAAATVPLAQHS  149 (355)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999988899988888877766543

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=98.30  E-value=5.6e-06  Score=80.78  Aligned_cols=112  Identities=15%  Similarity=0.054  Sum_probs=93.0

Q ss_pred             hhhhhhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHHHH-H
Q 013910           19 LLEPLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFS-T   96 (434)
Q Consensus        19 ~~~~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~-~   96 (434)
                      ++.+++.||+|+|+.+.++.+...+..++.++++|...+++.++++|++.|... ....|+.+. |+++|+...++++ .
T Consensus       258 ~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~  336 (382)
T TIGR00902       258 AFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNAL  336 (382)
T ss_pred             HHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHH
Confidence            455678999999999999999999999889999999999999999999998865 445678877 9999999999986 5


Q ss_pred             HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Q 013910           97 FWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVL  132 (434)
Q Consensus        97 ~~~~G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~  132 (434)
                      ...+|.++++.+++.+.+..++ ..|...++.+++.
T Consensus       337 ~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~  371 (382)
T TIGR00902       337 AMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAA  371 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHH
Confidence            7889999999999998888887 4455555554443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.29  E-value=0.0021  Score=61.47  Aligned_cols=106  Identities=11%  Similarity=0.119  Sum_probs=67.9

Q ss_pred             hhHhhhc-----chHHHHHHHHHHHHH-HHHHhh-----cc--------cH---HHHHHHHHHHHhcCCCchh-hhhhhh
Q 013910           23 LYFIFAF-----SRMSILGGALVTFVA-GLLSAF-----SP--------NY---ISLLILRGLAGAGLGSGHV-FFSWFM   79 (434)
Q Consensus        23 ~~~~~~G-----Rr~~l~~~~~~~~i~-~~~~~~-----~~--------~~---~~l~~~R~l~Gig~g~~~~-~~~~~~   79 (434)
                      ..+|+++     ||..+++.-...... ..+..+     +.        .+   ....+.=.+.|+|.+...+ ..+..+
T Consensus        36 ~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~  115 (403)
T PF03209_consen   36 HRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLA  115 (403)
T ss_pred             cccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHH
Confidence            4899999     887776655444332 222222     11        11   1234444566777766543 445778


Q ss_pred             hccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhcc-cchHHHHHHHHHH
Q 013910           80 EFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPI-LTWRWLLALSAIP  128 (434)
Q Consensus        80 E~~p~~~Rg~~~~~~~~~~~~G~~l~~~l~~~~~~~-~~Wr~~f~~~~i~  128 (434)
                      |.+|+|+|++..++.-....+|.++++.+...+.+. ..=|..-.+..+.
T Consensus       116 D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a  165 (403)
T PF03209_consen  116 DLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVA  165 (403)
T ss_pred             hcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHH
Confidence            999999999999999888999999999887766543 3444444444433

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK10133 L-fucose transporter; Provisional

Probab=98.25  E-value=0.00018  Score=71.60  Aligned_cols=110  Identities=13%  Similarity=0.045  Sum_probs=69.7

Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHH---hhhhhHHHHHHHHHHHHHHhhhhhhhhhhccc
Q 013910          273 INVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLV---TLQSNILLTALLSGARMFSMGTFIIANIFAPE  349 (434)
Q Consensus       273 ~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E  349 (434)
                      .......++..++.+..+.++||+|||+.+..+..+..+..+...   ...+........+...+...........+..|
T Consensus        65 l~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~  144 (438)
T PRK10133         65 LIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTV  144 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            344455677788999999999999999999988777666544321   11111111111111111112223444555668


Q ss_pred             ccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHh
Q 013910          350 IYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLV  382 (434)
Q Consensus       350 l~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~  382 (434)
                      ..|.+.|....++.+.+..+|..++|.+...+.
T Consensus       145 ~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~  177 (438)
T PRK10133        145 LGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_pred             hCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            877777777889999888899988887765443

>PTZ00207 hypothetical protein; Provisional

Probab=98.24  E-value=0.00013  Score=74.40  Aligned_cols=122  Identities=11%  Similarity=0.150  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhh-----hhHHHHHH-HHHHHHHHhhhhhhhhhhcccccCCCchhh
Q 013910          285 GLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQ-----SNILLTAL-LSGARMFSMGTFIIANIFAPEIYPTSMRST  358 (434)
Q Consensus       285 g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~El~P~~~R~~  358 (434)
                      ..+.+|++.||+|||+++.++.++..+..+......     .+.+...+ ...........+........+.|| +.|++
T Consensus        77 ~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~  155 (591)
T PTZ00207         77 FLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGA  155 (591)
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHH
Confidence            445689999999999999988877776554433321     11221111 111111111123344555678887 67999


Q ss_pred             HHhHHHHhhhHhHhh-HHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcc
Q 013910          359 GAGVAYAVGRIGGMV-CPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIP  409 (434)
Q Consensus       359 a~gi~~~~~~ig~~~-~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~  409 (434)
                      +.|+......+|+.+ +++....+.+  +....+++.++..++..+..+.+.
T Consensus       156 a~Gi~~~~~gLGsaI~~~l~~~l~~~--~~~~~fl~l~vl~~vv~ll~~~~v  205 (591)
T PTZ00207        156 VVAIMKTFTGLGSAILGSIQLAFFSD--NTSAYFFFLMSFALVVGILAIVFM  205 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHhhe
Confidence            999999999999875 4444443332  233445555655555444444433

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=98.20  E-value=0.00015  Score=70.76  Aligned_cols=115  Identities=20%  Similarity=0.164  Sum_probs=93.5

Q ss_pred             hhhHhh-hcchHHHHHHHHHHHHHHHHHhhc--ccHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCc--chhHHHHHH
Q 013910           22 PLYFIF-AFSRMSILGGALVTFVAGLLSAFS--PNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSN--RGKWMVVFS   95 (434)
Q Consensus        22 ~~~~~~-~GRr~~l~~~~~~~~i~~~~~~~~--~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~--Rg~~~~~~~   95 (434)
                      .+..|| +|+|++++++.++..++-++.+..  .+...++++-.+.++|.|... ...+.+.|..|++.  |=...+++.
T Consensus        82 G~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY  161 (498)
T COG3104          82 GWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFY  161 (498)
T ss_pred             HHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEE
Confidence            367886 699999999999999999888887  478899999999999999864 44567788888854  444466778


Q ss_pred             HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHH
Q 013910           96 TFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFI  136 (434)
Q Consensus        96 ~~~~~G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~~~  136 (434)
                      .+.++|.++++.+...+....+|...|...++-...-++..
T Consensus       162 ~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f  202 (498)
T COG3104         162 MGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIF  202 (498)
T ss_pred             EEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHH
Confidence            88999999999999999889999999999877555444433

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.17  E-value=3.6e-05  Score=78.20  Aligned_cols=136  Identities=20%  Similarity=0.176  Sum_probs=85.4

Q ss_pred             HHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHhhhhhhhhhhcccccCC
Q 013910          275 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNI-LLTALLSGARMFSMGTFIIANIFAPEIYPT  353 (434)
Q Consensus       275 ~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~El~P~  353 (434)
                      .....+++..|.+++|.++|++|||..+.++.+...+..+......+.. ....-.+.+ +...+...+..++.+|+.|+
T Consensus        95 ~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G-~g~G~~~~~~piy~sEiap~  173 (513)
T KOG0254|consen   95 TSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTG-LGVGGASVLAPVYISEIAPA  173 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhc-cchhhhhhcchhhHhhcCCh
Confidence            3455677889999999999999999999888777666555444333221 111111111 12223335678899999999


Q ss_pred             CchhhHHhHHHHhhhHhHhhHHHHHHHHhhhc--chhhHHHHHHHHHHHHHHHHHhcccccC
Q 013910          354 SMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSC--HQTAAILLLEALIVLSVVVILLIPFETK  413 (434)
Q Consensus       354 ~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~--g~~~~~~~~~~~~~i~~~~~~~~~~et~  413 (434)
                      +.|+.-.+.......+|..++ ++.++.....  +....+.+..+.+++..+. .++.||+.
T Consensus       174 ~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp  233 (513)
T KOG0254|consen  174 HIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPESP  233 (513)
T ss_pred             hhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCCh
Confidence            999999888887777655555 4455444322  2233444455555565555 56666753

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.16  E-value=4e-06  Score=77.94  Aligned_cols=120  Identities=15%  Similarity=0.147  Sum_probs=86.9

Q ss_pred             hhhhhhhhhHhhhcchHHHHHHHHHHHHHHHHHhhc--ccH--HHHHHHHHHHHhcCCCchhhhhhhhhccCCCcchhHH
Q 013910           16 PKLLLEPLYFIFAFSRMSILGGALVTFVAGLLSAFS--PNY--ISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWM   91 (434)
Q Consensus        16 ~~~~~~~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~--~~~--~~l~~~R~l~Gig~g~~~~~~~~~~E~~p~~~Rg~~~   91 (434)
                      |-+++.-+..||+|||+++.+..+++.++.++.-+.  +|.  ..++.+|++.-.+.+   +.|.|.-|++|.+.|+...
T Consensus       396 PGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fq---vaYvYtPEVyPTavRatgv  472 (528)
T KOG0253|consen  396 PGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQ---VAYVYTPEVYPTAVRATGV  472 (528)
T ss_pred             CchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchhe---EEEEecCcccchhhhhcch
Confidence            445667789999999999999999999988776544  332  457788887765544   4455667999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcC
Q 013910           92 VVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMP  140 (434)
Q Consensus        92 ~~~~~~~~~G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~~~~~lp  140 (434)
                      |.-....-+|.++.|.++  +....+=-.+..+.+...++..+...++|
T Consensus       473 GtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffP  519 (528)
T KOG0253|consen  473 GTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFP  519 (528)
T ss_pred             hhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeee
Confidence            999999999999999998  33222322333444444444555566666

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.16  E-value=0.00024  Score=69.78  Aligned_cols=130  Identities=18%  Similarity=0.170  Sum_probs=81.9

Q ss_pred             hhHHHHHHHHHHhh-----chhH-HHHHHHHHHHHHHHHHHhhh--hhHH-HHHHHHHHHHHHhhhhhhhhhhcccccCC
Q 013910          283 LPGLLTAALLVDRV-----GRKL-SMTIMFIFVCIFLLPLVTLQ--SNIL-LTALLSGARMFSMGTFIIANIFAPEIYPT  353 (434)
Q Consensus       283 ~~g~~~~~~l~dr~-----gRR~-~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~El~P~  353 (434)
                      .+...+.+.++||+     |||+ .+..+.....+.+..+....  .+.+ .....+....+.....+....+.+|.+|+
T Consensus        46 ~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~  125 (402)
T PRK11902         46 YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHP  125 (402)
T ss_pred             HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence            45678899999999     7876 45555555554444333321  1122 11111111122223345678889999999


Q ss_pred             CchhhHHhHHHHhhhHhHhhHHHHHHHHhhh-cchhhHHHHHHHHHHHHHHHHHhcccccC
Q 013910          354 SMRSTGAGVAYAVGRIGGMVCPLVAVGLVTS-CHQTAAILLLEALIVLSVVVILLIPFETK  413 (434)
Q Consensus       354 ~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~-~g~~~~~~~~~~~~~i~~~~~~~~~~et~  413 (434)
                      +.|+++.++......+|.++++.+...+.+. .+....+++.++..++..+... ..||++
T Consensus       126 ~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~~~-~~~e~~  185 (402)
T PRK11902        126 EERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALTTL-WAPEPE  185 (402)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHH-hcCCCc
Confidence            9999999999988888888888887777664 3555666666666666555443 445654

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.15  E-value=1.1e-05  Score=78.93  Aligned_cols=116  Identities=11%  Similarity=0.065  Sum_probs=92.9

Q ss_pred             hhhhhhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHH-HHH
Q 013910           19 LLEPLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVV-FST   96 (434)
Q Consensus        19 ~~~~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~-~~~   96 (434)
                      +..|.+.||+|||+.+.++..+..+...+...++|...+++.++++|++..... ....+..|..|++.|+...+. ++.
T Consensus       272 ~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~  351 (396)
T TIGR00882       272 FCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQF  351 (396)
T ss_pred             HHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHH
Confidence            444679999999999999988888877777788899889999999998864432 233456677888888887665 678


Q ss_pred             HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Q 013910           97 FWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLI  134 (434)
Q Consensus        97 ~~~~G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~  134 (434)
                      ...+|..+++.+++.+.+..||+..|.+.++..++..+
T Consensus       352 ~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~  389 (396)
T TIGR00882       352 AKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTL  389 (396)
T ss_pred             HHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            89999999999998888888999999998877666544

>TIGR00806 rfc RFC reduced folate carrier

Probab=98.14  E-value=7e-05  Score=73.30  Aligned_cols=128  Identities=16%  Similarity=0.158  Sum_probs=84.4

Q ss_pred             hhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhH
Q 013910          280 FAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTG  359 (434)
Q Consensus       280 ~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~a  359 (434)
                      ....+..+.+|+++||+|-|+.+..+.+..+++.+...+..+.....+.-+.. ....++....+.+....+|++.|+++
T Consensus        73 ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~ll-GvaEA~~~A~~syI~~WfP~kER~ra  151 (511)
T TIGR00806        73 YSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFY-SVTMAARIAYSSYIFSLVPPSRYQRA  151 (511)
T ss_pred             HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence            45567788999999999999999988877776655554433222111111111 12234433778888999999999999


Q ss_pred             HhHHHHhhhHhHhhHHHHHHHHhhhcchh-hH-HHHHH-HHHHHHHHHHHhcc
Q 013910          360 AGVAYAVGRIGGMVCPLVAVGLVTSCHQT-AA-ILLLE-ALIVLSVVVILLIP  409 (434)
Q Consensus       360 ~gi~~~~~~ig~~~~p~~~~~l~~~~g~~-~~-~~~~~-~~~~i~~~~~~~~~  409 (434)
                      .|+.++...+|.++++.+.+.+. ..|.. .. .-.+. +...++.++.+++|
T Consensus       152 tsi~~sg~~vG~~Ia~~L~qll~-s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP  203 (511)
T TIGR00806       152 AAYSRAAVLLGVFLSSVLGQLLV-TLGWISYSTLNIISLVFMTFSVFLALFLK  203 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHHHHHHHHHHHHhCC
Confidence            99999999999999998888743 33422 11 12233 44455556665654

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.13  E-value=0.00013  Score=73.88  Aligned_cols=123  Identities=16%  Similarity=0.143  Sum_probs=72.0

Q ss_pred             HHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCch
Q 013910          278 TSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQS-NILLTALLSGARMFSMGTFIIANIFAPEIYPTSMR  356 (434)
Q Consensus       278 ~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R  356 (434)
                      ..+....+..+.|.++|.+|||..++.+.++..+..+.....++ +.......+.+.  ..|...+.....+|+.|.+.|
T Consensus        87 ~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~Gv--gaG~~~~~~~~isEl~p~k~R  164 (599)
T PF06609_consen   87 WTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGV--GAGVQELAALAISELVPNKWR  164 (599)
T ss_pred             HHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHH--hhHHHHHHHHHHHHhcccchh
Confidence            34556667788899999999999999888777766655443222 122111111111  123333456668999999999


Q ss_pred             hhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHH
Q 013910          357 STGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSV  402 (434)
Q Consensus       357 ~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~  402 (434)
                      ..+.++.....-+....+|.+...+....+..+.+++..+...++.
T Consensus       165 ~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~  210 (599)
T PF06609_consen  165 GLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIAL  210 (599)
T ss_pred             hhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHH
Confidence            9888776654434444556655444333333344554444444443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.13  E-value=0.00018  Score=67.62  Aligned_cols=120  Identities=19%  Similarity=0.155  Sum_probs=76.0

Q ss_pred             hhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCch-hhhhhh-hhccCCCcchhHH-HHHHHHHH
Q 013910           23 LYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWF-MEFVPPSNRGKWM-VVFSTFWT   99 (434)
Q Consensus        23 ~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~~-~~~~~~-~E~~p~~~Rg~~~-~~~~~~~~   99 (434)
                      .+.||+|||+.-+..+++++++++ +-..+|+..|+++|++.|++...-. +.=+|+ .|.-.+..+..+. ..+.....
T Consensus        91 ~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf  169 (354)
T PF05631_consen   91 SLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATF  169 (354)
T ss_pred             HHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence            589999999999999999999886 5666899999999999999977643 444565 5775444333332 23322222


Q ss_pred             HHH----HHHHHHHHHHhcccc--hHHHHHHHHHHHHHHHHH-HHhcCCCh
Q 013910          100 FGS----VSEAALAWIVMPILT--WRWLLALSAIPAFVLLIF-IVFMPESP  143 (434)
Q Consensus       100 ~G~----~l~~~l~~~~~~~~~--Wr~~f~~~~i~~~l~~~~-~~~lpESp  143 (434)
                      +++    +.+..++-.+.+..+  =..+|....+..++..+. ....+|++
T Consensus       170 ~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENy  220 (354)
T PF05631_consen  170 FGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENY  220 (354)
T ss_pred             HHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccC
Confidence            332    333334444443333  367888776666555443 34456653

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=98.12  E-value=7e-05  Score=72.92  Aligned_cols=134  Identities=22%  Similarity=0.254  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHhh-chhHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHhhhh-hhhhhhcccccCCC--chh
Q 013910          285 GLLTAALLVDRV-GRKLSMTIMFIFVCIFLLPLVTLQ---SNILLTALLSGARMFSMGTF-IIANIFAPEIYPTS--MRS  357 (434)
Q Consensus       285 g~~~~~~l~dr~-gRR~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~El~P~~--~R~  357 (434)
                      ..+++||++||+ |+|+.++.+.++..+--+.+....   .....+.+....  +..|.+ +-...+.+|++|+.  .|-
T Consensus        77 t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~--iG~Gl~K~NiS~llg~ly~~~DprrD  154 (498)
T COG3104          77 TPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALII--VGTGLFKPNISSLLGELYPKDDPRRD  154 (498)
T ss_pred             HHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHH--hccccccccHHHHHHHhcCCCCcccC
Confidence            457899999995 999999988877766544443321   111111111111  112222 34566788999872  378


