Citrus Sinensis ID: 013912

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430----
MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFKQDELNTGGLDDEIKTKDLEGAEERDEKLSSAMEEMKLLQSKLSVMERYASILHGSIFGKPFAAEQDIPISLKDMGFFDITKEWENMLESADRSKLVRLERFYRNMLAGVKDKLMKRRIQEIVNECLHSSTIGK
cccEEEEEccccEEEEEcccccEEEEccccccccccccccccccEEccEEEcccccccEEEEEcccccEEEEEccccccccccccEEEEEccccccccccccccccccEEEcccccccccEEEEEccccccEEEEEcccccccccccEEEEEEccccccccccccccEEccEEcccccccccEEEEEcccccEEEEEccccEEEEccccccccccccccccccccccccEEEEEccccccccccccEEEEccccEEEEEEcccccEEEEEccccccccccccccccccEEEEccccccccEEEEEEEcccccEEEEEcccccccccccccccccccEEEEHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
cccEEEEEEcccEEEEEEcccEEEEEcccccccccccccccccccccccEHHHHcccEEEEEEEcccEEEEEEcccEEEEccccEEEEEccccccccccccccccccccHHHHHHHccccEEEEEEEcccEEEEEEcccccEEccccEEEEEcccccccccccccccccccccHHHHHcccEEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccccccccEHHHHHHccccccEEEEEEEcccEEEEEEccccEEEEEcccccccccccccccccccEEEccccHccccEEEEEEEccccEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHccccccccccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
msqicsvkagGMMSLAIDNAGAlwmwgncplpdssteggfslvssftpspvwdfhghTVVKVACGSEHVVALVSagetykgedlvcyswgannngqlglgdresrlrpKIIEtfnqdspwavYEVTCGSFHTALlthrkrpndmLESMCwtfglgengqlghgttqsalvpeqvkelpQYVYLVSVDCGLFHTSVVSsagdvwswgmekglglcpnasltrneagdaispilisgngphgpkfqdpvqvACGAAHTVlvtddgyklwswgrgrsgvlgtgktidffapaivlwpplteefkqdelntgglddeiktkdlegAEERDEKLSSAMEEMKLLQSKLSVMERYASIlhgsifgkpfaaeqdipislkdmgffdITKEWENMLESADRSKLVRLERFYRNMLAGVKDKLMKRRIQEIVNEClhsstigk
msqicsvkaGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIEtfnqdspwaVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFKQDelntgglddeiktkdlegaEERDEKLSSAMEEMKLLQSKLSVMERYASILHGSIFGKPFAAEQDIPISLKDMGFFDITKEWENMLesadrsklvrlERFYRNMLAGVKDKLMKRRIQEivneclhsstigk
MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFKQDELNTGGLDDEIKTKDLEGAEERDEKLSSAMEEMKLLQSKLSVMERYASILHGSIFGKPFAAEQDIPISLKDMGFFDITKEWENMLESADRSKLVRLERFYRNMLAGVKDKLMKRRIQEIVNECLHSSTIGK
****CSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEF******************************************LSVMERYASILHGSIFGKPFAAEQDIPISLKDMGFFDITKEWENMLESADRSKLVRLERFYRNMLAGVKDKLMKRRIQEIVNECL*******
MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRN**GDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFKQDELNTGGLDDEIKTKDLEGAEERDEKLSSAMEEMKLLQSKLSVMERYASILHGSIFGKPFAAEQDIPISLKDMGFFDITKEWENMLESADRSKLVRLERFYRNMLAGVKDKLMKRRIQEIVNECLHSS****
MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFKQDELNTGGLDDEIKTKDLE**********SAMEEMKLLQSKLSVMERYASILHGSIFGKPFAAEQDIPISLKDMGFFDITKEWENMLESADRSKLVRLERFYRNMLAGVKDKLMKRRIQEIVNECLHSSTIGK
MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFKQDELNTGGLDDEIKTKDLEGAEERDEKLSSAMEEMKLLQSKLSVMERYASILHGSIFGKPFAAEQDIPISLKDMGFFDITKEWENMLESADRSKLVRLERFYRNMLAGVKDKLMKRRIQEIVNECLHS*****
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MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFKQDELNTGGLDDEIKTKDxxxxxxxxxxxxxxxxxxxxxxxxLSVMERYASILHGSIFGKPFAAEQDIPISLKDMGFFDITKEWENMLESADRSKLVRLERFYRNMLAGVKDKLMKRRIQEIVNECLHSSTIGK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query434 2.2.26 [Sep-21-2011]
Q9FN03440 Ultraviolet-B receptor UV no no 0.594 0.586 0.284 7e-23
Q9UII4 1024 E3 ISG15--protein ligase yes no 0.419 0.177 0.351 4e-20
Q4U2R1 4836 E3 ubiquitin-protein liga yes no 0.582 0.052 0.272 6e-19
O95714 4834 E3 ubiquitin-protein liga no no 0.582 0.052 0.272 7e-19
Q9VR91 4912 Probable E3 ubiquitin-pro yes no 0.576 0.050 0.278 4e-18
Q15751 4861 Probable E3 ubiquitin-pro no no 0.845 0.075 0.264 3e-17
Q6P798 551 RCC1 and BTB domain-conta no no 0.504 0.397 0.296 3e-17
Q8IVU3 1022 Probable E3 ubiquitin-pro no no 0.495 0.210 0.292 6e-17
Q5RCZ7 551 RCC1 and BTB domain-conta no no 0.479 0.377 0.301 6e-17
O95199 551 RCC1 and BTB domain-conta no no 0.479 0.377 0.301 6e-17
>sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1 Back     alignment and function desciption
 Score =  108 bits (271), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 96/338 (28%), Positives = 143/338 (42%), Gaps = 80/338 (23%)

Query: 3   QICSVKAGGMMSLAIDNAGA---LWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
           QI SV  G   ++A   +G     W WG     D    G  +    FTP P+   HG  +
Sbjct: 68  QIVSVTCGADHTVAYSQSGMEVYSWGWG-----DFGRLGHGNSSDLFTPLPIKALHGIRI 122