Q ss_pred             hHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccCCcccccc
Q 013910          358 TGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKELVNT  420 (434)
Q Consensus       358 ~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~et~~~~~~e~  420 (434)
                      .++++-++..++|++++|++.+++.+..+.+..+-..++-+.++.+..+..++..++....+.
T Consensus       155 ~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~  217 (498)
T COG3104         155 GGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPD  217 (498)
T ss_pred             CCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCC
Confidence            888999999999999999999998887776666777666667776666666555555544433

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=98.08  E-value=3e-05  Score=75.57  Aligned_cols=116  Identities=15%  Similarity=0.035  Sum_probs=88.1

Q ss_pred             hhhhhhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHHHH-H
Q 013910           19 LLEPLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFS-T   96 (434)
Q Consensus        19 ~~~~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~-~   96 (434)
                      ++.+++.||+|+|+.+..+.....++.++.+++++...+++..++.|++.+... ....++.+. +++++++..+.++ .
T Consensus       258 ~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  336 (382)
T PRK11128        258 AFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSAL  336 (382)
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHH
Confidence            445578999999999999988888877777888999999999999999877653 344566675 6666788888775 6


Q ss_pred             HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHH
Q 013910           97 FWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFI  136 (434)
Q Consensus        97 ~~~~G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~~~  136 (434)
                      ....|..+++.+++.+.+..++. .++..++..++.+..+
T Consensus       337 ~~~~g~~ig~~i~G~l~~~~g~~-~~~~~~~~~~~~~~~~  375 (382)
T PRK11128        337 AMGGSIAIMTVLSGFLYQHLGAG-VFWVMALVALPALFIR  375 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHHHHH
Confidence            66778888898888888877874 5555555555444433

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.04  E-value=6.4e-05  Score=74.60  Aligned_cols=99  Identities=20%  Similarity=0.220  Sum_probs=74.9

Q ss_pred             hhhhhHhhhcchHHHHHHHHHHHHHHHHHhhc-ccHHHHHHHHHHHHhcCCCch-hhhhhhhhccC-------CCcchhH
Q 013910           20 LEPLYFIFAFSRMSILGGALVTFVAGLLSAFS-PNYISLLILRGLAGAGLGSGH-VFFSWFMEFVP-------PSNRGKW   90 (434)
Q Consensus        20 ~~~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~-~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p-------~~~Rg~~   90 (434)
                      +.+++.||+|||+.+..+..+..++.++..+. ++...+.+..++.|++.+... ...++++|..+       ++++|..
T Consensus       276 ~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~  355 (437)
T TIGR00792       276 LFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLV  355 (437)
T ss_pred             HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHH
Confidence            34578999999999999988887776666554 456677888888898887653 44556667654       5668999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccch
Q 013910           91 MVVFSTFWTFGSVSEAALAWIVMPILTW  118 (434)
Q Consensus        91 ~~~~~~~~~~G~~l~~~l~~~~~~~~~W  118 (434)
                      .++++....+|..+++.+...+.+..||
T Consensus       356 ~~~~~~~~~~g~~lg~~i~g~ll~~~G~  383 (437)
T TIGR00792       356 YSVRTFVRKLGQALAGFLVGLILGIIGY  383 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            9999999999999999887776543333

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=98.02  E-value=0.0037  Score=60.33  Aligned_cols=119  Identities=22%  Similarity=0.177  Sum_probs=72.2

Q ss_pred             hhhhhhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCchhhhhhhhhccCCCcchhHHHHHHHHH
Q 013910           19 LLEPLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFW   98 (434)
Q Consensus        19 ~~~~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~   98 (434)
                      +..|++.||.-=+.-.....+++.++-++.++++|...=+++=.+.+++.|.+.+...=++...|+.    ..+.+..+.
T Consensus        77 l~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~~y~~~----~l~~wssGT  152 (402)
T PF02487_consen   77 LIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTHFYGKS----SLSAWSSGT  152 (402)
T ss_pred             HHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHHhcCcc----ccccccCCc
Confidence            4578888876433334555556777778889999998888888888888877654432233455542    345556666


Q ss_pred             HHHHHHHHHHHHHHhcccc--hHHHHHHHHHHHHHHHHHH-HhcCCC
Q 013910           99 TFGSVSEAALAWIVMPILT--WRWLLALSAIPAFVLLIFI-VFMPES  142 (434)
Q Consensus        99 ~~G~~l~~~l~~~~~~~~~--Wr~~f~~~~i~~~l~~~~~-~~lpES  142 (434)
                      ..+.++|+..-..+.. .+  -|..+.+....+++..+.+ +.+|.+
T Consensus       153 G~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~~~  198 (402)
T PF02487_consen  153 GGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLPSP  198 (402)
T ss_pred             ChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            6666666654333333 34  3666666655555444443 445543

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=97.95  E-value=7.6e-05  Score=69.16  Aligned_cols=113  Identities=27%  Similarity=0.310  Sum_probs=85.3

Q ss_pred             hhhhhhHhhhcchHHHHHHHHHHHHHHHHHhhccc--HHHHHHHHHHHHhcCCCc-hhhhhhhhhccCC-CcchhHHHHH
Q 013910           19 LLEPLYFIFAFSRMSILGGALVTFVAGLLSAFSPN--YISLLILRGLAGAGLGSG-HVFFSWFMEFVPP-SNRGKWMVVF   94 (434)
Q Consensus        19 ~~~~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~--~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~-~~Rg~~~~~~   94 (434)
                      .+.+.+.||+|||+.+..+......+.++.++..+  ...+++.|++.|++.|.. .....++.|+.|+ ++|+...+..
T Consensus        57 ~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (338)
T COG0477          57 LLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLV  136 (338)
T ss_pred             hhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence            45567999999998888888765666677777766  999999999999988864 3556778899988 7889888888


Q ss_pred             HH-HHHHHHHHHHHHHHHHhc--ccchHHHHHHHHHHHHH
Q 013910           95 ST-FWTFGSVSEAALAWIVMP--ILTWRWLLALSAIPAFV  131 (434)
Q Consensus        95 ~~-~~~~G~~l~~~l~~~~~~--~~~Wr~~f~~~~i~~~l  131 (434)
                      .. ...+|.++++.++..+..  ..+||+.|.........
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (338)
T COG0477         137 TLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLL  176 (338)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            77 577888888766554432  36899966666555443

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=97.94  E-value=1.8e-06  Score=87.41  Aligned_cols=88  Identities=16%  Similarity=0.236  Sum_probs=2.9

Q ss_pred             HHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhcc------------------
Q 013910           55 ISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPI------------------  115 (434)
Q Consensus        55 ~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~l~~~~~~~------------------  115 (434)
                      ..++++.++.|+|....+ ...+|+=|.+++++-+...|+......+|..+|.+++......                  
T Consensus       142 ~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~d  221 (539)
T PF03137_consen  142 YVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSD  221 (539)
T ss_dssp             ----------SSS-------------------------------------------------------------------
T ss_pred             HHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCC
Confidence            469999999999988765 5678999999999999999999999999999888887654210                  


Q ss_pred             c----chHHHHHHHHHHHHHHHHHHHhcCCC
Q 013910          116 L----TWRWLLALSAIPAFVLLIFIVFMPES  142 (434)
Q Consensus       116 ~----~Wr~~f~~~~i~~~l~~~~~~~lpES  142 (434)
                      .    .|-.-|.+.++..++..+..+.+|.+
T Consensus       222 p~WvGAWWLGfli~g~~~~l~aipl~~FPk~  252 (539)
T PF03137_consen  222 PRWVGAWWLGFLICGILLFLSAIPLFFFPKK  252 (539)
T ss_dssp             -------------------------------
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence            1    25556666666666665556666643

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.88  E-value=0.0002  Score=74.41  Aligned_cols=105  Identities=10%  Similarity=0.091  Sum_probs=70.1

Q ss_pred             HhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhh----------------------------h---------
Q 013910          279 SFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQ----------------------------S---------  321 (434)
Q Consensus       279 ~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~----------------------------~---------  321 (434)
                      .++..++.++.+++.||.+||+.+.++.++.++..+.....+                            .         
T Consensus        78 ~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~  157 (633)
T TIGR00805        78 EIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQ  157 (633)
T ss_pred             hHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccc
Confidence            355567778899999999999988777666665443332111                            0         


Q ss_pred             --------h--HHHHHHHHHHHHH----HhhhhhhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhh
Q 013910          322 --------N--ILLTALLSGARMF----SMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVT  383 (434)
Q Consensus       322 --------~--~~~~~~~~~~~~~----~~~~~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~  383 (434)
                              .  .....+++.+.+.    ....++....+..|.+|++.|+...|+.+....+|..+++.+.+.+.+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~  233 (633)
T TIGR00805       158 CPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQ  233 (633)
T ss_pred             cccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence                    0  0011112222221    112345667889999999999999999999999999999888776654

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.86  E-value=0.00021  Score=71.00  Aligned_cols=130  Identities=15%  Similarity=0.106  Sum_probs=94.1

Q ss_pred             hhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHH--HhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCchh
Q 013910          280 FAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPL--VTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRS  357 (434)
Q Consensus       280 ~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~  357 (434)
                      .+.+++.+.++++.||+|-|+++..+.+++++..+..  ......+...+.-+...+.....++....+.+.-.|+..|+
T Consensus        84 ~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~Ers  163 (466)
T KOG2532|consen   84 WGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNERS  163 (466)
T ss_pred             HHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHHHH
Confidence            5667888889999999999999998888877654433  22222122122222222233345778888999999999999


Q ss_pred             hHHhHHHHhhhHhHhhHHHHHHHHhhh-cchhhHHHHHHHHHHHHHHHHHhcc
Q 013910          358 TGAGVAYAVGRIGGMVCPLVAVGLVTS-CHQTAAILLLEALIVLSVVVILLIP  409 (434)
Q Consensus       358 ~a~gi~~~~~~ig~~~~p~~~~~l~~~-~g~~~~~~~~~~~~~i~~~~~~~~~  409 (434)
                      +..++..+...+|.+++-.+.+.+-+. .|....+++++++.++-.++.+++.
T Consensus       164 ~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~  216 (466)
T KOG2532|consen  164 TFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFY  216 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999887788888877 7777788888877766655554443

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=97.82  E-value=0.00021  Score=70.75  Aligned_cols=137  Identities=20%  Similarity=0.143  Sum_probs=97.7

Q ss_pred             hhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhH
Q 013910          280 FAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTG  359 (434)
Q Consensus       280 ~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~a  359 (434)
                      +..++-+.+-|.++||.|||..+....+.+.+-.+.+.+..  ++... ...........++....+.++.-..+.|..+
T Consensus        73 ~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~--~~~~~-~~~l~g~~~~~~s~~~a~vadis~~~~R~~~  149 (463)
T KOG2816|consen   73 LLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG--YWFFL-LLGLSGGFSAIFSVGFAYVADISSEEERSSS  149 (463)
T ss_pred             HHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH--HHHhh-hcccccchhhhhhhhhhheeeccchhHHHHH
Confidence            34455566778999999999998877665554333332211  23222 1111111223455677889999999999999


Q ss_pred             HhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccCCccccc
Q 013910          360 AGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKELVN  419 (434)
Q Consensus       360 ~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~et~~~~~~e  419 (434)
                      .|+.+..-..+..++|...+.+....+....+.+-++..+++.+...+..||+...+..+
T Consensus       150 ~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~  209 (463)
T KOG2816|consen  150 IGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERS  209 (463)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccccc
Confidence            999999888888899998888777766667777888888899999999999987665543

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=97.80  E-value=0.0002  Score=69.93  Aligned_cols=115  Identities=11%  Similarity=0.046  Sum_probs=80.8

Q ss_pred             hhhhhhHhhhcchHHHHHHHHHHHHHHHHHh------hcccHHHHHHHHHHHHhcCCCch-hhhhhhhhccCC-CcchhH
Q 013910           19 LLEPLYFIFAFSRMSILGGALVTFVAGLLSA------FSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPP-SNRGKW   90 (434)
Q Consensus        19 ~~~~~~~~~~GRr~~l~~~~~~~~i~~~~~~------~~~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~-~~Rg~~   90 (434)
                      ++.+++.||+|+|+.+..+........+...      ..++...+...-.+.+++.|... ....+..+..++ ++||+.
T Consensus       262 ~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~  341 (390)
T TIGR02718       262 GGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTD  341 (390)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHH
Confidence            4556899999999998877765533222211      12344444555555555555543 334455566666 889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Q 013910           91 MVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLL  133 (434)
Q Consensus        91 ~~~~~~~~~~G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~  133 (434)
                      .++.+....+|..+++.+++.+.+..||+..|...++..++..
T Consensus       342 ~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~  384 (390)
T TIGR02718       342 VTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAI  384 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence            9999999999999999999888888899999998877665543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=97.80  E-value=0.00029  Score=70.39  Aligned_cols=123  Identities=15%  Similarity=0.145  Sum_probs=97.9

Q ss_pred             hhhhhhHhhhcch--HHHHHHHHHHHHHHHHHhh--------cccHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcc
Q 013910           19 LLEPLYFIFAFSR--MSILGGALVTFVAGLLSAF--------SPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNR   87 (434)
Q Consensus        19 ~~~~~~~~~~GRr--~~l~~~~~~~~i~~~~~~~--------~~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~R   87 (434)
                      ++-++..||+|-|  ++++..+.++.+..+...+        ..+-..+++.=++.|+..|+.. ..-++++|..|+++.
T Consensus       335 ~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e  414 (477)
T PF11700_consen  335 LLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGRE  414 (477)
T ss_pred             HHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchh
Confidence            5556899999999  8999998888766655554        5677889999999999999875 456789999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHHHHHHHhcCC
Q 013910           88 GKWMVVFSTFWTFGSVSEAALAWIVMPIL-TWRWLLALSAIPAFVLLIFIVFMPE  141 (434)
Q Consensus        88 g~~~~~~~~~~~~G~~l~~~l~~~~~~~~-~Wr~~f~~~~i~~~l~~~~~~~lpE  141 (434)
                      +...+++....-....+||.+...+.+.. +-|+.+....+..++-+++.+++++
T Consensus       415 ~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~~  469 (477)
T PF11700_consen  415 AEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFVDV  469 (477)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccc
Confidence            99999999999999999999877765544 4788777766665555555555554

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=97.74  E-value=0.00014  Score=70.35  Aligned_cols=122  Identities=11%  Similarity=0.101  Sum_probs=98.4

Q ss_pred             hhhhhhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCchh-hhhhhhhccCCCcchhHHHH-HHH
Q 013910           19 LLEPLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHV-FFSWFMEFVPPSNRGKWMVV-FST   96 (434)
Q Consensus        19 ~~~~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~~~-~~~~~~E~~p~~~Rg~~~~~-~~~   96 (434)
                      +..|++.+|+|-|+.++++..+..+=.+++++++|...+.+.+.+.|+..+...+ ..-|+++..|++...+...+ ++.
T Consensus       277 ~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~  356 (412)
T PF01306_consen  277 FFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQF  356 (412)
T ss_dssp             HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTT
T ss_pred             HHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHH
Confidence            5678999999999999999999999899999999999999999999999887754 45699999999998887776 478


Q ss_pred             HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH-HHhcC
Q 013910           97 FWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIF-IVFMP  140 (434)
Q Consensus        97 ~~~~G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~~-~~~lp  140 (434)
                      +..+|..+.+.+++.+-++.|.|-.|++.+...+...++ .+.++
T Consensus       357 ~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~  401 (412)
T PF01306_consen  357 AKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLK  401 (412)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred             HHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeec
Confidence            889999998988888888889998888777665555443 44453

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=97.71  E-value=3.5e-05  Score=73.93  Aligned_cols=120  Identities=14%  Similarity=0.059  Sum_probs=93.3

Q ss_pred             hhHhhhcchHHHHHHHHHHHHHHHHHhhccc-H---H----HHHHHHHHHHhcCCCchhhhhhhhhccCCCcchhHHHHH
Q 013910           23 LYFIFAFSRMSILGGALVTFVAGLLSAFSPN-Y---I----SLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVF   94 (434)
Q Consensus        23 ~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~-~---~----~l~~~R~l~Gig~g~~~~~~~~~~E~~p~~~Rg~~~~~~   94 (434)
                      .++|++|||++.+.+.+++.+..+..++..| .   .    .+-+.-++.-+|.  +.....+-+|.+|++.||..-++.
T Consensus       370 ~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGP--n~ttfivpaE~FParvR~t~hGIs  447 (538)
T KOG0252|consen  370 YFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGP--NATTFIVPAEIFPARVRSTCHGIS  447 (538)
T ss_pred             EEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCC--CceeEEeehhhchHHHhhhhhhHH
Confidence            5899999999999999999999999888877 2   1    2223333333443  333334458999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhc-----ccchHHHHHHHHHHHHHHHHHHHhcCCChh
Q 013910           95 STFWTFGSVSEAALAWIVMP-----ILTWRWLLALSAIPAFVLLIFIVFMPESPR  144 (434)
Q Consensus        95 ~~~~~~G~~l~~~l~~~~~~-----~~~Wr~~f~~~~i~~~l~~~~~~~lpESp~  144 (434)
                      .+..-+|++++...-..+..     ..+-|+.|++.+...++-.+..+++|||.+
T Consensus       448 AA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~  502 (538)
T KOG0252|consen  448 AASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETKG  502 (538)
T ss_pred             HHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEeecccc
Confidence            99999999988876555555     668999999999988888888888999864

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=97.69  E-value=0.00069  Score=68.21  Aligned_cols=128  Identities=17%  Similarity=0.144  Sum_probs=90.2

Q ss_pred             hhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhh-hhhhhhhhcccccCCCchhhHH
Q 013910          282 ELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMG-TFIIANIFAPEIYPTSMRSTGA  360 (434)
Q Consensus       282 ~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~El~P~~~R~~a~  360 (434)
                      ......+.+.+.||+|.|...+.+.+++.+.++...+..+-+...........+..+ .+...-++.+..| .+.|+.|.
T Consensus        94 ~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~  172 (509)
T KOG2504|consen   94 YLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRALAT  172 (509)
T ss_pred             HHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHHHH
Confidence            345566777899999999999999888887766655544332222211111111111 1223334445555 56699999


Q ss_pred             hHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhccc
Q 013910          361 GVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPF  410 (434)
Q Consensus       361 gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  410 (434)
                      |++.+-+.+|.++-|.+..++.+..|...+.++++.+++-..+....+.|
T Consensus       173 Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp  222 (509)
T KOG2504|consen  173 GIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRP  222 (509)
T ss_pred             hhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence            99999999999999998988999888888888888888888888888877

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=97.65  E-value=1.8e-06  Score=86.05  Aligned_cols=105  Identities=18%  Similarity=0.175  Sum_probs=69.6

Q ss_pred             HHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHhhhhhhhhhhcccc
Q 013910          274 NVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQ---SNILLTALLSGARMFSMGTFIIANIFAPEI  350 (434)
Q Consensus       274 ~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~El  350 (434)
                      ......++.++|.+++|+++||+|||+.+..+..+..+..+...+..   +.......-+...+...+.......+..|.
T Consensus        51 ~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~  130 (451)
T PF00083_consen   51 LTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEI  130 (451)
T ss_pred             HHHHHHhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            33455678889999999999999999998887766665544433322   222211111111122223456778899999


Q ss_pred             cCCCchhhHHhHHHHhhhHhHhhHHHHH
Q 013910          351 YPTSMRSTGAGVAYAVGRIGGMVCPLVA  378 (434)
Q Consensus       351 ~P~~~R~~a~gi~~~~~~ig~~~~p~~~  378 (434)
                      .|++.|+...++......+|.+++..+.
T Consensus       131 ~~~~~R~~~~~~~~~~~~~G~~~~~~~~  158 (451)
T PF00083_consen  131 APPKHRGFLSSLFQLFWALGILLASLIG  158 (451)
T ss_pred             cccccccccccccccccccccccccccc
Confidence            9999999988888777767666655543

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=97.61  E-value=0.00063  Score=66.54  Aligned_cols=123  Identities=17%  Similarity=0.246  Sum_probs=89.6

Q ss_pred             hhhhhhHhhhcchHHHHHHHHHHHHHHHHHhhc-ccHHHH----HHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHH
Q 013910           19 LLEPLYFIFAFSRMSILGGALVTFVAGLLSAFS-PNYISL----LILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMV   92 (434)
Q Consensus        19 ~~~~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~-~~~~~l----~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~   92 (434)
                      +..+++..|+|-|+.+.++.+.+.+=..+.+.. ++....    .....++|+..|... +...|+.|.+|++.|++..+
T Consensus       261 ~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~  340 (400)
T PF03825_consen  261 FFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQG  340 (400)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHH
Confidence            456678889999999999999988877777666 454433    334567999988875 45678899999999999999


Q ss_pred             HHHH-HHHHHHHHHHHHHHHHhccc------chHHHHHHHHHHHHHHHH-HHHhcCC
Q 013910           93 VFST-FWTFGSVSEAALAWIVMPIL------TWRWLLALSAIPAFVLLI-FIVFMPE  141 (434)
Q Consensus        93 ~~~~-~~~~G~~l~~~l~~~~~~~~------~Wr~~f~~~~i~~~l~~~-~~~~lpE  141 (434)
                      ++.. ...+|..+++.+++.+.+..      .|...+.+.++..++..+ +..+.+|
T Consensus       341 l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~  397 (400)
T PF03825_consen  341 LYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKP  397 (400)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            9865 56799999999988876544      355566666655554433 3333444

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.58  E-value=0.0024  Score=65.76  Aligned_cols=89  Identities=12%  Similarity=0.184  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhc----c-----------c--
Q 013910           55 ISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMP----I-----------L--  116 (434)
Q Consensus        55 ~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~l~~~~~~----~-----------~--  116 (434)
                      ..++++.++.|+|..... ...+|+=|.+.+++-....++......+|.++|.+++.+...    .           .  
T Consensus       238 llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrW  317 (735)
T KOG3626|consen  238 LLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRW  317 (735)
T ss_pred             HHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcch
Confidence            368899999999987754 557788899999999999999999999999988888777521    1           0  


Q ss_pred             --chHHHHHHHHHHHHHHHHHHHhcCCCh
Q 013910          117 --TWRWLLALSAIPAFVLLIFIVFMPESP  143 (434)
Q Consensus       117 --~Wr~~f~~~~i~~~l~~~~~~~lpESp  143 (434)
                        -|..=|++.+...++..+..+++|...
T Consensus       318 IGAWWlGFLi~g~~~~~~a~p~f~fPk~l  346 (735)
T KOG3626|consen  318 IGAWWLGFLICGALLLFSAVPLFFFPKEL  346 (735)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCcccC
Confidence              277777777777777777777777543

>PRK10429 melibiose:sodium symporter; Provisional

Probab=97.56  E-value=0.0011  Score=66.78  Aligned_cols=93  Identities=15%  Similarity=0.013  Sum_probs=64.9

Q ss_pred             hhhhhHhhhcchHHHHHHHHHHHHHHHHHhh-----cccHHHHHHHHHHHHhcCCCch-hhhhhhhhccC-------CCc
Q 013910           20 LEPLYFIFAFSRMSILGGALVTFVAGLLSAF-----SPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVP-------PSN   86 (434)
Q Consensus        20 ~~~~~~~~~GRr~~l~~~~~~~~i~~~~~~~-----~~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p-------~~~   86 (434)
                      +.|++.||+|||+.+..+..+..++.+...+     ..+...+++.-++.|++.+... ...+++.|..+       +++
T Consensus       285 ~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~  364 (473)
T PRK10429        285 LFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRC  364 (473)
T ss_pred             HHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccc
Confidence            3467999999999999888776655544322     3456667777778888877653 34556667754       334


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHH
Q 013910           87 RGKWMVVFSTFWTFGSVSEAALAWIV  112 (434)
Q Consensus        87 Rg~~~~~~~~~~~~G~~l~~~l~~~~  112 (434)
                      .|...+......-+|..+++.+.+.+
T Consensus       365 ~G~~~s~~~~~~K~~~al~~~i~g~~  390 (473)
T PRK10429        365 ESIAYSVQTMVVKGGSAFAAFFIGVV  390 (473)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56678888888888888887776654

>TIGR00788 fbt folate/biopterin transporter

Probab=97.54  E-value=0.0042  Score=62.33  Aligned_cols=125  Identities=16%  Similarity=0.142  Sum_probs=70.8

Q ss_pred             HHHHHHHHhhc-----hhHHHHHHHHHHH-HHHHHHHhhhh-hHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhh-
Q 013910          287 LTAALLVDRVG-----RKLSMTIMFIFVC-IFLLPLVTLQS-NILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRST-  358 (434)
Q Consensus       287 ~~~~~l~dr~g-----RR~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~-  358 (434)
                      .+.|.++||++     ||+.++.+.++.+ +....+....+ ......+.+...++....-.....+..|..+ +.++. 
T Consensus        78 ~l~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~  156 (468)
T TIGR00788        78 PFAGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAG  156 (468)
T ss_pred             HHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcC
Confidence            34889999996     6666666655552 22222221111 1112112222222222233456778889988 44433 


Q ss_pred             --HHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccC
Q 013910          359 --GAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  413 (434)
Q Consensus       359 --a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~et~  413 (434)
                        ..+..+....+|..+++.+.+.+.+..+....+++.++..++..+...+ .+|.+
T Consensus       157 ~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~-~~E~~  212 (468)
T TIGR00788       157 PSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNL-SKERR  212 (468)
T ss_pred             CCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHh-ccccc
Confidence              3344444455788889988888877666666677777766666444444 46764

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=97.53  E-value=0.012  Score=56.22  Aligned_cols=110  Identities=15%  Similarity=0.064  Sum_probs=71.9

Q ss_pred             HHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHH---hhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccc
Q 013910          274 NVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLV---TLQSNILLTALLSGARMFSMGTFIIANIFAPEI  350 (434)
Q Consensus       274 ~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El  350 (434)
                      ..+....+..++.+..+++.+|+|+|.-++.+..+..+.....+   ...+-......++.........-+....+.+.+
T Consensus        53 iqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~l  132 (422)
T COG0738          53 IQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLL  132 (422)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHh
Confidence            33444456677888899999999999999998887776555432   111111111111111000111123345677888


Q ss_pred             cCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhh
Q 013910          351 YPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVT  383 (434)
Q Consensus       351 ~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~  383 (434)
                      .|++..+.=+.+...++.+|++++|.+..+++.
T Consensus       133 g~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lil  165 (422)
T COG0738         133 GKPESAAFRLNLAQAFNGLGAILGPLLGSSLIL  165 (422)
T ss_pred             CCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            888878888999999999999999999888776

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=97.48  E-value=0.0041  Score=56.32  Aligned_cols=107  Identities=15%  Similarity=0.041  Sum_probs=62.5

Q ss_pred             HHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhh--h----hhHHHHHHHHHHHHHHhhh-hhhhhhh
Q 013910          274 NVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTL--Q----SNILLTALLSGARMFSMGT-FIIANIF  346 (434)
Q Consensus       274 ~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~-~~~~~~~  346 (434)
                      .....+++...| +.+|.+.|+.|.|..+.++.+...+.-..++..  .    .+.+..++........... ....-..
T Consensus        42 l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt  120 (250)
T PF06813_consen   42 LSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVT  120 (250)
T ss_pred             HHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHH
Confidence            334445555554 778999999999999988877666543333221  1    1222222211111111111 1233344


Q ss_pred             cccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHh
Q 013910          347 APEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLV  382 (434)
Q Consensus       347 ~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~  382 (434)
                      ..+-||. .|+++.|+.-+...+++.+-..+...+.
T Consensus       121 ~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f  155 (250)
T PF06813_consen  121 CVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFF  155 (250)
T ss_pred             HHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHc
Confidence            5588985 6999999999998887777666555443

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.47  E-value=0.0028  Score=63.36  Aligned_cols=138  Identities=17%  Similarity=0.180  Sum_probs=99.1

Q ss_pred             HHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCch
Q 013910          277 ITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMR  356 (434)
Q Consensus       277 ~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R  356 (434)
                      +..++.++|.+.++.+.||+.-.+.+..+.+..+++.+.-...++.....++-+...++-.+.++..-.+.+.-|..+.|
T Consensus        89 ~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~  168 (495)
T KOG2533|consen   89 VFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSER  168 (495)
T ss_pred             HHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhh
Confidence            34467788999999999999966666555555544443322233333333333333344455678888899999999999


Q ss_pred             hhHHhHHHHhhhHhHhhHHHHHHHHhh------hcchhhHHHHHHHHHHHHHHHHHhcccccCC
Q 013910          357 STGAGVAYAVGRIGGMVCPLVAVGLVT------SCHQTAAILLLEALIVLSVVVILLIPFETKG  414 (434)
Q Consensus       357 ~~a~gi~~~~~~ig~~~~p~~~~~l~~------~~g~~~~~~~~~~~~~i~~~~~~~~~~et~~  414 (434)
                      ++-+|+-++.+.+|+++++++...+..      ..|..+.+++-++++++.+++++++.|+...
T Consensus       169 g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~  232 (495)
T KOG2533|consen  169 GLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPS  232 (495)
T ss_pred             hhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChh
Confidence            999999999999999999998887532      2234577888899999888888888877654

>PRK09848 glucuronide transporter; Provisional

Probab=97.46  E-value=0.0014  Score=65.44  Aligned_cols=92  Identities=18%  Similarity=0.137  Sum_probs=69.8

Q ss_pred             hhhhHhhhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCC-------cchhH
Q 013910           21 EPLYFIFAFSRMSILGGALVTFVAGLLSAFSP--NYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPS-------NRGKW   90 (434)
Q Consensus        21 ~~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~--~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~-------~Rg~~   90 (434)
                      .+.+.||+|+|+.+..+..+..++.+...+.+  ++..+++.-++.|+|.+... ...+...|..|.+       ++|..
T Consensus       284 ~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~  363 (448)
T PRK09848        284 VPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLT  363 (448)
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHH
Confidence            34689999999999999988887776666644  56677777888898877653 3344556666543       46999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 013910           91 MVVFSTFWTFGSVSEAALAWIV  112 (434)
Q Consensus        91 ~~~~~~~~~~G~~l~~~l~~~~  112 (434)
                      .++++....+|..+++.+...+
T Consensus       364 ~~~~~~~~klg~aig~~i~g~~  385 (448)
T PRK09848        364 YSLFSFTRKCGQAIGGSIPAFI  385 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988876654

>PRK09669 putative symporter YagG; Provisional

Probab=97.44  E-value=0.0015  Score=65.13  Aligned_cols=94  Identities=13%  Similarity=-0.027  Sum_probs=66.3

Q ss_pred             hhhhhHhhhcchHHHHHHHHHHHHHHHHHhh--cccHHHHHHHHHHHHhcCCCch-hhhhhhhhccC-------CCcchh
Q 013910           20 LEPLYFIFAFSRMSILGGALVTFVAGLLSAF--SPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVP-------PSNRGK   89 (434)
Q Consensus        20 ~~~~~~~~~GRr~~l~~~~~~~~i~~~~~~~--~~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p-------~~~Rg~   89 (434)
                      +.+++.||+|+|+.+..+.....+......+  .++...+++.-++.|++.+... ...+.++|..+       ++..|.
T Consensus       283 ~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~  362 (444)
T PRK09669        283 LSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGL  362 (444)
T ss_pred             HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchH
Confidence            4457999999999999887766654433322  3467778888899999887653 34556666654       334567


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Q 013910           90 WMVVFSTFWTFGSVSEAALAWIVM  113 (434)
Q Consensus        90 ~~~~~~~~~~~G~~l~~~l~~~~~  113 (434)
                      ..+.......+|..+++.++..+.
T Consensus       363 ~~s~~~~~~klg~alg~~i~g~ll  386 (444)
T PRK09669        363 VFSTNLFAIKLGLAIGGAVVGWIL  386 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            778888888888888887776653

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.37  E-value=0.0013  Score=54.98  Aligned_cols=93  Identities=15%  Similarity=0.137  Sum_probs=76.2

Q ss_pred             hhhhhhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCchhh-hhhhhhccCCCcchhHHHHHHHH
Q 013910           19 LLEPLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVF-FSWFMEFVPPSNRGKWMVVFSTF   97 (434)
Q Consensus        19 ~~~~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~~~~-~~~~~E~~p~~~Rg~~~~~~~~~   97 (434)
                      +..|...+++|.|++++++.+.+.+.... -+-++...++.+-.+.|+|.+...+. ..|++|...++.|++..+++-..
T Consensus        55 l~~P~iv~~lg~K~sm~lg~~~y~~y~~~-~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i  133 (156)
T PF05978_consen   55 LFAPSIVNKLGPKWSMILGSLGYAIYIAS-FFYPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAI  133 (156)
T ss_pred             HhHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHH
Confidence            77899999999999999999998866543 35667889999999999998876543 46889999999999999887777


Q ss_pred             HHHHHHHHHHHHHHH
Q 013910           98 WTFGSVSEAALAWIV  112 (434)
Q Consensus        98 ~~~G~~l~~~l~~~~  112 (434)
                      ...+.+.|+.+.+++
T Consensus       134 ~~~s~i~G~~~~~~~  148 (156)
T PF05978_consen  134 FQSSLIFGNLFLFFI  148 (156)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            777777777665544

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=97.29  E-value=0.0034  Score=61.80  Aligned_cols=129  Identities=12%  Similarity=0.112  Sum_probs=82.1

Q ss_pred             HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCc
Q 013910          276 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSM  355 (434)
Q Consensus       276 ~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~  355 (434)
                      .+.-.++++..+..+.+.+|+|+-+++.++......=++.+...+++|...-+=..........|...-.|.+...|++.
T Consensus       413 a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l  492 (618)
T KOG3762|consen  413 ALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGL  492 (618)
T ss_pred             hhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc
Confidence            45557788888999999999999999888766666555555555555433222222222333456677789999999999


Q ss_pred             hhhHHhHHHHhh-hHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHH
Q 013910          356 RSTGAGVAYAVG-RIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVV  404 (434)
Q Consensus       356 R~~a~gi~~~~~-~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~  404 (434)
                      |+++.++....- .+|-.++.++.+.+....+....+-++++.|++..+.
T Consensus       493 ~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~  542 (618)
T KOG3762|consen  493 RATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLAL  542 (618)
T ss_pred             hHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHH
Confidence            999999986652 2333344444444444455545555555555444433

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=97.28  E-value=0.001  Score=63.59  Aligned_cols=126  Identities=16%  Similarity=0.160  Sum_probs=98.2