Query: 60  VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
            ++ACG  H +A+   GE          SWG N NGQLGLGD E  L P+ I+ F     
Sbjct: 123 KQIACGDSHCLAVTMEGEVQ--------SWGRNQNGQLGLGDTEDSLVPQKIQAFEGIR- 173

Query: 120 WAVYEVTCGSFHTALLTH----------------------RKRPNDMLES---------- 147
             +  V  G+ HTA +T                       R  P  +  +          
Sbjct: 174 --IKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVAC 231

Query: 148 ------------MCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSV 195
                         +T+G  + GQLGHG  +  L+P +++ L    ++  +  G  HT  
Sbjct: 232 GWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNS-FISQISGGWRHTMA 290

Query: 196 VSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
           ++S G ++ WG  K   +G+  N         D  SP+ +       P  Q  VQV+CG 
Sbjct: 291 LTSDGKLYGWGWNKFGQVGVGNNL--------DQCSPVQV-----RFPDDQKVVQVSCGW 337

Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
            HT+ VT+    +++WGRG +G LG G+++D   P I+
Sbjct: 338 RHTLAVTERN-NVFAWGRGTNGQLGIGESVDRNFPKII 374
UV-B specific signaling component that acts as UV-B photoreceptor and plays a key role in establishing UV-protective responses in plants. Upon UV-B irradiation, UVR8 undergoes an immediate switch from homodimer to monomer, accumulates in the nucleus, interacts with the photomorphogenic repressor COP1 and regulates the expression of the transcription factor HY5 by associating with chromatin (through histone H2B binding) in the HY5 promoter region. UVR8 is involved in controlling aspects of leaf growth and morphogenesis in response to UV-B, is required for normal progression of endocycle and has a regulatory role in stomatal differentiation. Is required for plant circadian clock response to photomorphogenic UV-B light, partly through the transcriptional activation of responsive clock genes. Promotes photosynthetic efficiency at elevated levels of UV-B. Plays a role in mediating the effects of UV-B radiation on pathogen resistance by controlling the expression of the sinapate biosynthetic pathway. The two tryptophans, Trp-285 and Trp-233, serve collectively as the UV-B chromophore.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9UII4|HERC5_HUMAN E3 ISG15--protein ligase HERC5 OS=Homo sapiens GN=HERC5 PE=1 SV=2 Back     alignment and function description
>sp|Q4U2R1|HERC2_MOUSE E3 ubiquitin-protein ligase HERC2 OS=Mus musculus GN=Herc2 PE=1 SV=3 Back     alignment and function description
>sp|O95714|HERC2_HUMAN E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens GN=HERC2 PE=1 SV=2 Back     alignment and function description
>sp|Q9VR91|HERC2_DROME Probable E3 ubiquitin-protein ligase HERC2 OS=Drosophila melanogaster GN=HERC2 PE=1 SV=3 Back     alignment and function description
>sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens GN=HERC1 PE=1 SV=2 Back     alignment and function description
>sp|Q6P798|RCBT2_RAT RCC1 and BTB domain-containing protein 2 OS=Rattus norvegicus GN=Rcbtb2 PE=2 SV=1 Back     alignment and function description
>sp|Q8IVU3|HERC6_HUMAN Probable E3 ubiquitin-protein ligase HERC6 OS=Homo sapiens GN=HERC6 PE=2 SV=2 Back     alignment and function description
>sp|Q5RCZ7|RCBT2_PONAB RCC1 and BTB domain-containing protein 2 OS=Pongo abelii GN=RCBTB2 PE=2 SV=1 Back     alignment and function description
>sp|O95199|RCBT2_HUMAN RCC1 and BTB domain-containing protein 2 OS=Homo sapiens GN=RCBTB2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query434
255550918 565 Protein pim1, putative [Ricinus communis 0.976 0.750 0.743 0.0
359476350 564 PREDICTED: E3 ubiquitin-protein ligase H 0.974 0.75 0.735 0.0
449461323 571 PREDICTED: E3 ubiquitin-protein ligase H 0.986 0.749 0.688 1e-177
296081841441 unnamed protein product [Vitis vinifera] 0.919 0.904 0.712 1e-175
449507254 581 PREDICTED: E3 ubiquitin-protein ligase H 0.986 0.736 0.677 1e-175
224141731 561 predicted protein [Populus trichocarpa] 0.983 0.761 0.703 1e-174
356554552 576 PREDICTED: E3 ubiquitin-protein ligase H 0.972 0.732 0.683 1e-171
357466661 563 RCC1 and BTB domain-containing protein [ 0.986 0.760 0.669 1e-171
356507929 559 PREDICTED: E3 ubiquitin-protein ligase H 0.926 0.719 0.673 1e-167
99646741 573 regulator of chromosome condensation fam 0.981 0.743 0.645 1e-161
>gi|255550918|ref|XP_002516507.1| Protein pim1, putative [Ricinus communis] gi|223544327|gb|EEF45848.1| Protein pim1, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  653 bits (1685), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/432 (74%), Positives = 356/432 (82%), Gaps = 8/432 (1%)

Query: 3   QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
           ++CSVKAGGMMSLAIDN GALWMWGNCP  +S  E GFSLVSSFTP PVWDF+GHTVVKV
Sbjct: 142 KVCSVKAGGMMSLAIDNLGALWMWGNCPQQNS--ESGFSLVSSFTPIPVWDFYGHTVVKV 199

Query: 63  ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 122
           ACG+EHVVALVS GETYKGEDL+CYSWG NN+GQLGLGD ESR+ P+I+ETFNQDSPWAV
Sbjct: 200 ACGNEHVVALVSEGETYKGEDLLCYSWGNNNHGQLGLGDTESRVCPEIVETFNQDSPWAV 259

Query: 123 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 182
           YEV+CG+FHTALLT +KRPND L+S CWTFGLGENGQLG GTTQ+AL PE VKELP+Y Y
Sbjct: 260 YEVSCGAFHTALLTCKKRPNDKLQSTCWTFGLGENGQLGLGTTQNALKPEPVKELPEYAY 319

Query: 183 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 242
           L+SVDCGLFHTSVVSSAGDVWSWGM  GLGLCP+A  T  +AGDAISP+LI+G      K
Sbjct: 320 LISVDCGLFHTSVVSSAGDVWSWGMMNGLGLCPDARFTGTDAGDAISPLLITGT-----K 374

Query: 243 FQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFKQ 302
           F DPVQ+ CGAAHTVLVT+ GYKLWSWGRGRSG LG GK ID   P ++LWPPLTE  K 
Sbjct: 375 FNDPVQITCGAAHTVLVTNGGYKLWSWGRGRSGALGNGKEIDVLVPGVMLWPPLTEVVKN 434

Query: 303 DELNTGGLDDEIKTKDLEGAEERDEKLSSAMEEMKLLQSKLSVMERYASILHGSIFGKPF 362
            E N    +D +  K  E   E + KLS AMEEMKLLQSKL++MERYA ILHGSIFGKPF
Sbjct: 435 QESNNSVEEDNLVKKGSEEVTEMENKLSLAMEEMKLLQSKLTIMERYAGILHGSIFGKPF 494

Query: 363 AAEQDIPISLKDMGFFDITKEWENMLESADRSKLVRLERFYRNMLAGVKDKLMKRRIQEI 422
            AE D+PISL++   FDI K WE MLESADRSKL+RLE FYRNMLAGVKDK MKRRIQEI
Sbjct: 495 -AEDDLPISLQNSDTFDIAKAWEEMLESADRSKLIRLEIFYRNMLAGVKDKKMKRRIQEI 553

Query: 423 VNECLHSSTIGK 434
           + E L S T GK
Sbjct: 554 IQEYLPSVTPGK 565

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359476350|ref|XP_002283782.2| PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449461323|ref|XP_004148391.1| PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|296081841|emb|CBI20846.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449507254|ref|XP_004162977.1| PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224141731|ref|XP_002324218.1| predicted protein [Populus trichocarpa] gi|222865652|gb|EEF02783.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356554552|ref|XP_003545609.1| PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Glycine max] Back     alignment and taxonomy information
>gi|357466661|ref|XP_003603615.1| RCC1 and BTB domain-containing protein [Medicago truncatula] gi|355492663|gb|AES73866.1| RCC1 and BTB domain-containing protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356507929|ref|XP_003522715.1| PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Glycine max] Back     alignment and taxonomy information
>gi|99646741|emb|CAK22423.1| regulator of chromosome condensation family protein [Beta vulgaris] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query434
TAIR|locus:2144291553 AT5G11580 "AT5G11580" [Arabido 0.709 0.556 0.589 2e-132
TAIR|locus:2163986440 UVR8 "UVB-RESISTANCE 8" [Arabi 0.423 0.418 0.336 9.3e-16
UNIPROTKB|E2RDC2 4837 HERC2 "Uncharacterized protein 0.410 0.036 0.295 4.9e-12
RGD|1307989 3607 Herc2 "HECT and RLD domain con 0.410 0.049 0.290 4.6e-12
UNIPROTKB|F1M560 3643 Herc2 "Protein Herc2" [Rattus 0.410 0.048 0.290 4.7e-12
UNIPROTKB|G3MX12 4757 HERC2 "Uncharacterized protein 0.410 0.037 0.295 3.8e-12
UNIPROTKB|E1B782 4847 HERC2 "Uncharacterized protein 0.410 0.036 0.295 3.8e-12
UNIPROTKB|O95714 4834 HERC2 "E3 ubiquitin-protein li 0.410 0.036 0.290 6.3e-12
UNIPROTKB|D4ACN3 4779 Herc2 "Protein Herc2" [Rattus 0.410 0.037 0.290 6.3e-12
MGI|MGI:103234 4836 Herc2 "hect (homologous to the 0.410 0.036 0.290 6.3e-12
TAIR|locus:2144291 AT5G11580 "AT5G11580" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 971 (346.9 bits), Expect = 2.0e-132, Sum P(2) = 2.0e-132
 Identities = 188/319 (58%), Positives = 227/319 (71%)

Query:     3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 62
             ++C+VKAG MMSLAIDN G LWMWGN P  DS  +   S  S   P P+ DFHG TV+KV
Sbjct:   143 KVCTVKAGSMMSLAIDNVGGLWMWGNVPPQDSEPDPRLSFTSIPIPFPILDFHGRTVLKV 202

Query:    63 ACGSEHVVALVSAGETYKGE--DL-VCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
             ACG EHVVALV  G+ +K    D+ V YSWG N++GQLGLGD ESR RP+ +ETFNQ S 
Sbjct:   203 ACGDEHVVALVGPGDIHKDNSYDVSVLYSWGNNHHGQLGLGDGESRARPQTVETFNQKSG 262

Query:   120 WAVYEVTCGSFHTALLTHRKR-PNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 178
               VY++ CG+ HTALLT+RK  P     S+CWTFG GENGQLGH + +S+ +PE V +LP
Sbjct:   263 LTVYDIACGAHHTALLTYRKETPKG--PSICWTFGFGENGQLGHRSNKSSSLPEPVSDLP 320

Query:   179 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 238
             ++ YLVSVDCGLFHTSVVSS G VWSWGME+GLGLCP+ + T  EAGD   P  ISG   
Sbjct:   321 EHAYLVSVDCGLFHTSVVSSEGYVWSWGMERGLGLCPDVNFTEVEAGDDSVPRKISGGSS 380

Query:   239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTE 298
                +F+DPVQV+CGAAHTVLV D GYKLWSWGRGR+GVLGTG   D + P +V WP   +
Sbjct:   381 ---RFRDPVQVSCGAAHTVLVVDGGYKLWSWGRGRNGVLGTGNVSDCYVPTLVFWPNELK 437