Q ss_pred             CCchhhhhhhhhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCchh-hhhhhhhccCCCcchhHH
Q 013910           13 DMCPKLLLEPLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHV-FFSWFMEFVPPSNRGKWM   91 (434)
Q Consensus        13 ~~~~~~~~~~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~~~-~~~~~~E~~p~~~Rg~~~   91 (434)
                      ..|   ++.|++.||+|-|+++..+.+++++..+...+...-..+.++=.+.|...|+... .-+|+.+..|+++-|+..
T Consensus       303 lg~---ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fF  379 (438)
T COG2270         303 LGA---IIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFF  379 (438)
T ss_pred             HHH---HHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcccccee
Confidence            456   8899999999999999999999999998888887777888888999999998764 567999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHHHHHHHhcCC
Q 013910           92 VVFSTFWTFGSVSEAALAWIVMPI-LTWRWLLALSAIPAFVLLIFIVFMPE  141 (434)
Q Consensus        92 ~~~~~~~~~G~~l~~~l~~~~~~~-~~Wr~~f~~~~i~~~l~~~~~~~lpE  141 (434)
                      ++++...-.++.++|.+...+.+. .+=|.-+....+...+-++....+|+
T Consensus       380 glyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~~  430 (438)
T COG2270         380 GLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVKV  430 (438)
T ss_pred             ehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeecC
Confidence            999999999999999876665442 23555444433333333333444554

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=97.21  E-value=0.0012  Score=64.79  Aligned_cols=116  Identities=15%  Similarity=0.070  Sum_probs=96.8

Q ss_pred             hhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHHH-HHHHHH
Q 013910           23 LYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVF-STFWTF  100 (434)
Q Consensus        23 ~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~-~~~~~~  100 (434)
                      .+..++||-+++.+++....+=-+..+..+|.++-+-..+++|+..+... +..+|++..+||+.|..+.++. .....+
T Consensus       428 klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~Gl  507 (618)
T KOG3762|consen  428 KLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGL  507 (618)
T ss_pred             HHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhccc
Confidence            57789999999999988877766777888999999999999999998875 5567999999999999999876 556778


Q ss_pred             HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHh
Q 013910          101 GSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVF  138 (434)
Q Consensus       101 G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~~~~~  138 (434)
                      |--+|+++++.+....+=|..|.+.++.+++.+..+..
T Consensus       508 G~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~  545 (618)
T KOG3762|consen  508 GKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFIS  545 (618)
T ss_pred             CcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHH
Confidence            88888999888888888888888888777766554443

>PF13347 MFS_2: MFS/sugar transport protein

Probab=97.17  E-value=0.0025  Score=63.15  Aligned_cols=125  Identities=18%  Similarity=0.150  Sum_probs=73.1

Q ss_pred             HHHHHHHH----hhchhHHHH-HHHHHHHHHHHHHHhhhh----hHH----HHHHHHHHHHHHhhhhhhhhhhcccccCC
Q 013910          287 LTAALLVD----RVGRKLSMT-IMFIFVCIFLLPLVTLQS----NIL----LTALLSGARMFSMGTFIIANIFAPEIYPT  353 (434)
Q Consensus       287 ~~~~~l~d----r~gRR~~~~-~~~~~~~~~~~~~~~~~~----~~~----~~~~~~~~~~~~~~~~~~~~~~~~El~P~  353 (434)
                      .+.|.++|    |.|||+..+ .+....++....+....+    ...    ..+.......+.........++.+|+.++
T Consensus        55 p~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~  134 (428)
T PF13347_consen   55 PLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPD  134 (428)
T ss_pred             CcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCcccccc
Confidence            36677889    789887665 455555554444432211    111    11111111111112223456688899985


Q ss_pred             -CchhhHHhHHHHhhhHhHhhHHHHHHHHhhhcc-------hhhHHHHHHHHHHHHHHHHHhcccc
Q 013910          354 -SMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH-------QTAAILLLEALIVLSVVVILLIPFE  411 (434)
Q Consensus       354 -~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g-------~~~~~~~~~~~~~i~~~~~~~~~~e  411 (434)
                       +.|....+....++.+|+.+...+.+.+.+..+       ......+++++..++.++..+..+|
T Consensus       135 ~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke  200 (428)
T PF13347_consen  135 PDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKE  200 (428)
T ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence             689999999988888888766666665554333       2233455666667777777777777

>PRK11462 putative transporter; Provisional

Probab=97.09  E-value=0.028  Score=56.31  Aligned_cols=131  Identities=14%  Similarity=0.100  Sum_probs=70.7

Q ss_pred             hhhhHHHHHHHHHHh----hchhHHHHH-HHHHHHHHHHHHHhhh----hh--HHHHHHHHHHHHHHhhhhhhhhhhccc
Q 013910          281 AELPGLLTAALLVDR----VGRKLSMTI-MFIFVCIFLLPLVTLQ----SN--ILLTALLSGARMFSMGTFIIANIFAPE  349 (434)
Q Consensus       281 ~~~~g~~~~~~l~dr----~gRR~~~~~-~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~E  349 (434)
                      ...+.-.+.|.++||    +|||+..+. +.+..++....+....    ..  .+..........+........+++.+|
T Consensus        57 ~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~  136 (460)
T PRK11462         57 LDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGV  136 (460)
T ss_pred             HHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            334555667899996    588776654 4445554444333211    11  111111111111111222345667888


Q ss_pred             ccC-CCchhhHHhHHHHhhhHhHhhHHHHHHHHhhhcc-------hhhHHHHHHHHHHHHHHHHHhcccc
Q 013910          350 IYP-TSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH-------QTAAILLLEALIVLSVVVILLIPFE  411 (434)
Q Consensus       350 l~P-~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g-------~~~~~~~~~~~~~i~~~~~~~~~~e  411 (434)
                      +.+ .+.|++..+.-...+.+|+.+++.+...+....+       ......+++++.+++.++.+...+|
T Consensus       137 lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE  206 (460)
T PRK11462        137 ITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKE  206 (460)
T ss_pred             hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhccee
Confidence            888 5889999999999999988887776655544332       1122334455545555555544444

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=97.09  E-value=0.0085  Score=54.26  Aligned_cols=121  Identities=18%  Similarity=0.156  Sum_probs=84.3

Q ss_pred             hhhhhhHhhhcchHHHHHHHHHHHHHHHHHhhc-------ccHHHHHHHHHHHHhcCCCc-hhhhhhhhhccCCCcchhH
Q 013910           19 LLEPLYFIFAFSRMSILGGALVTFVAGLLSAFS-------PNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKW   90 (434)
Q Consensus        19 ~~~~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~-------~~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~   90 (434)
                      ++..+..|++|.+.++.++.+...++-.....+       ++++.+.+.-++.|.|.+.. .+...-..+.+| ++||.+
T Consensus        54 ~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~v  132 (250)
T PF06813_consen   54 ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTV  132 (250)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCce
Confidence            344578999999999999999988887655332       35677777777776664432 222222346777 589999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcC
Q 013910           91 MVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMP  140 (434)
Q Consensus        91 ~~~~~~~~~~G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~~~~~lp  140 (434)
                      .++.-....++..+-..+...+-+...-+.+......|.++.++..+++.
T Consensus       133 vgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l~~~~~vr  182 (250)
T PF06813_consen  133 VGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLVAMFFVR  182 (250)
T ss_pred             ehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhhee
Confidence            99999999998887766665555556677777777777776655555543

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=97.08  E-value=0.0032  Score=58.53  Aligned_cols=121  Identities=14%  Similarity=0.215  Sum_probs=85.0

Q ss_pred             hhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCchhhhhhhhhccCCCcchhHHHHHHHHHHHHH
Q 013910           23 LYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGS  102 (434)
Q Consensus        23 ~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~  102 (434)
                      ..+|-.==|+++++-.+..........+.++...+=+.-+.-|...+...+.++|+-+..+|+++.+..+......-.|.
T Consensus        64 lLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tAaEIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~  143 (433)
T KOG3810|consen   64 LLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATAAEIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGK  143 (433)
T ss_pred             HHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHHHHHhhhheeeeecCHHHHHHHHHHhHHHHHHHh
Confidence            36675534677766666666667777888888888888888888777776777888899999999999999988888899


Q ss_pred             HHHHHHHHHHhccc--chHHHHHHHHHHHHHHHHHHHhcCCCh
Q 013910          103 VSEAALAWIVMPIL--TWRWLLALSAIPAFVLLIFIVFMPESP  143 (434)
Q Consensus       103 ~l~~~l~~~~~~~~--~Wr~~f~~~~i~~~l~~~~~~~lpESp  143 (434)
                      ..+..++..+....  +++.+=.+.-....+......++|.-|
T Consensus       144 ~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~  186 (433)
T KOG3810|consen  144 FVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVK  186 (433)
T ss_pred             HHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCc
Confidence            88888887765433  344433343333333334455666554

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=96.99  E-value=0.019  Score=56.57  Aligned_cols=95  Identities=21%  Similarity=0.243  Sum_probs=70.3

Q ss_pred             hhhhhhhHhhhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHhcCCCch-hhhhh------hhhccCCCcc-
Q 013910           18 LLLEPLYFIFAFSRMSILGGALVTFVAGLLSAFSP--NYISLLILRGLAGAGLGSGH-VFFSW------FMEFVPPSNR-   87 (434)
Q Consensus        18 ~~~~~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~--~~~~l~~~R~l~Gig~g~~~-~~~~~------~~E~~p~~~R-   87 (434)
                      ..+.|.+++|+|+|+++.++.+++.++.++.-+.+  +....++..++.++|.+... ...+.      ..|+-..++| 
T Consensus       289 ~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~e  368 (467)
T COG2211         289 LILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRRE  368 (467)
T ss_pred             HHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCch
Confidence            34668899999999999999999999998887765  78889999999998877642 33333      2355444444 


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHH
Q 013910           88 GKWMVVFSTFWTFGSVSEAALAWIV  112 (434)
Q Consensus        88 g~~~~~~~~~~~~G~~l~~~l~~~~  112 (434)
                      |...+......=+|..++..+..+.
T Consensus       369 Gi~~s~~tF~~K~g~ala~~~~g~~  393 (467)
T COG2211         369 GIVYSGMTFFRKLGLALAGFIPGWI  393 (467)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6667777777777777777655443

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=96.81  E-value=0.28  Score=48.96  Aligned_cols=44  Identities=7%  Similarity=-0.151  Sum_probs=38.7

Q ss_pred             hhh-hhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHh
Q 013910          339 TFI-IANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLV  382 (434)
Q Consensus       339 ~~~-~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~  382 (434)
                      ..+ +.|.+.+|+++++.-.+-.++....+++|.++++.+..++.
T Consensus       145 vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       145 VLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344 78999999999999999999999999999999998877655

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=96.59  E-value=0.078  Score=55.22  Aligned_cols=123  Identities=18%  Similarity=0.178  Sum_probs=70.8

Q ss_pred             hHHHHHHHHHHh-hchhHHHHHHHHHHHHHHHHHHhhh------hhHHHHHHHHHHHHHHhhh---hhhhhhhcccccCC
Q 013910          284 PGLLTAALLVDR-VGRKLSMTIMFIFVCIFLLPLVTLQ------SNILLTALLSGARMFSMGT---FIIANIFAPEIYPT  353 (434)
Q Consensus       284 ~g~~~~~~l~dr-~gRR~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~El~P~  353 (434)
                      +..+++++++|+ +||++.+.++.++..+....+....      .......+...+ +...|.   =+.......|.++.
T Consensus        38 l~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLa-Lia~G~GgiKp~vsaf~gdqf~~  116 (654)
T TIGR00926        38 LTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLA-LIALGTGGIKPCVSAFGGDQFEE  116 (654)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHH-HHHhhccccccCchhhhHhhcCc
Confidence            345678889996 6999988877666554333222210      001111111111 111122   23455566677764


Q ss_pred             C---chhhHHhHHHHhhhHhHhhHHHHHHHHhhhc-------chhhHHHHHHHHHHHHHHHHHh
Q 013910          354 S---MRSTGAGVAYAVGRIGGMVCPLVAVGLVTSC-------HQTAAILLLEALIVLSVVVILL  407 (434)
Q Consensus       354 ~---~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~-------g~~~~~~~~~~~~~i~~~~~~~  407 (434)
                      +   .|...+.+.++.+++|+++++.+.+++.+..       +....+.+.+++++++.++...
T Consensus       117 ~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~  180 (654)
T TIGR00926       117 RQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMA  180 (654)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHH
Confidence            3   4788899999999999999999888776432       2334555555555655555443

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=96.58  E-value=0.19  Score=47.66  Aligned_cols=133  Identities=19%  Similarity=0.085  Sum_probs=67.5

Q ss_pred             hhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhh--hh---hcccccCCCch
Q 013910          282 ELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIA--NI---FAPEIYPTSMR  356 (434)
Q Consensus       282 ~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~El~P~~~R  356 (434)
                      ..+-..+.|.++||+|||+..+..+++-.+..+.--..+...+...-+..+. .....++..  |.   ....=+|.+-.
T Consensus        82 s~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~~~~~~L~~GRvlgGi-aTSLLfS~FEsW~V~Eh~~~g~~~~~L  160 (354)
T PF05631_consen   82 SAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHSSNYPVLLLGRVLGGI-ATSLLFSAFESWMVHEHNKRGFPQEWL  160 (354)
T ss_pred             HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCChHHH
Confidence            3444556678999999999877665555544432211111111111111111 111111111  11   12234555555


Q ss_pred             hhHHhHHHHh-hhHhHhhHHHHHHHHhhhcc--hhhHHHHHHHHHHHHHHHHHhcccccCCc
Q 013910          357 STGAGVAYAV-GRIGGMVCPLVAVGLVTSCH--QTAAILLLEALIVLSVVVILLIPFETKGK  415 (434)
Q Consensus       357 ~~a~gi~~~~-~~ig~~~~p~~~~~l~~~~g--~~~~~~~~~~~~~i~~~~~~~~~~et~~~  415 (434)
                      +.-++..... +.+.++.+..+...+.+..+  .-.|+..-..+..++.+++...-+|..|.
T Consensus       161 ~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~  222 (354)
T PF05631_consen  161 SDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGD  222 (354)
T ss_pred             HHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCC
Confidence            5555544422 33455666666655555443  35677776777777777777666676554

>TIGR01272 gluP glucose/galactose transporter

Probab=96.48  E-value=0.02  Score=54.10  Aligned_cols=106  Identities=10%  Similarity=0.044  Sum_probs=70.3

Q ss_pred             hhhhhhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHHHHHH
Q 013910           19 LLEPLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTF   97 (434)
Q Consensus        19 ~~~~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~   97 (434)
                      ++.....||+|+|+.+.++..+..++.++....++...+ .+=++.|++.+... ...+...+..|++ .+...++.. .
T Consensus       196 ~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~-~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~~-~  272 (310)
T TIGR01272       196 FIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVAM-WFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGILC-L  272 (310)
T ss_pred             HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHHH-H
Confidence            344468999999999888887777766555555543332 34446777776653 4455555666654 455666654 4


Q ss_pred             HHHHHHHHHHHHHHHhcccchHHHHHHHHH
Q 013910           98 WTFGSVSEAALAWIVMPILTWRWLLALSAI  127 (434)
Q Consensus        98 ~~~G~~l~~~l~~~~~~~~~Wr~~f~~~~i  127 (434)
                      ..+|..+.|.+.+.+.+..+-+..|++..+
T Consensus       273 ~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~  302 (310)
T TIGR01272       273 AIVGGAIVPLLQGSLADCLGIQLAFALPVP  302 (310)
T ss_pred             HHhcchHHHHHHHHHHHhccchHHHHHHHH
Confidence            557888888888887777788888775433

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=96.39  E-value=1.2  Score=44.21  Aligned_cols=44  Identities=20%  Similarity=0.232  Sum_probs=31.3

Q ss_pred             hhhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhh
Q 013910          340 FIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVT  383 (434)
Q Consensus       340 ~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~  383 (434)
                      +....++-+.+..+.+-||-+.+-|.++++||---..+.-+++|
T Consensus       423 FVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD  466 (544)
T PF13000_consen  423 FVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVD  466 (544)
T ss_pred             HHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhh
Confidence            34455666788889999999999999999988543333344443

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=96.29  E-value=0.3  Score=44.25  Aligned_cols=89  Identities=22%  Similarity=0.199  Sum_probs=60.8

Q ss_pred             hhhhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCch-hhhhh-hhhccCCCcchhH----HHHH
Q 013910           21 EPLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSW-FMEFVPPSNRGKW----MVVF   94 (434)
Q Consensus        21 ~~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~~-~~~~~-~~E~~p~~~Rg~~----~~~~   94 (434)
                      +..+.|+-|||+.-+..++.++++++ +-.++.|-.++++|.+-|++...-. ..-+| ++|.-  ++||.-    ...+
T Consensus        92 vgSLaDkqGRKracvtycitYiLsCi-TKhSpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHn--ekr~FeqqWls~TF  168 (454)
T KOG4332|consen   92 VGSLADKQGRKRACVTYCITYILSCI-TKHSPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHN--EKRGFEQQWLSVTF  168 (454)
T ss_pred             HHHHHhhhccccceeeehHHHHHHHH-hhcCCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhh--hccCChHhhhhHHH
Confidence            34589999999998888887777664 6778999999999999999876543 33455 45765  344433    3334


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 013910           95 STFWTFGSVSEAALAWIV  112 (434)
Q Consensus        95 ~~~~~~G~~l~~~l~~~~  112 (434)
                      .=+..+|.-+.+.+++..
T Consensus       169 skA~ffgNglvAiiaGlf  186 (454)
T KOG4332|consen  169 SKAVFFGNGLVAIIAGLF  186 (454)
T ss_pred             HHHHHhhccHHHHHHHHH
Confidence            444555665555555544

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=96.26  E-value=0.044  Score=54.38  Aligned_cols=129  Identities=24%  Similarity=0.225  Sum_probs=77.8

Q ss_pred             HHHHHHHHhh-----chhHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCC--c
Q 013910          287 LTAALLVDRV-----GRKLSMTIMFIFVCIFLLPLVTLQ----SNILLTALLSGARMFSMGTFIIANIFAPEIYPTS--M  355 (434)
Q Consensus       287 ~~~~~l~dr~-----gRR~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~--~  355 (434)
                      .+.|.++|-+     .||..++++.+++.+....+....    +......+.+...+.....-.+......|....+  .
T Consensus        42 p~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~  121 (433)
T PF03092_consen   42 PLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES  121 (433)
T ss_pred             hhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch
Confidence            4567899976     455666667666654444333211    1122222333333322233344566666766332  2


Q ss_pred             hhhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccCCc
Q 013910          356 RSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGK  415 (434)
Q Consensus       356 R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~et~~~  415 (434)
                      |+.-.+.++.+..+|++++..+.+.+.+..+....+.+.+.+..+..+..+++.+|.+.+
T Consensus       122 ~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e~~~~  181 (433)
T PF03092_consen  122 RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEERKVR  181 (433)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhhcccc
Confidence            677778888888889999888888887766655566677777777777777887774333

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=96.15  E-value=0.043  Score=53.27  Aligned_cols=91  Identities=19%  Similarity=0.128  Sum_probs=60.1

Q ss_pred             hhhhh---hHh----hhcchHHHHHHHHHHH-HHHHHHhhcccHHH------------HHHHHHHHHhcC---CCch---
Q 013910           19 LLEPL---YFI----FAFSRMSILGGALVTF-VAGLLSAFSPNYIS------------LLILRGLAGAGL---GSGH---   72 (434)
Q Consensus        19 ~~~~~---~~~----~~GRr~~l~~~~~~~~-i~~~~~~~~~~~~~------------l~~~R~l~Gig~---g~~~---   72 (434)
                      ++||.   .+|    ||||||.++....+.. ++.++..++.++..            .-+.-++.|+..   +.+.   
T Consensus        82 ~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qg  161 (498)
T KOG0637|consen   82 LVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQG  161 (498)
T ss_pred             eecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhh
Confidence            56774   666    8999999988777665 44566677765543            334445555432   2221   


Q ss_pred             hhhhhhhhccCCCcchh-HHHHHHHHHHHHHHHHHHHH
Q 013910           73 VFFSWFMEFVPPSNRGK-WMVVFSTFWTFGSVSEAALA  109 (434)
Q Consensus        73 ~~~~~~~E~~p~~~Rg~-~~~~~~~~~~~G~~l~~~l~  109 (434)
                      ..-+++.+.+..++|.+ +.+.+..+..+|..+|..++
T Consensus       162 p~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g  199 (498)
T KOG0637|consen  162 PCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALG  199 (498)
T ss_pred             hHHHHHHHhccChhhhhccchhHHHHHHhcceeeeecc
Confidence            23357777777766666 88899999999988776654

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=96.12  E-value=1.6  Score=43.09  Aligned_cols=100  Identities=18%  Similarity=0.136  Sum_probs=62.1

Q ss_pred             HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHH----Hhhhhh--HHHHHHHHHHHHHH-hhhh--h-hhhh
Q 013910          276 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPL----VTLQSN--ILLTALLSGARMFS-MGTF--I-IANI  345 (434)
Q Consensus       276 ~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~----~~~~~~--~~~~~~~~~~~~~~-~~~~--~-~~~~  345 (434)
                      -+..+.++.|+++..++.+|+|..+.-+.+......++...    ....++  ......++.+.... .|.+  . ...-
T Consensus       300 ~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~q  379 (432)
T PF06963_consen  300 GLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQ  379 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            45567788999999999999998887766655544333221    112211  22222222222111 1222  1 3455


Q ss_pred             hcccccCCCchhhHHhHHHHhhhHhHhhHH
Q 013910          346 FAPEIYPTSMRSTGAGVAYAVGRIGGMVCP  375 (434)
Q Consensus       346 ~~~El~P~~~R~~a~gi~~~~~~ig~~~~p  375 (434)
                      +..|..|.+.|++-.|+=++..++.-.+.-
T Consensus       380 i~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~  409 (432)
T PF06963_consen  380 IMQENVPESERGAVSGVQNSLQSLFELLSF  409 (432)
T ss_pred             hhcccCCHHHhhHHHHHHHHHHHHHHHHHH
Confidence            778999999999999999999888766543

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=96.06  E-value=0.11  Score=50.52  Aligned_cols=108  Identities=17%  Similarity=0.197  Sum_probs=64.5

Q ss_pred             HHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHH-HHH-h---hhhhHHHHHHHHHHHHHH-hhhhh--hhhhhc
Q 013910          276 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLL-PLV-T---LQSNILLTALLSGARMFS-MGTFI--IANIFA  347 (434)
Q Consensus       276 ~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~-~~~-~---~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~  347 (434)
                      .+..+..++-.+.+.|+.||.|-|....++....++... -+. .   .++....-+...+..... ..++.  +..-+.
T Consensus        86 mIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA  165 (480)
T KOG2563|consen   86 MIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIA  165 (480)
T ss_pred             HHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHH
Confidence            344566677788899999999999998887766655322 111 1   111112111222221111 11111  122345


Q ss_pred             ccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhh
Q 013910          348 PEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVT  383 (434)
Q Consensus       348 ~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~  383 (434)
                      .--||+..|++|..++.+.+.+|..++..+-+.+..
T Consensus       166 ~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~  201 (480)
T KOG2563|consen  166 AVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVP  201 (480)
T ss_pred             HhhCCcchhhhhhhHHHhcchHHHHHHhhccceecC
Confidence            567899999999999999988888777665554443

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=95.73  E-value=0.06  Score=52.24  Aligned_cols=105  Identities=20%  Similarity=0.220  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHHHHHHH---hhcccH------HHHHHHHHHHHhcCCCch-hhhhhhhhccCCCc---chhHHHHHHHHH
Q 013910           32 MSILGGALVTFVAGLLS---AFSPNY------ISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSN---RGKWMVVFSTFW   98 (434)
Q Consensus        32 ~~l~~~~~~~~i~~~~~---~~~~~~------~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~---Rg~~~~~~~~~~   98 (434)
                      ++++++.++..++.++.   +..++.      ..++++-++.++|.|+.- ...+...|-+++++   |.....++..+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            56778888888887763   222333      579999999999998874 45567778777763   455566788899


Q ss_pred             HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHH
Q 013910           99 TFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFI  136 (434)
Q Consensus        99 ~~G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~~~  136 (434)
                      ++|..++..+...+-++.+|.+.|.+.++..++.+...
T Consensus        82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f  119 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVF  119 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHH
Confidence            99999988887777788999999999887766654433

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=95.62  E-value=0.33  Score=48.24  Aligned_cols=137  Identities=18%  Similarity=0.216  Sum_probs=76.1

Q ss_pred             HHHhhhhhHHHHHHHHHHhhch-hHHHHHHHHHHHHHHHHH-Hh-hhhhHHHHHHHHHHHHH-H--hhhhhhhhhhcccc
Q 013910          277 ITSFAELPGLLTAALLVDRVGR-KLSMTIMFIFVCIFLLPL-VT-LQSNILLTALLSGARMF-S--MGTFIIANIFAPEI  350 (434)
Q Consensus       277 ~~~~~~~~g~~~~~~l~dr~gR-R~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~El  350 (434)
                      ..+++..+++++.++...|.+. |+.++++.+++.+..+.. .. ...+.... +.+.+.++ .  .+.....-.|.+..
T Consensus        79 a~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y-~mL~~R~l~Gvg~~n~a~lR~Y~a~~  157 (488)
T KOG2325|consen   79 ASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKY-LMLVARILTGVGVGNFAVLRAYIADA  157 (488)
T ss_pred             HHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHH-HHHHHHHHcCcCcccHHHHHHHHHhc
Confidence            4557788888899999999884 555555555555433222 21 11111111 22223222 1  23345566777775


Q ss_pred             cCCCchhhHHhHHHHhhhHhHhhHHHHHHH---Hhhh---------cc-hhhHHHHHHHHHHHHHHHHHhcccccCC
Q 013910          351 YPTSMRSTGAGVAYAVGRIGGMVCPLVAVG---LVTS---------CH-QTAAILLLEALIVLSVVVILLIPFETKG  414 (434)
Q Consensus       351 ~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~---l~~~---------~g-~~~~~~~~~~~~~i~~~~~~~~~~et~~  414 (434)
                      --.+.|.+|++.....--+|.+++|.+...   +.+.         .+ .+.+.++++...++..+++.++..|...
T Consensus       158 s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~  234 (488)
T KOG2325|consen  158 STVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYR  234 (488)
T ss_pred             cCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeeccc
Confidence            556666666666655434444555544332   2211         11 2466788888888888888877766543

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=95.45  E-value=0.2  Score=52.27  Aligned_cols=109  Identities=17%  Similarity=0.115  Sum_probs=73.0

Q ss_pred             hhcchHHHHHHHHHHHHHHHHHhhccc--------HHHHHHHHHHHHhcCCCc-hhhhhhhhhccCCCc---chhHHHHH
Q 013910           27 FAFSRMSILGGALVTFVAGLLSAFSPN--------YISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSN---RGKWMVVF   94 (434)
Q Consensus        27 ~~GRr~~l~~~~~~~~i~~~~~~~~~~--------~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~---Rg~~~~~~   94 (434)
                      ++||++++.++.++..++..+.++...        ...++++=.+..+|.|+. +...+...|-.++++   |-....++
T Consensus        50 ~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~f  129 (654)
T TIGR00926        50 WLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFF  129 (654)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHH
Confidence            899999999999999888877665421        123555666666677765 334445566665543   44556666


Q ss_pred             HHHHHHHHHHHHHHHHHHhc-------ccchHHHHHHHHHHHHHHHHH
Q 013910           95 STFWTFGSVSEAALAWIVMP-------ILTWRWLLALSAIPAFVLLIF  135 (434)
Q Consensus        95 ~~~~~~G~~l~~~l~~~~~~-------~~~Wr~~f~~~~i~~~l~~~~  135 (434)
                      ..+.++|++++..+...+..       ..+|...|.+.++..++..++
T Consensus       130 Y~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lv  177 (654)
T TIGR00926       130 YFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIV  177 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHH
Confidence            77777888877776655542       246999999988776665443

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=95.15  E-value=1.1  Score=40.42  Aligned_cols=55  Identities=15%  Similarity=0.291  Sum_probs=36.7

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHHH-----hcccchHHHHHHHHHHHHHHHHHHHh
Q 013910           84 PSNRGKWMVVFSTFWTFGSVSEAALAWIV-----MPILTWRWLLALSAIPAFVLLIFIVF  138 (434)
Q Consensus        84 ~~~Rg~~~~~~~~~~~~G~~l~~~l~~~~-----~~~~~Wr~~f~~~~i~~~l~~~~~~~  138 (434)
                      .|+|+..+.+...++++|.++....-..-     ....+||+++.+.++..++.++.+..
T Consensus         1 ~k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~i   60 (267)
T PF07672_consen    1 QKKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYII   60 (267)
T ss_pred             CCccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36788888888889999988765432111     11346999999887776665554443

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=94.91  E-value=4.6  Score=40.40  Aligned_cols=39  Identities=3%  Similarity=0.003  Sum_probs=33.4

Q ss_pred             hhhhhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 013910           75 FSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVM  113 (434)
Q Consensus        75 ~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~l~~~~~  113 (434)
                      ..+.+|.++.++=.+..+++..+.++|.++++.+...+.
T Consensus       151 W~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       151 WGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345689999999999999999999999999998776654

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=94.89  E-value=0.93  Score=37.87  Aligned_cols=104  Identities=14%  Similarity=0.068  Sum_probs=61.3

Q ss_pred             HHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCC
Q 013910          275 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTS  354 (434)
Q Consensus       275 ~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~  354 (434)
                      ..+......+.+++++.+.+++|.|+.++++.+.-.+................-.+.+ +.....+.....+..+..+.+
T Consensus        43 lai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~~~~~~l~~~s~l~G-~~~a~lW~aqg~ylt~~s~~~  121 (156)
T PF05978_consen   43 LAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFYPNSYTLYPASALLG-FGAALLWTAQGTYLTSYSTEE  121 (156)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhHHhhHhhhHHHHHcCCHH
Confidence            3333444556677888999999999999988776665554433222111111111111 111122344445667777888


Q ss_pred             chhhHHhHHHHhhhHhHhhHHHHHH
Q 013910          355 MRSTGAGVAYAVGRIGGMVCPLVAV  379 (434)
Q Consensus       355 ~R~~a~gi~~~~~~ig~~~~p~~~~  379 (434)
                      .|++-.|+...+...+.+.+..+..
T Consensus       122 ~~~~~~~ifw~i~~~s~i~G~~~~~  146 (156)
T PF05978_consen  122 TIGRNTGIFWAIFQSSLIFGNLFLF  146 (156)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888777776666665443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=94.63  E-value=0.49  Score=45.63  Aligned_cols=47  Identities=13%  Similarity=0.125  Sum_probs=39.5

Q ss_pred             hhhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhhhcc
Q 013910          340 FIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH  386 (434)
Q Consensus       340 ~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g  386 (434)
                      .+...+..+|..|++.|+++.++.+.+--+|-+++..+.+.+.+...
T Consensus       107 ~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s  153 (403)
T PF03209_consen  107 GTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFS  153 (403)
T ss_pred             HHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccC
Confidence            34567788999999999999999999988888888888887776543

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=94.35  E-value=5.2  Score=38.50  Aligned_cols=44  Identities=20%  Similarity=0.232  Sum_probs=33.4

Q ss_pred             hhhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhh
Q 013910          340 FIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVT  383 (434)
Q Consensus       340 ~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~  383 (434)
                      +....+.-+.+.++..-+|-+.+-|..+++|+---..+...+.|
T Consensus       387 fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D  430 (510)
T KOG3574|consen  387 FVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLAD  430 (510)
T ss_pred             HHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcc
Confidence            34455677899999999999999999999987554444555554

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=93.89  E-value=0.31  Score=44.61  Aligned_cols=105  Identities=10%  Similarity=-0.074  Sum_probs=68.8

Q ss_pred             hhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCchh-hhhhhhhccCCCcchhHHHHHHHHHHHH
Q 013910           23 LYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHV-FFSWFMEFVPPSNRGKWMVVFSTFWTFG  101 (434)
Q Consensus        23 ~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~~~-~~~~~~E~~p~~~Rg~~~~~~~~~~~~G  101 (434)
                      ..+|++||+...+.+..+..+.+-. ...-++..-+++-.+.|++...-.+ ..+.++-..|.++-|++.++.+...++|
T Consensus       322 ~i~Dk~G~n~~wv~~a~~~tl~~H~-~l~Ft~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLg  400 (459)
T KOG4686|consen  322 AISDKYGFNLWWVASACILTLLGHS-GLFFTFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLG  400 (459)
T ss_pred             HhHhhhcceehhHHHHHHHHHHHhh-hHHhhhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhh
Confidence            3689999887776665555444321 1112233345556667766433221 2334567789999999999999999999


Q ss_pred             HHHHHHHHHHHhcccc---hHHHHHHHHHH
Q 013910          102 SVSEAALAWIVMPILT---WRWLLALSAIP  128 (434)
Q Consensus       102 ~~l~~~l~~~~~~~~~---Wr~~f~~~~i~  128 (434)
                      ..+.+.++..+.+..|   |--.|++....
T Consensus       401 la~i~Iiag~i~d~~g~y~~le~ffl~~~~  430 (459)
T KOG4686|consen  401 LAFIPIIAGFIADGDGSYDNLEAFFLIIGL  430 (459)
T ss_pred             hhHHhhhhheeecCCCchhhHHHHHHHHHH
Confidence            9999999998876544   55566655443

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=93.44  E-value=9.5  Score=38.40  Aligned_cols=42  Identities=14%  Similarity=-0.056  Sum_probs=37.1

Q ss_pred             hhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhh
Q 013910          342 IANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVT  383 (434)
Q Consensus       342 ~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~  383 (434)
                      +.|.+.+|+++.+...+-.++....+++|.++++.+..++..
T Consensus       164 LFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  164 LFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            579999999999999999999999999999998877766554

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=93.14  E-value=1.2  Score=40.61  Aligned_cols=105  Identities=25%  Similarity=0.250  Sum_probs=58.7

Q ss_pred             HhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHHhhhhhhhhhhcccccCC-Cc
Q 013910          279 SFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQS--NILLTALLSGARMFSMGTFIIANIFAPEIYPT-SM  355 (434)
Q Consensus       279 ~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~-~~  355 (434)
                      .+....+....|.+.||.|||+.+..+........+.......  ............+......+....+.+|.+|. +.
T Consensus        49 ~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  128 (338)
T COG0477          49 FLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATE  128 (338)
T ss_pred             HHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhH
Confidence            3444556688999999999997776655432221111111111  11111111111112223455677888899998 66


Q ss_pred             hhhHHhHHHH-hhhHhHhhHHHHHHHHhh
Q 013910          356 RSTGAGVAYA-VGRIGGMVCPLVAVGLVT  383 (434)
Q Consensus       356 R~~a~gi~~~-~~~ig~~~~p~~~~~l~~  383 (434)
                      |+...+.... ...++..++|.+.+.+..
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (338)
T COG0477         129 RGLAVGLVTLGAGALGLALGPLLAGLLLG  157 (338)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888777 456667777755554443

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=90.23  E-value=4  Score=38.92  Aligned_cols=117  Identities=18%  Similarity=0.159  Sum_probs=71.2

Q ss_pred             hhhhhhhHhh-hcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCchhh-hhhhh-hccCCCcchhHHHHH
Q 013910           18 LLLEPLYFIF-AFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVF-FSWFM-EFVPPSNRGKWMVVF   94 (434)
Q Consensus        18 ~~~~~~~~~~-~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~~~~-~~~~~-E~~p~~~Rg~~~~~~   94 (434)
                      -++.|+..+| --||+........+.++.+...+.+.-.-+.- -++.|+|.|..... ...+. -...+++-+...++.
T Consensus       260 ~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgma  338 (395)
T COG2807         260 ALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMA  338 (395)
T ss_pred             HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHh
Confidence            4788988885 44566666666666666666666664333333 38999998886543 33333 334445556666666


Q ss_pred             HHHHHHHHHHHHHHHHHHhc-ccchHHHHHHHHHHHHHHHHH
Q 013910           95 STFWTFGSVSEAALAWIVMP-ILTWRWLLALSAIPAFVLLIF  135 (434)
Q Consensus        95 ~~~~~~G~~l~~~l~~~~~~-~~~Wr~~f~~~~i~~~l~~~~  135 (434)
                      |...++=...+|.+.+++-+ ..+|+..........++..+.
T Consensus       339 Qg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~  380 (395)
T COG2807         339 QGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIF  380 (395)
T ss_pred             hhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence            65444444455555555533 457999888776666655443

>PF12832 MFS_1_like: MFS_1 like family

Probab=88.85  E-value=4.9  Score=28.99  Aligned_cols=37  Identities=14%  Similarity=0.153  Sum_probs=28.0

Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHH
Q 013910          271 VYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFI  307 (434)
Q Consensus       271 ~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~  307 (434)
                      ......+.-+..+++..+.|.++||.+|++.......
T Consensus        37 iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~   73 (77)
T PF12832_consen   37 IGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSL   73 (77)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHH
Confidence            3444445557788899999999999999987766543

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=88.67  E-value=26  Score=34.39  Aligned_cols=123  Identities=15%  Similarity=0.127  Sum_probs=59.9

Q ss_pred             HHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHhhhhhhhhhhcccccCCCchhhHHhHHHH
Q 013910          287 LTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTAL-LSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYA  365 (434)
Q Consensus       287 ~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~El~P~~~R~~a~gi~~~  365 (434)
                      +....++|.+|-|+.++.+.+...+.-..+.+..+....-.. ++.+.  ..+.-...+.+.=-..|++.-.++.+.+.+
T Consensus        59 ~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~--~~a~evay~sYiys~v~~~~yq~vts~~ra  136 (412)
T PF01770_consen   59 LPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGL--ATAAEVAYYSYIYSVVDKEHYQKVTSYTRA  136 (412)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHH--HHHHHHHHHHHheeecCHHHHHHHHHHHHH
Confidence            456689999999999988765544433323332221111111 11110  112222233444445577776777777777


Q ss_pred             hhhHhHhhHHHHHHHHhhhcc-hhhHH-HHHHHHHHHHHHHHHhcccc
Q 013910          366 VGRIGGMVCPLVAVGLVTSCH-QTAAI-LLLEALIVLSVVVILLIPFE  411 (434)
Q Consensus       366 ~~~ig~~~~p~~~~~l~~~~g-~~~~~-~~~~~~~~i~~~~~~~~~~e  411 (434)
                      ..-+|.+++..+.-.++...+ ++... .+-.+...++.++.+++|+-
T Consensus       137 a~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~  184 (412)
T PF01770_consen  137 ATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMP  184 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            665555555544333333222 22222 23234445566666666543

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=84.70  E-value=4  Score=39.73  Aligned_cols=64  Identities=23%  Similarity=0.211  Sum_probs=52.5

Q ss_pred             hhcccHHHHHHHHHHHHhcCCCchhh-hhhhhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 013910           49 AFSPNYISLLILRGLAGAGLGSGHVF-FSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIV  112 (434)
Q Consensus        49 ~~~~~~~~l~~~R~l~Gig~g~~~~~-~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~l~~~~  112 (434)
                      -+.+|.+..++.-+..|+--|..++. ...+.|-.|+++|...++....+-+.|.++++.++..+
T Consensus       330 ~fipsi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  330 RFIPSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            34678888888999999877776654 44567888999999999999999999999998887654

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=84.12  E-value=55  Score=33.79  Aligned_cols=125  Identities=14%  Similarity=0.178  Sum_probs=76.0

Q ss_pred             hhHh-hhcchHHHHHHHHHHHHHHHHHhhccc-------------------------HHHHHHHHHHHHhcCCCc-hhhh
Q 013910           23 LYFI-FAFSRMSILGGALVTFVAGLLSAFSPN-------------------------YISLLILRGLAGAGLGSG-HVFF   75 (434)
Q Consensus        23 ~~~~-~~GRr~~l~~~~~~~~i~~~~~~~~~~-------------------------~~~l~~~R~l~Gig~g~~-~~~~   75 (434)
                      +..| ..||-+++.++.++..++..+...+..                         ...++.+.-+..+|.|+- +...
T Consensus        95 ~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~  174 (571)
T KOG1237|consen   95 FLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLL  174 (571)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcch
Confidence            4555 678999999999888877543322110                         124666666666777764 2333


Q ss_pred             hhhhhccC----CCcch--hHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcCCChhHHhhc
Q 013910           76 SWFMEFVP----PSNRG--KWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTK  149 (434)
Q Consensus        76 ~~~~E~~p----~~~Rg--~~~~~~~~~~~~G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~~~~~lpESp~~l~~~  149 (434)
                      .+-+|-.+    ++.++  ....++....+.|.+++..+.-..-++.+|.+-|.+..+..++.++  .+++-+|.|...+
T Consensus       175 ~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~--iF~~g~~~y~~~~  252 (571)
T KOG1237|consen  175 AFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAIL--IFLPGFPFYRYKK  252 (571)
T ss_pred             hhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHH--HHHcCceeEEeeC
Confidence            34344444    44444  4567788888888887766544444678999999887665554333  3445555555444

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=81.73  E-value=8.6  Score=37.17  Aligned_cols=68  Identities=15%  Similarity=0.086  Sum_probs=49.3

Q ss_pred             hhhhhhcccccCCC---chhhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhc
Q 013910          341 IIANIFAPEIYPTS---MRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLI  408 (434)
Q Consensus       341 ~~~~~~~~El~P~~---~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~  408 (434)
                      +....+.+|.++++   .|..++...+...++|+.+++...+++.+..+....+.+.++.++++.+..+.-
T Consensus        52 ~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~  122 (372)
T PF00854_consen   52 PNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSG  122 (372)
T ss_dssp             HHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred             ccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhC
Confidence            44566777888775   467788888999999999999888888777666667777666666665554443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=80.44  E-value=65  Score=32.04  Aligned_cols=41  Identities=17%  Similarity=0.130  Sum_probs=25.5

Q ss_pred             HHhhh-hhhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHH
Q 013910          335 FSMGT-FIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCP  375 (434)
Q Consensus       335 ~~~~~-~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p  375 (434)
                      +..|. .+....+.++..+++.|-.|..+...+-.+|-.++.
T Consensus       384 ltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs  425 (437)
T TIGR00939       384 FSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGA  425 (437)
T ss_pred             HhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33443 345666778888888887776666665544444433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	434
4gby_A	491	The Structure Of The Mfs (Major Facilitator Superfa		3e-05

>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 118 WRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKI 162
           WR++ A   IPA + L+ +  +PESPR+L ++G+   A  IL KI
Sbjct: 199 WRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKI 243
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	434
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	6e-09

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 57.0 bits (138), Expect = 6e-09
 Identities = 61/397 (15%), Positives = 116/397 (29%), Gaps = 82/397 (20%)

Query: 33  SILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-----VFFSWFMEFVPPSNR 87
            ++  A V    G +   + +   + +L  L G   G G          W+        R
Sbjct: 98  GLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWW----SQKER 153

Query: 88  GKWMVVFSTFWTFGSVSEAALAWIVMPILT-WRWLLALSAIPAFVLLIFI-VFMPESPRY 145
           G  + V++     G      L  + M     W   L + A  A ++ +F    M ++P+ 
Sbjct: 154 GGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ- 212

Query: 146 LCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTV 205
                                   LP      +   D   E +  E T            
Sbjct: 213 ---------------------SCGLPPIEEYKNDYPDDYNEKAEQELTA----------- 240

Query: 206 RKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYY--------GIVLLASELSGSQSKCS 257
                     +   +       LW +   N FVY             L      +  K S
Sbjct: 241 ---KQIFMQYVLPNKL------LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSS 291

Query: 258 SSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRV-GRKLSMTIMF----IFVCIF 312
            +  L E               +A +PG L    + D+V       T +F    + +   
Sbjct: 292 WAYFLYE---------------YAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATI 336

Query: 313 LLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGM 372
           +  +    +  +    +        G  ++  + A E+ P     T AG     G +GG 
Sbjct: 337 VYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGS 396

Query: 373 VC-PLVAVGLVTSCHQTAAILLLEALIVLSVVVILLI 408
           V    +    V         +++    +L+V++++++
Sbjct: 397 VAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	434
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	100.0
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.96
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.94
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.91
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.86
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.85
2xut_A	524	Proton/peptide symporter family protein; transport	99.83
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.26
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.15
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.15
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.03
2xut_A	524	Proton/peptide symporter family protein; transport	98.95
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.64
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.61

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=100.00  E-value=5.8e-42  Score=343.42  Aligned_cols=368  Identities=21%  Similarity=0.262  Sum_probs=257.1

Q ss_pred             hhhhHhhhcchHHHHHHHHHHHHHHHHHh------------------hcccHHHHHHHHHHHHhcCCCch-hhhhhhhhc
Q 013910           21 EPLYFIFAFSRMSILGGALVTFVAGLLSA------------------FSPNYISLLILRGLAGAGLGSGH-VFFSWFMEF   81 (434)
Q Consensus        21 ~~~~~~~~GRr~~l~~~~~~~~i~~~~~~------------------~~~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~   81 (434)
                      ...+.||+|||++++++.+++.+++++++                  +++|+.+++++|+++|+|.|+.. +...|++|+
T Consensus        75 ~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~  154 (491)
T 4gc0_A           75 GGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAEL  154 (491)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            35689999999999999999999999988                  47899999999999999998875 556789999


Q ss_pred             cCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhc--------ccchHHHHHHHHHHHHHHHHHHHhcCCChhHHhhcCChH
Q 013910           82 VPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMP--------ILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRIT  153 (434)
Q Consensus        82 ~p~~~Rg~~~~~~~~~~~~G~~l~~~l~~~~~~--------~~~Wr~~f~~~~i~~~l~~~~~~~lpESp~~l~~~~~~~  153 (434)
                      +|+++||+..++.+.++..|.++++.+++....        ..+||+++.+..++.++..+..+++||||+|+..|+|.|
T Consensus       155 ~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~  234 (491)
T 4gc0_A          155 APAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQE  234 (491)
T ss_dssp             SCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHH
T ss_pred             CCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchh
Confidence            999999999999999999999999888776532        357999999999999998888899999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCCCCccCCCCCCCcccccCCCCccccccccccccccccccchhhhccCcchHHHHHHHHHHHH
Q 013910          154 DAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYF  233 (434)
Q Consensus       154 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  233 (434)
                      |+.+.+++..+.+..+               ++..  +..+    ..++.   ++. ......+..+.  .........+
T Consensus       235 ~a~~~l~~~~~~~~~~---------------~~~~--~~~~----~~~~~---~~~-~~~~~~~~~~~--~~~~~~~~~~  287 (491)
T 4gc0_A          235 QAEGILRKIMGNTLAT---------------QAVQ--EIKH----SLDHG---RKT-GGRLLMFGVGV--IVIGVMLSIF  287 (491)
T ss_dssp             HHHHHHHHHHHHHHHH---------------HHHH--HHHH----HHHHH---HHH-TTHHHHSCCTH--HHHHHHHHHH
T ss_pred             HHHHhHHHhcCCchhH---------------HHHH--HHHH----HHHhh---hhh-hhHHHHhcccH--HHHHHHHHHH
Confidence            9999999876532110               0000  0000    00000   000 01111121111  1111122222


Q ss_pred             HHHHHHHHHHHHHHhhhcccCCCCcccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHH
Q 013910          234 GNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFL  313 (434)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~  313 (434)
                      .+...++.+..+.+.+....           +...........+.++..+++.++++++.||+|||+.++.+...+.+.+
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~  356 (491)
T 4gc0_A          288 QQFVGINVVLYYAPEVFKTL-----------GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGM  356 (491)
T ss_dssp             HHHTCHHHHHHHHHHHHHHS-----------SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHH
T ss_pred             HHHhhhhHHHhcchHHHHhc-----------CCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHH
Confidence            22222222222222222110           1112233445566678889999999999999999999988776666554


Q ss_pred             HHHHh--h-h-hhHHHH-HHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhhh----
Q 013910          314 LPLVT--L-Q-SNILLT-ALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTS----  384 (434)
Q Consensus       314 ~~~~~--~-~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~----  384 (434)
                      +.+..  . . ...... ........+..+..++.|.+.+|++|++.|+++.|++++++++++++.+++.+.+.+.    
T Consensus       357 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~  436 (491)
T 4gc0_A          357 FSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLV  436 (491)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHH
T ss_pred             HHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44322  1 1 112211 1222222334455678899999999999999999999999999999999888866442    


Q ss_pred             --cchhhHHHHHHHHHHHHHHHHHhcccccCCcccccccccccC
Q 013910          385 --CHQTAAILLLEALIVLSVVVILLIPFETKGKELVNTIDGVSN  426 (434)
Q Consensus       385 --~g~~~~~~~~~~~~~i~~~~~~~~~~et~~~~~~e~~~~~~~  426 (434)
                        .+....+++++++++++.++.+++.||||||++||+++.-++
T Consensus       437 ~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~  480 (491)
T 4gc0_A          437 AHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEP  480 (491)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC-
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCC
Confidence              223456788999999999999999999999999998765444

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.96  E-value=3.1e-27  Score=233.44  Aligned_cols=337  Identities=15%  Similarity=0.185  Sum_probs=222.2

Q ss_pred             hhhHhhhcchHHHHHHHHHHHHHHHHHhh----cccHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHHHHH
Q 013910           22 PLYFIFAFSRMSILGGALVTFVAGLLSAF----SPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFST   96 (434)
Q Consensus        22 ~~~~~~~GRr~~l~~~~~~~~i~~~~~~~----~~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~   96 (434)
                      ..+.||+|||+.+..+.+++.++.++.++    ++|+..++++|++.|++.|... ....++.|++|+++|++..++.+.
T Consensus        83 G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~  162 (451)
T 1pw4_A           83 GSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNC  162 (451)
T ss_dssp             HHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHH
T ss_pred             HHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHH
Confidence            46899999999999999999999999999    9999999999999999988654 556788999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHHH-HHHHhcCCChhHHhhcCChHHHHHHHHHHHHHcCCCCCCCC
Q 013910           97 FWTFGSVSEAALAWIVMPILT-WRWLLALSAIPAFVLL-IFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGN  174 (434)
Q Consensus        97 ~~~~G~~l~~~l~~~~~~~~~-Wr~~f~~~~i~~~l~~-~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~  174 (434)
                      +..+|.++++.++..+.+..+ ||+.|++.++..++.. +..+++||+|+....+.+.+                   . 
T Consensus       163 ~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~-  222 (451)
T 1pw4_A          163 AHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEE-------------------Y-  222 (451)
T ss_dssp             HHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTT-------------------T-
T ss_pred             HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhh-------------------h-
Confidence            999999999999887777777 9999999988777654 45567899987421110000                   0 


Q ss_pred             ccCCCCCCCcccccCCCCccccccccccccccccccch--hhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 013910          175 LTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSS--FLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGS  252 (434)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  252 (434)
                       .    .+ ++  .+.+++      +++    +...++  .+..++.+..   .......+.....+++...+.+.+...
T Consensus       223 -~----~~-~~--~~~~~~------~~~----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (451)
T 1pw4_A          223 -K----ND-YP--DDYNEK------AEQ----ELTAKQIFMQYVLPNKLL---WYIAIANVFVYLLRYGILDWSPTYLKE  281 (451)
T ss_dssp             -C----CC--------------------------CCTHHHHHHTSSCHHH---HHHHHHHHHHHHHHHHHHHHHHHHBTT
T ss_pred             -c----cc-cc--ccchhh------hhc----ccccccchHHHHHcCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             0    00 00  000000      000    000011  1223322211   122222233333344444444433321


Q ss_pred             cCCCCcccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhh--chhHHHHHHHHHHH-HHHHHHHhhh--hhHHHHH
Q 013910          253 QSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRV--GRKLSMTIMFIFVC-IFLLPLVTLQ--SNILLTA  327 (434)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~--gRR~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~  327 (434)
                      .          .+.+............++.+++.++.+++.||+  |||+.+..+..+.. +.++.+....  +.+....
T Consensus       282 ~----------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (451)
T 1pw4_A          282 V----------KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMI  351 (451)
T ss_dssp             B----------SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHH
T ss_pred             h----------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHH
Confidence            1          011112222334455677889999999999999  99998877665554 3333222221  2222222


Q ss_pred             HHHHHHHHHhhhhhhhhhhcccccCCCchhhHHhHHHHhhhH-hHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHH
Q 013910          328 LLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRI-GGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVIL  406 (434)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~a~gi~~~~~~i-g~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~  406 (434)
                      ......++..+..+..+.+..|.+|++.|+++.|+.+.+.++ ++.++|.+.+.+.+..+....+++.+++++++.+..+
T Consensus       352 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  431 (451)
T 1pw4_A          352 CMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI  431 (451)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence            222222233344566678899999999999999999999999 9999999999988877766677777777777777666


Q ss_pred             hcc
Q 013910          407 LIP  409 (434)
Q Consensus       407 ~~~  409 (434)
                      ++.
T Consensus       432 ~~~  434 (451)
T 1pw4_A          432 VVM  434 (451)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.94  E-value=1.7e-24  Score=213.05  Aligned_cols=311  Identities=13%  Similarity=0.066  Sum_probs=203.3

Q ss_pred             hhhHhhhcchHHHHHHHHHHHHHHHHH---hhcccHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHHHHHH
Q 013910           22 PLYFIFAFSRMSILGGALVTFVAGLLS---AFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTF   97 (434)
Q Consensus        22 ~~~~~~~GRr~~l~~~~~~~~i~~~~~---~~~~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~   97 (434)
                      ..+.||+|||+.+..+.+++.++.++.   ++++|+..++++|++.|++.|... ....++.|+.|+++|++..++.+.+
T Consensus        82 G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  161 (438)
T 3o7q_A           82 GILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTF  161 (438)
T ss_dssp             HHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHH
T ss_pred             HHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHH
Confidence            469999999999999999999999999   889999999999999999988764 5567889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh-cccc-------------------------hHHHHHHHHHHHHHHHHHHHh--cCCChhHHhhc
Q 013910           98 WTFGSVSEAALAWIVM-PILT-------------------------WRWLLALSAIPAFVLLIFIVF--MPESPRYLCTK  149 (434)
Q Consensus        98 ~~~G~~l~~~l~~~~~-~~~~-------------------------Wr~~f~~~~i~~~l~~~~~~~--lpESp~~l~~~  149 (434)
                      ..+|.++++.++..+. +..+                         ||+.|.+.++..++..+..++  .||+++..   
T Consensus       162 ~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---  238 (438)
T 3o7q_A          162 NSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN---  238 (438)
T ss_dssp             HHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTC---
T ss_pred             HHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccc---
Confidence            9999999999988776 4433                         999998877766655444333  45544200   


Q ss_pred             CChHHHHHHHHHHHHHcCCCCCCCCccCCCCCCCcccccCCCCccccccccccccccccccchhhhccCcchHHHHHHHH
Q 013910          150 GRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLW  229 (434)
Q Consensus       150 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  229 (434)
                                                        +++   .++..              ....++.+++.+......+..
T Consensus       239 ----------------------------------~~~---~~~~~--------------~~~~~~~~~~~~~~~~~~~~~  267 (438)
T 3o7q_A          239 ----------------------------------HSD---AKQGS--------------FSASLSRLARIRHWRWAVLAQ  267 (438)
T ss_dssp             ----------------------------------CCC---SSTTS--------------HHHHHHHHTTCSHHHHHHHHH
T ss_pred             ----------------------------------ccc---ccccc--------------hhhhHHHHHhChHHHHHHHHH
Confidence                                              000   00000              001222333333222222222


Q ss_pred             HHHHHHHHHHHHHHHHHHhh-hcccCCCCcccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHH
Q 013910          230 VLYFGNSFVYYGIVLLASEL-SGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIF  308 (434)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~  308 (434)
                      ..   ....+++...+.+.+ ....          .+.+............+.+++|.+++++++||+|||+.+..+.++
T Consensus       268 ~~---~~~~~~~~~~~~~~~~~~~~----------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~  334 (438)
T 3o7q_A          268 FC---YVGAQTACWSYLIRYAVEEI----------PGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALI  334 (438)
T ss_dssp             HH---HHHHHHHHHHHHHHHHHHHS----------TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HH---HHHHHHHHHHHHHHHhhhcc----------CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence            21   122222222222222 1110          011111222233445677888999999999999999999888777


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhhhcc-h
Q 013910          309 VCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH-Q  387 (434)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g-~  387 (434)
                      ..+..+......+....... ....++....++..+.+..|.+|++ |+++.++.. .+.+++.++|.+.+.+.+..| .
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~  411 (438)
T 3o7q_A          335 AMALCLISAFAGGHVGLIAL-TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNI  411 (438)
T ss_dssp             HHHHHHHHHHCCHHHHHHHH-HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHHHcCCcHHHHHH-HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcch
Confidence            66655544443332222222 2222333445677888889999988 889988877 788999999999999988876 5


Q ss_pred             hhHHHHHHHHHHHHH
Q 013910          388 TAAILLLEALIVLSV  402 (434)
Q Consensus       388 ~~~~~~~~~~~~i~~  402 (434)
                      ...+.+.+++.++..
T Consensus       412 ~~~~~~~~~~~~~~~  426 (438)
T 3o7q_A          412 PTAELIPALCFAVIF  426 (438)
T ss_dssp             GGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            555555444444433

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.91  E-value=1.8e-23  Score=208.99  Aligned_cols=365  Identities=12%  Similarity=0.011  Sum_probs=196.4

Q ss_pred             hhhhHhh-hcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCc--chhHHHHHHH
Q 013910           21 EPLYFIF-AFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSN--RGKWMVVFST   96 (434)
Q Consensus        21 ~~~~~~~-~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~--Rg~~~~~~~~   96 (434)
                      ...+.|| +|||+++..+.++..++.++.++++|+..++++|++.|+|.|... ....++.|++|+++  |+...+.++.
T Consensus        74 ~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  153 (491)
T 4aps_A           74 GGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVF  153 (491)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHH
T ss_pred             HHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHH
Confidence            3468999 899999999999999999999999999999999999999988754 55678899999999  7778888999


Q ss_pred             HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhc-CCCh----hHHhhcCChHHHHHHHHH----------
Q 013910           97 FWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFM-PESP----RYLCTKGRITDAHNILDK----------  161 (434)
Q Consensus        97 ~~~~G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~~~~~l-pESp----~~l~~~~~~~~a~~~l~~----------  161 (434)
                      +..+|..+++.++..+.+..+||+.|++.++..++..+..... |+..    +-...+.+.++.++..++          
T Consensus       154 ~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~  233 (491)
T 4aps_A          154 GINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIA  233 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHH
Confidence            9999999999999888888899999999877666554433322 2110    000011122333332222          


Q ss_pred             ---HHHHcCCCCCCCCccCCCCCCCcccccCCCCccccccccccccccccccchhhhccCcchHHHHHHHHHHHHHHHHH
Q 013910          162 ---IAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFV  238 (434)
Q Consensus       162 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  238 (434)
                         .....+..            +.++.....................++.  .......++..+ ....+...+.....
T Consensus       234 ~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~  298 (491)
T 4aps_A          234 IIVVMNLVGWN------------SLPAYINLLTIVAIAIPVFYFAWMISSV--KVTSTEHLRVVS-YIPLFIAAVLFWAI  298 (491)
T ss_dssp             HHHHHHHHSSC------------CTTHHHHHHHHHHHHHHHHHHHHHC--------------CTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCc------------ccccchhhhhHHHHHHHHHHHHHHhhcc--cccHHHHHHHHH-HHHHHHHHHHHHHH
Confidence               00011100            0000000000000000000000000000  000000000000 01111111111111


Q ss_pred             HHH----HHHHHHhhhcccCCCCcccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHH-----HHHHHH
Q 013910          239 YYG----IVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMT-----IMFIFV  309 (434)
Q Consensus       239 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~-----~~~~~~  309 (434)
                      +..    +..+....... +.          .. ..  .......+..+++..+.+++.||+|||+...     .+..+.
T Consensus       299 ~~~~~~~~~~~~~~~~~~-~~----------~~-~~--~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~  364 (491)
T 4aps_A          299 EEQGSVVLATFAAERVDS-SW----------FP-VS--WFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFA  364 (491)
T ss_dssp             HGGGGTHHHHHHHHSCCC-SS----------SC-SG--GGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHH
T ss_pred             HhhccHHHHHHHHHHhcc-Cc----------cC-HH--HHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHH
Confidence            111    11111111100 00          00 00  0112333455667778889999999986543     444433


Q ss_pred             HHHHHHHHhhh---------hhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHH
Q 013910          310 CIFLLPLVTLQ---------SNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVG  380 (434)
Q Consensus       310 ~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~  380 (434)
                      ++....+....         +.+..........+......+..+.+..|.+|++.|+++.|+.+...++|+.++|.+.+.
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~  444 (491)
T 4aps_A          365 GLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTL  444 (491)
T ss_dssp             HHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33322222110         112222221121122223356678899999999999999999999999999999998876


Q ss_pred             HhhhcchhhHHHHHHHHHHHHHHHHHhcccccCCc
Q 013910          381 LVTSCHQTAAILLLEALIVLSVVVILLIPFETKGK  415 (434)
Q Consensus       381 l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~et~~~  415 (434)
                      +.+. +....+.+++++++++.++.+++.++++++
T Consensus       445 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (491)
T 4aps_A          445 YNAK-SEVAYFSYFGLGSVVLGIVLVFLSKRIQGL  478 (491)
T ss_dssp             GGGS-STTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred             Hhcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5543 444567777888888888888887777655

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.86  E-value=5.3e-22  Score=191.37  Aligned_cols=124  Identities=13%  Similarity=0.110  Sum_probs=109.3

Q ss_pred             hhhhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHHHHHHHH
Q 013910           21 EPLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWT   99 (434)
Q Consensus        21 ~~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~   99 (434)
                      .+.+.||+|||+.+..+..+..++.++.++++|+..+++.|++.|++.+... ....++.|+.|+++|++..+..+.+..
T Consensus        55 ~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (375)
T 2gfp_A           55 YGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGIL  134 (375)
T ss_dssp             HHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHH
T ss_pred             HHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence            3469999999999999999999999999999999999999999999988654 456788999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH-HHHhcCCChh
Q 013910          100 FGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLI-FIVFMPESPR  144 (434)
Q Consensus       100 ~G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~-~~~~lpESp~  144 (434)
                      +|.++++.++..+.+..+||+.|.+.++..++..+ ..+.+||+|+
T Consensus       135 ~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (375)
T 2gfp_A          135 VSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRP  180 (375)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCST
T ss_pred             HHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCC
Confidence            99999999998888878999999998887776654 4556788764

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.85  E-value=8.1e-21  Score=186.05  Aligned_cols=335  Identities=13%  Similarity=0.060  Sum_probs=181.6

Q ss_pred             hhHhhhcchHHHHHHHHHHHHHH---HHHhhcccHH-HHHHHHHHHHhcCCCch-hhhhhhhhccCC--CcchhHHHHHH
Q 013910           23 LYFIFAFSRMSILGGALVTFVAG---LLSAFSPNYI-SLLILRGLAGAGLGSGH-VFFSWFMEFVPP--SNRGKWMVVFS   95 (434)
Q Consensus        23 ~~~~~~GRr~~l~~~~~~~~i~~---~~~~~~~~~~-~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~--~~Rg~~~~~~~   95 (434)
                      .++||+|||+.+..+..++.++.   ....+++... .++.+|++.|++.|... .......++.++  ++||...+..+
T Consensus        65 ~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  144 (417)
T 2cfq_A           65 LLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRAR  144 (417)
T ss_dssp             HHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHS
T ss_pred             HHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHH
Confidence            59999999999999887765432   1112222211 24556777776655432 112222233332  35677777777


Q ss_pred             HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcCCChhHHhhcCChHHHHHHHHHHHHHcCCCCCCCCc
Q 013910           96 TFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNL  175 (434)
Q Consensus        96 ~~~~~G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~  175 (434)
                      .+..+|..+++.++..+.+ .+||+.|++.+++.++..+..++.||+|..   +.+.+                      
T Consensus       145 ~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~---~~~~~----------------------  198 (417)
T 2cfq_A          145 MFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTDAPS---SATVA----------------------  198 (417)
T ss_dssp             SSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCCCSC---SSCSS----------------------
T ss_pred             HHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCccccc---ccccc----------------------
Confidence            7778888888888776654 589999998877765554444444433210   00000                      


Q ss_pred             cCCCCCCCcccccCCCCccccccccccccccccccchhhhccC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 013910          176 TSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFS-PRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQS  254 (434)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (434)
                            +.++    .+++             +...+.....++ ++.+... +.   .+.....++....+.+.+.....
T Consensus       199 ------~~~~----~~~~-------------~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~  251 (417)
T 2cfq_A          199 ------NAVG----ANHS-------------AFSLKLALELFRQPKLWFLS-LY---VIGVSCTYDVFDQQFANFFTSFF  251 (417)
T ss_dssp             ------SSSS----SCCC-------------CCCHHHHHHHTTCHHHHHHH-HH---HHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             ------cccc----cccc-------------cccHHHHHHHhcCCchhhHH-HH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence                  0000    0000             000011222332 3322211 11   11111112211111111110000


Q ss_pred             CCCcccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 013910          255 KCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARM  334 (434)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (434)
                             ...............+..+.++++.++.++++||+|||+.+..+..+..+..+......+.+..........+
T Consensus       252 -------~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  324 (417)
T 2cfq_A          252 -------ATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMF  324 (417)
T ss_dssp             -------SSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHH
T ss_pred             -------hccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence                   0000001111112234445677889999999999999998887766665544433332222222111111111


Q ss_pred             HHhhhhhhhhhhcccccCCCchhhHHhHH-HHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccC
Q 013910          335 FSMGTFIIANIFAPEIYPTSMRSTGAGVA-YAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  413 (434)
Q Consensus       335 ~~~~~~~~~~~~~~El~P~~~R~~a~gi~-~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~et~  413 (434)
                      +........+.+.+|.+|++.|+++.|+. +..+++|++++|.+.+.+.+..+....+.+.+++++++.+..++..||++
T Consensus       325 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~  404 (417)
T 2cfq_A          325 EVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG  404 (417)
T ss_dssp             HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred             HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence            11122344578999999999999999996 67778999999999998888666556677778888888887777777766


Q ss_pred             Cccc
Q 013910          414 GKEL  417 (434)
Q Consensus       414 ~~~~  417 (434)
                      ..++
T Consensus       405 ~~~~  408 (417)
T 2cfq_A          405 PLSL  408 (417)
T ss_dssp             TTCS
T ss_pred             chHH
Confidence            5444

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.83  E-value=8.4e-20  Score=183.97  Aligned_cols=117  Identities=15%  Similarity=0.027  Sum_probs=101.3

Q ss_pred             hhhhHhhh-cchHHHHHHHHHHHHHHHHHhhcc-cHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHH---H
Q 013910           21 EPLYFIFA-FSRMSILGGALVTFVAGLLSAFSP-NYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVV---F   94 (434)
Q Consensus        21 ~~~~~~~~-GRr~~l~~~~~~~~i~~~~~~~~~-~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~---~   94 (434)
                      .+++.||+ |||+.+..+.++..++.++.++++ |+..++++|++.|++.|... ....++.|++|+++|++..+.   .
T Consensus        74 ~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  153 (524)
T 2xut_A           74 GGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMF  153 (524)
T ss_dssp             HHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHH
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHH
Confidence            34689999 999999999999999999999998 99999999999999988764 556788999999999887766   8


Q ss_pred             HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHH
Q 013910           95 STFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIV  137 (434)
Q Consensus        95 ~~~~~~G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~~~~  137 (434)
                      +.+..+|..+++.++..+.+..+||+.|.+.++..++..+...
T Consensus       154 ~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~  196 (524)
T 2xut_A          154 YFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFW  196 (524)
T ss_dssp             HHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999988887778999999998887666544443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.26  E-value=2.5e-10  Score=111.94  Aligned_cols=140  Identities=14%  Similarity=0.046  Sum_probs=101.7

Q ss_pred             HHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHh----hhhhHHHHHHHHHHHHHHhhhhhhhhhhcccc
Q 013910          275 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT----LQSNILLTALLSGARMFSMGTFIIANIFAPEI  350 (434)
Q Consensus       275 ~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El  350 (434)
                      .....+...++.+++|.++||+|||+.+..+.++.++..+....    ..+.+......+...++.....+....+.+|.
T Consensus        68 ~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~  147 (451)
T 1pw4_A           68 LSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHW  147 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHH
Confidence            34455677889999999999999999998888777766555444    33222222222222222333456678899999


Q ss_pred             cCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhhhcc-hhhHHHHHHHHHHHHHHHHHhcccccCC
Q 013910          351 YPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH-QTAAILLLEALIVLSVVVILLIPFETKG  414 (434)
Q Consensus       351 ~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g-~~~~~~~~~~~~~i~~~~~~~~~~et~~  414 (434)
                      +|++.|+++.|+.+....+|.+++|.+.+.+.+..+ ....+++.++++++..+..++..||+..
T Consensus       148 ~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~  212 (451)
T 1pw4_A          148 WSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ  212 (451)
T ss_dssp             CTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred             CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence            999999999999999999999999999888777666 6667777777777777766666667654

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.15  E-value=3.1e-09  Score=103.79  Aligned_cols=109  Identities=13%  Similarity=0.045  Sum_probs=79.6

Q ss_pred             HHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHH---HhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccc
Q 013910          274 NVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPL---VTLQSNILLTALLSGARMFSMGTFIIANIFAPEI  350 (434)
Q Consensus       274 ~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El  350 (434)
                      ......+...++.++.|.++||+|||+.+..+.++.++..+..   ....+.+......+...++.....+....+.+|.
T Consensus        66 ~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~  145 (438)
T 3o7q_A           66 IQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVL  145 (438)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHH
Confidence            3445556778899999999999999999998877777655544   3323222222222222222334456678889999


Q ss_pred             cCCCchhhHHhHHHHhhhHhHhhHHHHHHHHh
Q 013910          351 YPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLV  382 (434)
Q Consensus       351 ~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~  382 (434)
                      +|++.|+.+.|+.+....+|.+++|.+.+.+.
T Consensus       146 ~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  177 (438)
T 3o7q_A          146 GPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_dssp             SCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred             cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999888777

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.15  E-value=1.6e-09  Score=107.65  Aligned_cols=139  Identities=12%  Similarity=0.027  Sum_probs=98.7

Q ss_pred             HHHHHHhhhhhHHHHHHHHHHh-hchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccccC
Q 013910          274 NVFITSFAELPGLLTAALLVDR-VGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYP  352 (434)
Q Consensus       274 ~~~~~~~~~~~g~~~~~~l~dr-~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P  352 (434)
                      ......++..++.+++|+++|| +|||+.+..+.++..+..+......+.+......+...++.....+....+.+|.+|
T Consensus        59 ~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~  138 (491)
T 4aps_A           59 IMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYD  138 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcC
Confidence            3345567778899999999999 899999998887777666555443333322222222222333445677889999999


Q ss_pred             CCc--hhhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhccccc
Q 013910          353 TSM--RSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFET  412 (434)
Q Consensus       353 ~~~--R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~et  412 (434)
                      ++.  |+++.++.+....+|..++|.+.+.+.+..+....+.+.++..+++.+..++..|+.
T Consensus       139 ~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~  200 (491)
T 4aps_A          139 EHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKT  200 (491)
T ss_dssp             SCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence            988  778888888999999999999999888776666667776666666666655554443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.03  E-value=2.5e-09  Score=102.34  Aligned_cols=142  Identities=18%  Similarity=0.056  Sum_probs=99.6

Q ss_pred             HHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcccccCC
Q 013910          274 NVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPT  353 (434)
Q Consensus       274 ~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~  353 (434)
                      ......+...++.+..|+++||+|||+.+..+..+..+..+......+.+..........++.....+....+.+|.+|+
T Consensus        40 ~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~  119 (375)
T 2gfp_A           40 VMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYER  119 (375)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCH
Confidence            33455567788899999999999999998887777666555444333322222222222222233456677888999999


Q ss_pred             CchhhHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccCCc
Q 013910          354 SMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGK  415 (434)
Q Consensus       354 ~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~et~~~  415 (434)
                      +.|+++.++.+....+|..++|.+.+.+.+..+....+.+.++..++..+...+..||++.+
T Consensus       120 ~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (375)
T 2gfp_A          120 TQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPV  181 (375)
T ss_dssp             SSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTT
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCC
Confidence            99999999999999999999999988776655555566666776666666566666777654

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.95  E-value=1.9e-08  Score=100.81  Aligned_cols=136  Identities=15%  Similarity=0.079  Sum_probs=92.8

Q ss_pred             HHHHhhhhhHHHHHHHHHHhh-chhHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHhhhhhhhhhhcccccCC
Q 013910          276 FITSFAELPGLLTAALLVDRV-GRKLSMTIMFIFVCIFLLPLVTLQ-SNILLTALLSGARMFSMGTFIIANIFAPEIYPT  353 (434)
Q Consensus       276 ~~~~~~~~~g~~~~~~l~dr~-gRR~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~  353 (434)
                      ....+...++.+++|+++||+ |||+.+..+.++..+..+...... +.+......+...++.....+....+.+|.+|+
T Consensus        61 ~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~  140 (524)
T 2xut_A           61 HSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQ  140 (524)
T ss_dssp             HHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCST
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCc
Confidence            344566778899999999999 999999888777666555444433 333222222222222233456778889999999


Q ss_pred             CchhhHHhH---HHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccc
Q 013910          354 SMRSTGAGV---AYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFE  411 (434)
Q Consensus       354 ~~R~~a~gi---~~~~~~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e  411 (434)
                      +.|+++.+.   .+....+|+.++|.+.+.+.+..+....+.+.+++.+++.+..++..++
T Consensus       141 ~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~  201 (524)
T 2xut_A          141 SNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKR  201 (524)
T ss_dssp             TTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSS
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            999776665   8888889999999988877776665666666666666665555544433

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.64  E-value=2.8e-08  Score=96.70  Aligned_cols=125  Identities=13%  Similarity=0.092  Sum_probs=97.3

Q ss_pred             hhhhhhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCc-hhhhhhhhhccCCCcchhHHHH-HHH
Q 013910           19 LLEPLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVV-FST   96 (434)
Q Consensus        19 ~~~~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~-~~~~~~~~E~~p~~~Rg~~~~~-~~~   96 (434)
                      ++.+++.||+|||+.+..+..+..++.++.++.++...+++..++.|++.+.. .....+..|..|++.||...++ ++.
T Consensus       277 ~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~  356 (417)
T 2cfq_A          277 FFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCF  356 (417)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence            45567999999999999888888877777778888888888888888775433 2345678899999999999888 578


Q ss_pred             HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHH-HhcCCCh
Q 013910           97 FWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFI-VFMPESP  143 (434)
Q Consensus        97 ~~~~G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~~~-~~lpESp  143 (434)
                      ...+|..+++.++..+.+..+|+..|.+.++..++..+.. ...||.+
T Consensus       357 ~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~  404 (417)
T 2cfq_A          357 FKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG  404 (417)
T ss_dssp             THHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred             HHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence            8889999999888877777789999988877766655443 3455543

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.61  E-value=1.4e-06  Score=86.24  Aligned_cols=103  Identities=12%  Similarity=0.016  Sum_probs=70.8

Q ss_pred             HhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHh------------------hhhhHHHHHHHHHHHHHHhhhh
Q 013910          279 SFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT------------------LQSNILLTALLSGARMFSMGTF  340 (434)
Q Consensus       279 ~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~  340 (434)
                      .++.++|.+++|+++||+|||+.+.++.++..+..+...+                  ..+.....+.-+...+...+..
T Consensus        65 ~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~  144 (491)
T 4gc0_A           65 LIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLAS  144 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            4667889999999999999999999887776665443331                  1111112222222223333456


Q ss_pred             hhhhhhcccccCCCchhhHHhHHHHhhhHhHhhHHHHHHHH
Q 013910          341 IIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGL  381 (434)
Q Consensus       341 ~~~~~~~~El~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l  381 (434)
                      +....+.+|..|++.|+...++......+|..+++.+...+
T Consensus       145 ~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~  185 (491)
T 4gc0_A          145 MLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFI  185 (491)
T ss_dssp             HHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhh
Confidence            77888999999999999999998888777777766655433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	434
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	5e-07

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 49.3 bits (116), Expect = 5e-07
 Identities = 40/388 (10%), Positives = 99/388 (25%), Gaps = 48/388 (12%)

Query: 32  MSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGL-GSGHVFFSWFMEFVPPSNRGKW 90
             ++  A V    G +   + +   + +L  L G              + +     RG  
Sbjct: 94  AGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGI 153

Query: 91  MVVFSTFWTFGSVSEAAL--AWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCT 148
           + V++     G      L    +         L   +     V L     M ++P+    
Sbjct: 154 VSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ---- 209

Query: 149 KGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKS 208
                                          +  L        + P   + +    +   
Sbjct: 210 -------------------------------SCGLPPIEEYKNDYPDDYNEKAEQELTAK 238

Query: 209 GFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQD 268
                 +L +   +   I    +Y     +         E+         S       + 
Sbjct: 239 QIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFA--LDKSSWAYFLYEY 296

Query: 269 ASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTAL 328
           A +   +     ++              G      +  + +   +  +    +  +    
Sbjct: 297 AGIPGTLLCGWMSDKVFRG-------NRGATGVFFMTLVTIATIVYWMNPAGNPTVDMIC 349

Query: 329 LSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVC-PLVAVGLVTSCHQ 387
           +        G  ++  + A E+ P     T AG     G +GG V    +    V     
Sbjct: 350 MIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGW 409

Query: 388 TAAILLLEALIVLSVVVILLIPFETKGK 415
               +++    +L+V++++++    K +
Sbjct: 410 DGGFMVMIGGSILAVILLIVVMIGEKRR 437

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	434
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.95
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.85
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.12
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	98.88

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=2.9e-26  Score=223.35  Aligned_cols=343  Identities=14%  Similarity=0.169  Sum_probs=209.2

Q ss_pred             hhhHhhhcchHHHHHHHHHHHHHHHHHhhc----ccHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHHHHH
Q 013910           22 PLYFIFAFSRMSILGGALVTFVAGLLSAFS----PNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFST   96 (434)
Q Consensus        22 ~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~----~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~   96 (434)
                      ..+.||+|||+.+..+.++..++.++.+++    +++..++++|++.|++.|... ....++.|++|+++||+..++.+.
T Consensus        80 G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~  159 (447)
T d1pw4a_          80 GSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNC  159 (447)
T ss_dssp             HHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHH
T ss_pred             HHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhccccccccccc
Confidence            469999999999999999999999888776    478899999999999987764 556688999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHh-cccchHHHHHHHHHHHHHHHH-HHHhcCCChhHHhhcCChHHHHHHHHHHHHHcCCCCCCCC
Q 013910           97 FWTFGSVSEAALAWIVM-PILTWRWLLALSAIPAFVLLI-FIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGN  174 (434)
Q Consensus        97 ~~~~G~~l~~~l~~~~~-~~~~Wr~~f~~~~i~~~l~~~-~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~  174 (434)
                      +..+|..+++.++.... ...+||+.|++.+++.++..+ ...+++|+|+........                      
T Consensus       160 ~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------  217 (447)
T d1pw4a_         160 AHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIE----------------------  217 (447)
T ss_dssp             HHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCT----------------------
T ss_pred             ccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhh----------------------
Confidence            99999999988776644 356899999988887776644 455677777632110000                      


Q ss_pred             ccCCCCCCCcccccCCCCccccccccccccccccccchhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 013910          175 LTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQS  254 (434)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (434)
                         +.+.+..++.++..+         +.  ........+..++.+..   .......+......++...+.+.+..+. 
T Consensus       218 ---~~~~~~~~~~~~~~~---------~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  279 (447)
T d1pw4a_         218 ---EYKNDYPDDYNEKAE---------QE--LTAKQIFMQYVLPNKLL---WYIAIANVFVYLLRYGILDWSPTYLKEV-  279 (447)
T ss_dssp             ---TTCCC------------------------CCTHHHHHHTSSCHHH---HHHHHHHHHHHHHHHHHHHHHHHHBTTB-
T ss_pred             ---hhhhhcccchhhccc---------cc--cchhhHHHHHHHcCchH---HHHHHHhhhhhhhhhcchhhhhhhcccc-
Confidence               000000000000000         00  00000111122222211   1122222222333334433333332211 


Q ss_pred             CCCcccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHH---HHHh--hhhhHHHHHHH
Q 013910          255 KCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLL---PLVT--LQSNILLTALL  329 (434)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~  329 (434)
                               .+.+.........+..+.++++.++++++.||.+||...........+...   ....  ..+.+......
T Consensus       280 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (447)
T d1pw4a_         280 ---------KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICM  350 (447)
T ss_dssp             ---------SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHH
T ss_pred             ---------cccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHH
Confidence                     011112223334555677889999999999999987644333222222111   1111  11222222222


Q ss_pred             HHHHHHHhhhhhhhhhhcccccCCCchhhHHhHHHHhhhHh-HhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhc
Q 013910          330 SGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIG-GMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLI  408 (434)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~El~P~~~R~~a~gi~~~~~~ig-~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~  408 (434)
                      +...+...+..+..+.+..|.+|++.|+++.|+.+.+++++ .+++|.+.+.+.+..|....+++++++++++.++.+++
T Consensus       351 ~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  430 (447)
T d1pw4a_         351 IVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV  430 (447)
T ss_dssp             HHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence            22223334556677888999999999999999999999985 45678888988888777667777777777776666665


Q ss_pred             ccccC
Q 013910          409 PFETK  413 (434)
Q Consensus       409 ~~et~  413 (434)
                      .++.+
T Consensus       431 ~~~~~  435 (447)
T d1pw4a_         431 MIGEK  435 (447)
T ss_dssp             HHHHH
T ss_pred             HHhcc
Confidence            54433

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=8e-20  Score=174.13  Aligned_cols=335  Identities=10%  Similarity=-0.001  Sum_probs=190.7

Q ss_pred             hhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHH----HhcCCCch-hhhhhhhhccCC--CcchhHHHHHH
Q 013910           23 LYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLA----GAGLGSGH-VFFSWFMEFVPP--SNRGKWMVVFS   95 (434)
Q Consensus        23 ~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~----Gig~g~~~-~~~~~~~E~~p~--~~Rg~~~~~~~   95 (434)
                      .+.||+|||+.++++.....++..+..+..+.......+++.    |.+.+... .......+..++  +++....+...
T Consensus        65 ~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (417)
T d1pv7a_          65 LLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRAR  144 (417)
T ss_dssp             HHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHH
T ss_pred             HHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHh
Confidence            699999999999999999998888888877766554444444    33333322 222222222222  33445566667


Q ss_pred             HHHHHHHHHHHHHHHHHhcccchHHHHHHH-HHHHHHHHHHHHhcCCChhHHhhcCChHHHHHHHHHHHHHcCCCCCCCC
Q 013910           96 TFWTFGSVSEAALAWIVMPILTWRWLLALS-AIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGN  174 (434)
Q Consensus        96 ~~~~~G~~l~~~l~~~~~~~~~Wr~~f~~~-~i~~~l~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~  174 (434)
                      .....|..+++.++..+.+. +|+..+... ....+...+..+..||+|+...   +.++.                   
T Consensus       145 ~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-------------------  201 (417)
T d1pv7a_         145 MFGCVGWALGASIVGIMFTI-NNQFVFWLGSGCALILAVLLFFAKTDAPSSAT---VANAV-------------------  201 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSC---SSHHH-------------------
T ss_pred             hhhccccccccccccccccc-cccccccchhhHHHHHHHHHHHHhcccccchh---hhhhh-------------------
Confidence            77777878877777665544 455544444 4444444555666777765211   00000                   


Q ss_pred             ccCCCCCCCcccccCCCCccccccccccccccccccchhhhccC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 013910          175 LTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFS-PRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQ  253 (434)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (434)
                                  .++.++.               .......... +..+.............................  
T Consensus       202 ------------~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  252 (417)
T d1pv7a_         202 ------------GANHSAF---------------SLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFA--  252 (417)
T ss_dssp             ------------HSCCCCC---------------CHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSS--
T ss_pred             ------------hhhcccc---------------cccccccccccccccchhhhhHHHHHHHHhhhcccccccccccc--
Confidence                        0000000               0000111111 111111111111111111111111111110000  


Q ss_pred             CCCCcccccccCccchhHHHHHHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 013910          254 SKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGAR  333 (434)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (434)
                               .................+...++..+.+.+.||.|||+.+..+..+.++..+.+....+.+..........
T Consensus       253 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  323 (417)
T d1pv7a_         253 ---------TGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHM  323 (417)
T ss_dssp             ---------CHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred             ---------ccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHH
Confidence                     00011111222334445667788889999999999999998888777776665554444333333222222


Q ss_pred             HHHhhhhhhhhhhcccccCCCchhhHHhHHHHhh-hHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhccccc
Q 013910          334 MFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVG-RIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFET  412 (434)
Q Consensus       334 ~~~~~~~~~~~~~~~El~P~~~R~~a~gi~~~~~-~ig~~~~p~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~et  412 (434)
                      ++.....+....+.+|.+|++.|+++.|+.+++. .+|+.++|.+.+.+.|..|....++++++++++..++.++..+++
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~  403 (417)
T d1pv7a_         324 FEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGP  403 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            2333445677888999999999999999977654 589999999999999988877778888888888888887777666


Q ss_pred             CCcccc
Q 013910          413 KGKELV  418 (434)
Q Consensus       413 ~~~~~~  418 (434)
                      +..++.
T Consensus       404 ~~~~~~  409 (417)
T d1pv7a_         404 GPLSLL  409 (417)
T ss_dssp             SCTTHH
T ss_pred             Cccchh
Confidence            655553

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.12  E-value=1.7e-09  Score=103.16  Aligned_cols=139  Identities=14%  Similarity=0.054  Sum_probs=94.6

Q ss_pred             HHHHHhhhhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhh----hhhHHHHHHHHHHHHHHhhhhhhhhhhcccc
Q 013910          275 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTL----QSNILLTALLSGARMFSMGTFIIANIFAPEI  350 (434)
Q Consensus       275 ~~~~~~~~~~g~~~~~~l~dr~gRR~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El  350 (434)
                      .....++..++.+++|.++||+|||+.+..+.++.++..+.....    .+............++....++....+.+|.
T Consensus        65 ~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~  144 (447)
T d1pw4a_          65 LSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHW  144 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence            334456778899999999999999999998877776655443321    1112222222222222233456677889999


Q ss_pred             cCCCchhhHHhHHHHhhhHhHhhHHHHHHHHhhhc-chhhHHHHHHHHHHHHHHHHHhcccccC
Q 013910          351 YPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSC-HQTAAILLLEALIVLSVVVILLIPFETK  413 (434)
Q Consensus       351 ~P~~~R~~a~gi~~~~~~ig~~~~p~~~~~l~~~~-g~~~~~~~~~~~~~i~~~~~~~~~~et~  413 (434)
                      +|++.|+++.|+.+....+|+.++|.+...+.... +....+++.+.+.++..++.+++.+|++
T Consensus       145 ~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (447)
T d1pw4a_         145 WSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTP  208 (447)
T ss_dssp             CTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSS
T ss_pred             HHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccch
Confidence            99999999999999999999999998777655543 3344556666666666666666665543

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=98.88  E-value=2.1e-09  Score=100.68  Aligned_cols=122  Identities=12%  Similarity=0.092  Sum_probs=102.8

Q ss_pred             hhhhhhHhhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCCch-hhhhhhhhccCCCcchhHHHHH-HH
Q 013910           19 LLEPLYFIFAFSRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVF-ST   96 (434)
Q Consensus        19 ~~~~~~~~~~GRr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~Gig~g~~~-~~~~~~~E~~p~~~Rg~~~~~~-~~   96 (434)
                      .+.+.+.||+|||+.+..+..+..++.++..+.++...+++.-++.|++.+... ....++.|.+|++.||+..++. +.
T Consensus       277 ~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (417)
T d1pv7a_         277 FFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCF  356 (417)
T ss_dssp             TTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTT
T ss_pred             hhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHH
Confidence            345578999999999999999999999999999999999999999999987753 5567889999999999999874 56


Q ss_pred             HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH-HHhcC
Q 013910           97 FWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIF-IVFMP  140 (434)
Q Consensus        97 ~~~~G~~l~~~l~~~~~~~~~Wr~~f~~~~i~~~l~~~~-~~~lp  140 (434)
                      ...+|..+++.+++.+.+..||+..|.+.++..++..++ .+.++
T Consensus       357 ~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~  401 (417)
T d1pv7a_         357 FKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS  401 (417)
T ss_dssp             THHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            778999999999888888889999999888777665444 34444