Query:   299 EFKQDELNTG--GLDDEIK 315
               K++  + G     +EIK
Sbjct:   438 PEKEEVPDDGKSASTEEIK 456
GO:0003682 "chromatin binding" evidence=ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0008536 "Ran GTPase binding" evidence=ISS
TAIR|locus:2163986 UVR8 "UVB-RESISTANCE 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E2RDC2 HERC2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|1307989 Herc2 "HECT and RLD domain containing E3 ubiquitin protein ligase 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1M560 Herc2 "Protein Herc2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|G3MX12 HERC2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E1B782 HERC2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|O95714 HERC2 "E3 ubiquitin-protein ligase HERC2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|D4ACN3 Herc2 "Protein Herc2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:103234 Herc2 "hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query434
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 3e-25
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 2e-18
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 3e-15
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 1e-14
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 4e-13
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 2e-10
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 1e-08
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 2e-05
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 2e-05
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 3e-04
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 0.002
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information 
 Score =  107 bits (268), Expect = 3e-25
 Identities = 74/341 (21%), Positives = 130/341 (38%), Gaps = 56/341 (16%)

Query: 1   MSQICSVKAGGMMSLAIDNAGALWMWG-------------NCPLPDSSTEGGFSLVSSFT 47
            + I  +  GG  SL +D+ G L+ WG             +    ++            T
Sbjct: 103 KASIIKIACGGNHSLGLDHDGNLYSWGDNDDGALGRDIHKDICDQNNDIIDFDDYELEST 162

Query: 48  PSPVWDF----HGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRE 103
           P  V           VVK+ACG E  V L + G          YSWG    G+LG G  +
Sbjct: 163 PFKVPGGSSAKSHLRVVKLACGWEISVILTADGR--------VYSWGTFRCGELGQGSYK 214

Query: 104 SRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHG 163
           +  +  I  T  +    A+ ++  G+ H   LT+        E   + +G  + GQLG  
Sbjct: 215 NSQKTSIQFTPLKVPKKAIVQLAAGADHLIALTN--------EGKVYGWGSNQKGQLGRP 266

Query: 164 TTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNE 223
           T++   +   V +      +  V CG  H+  +   G++++WG+    G     S     
Sbjct: 267 TSERLKLVVLVGDPFAIRNIKYVACGKDHSLALDEDGEIYAWGVNI-FGQLGAGS----- 320

Query: 224 AGDAISPILISGNGPHGPKFQDP------VQVACGAAHTVLVTDDGYKLWSWGRGRSGVL 277
             D     L +      P ++          ++ G +H++++  DG  L+++GRG  G L
Sbjct: 321 --DGEIGALTT-----KPNYKQLLSGVTICSISAGESHSLILRKDG-TLYAFGRGDRGQL 372

Query: 278 GTGKTIDFFAPAIVLWPPLTEEFKQDELNTGGLDDEIKTKD 318
           G  +        +     L+   K +++  G   +  +T D
Sbjct: 373 GIQE---EITIDVSTPTKLSVAIKLEQVACGTHHNIARTDD 410

Length = 476
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 434
COG5184476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 100.0
COG5184476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 100.0
KOG1427443 consensus Uncharacterized conserved protein, conta 100.0
KOG1427443 consensus Uncharacterized conserved protein, conta 99.97
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.9
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.88
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 99.8
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 99.73
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.18
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.17
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 99.01
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 98.95
KOG0941 850 consensus E3 ubiquitin protein ligase [Posttransla 98.94
KOG0941 850 consensus E3 ubiquitin protein ligase [Posttransla 98.9
KOG3669 705 consensus Uncharacterized conserved protein, conta 93.77
KOG3669 705 consensus Uncharacterized conserved protein, conta 89.76
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=1.6e-39  Score=316.25  Aligned_cols=301  Identities=24%  Similarity=0.367  Sum_probs=222.4

Q ss_pred             CeEEEEecCCeEEEEecCCcEEEecCCCCCCCCCCCCc--------------cccccccceeecc----CCCCcEEEEEe
Q 013912            3 QICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGF--------------SLVSSFTPSPVWD----FHGHTVVKVAC   64 (434)
Q Consensus         3 kI~~Va~G~~h~~alt~~G~vy~wG~n~~G~qlg~g~~--------------~~~~~~~p~~v~~----~~~~~I~~Vs~   64 (434)
                      .|++++||++|+++|++||+||+||.|..| +||.-..              ......+|..|+.    ....+|++++|
T Consensus       105 ~i~~~acGg~hsl~ld~Dg~lyswG~N~~G-~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~c  183 (476)
T COG5184         105 SIIKIACGGNHSLGLDHDGNLYSWGDNDDG-ALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLAC  183 (476)
T ss_pred             eeEEeecCCceEEeecCCCCEEEeccCccc-ccccccccccccccccccccchhhcccCCceeeccccccCChheEEeec
Confidence            589999999999999999999999999999 7776551              2334667777776    22348999999


Q ss_pred             cCCeEEEEEcCCCcccCCCceEEEeeCCCCCcCCCCCCCCeec----ceeeeccCCCCCCcEEEEeecCceEEEEEccCC
Q 013912           65 GSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLR----PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKR  140 (434)
Q Consensus        65 G~~hs~~lt~~G~vy~~~~~~vy~wG~N~~GQLG~g~~~~~~~----P~~v~~~~~~~~~~I~~Is~G~~ht~~Lt~~G~  140 (434)
                      |++++++|+++|+        ||+||....+.++.+...+...    ++++....    ..|+++++|.+|.++|++.|+
T Consensus       184 g~e~svil~~~G~--------V~~~gt~r~~e~~~g~~~~s~k~~~~~~p~~v~~----~~i~qla~G~dh~i~lt~~G~  251 (476)
T COG5184         184 GWEISVILTADGR--------VYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVPK----KAIVQLAAGADHLIALTNEGK  251 (476)
T ss_pred             CCceEEEEccCCc--------EEEecCccccccccccccccccceeeeeeeecCc----hheeeeccCCceEEEEecCCc
Confidence            9999999999996        9999999999999885444322    33333321    369999999999999999999


Q ss_pred             CCCcCCCeEEEeecCCCCCCCCCCCCCccccEEeeeCCCcceEEEEEecCceEEEEecCCcEEEEeCCCCCCCCCCCCCC
Q 013912          141 PNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLT  220 (434)
Q Consensus       141 ~~~~~~~~vy~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~~I~~I~~G~~hs~alt~dG~Vy~wG~n~~lG~~~~~~~~  220 (434)
                              ||+||+|..||||....+....+..+..+-.-..|+.|+||.+|++||+++|++|+||.|. +|+++..+ .
T Consensus       252 --------vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~f~i~~i~~vacG~~h~~al~~~G~i~a~G~n~-fgqlg~~~-~  321 (476)
T COG5184         252 --------VYGWGSNQKGQLGRPTSERLKLVVLVGDPFAIRNIKYVACGKDHSLALDEDGEIYAWGVNI-FGQLGAGS-D  321 (476)
T ss_pred             --------EEEecCCcccccCCchhhhcccccccCChhhhhhhhhcccCcceEEEEcCCCeEEEeccch-hcccccCc-c
Confidence                    9999999999999988776666666544333345889999999999999999999999997 66554431 1


Q ss_pred             CCCCCCceeeEEeeCCCCCCCCCCCcEEEEecCceeEEEEcCCCeEEEEeCCCCCCCCCCC--CCCeeccEEecCCcchh
Q 013912          221 RNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGK--TIDFFAPAIVLWPPLTE  298 (434)
Q Consensus       221 ~~~~~~~~~P~~i~~~~~~~~~~~~i~~I~~G~~hs~~lt~dG~~vy~wG~n~~GqLG~g~--~~~~~~P~~V~~p~~~~  298 (434)
                      +........|.....     .....|..|++|..|+++|..+| .||+||++..+|||.++  +.++..|+++...   .
T Consensus       322 ~~~~a~~tk~~~~~~-----~~~~~i~~is~ge~H~l~L~~~G-~l~a~Gr~~~~qlg~~~~~~~~~~~~~~ls~~---~  392 (476)
T COG5184         322 GEIGALTTKPNYKQL-----LSGVTICSISAGESHSLILRKDG-TLYAFGRGDRGQLGIQEEITIDVSTPTKLSVA---I  392 (476)
T ss_pred             cccceeecccccccc-----CCCceEEEEecCcceEEEEecCc-eEEEecCCccccccCcccceeecCCccccccc---c
Confidence            222223333433322     22234789999999999999999 99999999999999998  4455555444211   1


Q ss_pred             hhccccccccCCCcccccccccchhhhhhhhhhHHHHHHHHhhhhhhhhhhcccccceeecccc
Q 013912          299 EFKQDELNTGGLDDEIKTKDLEGAEERDEKLSSAMEEMKLLQSKLSVMERYASILHGSIFGKPF  362 (434)
Q Consensus       299 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~hgql~~~~~  362 (434)
                      .     ..++.|.+.+..-+                     ..+.+ .++||.+.||||-.-|+
T Consensus       393 ~-----~~~v~~gt~~~~~~---------------------t~~gs-vy~wG~ge~gnlG~g~~  429 (476)
T COG5184         393 K-----LEQVACGTHHNIAR---------------------TDDGS-VYSWGWGEHGNLGNGPK  429 (476)
T ss_pred             c-----eEEEEecCccceee---------------------ccCCc-eEEecCchhhhccCCch
Confidence            1     22334443322222                     12334 44999999999986555

>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] Back     alignment and domain information
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] Back     alignment and domain information
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query434
4dnu_A372 Crystal Structure Of The W285a Mutant Of Uvb-Resist 2e-24
4dnu_A 372 Crystal Structure Of The W285a Mutant Of Uvb-Resist 5e-06
4dnv_A370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 3e-24
4dnv_A 370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 5e-06
4d9s_A406 Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv 6e-24
4d9s_A 406 Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv 9e-07
4dnw_A374 Crystal Structure Of Uvb-Resistance Protein Uvr8 Le 7e-24
4dnw_A 374 Crystal Structure Of Uvb-Resistance Protein Uvr8 Le 5e-06
3kci_A389 The Third Rld Domain Of Herc2 Length = 389 2e-17
3kci_A389 The Third Rld Domain Of Herc2 Length = 389 1e-05
1a12_A413 Regulator Of Chromosome Condensation (Rcc1) Of Huma 7e-14
1a12_A 413 Regulator Of Chromosome Condensation (Rcc1) Of Huma 1e-04
1i2m_B402 Ran-Rcc1-So4 Complex Length = 402 1e-13
1i2m_B 402 Ran-Rcc1-So4 Complex Length = 402 1e-04
3of7_A473 The Crystal Structure Of Prp20p From Saccharomyces 9e-09
3mvd_K423 Crystal Structure Of The Chromatin Factor Rcc1 In C 8e-05
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 Back     alignment and structure 
Iteration: 1

 Score =  110 bits (274), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 95/338 (28%), Positives = 141/338 (41%), Gaps = 80/338 (23%)
Query: 3   QICSVKAGGMMSLAIDNAGA---LWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTV 59
           QI SV  G   ++A   +G     W WG     D    G  +    FTP P+   HG  +
Sbjct: 59  QIVSVTCGADHTVAYSQSGXEVYSWGWG-----DFGRLGHGNSSDLFTPLPIKALHGIRI 113
Query: 60  VKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSP 119
            ++ACG  H +A+   GE          SWG N NGQLGLGD E  L P+ I+ F     
Sbjct: 114 KQIACGDSHCLAVTXEGEVQ--------SWGRNQNGQLGLGDTEDSLVPQKIQAFEGIR- 164
Query: 120 WAVYEVTCGSFHTALLTH------------------------------------------ 137
             +  V  G+ HTA +T                                           
Sbjct: 165 --IKXVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKXSXVAC 222
Query: 138 --RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSV 195
             R   +       +T+G  + GQLGHG  +  L+P +++ L    ++  +  G  HT  
Sbjct: 223 GWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSN-SFISQISGGARHTXA 281
Query: 196 VSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGA 253
           ++S G ++ WG  K   +G+  N         D  SP+ +       P  Q  VQV+CG 
Sbjct: 282 LTSDGKLYGWGWNKFGQVGVGNNL--------DQCSPVQV-----RFPDDQKVVQVSCGW 328
Query: 254 AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
            HT+ VT+    +++WGRG +G LG G+++D   P I+
Sbjct: 329 RHTLAVTERN-NVFAWGRGTNGQLGIGESVDRNFPKII 365
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 Back     alignment and structure
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 Back     alignment and structure
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 Back     alignment and structure
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 Back     alignment and structure
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 Back     alignment and structure
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 Back     alignment and structure
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 Back     alignment and structure
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human Length = 413 Back     alignment and structure
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human Length = 413 Back     alignment and structure
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex Length = 402 Back     alignment and structure
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex Length = 402 Back     alignment and structure
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces Cerevisiae And Its Binding Properties To Gsp1p And Histones Length = 473 Back     alignment and structure
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex With The Nucleosome Core Particle Length = 423 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query434
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 2e-70
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 2e-58
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 4e-57
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 2e-50
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 3e-50
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 7e-23
4d9s_A 406 UVB-resistance protein UVR8; UV resistance, UV-B p 4e-21
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 8e-70
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 2e-50
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 8e-50
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 1e-48
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 1e-42
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 2e-32
1a12_A 413 RCC1, regulator of chromosome condensation 1; guan 1e-17
1a12_A 413 RCC1, regulator of chromosome condensation 1; guan 3e-09
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 3e-06
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 2e-66
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 1e-57
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 7e-55
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 4e-49
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 5e-47
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 6e-25
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 2e-07
3of7_A473 Regulator of chromosome condensation; beta-propell 4e-65
3of7_A473 Regulator of chromosome condensation; beta-propell 1e-49
3of7_A473 Regulator of chromosome condensation; beta-propell 1e-41
3of7_A473 Regulator of chromosome condensation; beta-propell 4e-37
3of7_A 473 Regulator of chromosome condensation; beta-propell 1e-17
3of7_A473 Regulator of chromosome condensation; beta-propell 3e-06
3mvd_K423 Regulator of chromosome condensation; protein-DNA 5e-60
3mvd_K423 Regulator of chromosome condensation; protein-DNA 3e-50
3mvd_K423 Regulator of chromosome condensation; protein-DNA 5e-48
3mvd_K423 Regulator of chromosome condensation; protein-DNA 1e-44
3mvd_K423 Regulator of chromosome condensation; protein-DNA 1e-41
3mvd_K 423 Regulator of chromosome condensation; protein-DNA 4e-27
3mvd_K423 Regulator of chromosome condensation; protein-DNA 2e-22
3mvd_K423 Regulator of chromosome condensation; protein-DNA 2e-07
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 2e-25
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 3e-23
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 3e-18
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-06
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
 Score =  227 bits (580), Expect = 2e-70
 Identities = 84/293 (28%), Positives = 130/293 (44%), Gaps = 45/293 (15%)

Query: 4   ICSVKAGGMMSLAIDNAGALWMWGNCP---LPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 60
           I  +  G    LA+   G +  WG      L    TE       S  P  +  F G  + 
Sbjct: 123 IKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTE------DSLVPQKIQAFEGIRIK 176

Query: 61  KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 120
            VA G+EH  A+   G+         Y WG    G LGLGDR  RL P+ + +   +   
Sbjct: 177 MVAAGAEHTAAVTEDGD--------LYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEK-- 226

Query: 121 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 180
            +  V CG  HT  +++            +T+G  + GQLGHG  +  L+P +++ L   
Sbjct: 227 -MSMVACGWRHTISVSYSGA--------LYTYGWSKYGQLGHGDLEDHLIPHKLEALSNS 277

Query: 181 VYLVSVDCGLFHTSVVSSAGDVWSWGM-EKG-LGLCPNASLTRNEAGDAISPILISGNGP 238
             +  +  G  HT  ++S G ++ WG  + G +G+            D  SP+ +     
Sbjct: 278 F-ISQISGGWRHTMALTSDGKLYGWGWNKFGQVGV--------GNNLDQCSPVQVR---- 324

Query: 239 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 291
             P  Q  VQV+CG  HT+ VT+    +++WGRG +G LG G+++D   P I+
Sbjct: 325 -FPDDQKVVQVSCGWRHTLAVTERN-NVFAWGRGTNGQLGIGESVDRNFPKII 375
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query434
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
3mvd_K423 Regulator of chromosome condensation; protein-DNA 100.0
3of7_A473 Regulator of chromosome condensation; beta-propell 100.0
3of7_A473 Regulator of chromosome condensation; beta-propell 100.0
3mvd_K423 Regulator of chromosome condensation; protein-DNA 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 100.0
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 96.63
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 96.62
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 85.22
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
Probab=100.00  E-value=1.2e-51  Score=417.48  Aligned_cols=306  Identities=29%  Similarity=0.489  Sum_probs=252.6

Q ss_pred             CeEEEEecCCeEEEEecCC-cEEEecCCCCCCCCCCCCccccccccceeeccCCCCcEEEEEecCCeEEEEEcCCCcccC
Q 013912            3 QICSVKAGGMMSLAIDNAG-ALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKG   81 (434)
Q Consensus         3 kI~~Va~G~~h~~alt~~G-~vy~wG~n~~G~qlg~g~~~~~~~~~p~~v~~~~~~~I~~Vs~G~~hs~~lt~~G~vy~~   81 (434)
                      +|++|+||..|++||+++| +||+||.|.+| |||.+..  .....|.++..+.+.+|++|+||.+|+++|+++|+    
T Consensus        69 ~i~~va~G~~ht~al~~~gg~v~~wG~n~~G-qLG~g~~--~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~----  141 (406)
T 4d9s_A           69 QIVSVTCGADHTVAYSQSGMEVYSWGWGDFG-RLGHGNS--SDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGE----  141 (406)
T ss_dssp             CEEEEEECSSEEEEEETTTTEEEEEECCGGG-TTCSSSC--CCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSC----
T ss_pred             CEEEEEeCcceEEEEECCCCEEEEEcCCCCc-CCCCCCC--CccccceEecccCCCCEEEEEEChhheEEEcCCCc----
Confidence            7999999999999999886 99999999999 9998864  45678888888888899999999999999999996    


Q ss_pred             CCceEEEeeCCCCCcCCCCCCCCeecceeeeccCCCCCCcEEEEeecCceEEEEEccCCCCCcCCCeEEEeecCCCCCCC
Q 013912           82 EDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG  161 (434)
Q Consensus        82 ~~~~vy~wG~N~~GQLG~g~~~~~~~P~~v~~~~~~~~~~I~~Is~G~~ht~~Lt~~G~~~~~~~~~vy~wG~n~~GqLG  161 (434)
                          ||+||.|.+||||.++......|+++..+..   .+|++|+||.+|+++|+++|+        ||+||.|.+||||
T Consensus       142 ----v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~---~~i~~va~G~~hs~alt~~G~--------v~~wG~n~~GqlG  206 (406)
T 4d9s_A          142 ----VQSWGRNQNGQLGLGDTEDSLVPQKIQAFEG---IRIKMVAAGAEHTAAVTEDGD--------LYGWGWGRYGNLG  206 (406)
T ss_dssp             ----EEEEECCTTSTTCSSSCCCEEEEEECGGGTT---CCEEEEEECSSEEEEEETTSC--------EEEEECCTTSTTC
T ss_pred             ----EEEeCCCCCccCCCCCCCCcccceEecccCC---CcEEEEecCCCeEEEEeCCCC--------EEEeeCCCCCCCC
Confidence                9999999999999999999999999987654   379999999999999999999        9999999999999


Q ss_pred             CCCCCCccccEEeeeCCCcceEEEEEecCceEEEEecCCcEEEEeCCCCCCCCCCCCCCCCCCCCceeeEEeeCCCCCCC
Q 013912          162 HGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP  241 (434)
Q Consensus       162 ~g~~~~~~~p~~v~~l~~~~~I~~I~~G~~hs~alt~dG~Vy~wG~n~~lG~~~~~~~~~~~~~~~~~P~~i~~~~~~~~  241 (434)
                      ++.......|+++..+ ...+|++|+||.+|+++|+++|+||+||.|. +|++...     .......|.++..     .
T Consensus       207 ~g~~~~~~~p~~v~~~-~~~~i~~va~G~~ht~~l~~~G~v~~wG~n~-~GqlG~g-----~~~~~~~p~~v~~-----~  274 (406)
T 4d9s_A          207 LGDRTDRLVPERVTST-GGEKMSMVACGWRHTISVSYSGALYTYGWSK-YGQLGHG-----DLEDHLIPHKLEA-----L  274 (406)
T ss_dssp             SSSSCCEEEEEECCCS-TTCCEEEEEECSSEEEEEETTCCEEEEECCT-TSTTCSS-----SCCCEEEEEECGG-----G
T ss_pred             CCCCCCcCccEEeccc-CCceEEEEEECCCcEEEEcCCCCEEEeeCCC-CCCCCCC-----CCcCccccEEecc-----c
Confidence            9998888899999766 4568999999999999999999999999998 3333221     2345678888876     2


Q ss_pred             CCCCcEEEEecCceeEEEEcCCCeEEEEeCCCCCCCCCCCCCCeeccEEecCCcchhhhccccccccCCCcccccccccc
Q 013912          242 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFKQDELNTGGLDDEIKTKDLEG  321 (434)
Q Consensus       242 ~~~~i~~I~~G~~hs~~lt~dG~~vy~wG~n~~GqLG~g~~~~~~~P~~V~~p~~~~~f~~~~~~~~~~~~~~~~~~~~~  321 (434)
                      ...+|++|+||..|+++|+++| +||+||+|.+||||.++..+...|++|.+|...      .+.++.|+.         
T Consensus       275 ~~~~v~~i~~G~~hs~alt~~G-~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~------~v~~va~G~---------  338 (406)
T 4d9s_A          275 SNSFISQISGGWRHTMALTSDG-KLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQ------KVVQVSCGW---------  338 (406)
T ss_dssp             TTSCEEEEEECSSEEEEEETTS-CEEEEECCTTSTTCSSSSSCEEEEEEECCGGGC------CEEEEEECS---------
T ss_pred             CCCCEEEEEecCCEEEEEcCCC-eEEEeeCCCCCCCCCCCCCCCccCEEEeccCCC------cEEEEEeCC---------
Confidence            2346999999999999999999 999999999999999999999999999765221      222233332         


Q ss_pred             hhhhhhhhhhHHHHHHHHhhhhhhhhhhcccccceeeccccCccCCccccc
Q 013912          322 AEERDEKLSSAMEEMKLLQSKLSVMERYASILHGSIFGKPFAAEQDIPISL  372 (434)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~hgql~~~~~~~~~~~~~~l  372 (434)
                                  .+...+.++.. ++.||++.||||-.... ..+..|..+
T Consensus       339 ------------~hs~alt~~G~-v~~wG~n~~GqLG~g~~-~~~~~P~~v  375 (406)
T 4d9s_A          339 ------------RHTLAVTERNN-VFAWGRGTNGQLGIGES-VDRNFPKII  375 (406)
T ss_dssp             ------------SEEEEEETTSC-EEEEECCTTSTTCSSSC-CCEEEEEEC
T ss_pred             ------------CeEEEEeCCCC-EEEecCCCCCccCCCCC-CCCcCCEEe
Confidence                        22223344444 55999999999965433 234455443
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 434
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 3e-16
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 2e-14
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 3e-14
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 8e-14
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 5e-13
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 3e-10
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 2e-07
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 8e-11
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 8e-04
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 0.002
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.9 bits (190), Expect = 3e-16
 Identities = 63/289 (21%), Positives = 91/289 (31%), Gaps = 43/289 (14%)

Query: 24  WMWGNCPLPDSSTEG--GFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKG 81
                         G  G       +  PV       VVKVA G++H+V L + G+    
Sbjct: 117 DGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGD---- 172

Query: 82  EDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA-------------VYEVTCG 128
                Y+ G    GQLG        R           P                 +  CG
Sbjct: 173 ----LYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCG 228

Query: 129 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDC 188
           ++ T  ++H         S     G         GT    +              V    
Sbjct: 229 AYFTFAISHEGHVYGFGLSNYHQLGT-------PGTESCFIPQNLTSFKNSTKSWVGFSG 281

Query: 189 GLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQ 248
           G  HT  + S G  +S G  +   L          A +   P LIS              
Sbjct: 282 GQHHTVCMDSEGKAYSLGRAEYGRLGLG-----EGAEEKSIPTLISR-------LPAVSS 329

Query: 249 VACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLT 297
           VACGA+    VT DG ++++WG G +  LGTG+  D ++P  ++   L 
Sbjct: 330 VACGASVGYAVTKDG-RVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLE 377
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query434
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 100.0
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 100.0
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 99.97
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 99.95
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 95.85
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 90.79
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-42  Score=343.20  Aligned_cols=269  Identities=27%  Similarity=0.428  Sum_probs=220.8

Q ss_pred             CCCeEEEEecCCeEEEEecCCcEEEecCCCCCCCCCCCCccccccccceeeccCCCCcEEEEEecCCeEEEEEcCCCccc
Q 013912            1 MSQICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYK   80 (434)
Q Consensus         1 l~kI~~Va~G~~h~~alt~~G~vy~wG~n~~G~qlg~g~~~~~~~~~p~~v~~~~~~~I~~Vs~G~~hs~~lt~~G~vy~   80 (434)
                      +++|++|+||..|++||+++|+||+||.|.+| |||.+.......+.|..  .....+|++|+||.+|+++++++|++|.
T Consensus        46 ~~~i~~ia~G~~h~~al~~~G~vy~wG~n~~G-QLG~g~~~~~~~~~~~~--~~~~~~i~~i~~g~~~~~~~~~~g~v~~  122 (401)
T d1a12a_          46 PEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEG-ALGRDTSVEGSEMVPGK--VELQEKVVQVSAGDSHTAALTDDGRVFL  122 (401)
T ss_dssp             SSCEEEEEECSSEEEEEETTSCEEEEECCTTS-TTCSCCCSTTGGGSCEE--CCCCSCEEEEEECSSEEEEEETTSCEEE
T ss_pred             CCCeEEEEeCCCEEEEEeCCCEEEEEeCCCCC-CCCcccccccccccccc--cccccceeeecccccceeecccccccee
Confidence            46899999999999999999999999999999 99988655444444444  4456689999999999999999999986


Q ss_pred             C---------------------------------------------CCceEEEeeCCCCCcCCCCCCCC-----------
Q 013912           81 G---------------------------------------------EDLVCYSWGANNNGQLGLGDRES-----------  104 (434)
Q Consensus        81 ~---------------------------------------------~~~~vy~wG~N~~GQLG~g~~~~-----------  104 (434)
                      |                                             .+..+|+||.|.+||||......           
T Consensus       123 wG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~~~~~g~~~~~G~n~~gqlg~~~~~~~~~~~~~~~~~  202 (401)
T d1a12a_         123 WGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLER  202 (401)
T ss_dssp             EECEEETTEEEESSBBTBCEEEEEEECCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHH
T ss_pred             ccccccccccccccCCccccceeeeeccCCceeEEEecccceeeeecCCcccccccCCccccCCCCccccccCCcccccc
Confidence            4                                             25789999999999999874321           


Q ss_pred             eecceeeeccC--CCCCCcEEEEeecCceEEEEEccCCCCCcCCCeEEEeecCCCCCCCCCCCCCccccEEeeeCCC-cc
Q 013912          105 RLRPKIIETFN--QDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ-YV  181 (434)
Q Consensus       105 ~~~P~~v~~~~--~~~~~~I~~Is~G~~ht~~Lt~~G~~~~~~~~~vy~wG~n~~GqLG~g~~~~~~~p~~v~~l~~-~~  181 (434)
                      ...|..+....  .....+|.+|+||.+|+++|+++|+        ||+||.|.+|++|.........+..+..+.. ..
T Consensus       203 ~~~p~~~~~~~~~~~~~~~i~~v~~g~~~~~~l~~~g~--------v~~~g~n~~g~~g~~~~~~~~~~~~~~~~~~~~~  274 (401)
T d1a12a_         203 LLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGH--------VYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTK  274 (401)
T ss_dssp             HHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCC--------EEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTC
T ss_pred             ccccceeeccccCCCCCceEEEEEecCCeEEEEecCCe--------Eeeecccceecccccccccceeccccccccccce
Confidence            12344443222  1223479999999999999999999        9999999999999998888777777765543 45


Q ss_pred             eEEEEEecCceEEEEecCCcEEEEeCCC--CCCCCCCCCCCCCCCCCceeeEEeeCCCCCCCCCCCcEEEEecCceeEEE
Q 013912          182 YLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLV  259 (434)
Q Consensus       182 ~I~~I~~G~~hs~alt~dG~Vy~wG~n~--~lG~~~~~~~~~~~~~~~~~P~~i~~~~~~~~~~~~i~~I~~G~~hs~~l  259 (434)
                      .++.|++|..|+++++++|+||+||.|.  ++|.+       ........|+.++.       ..+|++|+||.+|++||
T Consensus       275 ~~~~i~~g~~~~~~l~~~g~v~~wG~n~~gqlG~g-------~~~~~~~~P~~i~~-------~~~i~~Is~G~~hs~al  340 (401)
T d1a12a_         275 SWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLG-------EGAEEKSIPTLISR-------LPAVSSVACGASVGYAV  340 (401)
T ss_dssp             CEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSC-------TTCCCEEEEEECCS-------SSSEEEEEECSSEEEEE
T ss_pred             eEEEEeeeccceeeeccCCCEEEecccccCccCCC-------cccccccCCEEcCC-------CCCeEEEEeeCCEEEEE
Confidence            6999999999999999999999999987  44442       12345567888865       45799999999999999


Q ss_pred             EcCCCeEEEEeCCCCCCCCCCCCCCeeccEEecCCc
Q 013912          260 TDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPP  295 (434)
Q Consensus       260 t~dG~~vy~wG~n~~GqLG~g~~~~~~~P~~V~~p~  295 (434)
                      +++| +||+||+|.+||||+|+..++..|++|..+.
T Consensus       341 t~dG-~v~~WG~n~~GQLG~G~~~~~~~P~~v~~~~  375 (401)
T d1a12a_         341 TKDG-RVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQ  375 (401)
T ss_dssp             ETTS-CEEEEECCTTSTTCSSSCSCEEEEEECCSTT
T ss_pred             eCCC-eEEEEecCCCCCCCCCCCCCEecCEEeeccC
Confidence            9999 9999999999999999999999999987543
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure