Citrus Sinensis ID: 013928

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430----
Protein Sequence
MATAYSSAKFVQPLSLNSTINGRSRDNSLFDPLKTGTSFLGSTRKLRVNSVHSNQGNVRRRLPVVAVSEVVKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPPRSQLLENVFADPKGFGIGPDGRYRCEDPKFTEGTAHV
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHcccccEEEEcccccHHHHcccccHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccEEEEEEccccccHHHHHHHHHHHHHHcccEEEEEEccccccccHHHHHcccHHHHHHccccccccEEEccccHHHHHHHHHHHHHHHHcccccEEEEEEcccccccccccccccccHHHHHHHHHcccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHccccccccccccccccccccccccccHccccccccccccccccccccccccccccccEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHHcccccEEEEccccHHHHHHccccHHHHHHHHHcccccccccccccEEEEcccccccccccEEcccccHHHHHHHHHHHHHHHHcccccccEEEEEEccccccccHHHHHHHHHHHHcccEEEEEEcccccccccHHHccccHHHHHHHHHccccccEEcHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEEcccccccccccccHHHHHHHHHccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHccccccccccccccccccccccccccEc
Coil and Loop (DISEMBL)
matayssakfvqplslnstingrsrdnslfdplktgtsflgstrKLRVNSVhsnqgnvrrrlpVVAVSEVVKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFgkatgccrgqggsmhmfskehnllggfafigegipvatgaaFTSKYRREVlkeadcdhvtlaffgdgtcnngqffeCLNMAALWKLPIVFVVENNLWAIGMShlratsdpqiykkgpafgmpgfhvdgmDVLKVREVAKEAIERArrgegptlvecetyrfrghsladpdelrdpaEKARYAARDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVefadesappprsqllenvfadpkgfgigpdgryrcedpkftegtahv
Flexible Loop (DISEMBL)
matayssakfvqplslnstingrsrdnslfdpLKTGTsflgstrklrvnsvhsnqgnvrrrlpvvavsevvkekkvksisnllitkqeglELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAierarrgegptlvecetyrfrghsladpdelrdPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFadesappprsqlleNVFADPKGFGIGPDGRYRCEDPKFTEGTAHV
Low Complexity Region (SEG)
MATAYSSAKFVQPLSLNSTINGRSRDNSLFDPLKTGTSFLGSTRKLRVNSVHSNQGNVRRRLPvvavsevvkekkvksISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIdevvedavefadesaPPPRSQLLENVFADPKGFGIGPDGRYRCEDPKFTEGTAHV
Disordered region (IsUnstruct)
********************************************************NVRRRLPVVAVSEVVKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERA****GPTLVECETYRFRG*********************DPITALKKYLIESSL********I***I**V****************************************************
Disordered Region (DISOPRED)
****************************************************************************************GLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPPRSQLLENVFADPKGFGIGPDGRYRCEDPKFTEG****
Disordered Region (DISEMBL)
*********FVQPLSLNSTINGRSRDNSLFDPLKTGTSFLGSTRKLRVNSVHSNQGNVRRRLPVVAVSEVVKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVE********PRSQLLENVFADPKGFGIGPDGRYRCEDPKFTEGTAHV
Disordered Region (DISPRO)
****************************************************SNQGNVRRRLPVVAVSEVVKEKK**SISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPPRSQLLENVFADPKGF*IGPDGR*RCE*P**TE*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATAYSSAKFVQPLSLNSTINGRSRDNSLFDPLKTGTSFLGSTRKLRVNSVHSNQGNVRRRLPVVAVSEVVKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAARDPITALKKYLIESSLASEAExxxxxxxxxxxxxxxxxxxxxSAPPPRSQLLENVFADPKGFGIGPDGRYRCEDPKFTEGTAHV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	434	2.2.26 [Sep-21-2011]
O24457	428	Pyruvate dehydrogenase E1	yes	no	0.981	0.995	0.809	0.0
Q7XTJ3	425	Pyruvate dehydrogenase E1	yes	no	0.808	0.825	0.866	0.0
P51267	344	Pyruvate dehydrogenase E1	N/A	no	0.774	0.976	0.660	1e-130
Q1XDM0	346	Pyruvate dehydrogenase E1	N/A	no	0.758	0.950	0.665	1e-130
Q1RJX4	326	Pyruvate dehydrogenase E1	yes	no	0.728	0.969	0.417	7e-79
Q92IS3	326	Pyruvate dehydrogenase E1	yes	no	0.725	0.966	0.413	3e-78
Q4UKQ6	326	Pyruvate dehydrogenase E1	yes	no	0.725	0.966	0.409	6e-77
Q9ZDR4	326	Pyruvate dehydrogenase E1	yes	no	0.746	0.993	0.394	2e-75
Q68XA9	326	Pyruvate dehydrogenase E1	yes	no	0.723	0.963	0.395	1e-74
Q9R9N5	348	Pyruvate dehydrogenase E1	yes	no	0.725	0.905	0.443	1e-74

>sp|O24457|ODPA3_ARATH Pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic OS=Arabidopsis thaliana GN=PDH-E1 ALPHA PE=1 SV=1

 Score =  722 bits (1864), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/436 (80%), Positives = 383/436 (87%), Gaps = 10/436 (2%)

Query: 1   MATAYSSAKFVQPLSLNSTINGRSRDNSLFDPLKTG--TSFLGSTRKLRVNSVHSNQGNV 58
           MATA++  K    + L+      S +N L  P++    +SFLGSTR L +  +  N  N 
Sbjct: 1   MATAFAPTKLTATVPLHG-----SHENRLLLPIRLAPPSSFLGSTRSLSLRRL--NHSNA 53

Query: 59  RRRLPVVAVSEVVKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGF 118
            RR PVV+V EVVKEK+  + ++LLITK+EGLELYEDMILGRSFEDMCAQMYYRGKMFGF
Sbjct: 54  TRRSPVVSVQEVVKEKQSTNNTSLLITKEEGLELYEDMILGRSFEDMCAQMYYRGKMFGF 113

Query: 119 VHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQG 178
           VHLYNGQEAVSTGFIKLL K DSVVSTYRDHVHALSKGV ARAVMSELFGK TGCCRGQG
Sbjct: 114 VHLYNGQEAVSTGFIKLLTKSDSVVSTYRDHVHALSKGVSARAVMSELFGKVTGCCRGQG 173

Query: 179 GSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNN 238
           GSMHMFSKEHN+LGGFAFIGEGIPVATGAAF+SKYRREVLK+ DCD VT+AFFGDGTCNN
Sbjct: 174 GSMHMFSKEHNMLGGFAFIGEGIPVATGAAFSSKYRREVLKQ-DCDDVTVAFFGDGTCNN 232

Query: 239 GQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDV 298
           GQFFECLNMAAL+KLPI+FVVENNLWAIGMSHLRATSDP+I+KKGPAFGMPG HVDGMDV
Sbjct: 233 GQFFECLNMAALYKLPIIFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDV 292

Query: 299 LKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAARDPITALK 358
           LKVREVAKEA+ RARRGEGPTLVECETYRFRGHSLADPDELRD AEKA+YAARDPI ALK
Sbjct: 293 LKVREVAKEAVTRARRGEGPTLVECETYRFRGHSLADPDELRDAAEKAKYAARDPIAALK 352

Query: 359 KYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPPRSQLLENVFADPKGFGIGPDG 418
           KYLIE+ LA EAELK+IEKKIDE+VE+AVEFAD S  P RSQLLENVFADPKGFGIGPDG
Sbjct: 353 KYLIENKLAKEAELKSIEKKIDELVEEAVEFADASPQPGRSQLLENVFADPKGFGIGPDG 412

Query: 419 RYRCEDPKFTEGTAHV 434
           RYRCEDPKFTEGTA V
Sbjct: 413 RYRCEDPKFTEGTAQV 428

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 2EC: .EC: 4EC: .EC: 1

>sp|Q7XTJ3|ODPA3_ORYSJ Pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic OS=Oryza sativa subsp. japonica GN=Os04g0119400 PE=2 SV=2

 Score =  649 bits (1673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 306/353 (86%), Positives = 329/353 (93%), Gaps = 2/353 (0%)

Query: 84  ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 143
           +T++E LELYEDM+LGR FEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLL + D VV
Sbjct: 73  VTREEALELYEDMVLGRIFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLNQADCVV 132

Query: 144 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 203
           STYRDHVHALSKGVPAR+VM+ELFGKATGCCRGQGGSMHMFS+ HNLLGGFAFIGEGIPV
Sbjct: 133 STYRDHVHALSKGVPARSVMAELFGKATGCCRGQGGSMHMFSEPHNLLGGFAFIGEGIPV 192

Query: 204 ATGAAFTSKYRREVLKEADCD--HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVEN 261
           ATGAAF +KYR EVLK++  D   VTLAFFGDGTCNNGQFFECLNMA LWKLPIVFVVEN
Sbjct: 193 ATGAAFAAKYRHEVLKQSSPDGLDVTLAFFGDGTCNNGQFFECLNMAQLWKLPIVFVVEN 252

Query: 262 NLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLV 321
           NLWAIGMSHLRATSDP+IYKKGPAFGMPG HVDGMDVLKVREVAKEAIERARRGEGPTLV
Sbjct: 253 NLWAIGMSHLRATSDPEIYKKGPAFGMPGVHVDGMDVLKVREVAKEAIERARRGEGPTLV 312

Query: 322 ECETYRFRGHSLADPDELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIDE 381
           ECETYRFRGHSLADPDELR P EK+ YAARDPITALKKY+IE +LA+E+ELK+IEKKID+
Sbjct: 313 ECETYRFRGHSLADPDELRRPDEKSHYAARDPITALKKYIIEQNLATESELKSIEKKIDD 372

Query: 382 VVEDAVEFADESAPPPRSQLLENVFADPKGFGIGPDGRYRCEDPKFTEGTAHV 434
           VVE+AVEFAD S  PPRSQLLENVF+DPKGFGIGPDG+YRCEDP FT+GTA V
Sbjct: 373 VVEEAVEFADASPLPPRSQLLENVFSDPKGFGIGPDGKYRCEDPLFTQGTAQV 425

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: 1

>sp|P51267|ODPA_PORPU Pyruvate dehydrogenase E1 component subunit alpha OS=Porphyra purpurea GN=pdhA PE=3 SV=1

 Score =  465 bits (1197), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 222/336 (66%), Positives = 266/336 (79%)

Query: 73  EKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGF 132
           E  + + + + +TK + L LYEDM+LGR+FEDMCAQMYY+GKMFGFVHLYNGQEAVSTG 
Sbjct: 8   ELPLTNCNQINLTKHKLLVLYEDMLLGRNFEDMCAQMYYKGKMFGFVHLYNGQEAVSTGV 67

Query: 133 IKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLG 192
           IKLL  +D V STYRDHVHALSKGVP++ VM+ELFGK TGC RG+GGSMH+FS  HN LG
Sbjct: 68  IKLLDSKDYVCSTYRDHVHALSKGVPSQNVMAELFGKETGCSRGRGGSMHIFSAPHNFLG 127

Query: 193 GFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWK 252
           GFAFI EGIPVATGAAF S YR++VLKE     VT  FFGDGT NNGQFFECLNMA LWK
Sbjct: 128 GFAFIAEGIPVATGAAFQSIYRQQVLKEPGELRVTACFFGDGTTNNGQFFECLNMAVLWK 187

Query: 253 LPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERA 312
           LPI+FVVENN WAIGM+H R++S P+I+KK  AFG+PG  VDGMDVL VR+VA++A+ERA
Sbjct: 188 LPIIFVVENNQWAIGMAHHRSSSIPEIHKKAEAFGLPGIEVDGMDVLAVRQVAEKAVERA 247

Query: 313 RRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAARDPITALKKYLIESSLASEAEL 372
           R+G+GPTL+E  TYRFRGHSLADPDELR   EK  + ARDPI  LKK+++++ +AS  EL
Sbjct: 248 RQGQGPTLIEALTYRFRGHSLADPDELRSRQEKEAWVARDPIKKLKKHILDNQIASSDEL 307

Query: 373 KAIEKKIDEVVEDAVEFADESAPPPRSQLLENVFAD 408
             I+  +   +E +VEFA  S  P  S+L   +FAD
Sbjct: 308 NDIQSSVKIDLEQSVEFAMSSPEPNISELKRYLFAD 343

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Porphyra purpurea (taxid: 2787)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: 1

>sp|Q1XDM0|ODPA_PORYE Pyruvate dehydrogenase E1 component subunit alpha OS=Porphyra yezoensis GN=pdhA PE=3 SV=1

 Score =  465 bits (1197), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 219/329 (66%), Positives = 260/329 (79%)

Query: 80  SNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKE 139
           + L + K   L LYEDM+LGR+FEDMCAQMYY+GKMFGFVHLYNGQEAVSTG IKLL   
Sbjct: 17  TGLNLNKSNLLVLYEDMLLGRNFEDMCAQMYYKGKMFGFVHLYNGQEAVSTGVIKLLNPT 76

Query: 140 DSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGE 199
           D V STYRDHVHALSKGVP++ VM+ELFGK TGC +G+GGSMH+FS  HN LGGFAFI E
Sbjct: 77  DYVCSTYRDHVHALSKGVPSKNVMAELFGKETGCSKGRGGSMHIFSAPHNFLGGFAFIAE 136

Query: 200 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVV 259
           GIPVATGAAF S YR++VLKE +   VT  FFGDGT NNGQFFECLNMA LWKLPI+FVV
Sbjct: 137 GIPVATGAAFQSIYRQQVLKETEDLRVTACFFGDGTTNNGQFFECLNMAVLWKLPIIFVV 196

Query: 260 ENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPT 319
           ENN WAIGM+H R++S P+I+KK  AFG+PG  VDGMDVL VR+ AK+A++RAR+G+GPT
Sbjct: 197 ENNQWAIGMAHHRSSSIPEIHKKAEAFGLPGIEVDGMDVLAVRQAAKQAVQRARQGDGPT 256

Query: 320 LVECETYRFRGHSLADPDELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKI 379
           L+E  TYRFRGHSLADPDELR   EK  + ARDPI  LKKY++++ +A+  EL  I+  +
Sbjct: 257 LIEALTYRFRGHSLADPDELRSRQEKEAWVARDPIKKLKKYILDNEIANIGELNEIQNAV 316

Query: 380 DEVVEDAVEFADESAPPPRSQLLENVFAD 408
              +E AV+FA  S  P  S+L   +FAD
Sbjct: 317 KTELEQAVKFAISSPEPNMSELKRYLFAD 345

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Porphyra yezoensis (taxid: 2788)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: 1

>sp|Q1RJX4|ODPA_RICBR Pyruvate dehydrogenase E1 component subunit alpha OS=Rickettsia bellii (strain RML369-C) GN=pdhA PE=3 SV=1

 Score =  294 bits (753), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 135/323 (41%), Positives = 208/323 (64%), Gaps = 7/323 (2%)

Query: 85  TKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVS 144
            K+E ++ ++DM+L R FE+ C Q+Y  G++ GF HLY GQEAV +    + +KEDS+V+
Sbjct: 11  VKEEYIKSFKDMLLLRRFEEKCGQLYGMGEIGGFCHLYIGQEAVISAVDMVKQKEDSMVT 70

Query: 145 TYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVA 204
           +YRDH H +  G   + V++EL G+ATGC +G+GGSMH+F   +   GG   +G  +P+ 
Sbjct: 71  SYRDHAHIILAGTEPKYVLAELMGRATGCSKGKGGSMHLFDVPNKFYGGHGIVGAQVPIG 130

Query: 205 TGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLW 264
           TG AF  KY          +++   F GDG  N GQ +E  NMAALW LP+V+++ENN +
Sbjct: 131 TGLAFAEKYN-------GTNNICFTFLGDGAVNQGQVYEAFNMAALWGLPVVYIIENNEY 183

Query: 265 AIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECE 324
           ++G S  R+T    +YKKG +FG+ GF ++GMD  ++ +  K+A E  R    P ++E +
Sbjct: 184 SMGTSVARSTFMRDLYKKGESFGIKGFQLNGMDFEEMYDGVKQAAEYVRENSMPLILEVK 243

Query: 325 TYRFRGHSLADPDELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIDEVVE 384
           TYR+RGHS++DP + R   E   Y  RDPIT ++K ++E++ ASEA+LK IE+ + E+V+
Sbjct: 244 TYRYRGHSMSDPAKYRSKEEVETYKERDPITEIRKIILENNYASEADLKEIEQSVKEIVK 303

Query: 385 DAVEFADESAPPPRSQLLENVFA 407
           +AVEF++ S  P   +L   ++ 
Sbjct: 304 EAVEFSENSPLPNEEELYTQIYV 326

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Rickettsia bellii (strain RML369-C) (taxid: 336407)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: 1

>sp|Q92IS3|ODPA_RICCN Pyruvate dehydrogenase E1 component subunit alpha OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=pdhA PE=3 SV=1

 Score =  293 bits (749), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 133/322 (41%), Positives = 208/322 (64%), Gaps = 7/322 (2%)

Query: 85  TKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVS 144
           TK+E ++ ++DM+L R FE+ C Q+Y  G++ GF HLY GQEAV +    + +K DS ++
Sbjct: 11  TKEEYIKSFKDMLLLRRFEEKCGQLYGMGEIGGFCHLYIGQEAVISAIDMVKQKGDSTIT 70

Query: 145 TYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVA 204
           +YRDH H +  G   + V++EL G+ATGC +G+GGSMH+F+  +   GG   +G  +P+ 
Sbjct: 71  SYRDHAHIILAGTEPKYVLAELMGRATGCSKGKGGSMHLFNVPNKFYGGHGIVGAQVPIG 130

Query: 205 TGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLW 264
           TG AF  KY        D  ++   F GDG  N GQ +E  NMAALW LP+V+++ENN +
Sbjct: 131 TGLAFVEKYN-------DTHNICFTFLGDGAVNQGQVYEAFNMAALWGLPVVYIIENNEY 183

Query: 265 AIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECE 324
           ++G S  R+T    +YKKG +FG+ GF +DGMD  ++ + +K+A E  R    P ++E +
Sbjct: 184 SMGTSVARSTFMRDLYKKGASFGIKGFQLDGMDFEEMYDGSKQAAEYVRENSFPLILEVK 243

Query: 325 TYRFRGHSLADPDELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIDEVVE 384
           TYR+RGHS++DP + R   E  +Y  RDP+  ++K ++++   +EA+LKAIE+ + E+V+
Sbjct: 244 TYRYRGHSMSDPAKYRSKEEVEQYKERDPLVIIRKTILDNKYVTEADLKAIEQSVKEIVK 303

Query: 385 DAVEFADESAPPPRSQLLENVF 406
           +AVEF++ S  P   +L   V+
Sbjct: 304 EAVEFSENSPLPDEGELYTQVY 325

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Rickettsia conorii (strain ATCC VR-613 / Malish 7) (taxid: 272944)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: 1

>sp|Q4UKQ6|ODPA_RICFE Pyruvate dehydrogenase E1 component subunit alpha OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=pdhA PE=3 SV=1

 Score =  288 bits (737), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 132/322 (40%), Positives = 206/322 (63%), Gaps = 7/322 (2%)

Query: 85  TKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVS 144
           TK+E ++ ++DM+L R FE+ C Q+Y  G++ GF HLY GQEAV +    + +K DS ++
Sbjct: 11  TKEEYIKSFKDMLLLRRFEEKCGQLYGMGEIGGFCHLYIGQEAVISAVDTVKQKGDSTIT 70

Query: 145 TYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVA 204
           +YRDH H +  G   + V++EL G+ATGC +G+GGSMH+F   +   GG   +G  +P+ 
Sbjct: 71  SYRDHAHIILAGTEPKYVLAELMGRATGCSKGKGGSMHLFDIPNKFYGGHGIVGAQVPIG 130

Query: 205 TGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLW 264
           TG AF  KY          +++   F GDG  N GQ +E  NMAALW LP+V+++ENN +
Sbjct: 131 TGLAFAEKYN-------GTNNICFTFLGDGAVNQGQVYEAFNMAALWGLPVVYIIENNEY 183

Query: 265 AIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECE 324
           ++G S  R+T    +YKKG +FG+ GF +DGMD  ++   AK+A E  R    P ++E +
Sbjct: 184 SMGTSVARSTFMRDLYKKGESFGIKGFQLDGMDFEEMYNGAKQAAEYVRENSFPLILEVK 243

Query: 325 TYRFRGHSLADPDELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIDEVVE 384
           TYR+RGHS++DP + R   E  +Y  RDP+  ++K ++++  A+EA+LK IE+ + E+V+
Sbjct: 244 TYRYRGHSMSDPAKYRSKEEVEQYKERDPLVIIRKTILDNKYATEADLKEIEQSVKEIVK 303

Query: 385 DAVEFADESAPPPRSQLLENVF 406
           +AV+F++ S  P   +L   V+
Sbjct: 304 EAVKFSENSPLPDEGELYTEVY 325

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) (taxid: 315456)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: 1

>sp|Q9ZDR4|ODPA_RICPR Pyruvate dehydrogenase E1 component subunit alpha OS=Rickettsia prowazekii (strain Madrid E) GN=pdhA PE=3 SV=1

 Score =  283 bits (723), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 133/337 (39%), Positives = 208/337 (61%), Gaps = 13/337 (3%)

Query: 71  VKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVST 130
           +K +K K I      K+E ++ ++DM+L R FE+ C Q+Y  GK+ GF HLY GQEAV +
Sbjct: 3   IKPEKYKPI------KEEYIKSFKDMLLLRRFEEKCGQLYGMGKIGGFCHLYIGQEAVIS 56

Query: 131 GFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNL 190
               + KK DS +++YRDH H +  G   + V++EL G+ATGC +G+GGSMH+F   +  
Sbjct: 57  AVAMIKKKGDSTITSYRDHAHIILAGTEPKYVLAELMGRATGCSKGKGGSMHLFDIPNKF 116

Query: 191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAAL 250
            GG   +G  +P+ TG AF  KY          +++   F GDG  N GQ +E  NMA+L
Sbjct: 117 YGGHGIVGAQVPIGTGLAFAEKYN-------GTNNICFTFLGDGAVNQGQVYEAFNMASL 169

Query: 251 WKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIE 310
           W LPIV+++ENN +++G S  R+T    +YKKG +FG+ GF +DGMD  ++    K+  E
Sbjct: 170 WGLPIVYIIENNEYSMGTSVARSTFMCDLYKKGESFGIRGFQLDGMDFEEMYNGTKQVAE 229

Query: 311 RARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAARDPITALKKYLIESSLASEA 370
             R    P ++E +TYR+RGHS++DP + R   E  +Y  RD +  +++ ++++  A+EA
Sbjct: 230 YVRENSFPVILEVKTYRYRGHSMSDPAKYRSKEEVEKYKERDTLVRIREIILDNKYATEA 289

Query: 371 ELKAIEKKIDEVVEDAVEFADESAPPPRSQLLENVFA 407
           +LKAIE+ + E+++ AVEF++ S  P   +L   ++ 
Sbjct: 290 DLKAIEQSVREIIKVAVEFSENSPLPAEDELYTEIYV 326

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Rickettsia prowazekii (strain Madrid E) (taxid: 272947)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: 1

>sp|Q68XA9|ODPA_RICTY Pyruvate dehydrogenase E1 component subunit alpha OS=Rickettsia typhi (strain ATCC VR-144 / Wilmington) GN=pdhA PE=3 SV=1

 Score =  280 bits (717), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 127/321 (39%), Positives = 202/321 (62%), Gaps = 7/321 (2%)

Query: 87  QEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTY 146
           +E ++ ++DM+L R FE+ C Q+Y  G++ GF HLY GQEAV +    + KK DS +++Y
Sbjct: 13  EEYIKSFKDMLLLRRFEEKCGQLYGMGEIGGFCHLYIGQEAVISAVELIKKKGDSTITSY 72

Query: 147 RDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATG 206
           RDH H +  G   + V++EL G+ATGC +G+GGSMH+F   +   GG   +G  +P+ TG
Sbjct: 73  RDHAHIILAGTEPKYVLAELMGRATGCSKGKGGSMHLFDIPNKFYGGHGIVGAQVPIGTG 132

Query: 207 AAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAI 266
            AF  KY          +++   F GDG  N GQ +E  NMA+LW LP+V+++ENN +++
Sbjct: 133 LAFAEKYN-------GTNNICFTFLGDGAVNQGQVYEAFNMASLWGLPVVYIIENNEYSM 185

Query: 267 GMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETY 326
           G S  R+T    +YKKG +FG+ GF +DGMD  ++    K+  E  R    P ++E +TY
Sbjct: 186 GTSVSRSTFMRDLYKKGESFGIRGFQLDGMDFEEMYNGTKQVAEYVRENSFPVILEVKTY 245

Query: 327 RFRGHSLADPDELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIDEVVEDA 386
           R+RGHS++DP + R   E A+Y  RD +  +++ ++++  A+E +LKAIE+ + EV++ A
Sbjct: 246 RYRGHSMSDPAKYRSKEEVAKYKERDTLVRIRQIILDNKYATEEDLKAIERSVQEVIKVA 305

Query: 387 VEFADESAPPPRSQLLENVFA 407
           VEF++ S  P   +L  +++ 
Sbjct: 306 VEFSENSPLPSEDELYTDIYV 326

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Rickettsia typhi (strain ATCC VR-144 / Wilmington) (taxid: 257363)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: 1

>sp|Q9R9N5|ODPA_RHIME Pyruvate dehydrogenase E1 component subunit alpha OS=Rhizobium meliloti (strain 1021) GN=pdhA PE=3 SV=1

 Score =  280 bits (717), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 144/325 (44%), Positives = 209/325 (64%), Gaps = 10/325 (3%)

Query: 84  ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 143
            +K++ L+ Y +M+L R FE+   Q+Y  G + GF HLY GQEAV  G    LK+ D V+
Sbjct: 31  FSKEDDLKAYREMLLIRRFEEKAGQLYGMGFIGGFCHLYIGQEAVVVGMQLALKEGDQVI 90

Query: 144 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 203
           + YRDH H L+ G+ AR VM+EL G+  G  +G+GGSMHMFSKE +  GG   +G  + +
Sbjct: 91  TGYRDHGHMLACGMSARGVMAELTGRRGGLSKGKGGSMHMFSKEKHFYGGHGIVGAQVSL 150

Query: 204 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 263
            TG AF ++YR         D+V+LA+FGDG  N GQ +E  NMAALWKLP++++VENN 
Sbjct: 151 GTGLAFANRYRGN-------DNVSLAYFGDGAANQGQVYESFNMAALWKLPVIYIVENNR 203

Query: 264 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323
           +A+G S  RA++     ++G +FG+PG+ VDGMDV  V+  A EA+E  R G+GP ++E 
Sbjct: 204 YAMGTSVSRASAQTDFSQRGASFGIPGYQVDGMDVRAVKAAADEAVEHCRSGKGPIILEM 263

Query: 324 ETYRFRGHSLADPDELR--DPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIDE 381
            TYR+RGHS++DP + R  D  +K R +  DPI  +K  L +   A+E ELK I+K++ +
Sbjct: 264 LTYRYRGHSMSDPAKYRSKDEVQKMR-SEHDPIEQVKARLTDKGWATEDELKQIDKEVRD 322

Query: 382 VVEDAVEFADESAPPPRSQLLENVF 406
           +V D+ +FA     P  S+L  ++ 
Sbjct: 323 IVADSADFAQSDPEPDVSELYTDIL 347

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Rhizobium meliloti (strain 1021) (taxid: 266834)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	434
255548035	433	pyruvate dehydrogenase, putative [Ricinu	0.995	0.997	0.862	0.0
118486324	442	unknown [Populus trichocarpa]	0.997	0.979	0.863	0.0
225453620	433	PREDICTED: pyruvate dehydrogenase E1 com	0.988	0.990	0.840	0.0
449445539	428	PREDICTED: pyruvate dehydrogenase E1 com	0.972	0.985	0.832	0.0
356573267	427	PREDICTED: pyruvate dehydrogenase E1 com	0.979	0.995	0.824	0.0
356504193	418	PREDICTED: pyruvate dehydrogenase E1 com	0.958	0.995	0.824	0.0
15223294	428	pyruvate dehydrogenase E1 component subu	0.981	0.995	0.809	0.0
297843008	432	PDH-E1 alpha [Arabidopsis lyrata subsp.	0.983	0.988	0.808	0.0
356520231	432	PREDICTED: pyruvate dehydrogenase E1 com	0.976	0.981	0.812	0.0
193290722	431	putative pyruvate dehydrogenase E1 alpha	0.983	0.990	0.815	0.0

>gi|255548035|ref|XP_002515074.1| pyruvate dehydrogenase, putative [Ricinus communis] gi|223545554|gb|EEF47058.1| pyruvate dehydrogenase, putative [Ricinus communis]

 Score =  776 bits (2003), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/435 (86%), Positives = 402/435 (92%), Gaps = 3/435 (0%)

Query: 1   MATAYSSAKFVQPLSLNSTINGRSRDNSLFDPLKTGTSFLGSTRKLRVNSVHS-NQGNVR 59
           MATA+S+   +QPL +++T    ++   LFDPLKT +SF+GST KLR +++   N  +  
Sbjct: 1   MATAFSATHLIQPLPVDNT-RSYNKHQPLFDPLKTTSSFIGSTSKLRFSALPKLNHVSSF 59

Query: 60  RRLPVVAVSEVVKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFV 119
           RR  +VAVSE VKEKK+KS SNLLITK+EGL LYEDM+LGR+FEDMCAQMYYRGKMFGFV
Sbjct: 60  RRSAIVAVSEAVKEKKLKSTSNLLITKEEGLVLYEDMVLGRAFEDMCAQMYYRGKMFGFV 119

Query: 120 HLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGG 179
           HLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGK TGCCRGQGG
Sbjct: 120 HLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKTTGCCRGQGG 179

Query: 180 SMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNG 239
           SMHMFSK+HN+LGGFAFIGEGIPVATGAAFTSKYRREVLKE DCDHVTLAFFGDGTCNNG
Sbjct: 180 SMHMFSKDHNVLGGFAFIGEGIPVATGAAFTSKYRREVLKE-DCDHVTLAFFGDGTCNNG 238

Query: 240 QFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVL 299
           QFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQI+KKGPAFGMPG HVDGMDVL
Sbjct: 239 QFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIWKKGPAFGMPGVHVDGMDVL 298

Query: 300 KVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAARDPITALKK 359
           KVREVAKEAI RARRGEGPTLVECETYRFRGHSLADPDELRDPAEKA YAARDPIT+LKK
Sbjct: 299 KVREVAKEAIGRARRGEGPTLVECETYRFRGHSLADPDELRDPAEKAHYAARDPITSLKK 358

Query: 360 YLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPPRSQLLENVFADPKGFGIGPDGR 419
           Y+IE+SLASEAELKAIEKKIDEVVED+VEFADES  PPRSQLLENVFADPKGFGIGPDGR
Sbjct: 359 YIIENSLASEAELKAIEKKIDEVVEDSVEFADESPVPPRSQLLENVFADPKGFGIGPDGR 418

Query: 420 YRCEDPKFTEGTAHV 434
           YRCEDPKFT+GTAHV
Sbjct: 419 YRCEDPKFTQGTAHV 433

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118486324|gb|ABK95003.1| unknown [Populus trichocarpa]

 Score =  769 bits (1986), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/439 (86%), Positives = 404/439 (92%), Gaps = 6/439 (1%)

Query: 2   ATAYSSAKFVQPLSLNSTIN-GRSRDNSLFDPLKTG---TSFLGSTRKLRVNSVHSNQ-- 55
           A+A+S+ KF QP SLN T +    +  S FDPL+T    +SFLGSTRKLR++S   ++  
Sbjct: 4   ASAFSATKFTQPFSLNGTTSRSHEKHQSFFDPLRTAPSSSSFLGSTRKLRLSSASKSKLV 63

Query: 56  GNVRRRLPVVAVSEVVKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKM 115
            N  RR  VVAVS+VVKEKKVKS +NLLITK+EGLE+YEDMILGR+FEDMCAQMYYRGKM
Sbjct: 64  ANPNRRSAVVAVSDVVKEKKVKSTTNLLITKEEGLEVYEDMILGRAFEDMCAQMYYRGKM 123

Query: 116 FGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCR 175
           FGFVHLYNGQEAVSTGFIKLLK+EDSVVSTYRDHVHALSKGVPARAVMSELFGK TGCCR
Sbjct: 124 FGFVHLYNGQEAVSTGFIKLLKREDSVVSTYRDHVHALSKGVPARAVMSELFGKTTGCCR 183

Query: 176 GQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGT 235
           GQGGSMHMFSKEHNL+GGFAFIGEGIPVATGAAF+SKYRREVLKEADCDHVTLAFFGDGT
Sbjct: 184 GQGGSMHMFSKEHNLIGGFAFIGEGIPVATGAAFSSKYRREVLKEADCDHVTLAFFGDGT 243

Query: 236 CNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDG 295
           CNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH+RATSDP+I+KKGPAFGMPG HVDG
Sbjct: 244 CNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHVRATSDPEIWKKGPAFGMPGVHVDG 303

Query: 296 MDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAARDPIT 355
           MDVLKVREVAKEAI RARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAARDPI 
Sbjct: 304 MDVLKVREVAKEAIGRARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAARDPIA 363

Query: 356 ALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPPRSQLLENVFADPKGFGIG 415
           ALKKY+IE+SLASEAELKAIEKKIDEVVE+AVEFADES  P RSQLLENVFADPKGFGIG
Sbjct: 364 ALKKYMIENSLASEAELKAIEKKIDEVVEEAVEFADESPHPSRSQLLENVFADPKGFGIG 423

Query: 416 PDGRYRCEDPKFTEGTAHV 434
           PDGRYRCEDPKFTEGTA V
Sbjct: 424 PDGRYRCEDPKFTEGTARV 442

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453620|ref|XP_002267676.1| PREDICTED: pyruvate dehydrogenase E1 component subunit alpha [Vitis vinifera] gi|296089009|emb|CBI38712.3| unnamed protein product [Vitis vinifera]

 Score =  754 bits (1946), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/438 (84%), Positives = 396/438 (90%), Gaps = 9/438 (2%)

Query: 1   MATAYSSAKFVQPLSLNSTINGRSRDNSLFDPLKTGTSFLGSTRKLRVNSVHS-NQGNVR 59
           MA+++ S+  +QPL L S      +  +LFD LKT ++FLGST KLR  S+   N  N  
Sbjct: 1   MASSFLSSGIIQPLPLRSP----DKPQTLFDHLKTTSTFLGSTSKLRSVSLSKPNLPNPH 56

Query: 60  RRLPVVAVSEVVKEKKVKSI---SNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMF 116
           RR  VVAVS+V+KEKK KS    S LLIT++EGLELYEDM+LGR+FEDMCAQMYYRGKMF
Sbjct: 57  RRSTVVAVSDVLKEKKTKSAASSSQLLITREEGLELYEDMVLGRAFEDMCAQMYYRGKMF 116

Query: 117 GFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRG 176
           GFVHLYNGQEAVSTGFIKLLKKED VVSTYRDHVHALSKGVPARAVMSELFGKATGCCRG
Sbjct: 117 GFVHLYNGQEAVSTGFIKLLKKEDCVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRG 176

Query: 177 QGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTC 236
           QGGSMHMFSKEHN+LGGFAFIGEGIPVATGAAFTSKY+REVLKE DCD VTLAFFGDGTC
Sbjct: 177 QGGSMHMFSKEHNVLGGFAFIGEGIPVATGAAFTSKYKREVLKE-DCDEVTLAFFGDGTC 235

Query: 237 NNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGM 296
           NNGQFFECLNMA+LWKLPIVFVVENNLWAIGMSHLRATSDP+I+KKGPAFGMPGFHVDGM
Sbjct: 236 NNGQFFECLNMASLWKLPIVFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGFHVDGM 295

Query: 297 DVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAARDPITA 356
           DVLKVREVAKEAI+RARRGEGPTLVECETYRFRGHSLADPDELRDPAEKA YAARDP+TA
Sbjct: 296 DVLKVREVAKEAIQRARRGEGPTLVECETYRFRGHSLADPDELRDPAEKAHYAARDPLTA 355

Query: 357 LKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPPRSQLLENVFADPKGFGIGP 416
           LKKY+ ++ LASEAELKAIEKKIDEVVE++VEFAD S PPPRSQLLENVFADPKGFGIGP
Sbjct: 356 LKKYIFDNKLASEAELKAIEKKIDEVVEESVEFADASPPPPRSQLLENVFADPKGFGIGP 415

Query: 417 DGRYRCEDPKFTEGTAHV 434
           DG YRCEDPKFTEGTAHV
Sbjct: 416 DGSYRCEDPKFTEGTAHV 433

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445539|ref|XP_004140530.1| PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-like [Cucumis sativus]

 Score =  730 bits (1885), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/431 (83%), Positives = 386/431 (89%), Gaps = 9/431 (2%)

Query: 6   SSAKFVQPLSLNSTINGRSRDNSL-FDPLKTGTSFLGSTRKLRVNSVHSNQGNVR-RRLP 63
           SS K +QPL LNST   RS D  L FDP ++ + FLGS  + R+ S+  ++ N R R  P
Sbjct: 5   SSLKILQPLPLNST---RSNDKPLLFDPFRSTSKFLGS--RFRLPSL--SKSNTRCRSSP 57

Query: 64  VVAVSEVVKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYN 123
           VVAVS+VVKEKK+K  SNLLITK+EGL LYEDMILGR FEDMCAQMYYRGKMFGFVHLYN
Sbjct: 58  VVAVSDVVKEKKLKPSSNLLITKEEGLVLYEDMILGREFEDMCAQMYYRGKMFGFVHLYN 117

Query: 124 GQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHM 183
           GQEAVSTGFIKLL + D+VVSTYRDHVHALSKGVP+R VMSELFGK TGCCRGQGGSMHM
Sbjct: 118 GQEAVSTGFIKLLTQRDTVVSTYRDHVHALSKGVPSREVMSELFGKTTGCCRGQGGSMHM 177

Query: 184 FSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFE 243
           FSKEHNL+GGFAFIGEGIPVATGAAFTSKY+REVLKEADC  VTLAFFGDGTCNNGQFFE
Sbjct: 178 FSKEHNLIGGFAFIGEGIPVATGAAFTSKYKREVLKEADCQDVTLAFFGDGTCNNGQFFE 237

Query: 244 CLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 303
           CLNMAALWKLPIVFVVENNLWAIGMSHLRATSDP+I+KKGPAFGMPG HVDGMDVLKVRE
Sbjct: 238 CLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVRE 297

Query: 304 VAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAARDPITALKKYLIE 363
           VAKEAI RARRGEGPTLVECETYRFRGHSLADPDELRDP EKARYAARDPI ALKKY++E
Sbjct: 298 VAKEAIGRARRGEGPTLVECETYRFRGHSLADPDELRDPDEKARYAARDPIAALKKYMLE 357

Query: 364 SSLASEAELKAIEKKIDEVVEDAVEFADESAPPPRSQLLENVFADPKGFGIGPDGRYRCE 423
           + LA+E ELKAI+ KI EVVE+AV+FADES  P RSQLLENVFADPKGFGIGPDG+YRCE
Sbjct: 358 NKLANEQELKAIKDKIVEVVEEAVQFADESPHPARSQLLENVFADPKGFGIGPDGKYRCE 417

Query: 424 DPKFTEGTAHV 434
           DPKFTEGTAHV
Sbjct: 418 DPKFTEGTAHV 428

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356573267|ref|XP_003554784.1| PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-like [Glycine max]

 Score =  725 bits (1872), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/432 (82%), Positives = 379/432 (87%), Gaps = 7/432 (1%)

Query: 4   AYSSAKFVQPLSLNSTINGRSRDNSLFDPLKTGTSFLGSTRKLR-VNSVHSNQGNVRRRL 62
           + S  K  +PL L+      S   SL     T T FLGST KLR ++ +  N    R   
Sbjct: 2   SLSVPKLARPLPLHH----HSSYGSLTMSFHTFTPFLGSTHKLRFISPIKLNAP--RFNS 55

Query: 63  PVVAVSEVVKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLY 122
            VV+VS++ K  K KS +NLLITK+EGL+LYEDM+LGRSFEDMCAQMYYRGKMFGFVHLY
Sbjct: 56  SVVSVSDLFKNNKPKSTTNLLITKEEGLQLYEDMVLGRSFEDMCAQMYYRGKMFGFVHLY 115

Query: 123 NGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMH 182
           NGQEAVSTGFI  LKKED VVSTYRDHVHALSKGVPARAVMSELFGKATGC RGQGGSMH
Sbjct: 116 NGQEAVSTGFINFLKKEDCVVSTYRDHVHALSKGVPARAVMSELFGKATGCSRGQGGSMH 175

Query: 183 MFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFF 242
           MFSKEHNL+GGFAFI EGIPVATGAAF+SKYRREVLKEADCDHVTLAFFGDGTCNNGQF+
Sbjct: 176 MFSKEHNLIGGFAFIAEGIPVATGAAFSSKYRREVLKEADCDHVTLAFFGDGTCNNGQFY 235

Query: 243 ECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVR 302
           ECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQI+KKGPAFGMPG HVDGMDVLKVR
Sbjct: 236 ECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIWKKGPAFGMPGVHVDGMDVLKVR 295

Query: 303 EVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAARDPITALKKYLI 362
           EVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKA YA RDPI+ALKKY+I
Sbjct: 296 EVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKAHYAGRDPISALKKYMI 355

Query: 363 ESSLASEAELKAIEKKIDEVVEDAVEFADESAPPPRSQLLENVFADPKGFGIGPDGRYRC 422
           E+ LASE ELK I+KKI+EVVEDAVEFADES  PPRSQLLENVFADPKGFGIGPDG+YRC
Sbjct: 356 ENKLASEQELKTIDKKIEEVVEDAVEFADESPHPPRSQLLENVFADPKGFGIGPDGKYRC 415

Query: 423 EDPKFTEGTAHV 434
           EDPKFTEGTAHV
Sbjct: 416 EDPKFTEGTAHV 427

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504193|ref|XP_003520883.1| PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-like [Glycine max]

 Score =  725 bits (1871), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/432 (82%), Positives = 376/432 (87%), Gaps = 16/432 (3%)

Query: 4   AYSSAKFVQPLSLNSTINGRSRDNSLFDPLKTGTSFLGSTRKLR-VNSVHSNQGNVRRRL 62
           + S  K VQPL L        R NS        T FLGST K R ++ +  N    R   
Sbjct: 2   SLSVPKLVQPLPLQ-----HHRSNS--------TLFLGSTHKFRFISPIKLNAP--RSNS 46

Query: 63  PVVAVSEVVKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLY 122
            VV+VS +VK  K KS +NLLITK EGL+LYEDM+LGRSFEDMCAQMYYRGKMFGFVHLY
Sbjct: 47  TVVSVSNLVKNNKPKSTTNLLITKGEGLQLYEDMVLGRSFEDMCAQMYYRGKMFGFVHLY 106

Query: 123 NGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMH 182
           NGQEAVSTGFI  LKKED VVSTYRDHVHALSKGVPARAVMSELFGKATGC RGQGGSMH
Sbjct: 107 NGQEAVSTGFINFLKKEDCVVSTYRDHVHALSKGVPARAVMSELFGKATGCSRGQGGSMH 166

Query: 183 MFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFF 242
           MFSKEHNL+GGFAFI EGIPVATGAAF+SKYRREVLKEADCDHVTLAFFGDGTCNNGQF+
Sbjct: 167 MFSKEHNLIGGFAFIAEGIPVATGAAFSSKYRREVLKEADCDHVTLAFFGDGTCNNGQFY 226

Query: 243 ECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVR 302
           ECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQI+KKGPAFGMPG HVDGMDVLKVR
Sbjct: 227 ECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIWKKGPAFGMPGVHVDGMDVLKVR 286

Query: 303 EVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAARDPITALKKYLI 362
           EVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKA YA RDPI+ALKKY+I
Sbjct: 287 EVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKAHYAGRDPISALKKYMI 346

Query: 363 ESSLASEAELKAIEKKIDEVVEDAVEFADESAPPPRSQLLENVFADPKGFGIGPDGRYRC 422
           E+ LASE ELK IEKKI+E+VEDAVEFADES  PPRSQLLENVFADPKGFGIGPDG+YRC
Sbjct: 347 ENKLASEQELKTIEKKIEEIVEDAVEFADESPHPPRSQLLENVFADPKGFGIGPDGKYRC 406

Query: 423 EDPKFTEGTAHV 434
           EDPKFT+GTAHV
Sbjct: 407 EDPKFTQGTAHV 418

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15223294|ref|NP_171617.1| pyruvate dehydrogenase E1 component subunit alpha [Arabidopsis thaliana] gi|2454182|gb|AAB86803.1| pyruvate dehydrogenase E1 alpha subunit [Arabidopsis thaliana] gi|15450707|gb|AAK96625.1| At1g01090/T25K16_8 [Arabidopsis thaliana] gi|17380622|gb|AAL36074.1| At1g01090/T25K16_8 [Arabidopsis thaliana] gi|110742108|dbj|BAE98984.1| pyruvate dehydrogenase E1 alpha subunit [Arabidopsis thaliana] gi|332189112|gb|AEE27233.1| pyruvate dehydrogenase E1 component subunit alpha [Arabidopsis thaliana]

 Score =  722 bits (1864), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/436 (80%), Positives = 383/436 (87%), Gaps = 10/436 (2%)

Query: 1   MATAYSSAKFVQPLSLNSTINGRSRDNSLFDPLKTG--TSFLGSTRKLRVNSVHSNQGNV 58
           MATA++  K    + L+      S +N L  P++    +SFLGSTR L +  +  N  N 
Sbjct: 1   MATAFAPTKLTATVPLHG-----SHENRLLLPIRLAPPSSFLGSTRSLSLRRL--NHSNA 53

Query: 59  RRRLPVVAVSEVVKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGF 118
            RR PVV+V EVVKEK+  + ++LLITK+EGLELYEDMILGRSFEDMCAQMYYRGKMFGF
Sbjct: 54  TRRSPVVSVQEVVKEKQSTNNTSLLITKEEGLELYEDMILGRSFEDMCAQMYYRGKMFGF 113

Query: 119 VHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQG 178
           VHLYNGQEAVSTGFIKLL K DSVVSTYRDHVHALSKGV ARAVMSELFGK TGCCRGQG
Sbjct: 114 VHLYNGQEAVSTGFIKLLTKSDSVVSTYRDHVHALSKGVSARAVMSELFGKVTGCCRGQG 173

Query: 179 GSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNN 238
           GSMHMFSKEHN+LGGFAFIGEGIPVATGAAF+SKYRREVLK+ DCD VT+AFFGDGTCNN
Sbjct: 174 GSMHMFSKEHNMLGGFAFIGEGIPVATGAAFSSKYRREVLKQ-DCDDVTVAFFGDGTCNN 232

Query: 239 GQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDV 298
           GQFFECLNMAAL+KLPI+FVVENNLWAIGMSHLRATSDP+I+KKGPAFGMPG HVDGMDV
Sbjct: 233 GQFFECLNMAALYKLPIIFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDV 292

Query: 299 LKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAARDPITALK 358
           LKVREVAKEA+ RARRGEGPTLVECETYRFRGHSLADPDELRD AEKA+YAARDPI ALK
Sbjct: 293 LKVREVAKEAVTRARRGEGPTLVECETYRFRGHSLADPDELRDAAEKAKYAARDPIAALK 352

Query: 359 KYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPPRSQLLENVFADPKGFGIGPDG 418
           KYLIE+ LA EAELK+IEKKIDE+VE+AVEFAD S  P RSQLLENVFADPKGFGIGPDG
Sbjct: 353 KYLIENKLAKEAELKSIEKKIDELVEEAVEFADASPQPGRSQLLENVFADPKGFGIGPDG 412

Query: 419 RYRCEDPKFTEGTAHV 434
           RYRCEDPKFTEGTA V
Sbjct: 413 RYRCEDPKFTEGTAQV 428

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297843008|ref|XP_002889385.1| PDH-E1 alpha [Arabidopsis lyrata subsp. lyrata] gi|297335227|gb|EFH65644.1| PDH-E1 alpha [Arabidopsis lyrata subsp. lyrata]

 Score =  722 bits (1864), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/439 (80%), Positives = 386/439 (87%), Gaps = 12/439 (2%)

Query: 1   MATAYSSAKFVQPLSLNSTINGRSRDNSLFDPLK----TGTSFLGSTRKLRVNSVHS-NQ 55
           MATA++  K    + L+      S++N L  P++    + +SFLGSTR L VNS    N 
Sbjct: 1   MATAFAPTKLTATVPLHG-----SQENRLLLPIRLAPLSSSSFLGSTRSLTVNSPRRLNH 55

Query: 56  GNVRRRLPVVAVSEVVKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKM 115
            N  RR PVVAV EVVKEK+  + ++LLITK+EGLELYEDMILGRSFEDMCAQMYYRGKM
Sbjct: 56  SNATRRSPVVAVQEVVKEKQSTN-NSLLITKEEGLELYEDMILGRSFEDMCAQMYYRGKM 114

Query: 116 FGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCR 175
           FGFVHLYNGQEAVSTGFIKLL K DSVVSTYRDHVHALSKGV ARAVMSELFGK TGCCR
Sbjct: 115 FGFVHLYNGQEAVSTGFIKLLTKSDSVVSTYRDHVHALSKGVSARAVMSELFGKVTGCCR 174

Query: 176 GQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGT 235
           GQGGSMHMFSKEHN+LGGFAFIGEGIPVATGAAF+SKYRREVLK+ DC+ VT+AFFGDGT
Sbjct: 175 GQGGSMHMFSKEHNMLGGFAFIGEGIPVATGAAFSSKYRREVLKQ-DCEDVTVAFFGDGT 233

Query: 236 CNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDG 295
           CNNGQF+ECLNMAAL+KLPI+FVVENNLWAIGMSHLRATSDP+I+KKGPAFGMPG HVDG
Sbjct: 234 CNNGQFYECLNMAALYKLPIIFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHVDG 293

Query: 296 MDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAARDPIT 355
           MDVLKVREVAKEA+ RARRGEGPTLVECETYRFRGHSLADPDELRD AEKA+YAARDPI 
Sbjct: 294 MDVLKVREVAKEAVTRARRGEGPTLVECETYRFRGHSLADPDELRDAAEKAKYAARDPIV 353

Query: 356 ALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPPRSQLLENVFADPKGFGIG 415
           ALKKYLIE+ LA EAELK+IEKKIDE+VE+AVEFAD S  P RSQLLENVFADPKGFGIG
Sbjct: 354 ALKKYLIENKLAKEAELKSIEKKIDELVEEAVEFADASPQPGRSQLLENVFADPKGFGIG 413

Query: 416 PDGRYRCEDPKFTEGTAHV 434
           PDGRYRCEDPKFTEGTA V
Sbjct: 414 PDGRYRCEDPKFTEGTAQV 432

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520231|ref|XP_003528767.1| PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-like [Glycine max]

 Score =  717 bits (1850), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/438 (81%), Positives = 382/438 (87%), Gaps = 14/438 (3%)

Query: 4   AYSSAKFV-QPLSLNSTINGRSRDNSL---FDPLKTG--TSFLGSTRKL-RVNSVHSNQG 56
           ++++ KF   PL L ST   RS D  L   FD  K    +SFLGSTRKL R N++     
Sbjct: 2   SFTATKFSPSPLPLTST-TPRSNDKPLSFSFDHSKPNPSSSFLGSTRKLLRFNALARPHA 60

Query: 57  NVRRRLPVVAVSEVVKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMF 116
           + R      A S       ++  SNLL+TK+EGLELYEDMILGR FED CA+MYYRGKMF
Sbjct: 61  HPR------ASSSPAAAVLLERTSNLLVTKEEGLELYEDMILGRFFEDKCAEMYYRGKMF 114

Query: 117 GFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRG 176
           GFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVP+R VMSELFGKATGCCRG
Sbjct: 115 GFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPSRQVMSELFGKATGCCRG 174

Query: 177 QGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTC 236
           QGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAF+SKYRREVLK+ADCDHVTLAFFGDGTC
Sbjct: 175 QGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFSSKYRREVLKQADCDHVTLAFFGDGTC 234

Query: 237 NNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGM 296
           NNGQF+ECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQI+KKGPAFGMPG HVDGM
Sbjct: 235 NNGQFYECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIWKKGPAFGMPGVHVDGM 294

Query: 297 DVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAARDPITA 356
           DVLKVREVAKEA+ERARRG+GPTLVECETYRFRGHSLADPDELRDPAEK  YA RDPITA
Sbjct: 295 DVLKVREVAKEAVERARRGDGPTLVECETYRFRGHSLADPDELRDPAEKEHYAGRDPITA 354

Query: 357 LKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPPRSQLLENVFADPKGFGIGP 416
           LK+YLIE++LA+E ELKAIEKKIDE++EDAVEFAD S  PPRSQLLENVFADPKGFGIGP
Sbjct: 355 LKQYLIENNLANEQELKAIEKKIDEILEDAVEFADSSPLPPRSQLLENVFADPKGFGIGP 414

Query: 417 DGRYRCEDPKFTEGTAHV 434
           DGRYRCEDPKFTEGTAHV
Sbjct: 415 DGRYRCEDPKFTEGTAHV 432

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|193290722|gb|ACF17669.1| putative pyruvate dehydrogenase E1 alpha subunit [Capsicum annuum]

 Score =  716 bits (1848), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/438 (81%), Positives = 386/438 (88%), Gaps = 11/438 (2%)

Query: 1   MATAYSSAKFVQPLSLNSTINGRSRDNSLFDPLKTGTSFLG-STRKLRVNSVHSNQGNVR 59
           MAT++ +AK    L LNST   RS D  L   +   +SFLG S  KL +N+  S Q   R
Sbjct: 1   MATSFFTAKV---LPLNST---RSADKPLLGQVLLPSSFLGPSAHKLSLNNAFSLQSQ-R 53

Query: 60  RRLPVVAVSEVVKEKKVKSIS---NLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMF 116
           R   VVAVS+VVK+ K KS S   NLLITK+EGLELYEDM+LGR+FEDMCAQMYYRGKMF
Sbjct: 54  RSNAVVAVSDVVKDNKSKSKSSISNLLITKEEGLELYEDMVLGRAFEDMCAQMYYRGKMF 113

Query: 117 GFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRG 176
           GFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPAR VMSELFGK TGCCRG
Sbjct: 114 GFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARQVMSELFGKTTGCCRG 173

Query: 177 QGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTC 236
           QGGSMHMFSKEHN+LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTC
Sbjct: 174 QGGSMHMFSKEHNVLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTC 233

Query: 237 NNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGM 296
           NNGQF+ECLNMAALWKLPI+FVVENNLWAIGMSHLR+TSDP+I+KKGPAFGMPG HVDGM
Sbjct: 234 NNGQFYECLNMAALWKLPIIFVVENNLWAIGMSHLRSTSDPEIWKKGPAFGMPGVHVDGM 293

Query: 297 DVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAARDPITA 356
           DVLKVREVA EA+ RARRGEGPTLVECETYRFRGHSLADPDELRDPAEK  YA RDPITA
Sbjct: 294 DVLKVREVANEAVGRARRGEGPTLVECETYRFRGHSLADPDELRDPAEKNHYATRDPITA 353

Query: 357 LKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPPRSQLLENVFADPKGFGIGP 416
           LKKY+ E++L +EAELKAI+KKIDE+VE++VEFAD S  P R+QLLENVFADP+GFGIGP
Sbjct: 354 LKKYMFENNLVNEAELKAIDKKIDELVEESVEFADASPVPARNQLLENVFADPRGFGIGP 413

Query: 417 DGRYRCEDPKFTEGTAHV 434
           DGRYRCEDPKFTEGTA V
Sbjct: 414 DGRYRCEDPKFTEGTAQV 431

Source: Capsicum annuum

Species: Capsicum annuum

Genus: Capsicum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	434
TAIR|locus:2200980	428	PDH-E1 ALPHA "pyruvate dehydro	0.981	0.995	0.763	6.1e-174
GENEDB_PFALCIPARUM|PF11_0256	608	PF11_0256 "pyruvate dehydrogen	0.317	0.226	0.589	2.8e-78
UNIPROTKB|Q8IIB8	608	PF11_0256 "Pyruvate dehydrogen	0.317	0.226	0.589	2.8e-78
UNIPROTKB|Q0C0R6	336	pdhA "Pyruvate dehydrogenase c	0.730	0.943	0.446	2.6e-70
TIGR_CMR|GSU_2443	325	GSU_2443 "dehydrogenase comple	0.665	0.889	0.452	1.4e-69
TIGR_CMR|SPO_2240	330	SPO_2240 "pyruvate dehydrogena	0.725	0.954	0.420	1.3e-66
TIGR_CMR|NSE_0802	334	NSE_0802 "pyruvate dehydrogena	0.716	0.931	0.407	2.2e-66
TIGR_CMR|ECH_0220	327	ECH_0220 "pyruvate dehydrogena	0.732	0.972	0.398	5.8e-66
UNIPROTKB|Q81PM6	332	acoA "TPP-dependent acetoin de	0.737	0.963	0.393	1.6e-61
TIGR_CMR|BA_2776	332	BA_2776 "TPP-dependent acetoin	0.737	0.963	0.393	1.6e-61

TAIR|locus:2200980 PDH-E1 ALPHA "pyruvate dehydrogenase E1 alpha" [Arabidopsis thaliana (taxid:3702)]

 Score = 1690 (600.0 bits), Expect = 6.1e-174, P = 6.1e-174
 Identities = 333/436 (76%), Positives = 358/436 (82%)

Query:     1 MATAYSSAKFVQPLSLNSTINGRSRDNSLFDPLKTG--TSFLGSTRKLRVNSVHSNQGNV 58
             MATA++  K    + L+      S +N L  P++    +SFLGSTR L +  +  N  N 
Sbjct:     1 MATAFAPTKLTATVPLHG-----SHENRLLLPIRLAPPSSFLGSTRSLSLRRL--NHSNA 53

Query:    59 RRRLPXXXXXXXXXXXXXXXISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGF 118
              RR P                ++LLITK+EGLELYEDMILGRSFEDMCAQMYYRGKMFGF
Sbjct:    54 TRRSPVVSVQEVVKEKQSTNNTSLLITKEEGLELYEDMILGRSFEDMCAQMYYRGKMFGF 113

Query:   119 VHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQG 178
             VHLYNGQEAVSTGFIKLL K DSVVSTYRDHVHALSKGV ARAVMSELFGK TGCCRGQG
Sbjct:   114 VHLYNGQEAVSTGFIKLLTKSDSVVSTYRDHVHALSKGVSARAVMSELFGKVTGCCRGQG 173

Query:   179 GSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNN 238
             GSMHMFSKEHN+LGGFAFIGEGIPVATGAAF+SKYRREVLK+ DCD VT+AFFGDGTCNN
Sbjct:   174 GSMHMFSKEHNMLGGFAFIGEGIPVATGAAFSSKYRREVLKQ-DCDDVTVAFFGDGTCNN 232

Query:   239 GQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDV 298
             GQFFECLNMAAL+KLPI+FVVENNLWAIGMSHLRATSDP+I+KKGPAFGMPG HVDGMDV
Sbjct:   233 GQFFECLNMAALYKLPIIFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDV 292

Query:   299 LKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAARDPITALK 358
             LKVREVAKEA+ RARRGEGPTLVECETYRFRGHSLADPDELRD AEKA+YAARDPI ALK
Sbjct:   293 LKVREVAKEAVTRARRGEGPTLVECETYRFRGHSLADPDELRDAAEKAKYAARDPIAALK 352

Query:   359 KYLIESSLASEAELKAIEKKIXXXXXXXXXXXXXXXPPPRSQLLENVFADPKGFGIGPDG 418
             KYLIE+ LA EAELK+IEKKI                P RSQLLENVFADPKGFGIGPDG
Sbjct:   353 KYLIENKLAKEAELKSIEKKIDELVEEAVEFADASPQPGRSQLLENVFADPKGFGIGPDG 412

Query:   419 RYRCEDPKFTEGTAHV 434
             RYRCEDPKFTEGTA V
Sbjct:   413 RYRCEDPKFTEGTAQV 428

GO:0004739 "pyruvate dehydrogenase (acetyl-transferring) activity" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0006096 "glycolysis" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA;ISS

GO:0016624 "oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009536 "plastid" evidence=ISS

GENEDB_PFALCIPARUM|PF11_0256 PF11_0256 "pyruvate dehydrogenase E1 component, alpha subunit, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 431 (156.8 bits), Expect = 2.8e-78, Sum P(2) = 2.8e-78
 Identities = 82/139 (58%), Positives = 107/139 (76%)

Query:    79 ISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKK 138
             IS++ I+++E   LYEDM LGR FE++ A++YY  ++ GFVHLYNGQEAVSTG IK LK 
Sbjct:   183 ISDVNISREEICTLYEDMYLGRLFENLVAKLYYNKRVNGFVHLYNGQEAVSTGIIKNLKN 242

Query:   139 EDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCC-RGQGGSMHMFSKEHNLLGGFAFI 197
              D V STYRDHVHALSKGVPA  +++EL+G   G   +G+GGSMH++SKE+N +GGF FI
Sbjct:   243 SDFVTSTYRDHVHALSKGVPAHKILNELYGNYYGSTNKGKGGSMHIYSKENNFIGGFGFI 302

Query:   198 GEGIPVATGAAFTSKYRRE 216
             GE IP+A G A++  Y+ E
Sbjct:   303 GEQIPIAVGLAYSILYKNE 321

GO:0020011 "apicoplast" evidence=IDA

GO:0004739 "pyruvate dehydrogenase (acetyl-transferring) activity" evidence=ISS

GO:0006099 "tricarboxylic acid cycle" evidence=ISS

UNIPROTKB|Q8IIB8 PF11_0256 "Pyruvate dehydrogenase E1 component, alpha subunit, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 431 (156.8 bits), Expect = 2.8e-78, Sum P(2) = 2.8e-78
 Identities = 82/139 (58%), Positives = 107/139 (76%)

Query:    79 ISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKK 138
             IS++ I+++E   LYEDM LGR FE++ A++YY  ++ GFVHLYNGQEAVSTG IK LK 
Sbjct:   183 ISDVNISREEICTLYEDMYLGRLFENLVAKLYYNKRVNGFVHLYNGQEAVSTGIIKNLKN 242

Query:   139 EDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCC-RGQGGSMHMFSKEHNLLGGFAFI 197
              D V STYRDHVHALSKGVPA  +++EL+G   G   +G+GGSMH++SKE+N +GGF FI
Sbjct:   243 SDFVTSTYRDHVHALSKGVPAHKILNELYGNYYGSTNKGKGGSMHIYSKENNFIGGFGFI 302

Query:   198 GEGIPVATGAAFTSKYRRE 216
             GE IP+A G A++  Y+ E
Sbjct:   303 GEQIPIAVGLAYSILYKNE 321

GO:0004739 "pyruvate dehydrogenase (acetyl-transferring) activity" evidence=ISS

GO:0006099 "tricarboxylic acid cycle" evidence=ISS

GO:0020011 "apicoplast" evidence=IDA

UNIPROTKB|Q0C0R6 pdhA "Pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase, alpha subunit" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 712 (255.7 bits), Expect = 2.6e-70, P = 2.6e-70
 Identities = 145/325 (44%), Positives = 202/325 (62%)

Query:    85 TKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVS 144
             TK E L  Y +M+L R FE+   Q+Y  GK+ GF HLY GQEAV TG    LK+ D V++
Sbjct:    16 TKAEMLAFYREMLLIRRFEEKAGQLYGMGKIAGFCHLYIGQEAVVTGMQACLKEGDQVIT 75

Query:   145 TYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVA 204
              YRDH H L+  +  + VM+EL G+  G  RG+GGSMHMFSKE N  GG   +G  +P+ 
Sbjct:    76 GYRDHGHMLACQMDPKGVMAELTGRVGGYSRGKGGSMHMFSKEKNFYGGHGIVGAQVPLG 135

Query:   205 TGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLW 264
             TG AF +KYR         D+V+LA+FGDG  N GQ +E  NMA+LWKLP+V+V+ENN++
Sbjct:   136 TGLAFANKYRGN-------DNVSLAYFGDGAANQGQVYEAFNMASLWKLPVVYVIENNMY 188

Query:   265 AIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECE 324
             A+G S  R  S+ +++K+G +F + G  VDGMDVL VRE  ++A++ AR G+GP ++E +
Sbjct:   189 AMGTSVERHASEVELFKRGISFEIEGEEVDGMDVLAVREAGEKAVKHARAGKGPYILEMK 248

Query:   325 TYRFRGHSLADPDELRDPAEKARYAAR-DPITALKKYLIESSLASEAELKAIEKKIXXXX 383
             TYR+RGHS++DP + R   E     +  DPI  LK  ++E   A+E ELK I+ +I    
Sbjct:   249 TYRYRGHSMSDPAKYRKREEVDDIRSHHDPIEGLKGQILEQGHATEDELKKIDNEIKAIV 308

Query:   384 XXXXXXXXXXXPPPRSQLLENVFAD 408
                         P  S+L  +V  +
Sbjct:   309 KEAADFSLESPEPDASELWTDVLIE 333

GO:0004738 "pyruvate dehydrogenase activity" evidence=ISS

GO:0004739 "pyruvate dehydrogenase (acetyl-transferring) activity" evidence=ISS

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=ISS

GO:0045250 "cytosolic pyruvate dehydrogenase complex" evidence=ISS

TIGR_CMR|GSU_2443 GSU_2443 "dehydrogenase complex, E1 component, alpha subunit" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 705 (253.2 bits), Expect = 1.4e-69, P = 1.4e-69
 Identities = 134/296 (45%), Positives = 189/296 (63%)

Query:    83 LITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSV 142
             ++   E L+++E M+L R FE+ CA+ Y +G + GF+HLY+GQEAV+ G    L+K+D +
Sbjct:     8 ILPDSELLKMHEQMVLSREFEESCAEQYTKGHITGFLHLYSGQEAVAVGATAALRKDDYI 67

Query:   143 VSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIP 202
             +S YR+H  A+ +G   R VM+ELFGKATG C+G+GGSMH+F      +GG+A +G   P
Sbjct:    68 LSAYREHAQAIVRGAEPRRVMAELFGKATGMCKGKGGSMHLFDPSLAFMGGYAIVGGQFP 127

Query:   203 VATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN 262
             +A G AF SKYR+E         ++  FFGDG  N G F E LN A LW+LP++F+ ENN
Sbjct:   128 IAVGLAFASKYRKE-------GRISACFFGDGAVNQGTFHESLNWARLWELPVLFICENN 180

Query:   263 LWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVE 322
              + IG +  RA++   I+K+   + +P   VDGMDV+ V E  K   E  R    P L+E
Sbjct:   181 FYGIGTAVSRASALSDIHKRTCGYDIPSVRVDGMDVMAVHEAVKWGAEWVREHSRPYLIE 240

Query:   323 CETYRFRGHSLADPDELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKK 378
               TYRFRGHS+ADP + R  AE   + +RDPI   +K L+E  +A+EAEL A+ +K
Sbjct:   241 AMTYRFRGHSMADPGKYRSAAEVELWKSRDPIPNFEKRLVEEGIATEAELAAVLEK 296

GO:0016491 "oxidoreductase activity" evidence=ISS

TIGR_CMR|SPO_2240 SPO_2240 "pyruvate dehydrogenase complex, E1 component, alpha subunit" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 677 (243.4 bits), Expect = 1.3e-66, P = 1.3e-66
 Identities = 137/326 (42%), Positives = 198/326 (60%)

Query:    85 TKQEGLE-LYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 143
             T  E L+  Y +M+L R FE+   Q+Y  G + GF HLY GQEAV  G     ++ D  +
Sbjct:    13 TSAEELKHYYREMLLIRRFEEKAGQLYGMGLIGGFCHLYIGQEAVVVGLEAAAEEGDKRI 72

Query:   144 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 203
             ++YRDH H L+ G+    VM+EL G+  G  +G+GGSMHMFSKE +  GG   +G  +P+
Sbjct:    73 TSYRDHGHMLACGMDPGGVMAELTGREGGLSKGKGGSMHMFSKEKHFYGGHGIVGAQVPL 132

Query:   204 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 263
               G AF  KY+       D   VT  +FGDG  N GQ +E  NMAALWKLP++FV+ENN 
Sbjct:   133 GAGLAFADKYQ-------DNGRVTFTYFGDGAANQGQVYETFNMAALWKLPVIFVIENNQ 185

Query:   264 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323
             +A+G +  R+TS P IY +G AFG+PG  VDGM+VL V+E  ++A+   R G+GP ++E 
Sbjct:   186 YAMGTAQKRSTSSPDIYTRGEAFGIPGETVDGMNVLSVKEAGEKAVAHCRAGKGPYILEV 245

Query:   324 ETYRFRGHSLADPDELR--DPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIXX 381
             +TYR+RGHS++DP + R  +  +K R  + DPI  +++ L+    A+E +LKAI+K+I  
Sbjct:   246 KTYRYRGHSMSDPAKYRTREEVQKVREQS-DPIEMVREMLLSGKHATEDDLKAIDKEIKE 304

Query:   382 XXXXXXXXXXXXXPPPRSQLLENVFA 407
                           P   +L  +++A
Sbjct:   305 IVNQAAEFSKESPEPSVDELWTDIYA 330

GO:0004739 "pyruvate dehydrogenase (acetyl-transferring) activity" evidence=ISS

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=ISS

GO:0045250 "cytosolic pyruvate dehydrogenase complex" evidence=ISS

TIGR_CMR|NSE_0802 NSE_0802 "pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase alpha subunit" [Neorickettsia sennetsu str. Miyayama (taxid:222891)]

 Score = 675 (242.7 bits), Expect = 2.2e-66, P = 2.2e-66
 Identities = 130/319 (40%), Positives = 194/319 (60%)

Query:    90 LELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDH 149
             L LYE M+L R FE+   Q+Y  G++ GF HLY GQEAV+ G    LK+EDSV+++YRDH
Sbjct:    24 LPLYEKMLLIRRFEERAGQLYSMGEICGFCHLYIGQEAVAVGLDYCLKREDSVITSYRDH 83

Query:   150 VHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAF 209
                L +G     +M+EL GK++GC  G+GGSMHMF  E N  GG   +G  + + TG AF
Sbjct:    84 GMMLVRGSSPDVMMAELLGKSSGCSNGKGGSMHMFDPERNFFGGHGIVGSQVSLGTGIAF 143

Query:   210 TSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMS 269
               KYR       D + V  + FGDG  N GQ +E  NMAALWKLPI++VVENN++A+G S
Sbjct:   144 AEKYR-------DSNAVVASCFGDGAINQGQVYESFNMAALWKLPILYVVENNMYAMGSS 196

Query:   270 HLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR 329
                  ++  +  +G +FG+PG+  +GMD++ V  V   A+E  R G GP LVE +TYRF+
Sbjct:   197 VESVCANSSLSNRGESFGIPGYSANGMDLMDVIRVTMNAVEGVRGGSGPVLVEYKTYRFK 256

Query:   330 GHSLADPDELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIXXXXXXXXXX 389
             GHS++DP   R   E + +  RDP+ +++  L+++ +   +EL+ ++K +          
Sbjct:   257 GHSMSDPASYRSKEEVSSFKERDPLKSVETLLLQAGVL-HSELERVQKAVKDQVSSSVAY 315

Query:   390 XXXXXPPPRSQLLENVFAD 408
                   P ++ L+ +V+++
Sbjct:   316 ARASTFPDKASLMTDVYSE 334

GO:0004739 "pyruvate dehydrogenase (acetyl-transferring) activity" evidence=ISS

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=ISS

GO:0045250 "cytosolic pyruvate dehydrogenase complex" evidence=ISS

TIGR_CMR|ECH_0220 ECH_0220 "pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase alpha subunit" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 671 (241.3 bits), Expect = 5.8e-66, P = 5.8e-66
 Identities = 130/326 (39%), Positives = 192/326 (58%)

Query:    84 ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 143
             +T ++ +  Y  M+L R FE+   Q+Y  G + GF HLY GQEA++TG    +   DS++
Sbjct:     9 LTNEQLVNCYYSMLLMRRFEEKSGQLYGMGLIGGFCHLYIGQEAIATGIQNAIIDGDSII 68

Query:   144 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 203
             ++YRDH   LS G   + VM+EL GK+TGC +G+GGSMHMF+ E +  GG   +G  +P+
Sbjct:    69 TSYRDHGFMLSVGTDPKYVMAELMGKSTGCSKGKGGSMHMFNIEKHFFGGHGIVGAQVPI 128

Query:   204 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 263
              TG A  +KY++        ++V     GDG  N GQ +E  NMAALWKLP+++V+ENN 
Sbjct:   129 GTGIALANKYKKN-------NNVVFVCLGDGAVNQGQVYESFNMAALWKLPVIYVIENNE 181

Query:   264 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323
             +A+G S  R++    +YKKG +FG+PG  VDGMD+  V + A +A+   R   GP L+E 
Sbjct:   182 YAMGTSVSRSSYITDLYKKGESFGVPGHQVDGMDLFSVTQAATDAVNYCRANNGPILLEM 241

Query:   324 ETYRFRGHSLADPDELRDPAEKARYAA-RDPITALKKYLIESSLASEAELKAIEKKIXXX 382
             +TYR+RGHS++DP + R   E       +DPIT LK YLI +++ S+ E    +K+I   
Sbjct:   242 KTYRYRGHSMSDPAKYRSKQEVEEIKEHKDPITNLKNYLISNNIISDDECNKYDKEIRNI 301

Query:   383 XXXXXXXXXXXXPPPRSQLLENVFAD 408
                          P    L  +++ D
Sbjct:   302 VKESVDFSQNSSEPDAKMLYTDIYKD 327

GO:0004739 "pyruvate dehydrogenase (acetyl-transferring) activity" evidence=ISS

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=ISS

GO:0045250 "cytosolic pyruvate dehydrogenase complex" evidence=ISS

UNIPROTKB|Q81PM6 acoA "TPP-dependent acetoin dehydrogenase E1 alpha-subunit" [Bacillus anthracis (taxid:1392)]

 Score = 629 (226.5 bits), Expect = 1.6e-61, P = 1.6e-61
 Identities = 129/328 (39%), Positives = 193/328 (58%)

Query:    84 ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 143
             ITK++   +YE M+  R FED   +++ +G + GFVHLY G+EAV+ G    L   DS+ 
Sbjct:    12 ITKEQARWMYEKMLEIRKFEDKVHELFAQGVLPGFVHLYAGEEAVAVGVCAHLTDSDSIT 71

Query:   144 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 203
             ST+R H H ++KG     +M+ELFGKATG C+G+GGSMH+   +  +LG    +G G P+
Sbjct:    72 STHRGHGHCIAKGCDLNGMMAELFGKATGLCKGKGGSMHIADLDKGMLGANGIVGGGFPL 131

Query:   204 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 263
             A G+A T+KY+    K+     V++ FFGDG  N G F E +N+AA+WKLP++F+ ENN 
Sbjct:   132 ACGSALTAKYKGT--KD-----VSVCFFGDGANNEGTFHEGVNLAAIWKLPVIFIAENNG 184

Query:   264 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323
             +    +   A+S   I  +  A+ +PG  VDG D+L V + A+EA+ERAR G+GPT++EC
Sbjct:   185 YGEATTFEYASSCDSIADRAKAYNIPGVQVDGKDLLAVYKAAEEAVERARNGDGPTIIEC 244

Query:   324 ETYRFRGHSLADPDELRDPAEKARYA-ARDPITALKKYLIESSLASEAELKAIEKKIXXX 382
              TYR  GH   +    +   EK  +   +D I   +K+LI  +L +E+EL  +EK +   
Sbjct:   245 MTYRNYGHFEGEAQTYKTSEEKEEHLNEKDAIVNFRKHLIHEALLTESELVDMEKAVDEA 304

Query:   383 XXXXXXXXXXXXPPPRSQLLENVFADPK 410
                          P   +LL++V+   K
Sbjct:   305 VQKSIEFSENSPYPEDEELLKDVYVSYK 332

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=ISS

GO:0019152 "acetoin dehydrogenase activity" evidence=ISS

TIGR_CMR|BA_2776 BA_2776 "TPP-dependent acetoin dehydrogenase E1 alpha-subunit" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 629 (226.5 bits), Expect = 1.6e-61, P = 1.6e-61
 Identities = 129/328 (39%), Positives = 193/328 (58%)

Query:    84 ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 143
             ITK++   +YE M+  R FED   +++ +G + GFVHLY G+EAV+ G    L   DS+ 
Sbjct:    12 ITKEQARWMYEKMLEIRKFEDKVHELFAQGVLPGFVHLYAGEEAVAVGVCAHLTDSDSIT 71

Query:   144 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 203
             ST+R H H ++KG     +M+ELFGKATG C+G+GGSMH+   +  +LG    +G G P+
Sbjct:    72 STHRGHGHCIAKGCDLNGMMAELFGKATGLCKGKGGSMHIADLDKGMLGANGIVGGGFPL 131

Query:   204 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 263
             A G+A T+KY+    K+     V++ FFGDG  N G F E +N+AA+WKLP++F+ ENN 
Sbjct:   132 ACGSALTAKYKGT--KD-----VSVCFFGDGANNEGTFHEGVNLAAIWKLPVIFIAENNG 184

Query:   264 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323
             +    +   A+S   I  +  A+ +PG  VDG D+L V + A+EA+ERAR G+GPT++EC
Sbjct:   185 YGEATTFEYASSCDSIADRAKAYNIPGVQVDGKDLLAVYKAAEEAVERARNGDGPTIIEC 244

Query:   324 ETYRFRGHSLADPDELRDPAEKARYA-ARDPITALKKYLIESSLASEAELKAIEKKIXXX 382
              TYR  GH   +    +   EK  +   +D I   +K+LI  +L +E+EL  +EK +   
Sbjct:   245 MTYRNYGHFEGEAQTYKTSEEKEEHLNEKDAIVNFRKHLIHEALLTESELVDMEKAVDEA 304

Query:   383 XXXXXXXXXXXXPPPRSQLLENVFADPK 410
                          P   +LL++V+   K
Sbjct:   305 VQKSIEFSENSPYPEDEELLKDVYVSYK 332

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=ISS

GO:0019152 "acetoin dehydrogenase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O13366	ODPA_KLULA	1, ., 2, ., 4, ., 1	0.3541	0.8133	0.8567	yes	no
Q7XTJ3	ODPA3_ORYSJ	1, ., 2, ., 4, ., 1	0.8668	0.8087	0.8258	yes	no
O24457	ODPA3_ARATH	1, ., 2, ., 4, ., 1	0.8096	0.9815	0.9953	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.2.4	0.963
4th Layer	1.2.4.1	0.946

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	434
PLN02374	433	PLN02374, PLN02374, pyruvate dehydrogenase (acetyl	0.0
TIGR03182	315	TIGR03182, PDH_E1_alph_y, pyruvate dehydrogenase E	0.0
CHL00149	341	CHL00149, odpA, pyruvate dehydrogenase E1 componen	0.0
cd02000	293	cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosph	1e-153
COG1071	358	COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogena	1e-147
pfam00676	303	pfam00676, E1_dh, Dehydrogenase E1 component	1e-126
PLN02269	362	PLN02269, PLN02269, Pyruvate dehydrogenase E1 comp	1e-101
TIGR03181	341	TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E	7e-89
cd02012	255	cd02012, TPP_TK, Thiamine pyrophosphate (TPP) fami	3e-10
cd00568	168	cd00568, TPP_enzymes, Thiamine pyrophosphate (TPP)	1e-09
PRK05899	586	PRK05899, PRK05899, transketolase; Reviewed	6e-07
TIGR00232	653	TIGR00232, tktlase_bact, transketolase, bacterial	1e-06
pfam02775	151	pfam02775, TPP_enzyme_C, Thiamine pyrophosphate en	2e-06
COG3959	243	COG3959, COG3959, Transketolase, N-terminal subuni	5e-06
COG0028	550	COG0028, IlvB, Thiamine pyrophosphate-requiring en	2e-05
cd02002	178	cd02002, TPP_BFDC, Thiamine pyrophosphate (TPP) fa	3e-05
cd02015	186	cd02015, TPP_AHAS, Thiamine pyrophosphate (TPP) fa	3e-05
cd02004	172	cd02004, TPP_BZL_OCoD_HPCL, Thiamine pyrophosphate	9e-05
COG0021	663	COG0021, TktA, Transketolase [Carbohydrate transpo	3e-04
cd02005	183	cd02005, TPP_PDC_IPDC, Thiamine pyrophosphate (TPP	3e-04
PRK07710	571	PRK07710, PRK07710, acetolactate synthase catalyti	4e-04
PRK07092	530	PRK07092, PRK07092, benzoylformate decarboxylase;	5e-04
pfam00456	333	pfam00456, Transketolase_N, Transketolase, thiamin	8e-04
cd02014	178	cd02014, TPP_POX, Thiamine pyrophosphate (TPP) fam	0.002
cd02007	195	cd02007, TPP_DXS, Thiamine pyrophosphate (TPP) fam	0.002

>gnl|CDD|215213 PLN02374, PLN02374, pyruvate dehydrogenase (acetyl-transferring)

 Score =  816 bits (2108), Expect = 0.0
 Identities = 362/435 (83%), Positives = 385/435 (88%), Gaps = 3/435 (0%)

Query: 1   MATAYSSAKFVQPLSLNSTINGRSRDNSLFDPLKTGTSFLGSTRKLRVNSVHSNQGNVRR 60
           MA A+++   + P+   S+ +     + L   LK  ++F GST KL  +    N  N RR
Sbjct: 1   MAAAFAATSLLVPVPARSSRDDAPS-SPLRGALKRSSAFTGSTSKL-SSLRGLNAANGRR 58

Query: 61  RLPVVAVSEVVKEKKVKSI-SNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFV 119
           R  VVAVS VVKEK  K+  S+LL+T++EGLELYEDM+LGRSFEDMCAQMYYRGKMFGFV
Sbjct: 59  RSTVVAVSAVVKEKNSKASASDLLVTREEGLELYEDMVLGRSFEDMCAQMYYRGKMFGFV 118

Query: 120 HLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGG 179
           HLYNGQEAVSTGFIKLLKK+DSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGG
Sbjct: 119 HLYNGQEAVSTGFIKLLKKDDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGG 178

Query: 180 SMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNG 239
           SMHMFSKEHNLLGGFAFIGEGIPVATGAAF+SKYRREVLKE  CD VTLAFFGDGTCNNG
Sbjct: 179 SMHMFSKEHNLLGGFAFIGEGIPVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCNNG 238

Query: 240 QFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVL 299
           QFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDP+I+KKGPAFGMPG HVDGMDVL
Sbjct: 239 QFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDVL 298

Query: 300 KVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAARDPITALKK 359
           KVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKA YAARDPI ALKK
Sbjct: 299 KVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKAHYAARDPIAALKK 358

Query: 360 YLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPPRSQLLENVFADPKGFGIGPDGR 419
           YLIE+ LA+EAELKAIEKKIDEVVEDAVEFAD S  PPRSQLLENVFADPKGFGIGPDGR
Sbjct: 359 YLIENGLATEAELKAIEKKIDEVVEDAVEFADASPLPPRSQLLENVFADPKGFGIGPDGR 418

Query: 420 YRCEDPKFTEGTAHV 434
           YRCEDPKFT GTA V
Sbjct: 419 YRCEDPKFTAGTAQV 433

Length = 433

>gnl|CDD|234139 TIGR03182, PDH_E1_alph_y, pyruvate dehydrogenase E1 component, alpha subunit

 Score =  541 bits (1396), Expect = 0.0
 Identities = 176/322 (54%), Positives = 229/322 (71%), Gaps = 7/322 (2%)

Query: 86  KQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVST 145
           K+E LELY DM+L R FE+   Q+Y  GK+ GF HLY GQEAV+ G I  LK +D V+++
Sbjct: 1   KEELLELYRDMLLIRRFEEKAGQLYGMGKIGGFCHLYIGQEAVAVGLIAALKPDDYVITS 60

Query: 146 YRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVAT 205
           YRDH HAL++GVP + VM+EL G+ TGC +G+GGSMHMF +E N  GG   +G  +P+AT
Sbjct: 61  YRDHGHALARGVPPKEVMAELTGRETGCSKGKGGSMHMFDREKNFYGGHGIVGAQVPLAT 120

Query: 206 GAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA 265
           G AF +KYR         D+VT  FFGDG  N GQF+E  NMAALWKLP++FV+ENNL+A
Sbjct: 121 GLAFANKYRGN-------DNVTACFFGDGAANQGQFYESFNMAALWKLPVIFVIENNLYA 173

Query: 266 IGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECET 325
           +G +  R++S   +YK+G +FG+PG  VDGMDVL VRE AKEA+ERAR G+GP L+E +T
Sbjct: 174 MGTAVERSSSVTDLYKRGESFGIPGERVDGMDVLAVREAAKEAVERARSGKGPILLEMKT 233

Query: 326 YRFRGHSLADPDELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIDEVVED 385
           YRFRGHS++DP + R   E   +  RDPI  LK  LIE  +ASE ELK I+K++   VE+
Sbjct: 234 YRFRGHSMSDPAKYRSKEEVEEWRKRDPIEKLKARLIEQGIASEEELKEIDKEVRAEVEE 293

Query: 386 AVEFADESAPPPRSQLLENVFA 407
           AVEFA+ S  PP  +L  +V+A
Sbjct: 294 AVEFAENSPEPPVEELYTDVYA 315

Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc [Energy metabolism, Pyruvate dehydrogenase]. Length = 315

>gnl|CDD|177069 CHL00149, odpA, pyruvate dehydrogenase E1 component alpha subunit; Reviewed

 Score =  533 bits (1375), Expect = 0.0
 Identities = 226/325 (69%), Positives = 259/325 (79%)

Query: 84  ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 143
           I     L LYEDM+LGR+FEDMCAQMYYRGKMFGFVHLYNGQEAVSTG IKLL + D V 
Sbjct: 17  INSMWLLVLYEDMLLGRNFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGVIKLLAETDYVC 76

Query: 144 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 203
           STYRDHVHALSKGVP + VM+ELFGK TGC RG+GGSMH+FS  HN LGGFAFIGEGIP+
Sbjct: 77  STYRDHVHALSKGVPPKNVMAELFGKETGCSRGRGGSMHIFSAPHNFLGGFAFIGEGIPI 136

Query: 204 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 263
           A GAAF S YR++VLKE     VT  FFGDGT NNGQFFECLNMA LWKLPI+FVVENN 
Sbjct: 137 ALGAAFQSIYRQQVLKEVQPLRVTACFFGDGTTNNGQFFECLNMAVLWKLPIIFVVENNQ 196

Query: 264 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323
           WAIGM+H R+TS P+I+KK  AFG+PG  VDGMDVL VREVAKEA+ERAR+G+GPTL+E 
Sbjct: 197 WAIGMAHHRSTSIPEIHKKAEAFGLPGIEVDGMDVLAVREVAKEAVERARQGDGPTLIEA 256

Query: 324 ETYRFRGHSLADPDELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIDEVV 383
            TYRFRGHSLADPDELR   EK  + ARDPI  LK Y+I++ LAS+ EL  I++++   +
Sbjct: 257 LTYRFRGHSLADPDELRSKQEKEAWVARDPIKKLKSYIIDNELASQKELNKIQREVKIEI 316

Query: 384 EDAVEFADESAPPPRSQLLENVFAD 408
           E AV+FA  S  P  S L + +FAD
Sbjct: 317 EQAVQFAISSPEPNISDLKKYLFAD 341

Length = 341

>gnl|CDD|238958 cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC)

 Score =  435 bits (1121), Expect = e-153
 Identities = 149/300 (49%), Positives = 189/300 (63%), Gaps = 8/300 (2%)

Query: 92  LYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVH 151
           LY  M+L R F++   ++Y +GK+ GF HL  GQEAV+ G    L+  D V  TYRDH H
Sbjct: 1   LYRTMVLIRRFDERLLELYRQGKIGGFYHLSIGQEAVAVGVAAALRPGDWVFPTYRDHGH 60

Query: 152 ALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTS 211
           AL++GV  + +++ELFGK TG C+G+GGSMH+  KE N  GG   +G  +P+A GAA   
Sbjct: 61  ALARGVDLKEMLAELFGKETGPCKGRGGSMHIGDKEKNFFGGNGIVGGQVPLAAGAALAL 120

Query: 212 KYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHL 271
           KYR E       D V + FFGDG  N G F E LN AALWKLP++FV ENN +AI     
Sbjct: 121 KYRGE-------DRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFVCENNGYAISTPTS 173

Query: 272 RATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGH 331
           R T+   I  +  A+G+PG  VDG DVL V E AKEA+ERAR G GPTL+E  TYR  GH
Sbjct: 174 RQTAGTSIADRAAAYGIPGIRVDGNDVLAVYEAAKEAVERARAGGGPTLIEAVTYRLGGH 233

Query: 332 SLADPDEL-RDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFA 390
           S +D     R   E   +  RDPI  L+KYLIE+ + +E EL AIE ++   VE+AVEFA
Sbjct: 234 STSDDPSRYRTKEEVEEWKKRDPILRLRKYLIEAGILTEEELAAIEAEVKAEVEEAVEFA 293

PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine). Length = 293

>gnl|CDD|223997 COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]

 Score =  423 bits (1090), Expect = e-147
 Identities = 166/343 (48%), Positives = 214/343 (62%), Gaps = 11/343 (3%)

Query: 68  SEVVKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEA 127
              V E    + +   ++K+E LELY  M+L R F++   Q+  +GK+ GF HLY GQEA
Sbjct: 11  GRAVDELPGPNAA---LSKEELLELYRLMLLIRRFDEKMLQLQRQGKIGGFYHLYIGQEA 67

Query: 128 VSTGFIKLL-KKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSK 186
           V  G    L   ED +  TYRDH H L++GVP + +M+EL GKATG C+G+GGSMH   K
Sbjct: 68  VQVGAAAALRPGEDWIFPTYRDHGHLLARGVPLKEIMAELLGKATGPCKGRGGSMHYSDK 127

Query: 187 EHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLN 246
           E   LGG   +G  IP+A GAA   KYR         D V +AFFGDG  N G F E LN
Sbjct: 128 EKGFLGGSGIVGTQIPLAAGAALALKYRGTK------DGVAVAFFGDGATNQGDFHEALN 181

Query: 247 MAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAK 306
            AA+WKLP+VFV+ENN +AI +   R T+   I  +  A+G+PG  VDG DVL V E AK
Sbjct: 182 FAAVWKLPVVFVIENNQYAISVPRSRQTAAEIIAARAAAYGIPGVRVDGNDVLAVYEAAK 241

Query: 307 EAIERARRGEGPTLVECETYRFRGHSLADPDEL-RDPAEKARYAARDPITALKKYLIESS 365
           EA+ERAR GEGPTL+E  TYR+ GHS +D     R   E   +  RDPI  L+KYLIE+ 
Sbjct: 242 EAVERARAGEGPTLIEAVTYRYGGHSTSDDPSKYRSKEEVEEWKKRDPIVRLRKYLIEAG 301

Query: 366 LASEAELKAIEKKIDEVVEDAVEFADESAPPPRSQLLENVFAD 408
           + SE EL+AIE +    V++AVEFA+ S  P  S+L E+V+A+
Sbjct: 302 ILSEEELEAIEAEAKAEVDEAVEFAEASPYPDVSELFEDVYAE 344

Length = 358

>gnl|CDD|201386 pfam00676, E1_dh, Dehydrogenase E1 component

 Score =  367 bits (943), Expect = e-126
 Identities = 128/308 (41%), Positives = 172/308 (55%), Gaps = 11/308 (3%)

Query: 94  EDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHAL 153
             M+  R  ED    +Y R  + GF HLY GQEA+  G    L   D V+ TYRDH + L
Sbjct: 1   YRMMTLRRMEDARDALYQRKGIRGFCHLYAGQEALQVGIAAALNPGDYVIPTYRDHGNLL 60

Query: 154 SKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHN--LLGGFAFIGEGIPVATGAAFTS 211
           ++GV    VM+EL G   GC +G+GGSMH +    N    GG   +G  +P+  G A  +
Sbjct: 61  ARGVSLEQVMAELTGNEAGCSKGKGGSMHGYYAPKNNRFYGGNGIVGAQVPLGAGIALAA 120

Query: 212 KYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHL 271
           KYR +         V +  FGDG  N GQFFE LN AALWKLP++FV ENN +AI     
Sbjct: 121 KYRGK-------KEVAITLFGDGATNQGQFFEALNFAALWKLPVIFVCENNQYAISTPAE 173

Query: 272 RATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGH 331
           R+++      +   +G+PG  VDGMD L V +  K A ERAR G GPTL+E  TYR+ GH
Sbjct: 174 RSSASTTYADRARGYGIPGIRVDGMDPLAVYQAVKFAAERARTGNGPTLIELVTYRYGGH 233

Query: 332 SLADPDELRDPAE--KARYAARDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEF 389
           S++D        E  +     +DPI  LKK+L+   + SE ELK IEK++ + +E+AV+ 
Sbjct: 234 SMSDDPSTYRTREEVEEVRKKKDPIKRLKKHLVSRGVVSEEELKEIEKEVRKEIEEAVKK 293

Query: 390 ADESAPPP 397
           A+    P 
Sbjct: 294 AESDPEPN 301

This family uses thiamine pyrophosphate as a cofactor. This family includes pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate dehydrogenase. Length = 303

>gnl|CDD|215152 PLN02269, PLN02269, Pyruvate dehydrogenase E1 component subunit alpha

 Score =  306 bits (785), Expect = e-101
 Identities = 149/343 (43%), Positives = 202/343 (58%), Gaps = 18/343 (5%)

Query: 85  TKQEGLELYEDMILGRSFEDMCAQMYYRGKMF-GFVHLYNGQEAVSTGFIKLLKKEDSVV 143
           +KQE ++ + DM L R  E + A   Y+ K+  GF HLY+GQEAV+ G    + KED+++
Sbjct: 28  SKQELVDFFRDMYLMRRME-IAADSLYKAKLIRGFCHLYDGQEAVAVGMEAAITKEDAII 86

Query: 144 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 203
           + YRDH   L +G     V +EL G+  GC RG+GGSMH + K+ N  GG   +G  +P+
Sbjct: 87  TAYRDHCTHLGRGGTVLEVFAELMGRKDGCSRGKGGSMHFYKKDANFYGGHGIVGAQVPL 146

Query: 204 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 263
             G AF  KY +E       ++V  A +GDG  N GQ FE LN+AALW LP++FV ENN 
Sbjct: 147 GAGLAFAQKYNKE-------ENVAFALYGDGAANQGQLFEALNIAALWDLPVIFVCENNH 199

Query: 264 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323
           + +G +  RA   P  YK+G    +PG  VDGMDVL V++  K A E A    GP ++E 
Sbjct: 200 YGMGTAEWRAAKSPAYYKRGDY--VPGLKVDGMDVLAVKQACKFAKEHALS-NGPIVLEM 256

Query: 324 ETYRFRGHSLADPDEL---RDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKID 380
           +TYR+ GHS++DP      RD     R   RDPI  ++K L+   LA+EAELK IEK+I 
Sbjct: 257 DTYRYHGHSMSDPGSTYRTRDEISGVR-QERDPIERVRKLLLAHELATEAELKDIEKEIR 315

Query: 381 EVVEDAVEFADESAPPPRSQLLENVFADPKGFGIGPDGRYRCE 423
           + V+DAV  A ES  P  S+L  NV+   KG G+   G  R E
Sbjct: 316 KEVDDAVAKAKESPMPDPSELFTNVYV--KGLGVESYGADRKE 356

Length = 362

>gnl|CDD|213783 TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component, alpha subunit

 Score =  273 bits (700), Expect = 7e-89
 Identities = 119/327 (36%), Positives = 174/327 (53%), Gaps = 18/327 (5%)

Query: 84  ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 143
           ++ +E +ELY DM+L R F+     +  +G++ G      GQEA   G    L+K+D V 
Sbjct: 21  LSDEELVELYRDMVLTRRFDTKALALQRQGRL-GTYAPNLGQEAAQVGSALALRKDDWVF 79

Query: 144 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 203
            +YRDH   L++GVP   ++    G   G             +  N+L     IG     
Sbjct: 80  PSYRDHAAMLARGVPLVEILLYWRGDERGSW---------DPEGVNILPPNIPIGTQYLH 130

Query: 204 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 263
           A G A+  K R E       D+V + +FGDG  + G F+E LN A ++K P+VF V+NN 
Sbjct: 131 AAGVAYALKLRGE-------DNVAVTYFGDGGTSEGDFYEALNFAGVFKAPVVFFVQNNQ 183

Query: 264 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323
           WAI +   + T+ P + +K  A+G+PG  VDG DVL V  V KEA+ERAR G GPTL+E 
Sbjct: 184 WAISVPRSKQTAAPTLAQKAIAYGIPGVQVDGNDVLAVYAVTKEAVERARSGGGPTLIEA 243

Query: 324 ETYRFRGHSLAD-PDELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIDEV 382
            TYR   H+ AD P   R   E+  +  +DPI  L+KYL    L  E + +A+E++ +  
Sbjct: 244 VTYRLGPHTTADDPTRYRTKEEEEEWRKKDPILRLRKYLERKGLWDEEQEEALEEEAEAE 303

Query: 383 VEDAVEFADESAPPPRSQLLENVFADP 409
           V +AV  A    PPP   + ++V+A+ 
Sbjct: 304 VAEAVAEALALPPPPVDDIFDHVYAEL 330

Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc [Energy metabolism, Pyruvate dehydrogenase]. Length = 341

>gnl|CDD|238970 cd02012, TPP_TK, Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates

 Score = 60.2 bits (147), Expect = 3e-10
 Identities = 38/131 (29%), Positives = 57/131 (43%), Gaps = 15/131 (11%)

Query: 198 GEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP--I 255
           G+G+ VA G A   K           D+      GDG    G  +E  + A  +KL   I
Sbjct: 108 GQGLSVAVGMALAEKLLGF-------DYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLI 160

Query: 256 VFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRG 315
             V  N +   G +     ++  + KK  AFG     VDG DV ++      A+E A++ 
Sbjct: 161 AIVDSNRIQIDGPTDDILFTED-LAKKFEAFGWNVIEVDGHDVEEIL----AALEEAKKS 215

Query: 316 EG-PTLVECET 325
           +G PTL+  +T
Sbjct: 216 KGKPTLIIAKT 226

In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity. Length = 255

>gnl|CDD|238318 cd00568, TPP_enzymes, Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor

 Score = 56.5 bits (137), Expect = 1e-09
 Identities = 42/191 (21%), Positives = 60/191 (31%), Gaps = 40/191 (20%)

Query: 150 VHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLL--GGFAFIGEGIPVATGA 207
           + AL   +P  A++        G             +    L   GF  +G G+P A GA
Sbjct: 3   LAALRAALPEDAIVVN----DAGNSAYWAYRYLPLRRGRRFLTSTGFGAMGYGLPAAIGA 58

Query: 208 AFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFEC--LNMAALWKLPIVFVVENN--L 263
           A            A  D   +   GDG    G       L  A  + LP++ VV NN   
Sbjct: 59  AL-----------AAPDRPVVCIAGDG----GFMMTGQELATAVRYGLPVIVVVFNNGGY 103

Query: 264 WAIGMSHLRATSDPQIYKK---------GPAFGMPGFHVDGMDVLKVREVAKEAIERARR 314
             I M                         A+G  G  V+        ++   A+  A  
Sbjct: 104 GTIRMHQEAFYGGRVSGTDLSNPDFAALAEAYGAKGVRVE-----DPEDLEA-ALAEALA 157

Query: 315 GEGPTLVECET 325
             GP L+E +T
Sbjct: 158 AGGPALIEVKT 168

These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes. Length = 168

>gnl|CDD|235639 PRK05899, PRK05899, transketolase; Reviewed

 Score = 51.3 bits (124), Expect = 6e-07
 Identities = 39/134 (29%), Positives = 52/134 (38%), Gaps = 13/134 (9%)

Query: 198 GEGIPVATGAAFTSKYRREVLKEADC---DHVTLAFFGDGTCNNGQFFECLNMAALWKLP 254
           G+G+  A G A   KY   +         DH T    GDG    G   E  ++A   KL 
Sbjct: 121 GQGLANAVGMALAEKYLAALFNRPGLDIVDHYTYVLCGDGDLMEGISHEACSLAGHLKLG 180

Query: 255 --IVFVVENNLWAIGMSHLRATSDPQIYKKG-PAFGMPGFHVDGMDVLKVREVAKEAIER 311
             IV   +N    I +         +  KK   A+G     VDG DV  +      AIE 
Sbjct: 181 NLIVIYDDNR---ISIDGPTEGWFTEDVKKRFEAYGWHVIEVDGHDVEAI----DAAIEE 233

Query: 312 ARRGEGPTLVECET 325
           A+    PTL+  +T
Sbjct: 234 AKASTKPTLIIAKT 247

Length = 586

>gnl|CDD|232887 TIGR00232, tktlase_bact, transketolase, bacterial and yeast

 Score = 50.5 bits (121), Expect = 1e-06
 Identities = 39/137 (28%), Positives = 55/137 (40%), Gaps = 15/137 (10%)

Query: 197 IGEGIPVATGAAFTSKYRREVLKEAD---CDHVTLAFFGDGTCNNGQFFECLNMAALWKL 253
           +G+GI  A G A   K       +      DH T  F GDG    G  +E  ++A   KL
Sbjct: 112 LGQGIANAVGMAIAQKTLAATFNKPGFEIVDHYTYVFVGDGCLQEGISYEVASLAGHLKL 171

Query: 254 P--IVFVVENNLWAIGM-SHLRATSDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAI 309
              IV    N    I +   +  +    + K+  A+G     V DG D+         AI
Sbjct: 172 GKLIVLYDSNR---ISIDGAVDGSFTEDVAKRFEAYGWEVLEVEDGHDL----AAIDAAI 224

Query: 310 ERARRGEG-PTLVECET 325
           E A+  +  PTL+E  T
Sbjct: 225 EEAKASKDKPTLIEVTT 241

This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous [Energy metabolism, Pentose phosphate pathway]. Length = 653

>gnl|CDD|217223 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme, C-terminal TPP binding domain

 Score = 47.2 bits (113), Expect = 2e-06
 Identities = 39/170 (22%), Positives = 55/170 (32%), Gaps = 35/170 (20%)

Query: 170 ATGCCRGQGGSMHMFSKEHNLL--GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVT 227
             GC +      + F      L  GG   +G G+P A GA             A  D   
Sbjct: 1   DIGCHQMWAARYYRFRPPRRYLTSGGLGTMGYGLPAAIGAKL-----------ARPDRPV 49

Query: 228 LAFFGDGTCNNGQFFECLNMAALW-----KLPIVFVVENNLW---------AIGMSHLRA 273
           +A  GDG      F   +N+  L       LPI  VV NN             G      
Sbjct: 50  VAIAGDGG-----FQ--MNLQELATAVRYNLPITVVVLNNGGYGMTRGQQTPFGGGRYSG 102

Query: 274 TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323
                +     A     +   G  V    E+ +EA++ A   +GP L++ 
Sbjct: 103 PDGKDLPPVDFAKLAEAYGAKGARVESPEEL-EEALKEALEHDGPALIDV 151

Length = 151

>gnl|CDD|226468 COG3959, COG3959, Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 39/132 (29%), Positives = 57/132 (43%), Gaps = 17/132 (12%)

Query: 198 GEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP--I 255
           G+G+ VA G A  +K +          +      GDG  + GQ +E    AA +KL   I
Sbjct: 122 GQGLSVAVGMALGAKLKGS-------PYRVYVILGDGELDEGQVWEAAMTAAHYKLDNLI 174

Query: 256 VFVVENNLWAIGMSHLRATSDPQ-IYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARR 314
             V  N L   G          + +  K  AFG     VDG D+    E   EA+E+A+ 
Sbjct: 175 AIVDRNKLQLDG--ETEEIMPKEPLADKWEAFGWEVIEVDGHDI----EEIVEALEKAKG 228

Query: 315 GEG-PTLVECET 325
            +G PT++  +T
Sbjct: 229 SKGRPTVIIAKT 240

Length = 243

>gnl|CDD|223107 COG0028, IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 33/147 (22%), Positives = 49/147 (33%), Gaps = 34/147 (23%)

Query: 192 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNM---- 247
           GG   +G G+P A GA   +  R+            +A  GDG            M    
Sbjct: 405 GGLGTMGFGLPAAIGAKLAAPDRK-----------VVAIAGDG---------GFMMNGQE 444

Query: 248 ---AALWKLPIVFVVENN--LWAIGMSHLRA--TSDPQIYKKGPAFGM--PGFHVDGMDV 298
              A  + LP+  VV NN     +                   P F      +   G+ V
Sbjct: 445 LETAVRYGLPVKIVVLNNGGYGMVRQWQELFYGGRYSGTDLGNPDFVKLAEAYGAKGIRV 504

Query: 299 LKVREVAKEAIERARRGEGPTLVECET 325
               E+ +EA+E A   +GP L++   
Sbjct: 505 ETPEEL-EEALEEALASDGPVLIDVVV 530

Length = 550

>gnl|CDD|238960 cd02002, TPP_BFDC, Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC)

 Score = 44.1 bits (105), Expect = 3e-05
 Identities = 34/149 (22%), Positives = 49/149 (32%), Gaps = 41/149 (27%)

Query: 197 IGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMA--ALW--- 251
           +G G+P A GAA            A+ D   +A  GDG+               ALW   
Sbjct: 51  LGWGLPAAVGAAL-----------ANPDRKVVAIIGDGS---------FMYTIQALWTAA 90

Query: 252 --KLPIVFVVENNL-WAI---GMSHLRATSDPQIYKKGPAFGMP---------GFHVDGM 296
              LP+  V+ NN  +      +  +      +    G     P          F V+  
Sbjct: 91  RYGLPVTVVILNNRGYGALRSFLKRVGPEGPGENAPDGLDLLDPGIDFAAIAKAFGVEAE 150

Query: 297 DVLKVREVAKEAIERARRGEGPTLVECET 325
            V    E+  EA+  A    GP L+E   
Sbjct: 151 RVETPEELD-EALREALAEGGPALIEVVV 178

P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors. Length = 178

>gnl|CDD|238973 cd02015, TPP_AHAS, Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS

 Score = 44.0 bits (105), Expect = 3e-05
 Identities = 39/149 (26%), Positives = 57/149 (38%), Gaps = 41/149 (27%)

Query: 192 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDG----TCNNGQFFECLNM 247
           GG   +G G+P A GA             A  D   +   GDG              L  
Sbjct: 47  GGLGTMGFGLPAAIGAKV-----------ARPDKTVICIDGDGSFQMNIQE------LAT 89

Query: 248 AALWKLPIVFVVENNLWAIGM-------------SHLRATSDPQIYKKGPAFGMPGFHVD 294
           AA + LP+  V+ NN   +GM             SH    S+P   K   A+G+ G  V+
Sbjct: 90  AAQYNLPVKIVILNNGS-LGMVRQWQELFYEGRYSHTTLDSNPDFVKLAEAYGIKGLRVE 148

Query: 295 GMDVLKVREVAKEAIERARRGEGPTLVEC 323
                K  E+ + A++ A   +GP L++ 
Sbjct: 149 -----KPEEL-EAALKEALASDGPVLLDV 171

AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD. Length = 186

>gnl|CDD|238962 cd02004, TPP_BZL_OCoD_HPCL, Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL)

 Score = 42.5 bits (101), Expect = 9e-05
 Identities = 38/153 (24%), Positives = 47/153 (30%), Gaps = 45/153 (29%)

Query: 192 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCN-NGQFFECLNMAAL 250
           G F  +G G+  A  AA            A  D   +   GDG    +G   E    A  
Sbjct: 45  GTFGTLGVGLGYAIAAAL-----------ARPDKRVVLVEGDGAFGFSGMELE---TAVR 90

Query: 251 WKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGP------------------AFGMPGFH 292
           + LPIV VV NN             D Q    G                   AFG  G  
Sbjct: 91  YNLPIVVVVGNN-GGWYQG-----LDGQQLSYGLGLPVTTLLPDTRYDLVAEAFGGKGEL 144

Query: 293 VDGMDVLKVREVAKEAIERARRGEGPTLVECET 325
           V   + L      K A++RA     P L+    
Sbjct: 145 VTTPEEL------KPALKRALASGKPALINVII 171

Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity. Length = 172

>gnl|CDD|223100 COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]

 Score = 43.0 bits (102), Expect = 3e-04
 Identities = 37/139 (26%), Positives = 56/139 (40%), Gaps = 21/139 (15%)

Query: 198 GEGIPVATGAAFTSKYRREVLKEAD---CDHVTLAFFGDGTCNNGQFFECLNMAALWKLP 254
           G+G+  A G A   K+   +         DH T    GDG    G   E  ++A   KL 
Sbjct: 119 GQGLANAVGMALAEKHLAALFNRPGFDIVDHYTYVLVGDGCLMEGVSHEAASLAGHLKLG 178

Query: 255 --IVFVVENNLWAIGM-SHLRATSDPQIYKKGPAFGMPGFHV----DGMDVLKVREVAKE 307
             IV    N+   I +      +    + K+  A+   G++V    DG D+    E   +
Sbjct: 179 KLIVLYDSND---ISIDGDTSLSFTEDVAKRFEAY---GWNVIRVIDGHDL----EAIDK 228

Query: 308 AIERARRGEG-PTLVECET 325
           AIE A+     PTL+  +T
Sbjct: 229 AIEEAKASTDKPTLIIVKT 247

Length = 663

>gnl|CDD|238963 cd02005, TPP_PDC_IPDC, Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC)

 Score = 41.0 bits (97), Expect = 3e-04
 Identities = 37/143 (25%), Positives = 53/143 (37%), Gaps = 39/143 (27%)

Query: 197 IGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDG----TCNNGQFFECLNMAALWK 252
           IG  +P A GAA  +  RR            +   GDG    T       E   M   + 
Sbjct: 52  IGYSVPAALGAALAAPDRR-----------VILLVGDGSFQMTVQ-----ELSTMIR-YG 94

Query: 253 L-PIVFVVENNLWAIGMSHLRATSDPQI---------YKKGP-AFGMPGFHVDGMDVLKV 301
           L PI+F++ N+ + I     RA   P+          Y K P  FG  G       V   
Sbjct: 95  LNPIIFLINNDGYTI----ERAIHGPEASYNDIANWNYTKLPEVFG-GGGGGLSFRVKTE 149

Query: 302 REVAKEAIERAR-RGEGPTLVEC 323
            E+  EA++ A    +  +L+E 
Sbjct: 150 GELD-EALKDALFNRDKLSLIEV 171

PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors. Length = 183

>gnl|CDD|236076 PRK07710, PRK07710, acetolactate synthase catalytic subunit; Reviewed

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 37/149 (24%), Positives = 55/149 (36%), Gaps = 41/149 (27%)

Query: 192 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDG----TCNNGQFFECLNM 247
           GG   +G G+P A GA             A  D   +A  GDG    T       + L+ 
Sbjct: 421 GGLGTMGFGLPAAIGAQL-----------AKPDETVVAIVGDGGFQMTLQELSVIKELS- 468

Query: 248 AALWKLPIVFVVENNLWAIGM-------------SHLRATSDPQIYKKGPAFGMPGFHVD 294
                LP+  V+ NN  A+GM             SH   +  P   K   A+G+ G  + 
Sbjct: 469 -----LPVKVVILNNE-ALGMVRQWQEEFYNQRYSHSLLSCQPDFVKLAEAYGIKGVRI- 521

Query: 295 GMDVLKVREVAKEAIERARRGEGPTLVEC 323
                     AKE ++ A   + P +++C
Sbjct: 522 -----DDELEAKEQLQHAIELQEPVVIDC 545

Length = 571

>gnl|CDD|235931 PRK07092, PRK07092, benzoylformate decarboxylase; Reviewed

 Score = 42.2 bits (100), Expect = 5e-04
 Identities = 40/146 (27%), Positives = 59/146 (40%), Gaps = 35/146 (23%)

Query: 192 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALW 251
           GG  +   G+P A G A     RR            +   GDG+       + L  AA  
Sbjct: 407 GGLGY---GLPAAVGVALAQPGRR-----------VIGLIGDGSAMYS--IQALWSAAQL 450

Query: 252 KLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGM--PGFHVD--------GMDVLKV 301
           KLP+ FV+ NN        LR  +   ++      G+  PG  +D        G + ++V
Sbjct: 451 KLPVTFVILNNG---RYGALRWFA--PVFGVRDVPGLDLPG--LDFVALARGYGCEAVRV 503

Query: 302 REVA--KEAIERARRGEGPTLVECET 325
            + A   +A+ RA   +GP LVE E 
Sbjct: 504 SDAAELADALARALAADGPVLVEVEV 529

Length = 530

>gnl|CDD|144157 pfam00456, Transketolase_N, Transketolase, thiamine diphosphate binding domain

 Score = 40.9 bits (96), Expect = 8e-04
 Identities = 46/146 (31%), Positives = 61/146 (41%), Gaps = 23/146 (15%)

Query: 197 IGEGIPVATGAA-----FTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALW 251
           +G+GI  A G A       + Y R      D  H T  F GDG    G   E  ++A   
Sbjct: 114 LGQGIANAVGMAIAEANLAATYNRPGFDIVD--HYTYVFLGDGCLMEGVSSEASSLAGHL 171

Query: 252 KLP--IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHV----DGMDVLKVREVA 305
           KL   I F  +N +   G + +  T D    K+  A+   G+HV    DG DV    E  
Sbjct: 172 KLGNLIAFYDDNRISIDGETEISFTED--TAKRFEAY---GWHVIEVEDGHDV----EAI 222

Query: 306 KEAIERARRGEG-PTLVECETYRFRG 330
             AIE A+  +  PTL+ C T    G
Sbjct: 223 AAAIEEAKAEKDKPTLIICRTVIGYG 248

This family includes transketolase enzymes EC:2.2.1.1. and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit EC:1.2.4.4. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis. Length = 333

>gnl|CDD|238972 cd02014, TPP_POX, Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions

 Score = 38.7 bits (91), Expect = 0.002
 Identities = 40/175 (22%), Positives = 60/175 (34%), Gaps = 50/175 (28%)

Query: 178 GGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDG--T 235
           G    + S      G  A +G G+P A  A       R+V+          A  GDG   
Sbjct: 40  GKQRFILS------GLLATMGNGLPGAIAAKLAYP-DRQVI----------ALSGDGGFA 82

Query: 236 CNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHL--RATSDPQIY---------KKGP 284
              G        A  + LP++ VV NN   +G           P+           K   
Sbjct: 83  MLMGDLI----TAVKYNLPVIVVVFNNS-DLGFIKWEQEVMGQPEFGVDLPNPDFAKIAE 137

Query: 285 AFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDEL 339
           A G+ G  V+  D L      + A++ A   +GP +++  T         DP+E 
Sbjct: 138 AMGIKGIRVEDPDEL------EAALDEALAADGPVVIDVVT---------DPNEP 177

POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors. Length = 178

>gnl|CDD|238965 cd02007, TPP_DXS, Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis

 Score = 38.7 bits (91), Expect = 0.002
 Identities = 32/134 (23%), Positives = 52/134 (38%), Gaps = 24/134 (17%)

Query: 201 IPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVE 260
           I  A G A     + +           +A  GDG    G  FE LN A   K  ++ ++ 
Sbjct: 81  ISAALGMAVARDLKGK-------KRKVIAVIGDGALTGGMAFEALNNAGYLKSNMIVILN 133

Query: 261 NNLWAIGMSHLRATSDPQIYKKGPAFGMPGFH----VDGMDVLKVREVAKEAIERARRGE 316
           +N     MS       P +   G  F   GF     VDG ++  + +V    ++  +  +
Sbjct: 134 DN----EMS-----ISPNVGTPGNLFEELGFRYIGPVDGHNIEALIKV----LKEVKDLK 180

Query: 317 GPTLVECETYRFRG 330
           GP L+   T + +G
Sbjct: 181 GPVLLHVVTKKGKG 194

Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6). Length = 195

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	434
PLN02374	433	pyruvate dehydrogenase (acetyl-transferring)	100.0
COG1071	358	AcoA Pyruvate/2-oxoglutarate dehydrogenase complex	100.0
PLN02269	362	Pyruvate dehydrogenase E1 component subunit alpha	100.0
KOG0225	394	consensus Pyruvate dehydrogenase E1, alpha subunit	100.0
CHL00149	341	odpA pyruvate dehydrogenase E1 component alpha sub	100.0
TIGR03182	315	PDH_E1_alph_y pyruvate dehydrogenase E1 component,	100.0
TIGR03181	341	PDH_E1_alph_x pyruvate dehydrogenase E1 component,	100.0
cd02000	293	TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP)	100.0
PF00676	300	E1_dh: Dehydrogenase E1 component; InterPro: IPR00	100.0
KOG1182	432	consensus Branched chain alpha-keto acid dehydroge	100.0
PRK09404	924	sucA 2-oxoglutarate dehydrogenase E1 component; Re	100.0
TIGR00239	929	2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 compon	100.0
cd02016	265	TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) fami	100.0
PRK12270	1228	kgd alpha-ketoglutarate decarboxylase; Reviewed	100.0
KOG0450	1017	consensus 2-oxoglutarate dehydrogenase, E1 subunit	100.0
PRK12315	581	1-deoxy-D-xylulose-5-phosphate synthase; Provision	100.0
COG0567	906	SucA 2-oxoglutarate dehydrogenase complex, dehydro	100.0
KOG0451	913	consensus Predicted 2-oxoglutarate dehydrogenase,	100.0
PRK12754	663	transketolase; Reviewed	99.94
TIGR00232	653	tktlase_bact transketolase, bacterial and yeast. T	99.93
COG0021	663	TktA Transketolase [Carbohydrate transport and met	99.93
PRK12753	663	transketolase; Reviewed	99.92
PLN02790	654	transketolase	99.92
PTZ00089	661	transketolase; Provisional	99.92
cd02012	255	TPP_TK Thiamine pyrophosphate (TPP) family, Transk	99.9
cd02007	195	TPP_DXS Thiamine pyrophosphate (TPP) family, DXS s	99.89
PF00456	332	Transketolase_N: Transketolase, thiamine diphospha	99.89
COG3959	243	Transketolase, N-terminal subunit [Carbohydrate tr	99.88
TIGR00204	617	dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP s	99.88
PRK05444	580	1-deoxy-D-xylulose-5-phosphate synthase; Provision	99.88
cd02017	386	TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) fam	99.88
PRK05899	624	transketolase; Reviewed	99.88
cd02011	227	TPP_PK Thiamine pyrophosphate (TPP) family, Phosph	99.87
TIGR03186	889	AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. S	99.87
PRK12571	641	1-deoxy-D-xylulose-5-phosphate synthase; Provision	99.85
TIGR00759	885	aceE pyruvate dehydrogenase E1 component, homodime	99.85
PLN02582	677	1-deoxy-D-xylulose-5-phosphate synthase	99.84
PLN02234	641	1-deoxy-D-xylulose-5-phosphate synthase	99.84
PRK11864	300	2-ketoisovalerate ferredoxin oxidoreductase subuni	99.83
cd02013	196	TPP_Xsc_like Thiamine pyrophosphate (TPP) family,	99.82
cd02006	202	TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl s	99.82
PRK13012	896	2-oxoacid dehydrogenase subunit E1; Provisional	99.81
cd02004	172	TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) fam	99.8
PRK09405	891	aceE pyruvate dehydrogenase subunit E1; Reviewed	99.8
cd02015	186	TPP_AHAS Thiamine pyrophosphate (TPP) family, Acet	99.79
cd02002	178	TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC	99.77
cd00568	168	TPP_enzymes Thiamine pyrophosphate (TPP) enzyme fa	99.77
COG1154	627	Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme m	99.77
PF13292	270	DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate syn	99.77
PRK05261	785	putative phosphoketolase; Provisional	99.75
cd02008	178	TPP_IOR_alpha Thiamine pyrophosphate (TPP) family,	99.75
cd02014	178	TPP_POX Thiamine pyrophosphate (TPP) family, Pyruv	99.74
cd02003	205	TPP_IolD Thiamine pyrophosphate (TPP) family, IolD	99.74
cd03372	179	TPP_ComE Thiamine pyrophosphate (TPP) family, ComE	99.73
cd02010	177	TPP_ALS Thiamine pyrophosphate (TPP) family, Aceto	99.73
KOG0523	632	consensus Transketolase [Carbohydrate transport an	99.72
PF02775	153	TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-ter	99.72
PRK06163	202	hypothetical protein; Provisional	99.72
TIGR01504	588	glyox_carbo_lig glyoxylate carboligase. Glyoxylate	99.71
cd02005	183	TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family,	99.7
COG0028	550	IlvB Thiamine pyrophosphate-requiring enzymes [ace	99.7
PLN02225	701	1-deoxy-D-xylulose-5-phosphate synthase	99.7
cd03371	188	TPP_PpyrDC Thiamine pyrophosphate (TPP) family, Pp	99.7
cd02009	175	TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) fa	99.7
cd02001	157	TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) famil	99.69
PRK06154	565	hypothetical protein; Provisional	99.69
TIGR03846	181	sulfopy_beta sulfopyruvate decarboxylase, beta sub	99.69
cd03375	193	TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-o	99.68
PRK07525	588	sulfoacetaldehyde acetyltransferase; Validated	99.68
PRK12474	518	hypothetical protein; Provisional	99.68
PRK07586	514	hypothetical protein; Validated	99.68
PRK11269	591	glyoxylate carboligase; Provisional	99.68
PRK07979	574	acetolactate synthase 3 catalytic subunit; Validat	99.68
TIGR03457	579	sulphoacet_xsc sulfoacetaldehyde acetyltransferase	99.67
PRK07524	535	hypothetical protein; Provisional	99.67
PRK07418	616	acetolactate synthase 3 catalytic subunit; Reviewe	99.67
PRK06725	570	acetolactate synthase 3 catalytic subunit; Validat	99.67
PRK09107	595	acetolactate synthase 3 catalytic subunit; Validat	99.67
PRK07092	530	benzoylformate decarboxylase; Reviewed	99.67
PRK05858	542	hypothetical protein; Provisional	99.66
TIGR02418	539	acolac_catab acetolactate synthase, catabolic. Ace	99.66
PRK08979	572	acetolactate synthase 3 catalytic subunit; Validat	99.66
PRK06965	587	acetolactate synthase 3 catalytic subunit; Validat	99.66
PRK08327	569	acetolactate synthase catalytic subunit; Validated	99.66
PRK08527	563	acetolactate synthase 3 catalytic subunit; Validat	99.65
PRK06546	578	pyruvate dehydrogenase; Provisional	99.65
TIGR03393	539	indolpyr_decarb indolepyruvate decarboxylase, Erwi	99.65
PRK06466	574	acetolactate synthase 3 catalytic subunit; Validat	99.64
PRK07710	571	acetolactate synthase catalytic subunit; Reviewed	99.64
PRK08266	542	hypothetical protein; Provisional	99.64
PRK08617	552	acetolactate synthase; Reviewed	99.64
PRK09124	574	pyruvate dehydrogenase; Provisional	99.64
cd03376	235	TPP_PFOR_porB_like Thiamine pyrophosphate (TPP fam	99.64
PRK08273	597	thiamine pyrophosphate protein; Provisional	99.64
TIGR02720	575	pyruv_oxi_spxB pyruvate oxidase. Members of this f	99.64
CHL00099	585	ilvB acetohydroxyacid synthase large subunit	99.64
PRK06048	561	acetolactate synthase 3 catalytic subunit; Reviewe	99.64
PRK07064	544	hypothetical protein; Provisional	99.63
PRK06112	578	acetolactate synthase catalytic subunit; Validated	99.63
PRK06456	572	acetolactate synthase catalytic subunit; Reviewed	99.63
PLN02470	585	acetolactate synthase	99.63
PRK06882	574	acetolactate synthase 3 catalytic subunit; Validat	99.63
PRK08155	564	acetolactate synthase catalytic subunit; Validated	99.63
PRK06457	549	pyruvate dehydrogenase; Provisional	99.63
PRK08611	576	pyruvate oxidase; Provisional	99.62
PRK08199	557	thiamine pyrophosphate protein; Validated	99.62
PRK08322	547	acetolactate synthase; Reviewed	99.62
PRK08978	548	acetolactate synthase 2 catalytic subunit; Reviewe	99.62
PRK05778	301	2-oxoglutarate ferredoxin oxidoreductase subunit b	99.62
TIGR00118	558	acolac_lg acetolactate synthase, large subunit, bi	99.61
PRK07282	566	acetolactate synthase catalytic subunit; Reviewed	99.61
PLN02573	578	pyruvate decarboxylase	99.6
PRK09628	277	oorB 2-oxoglutarate-acceptor oxidoreductase subuni	99.6
PRK07789	612	acetolactate synthase 1 catalytic subunit; Validat	99.6
TIGR03394	535	indol_phenyl_DC indolepyruvate/phenylpyruvate deca	99.58
TIGR03254	554	oxalate_oxc oxalyl-CoA decarboxylase. In a number	99.56
PRK06276	586	acetolactate synthase catalytic subunit; Reviewed	99.56
PRK09259	569	putative oxalyl-CoA decarboxylase; Validated	99.55
PRK11869	280	2-oxoacid ferredoxin oxidoreductase subunit beta;	99.54
TIGR03297	361	Ppyr-DeCO2ase phosphonopyruvate decarboxylase. Thi	99.54
cd02018	237	TPP_PFOR Thiamine pyrophosphate (TPP family), Pyru	99.54
PRK11866	279	2-oxoacid ferredoxin oxidoreductase subunit beta;	99.53
PRK11867	286	2-oxoglutarate ferredoxin oxidoreductase subunit b	99.52
COG2609	887	AceE Pyruvate dehydrogenase complex, dehydrogenase	99.5
PRK07449	568	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1	99.48
TIGR02177	287	PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta	99.48
TIGR03336	595	IOR_alpha indolepyruvate ferredoxin oxidoreductase	99.44
PRK11865	299	pyruvate ferredoxin oxidoreductase subunit beta; P	99.43
COG3961	557	Pyruvate decarboxylase and related thiamine pyroph	99.37
KOG4166	675	consensus Thiamine pyrophosphate-requiring enzyme	99.34
KOG1185	571	consensus Thiamine pyrophosphate-requiring enzyme	99.28
PLN02980	1655	2-oxoglutarate decarboxylase/ hydro-lyase/ magnesi	99.28
PF09364	379	XFP_N: XFP N-terminal domain; InterPro: IPR018970	99.18
COG3962	617	Acetolactate synthase [Amino acid transport and me	99.13
COG3960	592	Glyoxylate carboligase [General function predictio	99.05
KOG1184	561	consensus Thiamine pyrophosphate-requiring enzyme	98.85
COG1013	294	PorB Pyruvate:ferredoxin oxidoreductase and relate	98.81
cd03377	365	TPP_PFOR_PNO Thiamine pyrophosphate (TPP family),	98.52
COG3957	793	Phosphoketolase [Carbohydrate transport and metabo	98.27
COG4231	640	Indolepyruvate ferredoxin oxidoreductase, alpha an	98.0
COG1165	566	MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-car	97.42
TIGR02176	1165	pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxid	97.37
PRK13030	1159	2-oxoacid ferredoxin oxidoreductase; Provisional	97.34
PRK09193	1165	indolepyruvate ferredoxin oxidoreductase; Validate	97.19
PRK13029	1186	2-oxoacid ferredoxin oxidoreductase; Provisional	96.95
cd06586	154	TPP_enzyme_PYR Pyrimidine (PYR) binding domain of	96.21
cd07039	164	TPP_PYR_POX Pyrimidine (PYR) binding domain of POX	96.15
PF02776	172	TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-ter	96.0
cd07035	155	TPP_PYR_POX_like Pyrimidine (PYR) binding domain o	95.86
TIGR03845	157	sulfopyru_alph sulfopyruvate decarboxylase, alpha	95.7
cd07038	162	TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding dom	95.52
cd07034	160	TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) bindi	95.34
PRK08659	376	2-oxoglutarate ferredoxin oxidoreductase subunit a	94.26
PRK07119	352	2-ketoisovalerate ferredoxin reductase; Validated	94.17
cd07037	162	TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-	94.15
PRK08611	576	pyruvate oxidase; Provisional	92.93
TIGR03297	361	Ppyr-DeCO2ase phosphonopyruvate decarboxylase. Thi	92.71
TIGR03710	562	OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha s	92.21
PRK08366	390	vorA 2-ketoisovalerate ferredoxin oxidoreductase s	91.87
TIGR03254	554	oxalate_oxc oxalyl-CoA decarboxylase. In a number	91.86
PRK07064	544	hypothetical protein; Provisional	91.8
TIGR03457	579	sulphoacet_xsc sulfoacetaldehyde acetyltransferase	91.77
PRK06112	578	acetolactate synthase catalytic subunit; Validated	91.72
PRK06457	549	pyruvate dehydrogenase; Provisional	91.71
PRK07525	588	sulfoacetaldehyde acetyltransferase; Validated	91.36
PRK06456	572	acetolactate synthase catalytic subunit; Reviewed	91.31
COG0028	550	IlvB Thiamine pyrophosphate-requiring enzymes [ace	91.27
PRK09627	375	oorA 2-oxoglutarate-acceptor oxidoreductase subuni	91.24
PRK07979	574	acetolactate synthase 3 catalytic subunit; Validat	91.14
PRK08978	548	acetolactate synthase 2 catalytic subunit; Reviewe	91.1
PRK09259	569	putative oxalyl-CoA decarboxylase; Validated	91.01
PF01855	230	POR_N: Pyruvate flavodoxin/ferredoxin oxidoreducta	90.85
PRK07524	535	hypothetical protein; Provisional	90.81
PRK06466	574	acetolactate synthase 3 catalytic subunit; Validat	90.68
PRK06725	570	acetolactate synthase 3 catalytic subunit; Validat	90.67
PRK07418	616	acetolactate synthase 3 catalytic subunit; Reviewe	90.52
PRK07586	514	hypothetical protein; Validated	90.47
PLN02470	585	acetolactate synthase	90.43
PRK07789	612	acetolactate synthase 1 catalytic subunit; Validat	90.33
PRK08322	547	acetolactate synthase; Reviewed	90.1
TIGR01504	588	glyox_carbo_lig glyoxylate carboligase. Glyoxylate	89.99
PRK08155	564	acetolactate synthase catalytic subunit; Validated	89.97
PRK06276	586	acetolactate synthase catalytic subunit; Reviewed	89.94
PRK08266	542	hypothetical protein; Provisional	89.88
PRK07710	571	acetolactate synthase catalytic subunit; Reviewed	89.85
TIGR00118	558	acolac_lg acetolactate synthase, large subunit, bi	89.82
PRK09107	595	acetolactate synthase 3 catalytic subunit; Validat	89.72
PRK06882	574	acetolactate synthase 3 catalytic subunit; Validat	89.71
PRK08199	557	thiamine pyrophosphate protein; Validated	89.53
PRK08273	597	thiamine pyrophosphate protein; Provisional	89.41
PRK12474	518	hypothetical protein; Provisional	89.29
PRK08979	572	acetolactate synthase 3 catalytic subunit; Validat	89.28
TIGR03394	535	indol_phenyl_DC indolepyruvate/phenylpyruvate deca	89.28
PRK06965	587	acetolactate synthase 3 catalytic subunit; Validat	88.77
cd07033	156	TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domai	88.6
PRK06048	561	acetolactate synthase 3 catalytic subunit; Reviewe	88.44
PRK07282	566	acetolactate synthase catalytic subunit; Reviewed	88.43
PRK11269	591	glyoxylate carboligase; Provisional	88.31
PRK09124	574	pyruvate dehydrogenase; Provisional	88.16
PRK05858	542	hypothetical protein; Provisional	88.02
PRK08527	563	acetolactate synthase 3 catalytic subunit; Validat	87.84
COG0674	365	PorA Pyruvate:ferredoxin oxidoreductase and relate	87.83
TIGR02720	575	pyruv_oxi_spxB pyruvate oxidase. Members of this f	87.33
PRK08617	552	acetolactate synthase; Reviewed	86.89
PRK07092	530	benzoylformate decarboxylase; Reviewed	86.78
CHL00099	585	ilvB acetohydroxyacid synthase large subunit	86.65
PRK09622	407	porA pyruvate flavodoxin oxidoreductase subunit al	86.44
TIGR02418	539	acolac_catab acetolactate synthase, catabolic. Ace	86.43
PRK08327	569	acetolactate synthase catalytic subunit; Validated	86.43
PRK08367	394	porA pyruvate ferredoxin oxidoreductase subunit al	86.4
PLN02573	578	pyruvate decarboxylase	84.56
PRK06546	578	pyruvate dehydrogenase; Provisional	84.27
cd01460	266	vWA_midasin VWA_Midasin: Midasin is a member of th	83.82
PRK06154	565	hypothetical protein; Provisional	82.68
TIGR00173	432	menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohex	81.53
KOG4166	675	consensus Thiamine pyrophosphate-requiring enzyme	80.01

>PLN02374 pyruvate dehydrogenase (acetyl-transferring)

Probab=100.00  E-value=8.9e-95  Score=747.72  Aligned_cols=432  Identities=84%  Similarity=1.293  Sum_probs=402.9

Q ss_pred             CcccccccccccccccCCcCCCCCCCCCCCCCCCCCCcccccccceeeccCCCCCCCccccchhhhHHHHHHHhhcC-Cc
Q 013928            1 MATAYSSAKFVQPLSLNSTINGRSRDNSLFDPLKTGTSFLGSTRKLRVNSVHSNQGNVRRRLPVVAVSEVVKEKKVK-SI   79 (434)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~   79 (434)
                      |+++|+.+++.+++|.+++. .+....+++.+.+.+++|+|++|+++.....+++ |.+++..+.++...+...... +.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~   78 (433)
T PLN02374          1 MAAAFAATSLLVPVPARSSR-DDAPSSPLRGALKRSSAFTGSTSKLSSLRGLNAA-NGRRRSTVVAVSAVVKEKNSKASA   78 (433)
T ss_pred             CccccccccccccccccccC-CCCCCCccccccccchhhhccccccccccCcccc-ccchhcchhcccccccccCCCCCC
Confidence            78899999999999999986 6777788999999999999999997665555555 788888887777766311111 22


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcCCCCEEEccCcchHHHHHcCCCH
Q 013928           80 SNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPA  159 (434)
Q Consensus        80 ~~~~~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~~~D~v~~~yR~~~~~La~G~~~  159 (434)
                      .++.+++|+++++|++|+++|.||+++.++|++|+++|++|+++||||+++|++.+|+++||++++||+|+++|++|+++
T Consensus        79 ~~~~ls~e~ll~lyr~M~~~R~fEe~~~~l~~~Gki~g~~h~~~GqEA~~vg~~~aL~~~D~v~~~yR~h~~~La~G~~~  158 (433)
T PLN02374         79 SDLLVTREEGLELYEDMVLGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKDDSVVSTYRDHVHALSKGVPA  158 (433)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceeccCCCCCcHHHHHHHHHHcCCCCEEEccCcChHHhhhcCCCH
Confidence            45688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCccCCCCCcccccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccc
Q 013928          160 RAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNG  239 (434)
Q Consensus       160 ~~i~~el~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G  239 (434)
                      .++|+|++|+.+|+++|++|+||++++++++.+.+++||+++|.|+|+|+|.|+++...+...++++|||++|||++++|
T Consensus       159 ~~~mael~Gk~~g~~~GrggsmH~~~~~~~~~g~~g~lG~~lP~AvGaA~A~k~~~~~~~~~~~~~vvv~~~GDGa~~eG  238 (433)
T PLN02374        159 RAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCNNG  238 (433)
T ss_pred             HHHHHHHcCCCCCCCCCCCCcCccCchhhCCCCCceeccCchhHHHHHHHHHHHhhccccccCCCCEEEEEECCCccccC
Confidence            99999999999999999999999999999999999999999999999999999986443333568899999999999999


Q ss_pred             hHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCE
Q 013928          240 QFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPT  319 (434)
Q Consensus       240 ~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~  319 (434)
                      .|||+||+|+.|+|||||||+||+|+|+++...++..+++++++++||+++++|||+|+.+|++++++|+++++++++|+
T Consensus       239 ~f~EaLn~A~~~~LPvIfVV~NN~yaig~~~~~~t~~~dia~~A~a~G~~~~~VDG~D~~av~~a~~~A~~~Ar~g~gP~  318 (433)
T PLN02374        239 QFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVREVAKEAIERARRGEGPT  318 (433)
T ss_pred             hHHHHHHHHHHhCCCEEEEEeCCCEeecceeeeccCCCCHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHHHHHcCCCE
Confidence            99999999999999999999999999999988887788999999999999999999999999999999999999999999


Q ss_pred             EEEEEEecCCCCCCCCCCCCCCHHHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcc
Q 013928          320 LVECETYRFRGHSLADPDELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPPRS  399 (434)
Q Consensus       320 lIev~t~R~~gHs~~D~~~yR~~~e~~~~~~~DPl~~~~~~L~~~G~~te~e~~~i~~e~~~~v~~a~~~A~~~p~p~~~  399 (434)
                      |||+.|||++||+++|++.||+++|+++|.++|||.+|+++|+++|++|++++++|+++++++|++++++|+++|.|+++
T Consensus       319 LIe~~tyR~~GHs~~D~~~YR~~~e~~~~~~~DPi~~~~~~L~~~gi~te~e~~~i~~~~~~~v~~a~~~A~~~p~P~~~  398 (433)
T PLN02374        319 LVECETYRFRGHSLADPDELRDPAEKAHYAARDPIAALKKYLIENGLATEAELKAIEKKIDEVVEDAVEFADASPLPPRS  398 (433)
T ss_pred             EEEEEEEecCCcCCCCccccCCHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcccCCCCCCCCCCCCcccccCCCcccccCCC
Q 013928          400 QLLENVFADPKGFGIGPDGRYRCEDPKFTEGTAHV  434 (434)
Q Consensus       400 ~l~~~vya~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (434)
                      ++|++||+++++++|+|||+|+||+|+||+|||+|
T Consensus       399 ~~~~~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (433)
T PLN02374        399 QLLENVFADPKGFGIGPDGRYRCEDPKFTAGTAQV  433 (433)
T ss_pred             HHHhccccCCcCCccCCCcceeccCCCcccccccC
Confidence            99999999999999999999999999999999997

>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]

Probab=100.00  E-value=1.5e-84  Score=650.22  Aligned_cols=325  Identities=50%  Similarity=0.817  Sum_probs=313.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcCCC-CEEEccCcchHHHHHcCCCHH
Q 013928           82 LLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKE-DSVVSTYRDHVHALSKGVPAR  160 (434)
Q Consensus        82 ~~~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~~~-D~v~~~yR~~~~~La~G~~~~  160 (434)
                      ..+++++++++|++|+++|.||+++.+++++||+.||+|++.||||+++|++.+|+++ ||++|+||+|+++|++|+++.
T Consensus        22 ~~~~~~~l~~~y~~M~l~R~fd~k~~~l~r~G~i~gf~~~~~GqEA~~vg~~~aL~~~~D~i~~~YR~h~~~l~~G~~~~  101 (358)
T COG1071          22 AALSKEELLELYRLMLLIRRFDEKMLQLQRQGKIGGFYHLYIGQEAVQVGAAAALRPGEDWIFPTYRDHGHLLARGVPLK  101 (358)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCcCCcccHHHHHHHHHHhcCCCCCEeecccCccccceecCCCHH
Confidence            4689999999999999999999999999999999999999999999999999999965 999999999999999999999


Q ss_pred             HHHHHHhcCCCCCccCCCCCcccccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccch
Q 013928          161 AVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQ  240 (434)
Q Consensus       161 ~i~~el~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~  240 (434)
                      ++|++++|+.+|+|+|++|+||+++++.++.+.++++|.|+|.|+|+|+|.|+++      ..+.+++|++|||++++|+
T Consensus       102 ~~~a~~~G~~~g~~kGr~~~~h~~~~~~~~~~~~~iVg~Q~~~AaG~A~a~k~~~------~~~~Va~~~~GDGat~qG~  175 (358)
T COG1071         102 EIMAELLGKATGPCKGRGGSMHYSDKEKGFLGGSGIVGTQIPLAAGAALALKYRG------TKDGVAVAFFGDGATNQGD  175 (358)
T ss_pred             HHHHHHhccccCCCCCCCCcccccccccccCCCCceecccccHHHHHHHHHHHhC------CCCcEEEEEecCCccccch
Confidence            9999999999999999999999999999999999999999999999999999983      1445999999999999999


Q ss_pred             HHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEE
Q 013928          241 FFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTL  320 (434)
Q Consensus       241 ~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~l  320 (434)
                      |||+||+|+.|+|||||||+||+|+||++...+...+.+..++.+||+|+++|||+|+.+|++++++|++++|+++||+|
T Consensus       176 FhEalN~A~v~klPvvf~ieNN~yAiSvp~~~q~~~~~~~~ra~aygipgv~VDG~D~~avy~~~~~A~e~AR~g~GPtL  255 (358)
T COG1071         176 FHEALNFAAVWKLPVVFVIENNQYAISVPRSRQTAAEIIAARAAAYGIPGVRVDGNDVLAVYEAAKEAVERARAGEGPTL  255 (358)
T ss_pred             HHHHHHHHHHhcCCEEEEEecCCceeecchhhcccchhHHhhhhccCCCeEEECCcCHHHHHHHHHHHHHHHHcCCCCEE
Confidence            99999999999999999999999999988887877777888999999999999999999999999999999999999999


Q ss_pred             EEEEEecCCCCCCCCC-CCCCCHHHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcc
Q 013928          321 VECETYRFRGHSLADP-DELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPPRS  399 (434)
Q Consensus       321 Iev~t~R~~gHs~~D~-~~yR~~~e~~~~~~~DPl~~~~~~L~~~G~~te~e~~~i~~e~~~~v~~a~~~A~~~p~p~~~  399 (434)
                      ||+.|||+.|||++|+ .+||+++|.++|+.+|||.+++++|++.|++|++++++|+++++++|++++++|+++|.|+++
T Consensus       256 IE~~tYR~~~HS~sDd~~~YRskeE~~~~~~~DPi~r~~~~L~~~g~~see~~~~i~~e~~~~V~ea~e~a~~~p~P~~~  335 (358)
T COG1071         256 IEAVTYRYGGHSTSDDPSKYRSKEEVEEWKKRDPIVRLRKYLIEAGILSEEELEAIEAEAKAEVDEAVEFAEASPYPDVS  335 (358)
T ss_pred             EEEEEeecCCCCCCCCccccCCHHHHHHHhccChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCChh
Confidence            9999999999999988 789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcccCCCCCC
Q 013928          400 QLLENVFADPKGF  412 (434)
Q Consensus       400 ~l~~~vya~~~~~  412 (434)
                      ++|++||++.+..
T Consensus       336 ~~~~~Vy~~~~~~  348 (358)
T COG1071         336 ELFEDVYAEGPPH  348 (358)
T ss_pred             HhhhcccccCChh
Confidence            9999999988765

>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha

Probab=100.00  E-value=1.4e-80  Score=630.42  Aligned_cols=334  Identities=43%  Similarity=0.753  Sum_probs=320.7

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcCCCCEEEccCcchHHHHHcCCCHHH
Q 013928           82 LLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARA  161 (434)
Q Consensus        82 ~~~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~~~D~v~~~yR~~~~~La~G~~~~~  161 (434)
                      ..+++++++++|+.|+++|.||+++.+++++|++.||+|++.||||+++|++.+|+++||+|++||+|+++|++|+++.+
T Consensus        25 ~~~~~~~ll~~yr~M~~~R~~e~~~~~l~~~g~i~g~~~~~~GqEA~~vg~~~aL~~~D~~~~~yR~hg~~la~G~~~~~  104 (362)
T PLN02269         25 VETSKQELVDFFRDMYLMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAVGMEAAITKEDAIITAYRDHCTHLGRGGTVLE  104 (362)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhcCCCCEEEechhhHHHHHHcCCCHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCccCCCCCcccccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchH
Q 013928          162 VMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQF  241 (434)
Q Consensus       162 i~~el~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~  241 (434)
                      +|+|++|+.+|+++|++|+||+++++.++.+.++++|.++|+|+|+|+|.|++       +.+.+++|++|||++++|.|
T Consensus       105 ~~ae~~g~~~g~~~GrggsmH~~~~~~~~~~~~~~vG~~~p~A~G~A~A~k~~-------~~~~v~v~~~GDGa~~eG~~  177 (362)
T PLN02269        105 VFAELMGRKDGCSRGKGGSMHFYKKDANFYGGHGIVGAQVPLGAGLAFAQKYN-------KEENVAFALYGDGAANQGQL  177 (362)
T ss_pred             HHHHHcCCCCCCCCCCCCcccccchhcCccccCchhhccccHHHHHHHHHHHh-------CCCCeEEEEECCCCcccCHH
Confidence            99999999999999999999999999999999999999999999999999987       56789999999999999999


Q ss_pred             HHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEE
Q 013928          242 FECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLV  321 (434)
Q Consensus       242 ~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lI  321 (434)
                      ||+||+|+.|+||+||||+||+|+++++...+...++++.++  +++|+++|||+|+++|+++++.|++++|+ ++|+||
T Consensus       178 ~Ealn~A~~~~lPvvfvveNN~~aist~~~~~~~~~~~~~~~--~~~p~~~VDG~D~~av~~a~~~A~~~aR~-~gP~lI  254 (362)
T PLN02269        178 FEALNIAALWDLPVIFVCENNHYGMGTAEWRAAKSPAYYKRG--DYVPGLKVDGMDVLAVKQACKFAKEHALS-NGPIVL  254 (362)
T ss_pred             HHHHHHhhccCcCEEEEEeCCCEeccCchhhhccchHHHHhh--cCCCeEEECCCCHHHHHHHHHHHHHHHHh-CCCEEE
Confidence            999999999999999999999999999988887777787654  67999999999999999999999999999 999999


Q ss_pred             EEEEecCCCCCCCCCC-CCCCHHHHHHHh-cCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcc
Q 013928          322 ECETYRFRGHSLADPD-ELRDPAEKARYA-ARDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPPRS  399 (434)
Q Consensus       322 ev~t~R~~gHs~~D~~-~yR~~~e~~~~~-~~DPl~~~~~~L~~~G~~te~e~~~i~~e~~~~v~~a~~~A~~~p~p~~~  399 (434)
                      |++|||++||+++|++ .||+++|++.|. ++|||.+|+++|++.|+++++++++|+++++++|++++++|+++|.|+++
T Consensus       255 e~~tyR~~gHs~~D~~~~YR~~~E~~~~~~~~DPi~~~~~~L~~~g~~te~e~~~i~~e~~~~v~~a~~~A~~~p~P~~~  334 (362)
T PLN02269        255 EMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERVRKLLLAHELATEAELKDIEKEIRKEVDDAVAKAKESPMPDPS  334 (362)
T ss_pred             EEecCcCCCcCCCCCCcccCCHHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence            9999999999999986 799999999998 58999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcccCCCCC-CCCCCCCcccccC-C
Q 013928          400 QLLENVFADPKG-FGIGPDGRYRCED-P  425 (434)
Q Consensus       400 ~l~~~vya~~~~-~~~~~~~~~~~~~-~  425 (434)
                      ++|++||+++.+ ..|++||+|+||+ |
T Consensus       335 ~~~~~vy~~~~~~~~~~~~~~~~~~~~~  362 (362)
T PLN02269        335 ELFTNVYVKGLGVESYGADRKEVRVVLP  362 (362)
T ss_pred             HHHhhcccCCCCCceecCCcceecCcCC
Confidence            999999998866 4799999999998 5

>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]

Probab=100.00  E-value=4.9e-81  Score=606.03  Aligned_cols=341  Identities=46%  Similarity=0.797  Sum_probs=329.5

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcCCCCEEEccCcchHHHHHcCCCH
Q 013928           80 SNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPA  159 (434)
Q Consensus        80 ~~~~~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~~~D~v~~~yR~~~~~La~G~~~  159 (434)
                      ....+++|+++++|++|+++|+||..+.++|++.+|+||+|++.||||+++|+-.+|.+.|.|+++||+|++.+.+|+++
T Consensus        52 ~s~~~t~ee~L~~Y~~M~~~RrmE~aad~lYK~k~IRGFCHLy~GQEAvavGme~ait~~D~iItsYR~Hg~~~~~G~S~  131 (394)
T KOG0225|consen   52 TSVELTKEEALKYYRDMQTIRRMELAADQLYKAKKIRGFCHLYDGQEAVAVGMEAAITKSDSIITSYRCHGWTYLRGVSV  131 (394)
T ss_pred             ceEEecHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhceeeeecccHHHHHHHHHHhccCCCceEEEeeeeeEEeecCccH
Confidence            44568999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCccCCCCCcccccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccc
Q 013928          160 RAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNG  239 (434)
Q Consensus       160 ~~i~~el~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G  239 (434)
                      .++|+||+|+.+|+++|.|||||++.+  +|.+++|++|.|+|.+.|+|+|.||+       ..+.+++++.|||+.+||
T Consensus       132 ~~v~aEL~Gr~~Gc~kGKGGSMHmy~k--~FyGGnGIVGAQiPLGaGia~A~kY~-------~~~~v~~alYGDGAaNQG  202 (394)
T KOG0225|consen  132 REVLAELMGRQAGCSKGKGGSMHMYAK--NFYGGNGIVGAQIPLGAGIAFAQKYN-------REDAVCFALYGDGAANQG  202 (394)
T ss_pred             HHHHHHHhccccccccCCCcceeeecc--cccCccceeccCCCccccHHHHHHhc-------cCCceEEEEeccccccch
Confidence            999999999999999999999999988  49999999999999999999999998       457899999999999999


Q ss_pred             hHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCE
Q 013928          240 QFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPT  319 (434)
Q Consensus       240 ~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~  319 (434)
                      +++|++|||.+|+||+||||+||.|+++|+..+....+++++++ .| +|+++|||+|+.+|.+|.+.|.+++++++||+
T Consensus       203 Q~fEa~NMA~LW~LP~IFvCENN~yGMGTs~~Rasa~teyykRG-~y-iPGl~VdGmdvlaVr~a~KfA~~~~~~g~GPi  280 (394)
T KOG0225|consen  203 QVFEAFNMAALWKLPVIFVCENNHYGMGTSAERASASTEYYKRG-DY-IPGLKVDGMDVLAVREATKFAKKYALEGKGPI  280 (394)
T ss_pred             hHHHHhhHHHHhCCCEEEEEccCCCccCcchhhhhcChHHHhcc-CC-CCceEECCcchhhHHHHHHHHHHHHhcCCCCE
Confidence            99999999999999999999999999999999999999999999 45 99999999999999999999999999999999


Q ss_pred             EEEEEEecCCCCCCCCC-CCCCCHHHHHHHh-cCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 013928          320 LVECETYRFRGHSLADP-DELRDPAEKARYA-ARDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPP  397 (434)
Q Consensus       320 lIev~t~R~~gHs~~D~-~~yR~~~e~~~~~-~~DPl~~~~~~L~~~G~~te~e~~~i~~e~~~~v~~a~~~A~~~p~p~  397 (434)
                      |+|+.|||++|||++|| ..||+.+|+++.+ ++|||..++++|++.++.|++|+++|+++++++|++++++|+++|.|+
T Consensus       281 lmE~~TYRy~GHSmSDPg~sYRtReEiq~vR~kRDPI~~lk~~li~~~late~ELKai~k~irkeVdeav~~A~~~p~p~  360 (394)
T KOG0225|consen  281 LMEMDTYRYHGHSMSDPGTSYRTREEIQEVRQKRDPIEGLKKRLIELGLATEEELKAIDKEIRKEVDEAVAFATASPEPE  360 (394)
T ss_pred             EEEEeeeeecccccCCCCcccchHHHHHHHHhccChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Confidence            99999999999999999 5799999999887 789999999999999999999999999999999999999999999999


Q ss_pred             cchhhhcccCCCCCCCCCCCCcccccCCCcccccC
Q 013928          398 RSQLLENVFADPKGFGIGPDGRYRCEDPKFTEGTA  432 (434)
Q Consensus       398 ~~~l~~~vya~~~~~~~~~~~~~~~~~~~~~~~~~  432 (434)
                      +++|+.|||..++++.+.+ |+|+|+.+.|..|++
T Consensus       361 ~~eL~~dvy~~~~~~~~~g-~~~~~~~~~~~k~~~  394 (394)
T KOG0225|consen  361 PSELFTDVYVKGTGFEIRG-GRIDEEKWQFFKGVA  394 (394)
T ss_pred             HHHHHHHhhccCCCccccC-cccccccccccccCC
Confidence            9999999999999998888 999999999999875

>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed

Probab=100.00  E-value=9.6e-79  Score=614.39  Aligned_cols=327  Identities=69%  Similarity=1.105  Sum_probs=314.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcCCCCEEEccCcchHHHHHcCCCHHH
Q 013928           82 LLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARA  161 (434)
Q Consensus        82 ~~~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~~~D~v~~~yR~~~~~La~G~~~~~  161 (434)
                      ..+++++++++|+.|+++|.||+++.+++++|++.||+|++.||||+++|++.+|+++||+|++||+|+++|++|+++.+
T Consensus        15 ~~~~~~~ll~~y~~M~~~R~~e~~~~~~~~~g~i~g~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~la~G~~~~~   94 (341)
T CHL00149         15 NNINSMWLLVLYEDMLLGRNFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGVIKLLAETDYVCSTYRDHVHALSKGVPPKN   94 (341)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhCCCCCEEEcccccHHHHHHcCCCHHH
Confidence            45899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCccCCCCCcccccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchH
Q 013928          162 VMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQF  241 (434)
Q Consensus       162 i~~el~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~  241 (434)
                      +|+|++|+.+|+++|++|+||+++++.++.+.+++||+++|+|+|+|+|.|+++...+...++++|||++|||++++|.|
T Consensus        95 ~~ae~~g~~~g~~~Gr~gs~H~~~~~~~~~~~~g~lG~~lp~AvGaa~A~k~~~~~~~~~~~~~vvv~~~GDGa~~~G~~  174 (341)
T CHL00149         95 VMAELFGKETGCSRGRGGSMHIFSAPHNFLGGFAFIGEGIPIALGAAFQSIYRQQVLKEVQPLRVTACFFGDGTTNNGQF  174 (341)
T ss_pred             HHHHHcCCCCCCCCCCCCCccccchhcCccCCChhhhccHHHHHHHHHHHHHhccccccCCCCCEEEEEeCCchhhhcHH
Confidence            99999999999999999999999999999999999999999999999999988543333347899999999999999999


Q ss_pred             HHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEE
Q 013928          242 FECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLV  321 (434)
Q Consensus       242 ~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lI  321 (434)
                      ||+||+|++|+||+||||+||+|+++++...++..+++++++++||+++++|||+|+.+|++++++|++++|.+++|+||
T Consensus       175 ~Ealn~A~~~~LPvifvv~NN~~~i~~~~~~~~~~~d~a~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~ar~~~gP~lI  254 (341)
T CHL00149        175 FECLNMAVLWKLPIIFVVENNQWAIGMAHHRSTSIPEIHKKAEAFGLPGIEVDGMDVLAVREVAKEAVERARQGDGPTLI  254 (341)
T ss_pred             HHHHHHHhhcCCCEEEEEEeCCeeeecchhheeCCccHHHHHHhCCCCEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEE
Confidence            99999999999999999999999999998777778899999999999999999999999999999999999999999999


Q ss_pred             EEEEecCCCCCCCCCCCCCCHHHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcchh
Q 013928          322 ECETYRFRGHSLADPDELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPPRSQL  401 (434)
Q Consensus       322 ev~t~R~~gHs~~D~~~yR~~~e~~~~~~~DPl~~~~~~L~~~G~~te~e~~~i~~e~~~~v~~a~~~A~~~p~p~~~~l  401 (434)
                      |+.|||++||+++|++.||+++|++.|.++|||.+|+++|++.|+++++++++|+++++++|++++++|+++|.|+++++
T Consensus       255 ev~tyR~~gHs~~D~~~YR~~~e~~~~~~~DPi~~~~~~L~~~g~~~~~~~~~i~~e~~~~v~~a~~~a~~~p~p~~~~~  334 (341)
T CHL00149        255 EALTYRFRGHSLADPDELRSKQEKEAWVARDPIKKLKSYIIDNELASQKELNKIQREVKIEIEQAVQFAISSPEPNISDL  334 (341)
T ss_pred             EEEEecCCCcCCCCCccCCCHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccCC
Q 013928          402 LENVFAD  408 (434)
Q Consensus       402 ~~~vya~  408 (434)
                      |++||++
T Consensus       335 ~~~vy~~  341 (341)
T CHL00149        335 KKYLFAD  341 (341)
T ss_pred             HhhcccC
Confidence            9999975

>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit

Probab=100.00  E-value=6.1e-77  Score=596.15  Aligned_cols=315  Identities=57%  Similarity=0.973  Sum_probs=307.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcCCCCEEEccCcchHHHHHcCCCHHHHHHH
Q 013928           86 KQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSE  165 (434)
Q Consensus        86 ~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~~~D~v~~~yR~~~~~La~G~~~~~i~~e  165 (434)
                      +|+++++|++|+++|.||+++.+++++|++.||+|++.||||+++|++.+|+++||+|++||+|+++|++|+++.++|+|
T Consensus         1 ~~~l~~~y~~M~~~R~~d~~~~~l~~~g~~~~~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~la~G~~~~~~~~~   80 (315)
T TIGR03182         1 KEELLELYRDMLLIRRFEEKAGQLYGMGKIGGFCHLYIGQEAVAVGLIAALKPDDYVITSYRDHGHALARGVPPKEVMAE   80 (315)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCCCCChHHHHHHHHHhCCCCCEEEechhhHHHHHHcCCCHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCCCccCCCCCcccccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHH
Q 013928          166 LFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECL  245 (434)
Q Consensus       166 l~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaL  245 (434)
                      ++|+.+|+++|++|++|+.+++.++.+.+++||+++|+|+|+|+|.|++       +++++|||++|||++++|.|+|+|
T Consensus        81 ~~g~~~g~~~Gr~g~~h~~~~~~~~~~~~g~~G~~lp~AiGaa~A~~~~-------~~~~~vv~~~GDGa~~~g~~~eal  153 (315)
T TIGR03182        81 LTGRATGCSKGKGGSMHMFDREKNFYGGHGIVGAQVPLATGLAFANKYR-------GNDNVTACFFGDGAANQGQFYESF  153 (315)
T ss_pred             HcCCCCCCCCCCCCCCCcCchhhCcccCcCcccccccHHHHHHHHHHHh-------CCCCEEEEEeCCCcccccHHHHHH
Confidence            9999999999999999999999999999999999999999999999887       578999999999999999999999


Q ss_pred             HHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEE
Q 013928          246 NMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECET  325 (434)
Q Consensus       246 n~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t  325 (434)
                      |+|++|++|+||||+||+|+++++...+...+++++++++||+++++|||+|+++|++++++|+++++++++|+|||+.|
T Consensus       154 n~A~~~~lPvi~vv~NN~yg~s~~~~~~~~~~~~a~~A~a~G~~~~~Vdg~d~~av~~a~~~A~~~ar~~~gP~lIe~~t  233 (315)
T TIGR03182       154 NMAALWKLPVIFVIENNLYAMGTSVERSSSVTDLYKRGESFGIPGERVDGMDVLAVREAAKEAVERARSGKGPILLEMKT  233 (315)
T ss_pred             HHhhccCcCEEEEEEcCCccccCCHHHHhCCcCHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEeC
Confidence            99999999999999999999999887777788999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCCCCCCCCCCHHHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcchhhhcc
Q 013928          326 YRFRGHSLADPDELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPPRSQLLENV  405 (434)
Q Consensus       326 ~R~~gHs~~D~~~yR~~~e~~~~~~~DPl~~~~~~L~~~G~~te~e~~~i~~e~~~~v~~a~~~A~~~p~p~~~~l~~~v  405 (434)
                      ||.+||+++|++.||+++|++.|.++|||.+|+++|++.|+++++++++++++++++|++++++|++.|.|+++++|+||
T Consensus       234 ~R~~gHs~~D~~~Yr~~~e~~~~~~~dPi~~~~~~L~~~g~~~~~~~~~~~~~~~~~v~~a~~~a~~~p~p~~~~~~~~v  313 (315)
T TIGR03182       234 YRFRGHSMSDPAKYRSKEEVEEWRKRDPIEKLKARLIEQGIASEEELKEIDKEVRAEVEEAVEFAENSPEPPVEELYTDV  313 (315)
T ss_pred             CcCCCCCCCCccccCCHHHHHHHHhcCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cC
Q 013928          406 FA  407 (434)
Q Consensus       406 ya  407 (434)
                      |+
T Consensus       314 y~  315 (315)
T TIGR03182       314 YA  315 (315)
T ss_pred             cC
Confidence            96

Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.

>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit

Probab=100.00  E-value=6.9e-71  Score=557.79  Aligned_cols=314  Identities=37%  Similarity=0.606  Sum_probs=298.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcCCCCEEEccCcchHHHHHcCCCHHH
Q 013928           82 LLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARA  161 (434)
Q Consensus        82 ~~~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~~~D~v~~~yR~~~~~La~G~~~~~  161 (434)
                      +.+++++++++|++|+++|.||+++.+++++|++ ||+|+++||||+++|++.+|+++|+++++||+|+++|++|+++.+
T Consensus        19 ~~~~~~~l~~~y~~m~~~R~~e~~~~~~~~~g~i-~~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~h~~~l~~G~~~~~   97 (341)
T TIGR03181        19 PDLSDEELVELYRDMVLTRRFDTKALALQRQGRL-GTYAPNLGQEAAQVGSALALRKDDWVFPSYRDHAAMLARGVPLVE   97 (341)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCce-ecccCCCChHHHHHHHHHHcCCCCEEEcchhhHHHHHHcCCCHHH
Confidence            4689999999999999999999999999999999 899999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCccCCCCCcccccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchH
Q 013928          162 VMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQF  241 (434)
Q Consensus       162 i~~el~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~  241 (434)
                      +|++++|+.+|.+         ++++.++.+.+++||+++|.|+|+|+|.|+.       +++++|||++|||++++|.|
T Consensus        98 ~~ae~~g~~~g~~---------~~~~~~~~g~~~~vG~~lp~AiGaAla~k~~-------~~~~~vv~~~GDGa~~~g~~  161 (341)
T TIGR03181        98 ILLYWRGDERGSW---------DPEGVNILPPNIPIGTQYLHAAGVAYALKLR-------GEDNVAVTYFGDGGTSEGDF  161 (341)
T ss_pred             HHHHhcCcCcCCC---------CchhcCccCCCchHhcchhHHHhHHHHHHhh-------CCCCEEEEEecCCccccChH
Confidence            9999999876531         2567899999999999999999999999887       67899999999999999999


Q ss_pred             HHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEE
Q 013928          242 FECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLV  321 (434)
Q Consensus       242 ~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lI  321 (434)
                      +|+||+|++|+|||||||+||+|+++++...+...+++++++++||+++++|||+|+.+|++++++|+++++.+++|+||
T Consensus       162 ~EaL~tA~~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~a~~~~gP~lI  241 (341)
T TIGR03181       162 YEALNFAGVFKAPVVFFVQNNQWAISVPRSKQTAAPTLAQKAIAYGIPGVQVDGNDVLAVYAVTKEAVERARSGGGPTLI  241 (341)
T ss_pred             HHHHHHHhccCCCEEEEEECCCCccccchhhhhCCcCHHHHHhhCCCCEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEE
Confidence            99999999999999999999999999887666667899999999999999999999999999999999999999999999


Q ss_pred             EEEEecCCCCCCCCCC-CCCCHHHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcch
Q 013928          322 ECETYRFRGHSLADPD-ELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPPRSQ  400 (434)
Q Consensus       322 ev~t~R~~gHs~~D~~-~yR~~~e~~~~~~~DPl~~~~~~L~~~G~~te~e~~~i~~e~~~~v~~a~~~A~~~p~p~~~~  400 (434)
                      |+.|||..||+++|++ .||+++|++.|.++|||.+|+++|++.|+++++++++|+++++++|++++++|+++|.|++++
T Consensus       242 ev~t~R~~gH~~~D~~~~YR~~~e~~~~~~~Dpi~~~~~~L~~~g~~~~~e~~~i~~~~~~~v~~a~~~a~~~p~P~~~~  321 (341)
T TIGR03181       242 EAVTYRLGPHTTADDPTRYRTKEEEEEWRKKDPILRLRKYLERKGLWDEEQEEALEEEAEAEVAEAVAEALALPPPPVDD  321 (341)
T ss_pred             EEEeecCCCCCCCCCCccCCCHHHHHHHhcCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence            9999999999999865 899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcccCCCCCC
Q 013928          401 LLENVFADPKGF  412 (434)
Q Consensus       401 l~~~vya~~~~~  412 (434)
                      +|+|||++.++.
T Consensus       322 ~~~~vy~~~~~~  333 (341)
T TIGR03181       322 IFDHVYAELPPE  333 (341)
T ss_pred             HHhhcccCCCHH
Confidence            999999976543

Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.

>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC)

Probab=100.00  E-value=1.1e-68  Score=531.61  Aligned_cols=292  Identities=51%  Similarity=0.857  Sum_probs=281.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcCCCCEEEccCcchHHHHHcCCCHHHHHHHHhcCCC
Q 013928           92 LYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKAT  171 (434)
Q Consensus        92 ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~~~D~v~~~yR~~~~~La~G~~~~~i~~el~g~~~  171 (434)
                      +|++|+++|.||+++.+++++|++.||+|++.||||+++|++.+|+++||++++||+|+++|++|+++.++|+|++|+.+
T Consensus         1 ~y~~m~~~R~~e~~~~~~~~~g~~~~~~~~~~GqEa~~vg~~~~l~~~D~~~~~yR~~~~~la~G~~~~~~~~e~~g~~~   80 (293)
T cd02000           1 LYRTMVLIRRFDERLLELYRQGKIGGFYHLSIGQEAVAVGVAAALRPGDWVFPTYRDHGHALARGVDLKEMLAELFGKET   80 (293)
T ss_pred             CHHHHHHHHHHHHHHHHHHHCCccccccCCCCChHHHHHHHHHHCCCCCEEEecchhHHHHHHcCCCHHHHHHHHcCCCC
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccCCCCCcccccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHc
Q 013928          172 GCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALW  251 (434)
Q Consensus       172 g~~~G~ggs~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~  251 (434)
                      ++++|++|++|+++++.++.+.+|+||+++|+|+|+|+|.|+.       +++++|||++|||++++|.|+|+|++|+++
T Consensus        81 g~~~G~~g~~h~~~~~~~~~~~~g~lG~~~p~a~G~a~a~k~~-------~~~~~vv~~~GDGa~~~g~~~E~l~~A~~~  153 (293)
T cd02000          81 GPCKGRGGSMHIGDKEKNFFGGNGIVGGQVPLAAGAALALKYR-------GEDRVAVCFFGDGATNEGDFHEALNFAALW  153 (293)
T ss_pred             CCCCCCCCCCCCCchhcCccccccccccchhHHHHHHHHHHHh-------CCCCEEEEEeCCCccccchHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999887       578999999999999999999999999999


Q ss_pred             CCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCC
Q 013928          252 KLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGH  331 (434)
Q Consensus       252 ~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gH  331 (434)
                      +||+||||+||+|+++++...+.+.+++.+++++||+++++|||+|++++++++++|+++++.+++|+|||+.|||..||
T Consensus       154 ~lPvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~~P~lIev~~~r~~gH  233 (293)
T cd02000         154 KLPVIFVCENNGYAISTPTSRQTAGTSIADRAAAYGIPGIRVDGNDVLAVYEAAKEAVERARAGGGPTLIEAVTYRLGGH  233 (293)
T ss_pred             CCCEEEEEeeCCeeccCCHHHHhCCccHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEeccCCC
Confidence            99999999999999999887777778999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCC-CCCCCCHHHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 013928          332 SLAD-PDELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFA  390 (434)
Q Consensus       332 s~~D-~~~yR~~~e~~~~~~~DPl~~~~~~L~~~G~~te~e~~~i~~e~~~~v~~a~~~A  390 (434)
                      +++| +..||+++|++.|.++||+.+|+++|+++|++|++++++++++++++|++++++|
T Consensus       234 s~~dd~~~Yr~~~e~~~~~~~dpi~~~~~~L~~~g~~~~~~~~~~~~~~~~~v~~a~~~a  293 (293)
T cd02000         234 STSDDPSRYRTKEEVEEWKKRDPILRLRKYLIEAGILTEEELAAIEAEVKAEVEEAVEFA  293 (293)
T ss_pred             CCCCCcccCCCHHHHHHHhcCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence            9665 5689999999999999999999999999999999999999999999999998875

PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).

>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex

Probab=100.00  E-value=5.1e-69  Score=535.44  Aligned_cols=297  Identities=45%  Similarity=0.741  Sum_probs=265.2

Q ss_pred             HHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcCCCCEEEccCcchHHHHHcCCCHHHHHHHHhcCCCCCc
Q 013928           95 DMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCC  174 (434)
Q Consensus        95 ~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~~~D~v~~~yR~~~~~La~G~~~~~i~~el~g~~~g~~  174 (434)
                      +|+++|.||+++..++.++++.||+|++.||||++++++.+|+++||++++||||++.|++|+++.++|+|++|+..+..
T Consensus         2 ~~m~~~r~~d~~~~~~~~~~~~g~~~~~~GqEa~~v~~~~~l~~~D~v~~~yR~~~~~la~g~~~~~~~~e~~g~~~g~~   81 (300)
T PF00676_consen    2 RMMLIRRFEDERARKLQRQGRFGFYHLSAGQEAIQVAAAAALRPGDWVFPYYRDHGHALARGIDLEEIFAELLGKAKGHG   81 (300)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSSSCTT-TTTCHHHHHHHHHHSCTTSEEEECSTTHHHHHHTTT-HHHHHHHHHTBTTSTT
T ss_pred             chHHHHHHHHHHHHHHhhCCCeEEecchHHHHHHHHHHHHhccCCCEEEecccchhhhhhccccccchhHHhcCcccCCC
Confidence            56666777777777777778899999999999999999999999999999999999999999999999999999995554


Q ss_pred             cCCCCCcccccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCC
Q 013928          175 RGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP  254 (434)
Q Consensus       175 ~G~ggs~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP  254 (434)
                      .|+. +.|+.++..++.+.++++|.++|+|+|+|+|.|++       +.+.+++|++|||++++|.|||+||+|+.|+||
T Consensus        82 g~~~-~~~~~~~~~~~~~~~~~vg~~~p~a~G~A~a~k~~-------~~~~v~v~~~GDga~~qG~~~EalN~A~~~~lP  153 (300)
T PF00676_consen   82 GGRH-PLHFSDKGLNILGASSPVGAQVPIAAGVALAIKYR-------GKDGVVVCFFGDGATSQGDFHEALNLAALWKLP  153 (300)
T ss_dssp             TTGC-TTEEEBTTTTBEEEESSTTTHHHHHHHHHHHHHHT-------TSSEEEEEEEETGGGGSHHHHHHHHHHHHTTTS
T ss_pred             CCcc-ccccccccceeeeccccccccCccccchhHhhhhc-------CCceeEEEEecCcccccCccHHHHHHHhhccCC
Confidence            4444 45566777789999999999999999999999977       578999999999999999999999999999999


Q ss_pred             eEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCC
Q 013928          255 IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA  334 (434)
Q Consensus       255 vI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~~  334 (434)
                      |||||+||+|+|+|+...+++..++++++++||+|+++|||+|+++|++++++|++++|+++||+|||++|||++||+++
T Consensus       154 vifvveNN~~aist~~~~~~~~~~~~~~a~~~gip~~~VDG~D~~av~~a~~~A~~~~R~g~gP~lie~~tyR~~gHs~~  233 (300)
T PF00676_consen  154 VIFVVENNQYAISTPTEEQTASPDIADRAKGYGIPGIRVDGNDVEAVYEAAKEAVEYARAGKGPVLIEAVTYRLRGHSES  233 (300)
T ss_dssp             EEEEEEEESEETTEEHHHHCSSSTSGGGGGGTTSEEEEEETTSHHHHHHHHHHHHHHHHTTT--EEEEEEE--SS-SSTT
T ss_pred             eEEEEecCCcccccCccccccccchhhhhhccCCcEEEECCEeHHHHHHHHHHHHHHHhcCCCCEEEEEeeccCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CC-CCCCCHHHHHHHhc-CChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcc
Q 013928          335 DP-DELRDPAEKARYAA-RDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPPRS  399 (434)
Q Consensus       335 D~-~~yR~~~e~~~~~~-~DPl~~~~~~L~~~G~~te~e~~~i~~e~~~~v~~a~~~A~~~p~p~~~  399 (434)
                      |+ ..||+++|++.|++ +|||.+|+++|++.|++|++++++|+++++++|++++++|+++|.|++|
T Consensus       234 Dd~~~yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i~~e~~~~v~~a~~~a~~~p~p~~e  300 (300)
T PF00676_consen  234 DDPTFYRSPEEYEEWWKKRDPIKRFRRYLIEEGVLTEEELDAIEAEIKAEVEEAVEFAEASPEPDPE  300 (300)
T ss_dssp             SCGGGTSHHHHHHHHHHCT-HHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHSHBC-G-
T ss_pred             CCccccCCHHHHHHHHhcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence            95 56998999988765 5999999999999999999999999999999999999999999999975

Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....

>KOG1182 consensus Branched chain alpha-keto acid dehydrogenase complex, alpha subunit [Energy production and conversion]

Probab=100.00  E-value=7.1e-62  Score=468.48  Aligned_cols=328  Identities=28%  Similarity=0.447  Sum_probs=313.4

Q ss_pred             CccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcCCCCEEEccCcchHHHHHcCC
Q 013928           78 SISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGV  157 (434)
Q Consensus        78 ~~~~~~~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~~~D~v~~~yR~~~~~La~G~  157 (434)
                      +...+.++.|..++||++|.+...+|..+-+-++||+| +||.++.|+||+-+|.+++|.++|.|++.||.-|.+|++|.
T Consensus        77 ~sqdp~~~ee~~~kmy~~M~~Ln~MD~IlYesQRQGRi-SFYmT~~GEEa~higSAAAL~p~Dli~gQYREaGVLlwRgf  155 (432)
T KOG1182|consen   77 KSQDPQLSEEVVLKMYKDMTLLNIMDRILYESQRQGRI-SFYMTNFGEEAIHIGSAAALEPQDLIYGQYREAGVLLWRGF  155 (432)
T ss_pred             cccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhcceE-EEEEeccchhhhhhhhhhhCCcccccccccccCceEEEcCc
Confidence            34567899999999999999999999999999999998 69999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhcCCCCCccCCCCCcccccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccc
Q 013928          158 PARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCN  237 (434)
Q Consensus       158 ~~~~i~~el~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~  237 (434)
                      ++++++++++|...+..+|+++++|++++++|+...+++|..++|.|+|+|+|.|+++      +.+..+||++|||+.+
T Consensus       156 tle~f~~qCyGn~~d~gkGrQMPvHyGs~elnf~tissplatqlpqAvGaaYa~k~~~------~nnac~V~yfGdG~aS  229 (432)
T KOG1182|consen  156 TLEEFMNQCYGNKSDLGKGRQMPVHYGSKELNFVTISSPLATQLPQAVGAAYALKMRK------KNNACAVTYFGDGAAS  229 (432)
T ss_pred             cHHHHHHHhcCCccccccccccccccCccccceEEecchhhhccchhhhhhhhhhhcc------cCCeEEEEEecCCccc
Confidence            9999999999999999999999999999999999999999999999999999999874      4568999999999999


Q ss_pred             cchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCC
Q 013928          238 NGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEG  317 (434)
Q Consensus       238 ~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~g  317 (434)
                      +|++|.++|+|+.+..||||+|-||+|+|||++++|.....++-++.+||+..++|||+|+.+||.|+++|.+.+....+
T Consensus       230 EGD~HA~~NfAAtle~Pvif~CRNNG~AISTptseQyr~DGIa~kG~aYGi~sIRVDGnD~lAvYnA~k~ARe~av~e~r  309 (432)
T KOG1182|consen  230 EGDAHAAFNFAATLECPVIFFCRNNGWAISTPTSEQYRGDGIAVKGPAYGIRSIRVDGNDALAVYNAVKEAREMAVTEQR  309 (432)
T ss_pred             ccchhhhhhHHHHhCCCEEEEEcCCCeeeccccHHHhcCCceEEeccccceEEEEecCcchHHHHHHHHHHHHHHHhccC
Confidence            99999999999999999999999999999999999998888999999999999999999999999999999999999999


Q ss_pred             CEEEEEEEecCCCCCCCCC-CCCCCHHHHHHHhc-CChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 013928          318 PTLVECETYRFRGHSLADP-DELRDPAEKARYAA-RDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAP  395 (434)
Q Consensus       318 P~lIev~t~R~~gHs~~D~-~~yR~~~e~~~~~~-~DPl~~~~~~L~~~G~~te~e~~~i~~e~~~~v~~a~~~A~~~p~  395 (434)
                      |+|||+.|||...||++|+ .+||+.+|++.|.. +.||.+|++++..+|+|+|+.-.+++++++++|-++++.|++-++
T Consensus       310 PvliEamtYRvGHHSTSDDSt~YRsadEiq~W~~~~~pisrfr~~i~~~GWw~ee~E~~~rk~~rk~vl~a~~~aEk~~K  389 (432)
T KOG1182|consen  310 PVLIEAMTYRVGHHSTSDDSTAYRSADEIQYWNKSRHPISRFRKYIESNGWWSEEDESELRKNIRKKVLEAIAAAEKKEK  389 (432)
T ss_pred             chhhhhhhhhhccccCCCccccccchhhhhhhhcccCcHHHHHHHHHhcCCcChhhHHHHHHHHHHHHHHHHHHHhcccC
Confidence            9999999999999999976 57999999999964 689999999999999999999999999999999999999999999


Q ss_pred             CCcchhhhcccCCCCCC
Q 013928          396 PPRSQLLENVFADPKGF  412 (434)
Q Consensus       396 p~~~~l~~~vya~~~~~  412 (434)
                      |...++|+|||++++..
T Consensus       390 ~~~~~lF~dVYd~~P~~  406 (432)
T KOG1182|consen  390 PNLTELFEDVYDEMPKN  406 (432)
T ss_pred             CCHHHHHHHHhhhhhHh
Confidence            99999999999987653

>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed

Probab=100.00  E-value=2.5e-59  Score=517.24  Aligned_cols=328  Identities=19%  Similarity=0.248  Sum_probs=290.7

Q ss_pred             hhHHHHHHHhhcCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHH------hcCC
Q 013928           65 VAVSEVVKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIK------LLKK  138 (434)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~------~L~~  138 (434)
                      ...+.||+++||....  .+++++++++|+.|+++|.||+++.++|.++|++|    ++|||++++|+..      .+++
T Consensus       169 ~~er~Wl~~~iE~~~~--~~s~e~~~~il~~m~~~r~fE~fl~~~f~~~Krf~----~eG~Ea~i~gl~~li~~a~~lg~  242 (924)
T PRK09404        169 PEERRWLQQRIESGRP--SFSAEEKKAILERLTAAEGFERFLHTKFVGQKRFS----LEGGESLIPMLDEIIRRAGKLGV  242 (924)
T ss_pred             HHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCccc----ccchhhHHHHHHHHHHHHHhCCC
Confidence            3678999999996544  89999999999999999999999999999999985    5999999999998      4558


Q ss_pred             CCEEEc-cCcchHHHHH--cCCCHHHHHHHHhcCC-------CCCcc----------CCCCCcccccCCCcccCCccccc
Q 013928          139 EDSVVS-TYRDHVHALS--KGVPARAVMSELFGKA-------TGCCR----------GQGGSMHMFSKEHNLLGGFAFIG  198 (434)
Q Consensus       139 ~D~v~~-~yR~~~~~La--~G~~~~~i~~el~g~~-------~g~~~----------G~ggs~h~~~~~~~~~~~~g~lG  198 (434)
                      +|+|++ +||||+++|+  +|+++.++|+|++|+.       +|+++          |++|++|+...     ...+++|
T Consensus       243 ~D~vigmaHRgrlnvLa~v~G~~~~~ifaEf~Gk~~~~~~~~~GdvkyHlG~~~~~~g~gg~mhi~l~-----~npShle  317 (924)
T PRK09404        243 KEIVIGMAHRGRLNVLVNVLGKPPRDLFAEFEGKHGPDEVLGSGDVKYHLGFSSDRETDGGEVHLSLA-----FNPSHLE  317 (924)
T ss_pred             CCEEEecCcCchHHHHHHhcCCCHHHHHHHHcCCCCCCCCCCCCCcccccCccccccCCCCeeEeecc-----CCccccc
Confidence            999999 7999999999  5999999999999997       33333          44555665433     2458999


Q ss_pred             ccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCcccc-ccchHHHHHHHHHHcCCC---eEEEEEcCCccCcccccccc
Q 013928          199 EGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTC-NNGQFFECLNMAALWKLP---IVFVVENNLWAIGMSHLRAT  274 (434)
Q Consensus       199 ~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~-~~G~~~EaLn~A~~~~LP---vI~VV~NN~y~is~~~~~~~  274 (434)
                      .+.|+|+|+|+|.|+++... ......++||++|||++ ++|.|||+||+|+.|+||   +||||+||+|+++|+...++
T Consensus       318 av~Pva~G~A~A~q~~~~~~-~~~~~~v~v~~~GDgA~agqG~v~EalNlA~l~~lp~ggvIfvveNNq~g~tT~~~~~~  396 (924)
T PRK09404        318 IVNPVVEGSVRARQDRRGDG-QDRKKVLPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVINNQIGFTTSPPDDR  396 (924)
T ss_pred             cccCeehhHHHHHHHhcCCc-ccccceEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEeeCHHHhc
Confidence            99999999999999874200 01112689999999998 799999999999999998   99999999999999988888


Q ss_pred             cCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCCCCCCCCCHHHHHHHhc-CCh
Q 013928          275 SDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAA-RDP  353 (434)
Q Consensus       275 ~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~~D~~~yR~~~e~~~~~~-~DP  353 (434)
                      +..+++++|++||+|+++|||+|+++|+++++.|++++|+++||+|||++|||.+||+++|++.||++.|++.|++ +||
T Consensus       397 s~~~~sd~Ak~~giP~~~VDG~D~~AV~~a~~~A~e~~r~g~gPvlIE~~tYR~~GHne~D~p~yr~p~ey~~~~~~~dp  476 (924)
T PRK09404        397 STPYCTDVAKMVQAPIFHVNGDDPEAVVFATRLALEYRQKFKKDVVIDLVCYRRHGHNEGDEPSFTQPLMYKKIKKHPTT  476 (924)
T ss_pred             cchhHHHHHeecCCcEEEEcCCCHHHHHHHHHHHHHHHHhcCcCEEEEEEEecCCCCCCCCCCcCCCHHHHHHHHhcCCH
Confidence            8889999999999999999999999999999999999999999999999999999999999999999999999985 699


Q ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcchhhhcccC
Q 013928          354 ITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPPRSQLLENVFA  407 (434)
Q Consensus       354 l~~~~~~L~~~G~~te~e~~~i~~e~~~~v~~a~~~A~~~p~p~~~~l~~~vya  407 (434)
                      +.+|+++|++.|++|++++++|+++++++|++++++|++.   .+.+.++.+|.
T Consensus       477 i~~~~~~Li~~G~lt~~e~~~i~~~~~~~v~~a~~~A~~~---~~~~~~~~~~~  527 (924)
T PRK09404        477 RELYADKLVAEGVITEEEADEMVNEYRDALDAGFEVVKEW---RPADWLAGDWS  527 (924)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhc---Ccccccccccc
Confidence            9999999999999999999999999999999999999875   24556666664

>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component

Probab=100.00  E-value=1.2e-53  Score=470.40  Aligned_cols=327  Identities=18%  Similarity=0.227  Sum_probs=293.1

Q ss_pred             hhHHHHHHHhhcCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcCC------
Q 013928           65 VAVSEVVKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKK------  138 (434)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~~------  138 (434)
                      ...+.||+++||... ...+++++.+++++.|+.+..||+++.+.|...|+||.    .|.|++.+++..+++.      
T Consensus       168 ~~~r~Wl~~~iE~~~-~~~~~~~~k~~il~~L~~ae~fE~fl~~kf~g~KRFsl----EG~eslip~l~~~i~~~~~~gv  242 (929)
T TIGR00239       168 TEEKRWLQQRIESGE-RAQFNSEEKKRFLSRLTAAEGFERFLGAKFPGAKRFSL----EGLDALVPMLKEIIRHSVNSGT  242 (929)
T ss_pred             HHHHHHHHHHHhCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCceeec----ccHHHHHHHHHHHHHHHHHcCC
Confidence            457899999999766 77899999999999999999999999999999999986    9999999988888763      


Q ss_pred             CCEEEcc-CcchHHHHH--cCCCHHHHHHHHhcCCCCC-ccCCCCC-ccccc-----------CCCcccCCcccccccch
Q 013928          139 EDSVVST-YRDHVHALS--KGVPARAVMSELFGKATGC-CRGQGGS-MHMFS-----------KEHNLLGGFAFIGEGIP  202 (434)
Q Consensus       139 ~D~v~~~-yR~~~~~La--~G~~~~~i~~el~g~~~g~-~~G~ggs-~h~~~-----------~~~~~~~~~g~lG~glp  202 (434)
                      +|+|++. ||||++.|+  +|++++++|+|+.|+..+. +.|+|+. +|++.           ....+.++.++|+.+.|
T Consensus       243 ~d~v~gmaHRGRlnvL~nv~gkp~~~if~ef~g~~~~~~~~g~gdvKyHlg~~~~~~~~~~~~~~~~l~~npSHLeav~P  322 (929)
T TIGR00239       243 RDVVLGMAHRGRLNVLVNVLGKPPEDIFSEFAGKHKSHLPDGTGDVKYHMGRFSSDFTTDGKLVHLALAFNPSHLEIVSP  322 (929)
T ss_pred             CeEEeccccCCcHHHHHHHhCCCHHHHHHHHcCCCCCcccCCCCCcCccCCCcccccccCCCcceeeecCCCcccccccc
Confidence            8999996 999999999  9999999999999987653 3466766 89884           34566788999999999


Q ss_pred             hhHHHHHHHHHHHhhhhhcCCCceEEEEeCcccc-ccchHHHHHHHHHHcCCCe---EEEEEcCCccCcccccccccCch
Q 013928          203 VATGAAFTSKYRREVLKEADCDHVTLAFFGDGTC-NNGQFFECLNMAALWKLPI---VFVVENNLWAIGMSHLRATSDPQ  278 (434)
Q Consensus       203 ~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~-~~G~~~EaLn~A~~~~LPv---I~VV~NN~y~is~~~~~~~~~~d  278 (434)
                      +|+|.|+|.|+++... ..+.+.++||++|||++ ++|.|||+||+|..|++|+   ||||+||+|+++|+...+++..+
T Consensus       323 va~G~ArA~q~~~~~~-~~~~~~v~v~~~GDgA~agQG~v~EaLNlA~l~~lPvGGtIfvveNNqyg~tT~~~~~~s~~~  401 (929)
T TIGR00239       323 VVIGSTRARLDRLNDS-PESTKVLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQIGFTTNPLDARSTPY  401 (929)
T ss_pred             hhhhHHHHHHHhcCCc-ccccceEEEEEeccccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEEEcHHHhcCccC
Confidence            9999999999874200 11236789999999997 7999999999999999996   99999999999998878877888


Q ss_pred             hhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCCCCCC-CCCHHHHHHHhc-CChHHH
Q 013928          279 IYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDE-LRDPAEKARYAA-RDPITA  356 (434)
Q Consensus       279 ~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~~D~~~-yR~~~e~~~~~~-~DPl~~  356 (434)
                      ++++|++||+|+++|||+|+++|+.+++.|++++|+++||+|||++|||.+||+++|++. ||+ .|++.|++ +||+.+
T Consensus       402 ~sd~Ak~ygiP~~~VDG~D~~AV~~a~~~Ave~~r~g~gPvlIE~~tYR~~GHne~D~p~~yrp-~~~~~i~~~~dPi~~  480 (929)
T TIGR00239       402 CSDLAKMIQAPIFHVNADDPEAVAFATRLAVEYRNTFKRDVFIDLVGYRRHGHNEADEPSATQP-LMYQKIKKHPTPRKV  480 (929)
T ss_pred             HHHHheecCCCEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeccCCCCCCCCCCccCCH-HHHHHHHhCCCHHHH
Confidence            999999999999999999999999999999999999999999999999999999999987 665 88888874 699999


Q ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhCCCCCc
Q 013928          357 LKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPPR  398 (434)
Q Consensus       357 ~~~~L~~~G~~te~e~~~i~~e~~~~v~~a~~~A~~~p~p~~  398 (434)
                      |+++|++.|++|++++++|+++++++|+++++.+...+.|..
T Consensus       481 ~~~~Li~~Gv~te~e~~~i~~~~~~~v~~a~~~~~~~~~~~~  522 (929)
T TIGR00239       481 YADKLVSEGVATEEDVTEMVNLYRDALEAADCVVPSWREMNT  522 (929)
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhccCCccc
Confidence            999999999999999999999999999999999887655443

The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.

>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC)

Probab=100.00  E-value=5.7e-49  Score=382.09  Aligned_cols=237  Identities=22%  Similarity=0.313  Sum_probs=215.8

Q ss_pred             HHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcCC------CCEEEcc-CcchHHHHH--cCCCHHHHHHHHhcCCC-
Q 013928          102 FEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKK------EDSVVST-YRDHVHALS--KGVPARAVMSELFGKAT-  171 (434)
Q Consensus       102 fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~~------~D~v~~~-yR~~~~~La--~G~~~~~i~~el~g~~~-  171 (434)
                      ||+++.+.|...|++|    .+|+|++++++..+|++      +|+++++ ||||++.|+  +|++++++|+|++|+.+ 
T Consensus         1 ~e~f~~~~f~~~krfs----~eG~Es~~~~l~~~~~~~~~~~~~d~v~gm~HRgrln~L~~~lg~~~~~if~ef~g~~~~   76 (265)
T cd02016           1 FEQFLATKFPGQKRFG----LEGAESLIPALDELIDRAAELGVEEVVIGMAHRGRLNVLANVLGKPLEQIFSEFEGKSEF   76 (265)
T ss_pred             ChhhHHHhcCCCeEEE----ecCHHHHHHHHHHHHHHHHhcCCCeEEeccCcCCcHHHHHHHhCCCHHHHHHHhhCCCCC
Confidence            6899999999999876    59999999999999998      7999997 999999999  99999999999999877 


Q ss_pred             --CCccCCCCCcccccCC-----------CcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCcccc-c
Q 013928          172 --GCCRGQGGSMHMFSKE-----------HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTC-N  237 (434)
Q Consensus       172 --g~~~G~ggs~h~~~~~-----------~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~-~  237 (434)
                        +.+.+++.++|++...           ..+.++.++||.++|+|+|+|+|.|+++.  +....+.++||++|||++ +
T Consensus        77 ~~~~~~~gdv~yHlg~~~~~~~~~~~~~~~~l~~npS~l~~~~pva~G~A~A~k~~~~--~~~~~~~v~v~~~GDgA~~~  154 (265)
T cd02016          77 PEDDEGSGDVKYHLGYSSDRKTPSGKKVHLSLAPNPSHLEAVNPVVMGKTRAKQDYRG--DGERDKVLPILIHGDAAFAG  154 (265)
T ss_pred             CCCCCCCCCcCcCCccCcccccCCCCeeEEEecCCCcccccccCeehhHHHHHHHhcC--CccCCCeEEEEEecCccccC
Confidence              4445667789997654           45678899999999999999999998841  011246799999999996 6


Q ss_pred             cchHHHHHHHHHHcCCC---eEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHc
Q 013928          238 NGQFFECLNMAALWKLP---IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARR  314 (434)
Q Consensus       238 ~G~~~EaLn~A~~~~LP---vI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~  314 (434)
                      +|.|+|+||+|.+|++|   +||||+||+|+++|+...+++..++++++++||+|+++|||+|+++|++++++|++++|+
T Consensus       155 qG~~~EalNlA~l~~lp~gg~ifvveNNq~g~sT~~~~~~~~~~~~~~a~~~gip~~~VdG~D~~aV~~a~~~A~~~~r~  234 (265)
T cd02016         155 QGVVYETLNLSNLPGYTTGGTIHIVVNNQIGFTTDPRDSRSSPYCTDVAKMIGAPIFHVNGDDPEAVVRATRLALEYRQK  234 (265)
T ss_pred             CChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEEecHHHhcccccHHHHHeecCCCEEEEcCCCHHHHHHHHHHHHHHHHh
Confidence            99999999999999999   999999999999999998888889999999999999999999999999999999999999


Q ss_pred             cCCCEEEEEEEecCCCCCCCCCCCCCCHHH
Q 013928          315 GEGPTLVECETYRFRGHSLADPDELRDPAE  344 (434)
Q Consensus       315 ~~gP~lIev~t~R~~gHs~~D~~~yR~~~e  344 (434)
                      +++|+|||++|||++||+++|++.|++|.+
T Consensus       235 g~gp~lIe~~tYR~~GHse~D~p~~t~p~m  264 (265)
T cd02016         235 FKKDVVIDLVCYRRHGHNELDEPSFTQPLM  264 (265)
T ss_pred             cCCCEEEEEEEecCCCCCCcCCccccCCCc
Confidence            999999999999999999999999998864

OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.

>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed

Probab=100.00  E-value=2.6e-38  Score=341.42  Aligned_cols=322  Identities=20%  Similarity=0.248  Sum_probs=280.7

Q ss_pred             hhHHHHHHHhhcCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcCC------
Q 013928           65 VAVSEVVKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKK------  138 (434)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~~------  138 (434)
                      --++.|||++||.+  ..++++++-+.+++++--...||.++...|..+|+|+.    +|-|.+.+.+..+|..      
T Consensus       473 peqr~W~Q~rvE~~--~~kp~~~eq~~iL~~LnaaEaFEtFLqtkyvGqkRFsl----EG~Es~iplld~~~~~aa~~~l  546 (1228)
T PRK12270        473 PEQRRWLQERVERP--HEKPTREEQKRILSKLNAAEAFETFLQTKYVGQKRFSL----EGGESLIPLLDAVLDQAAEHGL  546 (1228)
T ss_pred             HHHHHHHHHHhhCC--CCCCCHHHHHHHHHHhhhHHHHHHHHhhhcccceeeee----cchhhHHHHHHHHHHHHHhcCC
Confidence            35789999999954  68889999999999999999999999999999999876    9999999988888864      


Q ss_pred             CCEEEc-cCcchHHHHH--cCCCHHHHHHHHhcCCCCC-ccCCCC-CcccccCC-----------CcccCCcccccccch
Q 013928          139 EDSVVS-TYRDHVHALS--KGVPARAVMSELFGKATGC-CRGQGG-SMHMFSKE-----------HNLLGGFAFIGEGIP  202 (434)
Q Consensus       139 ~D~v~~-~yR~~~~~La--~G~~~~~i~~el~g~~~g~-~~G~gg-s~h~~~~~-----------~~~~~~~g~lG~glp  202 (434)
                      +.++++ .|||+.+.|+  .|.+..+||+||-|..+.. ..|.|. .+|++...           ..+..+.++|...-|
T Consensus       547 ~evvigm~HRGRLNVLani~gK~y~qiF~EFegn~dp~~~~GsGDVKYHlG~eG~~~~~~g~~~~v~laaNPSHLEavdp  626 (1228)
T PRK12270        547 DEVVIGMAHRGRLNVLANIVGKPYSQIFREFEGNLDPRSAQGSGDVKYHLGAEGTFTQMFGDEIKVSLAANPSHLEAVDP  626 (1228)
T ss_pred             ceEEecccccchHHHHHHHhcCCHHHHHHHhcCCCCccccCcCcceeeeccCceeeeccCCCeeEEEEecCchhhhhcch
Confidence            456777 8999999999  7999999999999986533 333332 47776431           223577899999999


Q ss_pred             hhHHHHHHHHHHHhhhhhcCCCceEEEEeCcccc-ccchHHHHHHHHHHcCCC---eEEEEEcCCccCcccccccccCch
Q 013928          203 VATGAAFTSKYRREVLKEADCDHVTLAFFGDGTC-NNGQFFECLNMAALWKLP---IVFVVENNLWAIGMSHLRATSDPQ  278 (434)
Q Consensus       203 ~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~-~~G~~~EaLn~A~~~~LP---vI~VV~NN~y~is~~~~~~~~~~d  278 (434)
                      +.-|...|.+..-.. ...+-....|+++||++| ++|+++|.||++..|++|   +||||.||+|+++|.....+++.+
T Consensus       627 VleGivRakQd~l~~-g~~~~~vlpi~~hGdaafagQGvV~Etlnla~l~~y~tGGtIhvivNNqiGftT~p~~~Rss~y  705 (1228)
T PRK12270        627 VLEGIVRAKQDRLDK-GEEGFTVLPILLHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVVNNQVGFTTAPESSRSSEY  705 (1228)
T ss_pred             Hhhhhhhhhhhhhcc-cccCCceeEEEEeccccccCCchHHHHHHHHhccCCCCCCeEEEEEecCcccccCccccccchh
Confidence            999999997765321 111234568999999997 599999999999999999   999999999999999988888889


Q ss_pred             hhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCCCCCCCCCHHHHHHHhcCCh-HHHH
Q 013928          279 IYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAARDP-ITAL  357 (434)
Q Consensus       279 ~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~~D~~~yR~~~e~~~~~~~DP-l~~~  357 (434)
                      ..++++++++|+++|||+|+++|.++++.|+++++++++|++||+.|||.+||++.|++.+++|.++..+.++.. -+.|
T Consensus       706 ~td~ak~~~~PifhVNGdDpeAv~~va~lA~~yr~~f~~dVvIdlvcYRrrGHNEgDdPSmtqP~mY~~i~~~~svrk~y  785 (1228)
T PRK12270        706 ATDVAKMIQAPIFHVNGDDPEAVVRVARLAFEYRQRFHKDVVIDLVCYRRRGHNEGDDPSMTQPLMYDLIDAKRSVRKLY  785 (1228)
T ss_pred             hHHHHhhcCCCEEeECCCCHHHHHHHHHHHHHHHHHcCCCeEEEEEEEeecCCCCCCCcccCCchhhhhhhhcchHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999998877654 6789


Q ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhC
Q 013928          358 KKYLIESSLASEAELKAIEKKIDEVVEDAVEFADES  393 (434)
Q Consensus       358 ~~~L~~~G~~te~e~~~i~~e~~~~v~~a~~~A~~~  393 (434)
                      .+.|+.+|.+|++|.+++.++++++++.+++..++.
T Consensus       786 te~Ligrgdit~ee~e~~l~dy~~~Le~~f~e~re~  821 (1228)
T PRK12270        786 TEALIGRGDITVEEAEQALRDYQGQLERVFNEVREA  821 (1228)
T ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999998877753

>KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.5e-33  Score=293.68  Aligned_cols=334  Identities=20%  Similarity=0.275  Sum_probs=285.6

Q ss_pred             hhHHHHHHHhhcCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcCC------
Q 013928           65 VAVSEVVKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKK------  138 (434)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~~------  138 (434)
                      .-+..||.++|+.+ ....++.|+.+-||.++.++-.||+++...|...|+||.    +|.|.+.+|+..+++.      
T Consensus       228 ~eqcnWir~k~EtP-~~~q~s~e~k~~il~RL~~st~FE~FLa~Kw~seKRFGL----EGcE~lIP~mK~iiDrS~elGV  302 (1017)
T KOG0450|consen  228 LEQCNWIRQKFETP-GPMQYSHEQKRVILDRLTRSTRFEEFLATKWPSEKRFGL----EGCEVLIPAMKTIIDRSSELGV  302 (1017)
T ss_pred             HHHhHHHHHhccCC-CccccCHHHHHHHHHHHHHhhHHHHHHhhhCCccccccc----cchhhhhhHHHHHhhhhhhcCc
Confidence            44678999999986 356789999999999999999999999999999999997    9999999999988875      


Q ss_pred             CCEEEc-cCcchHHHHHc--CCCHHHHHHHHhcCCCCCccCCCC-Cccccc---CC---------CcccCCcccccccch
Q 013928          139 EDSVVS-TYRDHVHALSK--GVPARAVMSELFGKATGCCRGQGG-SMHMFS---KE---------HNLLGGFAFIGEGIP  202 (434)
Q Consensus       139 ~D~v~~-~yR~~~~~La~--G~~~~~i~~el~g~~~g~~~G~gg-s~h~~~---~~---------~~~~~~~g~lG~glp  202 (434)
                      ++.|++ .|||+.+.|+.  -.++++||.|+.|..+.+. |.|. .+|++-   +.         +.+..+.++|...-|
T Consensus       303 e~iviGMpHRGRLNvL~NVvRKpl~qIfseF~g~~~~De-GSGDVKYHLG~~~~R~~r~s~k~i~LslVANPSHLEA~DP  381 (1017)
T KOG0450|consen  303 ESIVIGMPHRGRLNVLANVVRKPLEQIFSEFSGLEAADE-GSGDVKYHLGMYYERPNRVSGKNITLSLVANPSHLEAVDP  381 (1017)
T ss_pred             hheEecCCccchhHHHHHHHhhHHHHHHHhccCCCCCcC-CCCceeeeeccccccccccCCceeEEEEecCchhhcccCc
Confidence            688888 89999999984  4699999999999654332 3222 466541   11         123577899999999


Q ss_pred             hhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccc-cchHHHHHHHHHHcCCC---eEEEEEcCCccCcccccccccCch
Q 013928          203 VATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCN-NGQFFECLNMAALWKLP---IVFVVENNLWAIGMSHLRATSDPQ  278 (434)
Q Consensus       203 ~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~-~G~~~EaLn~A~~~~LP---vI~VV~NN~y~is~~~~~~~~~~d  278 (434)
                      +.+|...|.++....  ..+.....|.++||++|. +|.++|.+.+..+.++-   .|+||.|||++++|.....+++|+
T Consensus       382 VV~GKtrA~q~y~~D--~~~~k~m~ILiHGDaaFAgQGVVyET~hls~LP~YtT~GTvHvVvNNQIgFTTDPR~aRSspY  459 (1017)
T KOG0450|consen  382 VVMGKTRAEQFYTGD--EEGKKVMGILIHGDAAFAGQGVVYETFHLSDLPSYTTGGTVHVVVNNQIGFTTDPRFARSSPY  459 (1017)
T ss_pred             eeechHHHHHHhccc--cccceeEEEEEecchhhccCceEEEeeccccCCCcccCCeEEEEEccccccccCcccccCCCC
Confidence            999999999887531  124456789999999985 99999999987776665   899999999999999998999999


Q ss_pred             hhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCCCCCCCCCHHHHHHHhcC-ChHHHH
Q 013928          279 IYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAAR-DPITAL  357 (434)
Q Consensus       279 ~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~~D~~~yR~~~e~~~~~~~-DPl~~~  357 (434)
                      +.++|++.++|.++|+++|+++|.-+++-|.++...+++.++|+++|||.+||++.|.+.|+.|.+++.++++ ..+..|
T Consensus       460 cTDvar~v~aPIFHVNaDD~EAV~~vc~vAAeWR~tFh~DvVVDlVcyRR~GHNE~DeP~FTQPlMYk~I~k~~~~l~~Y  539 (1017)
T KOG0450|consen  460 CTDVARVVNAPIFHVNADDPEAVMHVCKVAAEWRKTFHKDVVVDLVCYRRHGHNEIDEPMFTQPLMYKQIRKHKPVLQKY  539 (1017)
T ss_pred             chhHHHHhCCCeEeecCCChHHHHHHHHHHHHHHHHhccCeEEEEEEEeecCCCcccCccccchHHHHHHHcCCcHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999876 568899


Q ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcchhhhccc
Q 013928          358 KKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPPRSQLLENVF  406 (434)
Q Consensus       358 ~~~L~~~G~~te~e~~~i~~e~~~~v~~a~~~A~~~p~p~~~~l~~~vy  406 (434)
                      .+.|+.+|.+++++++++.+++....+++++.++..-.-...+.++.-|
T Consensus       540 ~ekLl~egtvs~~evd~~~~k~~~I~eeafe~sKd~~~~~~rdWL~spW  588 (1017)
T KOG0450|consen  540 AEKLLSEGTVSQQEVDEEIKKYDNILEEAFERSKDYKPLHIRDWLDSPW  588 (1017)
T ss_pred             HHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhcCCC
Confidence            9999999999999999999999999999999988743222244444433

>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional

Probab=100.00  E-value=1.4e-33  Score=303.71  Aligned_cols=234  Identities=22%  Similarity=0.191  Sum_probs=194.0

Q ss_pred             HHHhhcCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcC---CCCEEE--cc
Q 013928           71 VKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLK---KEDSVV--ST  145 (434)
Q Consensus        71 ~~~~~~~~~~~~~~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~---~~D~v~--~~  145 (434)
                      ++++|+.+..-..++.++|.++-..   +|.+     -++..++..|++|++.|+  +.++++.++.   |.|+++  +.
T Consensus         2 ~l~~~~~p~d~~~l~~~~l~~l~~~---ir~~-----~~~~~~~~~Gh~~~~lg~--vel~~al~~~f~~~~D~ii~d~g   71 (581)
T PRK12315          2 YLEKINSPADLKKLSLDELEQLASE---IRTA-----LLEKDSAHGGHVGPNLGV--VELTIALHYVFNSPKDKIVWDVS   71 (581)
T ss_pred             chhhcCCHHHHhhCCHHHHHHHHHH---HHHH-----HHHHHHhcCCCcCcchhH--HHHHHHHHhhcCCCCCcEEEecC
Confidence            4678888777788888888776643   5544     233456778999999999  4444555555   899999  89


Q ss_pred             CcchHHHHHcCCCHHHHHHHHhcCCCCCccCCCCCcccccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCc
Q 013928          146 YRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH  225 (434)
Q Consensus       146 yR~~~~~La~G~~~~~i~~el~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~  225 (434)
                      ||+|++.|++|.++..++.+++|+.+|++++.+ +.|.+       ...|+.|.++++|+|+|+|.|++       +.+.
T Consensus        72 hr~~~~~l~~G~~~~~~~~~~~g~~~G~~~~~~-s~~~~-------~~~g~~~~~ls~A~G~A~A~k~~-------~~~~  136 (581)
T PRK12315         72 HQSYPHKMLTGRKEAFLDPDHYDDVTGYTNPEE-SEHDF-------FTVGHTSTSIALATGLAKARDLK-------GEKG  136 (581)
T ss_pred             CchHHHHHHcCCccchhhHHHcCCCCCCCCCCC-CCCCC-------cCCCcHHHHHHHHHHHHHHHHhc-------CCCC
Confidence            999999999999999999999999999988766 44432       24578899999999999999887       4578


Q ss_pred             eEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccc---------cccCchhhhccccCCCcEEEE-eC
Q 013928          226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLR---------ATSDPQIYKKGPAFGMPGFHV-DG  295 (434)
Q Consensus       226 ~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~---------~~~~~d~~~~a~a~Gi~~~~V-dG  295 (434)
                      +|||++|||++++|.+||+||+|+.|++|+||||+||+|+++++...         +....++..++++|||+++.| ||
T Consensus       137 ~vv~~iGDG~~~eG~~~EAln~A~~~k~~li~Ii~dN~~si~~~~~~~~~~l~~~~~~~~~~~~~~~~a~G~~~~~v~DG  216 (581)
T PRK12315        137 NIIAVIGDGSLSGGLALEGLNNAAELKSNLIIIVNDNQMSIAENHGGLYKNLKELRDTNGQSENNLFKAMGLDYRYVEDG  216 (581)
T ss_pred             eEEEEECchhhhcchHHHHHHHHHhhCCCEEEEEECCCCcCCCCCchhhhhhhhhhhcccccHHHHHHhcCCeEEEeeCC
Confidence            99999999999999999999999999999999999999999977632         223345677899999999998 99


Q ss_pred             CCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCC
Q 013928          296 MDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSL  333 (434)
Q Consensus       296 ~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~  333 (434)
                      +|+.++++++++|    +..++|++|+++|+|++|...
T Consensus       217 ~D~~~l~~a~~~a----~~~~gP~~i~~~T~kG~G~~~  250 (581)
T PRK12315        217 NDIESLIEAFKEV----KDIDHPIVLHIHTLKGKGYQP  250 (581)
T ss_pred             CCHHHHHHHHHHH----HhCCCCEEEEEEeecCCCCCh
Confidence            9999999977764    457899999999999999753

>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]

Probab=100.00  E-value=1.1e-31  Score=290.74  Aligned_cols=320  Identities=19%  Similarity=0.219  Sum_probs=279.1

Q ss_pred             hhHHHHHHHhhcCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcCC------
Q 013928           65 VAVSEVVKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKK------  138 (434)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~~------  138 (434)
                      ...++||+++||.  ..+.++.|+.+.+|+.+..+..||.++...|...|+||.    +|.|++.+++..+++.      
T Consensus       155 ~~~~~Wl~~riE~--~~~~~~~e~k~~~l~~L~~ae~fE~fl~~kf~g~KRFsl----EG~eslip~l~~~i~~~~~~G~  228 (906)
T COG0567         155 PEEKRWLQERIES--GKPTFTAEEKKAILKRLTAAEGFERFLHTKFPGAKRFSL----EGGESLIPMLDELIDRAGKQGV  228 (906)
T ss_pred             HHHHHHHHHHHhc--CCCCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCccccc----cchhhHHHHHHHHHHHHHhcCc
Confidence            3578999999998  678899999999999999999999999999999999986    9999999999888863      


Q ss_pred             CCEEEc-cCcchHHHHH--cCCCHHHHHHHHhcCCCCC-ccCCCCCcccccC----------CCcccCCcccccccchhh
Q 013928          139 EDSVVS-TYRDHVHALS--KGVPARAVMSELFGKATGC-CRGQGGSMHMFSK----------EHNLLGGFAFIGEGIPVA  204 (434)
Q Consensus       139 ~D~v~~-~yR~~~~~La--~G~~~~~i~~el~g~~~g~-~~G~ggs~h~~~~----------~~~~~~~~g~lG~glp~A  204 (434)
                      .++|++ .|||+.+.|+  .|.+++.+|.||.|+.... ..|+. .+|++..          .+.+..+.++|....|+.
T Consensus       229 ~~vviGMaHRGRLNvL~nvlgKp~~~if~eF~g~~~~~~~sGDV-KYH~G~~~~~~~~~~~v~l~La~NPSHLE~v~PVV  307 (906)
T COG0567         229 KEVVIGMAHRGRLNVLVNVLGKPYRDIFDEFEGKSAEPDLSGDV-KYHLGFSSDRQTDGGKVHLSLAFNPSHLEIVNPVV  307 (906)
T ss_pred             ceEEecccccchHHHHHHHhCCCHHHHHHHhCCCCCCCCccccc-ccccccccccccCCCeeEEEecCCcchhhhhchhh
Confidence            788888 8999999998  7999999999999975322 12221 4666421          122356789999999999


Q ss_pred             HHHHHHHHHHHhhhhhcCCCceEEEEeCccccc-cchHHHHHHHHHHcCCC---eEEEEEcCCccCcccccccccCchhh
Q 013928          205 TGAAFTSKYRREVLKEADCDHVTLAFFGDGTCN-NGQFFECLNMAALWKLP---IVFVVENNLWAIGMSHLRATSDPQIY  280 (434)
Q Consensus       205 vGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~-~G~~~EaLn~A~~~~LP---vI~VV~NN~y~is~~~~~~~~~~d~~  280 (434)
                      .|.+.|.+.....  ........+.++||.++. +|.+.|.||+....+..   .|+||.||+.+++|.....+++++..
T Consensus       308 ~G~vRa~Qd~~~d--~~~~k~lpiliHGDAAfaGQGVV~Etlnls~~~gysvgGtiHiviNNQiGFTTsp~~sRSt~Y~T  385 (906)
T COG0567         308 EGSVRAKQDRLGD--TERDKVLPILIHGDAAFAGQGVVAETLNLSRLDGYSVGGTWHIVINNQIGFTTSPADARSTPYCT  385 (906)
T ss_pred             hcchHhhhhhhcc--CccceeEEEEEecChhcCCccHHHHHHHhhCCCCcccCCeEEEEEecCCCCCCCcccccCCCCCC
Confidence            9999998766321  112234567999999985 99999999999988876   89999999999999988888899999


Q ss_pred             hccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCCCCCCCCCHHHHHHHhcC-ChHHHHHH
Q 013928          281 KKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAAR-DPITALKK  359 (434)
Q Consensus       281 ~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~~D~~~yR~~~e~~~~~~~-DPl~~~~~  359 (434)
                      ++++.+++|+++|+|.||+++..+.+.|++++..++++++|++.|||.+||+++|.+.++.|.+++.++++ .+...|.+
T Consensus       386 DvAKm~~aPifHVN~DDPEAv~~a~~~A~e~R~~F~kDvvIDlvcYRr~GHNE~DePs~TqP~mY~~I~~h~t~r~~ya~  465 (906)
T COG0567         386 DVAKMIEAPIFHVNADDPEAVLFAPALALEYRNGFKKDVVIDLVCYRRHGHNEGDEPSVTQPLMYQKIKKHPTVRKLYAD  465 (906)
T ss_pred             ChhhccCCceeecccCCchhhhhhHHHHHHHHhhcCCCeeeecccCCCCCCCccccccccCHHHHHHHhcCCChhhhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999876 68889999


Q ss_pred             HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhC
Q 013928          360 YLIESSLASEAELKAIEKKIDEVVEDAVEFADES  393 (434)
Q Consensus       360 ~L~~~G~~te~e~~~i~~e~~~~v~~a~~~A~~~  393 (434)
                      .|+++|++++++.+++.++++..++.........
T Consensus       466 ~Lv~~gvis~~~~~~~~~~~r~~L~~~~~~~~~~  499 (906)
T COG0567         466 KLIAEGVISEEEADELVNDYRDALDQGFEVVKEY  499 (906)
T ss_pred             HHHhhccccHHHHHHHHHHHHHHhhhhhhHHhHH
Confidence            9999999999999999999999999887766553

>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]

Probab=100.00  E-value=8.9e-32  Score=275.26  Aligned_cols=324  Identities=20%  Similarity=0.271  Sum_probs=270.6

Q ss_pred             HHHHHHhhcCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcCC------CCE
Q 013928           68 SEVVKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKK------EDS  141 (434)
Q Consensus        68 ~~~~~~~~~~~~~~~~~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~~------~D~  141 (434)
                      ++|+..+++.- ....+.+|++.++-+.|+++..||.++...|.+-|+.|    +.|-|.+.+-+..+|+.      .|.
T Consensus       139 r~W~a~nFE~l-~~e~l~keEr~~i~~Lmlksq~fD~FlatKFpTvKRYG----gEGAESM~aFF~eLl~~sa~~~ie~v  213 (913)
T KOG0451|consen  139 REWLARNFETL-DQEQLGKEERCEIAELMLKSQAFDNFLATKFPTVKRYG----GEGAESMLAFFWELLRDSAQANIEHV  213 (913)
T ss_pred             HHHHHHHHHHH-HHHHhhHHHHHHHHHHHHhhhhHHHHHHhccchhhhhc----cccHHHHHHHHHHHHHHHHhcCcceE
Confidence            46676666653 24568899999999999999999999999999999987    59999998777777763      788


Q ss_pred             EEc-cCcchHHHHH--cCCCHHHHHHHHhcCCCCCc----cCCCCCccccc--------CC--CcccCCcccccccchhh
Q 013928          142 VVS-TYRDHVHALS--KGVPARAVMSELFGKATGCC----RGQGGSMHMFS--------KE--HNLLGGFAFIGEGIPVA  204 (434)
Q Consensus       142 v~~-~yR~~~~~La--~G~~~~~i~~el~g~~~g~~----~G~ggs~h~~~--------~~--~~~~~~~g~lG~glp~A  204 (434)
                      |++ .|||+...|.  ..++|..+|+.+.|...-+.    .|+.- .|+.+        .+  ..+.++.+++....|+|
T Consensus       214 iigmpHRGRlnLlt~Ll~fpP~~mFRK~~G~sEFpE~~~A~gDVl-SHl~sS~dykg~~~~lhvtMlpNPSHLEAvNPVA  292 (913)
T KOG0451|consen  214 IIGMPHRGRLNLLTALLNFPPAKMFRKLSGASEFPEDIEAMGDVL-SHLHSSEDYKGLGKKLHVTMLPNPSHLEAVNPVA  292 (913)
T ss_pred             EEeccccCcchHHHHHhcCCHHHHHHHhcCcccCchhhhHHHHHH-HHhhhhhhhcccCCceEEEecCChhhhhccCchh
Confidence            888 8999999886  78999999999999865331    22221 22211        11  13467889999999999


Q ss_pred             HHHHHHHHHHHhhhh--h-----cCCCceEEEEeCccccc-cchHHHHHHHHHHcCCC---eEEEEEcCCccCccccccc
Q 013928          205 TGAAFTSKYRREVLK--E-----ADCDHVTLAFFGDGTCN-NGQFFECLNMAALWKLP---IVFVVENNLWAIGMSHLRA  273 (434)
Q Consensus       205 vGaA~A~k~~~~~~~--~-----~~~d~~vv~~~GDGa~~-~G~~~EaLn~A~~~~LP---vI~VV~NN~y~is~~~~~~  273 (434)
                      +|.+.+.+.......  .     .+.....+.++|||+|. +|+++|+++++-.....   .|++|.||+.+++++....
T Consensus       293 mGKtR~rqqsr~~Gdyspd~sa~~Gd~Vlnv~vHGDaaF~GQGiv~E~~~ls~~PHFrvGGsvHLivNNQvgfTtp~~rG  372 (913)
T KOG0451|consen  293 MGKTRSRQQSRGEGDYSPDSSAPFGDHVLNVIVHGDAAFAGQGIVQECLNLSYVPHFRVGGSVHLIVNNQVGFTTPGDRG  372 (913)
T ss_pred             hcchhHHHHhhcCCCCCCCCcCCCCCceEEEEEecchhhccCcccHHHHhhccCCceeecceEEEEecccccccCccccc
Confidence            999999776643211  0     11122457789999985 99999999998766655   7999999999999999888


Q ss_pred             ccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCCCCCCCCCHHHHHHHhcCCh
Q 013928          274 TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAARDP  353 (434)
Q Consensus       274 ~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~~D~~~yR~~~e~~~~~~~DP  353 (434)
                      +++..++++++++++++++|+|+|+++|.++.+-|+++-|++++.++|++.|||.+||++.|++.|++|-+++...+|..
T Consensus       373 RSs~ycsDiaK~~~~pviHVNGD~PEevvraTrLAf~Yqr~FRKDvfIdL~CfRrwgHnelddp~ftspvmyk~v~aReS  452 (913)
T KOG0451|consen  373 RSSAYCSDIAKSIQAPVIHVNGDDPEEVVRATRLAFRYQREFRKDVFIDLNCFRRWGHNELDDPTFTSPVMYKEVEARES  452 (913)
T ss_pred             ccchhhhHHHHHhCCCEEEeCCCCHHHHHHHHHHHHHHHHHhhhhheeehHHHHHhccccccCccccChhHHHHHHhhhc
Confidence            88899999999999999999999999999999999999999999999999999999999999999999999999998876


Q ss_pred             HH-HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 013928          354 IT-ALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPP  397 (434)
Q Consensus       354 l~-~~~~~L~~~G~~te~e~~~i~~e~~~~v~~a~~~A~~~p~p~  397 (434)
                      ++ .|.+.|++.|++|++++++++.++.+.+.+.++.+....+|+
T Consensus       453 vPdlya~~L~~eg~~tee~vkE~~~~y~~~Ln~eL~~~~~y~Pp~  497 (913)
T KOG0451|consen  453 VPDLYAQQLAKEGVLTEEKVKEMRDEYMKYLNEELALAPAYQPPP  497 (913)
T ss_pred             ccHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCccCCCc
Confidence            65 679999999999999999999999999999999888754444

>PRK12754 transketolase; Reviewed

Probab=99.94  E-value=2.3e-25  Score=242.04  Aligned_cols=143  Identities=24%  Similarity=0.277  Sum_probs=126.2

Q ss_pred             CcccCCcccccccchhhHHHHHHHHHHHhhhhhcC---CCceEEEEeCccccccchHHHHHHHHHHcCCC-eEEEEEcCC
Q 013928          188 HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEAD---CDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNL  263 (434)
Q Consensus       188 ~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~---~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vI~VV~NN~  263 (434)
                      .++...+|++|+|++.|+|+|+|.|+++.+++..+   .+.+|+|++|||++++|.+||++++|+.|+|| +|+||+||+
T Consensus       107 pgve~stG~LGqGl~~AvG~AlA~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivD~N~  186 (663)
T PRK12754        107 AGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNG  186 (663)
T ss_pred             CCccccCCcccchHHHHHHHHHHHHHhhhccCcccccccCCEEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEEcCC
Confidence            46778899999999999999999999875555433   37899999999999999999999999999999 889999999


Q ss_pred             ccCcccccccccCchhhhccccCCCcEEE-EeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCC
Q 013928          264 WAIGMSHLRATSDPQIYKKGPAFGMPGFH-VDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA  334 (434)
Q Consensus       264 y~is~~~~~~~~~~d~~~~a~a~Gi~~~~-VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~~  334 (434)
                      |++++++.... ..++.+++++|||++++ |||+|+.++.+|+++|..   ..++|++|+++|++++|.+..
T Consensus       187 ~~idg~~~~~~-~~~~~~r~~a~Gw~vi~vvDG~D~~ai~~A~~~a~~---~~~~Pt~I~~~T~~g~G~~~~  254 (663)
T PRK12754        187 ISIDGHVEGWF-TDDTAMRFEAYGWHVIRGIDGHDADSIKRAVEEARA---VTDKPSLLMCKTIIGFGSPNK  254 (663)
T ss_pred             CccCcchhhcc-CccHHHHHHhcCCeEEeeECCCCHHHHHHHHHHHHh---cCCCCEEEEEEeeeccCcccc
Confidence            99999987765 57999999999999999 899999999887766542   257899999999999999854

>TIGR00232 tktlase_bact transketolase, bacterial and yeast

Probab=99.93  E-value=6.1e-25  Score=239.54  Aligned_cols=143  Identities=25%  Similarity=0.335  Sum_probs=124.4

Q ss_pred             CcccCCcccccccchhhHHHHHHHHHHHhhhhhc---CCCceEEEEeCccccccchHHHHHHHHHHcCCC-eEEEEEcCC
Q 013928          188 HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEA---DCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNL  263 (434)
Q Consensus       188 ~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~---~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vI~VV~NN~  263 (434)
                      .++...+|++|+|++.|+|+|+|.|+++.+++..   ..+.+|+|++|||++++|.+||++++|+.|+|| +|+||+||+
T Consensus       103 ~gi~~~tG~lG~gl~~AvG~Ala~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~EG~~~EA~~~A~~~~L~nLi~ivd~N~  182 (653)
T TIGR00232       103 AGVEATTGPLGQGIANAVGMAIAQKTLAATFNKPGFEIVDHYTYVFVGDGCLQEGISYEVASLAGHLKLGKLIVLYDSNR  182 (653)
T ss_pred             CCeeeCCcchhccHHHHHHHHHHHHHHhhhccCCccCCcCCEEEEEEccccccccHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence            4677789999999999999999999886544321   247889999999999999999999999999999 888999999


Q ss_pred             ccCcccccccccCchhhhccccCCCcEEEE-eCCCHHHHHHHHHHHHHHHHcc-CCCEEEEEEEecCCCCCCCC
Q 013928          264 WAIGMSHLRATSDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRG-EGPTLVECETYRFRGHSLAD  335 (434)
Q Consensus       264 y~is~~~~~~~~~~d~~~~a~a~Gi~~~~V-dG~D~~av~~a~~~Al~~ar~~-~gP~lIev~t~R~~gHs~~D  335 (434)
                      |++++++.... ..++.+++++|||++++| ||+|+.++.+|+++|    +.. ++|++|+++|+|++|.+..+
T Consensus       183 ~~i~~~~~~~~-~~~~~~~~~a~Gw~~~~v~DG~D~~ai~~A~~~a----~~~~~~P~~I~~~T~~g~G~~~~e  251 (653)
T TIGR00232       183 ISIDGAVDGSF-TEDVAKRFEAYGWEVLEVEDGHDLAAIDAAIEEA----KASKDKPTLIEVTTTIGFGSPNKA  251 (653)
T ss_pred             eeecccccccc-CccHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHH----HhCCCCCEEEEEEeeecccCcccC
Confidence            99999987765 578999999999999999 999999998866544    455 48999999999999987543

This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.

>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]

Probab=99.93  E-value=1.5e-24  Score=228.15  Aligned_cols=283  Identities=19%  Similarity=0.236  Sum_probs=192.4

Q ss_pred             CCEEEccCcchHHHHH------cC--CCHHHH--HHHHhcCCCCCccCCCCCcccccCCCcccCCcccccccchhhHHHH
Q 013928          139 EDSVVSTYRDHVHALS------KG--VPARAV--MSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAA  208 (434)
Q Consensus       139 ~D~v~~~yR~~~~~La------~G--~~~~~i--~~el~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~glp~AvGaA  208 (434)
                      .|.++.+ -||+-+|.      .|  ++++++  |+|+-++.+|+.-        +....++...+|+||+|++.|+|+|
T Consensus        59 RDRFVLS-aGHgSmllYsllhl~Gy~ls~edLk~FRQ~~SkTpGHPE--------~~~t~GVe~TTGPLGQGianAVGmA  129 (663)
T COG0021          59 RDRFVLS-AGHGSMLLYSLLHLTGYDLSLEDLKNFRQLGSKTPGHPE--------YGHTPGVEATTGPLGQGLANAVGMA  129 (663)
T ss_pred             CccEEec-CCchhHHHHHHHHHccCCCCHHHHHhhccCCCCCCCCCC--------cCCCCCeEeccCccchhHHHHHHHH
Confidence            4544433 26776543      34  577777  7777777776541        1223467788999999999999999


Q ss_pred             HHHHHHHhhhhhcC---CCceEEEEeCccccccchHHHHHHHHHHcCCC-eEEEEEcCCccCcccccccccCchhhhccc
Q 013928          209 FTSKYRREVLKEAD---CDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWAIGMSHLRATSDPQIYKKGP  284 (434)
Q Consensus       209 ~A~k~~~~~~~~~~---~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vI~VV~NN~y~is~~~~~~~~~~d~~~~a~  284 (434)
                      +|.++....+++++   -|+.|+|++|||++++|+.+|+..+|+.++|. +|++.++|.++|...+.... +.|..++++
T Consensus       130 lAe~~La~~fn~~g~~ivdh~tYvl~GDGclmEGvs~EA~slAG~l~L~kLIvlyD~N~IsiDG~~~~~f-~ed~~~Rfe  208 (663)
T COG0021         130 LAEKHLAALFNRPGFDIVDHYTYVLVGDGCLMEGVSHEAASLAGHLKLGKLIVLYDSNDISIDGDTSLSF-TEDVAKRFE  208 (663)
T ss_pred             HHHHHHHhhhCCCCCccccceEEEEecCchHhcccHHHHHHHHhhcCCCcEEEEEeCCCceeccCccccc-chhHHHHHH
Confidence            99999988876544   46889999999999999999999999999999 88899999999988776554 679999999


Q ss_pred             cCCCcEE-EEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCC-CCCCCCC----CHHHHHHHhc---CC--h
Q 013928          285 AFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSL-ADPDELR----DPAEKARYAA---RD--P  353 (434)
Q Consensus       285 a~Gi~~~-~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~-~D~~~yR----~~~e~~~~~~---~D--P  353 (434)
                      +|||.++ .+||+|++++..|+++|..   ..++|++|+|+|..++|-+. .+..++.    .++|++..++   .+  |
T Consensus       209 AyGW~vi~~~DG~D~e~I~~Ai~~Ak~---~~dkPtlI~~kTiIG~Gsp~kegt~~~HGapLg~~ev~~~k~~lgw~~~~  285 (663)
T COG0021         209 AYGWNVIRVIDGHDLEAIDKAIEEAKA---STDKPTLIIVKTIIGKGSPNKEGTHKVHGAPLGEEEVAAAKKALGWEPEP  285 (663)
T ss_pred             hcCCeEEEecCCCCHHHHHHHHHHHHh---cCCCCeEEEEEeeeecCCCCcCCCccccCCCCCHHHHHHHHHHhCCCCCc
Confidence            9999999 7899999999887666542   36799999999999999876 3333322    3455544322   12  2


Q ss_pred             ----HHHHH--HHHHHcCCCCHHHHHHHHHHHHHH---HHHHHHHhhhCCCCCcchhhhcccCC-CC-CCCCCCCCc---
Q 013928          354 ----ITALK--KYLIESSLASEAELKAIEKKIDEV---VEDAVEFADESAPPPRSQLLENVFAD-PK-GFGIGPDGR---  419 (434)
Q Consensus       354 ----l~~~~--~~L~~~G~~te~e~~~i~~e~~~~---v~~a~~~A~~~p~p~~~~l~~~vya~-~~-~~~~~~~~~---  419 (434)
                          -..+.  +...+.|.-.+++|++.-+.+++.   ..+.++.......|..-+.+-..|.. +. -+++..+|+   
T Consensus       286 F~vp~ev~~~~~~~~~~g~~~~~~W~~~~~~y~~~~Pe~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~~ATR~as~~~L~  365 (663)
T COG0021         286 FEVPEEVYAAFRAVEERGAKAEAAWNELFAAYKKKYPELAAEFERRLNGELPANWAAFLPKFEANGKSIATRKASGKALN  365 (663)
T ss_pred             eecCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhChHHHHHHHHHhcccCchhHHHhhhhhcccccccchHHHHHHHHH
Confidence                12221  122334433345555444444432   22223333333333221111111211 12 246666666   


Q ss_pred             -ccccCCCcccccCCC
Q 013928          420 -YRCEDPKFTEGTAHV  434 (434)
Q Consensus       420 -~~~~~~~~~~~~~~~  434 (434)
                       +....|.+++|+|||
T Consensus       366 ~l~~~~p~l~GGSADL  381 (663)
T COG0021         366 ALAKKLPELIGGSADL  381 (663)
T ss_pred             HHHhhCccccccCccc
Confidence             889999999999996

>PRK12753 transketolase; Reviewed

Probab=99.92  E-value=4.9e-24  Score=232.60  Aligned_cols=143  Identities=22%  Similarity=0.254  Sum_probs=124.4

Q ss_pred             CcccCCcccccccchhhHHHHHHHHHHHhhhhhcC---CCceEEEEeCccccccchHHHHHHHHHHcCCC-eEEEEEcCC
Q 013928          188 HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEAD---CDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNL  263 (434)
Q Consensus       188 ~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~---~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vI~VV~NN~  263 (434)
                      .++...+|++|+|++.|+|+|+|.|+++..++...   .+.+|+|++|||++++|.+||++++|+.|+|| +|+||+||+
T Consensus       107 pgve~~tG~lG~gl~~AvG~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivd~N~  186 (663)
T PRK12753        107 PGVETTTGPLGQGLANAVGLAIAERTLAAQFNRPGHEIVDHYTYVFMGDGCLMEGISHEVCSLAGTLGLGKLIGFYDHNG  186 (663)
T ss_pred             CCcccCCCcccccHHHHHHHHHHHHHhhhhcCCccccccCCEEEEEECcCccccHHHHHHHHHHHHHCCCCEEEEEECCC
Confidence            46677899999999999999999998864332211   26799999999999999999999999999998 899999999


Q ss_pred             ccCcccccccccCchhhhccccCCCcEEE-EeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCC
Q 013928          264 WAIGMSHLRATSDPQIYKKGPAFGMPGFH-VDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA  334 (434)
Q Consensus       264 y~is~~~~~~~~~~d~~~~a~a~Gi~~~~-VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~~  334 (434)
                      |+++++..... ..++.+++++|||+++. |||+|+.++++++++|.+   ..++|++|+++|++++|++..
T Consensus       187 ~~i~~~~~~~~-~~~~~~~f~a~Gw~~~~~vDGhD~~~i~~a~~~a~~---~~~~P~~I~~~T~kG~G~~~~  254 (663)
T PRK12753        187 ISIDGETEGWF-TDDTAKRFEAYHWHVIHEIDGHDPQAIKEAILEAQS---VKDKPSLIICRTIIGFGSPNK  254 (663)
T ss_pred             CcCCCChhhhc-ChhHHHHHHHcCCeEEceeCCCCHHHHHHHHHHHHH---CCCCeEEEEEEEeecCCCCcc
Confidence            99999887654 57899999999999995 999999999998887653   357899999999999999865

>PLN02790 transketolase

Probab=99.92  E-value=1.5e-23  Score=228.74  Aligned_cols=143  Identities=25%  Similarity=0.299  Sum_probs=121.9

Q ss_pred             CcccCCcccccccchhhHHHHHHHHHHHhhhhhcC---CCceEEEEeCccccccchHHHHHHHHHHcCCC-eEEEEEcCC
Q 013928          188 HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEAD---CDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNL  263 (434)
Q Consensus       188 ~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~---~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vI~VV~NN~  263 (434)
                      .++...+|++|++++.|+|+|+|.|+++.+++..+   .+.+|+|++|||++++|.+||++|+|+.|+|| +|+||+||+
T Consensus        98 pgi~~~tG~lG~gl~~A~G~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~nli~i~d~N~  177 (654)
T PLN02790         98 PGIEVTTGPLGQGIANAVGLALAEKHLAARFNKPDHKIVDHYTYCILGDGCQMEGISNEAASLAGHWGLGKLIVLYDDNH  177 (654)
T ss_pred             CCccccCCchhchHHHHHHHHHHHHHHHHHhCCCcccccCCEEEEEECcCcccchHHHHHHHHHHHhCCCCEEEEEecCC
Confidence            36778899999999999999999997643222111   36789999999999999999999999999998 899999999


Q ss_pred             ccCcccccccccCchhhhccccCCCcEEEEeC--CCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCC
Q 013928          264 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDG--MDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA  334 (434)
Q Consensus       264 y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG--~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~~  334 (434)
                      |+|+++...+. ..++.+++++|||+++.|||  +|+.++++++++|.+   ..++|++|+++|++++|.+..
T Consensus       178 ~~i~~~~~~~~-~~~~~~~f~a~G~~~~~vdgg~hd~~~l~~a~~~a~~---~~~~P~lI~~~T~kG~G~~~~  246 (654)
T PLN02790        178 ISIDGDTEIAF-TEDVDKRYEALGWHTIWVKNGNTDYDEIRAAIKEAKA---VTDKPTLIKVTTTIGYGSPNK  246 (654)
T ss_pred             ccccCCccccc-chhHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHh---cCCCeEEEEEEEeecCCCccc
Confidence            99999887544 56889999999999999988  899999887766542   167999999999999998854

>PTZ00089 transketolase; Provisional

Probab=99.92  E-value=2.4e-23  Score=227.36  Aligned_cols=223  Identities=19%  Similarity=0.164  Sum_probs=160.0

Q ss_pred             ccccCCCChHHHHHHHH-HhcC---------CCCEE-Ec-cCcc---hHHHHHcCC--CHHHHHHHHhcCCCCCccCCCC
Q 013928          117 GFVHLYNGQEAVSTGFI-KLLK---------KEDSV-VS-TYRD---HVHALSKGV--PARAVMSELFGKATGCCRGQGG  179 (434)
Q Consensus       117 G~~h~~~GqEa~~~g~~-~~L~---------~~D~v-~~-~yR~---~~~~La~G~--~~~~i~~el~g~~~g~~~G~gg  179 (434)
                      |+...+.|---+.+++- ..|+         +.|.+ ++ .|..   +++....|.  +.+++ ..+.+. .+..     
T Consensus        27 GH~g~~ls~~ei~~~L~~~~l~~~~~~~~~~~rDr~vls~GH~~~~lYa~l~l~G~~~~~~~l-~~fr~~-~s~~-----   99 (661)
T PTZ00089         27 GHPGAPMGMAPIAHILWSEVMKYNPKDPRWINRDRFVLSNGHASALLYSMLHLTGYDLSMEDL-KNFRQL-GSRT-----   99 (661)
T ss_pred             CCcchhhHHHHHHHHHHHHhhcCCCcCCCCCCCCEEEEeCcchHHHHHHHHHHcCCCCCHHHH-HhcCCC-CCCC-----
Confidence            55555666655555554 3554         34764 44 4555   334445674  44443 333321 1111     


Q ss_pred             Cccccc-CCCcccCCcccccccchhhHHHHHHHHHHHhhhhhc---CCCceEEEEeCccccccchHHHHHHHHHHcCCC-
Q 013928          180 SMHMFS-KEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEA---DCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-  254 (434)
Q Consensus       180 s~h~~~-~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~---~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-  254 (434)
                      +.|.-. ...++...+|++|++++.|+|+|+|.|+++.+++..   ..+.+|||++|||++++|.+||++++|+.++|| 
T Consensus       100 ~ghp~~~~~~gv~~~tG~lG~gls~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~v~GDG~l~eG~~~EAl~~A~~~~L~n  179 (661)
T PTZ00089        100 PGHPERHITPGVEVTTGPLGQGIANAVGLAIAEKHLAAKFNRPGHPIFDNYVYVICGDGCLQEGVSQEALSLAGHLGLEK  179 (661)
T ss_pred             CCCCCCCCCCCcccCCcchhhhHHHHHHHHHHHHHHhhhccCccccCcCCEEEEEECccchhhHHHHHHHHHHHHhCCCC
Confidence            112111 123455678999999999999999999876433321   126789999999999999999999999999998 


Q ss_pred             eEEEEEcCCccCcccccccccCchhhhccccCCCcEEEE-eCC-CHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCC
Q 013928          255 IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHV-DGM-DVLKVREVAKEAIERARRGEGPTLVECETYRFRGHS  332 (434)
Q Consensus       255 vI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~V-dG~-D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs  332 (434)
                      +|+||+||+|+++.+.... ...++.+++++|||+++.| ||+ |+.++++++++|.+.   .++|++|+++|+|++||.
T Consensus       180 Li~i~d~N~~~i~~~~~~~-~~~~~~~~f~a~G~~~i~v~dG~~D~~~l~~a~~~a~~~---~~~P~~I~~~T~kG~G~~  255 (661)
T PTZ00089        180 LIVLYDDNKITIDGNTDLS-FTEDVEKKYEAYGWHVIEVDNGNTDFDGLRKAIEEAKKS---KGKPKLIIVKTTIGYGSS  255 (661)
T ss_pred             EEEEEECCCcccccCcccc-cCccHHHHHHhcCCcEEEeCCCCCCHHHHHHHHHHHHhc---CCCcEEEEEEeeecCCCC
Confidence            8999999999999988654 3578899999999999999 999 999999988776532   268999999999999987


Q ss_pred             CCCCCC----CCCHHHHHHHhc
Q 013928          333 LADPDE----LRDPAEKARYAA  350 (434)
Q Consensus       333 ~~D~~~----yR~~~e~~~~~~  350 (434)
                      +.++..    +.+.++++.+.+
T Consensus       256 ~e~~~~~H~~~~~~~~~~~~~~  277 (661)
T PTZ00089        256 KAGTEKVHGAPLGDEDIAQVKE  277 (661)
T ss_pred             cCCCCCccCCCCCHHHHHHHHH
Confidence            666543    456677766543

>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates

Probab=99.90  E-value=1.1e-22  Score=198.48  Aligned_cols=137  Identities=26%  Similarity=0.360  Sum_probs=121.8

Q ss_pred             cccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCC-eEEEEEcCCccCc
Q 013928          189 NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWAIG  267 (434)
Q Consensus       189 ~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vI~VV~NN~y~is  267 (434)
                      ++...+|+||+++|+|+|+|+|.++.       +++++|||++|||++++|.+||+|++|+.++|| +++|++||+|+++
T Consensus        99 g~~~~~GslG~gl~~avG~Ala~~~~-------~~~~~v~~i~GDG~~~~G~~~eal~~a~~~~l~~li~vvdnN~~~~~  171 (255)
T cd02012          99 GVEVTTGSLGQGLSVAVGMALAEKLL-------GFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLIAIVDSNRIQID  171 (255)
T ss_pred             CeeeCCcchhhHHHHHHHHHHHHHHh-------CCCCEEEEEECcccccccHHHHHHHHHHHcCCCcEEEEEECCCcccc
Confidence            56667899999999999999998876       578999999999999999999999999999998 8999999999998


Q ss_pred             ccccccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCCC
Q 013928          268 MSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLAD  335 (434)
Q Consensus       268 ~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~~D  335 (434)
                      ..........++.+++++|||++++|||+|+.++.+++++|.+.   .++|++|+++|.++.||+..+
T Consensus       172 ~~~~~~~~~~~~~~~~~a~G~~~~~v~G~d~~~l~~al~~a~~~---~~~P~~I~~~t~kg~g~~~~e  236 (255)
T cd02012         172 GPTDDILFTEDLAKKFEAFGWNVIEVDGHDVEEILAALEEAKKS---KGKPTLIIAKTIKGKGVPFME  236 (255)
T ss_pred             CcHhhccCchhHHHHHHHcCCeEEEECCCCHHHHHHHHHHHHHc---CCCCEEEEEEeecccccCccC
Confidence            77655556788999999999999999999999999988776532   278999999999999999654

In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.

>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis

Probab=99.89  E-value=2.7e-22  Score=188.47  Aligned_cols=124  Identities=24%  Similarity=0.289  Sum_probs=109.3

Q ss_pred             ccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCccc
Q 013928          190 LLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMS  269 (434)
Q Consensus       190 ~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~  269 (434)
                      +...+|++|+++|+|+|+|+|.|++       +.+++|||++|||++++|.+||+|++|+.+++|+++||+||+|+++++
T Consensus        70 ~~~~~G~lG~gl~~A~G~Ala~k~~-------~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~~~li~vvdnN~~~~~~~  142 (195)
T cd02007          70 DAFGTGHSSTSISAALGMAVARDLK-------GKKRKVIAVIGDGALTGGMAFEALNNAGYLKSNMIVILNDNEMSISPN  142 (195)
T ss_pred             ceECCCchhhhHHHHHHHHHHHHHh-------CCCCeEEEEEcccccccChHHHHHHHHHHhCCCEEEEEECCCcccCCC
Confidence            3457899999999999999999877       457899999999999999999999999999999999999999998876


Q ss_pred             ccccccCchhhhccccCCCcEEE-EeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCC
Q 013928          270 HLRATSDPQIYKKGPAFGMPGFH-VDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRG  330 (434)
Q Consensus       270 ~~~~~~~~d~~~~a~a~Gi~~~~-VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~g  330 (434)
                      +.      +..++++++||.+.. |||+|++++.+++++|    ++.++|++|+++|++++|
T Consensus       143 ~~------~~~~~~~a~G~~~~~~vdG~d~~~l~~a~~~a----~~~~~P~~I~~~T~kg~g  194 (195)
T cd02007         143 VG------TPGNLFEELGFRYIGPVDGHNIEALIKVLKEV----KDLKGPVLLHVVTKKGKG  194 (195)
T ss_pred             CC------CHHHHHHhcCCCccceECCCCHHHHHHHHHHH----HhCCCCEEEEEEEecccC
Confidence            54      466778899999885 9999999998876654    456799999999999887

Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).

>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2

Probab=99.89  E-value=7.6e-22  Score=198.96  Aligned_cols=145  Identities=24%  Similarity=0.344  Sum_probs=116.1

Q ss_pred             CcccCCcccccccchhhHHHHHHHHHHHhhhhhc---CCCceEEEEeCccccccchHHHHHHHHHHcCCC-eEEEEEcCC
Q 013928          188 HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEA---DCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNL  263 (434)
Q Consensus       188 ~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~---~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vI~VV~NN~  263 (434)
                      .++...+|+||+|++.|+|+|+|.|+.+.+++.+   ..++.|+|++|||++++|++||++.+|+.++|+ +|+||++|+
T Consensus       104 ~gie~stGsLGqGl~~avG~Ala~k~~~~~~n~~~~~~~~~~vy~l~GDGel~EG~~~EA~~~A~~~~L~nLi~i~D~N~  183 (332)
T PF00456_consen  104 PGIEASTGSLGQGLSIAVGMALAEKMLGARFNKPGFDIIDHRVYVLMGDGELQEGSVWEAASLAGHYKLDNLIVIYDSNG  183 (332)
T ss_dssp             TT-SS--SSTTHHHHHHHHHHHHHHHHHHHHHBTTBSTTT--EEEEEEHHHHHSHHHHHHHHHHHHTT-TTEEEEEEEES
T ss_pred             ceeEeeccchhcchhhHHHHHHHHHHHHhhhcccccccccceEEEEecCccccchhhHHHHHHHHHhCCCCEEEEEecCC
Confidence            4666779999999999999999999887655432   246789999999999999999999999999999 999999999


Q ss_pred             ccCcccccccccCchhhhccccCCCcEEEE-eCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCCCC
Q 013928          264 WAIGMSHLRATSDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADP  336 (434)
Q Consensus       264 y~is~~~~~~~~~~d~~~~a~a~Gi~~~~V-dG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~~D~  336 (434)
                      ..+...+.... ..++.+++++|||.+++| ||+|+.++++|+.+|..   ..++|++|.++|.+++|.+....
T Consensus       184 ~q~dg~~~~~~-~~~~~~k~~a~Gw~v~~v~dGhd~~~i~~A~~~a~~---~~~kP~~Ii~~TvkG~G~~~~e~  253 (332)
T PF00456_consen  184 IQIDGPTDIVF-SEDIAKKFEAFGWNVIEVCDGHDVEAIYAAIEEAKA---SKGKPTVIIARTVKGKGVPFMEG  253 (332)
T ss_dssp             EETTEEGGGTH-HSHHHHHHHHTT-EEEEEEETTBHHHHHHHHHHHHH---STSS-EEEEEEE-TTTTSTTTTT
T ss_pred             cccCCCccccc-chHHHHHHHHhhhhhcccccCcHHHHHHHHHHHHHh---cCCCCceeecceEEecCchhhcc
Confidence            89988775433 468899999999999998 99999999987776532   33799999999999999976543

2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....

>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]

Probab=99.88  E-value=3.6e-21  Score=180.16  Aligned_cols=216  Identities=21%  Similarity=0.242  Sum_probs=154.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHH-HHHHHHhcC--C-------CCEEEccCcchH---HH--HH
Q 013928           90 LELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAV-STGFIKLLK--K-------EDSVVSTYRDHV---HA--LS  154 (434)
Q Consensus        90 l~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~-~~g~~~~L~--~-------~D~v~~~yR~~~---~~--La  154 (434)
                      .++-+....+|.---++  ++..|  .|+++.+...--+ ++.....|+  |       .|+++.+ .||+   .+  |+
T Consensus         8 ~~L~~~A~~iRr~~v~m--~~~~~--~GH~G~SLS~~eILa~LYf~~m~~~p~~p~~~~RDrfiLS-KGHaa~AlYa~La   82 (243)
T COG3959           8 DELERIAREIRRNIVRM--LANAG--SGHVGGSLSVVEILAVLYFKIMNIDPDDPKWPGRDRFILS-KGHAAPALYATLA   82 (243)
T ss_pred             HHHHHHHHHHHHHHHHH--hcccC--CCCcCccchHHHHHHHHHHHHhccCCCCCCCCCCCeEEEe-cccchHHHHHHHH
Confidence            34444445566554332  23333  3666666666444 333444432  3       5666664 3444   22  33


Q ss_pred             -cCCCHHHHHHHHhcCCCCCccCCCCCccccc-CCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeC
Q 013928          155 -KGVPARAVMSELFGKATGCCRGQGGSMHMFS-KEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFG  232 (434)
Q Consensus       155 -~G~~~~~i~~el~g~~~g~~~G~ggs~h~~~-~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~G  232 (434)
                       +|+-+++-+..+. +..+.     -+.|.-. ...++..++|+||+|+++|+|+|++.|++       +.+..|++++|
T Consensus        83 e~G~~p~eeL~~~~-~~~sr-----L~~Hp~~~~~pgve~stGSLGqGLsvavGmAlg~kl~-------~~~~~VyvilG  149 (243)
T COG3959          83 EKGYFPEEELETFR-RIGSR-----LPGHPERNKTPGVEVSTGSLGQGLSVAVGMALGAKLK-------GSPYRVYVILG  149 (243)
T ss_pred             HcCCCCHHHHHHhc-cCCCc-----CCCCCccCCCCceeecCCcccccchHHHHHHHHHhhc-------CCCceEEEEec
Confidence             7876666665433 22211     1233221 33467778999999999999999999988       56789999999


Q ss_pred             ccccccchHHHHHHHHHHcCCC-eEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHH
Q 013928          233 DGTCNNGQFFECLNMAALWKLP-IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIER  311 (434)
Q Consensus       233 DGa~~~G~~~EaLn~A~~~~LP-vI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~  311 (434)
                      ||.+++|++||++.+|++|+|. +|.||+-|...++..+.+..+..++.+++++|||.+++|||+|++++.+++..    
T Consensus       150 DGEl~EG~~WEAam~Aah~~L~NLiaivD~N~~QldG~t~~i~~~~pL~~k~eAFGw~V~evdG~d~~~i~~a~~~----  225 (243)
T COG3959         150 DGELDEGQVWEAAMTAAHYKLDNLIAIVDRNKLQLDGETEEIMPKEPLADKWEAFGWEVIEVDGHDIEEIVEALEK----  225 (243)
T ss_pred             CcccccccHHHHHHHHHHhccCcEEEEEecCCcccCCchhhccCcchhHHHHHhcCceEEEEcCcCHHHHHHHHHh----
Confidence            9999999999999999999999 88888877778888887777788999999999999999999999999886554    


Q ss_pred             HHc-cCCCEEEEEEEec
Q 013928          312 ARR-GEGPTLVECETYR  327 (434)
Q Consensus       312 ar~-~~gP~lIev~t~R  327 (434)
                      ++. .++|++|.++|.+
T Consensus       226 ~~~~~~rP~~IIa~Tvk  242 (243)
T COG3959         226 AKGSKGRPTVIIAKTVK  242 (243)
T ss_pred             hhccCCCCeEEEEeccc
Confidence            444 3499999999865

>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase

Probab=99.88  E-value=6.9e-22  Score=214.43  Aligned_cols=234  Identities=21%  Similarity=0.219  Sum_probs=164.9

Q ss_pred             HhhcCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcC-CCCEEEc--cCcch
Q 013928           73 EKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLK-KEDSVVS--TYRDH  149 (434)
Q Consensus        73 ~~~~~~~~~~~~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~-~~D~v~~--~yR~~  149 (434)
                      ++|+.+..-..++.++|.++-.. +|.+.++.  ..  .+   .|+...+.|---+.+++...++ +.|.++.  .|...
T Consensus         2 ~~i~~p~dl~~l~~~~l~~la~~-iR~~~i~~--~~--~~---~GH~g~~ls~vel~~aL~~~~~~~rDr~i~s~GH~~Y   73 (617)
T TIGR00204         2 SLINSPQELRLLSIDELEKLCDE-LRRYLLES--VS--AS---GGHLASGLGTVELTVALHYVFNTPKDQFIWDVGHQAY   73 (617)
T ss_pred             CCCCCHHHHhhCCHHHHHHHHHH-HHHHHHHH--Hh--cc---CCCcCcchhHHHHHHHHHhhCCCCCCcEEEecchHHH
Confidence            45666666667777777666533 33343432  11  12   3666667887666677777777 5776655  57777


Q ss_pred             HHHHHcCCCHHHHHHHHhcCCCCCccCCCCCcccccCCCccc-CCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEE
Q 013928          150 VHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLL-GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTL  228 (434)
Q Consensus       150 ~~~La~G~~~~~i~~el~g~~~g~~~G~ggs~h~~~~~~~~~-~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv  228 (434)
                      ++.+..|. . +-|..+....     |.+  .|....+..+. ...|++|+++++|+|+|+|.|++       +.+.+|+
T Consensus        74 ~~~~~~G~-~-~~l~~~r~~g-----~l~--g~p~~~e~~~d~~~~G~~g~~ls~a~G~A~a~~~~-------~~~~~v~  137 (617)
T TIGR00204        74 PHKLLTGR-R-EKFSTLRQKK-----GLH--GFPKRSESEYDVFSAGHSSTSISAGLGIAVAAEKK-------GADRKTV  137 (617)
T ss_pred             HHHHHhCc-H-HHhcchhhcC-----CcC--CCCcCCCCCCCccCCCchHhHHHHHHHHHHHHHhh-------CCCCEEE
Confidence            77777886 2 2233322211     111  12211112222 36788999999999999999987       5688999


Q ss_pred             EEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCccccccccc------------------------Cc---h-hh
Q 013928          229 AFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATS------------------------DP---Q-IY  280 (434)
Q Consensus       229 ~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~------------------------~~---d-~~  280 (434)
                      |++|||++++|.+||+||+|+.++||+|+||+||+|+++++...+..                        .+   + +.
T Consensus       138 ~~~GDG~~~eG~~~Ea~~~a~~~~l~~i~ii~~N~~~i~~~~~~~~~~l~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~  217 (617)
T TIGR00204       138 CVIGDGAITAGMAFEALNHAGDLKTDMIVILNDNEMSISENVGALSNHLAQLRSGSLYQSLRDGLKKIFSKLPPIKNYLA  217 (617)
T ss_pred             EEECCcccccccHHHHHHHHHhcCCCEEEEEECCCcccCCCchHHHHHHHHhhccchHHHHHHHHHHHHhcCcchhHHHH
Confidence            99999999999999999999999999999999999999987642210                        00   1 32


Q ss_pred             hc--------------cccCCCcEE-EEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCC
Q 013928          281 KK--------------GPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA  334 (434)
Q Consensus       281 ~~--------------a~a~Gi~~~-~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~~  334 (434)
                      ++              +++|||.++ .|||+|+.++.++++    .++..++|++|+++|.|++|.+..
T Consensus       218 ~~~~~~~k~~~~~~~~f~~~G~~~~~~vDGhd~~~l~~al~----~ak~~~~P~~i~~~T~KGkG~~~~  282 (617)
T TIGR00204       218 KRTEESMKGLVVPGTFFEELGFNYIGPVDGHDLLELIETLK----NAKKLKGPVFLHIQTKKGKGYKPA  282 (617)
T ss_pred             HHHHHhhhhccCccchHHHcCCcEEcccCCCCHHHHHHHHH----HHhcCCCCEEEEEEecCCCCCchh
Confidence            33              889999999 899999999998665    455667899999999999997765

DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).

>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional

Probab=99.88  E-value=1.1e-21  Score=211.85  Aligned_cols=237  Identities=19%  Similarity=0.167  Sum_probs=165.1

Q ss_pred             HHHhhcCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcC-CCCEEEc--cCc
Q 013928           71 VKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLK-KEDSVVS--TYR  147 (434)
Q Consensus        71 ~~~~~~~~~~~~~~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~-~~D~v~~--~yR  147 (434)
                      +.++|+.+..-.+++.++|.++-.. +|.+.++.  ..   .+  .|+...+.|.=-+.+++-..++ +.|.++-  .|.
T Consensus         6 ~~~~~~~~~~~~~~~~~~l~~~a~~-iR~~~~~~--~~---~~--~gH~g~~ls~~~i~~~L~~~~~~~rDr~ils~GH~   77 (580)
T PRK05444          6 LLDTINSPADLKKLSEEELPQLADE-IREFLIDV--VS---KT--GGHLGSNLGVVELTVALHYVFDTPKDRIIWDVGHQ   77 (580)
T ss_pred             hhhccCCHHHHhcCCHHHHHHHHHH-HHHHHHHH--HH---hc--CCCcCCCccHHHHHHHHHHhcCCCCccEEEeccHH
Confidence            4677888777777888776655333 33333332  22   21  3565556776555555555554 4565544  455


Q ss_pred             chHHHHHcCCCHHHHHHHHhcCCCCCccCCCCCcccccC-CCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCce
Q 013928          148 DHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSK-EHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHV  226 (434)
Q Consensus       148 ~~~~~La~G~~~~~i~~el~g~~~g~~~G~ggs~h~~~~-~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~  226 (434)
                      +.++....|. .++ +..+... .+    .  +.|.... ..++...+|++|+++|+|+|+|+|.|+++      +++++
T Consensus        78 ~y~~~~~~g~-~~~-l~~~~~~-~s----~--~g~p~~~~~~~~~~~~G~lG~gl~~AvG~A~a~~~~~------~~~~~  142 (580)
T PRK05444         78 AYPHKILTGR-RDR-FDTLRQK-GG----L--SGFPKRSESEYDTFGAGHSSTSISAALGMAKARDLKG------GEDRK  142 (580)
T ss_pred             HHHHHHHhCc-HHH-hcCcccC-CC----C--CCCCCCCCCCCeeECCChHHHHHHHHHHHHHHHHhhC------CCCCe
Confidence            5445555665 222 2222111 11    1  1232211 13556678999999999999999988762      36789


Q ss_pred             EEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCccccccc---ccCchhhhccccCCCcEE-EEeCCCHHHHH
Q 013928          227 TLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA---TSDPQIYKKGPAFGMPGF-HVDGMDVLKVR  302 (434)
Q Consensus       227 vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~---~~~~d~~~~a~a~Gi~~~-~VdG~D~~av~  302 (434)
                      |+|++|||++++|.+||+|++|+.+++|+++|++||+|+++.+....   ....++.+++++|||+++ .|||+|+.+++
T Consensus       143 v~~i~GDG~l~eG~~~Eal~~A~~~~~nli~IvdnN~~~i~~~~~~~~~~~~~~~~~~~~~a~G~~~~~~vdG~d~~~l~  222 (580)
T PRK05444        143 VVAVIGDGALTGGMAFEALNNAGDLKSDLIVILNDNEMSISPNVGALSNYLARLRSSTLFEELGFNYIGPIDGHDLDALI  222 (580)
T ss_pred             EEEEEcccccccCHHHHHHHHHHhhCCCEEEEEECCCCcCCCcchhhhhhhccccHHHHHHHcCCCeeeeeCCCCHHHHH
Confidence            99999999999999999999999999999999999999988776433   123456688999999999 59999999998


Q ss_pred             HHHHHHHHHHHccCCCEEEEEEEecCCCCCCC
Q 013928          303 EVAKEAIERARRGEGPTLVECETYRFRGHSLA  334 (434)
Q Consensus       303 ~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~~  334 (434)
                      +++++    ++..++|++|+++|.|++|.+..
T Consensus       223 ~al~~----a~~~~~P~lI~~~T~kg~G~~~~  250 (580)
T PRK05444        223 ETLKN----AKDLKGPVLLHVVTKKGKGYAPA  250 (580)
T ss_pred             HHHHH----HHhCCCCEEEEEEecCCcCCChh
Confidence            86664    44567999999999999998754

>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E

Probab=99.88  E-value=6.3e-21  Score=193.66  Aligned_cols=209  Identities=20%  Similarity=0.179  Sum_probs=151.0

Q ss_pred             ccccCCCChHHHHHHH-HHhcCC------CCEEEccCcchHH------HHHcCC-CHHHHHHHHhcCCCCCccCCCCCcc
Q 013928          117 GFVHLYNGQEAVSTGF-IKLLKK------EDSVVSTYRDHVH------ALSKGV-PARAVMSELFGKATGCCRGQGGSMH  182 (434)
Q Consensus       117 G~~h~~~GqEa~~~g~-~~~L~~------~D~v~~~yR~~~~------~La~G~-~~~~i~~el~g~~~g~~~G~ggs~h  182 (434)
                      |+...+.+.--+.+++ ...|+.      .|.|++  .+|+.      ....|. +.++ +..+......  .+-.+..+
T Consensus        31 GH~G~slS~adI~~aLy~~~l~~~p~~~~RDRvlS--kGHas~~lYA~L~l~G~~~~ed-L~~fr~~gs~--p~l~g~p~  105 (386)
T cd02017          31 GHIATFASAATLYEVGFNHFFRARGEGGGGDLVYF--QGHASPGIYARAFLEGRLTEEQ-LDNFRQEVGG--GGLSSYPH  105 (386)
T ss_pred             CCCCcchhHHHHHHHHHHHhcCCCCCCCCCCEEEe--CCcccHHHHHHHHHcCCCCHHH-HHhhccCCCC--CCCCCCCC
Confidence            5544455554444444 456775      788665  45554      223674 4444 4444432110  01111111


Q ss_pred             cccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCC-eEEEEEc
Q 013928          183 MFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVEN  261 (434)
Q Consensus       183 ~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vI~VV~N  261 (434)
                      ......++...+|++|+|+++|+|+|+|.|+...+++..+.+..|+|++|||++++|++||++++|+.++|+ +|+||++
T Consensus       106 ~~~~~~gve~sTGSLGqGLs~AvGmAla~r~l~a~~~~~~~~~rvyvllGDGEl~EG~vwEA~~~Ag~~kL~NLivIvD~  185 (386)
T cd02017         106 PWLMPDFWEFPTVSMGLGPIQAIYQARFNRYLEDRGLKDTSDQKVWAFLGDGEMDEPESLGAIGLAAREKLDNLIFVVNC  185 (386)
T ss_pred             CCCCCCCeeeCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcccccccHHHHHHHHHHHHhCCCCEEEEEEC
Confidence            111122466788999999999999999999865544434567899999999999999999999999999997 9999999


Q ss_pred             CCccCccccccc-ccCchhhhccccCCCcEEEEe----------------------------------------------
Q 013928          262 NLWAIGMSHLRA-TSDPQIYKKGPAFGMPGFHVD----------------------------------------------  294 (434)
Q Consensus       262 N~y~is~~~~~~-~~~~d~~~~a~a~Gi~~~~Vd----------------------------------------------  294 (434)
                      |++++..++... ....++.+++++|||.++.||                                              
T Consensus       186 N~~qidG~t~~v~~~~e~l~~kf~AfGW~vi~V~~g~~~~~~f~~~gg~~l~~~~~~~~~~~~~~l~~~~~~~~r~~l~~  265 (386)
T cd02017         186 NLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGSKWDELLAKDGGGALRQRMEETVDGDYQTLKAKDGAYVREHFFG  265 (386)
T ss_pred             CCCccCCcccccccCchhHHHHHHhcCCEEEEEecCCcchhhhccCcchHHHHHHHhcccHHHHHHhhcchHHHHHHhcc
Confidence            999998887664 356789999999999999998                                              


Q ss_pred             -----------------------CCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCC
Q 013928          295 -----------------------GMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSL  333 (434)
Q Consensus       295 -----------------------G~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~  333 (434)
                                             |+|+.++.+|+.++.+   ..++|++|.++|.+++|.+.
T Consensus       266 ~~~~~~~~~~~~~d~~~~~~~~gGhD~~~i~~A~~~a~~---~~~kPt~Iia~TikG~G~~~  324 (386)
T cd02017         266 KYPELKALVTDLSDEDLWALNRGGHDPRKVYAAYKKAVE---HKGKPTVILAKTIKGYGLGA  324 (386)
T ss_pred             ccHHHHHHhhcccHHhhhhhccCCCCHHHHHHHHHHHHh---CCCCCeEEEEeCeecCCCCh
Confidence                                   9999999987765432   24689999999999999873

coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.

>PRK05899 transketolase; Reviewed

Probab=99.88  E-value=5.3e-21  Score=208.24  Aligned_cols=155  Identities=24%  Similarity=0.300  Sum_probs=126.6

Q ss_pred             cccCCcccccccchhhHHHHHHHHHHHhhhhhc---CCCceEEEEeCccccccchHHHHHHHHHHcCCC-eEEEEEcCCc
Q 013928          189 NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEA---DCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLW  264 (434)
Q Consensus       189 ~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~---~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vI~VV~NN~y  264 (434)
                      ++...+|+||+++|+|+|+|+|.++++.+++..   ..+++|||++|||++++|.+||+|++|+.++|| +++|++||+|
T Consensus       112 ~~~~~~G~lG~gl~~AiG~Ala~~~~~~~~~~~~~~~~~~~v~~v~GDG~~~~g~~~Eal~~A~~~~L~~li~v~dnN~~  191 (624)
T PRK05899        112 GVETTTGPLGQGLANAVGMALAEKYLAALFNRPGLDIVDHYTYVLCGDGDLMEGISHEACSLAGHLKLGNLIVIYDDNRI  191 (624)
T ss_pred             CeeeCCcchhhhHHHHHHHHHHHHHhhhhcCCccccCcCCeEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEECCCC
Confidence            455568999999999999999988775322211   127899999999999999999999999999999 8999999999


Q ss_pred             cCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCCCC-CCCCC--
Q 013928          265 AIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADP-DELRD--  341 (434)
Q Consensus       265 ~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~~D~-~~yR~--  341 (434)
                      +++.+... ...+++.+++++|||++++|||+|+.++.+++++|.    ..++|++|++.|+|++||+..++ ..|+.  
T Consensus       192 ~~~~~~~~-~~~~~~~~~~~a~G~~~~~VdG~d~~~l~~al~~a~----~~~~P~vI~v~t~kg~g~~~~e~~~~~H~~~  266 (624)
T PRK05899        192 SIDGPTEG-WFTEDVKKRFEAYGWHVIEVDGHDVEAIDAAIEEAK----ASTKPTLIIAKTIIGKGAPNKEGTHKVHGAP  266 (624)
T ss_pred             cccccccc-cccccHHHHhccCCCeEEEECCCCHHHHHHHHHHHH----hcCCCEEEEEEeEeccCCccccCCCcccCCC
Confidence            99877653 335789999999999999999999999999777665    34689999999999999986654 34543  


Q ss_pred             --HHHHHHH
Q 013928          342 --PAEKARY  348 (434)
Q Consensus       342 --~~e~~~~  348 (434)
                        +++++.+
T Consensus       267 ~~~~~~~~~  275 (624)
T PRK05899        267 LGAEEIAAA  275 (624)
T ss_pred             CCHHHHHHH
Confidence              3455444

>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O

Probab=99.87  E-value=6.1e-22  Score=188.73  Aligned_cols=186  Identities=15%  Similarity=0.155  Sum_probs=150.9

Q ss_pred             CCChHHHHHHHHHhcCC-CCEEEccCcchHHHHHcCCCHHHHHHHHhcCCCCCccCCCCCcccccCCCcccCCccccccc
Q 013928          122 YNGQEAVSTGFIKLLKK-EDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEG  200 (434)
Q Consensus       122 ~~GqEa~~~g~~~~L~~-~D~v~~~yR~~~~~La~G~~~~~i~~el~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~g  200 (434)
                      +.||++.++.+...|.. .|++|+.||.+..-      ++++|+++.     .+.|  .++|......++...+|+||++
T Consensus         1 g~GHg~~~l~a~l~l~G~~~~~~p~~~~~~~g------l~~lf~qfs-----~~gg--~psH~~~~tpGi~~~~G~LG~g   67 (227)
T cd02011           1 GPGHGGPAVLANLYLEGSYSEFYPEISQDEEG------MRKLFKQFS-----FPGG--IPSHAAPETPGSIHEGGELGYS   67 (227)
T ss_pred             CCChHHHHHHHHHHhcCCCccccccccccHHH------HHHHHHhcC-----CCCC--CCCCCcccCCCeeecccchhhH
Confidence            36999999888888887 59999999976522      266778762     1112  4678777777888999999999


Q ss_pred             chhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchH---HHHHHHHHHcCCC-eEEEEEcCCccCccccccc-cc
Q 013928          201 IPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQF---FECLNMAALWKLP-IVFVVENNLWAIGMSHLRA-TS  275 (434)
Q Consensus       201 lp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~---~EaLn~A~~~~LP-vI~VV~NN~y~is~~~~~~-~~  275 (434)
                      ++.|+|+|+.           +++.+|+|++|||++++|.+   |++..++..+++. |+.|++||+|+|++++... .+
T Consensus        68 Ls~A~G~a~d-----------~~d~iv~~vvGDGE~eeG~lA~~W~a~~~~~~~~~~~vLpIld~Ng~~i~~pt~~~~~~  136 (227)
T cd02011          68 LSHAYGAVFD-----------NPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKISNPTILARIS  136 (227)
T ss_pred             HHHHHHhhhc-----------CCCcEEEEEECcCHHHHHhHHHHHHhhhhhcccccCCeEEEEEcCCCcccCCccccccC
Confidence            9999999865           68899999999999999996   8888888888888 8889999999999998865 44


Q ss_pred             CchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHc-----------c---CCC--EEEEEEEecCCCC
Q 013928          276 DPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARR-----------G---EGP--TLVECETYRFRGH  331 (434)
Q Consensus       276 ~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~-----------~---~gP--~lIev~t~R~~gH  331 (434)
                      ..++.+++++|||+++.|||+|++++++++++|+++++.           .   .+|  =+|.++|.+++.-
T Consensus       137 ~e~l~~~~~~yG~~~~~VDG~D~~av~~~~a~a~~~~~~~i~~~~~~~~~~~~~~~~~wp~~~~~~~kg~~~  208 (227)
T cd02011         137 HEELEALFRGYGYEPYFVEGDDPETMHQAMAATLDWAIEEIKAIQKRAREGGDASRPRWPMIVLRTPKGWTG  208 (227)
T ss_pred             chhHHHHHHhCCCceEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCEEEEeCCCCCCC
Confidence            678999999999999999999999999999988886542           1   123  1566778777643

This enzyme requires divalent magnesium ions and TPP for activity.

>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase

Probab=99.87  E-value=4e-20  Score=204.19  Aligned_cols=242  Identities=17%  Similarity=0.149  Sum_probs=167.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCCh-HHHHHHHHHhcCC------CCEEEccCcchHHHH----
Q 013928           85 TKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQ-EAVSTGFIKLLKK------EDSVVSTYRDHVHAL----  153 (434)
Q Consensus        85 s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~Gq-Ea~~~g~~~~L~~------~D~v~~~yR~~~~~L----  153 (434)
                      .+.++.+-....++...++.-.......+++.|+..++.+- +.+.+.....|+.      +|+|++.  ||+..+    
T Consensus        70 gd~~~~~~~a~~iR~~a~~mv~~A~~~~~~~gGH~gs~lS~a~i~~vLy~~~lr~~~~~~~rD~Vlsk--GHasp~lYA~  147 (889)
T TIGR03186        70 GDLQLEERLAAILRWNALAMVVRANRAYGELGGHIASYASAADLFEVGFNHFFRAAGDASGGDLVYFQ--PHSAPGVYAR  147 (889)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcCcHHHHHHHHHHHHHhCCCCCCCCCCCEEEEC--CchHHHHHHH
Confidence            34455555566666555554322222234555665444443 2334455566764      6887764  455432    


Q ss_pred             --HcCC-CHHHHHHHHhcCCCCCccCCCCCcccccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEE
Q 013928          154 --SKGV-PARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAF  230 (434)
Q Consensus       154 --a~G~-~~~~i~~el~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~  230 (434)
                        ..|. +.++ +..+.....+  .|-.+..|....+-.+...+|+||.|++.|+|+|++.||...++.....+..|+|+
T Consensus       148 l~l~G~l~~e~-L~~fRq~~~~--~gl~~~phP~~~p~~ve~sTGSLGqGl~~AvG~Ala~kyl~~r~~~~~~~~rVy~l  224 (889)
T TIGR03186       148 AFLEGFLSDAQ-LAHYRQEIAG--PGLCSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQNRGLARTEGRKVWGF  224 (889)
T ss_pred             HHHcCCCCHHH-HHHhcCCCCC--CCCCCCCCcccCCCCeEcCCCCchHHHHHHHHHHHHHHHHhhccccCCCCceEEEE
Confidence              2674 5544 4455543221  12223334322112345578999999999999999999876432223457889999


Q ss_pred             eCccccccchHHHHHHHHHHcCCC-eEEEEEcCCccCccccccccc-CchhhhccccCCCcEEEE---------------
Q 013928          231 FGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWAIGMSHLRATS-DPQIYKKGPAFGMPGFHV---------------  293 (434)
Q Consensus       231 ~GDGa~~~G~~~EaLn~A~~~~LP-vI~VV~NN~y~is~~~~~~~~-~~d~~~~a~a~Gi~~~~V---------------  293 (434)
                      +|||++++|++||++.+|++++|+ +|+||++|...+..++..... ..++.+++++|||.+++|               
T Consensus       225 lGDGEl~EG~~wEA~~~Aa~~kLdNLi~IvD~N~~qlDG~t~~~~~~~e~l~~kf~a~GW~vi~v~wG~~wd~l~~~d~~  304 (889)
T TIGR03186       225 FGDGEMDEPESIGALSLAARERLDNLVFVINCNLQRLDGPVRGNGRIIDELESQFAGAGWNVIKVLWGSDWDALFARDAT  304 (889)
T ss_pred             EcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCccCCccccccccchHHHHHHHhCCCEEEEEeecCchHHhhccccc
Confidence            999999999999999999999998 999999999899888765333 468999999999999999               


Q ss_pred             ------------------------------------------------------eCCCHHHHHHHHHHHHHHHHccCCCE
Q 013928          294 ------------------------------------------------------DGMDVLKVREVAKEAIERARRGEGPT  319 (434)
Q Consensus       294 ------------------------------------------------------dG~D~~av~~a~~~Al~~ar~~~gP~  319 (434)
                                                                            +|+|+.+|++|+++|.+   ..++|+
T Consensus       305 ~~L~~~~~~~~dg~yq~~~~~~ga~~R~~ff~~~~~~~~lv~~~sD~~i~~l~rgGHD~~~i~~A~~~A~~---~~~~PT  381 (889)
T TIGR03186       305 GALARAFAHTVDGQFQTFSANDGAYNRARFFGQDPALAALVAHLSDEDIDRLRRGGHDARKLYAAYDRAVR---HEGRPT  381 (889)
T ss_pred             hHHHHHHHhcccHHHHHHhhcchHHHHHHhcCccHHHHHHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHh---CCCCCE
Confidence                                                                  59999999998887763   236899


Q ss_pred             EEEEEEecCCCCCCC
Q 013928          320 LVECETYRFRGHSLA  334 (434)
Q Consensus       320 lIev~t~R~~gHs~~  334 (434)
                      +|.++|.+++|.+..
T Consensus       382 vIla~TvkG~G~~~~  396 (889)
T TIGR03186       382 VILAKTMKGFGMGAI  396 (889)
T ss_pred             EEEEEeeecCCCCcc
Confidence            999999999997554

Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.

>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional

Probab=99.85  E-value=4.4e-20  Score=201.11  Aligned_cols=237  Identities=20%  Similarity=0.203  Sum_probs=163.0

Q ss_pred             HHHhhcCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcC-CCCEEEc--cCc
Q 013928           71 VKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLK-KEDSVVS--TYR  147 (434)
Q Consensus        71 ~~~~~~~~~~~~~~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~-~~D~v~~--~yR  147 (434)
                      ++++|+.+..-..++.++|.++-.. +|.+.+|.  ..  ..|   |+...+.|---+.+++...++ |.|.++.  .|.
T Consensus         8 ~l~~i~~p~dl~~l~~~~l~~~a~~-iR~~ii~~--~~--~~~---GH~g~~ls~vel~~aL~~~~~~prDr~i~s~GH~   79 (641)
T PRK12571          8 LLDRIKGPADLRALSDAELEQLADE-LRAEVISA--VS--ETG---GHLGSSLGVVELTVALHAVFNTPKDKLVWDVGHQ   79 (641)
T ss_pred             hhhhcCCHHHHHhCCHHHHHHHHHH-HHHHHHHH--HH--HhC---CCcCCCchHHHHHHHHHHhcCCCCCcEEEECchH
Confidence            5889998888888888887766433 33343432  22  222   666667887666666766665 5676554  577


Q ss_pred             chHHHHHcCCCHHHHHHHHhcCCCCCccCCCCCcccccCCC-cccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCce
Q 013928          148 DHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEH-NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHV  226 (434)
Q Consensus       148 ~~~~~La~G~~~~~i~~el~g~~~g~~~G~ggs~h~~~~~~-~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~  226 (434)
                      ..++.+..|.  .+-|..+.....     .+|  |....+. .-....++-+.+++.|+|+|+|.++.       ++++.
T Consensus        80 ~Y~~~~l~g~--~~~l~~~r~~~~-----l~g--~p~~~e~~~~~~~~g~~~gslg~a~G~A~a~~~~-------~~~~~  143 (641)
T PRK12571         80 CYPHKILTGR--RDRFRTLRQKGG-----LSG--FTKRSESEYDPFGAAHSSTSISAALGFAKARALG-------QPDGD  143 (641)
T ss_pred             HHHHHHHhCC--HHHHhhhhhCCC-----cCC--CCCCCcCCCCCcccCCCcChHHHHHHHHHHHHHh-------CCCCe
Confidence            7777777775  233333332211     111  1111110 10011233355678888888888776       56889


Q ss_pred             EEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCccccc-------ccccCchh--------------------
Q 013928          227 TLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHL-------RATSDPQI--------------------  279 (434)
Q Consensus       227 vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~-------~~~~~~d~--------------------  279 (434)
                      |+|++|||++++|.+||++++|+.+++|+++|++||+|+++.+..       .......+                    
T Consensus       144 v~~v~GDG~~~eG~~~Eal~~a~~~~~~li~I~dnN~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (641)
T PRK12571        144 VVAVIGDGSLTAGMAYEALNNAGAADRRLIVILNDNEMSIAPPVGALAAYLSTLRSSDPFARLRAIAKGVEERLPGPLRD  223 (641)
T ss_pred             EEEEEeCchhhcchHHHHHHHHHHhCCCEEEEEECCCeeecCCccHHHHHHHHHhcCcchHHHHHHHHHHHhhcchhHHH
Confidence            999999999999999999999999999999999999999988763       11111111                    


Q ss_pred             ---------------hhccccCCCcEE-EEeCCCHHHHHHHHHHHHHHHHc-cCCCEEEEEEEecCCCCCCCC
Q 013928          280 ---------------YKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARR-GEGPTLVECETYRFRGHSLAD  335 (434)
Q Consensus       280 ---------------~~~a~a~Gi~~~-~VdG~D~~av~~a~~~Al~~ar~-~~gP~lIev~t~R~~gHs~~D  335 (434)
                                     .+++++|||.++ .|||||+.++.++++.+    +. .++|++|+++|.+++|.+.++
T Consensus       224 ~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vdGhd~~~l~~al~~a----k~~~~~P~~I~~~T~kGkG~~~~e  292 (641)
T PRK12571        224 GARRARELVTGMIGGGTLFEELGFTYVGPIDGHDMEALLSVLRAA----RARADGPVLVHVVTEKGRGYAPAE  292 (641)
T ss_pred             HHHHHHHhhhhccchhhHHHHcCCEEECccCCCCHHHHHHHHHHH----HhCCCCCEEEEEEecCccCcchhh
Confidence                           378899999999 79999999998866654    33 478999999999999987553

>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type

Probab=99.85  E-value=2e-19  Score=196.90  Aligned_cols=241  Identities=18%  Similarity=0.106  Sum_probs=166.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCCh-HHHHHHHHHhcCC------CCEEEccCcchHHHH----
Q 013928           85 TKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQ-EAVSTGFIKLLKK------EDSVVSTYRDHVHAL----  153 (434)
Q Consensus        85 s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~Gq-Ea~~~g~~~~L~~------~D~v~~~yR~~~~~L----  153 (434)
                      .+.++.+.....++-..++.-...-....++.|+..++.+. +...+.....|+.      .|.|++  .||+...    
T Consensus        70 gd~~~e~~i~~~iR~~ai~MV~~A~~~~~~vgGHigsslS~adIl~vLy~~~lr~~~~~~~rD~VlS--KGHasp~lYA~  147 (885)
T TIGR00759        70 GDLELERRIRSIIRWNAIAMVLRANKKDLGLGGHISTYASAATLYEVGFNHFFRGHSEGGGGDLVFF--QGHAAPGIYAR  147 (885)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcCCcHHHHHHHHHHHHHhcCCCCCCCCCCEEEE--CCcHHHHHHHH
Confidence            34455555555555554443221211123445554444443 2334445566764      688776  5666432    


Q ss_pred             --HcCCCHHHHHHHHhcCCCCCccCCCCCcccccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEe
Q 013928          154 --SKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFF  231 (434)
Q Consensus       154 --a~G~~~~~i~~el~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~  231 (434)
                        ..|.-.++-+..+.....  ..|-++..|....+-.+.-.+|+||.|++.|+|+|++.|+...++.....+++|+|++
T Consensus       148 L~l~G~ls~e~L~~FRq~~~--g~gL~shPhp~~~p~~ve~sTGSLG~Gls~AvG~Ala~Kyl~~rg~~~~~~~rVyvll  225 (885)
T TIGR00759       148 AFLEGRLTEEQLDNFRQEVQ--GDGLSSYPHPWLMPDFWQFPTVSMGLGPINAIYQARFMKYLENRGLKDTGDQKVWAFL  225 (885)
T ss_pred             HHHcCCCCHHHHHHhcCCCC--CCCCCCCCCcCcCCCCEEeCCCCccHHHHHHHHHHHHHHHHHhhccCCCCCceEEEEE
Confidence              267534444555554322  1222332333221223455789999999999999999998765544445778999999


Q ss_pred             CccccccchHHHHHHHHHHcCCC-eEEEEEcCCccCccccccccc-CchhhhccccCCCcEEEE----------------
Q 013928          232 GDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWAIGMSHLRATS-DPQIYKKGPAFGMPGFHV----------------  293 (434)
Q Consensus       232 GDGa~~~G~~~EaLn~A~~~~LP-vI~VV~NN~y~is~~~~~~~~-~~d~~~~a~a~Gi~~~~V----------------  293 (434)
                      |||++++|++||++.+|++++|+ +|+||++|.+.+..++..... ..++.++++++||.+++|                
T Consensus       226 GDGEldEG~swEA~~~Aa~~kLdNLi~IVD~N~~qlDG~v~~~~~i~e~le~~F~a~GW~Vi~V~wg~~wd~lf~~d~~g  305 (885)
T TIGR00759       226 GDGEMDEPESKGAITFAAREKLDNLTFVINCNLQRLDGPVRGNGKIIQELESLFRGAGWNVIKVLWGSEWDALLARDTSG  305 (885)
T ss_pred             cchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCccCCccccccccchhHHHHHHhcCCEEEEEecCccchHhhcCCCcc
Confidence            99999999999999999999998 999999999899888765433 468999999999999999                


Q ss_pred             -----------------------------------------------------eCCCHHHHHHHHHHHHHHHHccCCCEE
Q 013928          294 -----------------------------------------------------DGMDVLKVREVAKEAIERARRGEGPTL  320 (434)
Q Consensus       294 -----------------------------------------------------dG~D~~av~~a~~~Al~~ar~~~gP~l  320 (434)
                                                                           +|||+.+|++|+..|.+   ..++|++
T Consensus       306 ~L~~~m~~~~dg~yq~~~~~~Ga~~R~~ffg~~~~l~~lv~~~sD~~i~~l~rgGHD~~~I~~A~~~A~~---~~grPTv  382 (885)
T TIGR00759       306 VLVKLMNETVDGDYQTYKAKDGAYVREHFFNRTPELKALVADMSDADIWALNRGGHDPRKVYAAYAAAQE---HKGQPTV  382 (885)
T ss_pred             HHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHHHHhhccchhhhhhccCCCCCHHHHHHHHHHHHh---CCCCCEE
Confidence                                                                 59999999998876653   2358999


Q ss_pred             EEEEEecCCCCC
Q 013928          321 VECETYRFRGHS  332 (434)
Q Consensus       321 Iev~t~R~~gHs  332 (434)
                      |.++|.+++|.+
T Consensus       383 IlA~TvKG~G~~  394 (885)
T TIGR00759       383 ILAKTIKGYGMG  394 (885)
T ss_pred             EEEeeeecCCCC
Confidence            999999999987

WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.

>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase

Probab=99.84  E-value=9e-20  Score=198.45  Aligned_cols=236  Identities=16%  Similarity=0.184  Sum_probs=164.3

Q ss_pred             HHHhhcCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcC-CCCEEEc--cCc
Q 013928           71 VKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLK-KEDSVVS--TYR  147 (434)
Q Consensus        71 ~~~~~~~~~~~~~~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~-~~D~v~~--~yR  147 (434)
                      ++++|+.+.....++.+++.++-.. +|-+.++.  ..  ..   .|++.++.|---+.+++...|+ +.|.++.  .|.
T Consensus        33 ~l~~i~~p~dlk~l~~~~l~~la~~-iR~~ii~~--~~--~~---~GH~g~~Ls~vel~~aL~~~~~~p~Dr~i~s~GH~  104 (677)
T PLN02582         33 LLDTINYPIHMKNLSVKELKQLADE-LRSDVIFN--VS--KT---GGHLGSSLGVVELTVALHYVFNAPQDKILWDVGHQ  104 (677)
T ss_pred             hhhhCCCHHHHhhCCHHHHHHHHHH-HHHHHHHH--HH--hc---CCCcCccccHHHHHHHHHHhhCCCCCeEEEECcch
Confidence            5899999888888999998766544 23233332  21  22   2666667887666667766676 6888766  577


Q ss_pred             chHHHHHcCCCHHHHHHHHhcCCCCCccCCCCCcccccC-CCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCce
Q 013928          148 DHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSK-EHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHV  226 (434)
Q Consensus       148 ~~~~~La~G~~~~~i~~el~g~~~g~~~G~ggs~h~~~~-~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~  226 (434)
                      ..++.+..|.. ++ |..+....     |  -+.|.... ..+..-+.|++|.++++|+|+|+|.+++       +.+.+
T Consensus       105 ay~~~~l~gr~-~~-l~~~r~~g-----~--l~g~p~~~e~~~~~~~~G~~g~~ls~a~G~A~a~~~~-------~~~~~  168 (677)
T PLN02582        105 SYPHKILTGRR-DK-MHTMRQTN-----G--LSGFTKRAESEYDCFGTGHSSTTISAGLGMAVGRDLK-------GKKNN  168 (677)
T ss_pred             HHHHHHHHccH-HH-hcccccCC-----C--cCCCCCCCCCCCceeccchhhhhHHHHHHHHHHHHhc-------CCCCE
Confidence            77777777751 11 22222110     1  11222111 1233456899999999999999998877       56789


Q ss_pred             EEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccc----------ccc-------ccC-------------
Q 013928          227 TLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH----------LRA-------TSD-------------  276 (434)
Q Consensus       227 vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~----------~~~-------~~~-------------  276 (434)
                      |||++|||++++|.+||+||.|+.+++|+|+||+||+. +|.|.          ...       ..+             
T Consensus       169 v~~viGDG~~~~G~~~Ealn~a~~~~~~li~iv~~N~~-~s~~~~~~~s~~~~vg~~~~~l~~l~~~~~~~~~~~~~~~~  247 (677)
T PLN02582        169 VVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQ-VSLPTATLDGPAPPVGALSSALSRLQSSRPLRELREVAKGV  247 (677)
T ss_pred             EEEEecccccchhhHHHHHHHHHhhCcCEEEEEECCCC-ccccccccCCCCCCccHHHHHHHHHhcchhHHHHHHHHHHH
Confidence            99999999999999999999999999999999999984 22211          000       000             


Q ss_pred             --------chhh----------------hccccCCCcEE-EEeCCCHHHHHHHHHHHHHHHHcc--CCCEEEEEEEecCC
Q 013928          277 --------PQIY----------------KKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRG--EGPTLVECETYRFR  329 (434)
Q Consensus       277 --------~d~~----------------~~a~a~Gi~~~-~VdG~D~~av~~a~~~Al~~ar~~--~gP~lIev~t~R~~  329 (434)
                              ..+.                .++++|||.++ .|||||+.++.++++.+    +..  ++|++|+++|.++.
T Consensus       248 ~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~fe~~G~~y~g~iDGHd~~~L~~al~~~----k~~~~~~P~vihv~T~KGk  323 (677)
T PLN02582        248 TKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNIDDLVTILREV----KSTKTTGPVLIHVVTEKGR  323 (677)
T ss_pred             HHhCcHhHHHHHHHHHHHhhhccCccccchHHHcCCeEEeeeCCCCHHHHHHHHHHH----HhcCCCCCEEEEEEecCCC
Confidence                    0111                24788999977 99999999998866654    333  59999999999999


Q ss_pred             CCCCCC
Q 013928          330 GHSLAD  335 (434)
Q Consensus       330 gHs~~D  335 (434)
                      |...++
T Consensus       324 G~~~ae  329 (677)
T PLN02582        324 GYPYAE  329 (677)
T ss_pred             CCChhh
Confidence            998763

>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase

Probab=99.84  E-value=2.2e-19  Score=193.98  Aligned_cols=240  Identities=15%  Similarity=0.143  Sum_probs=166.4

Q ss_pred             HHHhhcCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcC-CCCEEEc--cCc
Q 013928           71 VKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLK-KEDSVVS--TYR  147 (434)
Q Consensus        71 ~~~~~~~~~~~~~~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~-~~D~v~~--~yR  147 (434)
                      +++.|+.+.....++.++|.++-..   +|..=   ..+....  .|++..+.|---+.+++...|+ |.|.++.  .|.
T Consensus        66 ~l~~i~~p~~~k~l~~~~L~~la~e---iR~~i---i~~~~~~--~GHlgssLs~vEl~~aL~~vf~~p~DriI~s~GHq  137 (641)
T PLN02234         66 LLDTINHPMHMKNLSIKELKVLSDE---LRSDV---IFNVSKT--GGHLGSNLGVVELTVALHYIFNTPHDKILWDVGHQ  137 (641)
T ss_pred             hhhhcCCHHHHhhCCHHHHHHHHHH---HHHHH---HHHHhhc--CCCccccchHHHHHHHHHHhcCCCCCeEEEecchh
Confidence            6888887776667788888766544   44321   1211111  3677678888777777877776 6787766  577


Q ss_pred             chHHHHHcCCCHHHHHHHHhcCCCCCccCCCCCcccccC-CCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCce
Q 013928          148 DHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSK-EHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHV  226 (434)
Q Consensus       148 ~~~~~La~G~~~~~i~~el~g~~~g~~~G~ggs~h~~~~-~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~  226 (434)
                      ..++.+..|..-  -|..+...     .|.  +.|.-.. ..+..-+.|++|.++++|+|+|+|.+++       +.+..
T Consensus       138 aya~~~ltgr~~--~l~t~r~~-----ggl--~G~p~~~es~~d~~~tGslg~glS~a~GmA~a~~l~-------g~~~~  201 (641)
T PLN02234        138 SYPHKILTGRRG--KMKTIRQT-----NGL--SGYTKRRESEHDSFGTGHSSTTLSAGLGMAVGRDLK-------GMNNS  201 (641)
T ss_pred             HHHHHHHHhhhh--hhcccccC-----CCc--CCCCCCCCCCCcEECCCchHHHHHHHHHHHHHHHhC-------CCCCe
Confidence            777776665421  12221111     011  1222111 1244556899999999999999998877       56788


Q ss_pred             EEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCcc------CcccccccccC---------------chhhhcccc
Q 013928          227 TLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA------IGMSHLRATSD---------------PQIYKKGPA  285 (434)
Q Consensus       227 vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~------is~~~~~~~~~---------------~d~~~~a~a  285 (434)
                      |||++|||++++|++||+|+.|+..+-++|+|+++|+..      ...+.......               .+..+++++
T Consensus       202 v~~viGDGel~eG~~wEAl~~a~~~~~nlivIlddN~~~~~~~~q~~g~~~~v~~l~~~l~~l~~~~~~~~~~~~~~fe~  281 (641)
T PLN02234        202 VVSVIGDGAMTAGQAYEAMNNAGYLHSNMIVILNDNKQVSLPTANLDGPTQPVGALSCALSRLQSNCGMIRETSSTLFEE  281 (641)
T ss_pred             EEEEEccchhhhHHHHHHHHHHhhhCCCEEEEEECCCCCcccccccCCCCCCcccHHHHHHHhhcccccccCCHHHHHHH
Confidence            999999999999999999999997787799999999863      22221110000               245688999


Q ss_pred             CCCcEE-EEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCCCC
Q 013928          286 FGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADP  336 (434)
Q Consensus       286 ~Gi~~~-~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~~D~  336 (434)
                      |||.++ .|||||+.++.++++.+.  .....+|++|+++|.+++|.+.++.
T Consensus       282 fG~~~~g~vDGHd~~~l~~al~~~k--~~~~~~P~vI~~~T~KGkGv~~~E~  331 (641)
T PLN02234        282 LGFHYVGPVDGHNIDDLVSILETLK--STKTIGPVLIHVVTEKGRGYPYAER  331 (641)
T ss_pred             cCCEEEeeECCCCHHHHHHHHHHHH--hcCCCCCEEEEEEEecCCCcchhhc
Confidence            999999 999999999999776542  1123589999999999999997754

>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional

Probab=99.83  E-value=1.8e-19  Score=178.69  Aligned_cols=233  Identities=17%  Similarity=0.146  Sum_probs=171.0

Q ss_pred             cCcchHHHHHcCCCHH-HHHHHHhcCCC------CCccCCCCCcccccCCCcccCCcccccccchhhHHHHHHHHHHHhh
Q 013928          145 TYRDHVHALSKGVPAR-AVMSELFGKAT------GCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREV  217 (434)
Q Consensus       145 ~yR~~~~~La~G~~~~-~i~~el~g~~~------g~~~G~ggs~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~  217 (434)
                      -||||+.....|.++. +++.+.+++.+      ||..+.++.+|+...  ++.....++|.++++|.|+++|.+.++  
T Consensus        14 ~~~gh~~C~GCG~~~~~~~l~~~lg~~~v~~~~iGC~~~~~g~~p~~~~--~~~~i~~~~G~~~~~A~G~a~A~~~~~--   89 (300)
T PRK11864         14 FYPGNAACPGCGAPLGLRYLLKALGEKTVLVIPASCSTVIQGDTPKSPL--TVPVLHTAFAATAAVASGIEEALKARG--   89 (300)
T ss_pred             ecCCCccCCCCCCHHHHHHHHHHhCCCeEEEeCCCccceecCCCCcccc--cccceeehhhChHHHHHHHHHHHHhhC--
Confidence            4899999999999888 88999988766      666666677766544  666778899999999999999987763  


Q ss_pred             hhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCccccccc-----------------ccCchhh
Q 013928          218 LKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA-----------------TSDPQIY  280 (434)
Q Consensus       218 ~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~-----------------~~~~d~~  280 (434)
                          .++..|++++|||++..+.+ |+|+.|..+++|++|||.||+|...|-.+..                 ....|+.
T Consensus        90 ----~~~~~Vva~~GDG~~~~~g~-~~l~~A~~~~~~v~~vv~dN~~~~~TGgQ~S~~Tp~ga~t~tsp~G~~~~kkdi~  164 (300)
T PRK11864         90 ----EKGVIVVGWAGDGGTADIGF-QALSGAAERNHDILYIMYDNEAYMNTGIQRSSSTPYGAWTTTTPGGKREHKKPVP  164 (300)
T ss_pred             ----CCCcEEEEEEccCccccccH-HHHHHHHHhCcCEEEEEECCeeeecCCCCCCCCCcCCCccccCCCCCcCCCCCHH
Confidence                23455667999999987665 9999999999999999999998776543211                 1235788


Q ss_pred             hccccCCCcEE-EEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCCCC---------------CCCC----
Q 013928          281 KKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADP---------------DELR----  340 (434)
Q Consensus       281 ~~a~a~Gi~~~-~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~~D~---------------~~yR----  340 (434)
                      .++.++|++++ +++-.|+.++.+++++|+    +.+||.+|++.+.-..++...+.               +-||    
T Consensus       165 ~i~~a~g~~yVA~~~~~~~~~~~~~i~~A~----~~~Gps~I~~~spC~~~~~~~~~~~~~~~k~Av~tg~wplye~~~g  240 (300)
T PRK11864        165 DIMAAHKVPYVATASIAYPEDFIRKLKKAK----EIRGFKFIHLLAPCPPGWRFDPDKTIEIARLAVETGVWPLFEYENG  240 (300)
T ss_pred             HHHHHcCCCEEEEEeCCCHHHHHHHHHHHH----hCCCCEEEEEeCCCCCCCCcChHHHHHHHHHHHHcCCceEEEEECC
Confidence            89999999877 888889999988877776    46899999997654444321110               0121    


Q ss_pred             -------CHHHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 013928          341 -------DPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFAD  391 (434)
Q Consensus       341 -------~~~e~~~~~~~DPl~~~~~~L~~~G~~te~e~~~i~~e~~~~v~~a~~~A~  391 (434)
                             ++.. ...+.+.|+..|-+..-++..+.+++++++++++++.++.-.+.++
T Consensus       241 ~~~~~~~~~~~-~~~~~~~pv~~~l~~q~Rf~~L~~~~~~~~q~~vd~~~~~~~~~~~  297 (300)
T PRK11864        241 KFKLNSPSKTL-LDKKKRKPVEEYLKLQGRFKHLTEEEIKGLQEEIDEMWEEIKKLAK  297 (300)
T ss_pred             EEEEccCCccc-cccccCCCHHHHHhhccchhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   1100 0112234666666666666778899999999999999887655543

>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc)

Probab=99.82  E-value=3.6e-20  Score=173.97  Aligned_cols=123  Identities=24%  Similarity=0.226  Sum_probs=98.5

Q ss_pred             cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCccc
Q 013928          191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMS  269 (434)
Q Consensus       191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~  269 (434)
                      .+++++||+++|+|+|+++|           .++++|||++|||+|+++  .++|.+|+++++|+++||.||+ |++...
T Consensus        49 ~~~~g~mG~~lpaaiGa~la-----------~p~r~vv~i~GDG~f~m~--~~eL~Ta~~~~lpvi~vV~NN~~yg~~~~  115 (196)
T cd02013          49 PLSFGNCGYALPAIIGAKAA-----------APDRPVVAIAGDGAWGMS--MMEIMTAVRHKLPVTAVVFRNRQWGAEKK  115 (196)
T ss_pred             CCCCcccccHHHHHHHHHHh-----------CCCCcEEEEEcchHHhcc--HHHHHHHHHhCCCeEEEEEECchhHHHHH
Confidence            45679999999999999999           688999999999999997  7899999999999888886664 554221


Q ss_pred             ccc----------cccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCC
Q 013928          270 HLR----------ATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR  329 (434)
Q Consensus       270 ~~~----------~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~  329 (434)
                      .+.          ....+|+.+++++||+++++|+.  +.++..++++|++.++ .++|+|||+.+.+..
T Consensus       116 ~q~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~--~~el~~al~~a~~~~~-~~~p~liev~v~~~~  182 (196)
T cd02013         116 NQVDFYNNRFVGTELESESFAKIAEACGAKGITVDK--PEDVGPALQKAIAMMA-EGKTTVIEIVCDQEL  182 (196)
T ss_pred             HHHHHcCCCcccccCCCCCHHHHHHHCCCEEEEECC--HHHHHHHHHHHHhcCC-CCCeEEEEEEeCccc
Confidence            110          11357999999999999999985  6688888887775433 478999999986544

Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.

>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl)

Probab=99.82  E-value=6.9e-20  Score=172.67  Aligned_cols=123  Identities=22%  Similarity=0.229  Sum_probs=99.1

Q ss_pred             cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccc
Q 013928          191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH  270 (434)
Q Consensus       191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~  270 (434)
                      .+++|+||+++|.|+|+++|           .|+++|||++|||+|++.  .++|.+|.++++|+++||.||+ +++...
T Consensus        53 ~~~~GsmG~~lpaaiGa~la-----------~p~~~vv~i~GDG~f~m~--~~eL~Ta~~~~lpviivV~NN~-~yg~~~  118 (202)
T cd02006          53 CGQAGPLGWTVPAALGVAAA-----------DPDRQVVALSGDYDFQFM--IEELAVGAQHRIPYIHVLVNNA-YLGLIR  118 (202)
T ss_pred             cCCccchhhhhHHHHhHHhh-----------CCCCeEEEEEeChHhhcc--HHHHHHHHHhCCCeEEEEEeCc-hHHHHH
Confidence            45679999999999999999           788999999999999997  7999999999999888888886 333322


Q ss_pred             ccc----------------------ccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecC
Q 013928          271 LRA----------------------TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF  328 (434)
Q Consensus       271 ~~~----------------------~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~  328 (434)
                      ..+                      ...+|+.++|++||+++.+|+.  +.++..++++|++..+..++|+|||+.+.+.
T Consensus       119 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~--~~el~~al~~a~~~~~~~~~p~liev~i~~~  196 (202)
T cd02006         119 QAQRAFDMDYQVNLAFENINSSELGGYGVDHVKVAEGLGCKAIRVTK--PEELAAAFEQAKKLMAEHRVPVVVEAILERV  196 (202)
T ss_pred             HHHHHhcCccccccccccccccccCCCCCCHHHHHHHCCCEEEEECC--HHHHHHHHHHHHHhcccCCCcEEEEEEeccc
Confidence            111                      0147999999999999999984  5688888887775443457999999998554


Q ss_pred             C
Q 013928          329 R  329 (434)
Q Consensus       329 ~  329 (434)
                      .
T Consensus       197 ~  197 (202)
T cd02006         197 T  197 (202)
T ss_pred             c
Confidence            3

E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.

>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional

Probab=99.81  E-value=1.8e-18  Score=191.85  Aligned_cols=240  Identities=18%  Similarity=0.141  Sum_probs=165.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCCh-HHHHHHHHHhcC------CCCEEEccCcchHHHH----
Q 013928           85 TKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQ-EAVSTGFIKLLK------KEDSVVSTYRDHVHAL----  153 (434)
Q Consensus        85 s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~Gq-Ea~~~g~~~~L~------~~D~v~~~yR~~~~~L----  153 (434)
                      .+.++.+-....++-..++.-...-...+++.|+..++.+- +-..++....|+      .+|.|+.  .||+...    
T Consensus        84 gd~~~e~~i~~~iR~~a~~mv~~A~~~~~~~GGH~~s~~S~a~i~~vl~~~~~r~~~~~~~~D~V~s--kGHasp~lYA~  161 (896)
T PRK13012         84 GDLALEERLAAIIRWNALAMVVRANRAYGELGGHIASYASAADLFEVGFNHFFRGRDDAGGGDLVYF--QPHSAPGIYAR  161 (896)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcccHHHHHHHHHHHHhhcCCCCCCCCCCEEEE--CcchHHHHHHH
Confidence            34455555555555555543322222234555654444433 233445556676      4787776  4676532    


Q ss_pred             --HcCC-CHHHHHHHHhcCCCCCccCCCCCcccccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEE
Q 013928          154 --SKGV-PARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAF  230 (434)
Q Consensus       154 --a~G~-~~~~i~~el~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~  230 (434)
                        ..|. +.++ +..+.....  ..|-.+..|....+-.+.-.+|+||.|++.|+|+|++.||...+......+++|+|+
T Consensus       162 ~~l~G~l~~e~-L~~fR~~~~--~~gl~~~P~p~~~p~~~e~~TGSlG~G~~~ai~~A~~~ryl~~~g~~~~~~~~v~~~  238 (896)
T PRK13012        162 AFLEGRLSEEQ-LDHFRQEIG--GPGLSSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQHRGLKDTSGRKVWGF  238 (896)
T ss_pred             HHHcCCCCHHH-HHHhcCCCC--CCCCCCCCCcCCCCCCEecCCCCchHHHHHHHHHHHhcccccccccccCCCCeEEEE
Confidence              2564 5544 445553322  122233223222111234468999999999999999998764322222567899999


Q ss_pred             eCccccccchHHHHHHHHHHcCCC-eEEEEEcCCccCccccccccc-CchhhhccccCCCcEEEE---------------
Q 013928          231 FGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWAIGMSHLRATS-DPQIYKKGPAFGMPGFHV---------------  293 (434)
Q Consensus       231 ~GDGa~~~G~~~EaLn~A~~~~LP-vI~VV~NN~y~is~~~~~~~~-~~d~~~~a~a~Gi~~~~V---------------  293 (434)
                      +|||++++|++||++.+|++++|+ +|+||++|...+..+...... ..++.++++++||.+++|               
T Consensus       239 lGDGEl~Eg~~~eA~~~A~~~~LdNLi~ivD~N~~~lDG~v~~~~~~~~~l~~~f~a~GW~Vi~v~wg~~wd~l~~~d~~  318 (896)
T PRK13012        239 FGDGEMDEPESIAALSLAAREGLDNLVFVINCNLQRLDGPVRGNGRIIQELEALFRGAGWNVIKVLWGSDWDALFARDTT  318 (896)
T ss_pred             EchhhhccHHHHHHHHHHHHhCCCcEEEEEECCCccccCccccccccchHHHHHHHhCCCEEEEEecccchHHHhcCCCc
Confidence            999999999999999999999998 999999999899888765433 368999999999999999               


Q ss_pred             -----------e-------------------------------------------CCCHHHHHHHHHHHHHHHHccCCCE
Q 013928          294 -----------D-------------------------------------------GMDVLKVREVAKEAIERARRGEGPT  319 (434)
Q Consensus       294 -----------d-------------------------------------------G~D~~av~~a~~~Al~~ar~~~gP~  319 (434)
                                 |                                           |||+.+|++|+..|.+   ..++|+
T Consensus       319 ~~l~~~~~~~~Dg~yq~~~~~~g~~~r~~ff~~~~~~~~lv~~~~d~~i~~l~rgGHD~~~i~~A~~~a~~---~~~~Pt  395 (896)
T PRK13012        319 GALVRRFAETVDGQFQTFKANDGAYNREHFFGQDPELAALVAHLSDEDIDRLKRGGHDPRKVYAAYAAAVR---HKGQPT  395 (896)
T ss_pred             cHHHHHHHhCCcHHHHHHhhcchHHHHHHhccccHHHHHHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHh---CCCCCE
Confidence                       8                                           9999999998876653   235899


Q ss_pred             EEEEEEecCCCCC
Q 013928          320 LVECETYRFRGHS  332 (434)
Q Consensus       320 lIev~t~R~~gHs  332 (434)
                      +|.++|.+++|.+
T Consensus       396 vIla~TvkG~G~~  408 (896)
T PRK13012        396 VILAKTKKGYGMG  408 (896)
T ss_pred             EEEEEeeecCCCC
Confidence            9999999999976

>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL)

Probab=99.80  E-value=2.3e-19  Score=164.66  Aligned_cols=116  Identities=28%  Similarity=0.340  Sum_probs=94.0

Q ss_pred             cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcC-CccCccc
Q 013928          191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN-LWAIGMS  269 (434)
Q Consensus       191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN-~y~is~~  269 (434)
                      .+..|+||+++|+|+|+++|           .++++|||++|||+++++  .++|++|++++||+++||.|| +|++...
T Consensus        44 ~~~~g~mG~~lp~AiGa~la-----------~~~~~vv~i~GDG~f~~~--~~el~ta~~~~lpv~ivv~NN~~~~~~~~  110 (172)
T cd02004          44 AGTFGTLGVGLGYAIAAALA-----------RPDKRVVLVEGDGAFGFS--GMELETAVRYNLPIVVVVGNNGGWYQGLD  110 (172)
T ss_pred             CCCCCcccchHHHHHHHHHh-----------CCCCeEEEEEcchhhcCC--HHHHHHHHHcCCCEEEEEEECcccccchh
Confidence            45679999999999999999           678999999999999987  799999999999977777766 5766543


Q ss_pred             ccc-----------cccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEE
Q 013928          270 HLR-----------ATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECET  325 (434)
Q Consensus       270 ~~~-----------~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t  325 (434)
                      .+.           ....+|+.+++++||+++.+|++  +.++.++++++    +..++|+|||+.+
T Consensus       111 ~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~~--~~el~~al~~a----~~~~~p~liev~i  171 (172)
T cd02004         111 GQQLSYGLGLPVTTLLPDTRYDLVAEAFGGKGELVTT--PEELKPALKRA----LASGKPALINVII  171 (172)
T ss_pred             hhhhhccCCCceeccCCCCCHHHHHHHCCCeEEEECC--HHHHHHHHHHH----HHcCCCEEEEEEc
Confidence            221           11357899999999999999984  66776665554    4568999999976

Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.

>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed

Probab=99.80  E-value=7.1e-18  Score=186.57  Aligned_cols=240  Identities=19%  Similarity=0.150  Sum_probs=164.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCCh-HHHHHHHHHhcCC------CCEEEccCcchHHHH---
Q 013928           84 ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQ-EAVSTGFIKLLKK------EDSVVSTYRDHVHAL---  153 (434)
Q Consensus        84 ~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~Gq-Ea~~~g~~~~L~~------~D~v~~~yR~~~~~L---  153 (434)
                      ....++.+.....++...++.-........+..|+..++.+- +-..++....|+.      +|+|+.  .+|+..+   
T Consensus        75 pg~~~~e~~i~~~iR~~a~~mv~~An~~~~~~GGH~~s~~S~a~i~~vl~~~~~r~~~~~~~~D~V~s--kGHasp~lYA  152 (891)
T PRK09405         75 PGDLELERRIRSYIRWNAAAMVLRANKKDLGLGGHISSFASSATLYEVGFNHFFRAPNEPHGGDLVFF--QGHASPGIYA  152 (891)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcccChHHHHHHHHHHHHhhCCCCCCCCCCCEEEE--CchHHHHHHH
Confidence            345567777777777666664322222222344554333332 2334555666764      687774  4776542   


Q ss_pred             ---HcCC-CHHHHHHHHhcCCCCCccCCCCCcccccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEE
Q 013928          154 ---SKGV-PARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLA  229 (434)
Q Consensus       154 ---a~G~-~~~~i~~el~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~  229 (434)
                         ..|. +.++ +..+....++  .|-++..|....+-.+.-.+++||.|++.|+|+|++.||...+......+++|||
T Consensus       153 ~~~l~G~l~~e~-L~~fR~~~~g--~gl~syPhp~~~p~~~~~~tgS~G~G~~~a~~~A~~~kyl~~~~~~~~~~~rv~~  229 (891)
T PRK09405        153 RAFLEGRLTEEQ-LDNFRQEVDG--KGLSSYPHPWLMPDFWQFPTVSMGLGPIMAIYQARFLKYLENRGLKDTSDQKVWA  229 (891)
T ss_pred             HHHHcCCCCHHH-HHHhcCCCCC--CCCCCCCCcCCCCCCeecCccccchhHHHHHHHHHhCccccccccccCCCceEEE
Confidence               2564 5444 4445543221  1222222332211112335789999999999999998865332222256789999


Q ss_pred             EeCccccccchHHHHHHHHHHcCCC-eEEEEEcCCccCccccccccc-CchhhhccccCCCcEEEE--------------
Q 013928          230 FFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWAIGMSHLRATS-DPQIYKKGPAFGMPGFHV--------------  293 (434)
Q Consensus       230 ~~GDGa~~~G~~~EaLn~A~~~~LP-vI~VV~NN~y~is~~~~~~~~-~~d~~~~a~a~Gi~~~~V--------------  293 (434)
                      ++|||++++|.+||++.+|++++|+ +|+||++|...+..++..... ..++.++++++||.++.|              
T Consensus       230 ~~GDGEldEg~~~EA~~~A~~~~LdNLi~ivD~N~q~lDG~v~~~~~~~~~l~~~f~a~GW~Vi~v~wG~~wd~l~~~d~  309 (891)
T PRK09405        230 FLGDGEMDEPESLGAISLAAREKLDNLIFVINCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGSRWDPLLAKDT  309 (891)
T ss_pred             EEcchhhccHHHHHHHHHHHHhCCCCEEEEEECCCcccCCccccccccchhHHHHHhhCCCEEEEEeccccchhhhccCC
Confidence            9999999999999999999999998 999999999899888765322 468999999999999999              


Q ss_pred             ------------e-------------------------------------------CCCHHHHHHHHHHHHHHHHccCCC
Q 013928          294 ------------D-------------------------------------------GMDVLKVREVAKEAIERARRGEGP  318 (434)
Q Consensus       294 ------------d-------------------------------------------G~D~~av~~a~~~Al~~ar~~~gP  318 (434)
                                  |                                           |||+.+|++|+..|.+   ..++|
T Consensus       310 ~g~L~~~~~~~~Dg~yq~~~~~~ga~~R~~ffg~~~~~~~lv~~~sD~~i~~l~~gGHD~~~i~~A~~~A~~---~~~~P  386 (891)
T PRK09405        310 SGKLVQLMNETVDGDYQTYKAKDGAYVREHFFGKYPETKALVADMSDDDIWALNRGGHDPRKVYAAYKAAVE---HKGQP  386 (891)
T ss_pred             ccHHHHHHHhCCcHHHHHHHhcccHHHHHHhcCCCHHHHHHHhhCCHHHHHHhccCCCCHHHHHHHHHHHHh---CCCCC
Confidence                        4                                           9999999998877653   23689


Q ss_pred             EEEEEEEecCCCC
Q 013928          319 TLVECETYRFRGH  331 (434)
Q Consensus       319 ~lIev~t~R~~gH  331 (434)
                      ++|.++|.+++|.
T Consensus       387 tvIia~TvkG~G~  399 (891)
T PRK09405        387 TVILAKTIKGYGM  399 (891)
T ss_pred             EEEEEeceecCCC
Confidence            9999999999998

>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS

Probab=99.79  E-value=3.7e-19  Score=165.45  Aligned_cols=118  Identities=27%  Similarity=0.450  Sum_probs=93.1

Q ss_pred             cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCccc
Q 013928          191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMS  269 (434)
Q Consensus       191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~  269 (434)
                      .+++|+||+++|.|+|+++|           .++++|||++|||+|+++  .++|.+|+++++|+++||.||+ |++...
T Consensus        46 ~~~~g~mG~~lp~aiGa~la-----------~~~~~vv~i~GDG~f~~~--~~eL~ta~~~~lpi~ivV~nN~~~~~~~~  112 (186)
T cd02015          46 SGGLGTMGFGLPAAIGAKVA-----------RPDKTVICIDGDGSFQMN--IQELATAAQYNLPVKIVILNNGSLGMVRQ  112 (186)
T ss_pred             CCCccchhchHHHHHHHHHh-----------CCCCeEEEEEcccHHhcc--HHHHHHHHHhCCCeEEEEEECCccHHHHH
Confidence            34679999999999999999           678899999999999986  7889999999999888888776 332110


Q ss_pred             c--------c---ccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928          270 H--------L---RATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR  327 (434)
Q Consensus       270 ~--------~---~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R  327 (434)
                      .        .   .....+|+.+++++||+++++|++.  .++.+    ++++++..++|+|||+.+.+
T Consensus       113 ~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~--~el~~----al~~a~~~~~p~liev~~~~  175 (186)
T cd02015         113 WQELFYEGRYSHTTLDSNPDFVKLAEAYGIKGLRVEKP--EELEA----ALKEALASDGPVLLDVLVDP  175 (186)
T ss_pred             HHHHHcCCceeeccCCCCCCHHHHHHHCCCceEEeCCH--HHHHH----HHHHHHhCCCCEEEEEEeCC
Confidence            0        0   1113578999999999999999863  45555    45555567899999999864

AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.

>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC)

Probab=99.77  E-value=1.8e-18  Score=159.20  Aligned_cols=115  Identities=30%  Similarity=0.441  Sum_probs=93.3

Q ss_pred             cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCccc
Q 013928          191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMS  269 (434)
Q Consensus       191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~  269 (434)
                      .++ |+||+++|+|+|+++|           .++++|||++|||+|+++  .++|.+|.++++|+++||.||+ |++...
T Consensus        46 ~~~-g~mG~~lp~aiGaala-----------~~~~~vv~i~GDG~f~~~--~~el~ta~~~~~p~~~iV~nN~~~~~~~~  111 (178)
T cd02002          46 LRG-GGLGWGLPAAVGAALA-----------NPDRKVVAIIGDGSFMYT--IQALWTAARYGLPVTVVILNNRGYGALRS  111 (178)
T ss_pred             cCC-ccccchHHHHHHHHhc-----------CCCCeEEEEEcCchhhcc--HHHHHHHHHhCCCeEEEEEcCccHHHHHH
Confidence            345 9999999999999999           578899999999999998  5899999999999999988885 766432


Q ss_pred             ccc-----------------cccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEE
Q 013928          270 HLR-----------------ATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECET  325 (434)
Q Consensus       270 ~~~-----------------~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t  325 (434)
                      .+.                 ....+|+.+++++||+++++|++  +.++.+++++|+    +.++|+|||+.+
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~--~~el~~al~~a~----~~~~p~vi~v~v  178 (178)
T cd02002         112 FLKRVGPEGPGENAPDGLDLLDPGIDFAAIAKAFGVEAERVET--PEELDEALREAL----AEGGPALIEVVV  178 (178)
T ss_pred             HHHHHcCCCcccccccccccCCCCCCHHHHHHHcCCceEEeCC--HHHHHHHHHHHH----hCCCCEEEEEEC
Confidence            110                 11347899999999999999987  667777666654    468999999964

P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.

>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor

Probab=99.77  E-value=1.2e-18  Score=157.93  Aligned_cols=118  Identities=29%  Similarity=0.375  Sum_probs=94.8

Q ss_pred             cccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcc
Q 013928          189 NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGM  268 (434)
Q Consensus       189 ~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~  268 (434)
                      ......++||+++|.|+|++++           .++++|+|++|||+++++  +++|++|..+++|+++||.||++...+
T Consensus        40 ~~~~~~g~~G~~~~~a~Gaa~a-----------~~~~~vv~~~GDG~~~~~--~~~l~ta~~~~~~~~~iv~nN~~~~~~  106 (168)
T cd00568          40 LTSTGFGAMGYGLPAAIGAALA-----------APDRPVVCIAGDGGFMMT--GQELATAVRYGLPVIVVVFNNGGYGTI  106 (168)
T ss_pred             EeCCCchhhhhhHHHHHHHHHh-----------CCCCcEEEEEcCcHHhcc--HHHHHHHHHcCCCcEEEEEECCccHHH
Confidence            3456789999999999999999           568899999999999985  899999999999999999888743333


Q ss_pred             ccc-----------ccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEE
Q 013928          269 SHL-----------RATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECET  325 (434)
Q Consensus       269 ~~~-----------~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t  325 (434)
                      ...           .....+|+.+++++||+++++|++  +.++.+    +++++++.++|+|||++|
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~d~~~~a~~~G~~~~~v~~--~~~l~~----a~~~a~~~~~p~~i~v~~  168 (168)
T cd00568         107 RMHQEAFYGGRVSGTDLSNPDFAALAEAYGAKGVRVED--PEDLEA----ALAEALAAGGPALIEVKT  168 (168)
T ss_pred             HHHHHHHcCCCcccccCCCCCHHHHHHHCCCeEEEECC--HHHHHH----HHHHHHhCCCCEEEEEEC
Confidence            221           222456899999999999999986  456555    444555678999999975

These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.

>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]

Probab=99.77  E-value=9.7e-18  Score=176.16  Aligned_cols=235  Identities=20%  Similarity=0.208  Sum_probs=174.0

Q ss_pred             HHHhhcCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcC-CCCEEEc--cCc
Q 013928           71 VKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLK-KEDSVVS--TYR  147 (434)
Q Consensus        71 ~~~~~~~~~~~~~~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~-~~D~v~~--~yR  147 (434)
                      ++++|+.+..-..+|.++|.++-..   +|.+   +.+...+  -.|++.++.|---+.+++..+++ |.|.++.  .|.
T Consensus         4 ~L~~i~~P~dLk~ls~~eL~~La~E---iR~~---li~~vS~--~GGHlgsnLGvVELTiALH~VF~sP~D~~IwDVgHQ   75 (627)
T COG1154           4 LLDKINSPADLKKLSIEELPQLADE---IREF---LLEVVSA--TGGHLGSNLGVVELTIALHYVFDSPKDKLIWDVGHQ   75 (627)
T ss_pred             hhhhcCCHHHHhhCCHHHHHHHHHH---HHHH---HHHHhcc--CCCccCCCcChhhhhHHHHHHhCCCCCCeEEecCcc
Confidence            5778888888888999999888755   4443   2222222  24788889999889999999998 7898877  899


Q ss_pred             chHHHHHcCCCHHHHHHHHhcCCC--CCccCCCCCcccccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCc
Q 013928          148 DHVHALSKGVPARAVMSELFGKAT--GCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH  225 (434)
Q Consensus       148 ~~~~~La~G~~~~~i~~el~g~~~--g~~~G~ggs~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~  225 (434)
                      .+.|.|..|..  +-|..+..+..  |.+ -+..|-|      -.+ ..|+-+.++++|+|+|.|...+       +.++
T Consensus        76 aYpHKiLTGR~--e~f~tlRq~~GlsGf~-~r~ESe~------D~f-~~GHsSTSiSaalG~A~A~~~~-------g~~~  138 (627)
T COG1154          76 AYPHKILTGRR--EQFDTLRQKDGLSGFP-KREESEH------DWF-GVGHSSTSISAALGMAKARDLK-------GEDR  138 (627)
T ss_pred             cchhHHhcCch--hhcchhhhcCCCCCCC-CcccCCC------ccc-ccCchHHHHHHHhhHHHHHHhc-------CCCC
Confidence            99999998865  44444443321  111 0111222      111 3567788999999999997776       6788


Q ss_pred             eEEEEeCccccccchHHHHHHHHH-HcCCCeEEEEEcCCccCcccccccc-------cC---------------------
Q 013928          226 VTLAFFGDGTCNNGQFFECLNMAA-LWKLPIVFVVENNLWAIGMSHLRAT-------SD---------------------  276 (434)
Q Consensus       226 ~vv~~~GDGa~~~G~~~EaLn~A~-~~~LPvI~VV~NN~y~is~~~~~~~-------~~---------------------  276 (434)
                      .|||++||||+.-|+.+|+||.|. ..+-|+|+|+++|+.+|+.+.....       ..                     
T Consensus       139 ~vvaVIGDGAlt~GmA~EALN~ag~~~~~~~iVILNDNeMSIs~nvGal~~~L~~l~~~~~y~~~~~~~kk~l~~~~~~~  218 (627)
T COG1154         139 NVVAVIGDGALTGGMAFEALNNAGADLKSNLIVILNDNEMSISPNVGALSKHLARLRSGPFYQSLREGGKKVLSKVGPPL  218 (627)
T ss_pred             cEEEEECCccccchHHHHHHhhhhhccCCCEEEEEeCCCcccCCCccHHHHHHHHHhccchHHHHHHHHHHHHHhhchHH
Confidence            999999999999999999999998 6667899999999988876542100       00                     


Q ss_pred             -------ch-------hhhccccCCCcEE-EEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCC
Q 013928          277 -------PQ-------IYKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA  334 (434)
Q Consensus       277 -------~d-------~~~~a~a~Gi~~~-~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~~  334 (434)
                             .+       ....++.+|+.++ -|||+|++++..+++    .++..++|+||+++|-++.|...+
T Consensus       219 ~~~~~r~e~~~K~l~~~~~lFeelGf~YiGPiDGHni~~Li~~Lk----~~kd~~gPvllHv~T~KGKGY~pA  287 (627)
T COG1154         219 KRFAKRAEESIKGLLVPGTLFEELGFNYIGPIDGHNLEELIPTLK----NAKDLKGPVLLHVVTKKGKGYKPA  287 (627)
T ss_pred             HHHHHHHHHhhhcccCchhhHHHhCCeeECCcCCCCHHHHHHHHH----HHhcCCCCEEEEEEecCCCCCChh
Confidence                   00       0125778899988 899999999888555    556789999999999999998866

>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B

Probab=99.77  E-value=3.5e-18  Score=164.89  Aligned_cols=226  Identities=21%  Similarity=0.225  Sum_probs=148.0

Q ss_pred             HhhcCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcC-CCCEEEc--cCcch
Q 013928           73 EKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLK-KEDSVVS--TYRDH  149 (434)
Q Consensus        73 ~~~~~~~~~~~~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~-~~D~v~~--~yR~~  149 (434)
                      ++|+.+..-..++.++|.+|-..   +|.|   +.+.  -.+..|++.++.|---+.+|+..+++ |.|.++.  .|..+
T Consensus         2 ~~I~~p~dlk~ls~~eL~~La~e---iR~~---ii~~--vs~~GGHl~snLGvVELTiALH~vFd~p~DkivwDvGHQ~Y   73 (270)
T PF13292_consen    2 DKINSPEDLKKLSIEELEQLAQE---IREF---IIET--VSKTGGHLASNLGVVELTIALHYVFDSPKDKIVWDVGHQAY   73 (270)
T ss_dssp             GG-SSHHHHTTS-GGGHHHHHHH---HHHH---HHHH--CTCCCSTHHHHHCCHHHHHHHHHHS-TTTSEEEESSSTT-H
T ss_pred             CCCCCHHHHHcCCHHHHHHHHHH---HHHH---HHHH--HhhcCCCCCCCccHHHHHHHHHHHhCCCCCeEEEecccccc
Confidence            56777777788899999888755   5554   2222  23445788788999888999999998 7998888  89999


Q ss_pred             HHHHHcCCCHHHHHHHHhcCCCCCccCCCCCcccccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEE
Q 013928          150 VHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLA  229 (434)
Q Consensus       150 ~~~La~G~~~~~i~~el~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~  229 (434)
                      .|.|..|..  +-|..+...     .|-.|-......++-.+ +.|+-+.++++|+|+|.|..++       +.+..||+
T Consensus        74 ~HKiLTGR~--~~f~TlRq~-----gGlSGF~~r~ES~~D~f-~~GHsstsiSaa~Gma~ar~l~-------~~~~~vVa  138 (270)
T PF13292_consen   74 VHKILTGRR--DRFHTLRQY-----GGLSGFPKRSESEYDAF-GAGHSSTSISAALGMAVARDLK-------GEDRKVVA  138 (270)
T ss_dssp             HHHHCTTTC--CCGGGTTST-----TS--SS--TTT-TT--S---SSSS-HHHHHHHHHHHHHHH-------TS---EEE
T ss_pred             hhhhccCcH--HHhchhhhc-----CCcCCCCCcccCCCCcc-cCCccHhHHHHHHHHHHHHHhc-------CCCCcEEE
Confidence            999987753  112222211     12222111111112222 3578899999999999998877       56889999


Q ss_pred             EeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCccccccc-------ccC--------------------------
Q 013928          230 FFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA-------TSD--------------------------  276 (434)
Q Consensus       230 ~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~-------~~~--------------------------  276 (434)
                      ++|||++.-|+.+|+||.|...+-++|+|+++|+..|+-.....       +..                          
T Consensus       139 VIGDGalt~Gma~EALN~~g~~~~~liVILNDN~mSIs~nvGals~~L~~l~~~~~y~~~k~~~~~~l~~~~~~~~~~~r  218 (270)
T PF13292_consen  139 VIGDGALTGGMAFEALNNAGHLKSNLIVILNDNEMSISPNVGALSKYLSKLRSSPTYNKLKEDVKSLLKKIPPIEEFAKR  218 (270)
T ss_dssp             EEETTGGGSHHHHHHHHHHHHHT-SEEEEEEE-SBSSSB--SSHCCC---------------------------------
T ss_pred             EECCcchhHHHHHHHHHHHHhcCCCEEEEEeCCCcccCCCcchHHHHHHhccchhHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            99999999999999999999999999999999998887543110       000                          


Q ss_pred             -c----h-hhhccccCCCcEE-EEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEE
Q 013928          277 -P----Q-IYKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVECET  325 (434)
Q Consensus       277 -~----d-~~~~a~a~Gi~~~-~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t  325 (434)
                       .    . ...+++.+|+.++ .|||+|+.++.++++    .++..++|+||+++|
T Consensus       219 ~~~s~K~~~~~lFe~LG~~Y~GPiDGHdl~~Li~~l~----~~K~~~gPvllHV~T  270 (270)
T PF13292_consen  219 IKESLKGFSPNLFEELGFDYIGPIDGHDLEELIEVLE----NAKDIDGPVLLHVIT  270 (270)
T ss_dssp             ----------CCCHHCT-EEEEEEETT-HHHHHHHHH----HHCCSSSEEEEEEE-
T ss_pred             HhhhhhhhhHHHHHHcCCeEEeccCCCCHHHHHHHHH----HHhcCCCCEEEEEeC
Confidence             0    0 1135677899988 899999998888554    566789999999987

>PRK05261 putative phosphoketolase; Provisional

Probab=99.75  E-value=1.5e-17  Score=182.04  Aligned_cols=205  Identities=19%  Similarity=0.251  Sum_probs=156.4

Q ss_pred             eecccccCCCChHHHHHHHHHhcCCC--CEEEccCcchHHHHH------cC--------CCHHHH-HHHHhcCCCCCccC
Q 013928          114 KMFGFVHLYNGQEAVSTGFIKLLKKE--DSVVSTYRDHVHALS------KG--------VPARAV-MSELFGKATGCCRG  176 (434)
Q Consensus       114 k~~G~~h~~~GqEa~~~g~~~~L~~~--D~v~~~yR~~~~~La------~G--------~~~~~i-~~el~g~~~g~~~G  176 (434)
                      +..|++.++.|+..+.+.+..++++.  |+++-.--||+..+.      .|        ++..+. |..++.+-.-  .|
T Consensus        47 r~~GHwGt~pgln~vyahln~li~~~~~~~~~V~g~GHg~p~~~a~~~L~Gs~~~~yp~is~d~~gl~~lfrqfs~--pg  124 (785)
T PRK05261         47 RLLGHWGTTPGLNFIYAHLNRLIRKYDLNMIYITGPGHGGPAMVANAYLEGTYSEIYPEITQDEEGMARLFKQFSF--PG  124 (785)
T ss_pred             ccCCCCCCcHHHHHHHHHHHHHHhhcCCceEEEeCCCccHHHHHHHHHHcCCCcccCCCCCccHHHHHHHHHhccC--CC
Confidence            45788888999999999999999875  655555557775432      35        333221 2223322211  11


Q ss_pred             CCCCcccccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchH---HHHHHHHHHcCC
Q 013928          177 QGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQF---FECLNMAALWKL  253 (434)
Q Consensus       177 ~ggs~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~---~EaLn~A~~~~L  253 (434)
                       |.+.|......++....|+||++++.|+|+|+.           +++.+|+|++|||++++|.+   |++.+++...++
T Consensus       125 -g~~sH~~~~tPGi~~~~G~LG~gls~A~G~Al~-----------~~d~iv~~~vGDGE~EeG~lAa~W~~~~~~~~~~~  192 (785)
T PRK05261        125 -GIPSHAAPETPGSIHEGGELGYSLSHAYGAAFD-----------NPDLIVACVVGDGEAETGPLATSWHSNKFLNPATD  192 (785)
T ss_pred             -CcCCCCCCCCCCeeeCCCchhhHHHHHHHHHHc-----------CCCCEEEEEECcCchhhhhhHHHhhhhhhcccccC
Confidence             335677655668888899999999999999987           67889999999999999973   666677777777


Q ss_pred             C-eEEEEEcCCccCcccccccc-cCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHH-----------Hcc---CC
Q 013928          254 P-IVFVVENNLWAIGMSHLRAT-SDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERA-----------RRG---EG  317 (434)
Q Consensus       254 P-vI~VV~NN~y~is~~~~~~~-~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~a-----------r~~---~g  317 (434)
                      . |+.|+++|+|+|++++.... ...++.+++++|||+++.|||+|+.+++.++++|++.+           |.+   .+
T Consensus       193 g~vLPIld~Ng~~Is~pt~~~~~~~e~l~~rf~g~Gw~~i~VDG~D~~av~~a~a~al~~~i~~i~~iq~~Ar~~~~~~~  272 (785)
T PRK05261        193 GAVLPILHLNGYKIANPTILARISDEELEALFRGYGYEPYFVEGDDPADMHQEMAAALDTAIEEIRAIQKEAREGGDTTR  272 (785)
T ss_pred             CCEEEEEEecCCcCCCCccccccCcHhHHHHHHHCCCeeEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            7 78888899999999987654 44789999999999999999999999998876666544           334   58


Q ss_pred             CE--EEEEEEecCCCCC
Q 013928          318 PT--LVECETYRFRGHS  332 (434)
Q Consensus       318 P~--lIev~t~R~~gHs  332 (434)
                      |+  +|.++|.+++|-+
T Consensus       273 P~wp~Ii~rT~kG~g~p  289 (785)
T PRK05261        273 PRWPMIVLRTPKGWTGP  289 (785)
T ss_pred             CCceEEEEECCccCCCC
Confidence            99  9999999988844

>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit

Probab=99.75  E-value=1.5e-17  Score=153.87  Aligned_cols=119  Identities=26%  Similarity=0.234  Sum_probs=92.3

Q ss_pred             cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCccc
Q 013928          191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMS  269 (434)
Q Consensus       191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~  269 (434)
                      ...+++||+++|+|+|+++|           .+++.||+++|||++++.. +++|.+|.++++|+++||.||+ |++...
T Consensus        47 ~~~~g~mG~gl~~AiGa~la-----------~p~~~Vv~i~GDG~f~~~g-~~eL~ta~~~~l~i~vvV~nN~~~g~~~~  114 (178)
T cd02008          47 IDTCTCMGASIGVAIGMAKA-----------SEDKKVVAVIGDSTFFHSG-ILGLINAVYNKANITVVILDNRTTAMTGG  114 (178)
T ss_pred             ccccccCccHHHHHhhHHhh-----------CCCCCEEEEecChHHhhcc-HHHHHHHHHcCCCEEEEEECCcceeccCC
Confidence            34689999999999999999           6788999999999997632 6999999999999877777775 443221


Q ss_pred             ccc---------cccCchhhhccccCCCcEEEE-eCCCHHHHHHHHHHHHHHHHccCCCEEEEEEE
Q 013928          270 HLR---------ATSDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVECET  325 (434)
Q Consensus       270 ~~~---------~~~~~d~~~~a~a~Gi~~~~V-dG~D~~av~~a~~~Al~~ar~~~gP~lIev~t  325 (434)
                      ...         ....+|+.+++++||+++++| +..|+.++.+++++|+    +.++|+||+++.
T Consensus       115 ~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~~~~al~~a~----~~~gp~lI~v~~  176 (178)
T cd02008         115 QPHPGTGKTLTEPTTVIDIEALVRAIGVKRVVVVDPYDLKAIREELKEAL----AVPGVSVIIAKR  176 (178)
T ss_pred             CCCCCCcccccCCCCccCHHHHHHHCCCCEEEecCccCHHHHHHHHHHHH----hCCCCEEEEEeC
Confidence            110         012468999999999999999 5667666666666554    468999999964

IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.

>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions

Probab=99.74  E-value=1.2e-17  Score=154.32  Aligned_cols=118  Identities=25%  Similarity=0.326  Sum_probs=93.6

Q ss_pred             cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCccc
Q 013928          191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMS  269 (434)
Q Consensus       191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~  269 (434)
                      .+..|+||+++|+|+|+++|           .++++|+|++|||+++++  ..+|.++.++++|+++||.||+ |++...
T Consensus        47 ~~~~g~mG~~~~~aiGa~~a-----------~~~~~vv~i~GDG~f~~~--~~el~t~~~~~lp~~~iv~NN~~~~~~~~  113 (178)
T cd02014          47 SGLLATMGNGLPGAIAAKLA-----------YPDRQVIALSGDGGFAML--MGDLITAVKYNLPVIVVVFNNSDLGFIKW  113 (178)
T ss_pred             CCCCchhhhHHHHHHHHHHh-----------CCCCcEEEEEcchHHHhh--HHHHHHHHHhCCCcEEEEEECCchhHHHH
Confidence            45679999999999999999           678899999999999998  6779999999999988888885 665221


Q ss_pred             c---------cccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928          270 H---------LRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR  327 (434)
Q Consensus       270 ~---------~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R  327 (434)
                      .         ......+|+.+++++||+++++|+.  +.++.++++    .+++.++|+|||+.+.+
T Consensus       114 ~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~~--~~el~~~l~----~a~~~~~p~liev~~~~  174 (178)
T cd02014         114 EQEVMGQPEFGVDLPNPDFAKIAEAMGIKGIRVED--PDELEAALD----EALAADGPVVIDVVTDP  174 (178)
T ss_pred             HHHHhcCCceeccCCCCCHHHHHHHCCCeEEEeCC--HHHHHHHHH----HHHhCCCCEEEEEEeCC
Confidence            0         0011346899999999999999984  556655544    44556899999999854

POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.

>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv

Probab=99.74  E-value=8e-18  Score=159.13  Aligned_cols=120  Identities=17%  Similarity=0.135  Sum_probs=94.7

Q ss_pred             cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCccc
Q 013928          191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMS  269 (434)
Q Consensus       191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~  269 (434)
                      .++.|+||+++|+|+|+++|           .+++.|||++|||+|+++  ..+|.+|+++++|+++||.||+ |++...
T Consensus        44 ~~~~gsmG~~lpaAiGa~la-----------~p~~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~  110 (205)
T cd02003          44 EYGYSCMGYEIAAGLGAKLA-----------KPDREVYVLVGDGSYLML--HSEIVTAVQEGLKIIIVLFDNHGFGCINN  110 (205)
T ss_pred             CCCcchhhhHHHHHHHHHHh-----------CCCCeEEEEEccchhhcc--HHHHHHHHHcCCCCEEEEEECCccHHHHH
Confidence            35789999999999999999           688999999999999987  6899999999999777776664 554211


Q ss_pred             cc-----------c------------cccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEe
Q 013928          270 HL-----------R------------ATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETY  326 (434)
Q Consensus       270 ~~-----------~------------~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~  326 (434)
                      ..           .            ....+|+.+++++||+++.+|+  ++.++.+++++|+    +.++|+|||+.+.
T Consensus       111 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~----~~~gp~lIeV~v~  184 (205)
T cd02003         111 LQESTGSGSFGTEFRDRDQESGQLDGALLPVDFAANARSLGARVEKVK--TIEELKAALAKAK----ASDRTTVIVIKTD  184 (205)
T ss_pred             HHHHhcCccccchhcccccccccccCCCCCCCHHHHHHhCCCEEEEEC--CHHHHHHHHHHHH----hCCCCEEEEEEee
Confidence            00           0            0124799999999999999996  6678777666654    5689999999986


Q ss_pred             cCC
Q 013928          327 RFR  329 (434)
Q Consensus       327 R~~  329 (434)
                      +..
T Consensus       185 ~~~  187 (205)
T cd02003         185 PKS  187 (205)
T ss_pred             ccc
Confidence            543

viciae IolD. IolD plays an important role in myo-inositol catabolism.

>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE)

Probab=99.73  E-value=3.1e-17  Score=152.14  Aligned_cols=129  Identities=17%  Similarity=0.230  Sum_probs=96.9

Q ss_pred             cccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCC-CeEEEE-EcCCccCccccc
Q 013928          194 FAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKL-PIVFVV-ENNLWAIGMSHL  271 (434)
Q Consensus       194 ~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~L-PvI~VV-~NN~y~is~~~~  271 (434)
                      +|+||+++|.|+|+++|           .+ ++|||++|||+++++  .++|.++.++++ |+++|| +||+|++.....
T Consensus        41 ~g~mG~~lp~AiGaala-----------~~-~~vv~i~GDG~f~m~--~~el~ta~~~~~~~l~vvV~NN~~~~~~~~~~  106 (179)
T cd03372          41 LGSMGLASSIGLGLALA-----------QP-RKVIVIDGDGSLLMN--LGALATIAAEKPKNLIIVVLDNGAYGSTGNQP  106 (179)
T ss_pred             ccchhhHHHHHHHHHhc-----------CC-CcEEEEECCcHHHhC--HHHHHHHHHcCCCCEEEEEEcCccccccCCCC
Confidence            79999999999999999           45 789999999999876  689999999995 666655 555677643221


Q ss_pred             ccc-cCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCCCCCCCCCHHHHH
Q 013928          272 RAT-SDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKA  346 (434)
Q Consensus       272 ~~~-~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~~D~~~yR~~~e~~  346 (434)
                      ... ..+|+.+++++||+++.+|++ ++.++.++++++    +  ++|++||+.|.+..+ +  .+-.++++.+.+
T Consensus       107 ~~~~~~~d~~~lA~a~G~~~~~v~~-~~~el~~al~~a----~--~gp~lIev~~~~~~~-~--~~~~~~~~~~~~  172 (179)
T cd03372         107 THAGKKTDLEAVAKACGLDNVATVA-SEEAFEKAVEQA----L--DGPSFIHVKIKPGNT-D--VPNIPRDPVEIK  172 (179)
T ss_pred             CCCCCCCCHHHHHHHcCCCeEEecC-CHHHHHHHHHHh----c--CCCEEEEEEEcCCCC-C--CCCCCCCHHHHH
Confidence            111 257899999999999999997 677777766555    3  689999999965544 1  233455555443

M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.

>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation

Probab=99.73  E-value=6.5e-18  Score=156.25  Aligned_cols=118  Identities=23%  Similarity=0.372  Sum_probs=94.6

Q ss_pred             cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCccc
Q 013928          191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMS  269 (434)
Q Consensus       191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~  269 (434)
                      .+++|+||+++|.|+|+++|           .+++.|||++|||+|+++  .++|.+|+++++|+++||.||+ |++...
T Consensus        44 ~~~~g~mG~~lp~aiGa~la-----------~~~~~vv~i~GDG~f~m~--~~eL~ta~~~~l~vi~vV~NN~~~g~~~~  110 (177)
T cd02010          44 SNGLATMGVALPGAIGAKLV-----------YPDRKVVAVSGDGGFMMN--SQELETAVRLKIPLVVLIWNDNGYGLIKW  110 (177)
T ss_pred             CCCChhhhhHHHHHHHHHHh-----------CCCCcEEEEEcchHHHhH--HHHHHHHHHHCCCeEEEEEECCcchHHHH
Confidence            56789999999999999999           688999999999999986  6899999999999888877765 554211


Q ss_pred             cc---------ccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928          270 HL---------RATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR  327 (434)
Q Consensus       270 ~~---------~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R  327 (434)
                      .+         .....+|+.+++++||+++.+|+  +++++.+++++++    ..++|+|||+.+.+
T Consensus       111 ~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~----~~~~p~liev~~~~  171 (177)
T cd02010         111 KQEKEYGRDSGVDFGNPDFVKYAESFGAKGYRIE--SADDLLPVLERAL----AADGVHVIDCPVDY  171 (177)
T ss_pred             HHHHhcCCcccCcCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHH----hCCCCEEEEEEecc
Confidence            00         00124689999999999999997  5667777666664    46899999999854

ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.

>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]

Probab=99.72  E-value=2.7e-16  Score=164.55  Aligned_cols=216  Identities=20%  Similarity=0.229  Sum_probs=151.2

Q ss_pred             HHHHHHHHHHHHHHHhcCeecccccCCCCh-HHHHHHHHHhcC--C-------CCEEEcc--Ccc---hHHHHHcCC-CH
Q 013928           96 MILGRSFEDMCAQMYYRGKMFGFVHLYNGQ-EAVSTGFIKLLK--K-------EDSVVST--YRD---HVHALSKGV-PA  159 (434)
Q Consensus        96 M~~~R~fe~~~~~~~~~gk~~G~~h~~~Gq-Ea~~~g~~~~L~--~-------~D~v~~~--yR~---~~~~La~G~-~~  159 (434)
                      |-.+|..+-.+...-..    |..+.+.|. |.+.+..-..|+  +       .|.++.+  |-+   +++....|. +.
T Consensus        14 ~n~lri~si~~~~~a~s----ghp~s~~s~A~~~~vlf~~~mr~~~~~p~~~n~Drfvls~GHa~~llYa~~~l~G~~~~   89 (632)
T KOG0523|consen   14 VNNLRILSIDATSAAKS----GHPGSPLSLAPIMHVLFFEVMRYNPADPYWFNRDRFVLSNGHACPLLYAHWHLAGYDRE   89 (632)
T ss_pred             hhhhhhhhHHHHHhhhc----CCCCCccccchhhhhhhhhheecccCCcCCCCCceEEEeccccchHHHHHHHHhccCcH
Confidence            45566665443333233    444445553 223333333333  2       4655553  343   333333564 44


Q ss_pred             HHH--HHHHhcCCCCCccCCCCCcccccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccc
Q 013928          160 RAV--MSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCN  237 (434)
Q Consensus       160 ~~i--~~el~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~  237 (434)
                      +++  |+++-++.+++...         +...+.-++|++|++++.|+|+|++.|+.+      ..+..|+|++|||+++
T Consensus        90 edl~~~Rq~~s~t~ghp~~---------~~~~v~v~TG~lgQgis~a~GmA~~~k~~~------k~~~rv~~vlGDG~~~  154 (632)
T KOG0523|consen   90 EDLKNFRQIGSDTPGHPEP---------ELPGVEVATGPLGQGISNAVGMAYAGKHLG------KASNRVYCVLGDGCLT  154 (632)
T ss_pred             HHHHHHHhhCCCCCCCCcc---------cCCCceeccCCccchHHHHHHHHHHHHhhc------cccceEEEEEcCchhc
Confidence            444  45555555544321         112344567999999999999999999884      2478899999999999


Q ss_pred             cchHHHHHHHHHHcCCC-eEEEEEcCCccCcccccccccCchhhh-ccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHcc
Q 013928          238 NGQFFECLNMAALWKLP-IVFVVENNLWAIGMSHLRATSDPQIYK-KGPAFGMPGFHVDGMDVLKVREVAKEAIERARRG  315 (434)
Q Consensus       238 ~G~~~EaLn~A~~~~LP-vI~VV~NN~y~is~~~~~~~~~~d~~~-~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~  315 (434)
                      +|++||++++|+.|+|+ +|+|.+||+.+++..+.... ..|+.+ +.++|||+++.|||.|++++.+++.+|.   ...
T Consensus       155 eG~~~EA~s~Ag~l~ldnLVai~D~n~is~~g~t~~~~-~~dV~~~r~ea~g~~~~~V~~~d~d~i~ka~~~a~---~~k  230 (632)
T KOG0523|consen  155 EGSVWEAMSLAGHLKLDNLVAIYDNNKISIDGATSLGF-DEDVYQLRFEAFGWNVIIVDGGDVDEIRKAIGKAK---SVK  230 (632)
T ss_pred             cchHHHHHhhhhhcccCCEEEEEccccccCCCCCcccc-cccHHHHHHHHhCceEEEEcCcCHHHHHHHHhhhh---hcc
Confidence            99999999999999999 88888899989988776554 567777 9999999999999999888888777665   245


Q ss_pred             CCCEEEEEEEecCCCCCCC
Q 013928          316 EGPTLVECETYRFRGHSLA  334 (434)
Q Consensus       316 ~gP~lIev~t~R~~gHs~~  334 (434)
                      ++|++|-++|+.++|-...
T Consensus       231 ~kpt~i~~~t~~g~G~~~i  249 (632)
T KOG0523|consen  231 GKPTAIKATTFIGRGSPYI  249 (632)
T ss_pred             CCceeeeeeeeeecCcccc
Confidence            7899999999999986543

>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor

Probab=99.72  E-value=7e-18  Score=151.85  Aligned_cols=116  Identities=31%  Similarity=0.487  Sum_probs=95.3

Q ss_pred             cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCccc
Q 013928          191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMS  269 (434)
Q Consensus       191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~  269 (434)
                      ....++||+++|.|+|+++|           .|+++|||++|||+|.+.  ..+|.++.++++|+++||.||+ |++...
T Consensus        24 ~~~~g~mG~~~~~aiGa~~a-----------~p~~~vv~i~GDG~f~~~--~~el~ta~~~~~~v~~vv~nN~~~~~~~~   90 (153)
T PF02775_consen   24 SGGFGSMGYALPAAIGAALA-----------RPDRPVVAITGDGSFLMS--LQELATAVRYGLPVVIVVLNNGGYGMTGG   90 (153)
T ss_dssp             STTTT-TTTHHHHHHHHHHH-----------STTSEEEEEEEHHHHHHH--GGGHHHHHHTTSSEEEEEEESSBSHHHHH
T ss_pred             CCCccccCCHHHhhhHHHhh-----------cCcceeEEecCCcceeec--cchhHHHhhccceEEEEEEeCCcceEecc
Confidence            45789999999999999998           789999999999999886  7899999999999888888775 433211


Q ss_pred             cc----------c---cccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEE
Q 013928          270 HL----------R---ATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC  323 (434)
Q Consensus       270 ~~----------~---~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev  323 (434)
                      ..          .   ....+|+.+++++||+++.+|+..|++++.+++++|+    +.++|+||||
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~~el~~al~~a~----~~~gp~vIeV  153 (153)
T PF02775_consen   91 QQTPFGGGRFSGVDGKTFPNPDFAALAEAFGIKGARVTTPDPEELEEALREAL----ESGGPAVIEV  153 (153)
T ss_dssp             HHHHTTSTCHHSTBTTTSTTCGHHHHHHHTTSEEEEESCHSHHHHHHHHHHHH----HSSSEEEEEE
T ss_pred             ccccCcCcccccccccccccCCHHHHHHHcCCcEEEEccCCHHHHHHHHHHHH----hCCCcEEEEc
Confidence            10          0   1345789999999999999999888889888777665    6789999997

It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....

>PRK06163 hypothetical protein; Provisional

Probab=99.72  E-value=4.7e-17  Score=153.73  Aligned_cols=130  Identities=19%  Similarity=0.292  Sum_probs=99.5

Q ss_pred             cccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHc-CCCeEEEEEcCC-ccCccccc
Q 013928          194 FAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALW-KLPIVFVVENNL-WAIGMSHL  271 (434)
Q Consensus       194 ~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~-~LPvI~VV~NN~-y~is~~~~  271 (434)
                      +|+||+++|+|+|+++|           .|+++|||++|||+|++.  .++|.+++++ ++|+++||.||+ |++.....
T Consensus        56 ~GsMG~glpaAiGaalA-----------~p~r~Vv~i~GDG~f~m~--~~eL~Ta~~~~~lpi~ivV~NN~~yg~~~~~~  122 (202)
T PRK06163         56 LGSMGLAFPIALGVALA-----------QPKRRVIALEGDGSLLMQ--LGALGTIAALAPKNLTIIVMDNGVYQITGGQP  122 (202)
T ss_pred             ecccccHHHHHHHHHHh-----------CCCCeEEEEEcchHHHHH--HHHHHHHHHhcCCCeEEEEEcCCchhhcCCcc
Confidence            78999999999999999           788999999999999986  7899999887 689888888884 55422111


Q ss_pred             -ccccCchhhhccccCCCc-EEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCCCCCCCCCHHHHH
Q 013928          272 -RATSDPQIYKKGPAFGMP-GFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKA  346 (434)
Q Consensus       272 -~~~~~~d~~~~a~a~Gi~-~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~~D~~~yR~~~e~~  346 (434)
                       .....+|+.+++++||++ +++|+  ++.++..++++++    +.++|+|||+.+.+...-+    ...|++.|.+
T Consensus       123 ~~~~~~~Df~~lA~a~G~~~~~~v~--~~~el~~al~~a~----~~~~p~lIeV~i~~~~~~~----~~~~~~~~~~  189 (202)
T PRK06163        123 TLTSQTVDVVAIARGAGLENSHWAA--DEAHFEALVDQAL----SGPGPSFIAVRIDDKPGVG----TTERDPAQIR  189 (202)
T ss_pred             CCCCCCCCHHHHHHHCCCceEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEecCCCCCC----CCCCCHHHHH
Confidence             111347999999999998 67887  5668777666665    4589999999986433211    2246777765

>TIGR01504 glyox_carbo_lig glyoxylate carboligase

Probab=99.71  E-value=2.1e-17  Score=178.98  Aligned_cols=121  Identities=21%  Similarity=0.204  Sum_probs=98.0

Q ss_pred             cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccc
Q 013928          191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH  270 (434)
Q Consensus       191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~  270 (434)
                      .+++|+||+++|.|+|+++|           .|+++||+++|||+|+++  .++|.||.++++|+++||.||+ +++...
T Consensus       414 ~~~~gsmG~glpaaiGa~lA-----------~pdr~Vv~i~GDG~f~m~--~~EL~Ta~r~~lpvv~iV~NN~-~yg~i~  479 (588)
T TIGR01504       414 CGQAGPLGWTIPAALGVCAA-----------DPKRNVVALSGDYDFQFM--IEELAVGAQHNIPYIHVLVNNA-YLGLIR  479 (588)
T ss_pred             CCccccccchHhHHHhhhhh-----------CCCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCC-chHHHH
Confidence            45679999999999999999           789999999999999997  7899999999999888888776 333221


Q ss_pred             cccc----------------------cCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928          271 LRAT----------------------SDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR  327 (434)
Q Consensus       271 ~~~~----------------------~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R  327 (434)
                      ..|.                      .++||.+++++||+++.+|+  ++.++..++++|++...+.++|+|||+.+.+
T Consensus       480 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~~~~~~~~p~lIeV~i~~  556 (588)
T TIGR01504       480 QAQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVF--KPEEIAPAFEQAKALMAEHRVPVVVEVILER  556 (588)
T ss_pred             HHHHHhcccccceeeccccccccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEEEecc
Confidence            1100                      14789999999999999997  5668888877777544346899999999854

Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.

>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC)

Probab=99.70  E-value=5.6e-17  Score=150.82  Aligned_cols=119  Identities=22%  Similarity=0.242  Sum_probs=92.3

Q ss_pred             cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcC-CccCccc
Q 013928          191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN-LWAIGMS  269 (434)
Q Consensus       191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN-~y~is~~  269 (434)
                      .+.+|+||+++|.|+|+++|           .+++.|+|++|||+|+++  ..+|.+++++++|+++||.|| +|++...
T Consensus        46 ~~~~g~mG~~l~~aiGaala-----------~~~~~vv~i~GDG~f~~~--~~el~ta~~~~~p~~ivV~nN~~~~~~~~  112 (183)
T cd02005          46 QPLWGSIGYSVPAALGAALA-----------APDRRVILLVGDGSFQMT--VQELSTMIRYGLNPIIFLINNDGYTIERA  112 (183)
T ss_pred             ccchhhHhhhHHHHHHHHHh-----------CCCCeEEEEECCchhhcc--HHHHHHHHHhCCCCEEEEEECCCcEEEEE
Confidence            46789999999999999999           678899999999999886  566999999999966666655 5654321


Q ss_pred             ccc------cccCchhhhccccCC----CcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928          270 HLR------ATSDPQIYKKGPAFG----MPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR  327 (434)
Q Consensus       270 ~~~------~~~~~d~~~~a~a~G----i~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R  327 (434)
                      .+.      ....+|+.+++++||    +++.+|+  ++.++.++++++++   ..++|+|||+.+.+
T Consensus       113 ~~~~~~~~~~~~~~d~~~ia~a~G~~~~~~~~~v~--~~~el~~al~~a~~---~~~~p~liev~~~~  175 (183)
T cd02005         113 IHGPEASYNDIANWNYTKLPEVFGGGGGGLSFRVK--TEGELDEALKDALF---NRDKLSLIEVILPK  175 (183)
T ss_pred             eccCCcCcccCCCCCHHHHHHHhCCCccccEEEec--CHHHHHHHHHHHHh---cCCCcEEEEEEcCc
Confidence            111      112478999999999    7888886  56788776666653   25799999999864

PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.

>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=99.70  E-value=4.3e-17  Score=174.87  Aligned_cols=120  Identities=28%  Similarity=0.376  Sum_probs=99.5

Q ss_pred             cccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcc
Q 013928          189 NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGM  268 (434)
Q Consensus       189 ~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~  268 (434)
                      ..+++.|+||+++|+|+|++++           .|++.|||+.|||+|+|.  .++|.||.++++|+++||.||+ ++++
T Consensus       402 ~~s~~~GtMG~glPaAIGAkla-----------~P~r~Vv~i~GDG~F~m~--~qEL~Ta~r~~lpv~ivv~nN~-~~g~  467 (550)
T COG0028         402 LTSGGLGTMGFGLPAAIGAKLA-----------APDRKVVAIAGDGGFMMN--GQELETAVRYGLPVKIVVLNNG-GYGM  467 (550)
T ss_pred             EcCCCCccccchHHHHHHHHhh-----------CCCCcEEEEEcccHHhcc--HHHHHHHHHhCCCEEEEEEECC-cccc
Confidence            4467899999999999999999           789999999999999997  8999999999999999999887 5554


Q ss_pred             cccccc-----------cCch-hhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecC
Q 013928          269 SHLRAT-----------SDPQ-IYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF  328 (434)
Q Consensus       269 ~~~~~~-----------~~~d-~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~  328 (434)
                      ....|.           .... |.++|++||+++++|+  ++.++..++++|    .+.++|+|||+.+.+.
T Consensus       468 v~~~q~~~~~~~~~~~~~~~~~f~klAea~G~~g~~v~--~~~el~~al~~a----l~~~~p~lidv~id~~  533 (550)
T COG0028         468 VRQWQELFYGGRYSGTDLGNPDFVKLAEAYGAKGIRVE--TPEELEEALEEA----LASDGPVLIDVVVDPE  533 (550)
T ss_pred             chHHHHHhcCCCcceeecCCccHHHHHHHcCCeeEEeC--CHHHHHHHHHHH----HhCCCCEEEEEEecCc
Confidence            443322           0112 9999999999999999  666777755555    5678999999999765

>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase

Probab=99.70  E-value=4.1e-16  Score=169.27  Aligned_cols=232  Identities=13%  Similarity=0.129  Sum_probs=169.7

Q ss_pred             HHHhhcCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcC-CCCEEEc--cCc
Q 013928           71 VKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLK-KEDSVVS--TYR  147 (434)
Q Consensus        71 ~~~~~~~~~~~~~~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~-~~D~v~~--~yR  147 (434)
                      ++++|+.+..-..++.++|.+|-..   +|.+=   ..... .+..|++.++.|---+.+|+..+++ |.|.++.  .|.
T Consensus        78 ~L~~i~~P~dlk~L~~~eL~~La~E---iR~~l---i~~v~-s~~GGHl~snLGvVELTvALH~VFd~p~DkiiwDvgHQ  150 (701)
T PLN02225         78 ILDSIETPLQLKNLSVKELKLLADE---IRTEL---HSVLW-KKTQKSMNPSFAAIELTLALHYVFRAPVDNILWDAVEQ  150 (701)
T ss_pred             hhhhcCCHHHHhhCCHHHHHHHHHH---HHHHH---HHHhh-cccCCCcCCCccHHHHHHHHHHHhCCCCCceeeccccc
Confidence            6899999888888999999888755   55542   22220 1234788889999999999999998 7998888  899


Q ss_pred             chHHHHHcCCCHHHHHHHHhcCCCCCccCCCCCcccccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceE
Q 013928          148 DHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVT  227 (434)
Q Consensus       148 ~~~~~La~G~~~~~i~~el~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~v  227 (434)
                      .+.|.|..|..-  -|. .  +..   .|-.|-......++-.+ +.|+-+.++++|+|+|.|..++       +.++.|
T Consensus       151 ~Y~HKiLTGR~~--~f~-~--Rq~---~GlsGf~~r~ES~~D~f-~~GHssTSiSaalG~a~ardl~-------g~~~~v  214 (701)
T PLN02225        151 TYAHKVLTRRWS--AIP-S--RQK---NGISGVTSQLESEYDSF-GTGHGCNSISAGLGLAVARDIK-------GKRDRV  214 (701)
T ss_pred             cchhhHhcCChh--hcC-c--ccc---CCcCCCCCCCCCCCCCC-CCChHHHHHHHHHHHHHHHHhc-------CCCCcE
Confidence            999999988541  121 1  111   12222111111112222 3578889999999999998877       567889


Q ss_pred             EEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCccc--------cccc--------c-----------------
Q 013928          228 LAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMS--------HLRA--------T-----------------  274 (434)
Q Consensus       228 v~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~--------~~~~--------~-----------------  274 (434)
                      |+++|||++.-|+.+|+||.|+..+-++|+|+++|+++|+.+        ....        +                 
T Consensus       215 vaVIGDGaltgGma~EaLN~~g~~~~~livILNDN~mSi~~n~~~~~~~~vG~ls~~l~~l~~~~~y~~~~~~~~~~~~~  294 (701)
T PLN02225        215 VAVIDNATITAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPNMEEGSKASISALSSIMSKIQSSKIFRKFRELAKAMTKR  294 (701)
T ss_pred             EEEEcCcchhhhhHHHHHhhhhccCCCEEEEEeCCCCCCCCCCCCccCCccchHHHHHHHHhccchHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999876        1100        0                 


Q ss_pred             -cC---------c----h---h-h-hccccCCCcEE-EEeCCCHHHHHHHHHHHHHHHHccC--CCEEEEEEEecCC
Q 013928          275 -SD---------P----Q---I-Y-KKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGE--GPTLVECETYRFR  329 (434)
Q Consensus       275 -~~---------~----d---~-~-~~a~a~Gi~~~-~VdG~D~~av~~a~~~Al~~ar~~~--gP~lIev~t~R~~  329 (434)
                       +.         .    .   - . .+++.+|+.++ .|||||+.++..+++.+    +..+  +|+||+++|-++.
T Consensus       295 ~~~~~~~~~~~~~~~~k~~~~~~~~~lFe~lG~~Y~GpvDGHdi~~Li~~l~~~----k~~~~~~PvlvHv~T~KGk  367 (701)
T PLN02225        295 IGKGMYEWAAKVDEYARGMVGPTGSTLFEELGLYYIGPVDGHNIEDLVCVLREV----SSLDSMGPVLVHVITEENR  367 (701)
T ss_pred             CCHHHHHHHHHHHHHhhhccCCCccCcHHHcCCeEECccCCCCHHHHHHHHHHH----HcCCCCCCEEEEEEecCCC
Confidence             00         0    0   0 1 36688999998 89999999998866654    4444  9999999999887

>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins

Probab=99.70  E-value=9.6e-17  Score=149.99  Aligned_cols=118  Identities=17%  Similarity=0.187  Sum_probs=92.9

Q ss_pred             cccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCC-CeEEEEEcCC-ccCccccc
Q 013928          194 FAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKL-PIVFVVENNL-WAIGMSHL  271 (434)
Q Consensus       194 ~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~L-PvI~VV~NN~-y~is~~~~  271 (434)
                      +|+||+++|.|+|+++|           .+++.|||++|||+|++.  .++|.+++++++ |+++||.||+ |++.....
T Consensus        47 ~g~mG~~lpaAiGaala-----------~p~~~Vv~i~GDG~f~m~--~~eL~ta~~~~l~~i~ivV~NN~~yg~~~~~~  113 (188)
T cd03371          47 VGSMGHASQIALGIALA-----------RPDRKVVCIDGDGAALMH--MGGLATIGGLAPANLIHIVLNNGAHDSVGGQP  113 (188)
T ss_pred             cCccccHHHHHHHHHHh-----------CCCCcEEEEeCCcHHHhh--ccHHHHHHHcCCCCcEEEEEeCchhhccCCcC
Confidence            38999999999999999           678899999999999876  689999999997 5777777775 54422111


Q ss_pred             ccccCchhhhccccCCCcE-EEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCC
Q 013928          272 RATSDPQIYKKGPAFGMPG-FHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRG  330 (434)
Q Consensus       272 ~~~~~~d~~~~a~a~Gi~~-~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~g  330 (434)
                      .....+|+.+++++||+++ .+|+  ++.++.+++++++    +.++|+|||+.+.+..+
T Consensus       114 ~~~~~~d~~~~A~a~G~~~~~~v~--~~~el~~al~~a~----~~~~p~lIev~~~~~~~  167 (188)
T cd03371         114 TVSFDVSLPAIAKACGYRAVYEVP--SLEELVAALAKAL----AADGPAFIEVKVRPGSR  167 (188)
T ss_pred             CCCCCCCHHHHHHHcCCceEEecC--CHHHHHHHHHHHH----hCCCCEEEEEEecCCCC
Confidence            1123579999999999997 5787  6778877666664    45799999999976554

PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.

>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD)

Probab=99.70  E-value=3.3e-17  Score=151.17  Aligned_cols=115  Identities=21%  Similarity=0.207  Sum_probs=90.9

Q ss_pred             cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCccc
Q 013928          191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMS  269 (434)
Q Consensus       191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~  269 (434)
                      ..+.+.||+++|.|+|+++|           . +++|||++|||+|++.  .++|.+|.++++|+++||.||+ |++-..
T Consensus        47 ~~g~g~mG~~l~~aiGa~la-----------~-~~~Vv~i~GDGsf~m~--~~eL~ta~~~~l~v~ivVlNN~~~g~~~~  112 (175)
T cd02009          47 NRGASGIDGTLSTALGIALA-----------T-DKPTVLLTGDLSFLHD--LNGLLLGKQEPLNLTIVVINNNGGGIFSL  112 (175)
T ss_pred             cCCccchhhHHHHHHHHHhc-----------C-CCCEEEEEehHHHHHh--HHHHHhccccCCCeEEEEEECCCCchhee
Confidence            35568899999999999999           4 6789999999999987  7899999999999888888775 543111


Q ss_pred             ccc---------cc---cCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEE
Q 013928          270 HLR---------AT---SDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECET  325 (434)
Q Consensus       270 ~~~---------~~---~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t  325 (434)
                      ...         ..   ..+|+.+++++||+++.+|+  ++.++..++++++    +.++|+|||+.+
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~----~~~~p~lIev~v  174 (175)
T cd02009         113 LPQASFEDEFERLFGTPQGLDFEHLAKAYGLEYRRVS--SLDELEQALESAL----AQDGPHVIEVKT  174 (175)
T ss_pred             ccCCcccchhhhhhcCCCCCCHHHHHHHcCCCeeeCC--CHHHHHHHHHHHH----hCCCCEEEEEeC
Confidence            000         00   25789999999999999997  5667777666654    468999999975

SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.

>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase)

Probab=99.69  E-value=7.2e-17  Score=146.63  Aligned_cols=113  Identities=17%  Similarity=0.145  Sum_probs=90.1

Q ss_pred             cccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHc-CCCeEEEEEcCC-ccCccccc
Q 013928          194 FAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALW-KLPIVFVVENNL-WAIGMSHL  271 (434)
Q Consensus       194 ~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~-~LPvI~VV~NN~-y~is~~~~  271 (434)
                      +|+||+++|.|+|+++|           .+ ++|||++|||+|++.  .++|.++.++ ++|+++||.||+ |++.....
T Consensus        41 ~gsmG~~lp~AiGa~~a-----------~~-~~Vv~i~GDG~f~m~--~~el~t~~~~~~~~i~~vV~nN~~~g~~~~~~  106 (157)
T cd02001          41 LGSMGLAGSIGLGLALG-----------LS-RKVIVVDGDGSLLMN--PGVLLTAGEFTPLNLILVVLDNRAYGSTGGQP  106 (157)
T ss_pred             ecchhhHHHHHHHHHhc-----------CC-CcEEEEECchHHHhc--ccHHHHHHHhcCCCEEEEEEeCccccccCCcC
Confidence            89999999999999998           33 789999999999876  6789999999 599888887665 55432111


Q ss_pred             ccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEe
Q 013928          272 RATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETY  326 (434)
Q Consensus       272 ~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~  326 (434)
                      .....+|+.+++++||+++++|+  ++.++.+++++++    ..++|++||+.+.
T Consensus       107 ~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~----~~~gp~vi~v~i~  155 (157)
T cd02001         107 TPSSNVNLEAWAAACGYLVLSAP--LLGGLGSEFAGLL----ATTGPTLLHAPIA  155 (157)
T ss_pred             CCCCCCCHHHHHHHCCCceEEcC--CHHHHHHHHHHHH----hCCCCEEEEEEec
Confidence            11125799999999999999986  5778888777665    4579999999874

Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.

>PRK06154 hypothetical protein; Provisional

Probab=99.69  E-value=1.1e-16  Score=172.71  Aligned_cols=121  Identities=21%  Similarity=0.242  Sum_probs=97.6

Q ss_pred             cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccc
Q 013928          191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH  270 (434)
Q Consensus       191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~  270 (434)
                      .+.+|+||+++|.|+|+++|           .+++.|||++|||+|++.  .++|.||++++||+++||.||+ +++...
T Consensus       427 ~~~~gsmG~glpaaiGa~la-----------~p~r~Vv~i~GDG~f~m~--~~EL~Ta~r~~lpi~~vV~NN~-~yg~~~  492 (565)
T PRK06154        427 WGKTTQLGYGLGLAMGAKLA-----------RPDALVINLWGDAAFGMT--GMDFETAVRERIPILTILLNNF-SMGGYD  492 (565)
T ss_pred             cCCCcccccHHHHHHHHHHh-----------CCCCcEEEEEcchHHhcc--HHHHHHHHHhCCCeEEEEEECC-ccceee
Confidence            34679999999999999999           788999999999999997  7899999999999888888886 333222


Q ss_pred             ccc----------ccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecC
Q 013928          271 LRA----------TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF  328 (434)
Q Consensus       271 ~~~----------~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~  328 (434)
                      ..+          ..++||.+++++||+++.+|+  ++.++.+++++|++..+ .++|+|||+.+.+.
T Consensus       493 ~~~~~~~~~~~~~~~~~df~~lA~a~G~~g~~V~--~~~el~~al~~a~~~~~-~~~p~lIev~v~~~  557 (565)
T PRK06154        493 KVMPVSTTKYRATDISGDYAAIARALGGYGERVE--DPEMLVPALLRALRKVK-EGTPALLEVITSEE  557 (565)
T ss_pred             hhhhhhcCcccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhcc-CCCeEEEEEEeChH
Confidence            110          114689999999999999998  56788888887775432 46899999988543

>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit

Probab=99.69  E-value=1.2e-16  Score=148.58  Aligned_cols=113  Identities=19%  Similarity=0.248  Sum_probs=89.6

Q ss_pred             cccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcC-CCeEEEEEcCC-ccCccccc
Q 013928          194 FAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWK-LPIVFVVENNL-WAIGMSHL  271 (434)
Q Consensus       194 ~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~-LPvI~VV~NN~-y~is~~~~  271 (434)
                      +|+||+++|+|+|+++|           . +++|||++|||+|+++  .++|.++++++ +|+++||.||+ |++.....
T Consensus        41 ~gsmG~~lpaAiGa~la-----------~-~~~Vv~i~GDG~f~m~--~~el~ta~~~~~~pv~~vV~NN~~yg~~~~q~  106 (181)
T TIGR03846        41 LGSMGLASSIGLGLALA-----------T-DRTVIVIDGDGSLLMN--LGVLPTIAAESPKNLILVILDNGAYGSTGNQP  106 (181)
T ss_pred             ccccccHHHHHHHHHHc-----------C-CCcEEEEEcchHHHhh--hhHHHHHHHhCCCCeEEEEEeCCccccccCcC
Confidence            79999999999999999           5 7889999999999987  68999999999 59888888776 55432111


Q ss_pred             ccc-cCchhhhccccCCCcEEE-EeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928          272 RAT-SDPQIYKKGPAFGMPGFH-VDGMDVLKVREVAKEAIERARRGEGPTLVECETYR  327 (434)
Q Consensus       272 ~~~-~~~d~~~~a~a~Gi~~~~-VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R  327 (434)
                      ... ..+|+.+++++||+++.+ |+  ++.++.++++ +    .+.++|+|||+.+.+
T Consensus       107 ~~~~~~~d~~~lA~a~G~~~~~~v~--~~~~l~~al~-a----~~~~~p~li~v~~~~  157 (181)
T TIGR03846       107 TPASRRTDLELVAKAAGIRNVEKVA--DEEELRDALK-A----LAMKGPTFIHVKVKP  157 (181)
T ss_pred             CCCCCCCCHHHHHHHCCCCeEEEeC--CHHHHHHHHH-H----HcCCCCEEEEEEeCC
Confidence            111 257899999999999998 75  5567766553 3    356799999999854

Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).

>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor

Probab=99.68  E-value=2.3e-16  Score=147.97  Aligned_cols=119  Identities=23%  Similarity=0.257  Sum_probs=92.2

Q ss_pred             cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccc-cccchHHHHHHHHHHcCCCeEEEEEcCC-ccCcc
Q 013928          191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGT-CNNGQFFECLNMAALWKLPIVFVVENNL-WAIGM  268 (434)
Q Consensus       191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa-~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~  268 (434)
                      ....++||+++|+|+|+++|           .|+++||++.|||+ ++++  .++|.+|.++++|+++||.||+ |++..
T Consensus        47 ~~~~g~mG~glpaAiGa~la-----------~p~r~Vv~i~GDGs~f~m~--~~eL~ta~~~~lpv~iiVlnN~~yg~~~  113 (193)
T cd03375          47 YGFHTLHGRALAVATGVKLA-----------NPDLTVIVVSGDGDLAAIG--GNHFIHAARRNIDITVIVHNNQIYGLTK  113 (193)
T ss_pred             cchhhhhccHHHHHHHHHHh-----------CCCCeEEEEeccchHhhcc--HHHHHHHHHhCCCeEEEEEcCcccccCC
Confidence            34458999999999999999           78999999999999 5676  7899999999999888888875 44422


Q ss_pred             cccc-c---------------ccCchhhhccccCCCcEE-EEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEe
Q 013928          269 SHLR-A---------------TSDPQIYKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVECETY  326 (434)
Q Consensus       269 ~~~~-~---------------~~~~d~~~~a~a~Gi~~~-~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~  326 (434)
                      .... .               ...+|+.+++++||++++ ++.-.++.++.+++++|+    +.++|+|||+.+.
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~al----~~~gp~vIev~~~  184 (193)
T cd03375         114 GQASPTTPEGFKTKTTPYGNIEEPFNPLALALAAGATFVARGFSGDIKQLKEIIKKAI----QHKGFSFVEVLSP  184 (193)
T ss_pred             CccCCCCCCCCcccCCCCCCCCCCCCHHHHHHHCCCCEEEEEecCCHHHHHHHHHHHH----hcCCCEEEEEECC
Confidence            1110 0               013689999999999985 233456778888777766    4689999999764

In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.

>PRK07525 sulfoacetaldehyde acetyltransferase; Validated

Probab=99.68  E-value=7e-17  Score=174.91  Aligned_cols=124  Identities=23%  Similarity=0.280  Sum_probs=98.3

Q ss_pred             cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcC-CccCccc
Q 013928          191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN-LWAIGMS  269 (434)
Q Consensus       191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN-~y~is~~  269 (434)
                      .+++|+||+++|.|+|+++|           .++++|||++|||+|+++  ..+|.+|.++++|+++||.|| +|++...
T Consensus       431 ~~~~g~mG~glp~aiGa~la-----------~p~r~vv~i~GDG~f~~~--~~el~Ta~~~~lpv~ivV~NN~~y~~~~~  497 (588)
T PRK07525        431 PGSFGNCGYAFPAIIGAKIA-----------CPDRPVVGFAGDGAWGIS--MNEVMTAVRHNWPVTAVVFRNYQWGAEKK  497 (588)
T ss_pred             cccccccccHHHHHHHHHHh-----------CCCCcEEEEEcCchHhcc--HHHHHHHHHhCCCeEEEEEeCchhHHHHH
Confidence            35679999999999999999           688999999999999997  789999999999988888777 4543210


Q ss_pred             cc-----------ccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCC
Q 013928          270 HL-----------RATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRG  330 (434)
Q Consensus       270 ~~-----------~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~g  330 (434)
                      ..           .....+|+.+++++||+++++|+  ++.++..+++++++.. +.++|+|||+.+.+..|
T Consensus       498 ~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~-~~~~p~lIev~~~~~~~  566 (588)
T PRK07525        498 NQVDFYNNRFVGTELDNNVSYAGIAEAMGAEGVVVD--TQEELGPALKRAIDAQ-NEGKTTVIEIMCNQELG  566 (588)
T ss_pred             HHHHHhCCCcccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhcC-CCCCcEEEEEEeccccC
Confidence            00           00124699999999999999997  5668888888777542 23689999999976553

>PRK12474 hypothetical protein; Provisional

Probab=99.68  E-value=1.4e-16  Score=170.09  Aligned_cols=150  Identities=19%  Similarity=0.204  Sum_probs=107.2

Q ss_pred             CCHHHHHHHHhcCCCCCc--cCCCCCcc-----ccc---CCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCce
Q 013928          157 VPARAVMSELFGKATGCC--RGQGGSMH-----MFS---KEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHV  226 (434)
Q Consensus       157 ~~~~~i~~el~g~~~g~~--~G~ggs~h-----~~~---~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~  226 (434)
                      +++..++.++....++..  ..++|+..     ++.   +...+.+..|+||+++|.|+|+++|           .|++.
T Consensus       341 i~~~~~~~~l~~~l~~d~iv~~d~g~~~~~~~~~~~~~~p~~~~~~~~gsmG~glpaAiGa~lA-----------~p~r~  409 (518)
T PRK12474        341 LNSLGVAQLIAHRTPDQAIYADEALTSGLFFDMSYDRARPHTHLPLTGGSIGQGLPLAAGAAVA-----------APDRK  409 (518)
T ss_pred             cCHHHHHHHHHHHCCCCeEEEECCCcCHHHHHHhhcccCCCCEEccCCCccCccHHHHHHHHHH-----------CCCCc
Confidence            566777777766544332  23333211     111   1222334459999999999999999           78999


Q ss_pred             EEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCcccc---------cc--------cccCchhhhccccCCC
Q 013928          227 TLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSH---------LR--------ATSDPQIYKKGPAFGM  288 (434)
Q Consensus       227 vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~~---------~~--------~~~~~d~~~~a~a~Gi  288 (434)
                      |||++|||+|++.  .++|.||.+++||+++||.||+ |++-...         ..        ..+++||.+++++||+
T Consensus       410 vv~i~GDG~f~m~--~qEL~Ta~r~~lpv~iiV~NN~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~  487 (518)
T PRK12474        410 VVCPQGDGGAAYT--MQALWTMARENLDVTVVIFANRSYAILNGELQRVGAQGAGRNALSMLDLHNPELNWMKIAEGLGV  487 (518)
T ss_pred             EEEEEcCchhcch--HHHHHHHHHHCCCcEEEEEcCCcchHHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHCCC
Confidence            9999999999997  7999999999999888888886 5432100         00        0113589999999999


Q ss_pred             cEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEE
Q 013928          289 PGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECET  325 (434)
Q Consensus       289 ~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t  325 (434)
                      ++.+|+.  +.++..++++|+    +.++|+|||+.+
T Consensus       488 ~~~rv~~--~~eL~~al~~a~----~~~~p~liev~~  518 (518)
T PRK12474        488 EASRATT--AEEFSAQYAAAM----AQRGPRLIEAMI  518 (518)
T ss_pred             eEEEeCC--HHHHHHHHHHHH----cCCCCEEEEEEC
Confidence            9999985  567777666654    568999999964

>PRK07586 hypothetical protein; Validated

Probab=99.68  E-value=1e-16  Score=170.90  Aligned_cols=150  Identities=22%  Similarity=0.222  Sum_probs=106.4

Q ss_pred             CCHHHHHHHHhcCCCCCc--cCCCCCccc-----c---cCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCce
Q 013928          157 VPARAVMSELFGKATGCC--RGQGGSMHM-----F---SKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHV  226 (434)
Q Consensus       157 ~~~~~i~~el~g~~~g~~--~G~ggs~h~-----~---~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~  226 (434)
                      +++..++.++....++..  ..++|+..+     +   .+..-+.+..|+||+++|.|+|+++|           .|++.
T Consensus       337 i~~~~~~~~l~~~l~~~~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~lA-----------~p~r~  405 (514)
T PRK07586        337 LTPEAIAQVIAALLPENAIVVDESITSGRGFFPATAGAAPHDWLTLTGGAIGQGLPLATGAAVA-----------CPDRK  405 (514)
T ss_pred             cCHHHHHHHHHHhCCCCeEEEeCCCcCHHHHHHhccccCCCCEEccCCcccccHHHHHHHHHHh-----------CCCCe
Confidence            566777777766555432  233343211     1   11222334458999999999999999           68899


Q ss_pred             EEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCcccc-----c-----------c-cccCchhhhccccCCC
Q 013928          227 TLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSH-----L-----------R-ATSDPQIYKKGPAFGM  288 (434)
Q Consensus       227 vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~~-----~-----------~-~~~~~d~~~~a~a~Gi  288 (434)
                      |||++|||+|++.  .++|.+|.+++||+++||.||+ |++-...     .           . ..+.+|+.+++++||+
T Consensus       406 Vv~i~GDGsf~m~--~~EL~Ta~~~~lpv~ivV~NN~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~  483 (514)
T PRK07586        406 VLALQGDGSAMYT--IQALWTQARENLDVTTVIFANRAYAILRGELARVGAGNPGPRALDMLDLDDPDLDWVALAEGMGV  483 (514)
T ss_pred             EEEEEechHHHhH--HHHHHHHHHcCCCCEEEEEeCchhHHHHHHHHHhcCCCCCccccccccCCCCCCCHHHHHHHCCC
Confidence            9999999999987  7999999999999888877775 5532100     0           0 0124689999999999


Q ss_pred             cEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEE
Q 013928          289 PGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECET  325 (434)
Q Consensus       289 ~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t  325 (434)
                      ++.+|+.  +.++.+++++|+    +.++|+|||+.+
T Consensus       484 ~~~~V~~--~~el~~al~~a~----~~~~p~liev~~  514 (514)
T PRK07586        484 PARRVTT--AEEFADALAAAL----AEPGPHLIEAVV  514 (514)
T ss_pred             cEEEeCC--HHHHHHHHHHHH----cCCCCEEEEEEC
Confidence            9999974  567766655554    567999999963

>PRK11269 glyoxylate carboligase; Provisional

Probab=99.68  E-value=1.1e-16  Score=173.36  Aligned_cols=122  Identities=23%  Similarity=0.190  Sum_probs=98.2

Q ss_pred             cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCccc
Q 013928          191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMS  269 (434)
Q Consensus       191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~  269 (434)
                      .+++|+||+++|.|+|+++|           .+++.|||++|||+|++.  .++|.+|.++++|+++||.||+ |++-..
T Consensus       415 ~~~~G~mG~glpaAiGa~la-----------~p~r~Vv~i~GDG~f~m~--~~eL~Ta~~~~lpv~~vV~NN~~~g~i~~  481 (591)
T PRK11269        415 CGQAGPLGWTIPAALGVRAA-----------DPDRNVVALSGDYDFQFL--IEELAVGAQFNLPYIHVLVNNAYLGLIRQ  481 (591)
T ss_pred             CCccccccchhhhHHhhhhh-----------CCCCcEEEEEccchhhcC--HHHHHHHHHhCCCeEEEEEeCCchhHHHH
Confidence            45689999999999999999           678999999999999987  7899999999999888888886 543211


Q ss_pred             ccc----c----c------------cCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928          270 HLR----A----T------------SDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR  327 (434)
Q Consensus       270 ~~~----~----~------------~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R  327 (434)
                      .+.    .    .            +++||.+++++||+++.+|+  +++++..++++|++...+.++|+|||+.+.+
T Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v~--~~~eL~~al~~a~~~~~~~~gp~lieV~v~~  557 (591)
T PRK11269        482 AQRAFDMDYCVQLAFENINSPELNGYGVDHVKVAEGLGCKAIRVF--KPEDIAPALEQAKALMAEFRVPVVVEVILER  557 (591)
T ss_pred             HHHHhccCccceeeccccccccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEEEecc
Confidence            000    0    0            23789999999999999997  5668888887777544346899999999854

>PRK07979 acetolactate synthase 3 catalytic subunit; Validated

Probab=99.68  E-value=1.2e-16  Score=172.60  Aligned_cols=154  Identities=22%  Similarity=0.361  Sum_probs=113.0

Q ss_pred             CCHHHHHHHHhcCCCCCc--cCCCCCc-----ccc--cCCC--cccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCc
Q 013928          157 VPARAVMSELFGKATGCC--RGQGGSM-----HMF--SKEH--NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH  225 (434)
Q Consensus       157 ~~~~~i~~el~g~~~g~~--~G~ggs~-----h~~--~~~~--~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~  225 (434)
                      +.+..++.++....++.+  ..+.|..     +++  ..+.  ...+++|+||+++|+|+|+++|           .|++
T Consensus       372 i~~~~~~~~l~~~l~~d~ivv~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaaiGa~la-----------~p~~  440 (574)
T PRK07979        372 IKPQAVIETLWRLTKGDAYVTSDVGQHQMFAALYYPFDKPRRWINSGGLGTMGFGLPAALGVKMA-----------LPEE  440 (574)
T ss_pred             cCHHHHHHHHHhhcCCCEEEEeCCcHHHHHHHHhcccCCCCeEEeCCCccchhhHHHHHHHHHHh-----------CCCC
Confidence            667778887776554432  2333321     111  1112  2346679999999999999999           7889


Q ss_pred             eEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccc-----------c--ccCchhhhccccCCCcEEE
Q 013928          226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLR-----------A--TSDPQIYKKGPAFGMPGFH  292 (434)
Q Consensus       226 ~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~-----------~--~~~~d~~~~a~a~Gi~~~~  292 (434)
                      .|||++|||+|++.  .++|.+|.+++||+++||.||+ +++.....           .  ...+||.+++++||+++++
T Consensus       441 ~vv~i~GDG~f~m~--~~eL~Ta~r~~l~v~ivV~NN~-~yg~i~~~q~~~~~~~~~~~~~~~~~d~~~iA~a~G~~g~~  517 (574)
T PRK07979        441 TVVCVTGDGSIQMN--IQELSTALQYELPVLVLNLNNR-YLGMVKQWQDMIYSGRHSQSYMQSLPDFVRLAEAYGHVGIQ  517 (574)
T ss_pred             eEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCc-hhhHHHHHHHHhcCCccccccCCCCCCHHHHHHHCCCEEEE
Confidence            99999999999987  7999999999999888888886 33332110           0  1247999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928          293 VDGMDVLKVREVAKEAIERARRGEGPTLVECETYR  327 (434)
Q Consensus       293 VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R  327 (434)
                      |+  ++.++..++++|++..+ .++|+|||+.+.+
T Consensus       518 v~--~~~eL~~al~~a~~~~~-~~~p~lIeV~i~~  549 (574)
T PRK07979        518 IS--HPDELESKLSEALEQVR-NNRLVFVDVTVDG  549 (574)
T ss_pred             EC--CHHHHHHHHHHHHhccC-CCCcEEEEEEECC
Confidence            97  56688887777765432 3789999999864

>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase

Probab=99.67  E-value=1.5e-16  Score=171.93  Aligned_cols=122  Identities=23%  Similarity=0.232  Sum_probs=97.8

Q ss_pred             cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccc
Q 013928          191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH  270 (434)
Q Consensus       191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~  270 (434)
                      .+++|+||+++|.|+|+++|           .+++.|||++|||+|+++  .++|.+|++++||+++||.||+ +++...
T Consensus       426 ~~~~g~mG~~lpaaiGa~la-----------~p~~~Vv~i~GDG~f~m~--~~eL~Tavr~~lpvi~vV~NN~-~yg~i~  491 (579)
T TIGR03457       426 PMSFGNCGYAFPTIIGAKIA-----------APDRPVVAYAGDGAWGMS--MNEIMTAVRHDIPVTAVVFRNR-QWGAEK  491 (579)
T ss_pred             CCccccccchHHHHHhhhhh-----------CCCCcEEEEEcchHHhcc--HHHHHHHHHhCCCeEEEEEECc-chHHHH
Confidence            45679999999999999999           688999999999999997  7999999999999888888776 333221


Q ss_pred             cc------------cccC-chhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCC
Q 013928          271 LR------------ATSD-PQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR  329 (434)
Q Consensus       271 ~~------------~~~~-~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~  329 (434)
                      ..            .... +|+.+++++||+++.+|+  ++.++..++++|++.. ..++|+|||+.+.+..
T Consensus       492 ~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~g~~v~--~~~el~~al~~a~~~~-~~~~p~lieV~v~~~~  560 (579)
T TIGR03457       492 KNQVDFYNNRFVGTELESELSFAGIADAMGAKGVVVD--KPEDVGPALKKAIAAQ-AEGKTTVIEIVCTREL  560 (579)
T ss_pred             HHHHHhhCCcceeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhC-CCCCcEEEEEEeCCCc
Confidence            10            0112 599999999999999997  5678888888877543 3468999999986533

Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.

>PRK07524 hypothetical protein; Provisional

Probab=99.67  E-value=9.9e-17  Score=171.77  Aligned_cols=121  Identities=24%  Similarity=0.337  Sum_probs=98.4

Q ss_pred             cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcC-CccCcc-
Q 013928          191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN-LWAIGM-  268 (434)
Q Consensus       191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN-~y~is~-  268 (434)
                      .+++|+||+++|.|+|+++|           .++++|||++|||+|+++  .++|.+|+++++|+++||.|| +|++.. 
T Consensus       403 ~~~~g~mG~~lp~aiGa~lA-----------~p~~~vv~i~GDG~f~~~--~~el~ta~~~~lpi~~vV~NN~~~g~i~~  469 (535)
T PRK07524        403 STGYGTLGYGLPAAIGAALG-----------APERPVVCLVGDGGLQFT--LPELASAVEADLPLIVLLWNNDGYGEIRR  469 (535)
T ss_pred             CCCcccccchHHHHHHHHHh-----------CCCCcEEEEEcchHHhhh--HHHHHHHHHhCCCeEEEEEECCchHHHHH
Confidence            45679999999999999999           789999999999999987  678999999999998888888 555321 


Q ss_pred             --------cccccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCC
Q 013928          269 --------SHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRG  330 (434)
Q Consensus       269 --------~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~g  330 (434)
                              +.......+|+.+++++||+++++|+  ++.++.+++++++    +.++|+|||++++|+.+
T Consensus       470 ~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~----~~~~p~liev~~~~~~~  533 (535)
T PRK07524        470 YMVARDIEPVGVDPYTPDFIALARAFGCAAERVA--DLEQLQAALRAAF----ARPGPTLIEVDQACWFA  533 (535)
T ss_pred             HHHHhcCCccccCCCCCCHHHHHHHCCCcEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEECCcccc
Confidence                    00111235789999999999999997  6667777666554    56899999999999876

>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed

Probab=99.67  E-value=1.5e-16  Score=173.14  Aligned_cols=152  Identities=21%  Similarity=0.312  Sum_probs=111.6

Q ss_pred             CCCHHHHHHHHhcCCCCCc-cCCCCCcccc------cCC--CcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCce
Q 013928          156 GVPARAVMSELFGKATGCC-RGQGGSMHMF------SKE--HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHV  226 (434)
Q Consensus       156 G~~~~~i~~el~g~~~g~~-~G~ggs~h~~------~~~--~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~  226 (434)
                      ++.+..++.++....++.. ..+.|...++      ..+  ....+++|+||+++|.|+|+++|           .|++.
T Consensus       386 ~l~~~~v~~~l~~~~~d~i~~~D~G~~~~~~~~~~~~~p~~~~~s~~~g~mG~glpaAiGA~lA-----------~p~r~  454 (616)
T PRK07418        386 EIYPQEVLLAVRDLAPDAYYTTDVGQHQMWAAQFLRNGPRRWISSAGLGTMGFGMPAAMGVKVA-----------LPDEE  454 (616)
T ss_pred             CcCHHHHHHHHHhhCCCcEEEECChHHHHHHHHhhhcCCCeEEcCCCccccccHHHHHHHHHHh-----------CCCCc
Confidence            3677778888777655421 2344432111      111  22245789999999999999999           78999


Q ss_pred             EEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCccccccc--------------ccCchhhhccccCCCcEEE
Q 013928          227 TLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA--------------TSDPQIYKKGPAFGMPGFH  292 (434)
Q Consensus       227 vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~--------------~~~~d~~~~a~a~Gi~~~~  292 (434)
                      |||++|||+|++.  .++|.+|++++||+++||.||+ +++.....|              ...+|+.+++++||+++++
T Consensus       455 Vv~i~GDG~f~m~--~~eL~Ta~r~~lpvi~vV~NN~-~~g~i~~~q~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~g~~  531 (616)
T PRK07418        455 VICIAGDASFLMN--IQELGTLAQYGINVKTVIINNG-WQGMVRQWQESFYGERYSASNMEPGMPDFVKLAEAFGVKGMV  531 (616)
T ss_pred             EEEEEcchHhhhh--HHHHHHHHHhCCCeEEEEEECC-cchHHHHHHHHhcCCCceeecCCCCCCCHHHHHHHCCCeEEE
Confidence            9999999999986  7899999999999988888886 343322111              0247899999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928          293 VDGMDVLKVREVAKEAIERARRGEGPTLVECETYR  327 (434)
Q Consensus       293 VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R  327 (434)
                      |+  ++.++.+++++|+    +.++|+|||+.+.+
T Consensus       532 V~--~~~el~~al~~a~----~~~~p~lIeV~i~~  560 (616)
T PRK07418        532 IS--ERDQLKDAIAEAL----AHDGPVLIDVHVRR  560 (616)
T ss_pred             eC--CHHHHHHHHHHHH----hCCCCEEEEEEecC
Confidence            98  5567777666554    46789999999864

>PRK06725 acetolactate synthase 3 catalytic subunit; Validated

Probab=99.67  E-value=1.9e-16  Score=171.04  Aligned_cols=151  Identities=22%  Similarity=0.365  Sum_probs=110.5

Q ss_pred             CCHHHHHHHHhcCCCCCc--cCCCCCccc-----cc--CCC--cccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCc
Q 013928          157 VPARAVMSELFGKATGCC--RGQGGSMHM-----FS--KEH--NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH  225 (434)
Q Consensus       157 ~~~~~i~~el~g~~~g~~--~G~ggs~h~-----~~--~~~--~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~  225 (434)
                      +++..++.++....++..  ..++|+...     +.  .+.  ...+++|+||+++|.|+|+++|           .+++
T Consensus       373 l~~~~~~~~l~~~l~~d~iiv~d~g~~~~~~~~~~~~~~p~~~~~~~~~gsmG~~lp~aiGa~lA-----------~p~~  441 (570)
T PRK06725        373 LKPQHVINLVSELTNGEAIVTTEVGQHQMWAAHFYKAKNPRTFLTSGGLGTMGFGFPAAIGAQLA-----------KEEE  441 (570)
T ss_pred             cCHHHHHHHHHhhCCCCcEEEeCCcHHHHHHHHhccccCCCeEEccCCcccccchhhHHHhhHhh-----------cCCC
Confidence            667778887777654332  233343211     11  112  2245679999999999999999           6889


Q ss_pred             eEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccc------------cccCchhhhccccCCCcEEEE
Q 013928          226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLR------------ATSDPQIYKKGPAFGMPGFHV  293 (434)
Q Consensus       226 ~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~------------~~~~~d~~~~a~a~Gi~~~~V  293 (434)
                      +|||++|||+|+++  .++|.+|.++++|+++||.||+ +++.....            ...++|+.+++++||+++.+|
T Consensus       442 ~vv~i~GDG~f~~~--~~el~Ta~~~~lpi~~vV~NN~-~~~~~~~~q~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v  518 (570)
T PRK06725        442 LVICIAGDASFQMN--IQELQTIAENNIPVKVFIINNK-FLGMVRQWQEMFYENRLSESKIGSPDFVKVAEAYGVKGLRA  518 (570)
T ss_pred             eEEEEEecchhhcc--HHHHHHHHHhCCCeEEEEEECC-ccHHHHHHHHHhcCCccccCcCCCCCHHHHHHHCCCeEEEe
Confidence            99999999999887  6899999999999999998886 33322111            112578999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928          294 DGMDVLKVREVAKEAIERARRGEGPTLVECETYR  327 (434)
Q Consensus       294 dG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R  327 (434)
                      +  ++.++..+++++    ++.++|+|||+.+.+
T Consensus       519 ~--~~~~l~~al~~a----~~~~~p~liev~id~  546 (570)
T PRK06725        519 T--NSTEAKQVMLEA----FAHEGPVVVDFCVEE  546 (570)
T ss_pred             C--CHHHHHHHHHHH----HhCCCCEEEEEEeCC
Confidence            6  566776655555    456899999999854

>PRK09107 acetolactate synthase 3 catalytic subunit; Validated

Probab=99.67  E-value=1.5e-16  Score=172.53  Aligned_cols=151  Identities=19%  Similarity=0.362  Sum_probs=110.3

Q ss_pred             CCHHHHHHHHhcCCCC-Cc--cCCCCCc------ccc-cCCC--cccCCcccccccchhhHHHHHHHHHHHhhhhhcCCC
Q 013928          157 VPARAVMSELFGKATG-CC--RGQGGSM------HMF-SKEH--NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD  224 (434)
Q Consensus       157 ~~~~~i~~el~g~~~g-~~--~G~ggs~------h~~-~~~~--~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d  224 (434)
                      +.+..++.++....++ .+  ..+.|..      ++. ..+.  ...+++|+||+++|.|+|+++|           .|+
T Consensus       380 l~~~~~~~~l~~~l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~lA-----------~p~  448 (595)
T PRK09107        380 IMPQYAIQRLYELTKGRDTYITTEVGQHQMWAAQFFGFEEPNRWMTSGGLGTMGYGLPAALGVQIA-----------HPD  448 (595)
T ss_pred             cCHHHHHHHHHHhCCCCCeEEEECCcHHHHHHHHhcccCCCCeEEcCCCchhhhhhHHHHHHHHHh-----------CCC
Confidence            5666777777665532 21  2334421      111 1122  2245679999999999999999           789


Q ss_pred             ceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccc-----------c--ccCchhhhccccCCCcEE
Q 013928          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLR-----------A--TSDPQIYKKGPAFGMPGF  291 (434)
Q Consensus       225 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~-----------~--~~~~d~~~~a~a~Gi~~~  291 (434)
                      +.|||++|||+|++.  .++|.||+++++|+++||.||+ +++.....           .  ...+||.+++++||++++
T Consensus       449 r~Vv~i~GDG~f~m~--~~EL~Ta~r~~lpvi~vV~NN~-~y~~i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~  525 (595)
T PRK09107        449 ALVIDIAGDASIQMC--IQEMSTAVQYNLPVKIFILNNQ-YMGMVRQWQQLLHGNRLSHSYTEAMPDFVKLAEAYGAVGI  525 (595)
T ss_pred             CeEEEEEcCchhhcc--HHHHHHHHHhCCCeEEEEEeCC-ccHHHHHHHHHHhCCccccccCCCCCCHHHHHHHCCCeEE
Confidence            999999999999987  7899999999999999998887 44432210           0  124789999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928          292 HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR  327 (434)
Q Consensus       292 ~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R  327 (434)
                      +|+  ++.++.+++++|+    ..++|+|||+.+.+
T Consensus       526 ~v~--~~~el~~al~~a~----~~~~p~lIeV~i~~  555 (595)
T PRK09107        526 RCE--KPGDLDDAIQEMI----DVDKPVIFDCRVAN  555 (595)
T ss_pred             EEC--CHHHHHHHHHHHH----hCCCCEEEEEEecC
Confidence            997  4567777666655    45799999999864

>PRK07092 benzoylformate decarboxylase; Reviewed

Probab=99.67  E-value=3.5e-16  Score=167.44  Aligned_cols=150  Identities=22%  Similarity=0.282  Sum_probs=108.0

Q ss_pred             CCHHHHHHHHhcCCCCCc--cCCCCCc-----cccc---CCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCce
Q 013928          157 VPARAVMSELFGKATGCC--RGQGGSM-----HMFS---KEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHV  226 (434)
Q Consensus       157 ~~~~~i~~el~g~~~g~~--~G~ggs~-----h~~~---~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~  226 (434)
                      +++..++.++....++..  ..+.|+.     +++.   +...+.+.+|+||+++|.|+|+++|           .++++
T Consensus       359 l~~~~~~~~l~~~l~~~~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lp~aiGa~la-----------~p~~~  427 (530)
T PRK07092        359 LSVAFVLQTLAALRPADAIVVEEAPSTRPAMQEHLPMRRQGSFYTMASGGLGYGLPAAVGVALA-----------QPGRR  427 (530)
T ss_pred             cCHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHhcCcCCCCceEccCCCcccchHHHHHHHHHh-----------CCCCe
Confidence            556677777766655432  2233321     1111   1122334468999999999999999           67889


Q ss_pred             EEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCccc----------ccccccCchhhhccccCCCcEEEEeC
Q 013928          227 TLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMS----------HLRATSDPQIYKKGPAFGMPGFHVDG  295 (434)
Q Consensus       227 vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~----------~~~~~~~~d~~~~a~a~Gi~~~~VdG  295 (434)
                      |||++|||+|+++  .++|++|.++++|+++||.||+ |++...          ........|+.+++++||+++++|+.
T Consensus       428 vv~i~GDG~f~~~--~~eL~ta~~~~lp~~~vv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~~G~~~~~v~~  505 (530)
T PRK07092        428 VIGLIGDGSAMYS--IQALWSAAQLKLPVTFVILNNGRYGALRWFAPVFGVRDVPGLDLPGLDFVALARGYGCEAVRVSD  505 (530)
T ss_pred             EEEEEeCchHhhh--HHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHhhCCCCCCCCCCCCCCHHHHHHHCCCeEEEeCC
Confidence            9999999999998  6999999999999988888887 765211          11112357899999999999999985


Q ss_pred             CCHHHHHHHHHHHHHHHHccCCCEEEEEEE
Q 013928          296 MDVLKVREVAKEAIERARRGEGPTLVECET  325 (434)
Q Consensus       296 ~D~~av~~a~~~Al~~ar~~~gP~lIev~t  325 (434)
                        +.++.+    |++.+++.++|+|||+.+
T Consensus       506 --~~~l~~----al~~a~~~~~p~liev~~  529 (530)
T PRK07092        506 --AAELAD----ALARALAADGPVLVEVEV  529 (530)
T ss_pred             --HHHHHH----HHHHHHhCCCCEEEEEEc
Confidence              456655    444555678999999986

>PRK05858 hypothetical protein; Provisional

Probab=99.66  E-value=2.7e-16  Score=168.84  Aligned_cols=151  Identities=21%  Similarity=0.180  Sum_probs=109.8

Q ss_pred             CCHHHHHHHHhcCCCCCc--cCCCCCccc-----c---cCC-CcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCc
Q 013928          157 VPARAVMSELFGKATGCC--RGQGGSMHM-----F---SKE-HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH  225 (434)
Q Consensus       157 ~~~~~i~~el~g~~~g~~--~G~ggs~h~-----~---~~~-~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~  225 (434)
                      +.+..++.++....++..  ..+.|....     +   .+. +...+++|+||+++|.|+|+++|           .+++
T Consensus       358 l~~~~~~~~l~~~l~~~~ivv~d~g~~~~~~~~~~~~~~p~~~~~~~~~gsmG~~lp~aiGa~la-----------~p~r  426 (542)
T PRK05858        358 IHPMRVYGELAPLLDRDAIVIGDGGDFVSYAGRYIDPYRPGCWLDPGPFGCLGTGPGYALAARLA-----------RPSR  426 (542)
T ss_pred             cCHHHHHHHHHHhcCCCeEEEECCcHHHHHHHHHccccCCCCEEeCCCccccccchhHHHHHHHh-----------CCCC
Confidence            566667777666555432  233332111     1   111 12234679999999999999999           6889


Q ss_pred             eEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCccccccc------------ccCchhhhccccCCCcEEEE
Q 013928          226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA------------TSDPQIYKKGPAFGMPGFHV  293 (434)
Q Consensus       226 ~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~------------~~~~d~~~~a~a~Gi~~~~V  293 (434)
                      .|||++|||+|++.  .++|.+|.++++|+++||.||+ +++.....+            .+++||.+++++||+++.+|
T Consensus       427 ~vv~i~GDG~f~~~--~~eL~Ta~~~~lpi~ivV~NN~-~y~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v  503 (542)
T PRK05858        427 QVVLLQGDGAFGFS--LMDVDTLVRHNLPVVSVIGNNG-IWGLEKHPMEALYGYDVAADLRPGTRYDEVVRALGGHGELV  503 (542)
T ss_pred             cEEEEEcCchhcCc--HHHHHHHHHcCCCEEEEEEeCC-chhhHHHHHHHhcCCccccccCCCCCHHHHHHHCCCeEEEe
Confidence            99999999999987  7899999999999888888875 343322111            13579999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928          294 DGMDVLKVREVAKEAIERARRGEGPTLVECETYR  327 (434)
Q Consensus       294 dG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R  327 (434)
                      +.  +.++.+++++|+    +.++|+|||+.+.+
T Consensus       504 ~~--~~eL~~al~~a~----~~~~p~lIev~~~~  531 (542)
T PRK05858        504 TV--PAELGPALERAF----ASGVPYLVNVLTDP  531 (542)
T ss_pred             CC--HHHHHHHHHHHH----hCCCcEEEEEEECC
Confidence            84  557777666665    46899999999854

>TIGR02418 acolac_catab acetolactate synthase, catabolic

Probab=99.66  E-value=3.8e-16  Score=167.40  Aligned_cols=118  Identities=24%  Similarity=0.310  Sum_probs=94.8

Q ss_pred             cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccc
Q 013928          191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH  270 (434)
Q Consensus       191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~  270 (434)
                      ..++++||+++|.|+|+++|           .+++.|||++|||+|++.  .++|.||.++++|+++||.||+ +++...
T Consensus       404 ~~~~g~mG~~lpaaiGa~la-----------~~~~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpi~ivV~NN~-~y~~~~  469 (539)
T TIGR02418       404 SNGMQTLGVALPWAIGAALV-----------RPNTKVVSVSGDGGFLFS--SMELETAVRLKLNIVHIIWNDN-GYNMVE  469 (539)
T ss_pred             CCCccccccHHHHHHHHHHh-----------CCCCcEEEEEcchhhhch--HHHHHHHHHhCCCeEEEEEECC-cchHHH
Confidence            45679999999999999999           678899999999999987  7899999999999888888775 333221


Q ss_pred             cc-----------cccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecC
Q 013928          271 LR-----------ATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF  328 (434)
Q Consensus       271 ~~-----------~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~  328 (434)
                      ..           ....+|+.+++++||+++.+|+.  +.++.+++++|+    +.++|+|||+.+.+.
T Consensus       470 ~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~~--~~eL~~al~~a~----~~~~p~lIev~v~~~  532 (539)
T TIGR02418       470 FQEEMKYQRSSGVDFGPIDFVKYAESFGAKGLRVES--PDQLEPTLRQAM----EVEGPVVVDIPVDYS  532 (539)
T ss_pred             HHHHHhcCCcccccCCCCCHHHHHHHCCCeEEEECC--HHHHHHHHHHHH----hCCCCEEEEEEecCc
Confidence            10           11357999999999999999985  557777666554    467999999998643

Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.

>PRK08979 acetolactate synthase 3 catalytic subunit; Validated

Probab=99.66  E-value=2.1e-16  Score=170.71  Aligned_cols=152  Identities=21%  Similarity=0.351  Sum_probs=110.1

Q ss_pred             CCHHHHHHHHhcCCCCCc--cCCCCCc-----ccc--cCCCc--ccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCc
Q 013928          157 VPARAVMSELFGKATGCC--RGQGGSM-----HMF--SKEHN--LLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH  225 (434)
Q Consensus       157 ~~~~~i~~el~g~~~g~~--~G~ggs~-----h~~--~~~~~--~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~  225 (434)
                      +++..++.++....++..  ..+.|..     +++  ..+..  ..+++|+||+++|+|+|+++|           .|++
T Consensus       372 i~~~~~~~~l~~~l~~d~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la-----------~p~~  440 (572)
T PRK08979        372 IKPQQVIETLYKLTNGDAYVASDVGQHQMFAALYYPFDKPRRWINSGGLGTMGFGLPAAMGVKFA-----------MPDE  440 (572)
T ss_pred             cCHHHHHHHHHHhcCCCeEEEECCcHHHHHHHHhcCcCCCCeEEccCCcccccchhhHHHhhhhh-----------CCCC
Confidence            567777777777655432  2333321     111  11222  245679999999999999999           7889


Q ss_pred             eEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCccccccc-------------ccCchhhhccccCCCcEEE
Q 013928          226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA-------------TSDPQIYKKGPAFGMPGFH  292 (434)
Q Consensus       226 ~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~-------------~~~~d~~~~a~a~Gi~~~~  292 (434)
                      .|||++|||+|++.  .++|.||.++++|+++||.||+ +++.....|             ...+||.+++++||+++.+
T Consensus       441 ~vv~i~GDG~f~m~--~~EL~Ta~r~~lpv~~vV~NN~-~y~~i~~~q~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~  517 (572)
T PRK08979        441 TVVCVTGDGSIQMN--IQELSTALQYDIPVKIINLNNR-FLGMVKQWQDMIYQGRHSHSYMDSVPDFAKIAEAYGHVGIR  517 (572)
T ss_pred             eEEEEEcchHhhcc--HHHHHHHHHcCCCeEEEEEeCC-ccHHHHHHHHHHhCCcccccCCCCCCCHHHHHHHCCCeEEE
Confidence            99999999999997  7899999999999888888876 333322110             1247899999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928          293 VDGMDVLKVREVAKEAIERARRGEGPTLVECETYR  327 (434)
Q Consensus       293 VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R  327 (434)
                      |+.  +.++..++++|++   ..++|+|||+.+.+
T Consensus       518 v~~--~~eL~~al~~a~~---~~~~p~lIev~i~~  547 (572)
T PRK08979        518 ISD--PDELESGLEKALA---MKDRLVFVDINVDE  547 (572)
T ss_pred             ECC--HHHHHHHHHHHHh---cCCCcEEEEEEeCC
Confidence            984  5677776666553   13789999999864

>PRK06965 acetolactate synthase 3 catalytic subunit; Validated

Probab=99.66  E-value=3.3e-16  Score=169.71  Aligned_cols=152  Identities=19%  Similarity=0.348  Sum_probs=110.5

Q ss_pred             CCHHHHHHHHhcCCCCCc--cCCCCCc-----ccc--cCCC--cccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCc
Q 013928          157 VPARAVMSELFGKATGCC--RGQGGSM-----HMF--SKEH--NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH  225 (434)
Q Consensus       157 ~~~~~i~~el~g~~~g~~--~G~ggs~-----h~~--~~~~--~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~  225 (434)
                      +.+..++.++....++.+  ..++|..     +++  ..+.  ...+++|+||+++|.|+|+++|           .+++
T Consensus       388 i~~~~~~~~l~~~l~~d~ii~~d~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~lA-----------~p~r  456 (587)
T PRK06965        388 IKPQYVVEKLWELTDGDAFVCSDVGQHQMWAAQFYRFNEPRRWINSGGLGTMGVGLPYAMGIKMA-----------HPDD  456 (587)
T ss_pred             cCHHHHHHHHHhhCCCCeEEEeCCcHHHHHHHHhcccCCCCeEEcCCCcccccchHHHHHHHHHh-----------CCCC
Confidence            566677777766554432  1233321     111  1122  2246779999999999999999           6889


Q ss_pred             eEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCccccccc-------------ccCchhhhccccCCCcEEE
Q 013928          226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA-------------TSDPQIYKKGPAFGMPGFH  292 (434)
Q Consensus       226 ~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~-------------~~~~d~~~~a~a~Gi~~~~  292 (434)
                      .|||++|||+|++.  .++|.||.++++|+++||.||+ +++.....|             ...+|+.+++++||+++.+
T Consensus       457 ~Vv~i~GDGsf~m~--~~eL~Ta~r~~lpviivV~NN~-~~~~i~~~q~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~  533 (587)
T PRK06965        457 DVVCITGEGSIQMC--IQELSTCLQYDTPVKIISLNNR-YLGMVRQWQEIEYSKRYSHSYMDALPDFVKLAEAYGHVGMR  533 (587)
T ss_pred             cEEEEEcchhhhcC--HHHHHHHHHcCCCeEEEEEECC-cchHHHHHHHHhcCCCccccCCCCCCCHHHHHHHCCCEEEE
Confidence            99999999999997  7999999999999988888887 443322110             1247999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928          293 VDGMDVLKVREVAKEAIERARRGEGPTLVECETYR  327 (434)
Q Consensus       293 VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R  327 (434)
                      |+  +..++.+++++|++.   .++|+|||+.+.+
T Consensus       534 v~--~~~eL~~al~~a~~~---~~~p~lieV~i~~  563 (587)
T PRK06965        534 IE--KTSDVEPALREALRL---KDRTVFLDFQTDP  563 (587)
T ss_pred             EC--CHHHHHHHHHHHHhc---CCCcEEEEEEecc
Confidence            97  456887777776641   3689999999854

>PRK08327 acetolactate synthase catalytic subunit; Validated

Probab=99.66  E-value=3.8e-16  Score=168.62  Aligned_cols=122  Identities=25%  Similarity=0.307  Sum_probs=101.8

Q ss_pred             cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcC-CccCccc
Q 013928          191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN-LWAIGMS  269 (434)
Q Consensus       191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN-~y~is~~  269 (434)
                      .+++|+||+++|.|+|+++|           .|+++|||++|||+|+++...++|++|.++++|+++||.|| +|++...
T Consensus       426 ~~~~gsmG~~lp~aiGa~la-----------~p~~~vv~i~GDG~f~~~~~e~~l~ta~~~~l~~~ivv~NN~~yg~~~~  494 (569)
T PRK08327        426 DGSAGGLGWALGAALGAKLA-----------TPDRLVIATVGDGSFIFGVPEAAHWVAERYGLPVLVVVFNNGGWLAVKE  494 (569)
T ss_pred             CCCCCCCCcchHHHHHHhhc-----------CCCCeEEEEecCcceeecCcHHHHHHHHHhCCCEEEEEEeCcccccchh
Confidence            45689999999999999999           78999999999999998854567999999999988888888 5665311


Q ss_pred             c-----------------cccc-cCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEE
Q 013928          270 H-----------------LRAT-SDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECET  325 (434)
Q Consensus       270 ~-----------------~~~~-~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t  325 (434)
                      .                 .... +.+|+.+++++||+++.+|+  ++.++.+++++|++.++.+++|+|||+.+
T Consensus       495 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~gp~liev~v  566 (569)
T PRK08327        495 AVLEVYPEGYAARKGTFPGTDFDPRPDFAKIAEAFGGYGERVE--DPEELKGALRRALAAVRKGRRSAVLDVIV  566 (569)
T ss_pred             HHhhhCcccccccccccccccCCCCCCHHHHHHhCCCCceEeC--CHHHHHHHHHHHHHHHhcCCCcEEEEEEc
Confidence            0                 0011 35689999999999999998  77899999999998777778999999986

>PRK08527 acetolactate synthase 3 catalytic subunit; Validated

Probab=99.65  E-value=4.9e-16  Score=167.48  Aligned_cols=153  Identities=24%  Similarity=0.384  Sum_probs=109.5

Q ss_pred             CCHHHHHHHHhcCCCCCc--cCCCCCc-----cccc--CCC--cccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCc
Q 013928          157 VPARAVMSELFGKATGCC--RGQGGSM-----HMFS--KEH--NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH  225 (434)
Q Consensus       157 ~~~~~i~~el~g~~~g~~--~G~ggs~-----h~~~--~~~--~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~  225 (434)
                      +.+..++.++....++.+  ..+.|..     +++.  .+.  ...+++|+||+++|.|+|+++|           .+++
T Consensus       365 i~~~~~~~~l~~~l~~d~iv~~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~aiGa~la-----------~p~~  433 (563)
T PRK08527        365 LKPQWVIERVGELLGDDAIISTDVGQHQMWVAQFYPFNYPRQLATSGGLGTMGYGLPAALGAKLA-----------VPDK  433 (563)
T ss_pred             cCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHhcccCCCCeEEcCCCcccccchHHHHHHHHHh-----------CCCC
Confidence            455667777766655432  2333421     1111  112  2245679999999999999999           6788


Q ss_pred             eEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccc-------------cccCchhhhccccCCCcEEE
Q 013928          226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLR-------------ATSDPQIYKKGPAFGMPGFH  292 (434)
Q Consensus       226 ~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~-------------~~~~~d~~~~a~a~Gi~~~~  292 (434)
                      .|||++|||+|+++  ..+|.+|.+++||+++||.||+ +++.....             ....+|+.+++++||+++++
T Consensus       434 ~vv~i~GDG~f~m~--~~eL~Ta~~~~lpvi~vV~NN~-~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~  510 (563)
T PRK08527        434 VVINFTGDGSILMN--IQELMTAVEYKIPVINIILNNN-FLGMVRQWQTFFYEERYSETDLSTQPDFVKLAESFGGIGFR  510 (563)
T ss_pred             cEEEEecCchhccc--HHHHHHHHHhCCCeEEEEEECC-cchhHHHHHHhhcCCceeeccCCCCCCHHHHHHHCCCeEEE
Confidence            99999999999987  6789999999999888888876 33322111             01246899999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCC
Q 013928          293 VDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR  329 (434)
Q Consensus       293 VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~  329 (434)
                      |+.  +.++.+++++|+    ..++|+|||+.+.+..
T Consensus       511 v~~--~~el~~al~~a~----~~~~p~lieV~v~~~~  541 (563)
T PRK08527        511 VTT--KEEFDKALKEAL----ESDKVALIDVKIDRFE  541 (563)
T ss_pred             ECC--HHHHHHHHHHHH----hCCCCEEEEEEECCcc
Confidence            974  557766665554    4689999999997633

>PRK06546 pyruvate dehydrogenase; Provisional

Probab=99.65  E-value=5.5e-16  Score=167.65  Aligned_cols=118  Identities=27%  Similarity=0.344  Sum_probs=96.1

Q ss_pred             cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccc
Q 013928          191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH  270 (434)
Q Consensus       191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~  270 (434)
                      .+.+|+||+++|.|+|+++|           .++++|||++|||+|+++  ..+|.+|+++++|+++||.||+ +++...
T Consensus       404 s~~~gsmG~~~paAiGa~la-----------~p~~~vv~i~GDGsf~~~--~~el~Ta~~~~lpv~~vV~NN~-~~g~i~  469 (578)
T PRK06546        404 SFRHGSMANALPHAIGAQLA-----------DPGRQVISMSGDGGLSML--LGELLTVKLYDLPVKVVVFNNS-TLGMVK  469 (578)
T ss_pred             cCCcccccchhHHHHHHHHh-----------CCCCcEEEEEcCchHhhh--HHHHHHHHHhCCCeEEEEEECC-ccccHH
Confidence            35679999999999999999           788999999999999986  6899999999999999988886 333321


Q ss_pred             c-----------ccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecC
Q 013928          271 L-----------RATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF  328 (434)
Q Consensus       271 ~-----------~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~  328 (434)
                      .           .....+|+.+++++||+++.+|+  ++.++.+++++++    +.++|+|||+.+.+.
T Consensus       470 ~~q~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v~--~~~el~~al~~a~----~~~gp~lIev~~~~~  532 (578)
T PRK06546        470 LEMLVDGLPDFGTDHPPVDYAAIAAALGIHAVRVE--DPKDVRGALREAF----AHPGPALVDVVTDPN  532 (578)
T ss_pred             HHHHhcCCCcccccCCCCCHHHHHHHCCCeeEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEeCCC
Confidence            0           01235799999999999999997  5678877666655    468999999998543

>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family

Probab=99.65  E-value=4e-16  Score=167.36  Aligned_cols=151  Identities=15%  Similarity=0.100  Sum_probs=107.9

Q ss_pred             CCHHHHHHHHhcCCCCCc--cCCCCCcccc------cCCCc--ccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCce
Q 013928          157 VPARAVMSELFGKATGCC--RGQGGSMHMF------SKEHN--LLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHV  226 (434)
Q Consensus       157 ~~~~~i~~el~g~~~g~~--~G~ggs~h~~------~~~~~--~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~  226 (434)
                      +++..++.++....++.+  ..+.|...+.      ..+..  ..+.+|+||+++|.|+|+++|           .|+++
T Consensus       356 l~~~~~~~~l~~~l~~~~iiv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la-----------~p~~~  424 (539)
T TIGR03393       356 LSQENFWQTLQTFLRPGDIILADQGTSAFGAADLRLPADVNFIVQPLWGSIGYTLPAAFGAQTA-----------CPNRR  424 (539)
T ss_pred             cCHHHHHHHHHHhcCCCCEEEEccCchhhhhhhccCCCCCeEEechhhhhhhhHHHHHHHHHhc-----------CCCCC
Confidence            667777777776555332  2333322111      11112  246679999999999999999           78899


Q ss_pred             EEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCccccc------ccccCchhhhccccCCCc----EEEEeC
Q 013928          227 TLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHL------RATSDPQIYKKGPAFGMP----GFHVDG  295 (434)
Q Consensus       227 vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~~~------~~~~~~d~~~~a~a~Gi~----~~~VdG  295 (434)
                      |||++|||+|++.  .++|.+|+++++|+++||.||+ |++-....      .....+|+.+++++||++    +.+|+.
T Consensus       425 vv~i~GDG~f~m~--~~EL~Ta~~~~lpi~~vV~NN~~y~~i~~~~~~~~~~~~~~~~df~~la~a~G~~~~~~~~~v~~  502 (539)
T TIGR03393       425 VILLIGDGSAQLT--IQELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRYNDIALWNWTHLPQALSLDPQSECWRVSE  502 (539)
T ss_pred             eEEEEcCcHHHhH--HHHHHHHHHcCCCCEEEEEeCCceEEEEeecCCCCCcCcCCCCCHHHHHHHcCCCCccceEEecc
Confidence            9999999999987  7999999999999888887775 54321110      112347899999999996    789874


Q ss_pred             CCHHHHHHHHHHHHHHHHccCCCEEEEEEEe
Q 013928          296 MDVLKVREVAKEAIERARRGEGPTLVECETY  326 (434)
Q Consensus       296 ~D~~av~~a~~~Al~~ar~~~gP~lIev~t~  326 (434)
                        ..++.++++++    .+.++|+|||+.+.
T Consensus       503 --~~el~~al~~a----~~~~~p~liev~i~  527 (539)
T TIGR03393       503 --AEQLADVLEKV----AAHERLSLIEVVLP  527 (539)
T ss_pred             --HHHHHHHHHHH----hccCCeEEEEEEcC
Confidence              55776655554    45689999999874

A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.

>PRK06466 acetolactate synthase 3 catalytic subunit; Validated

Probab=99.64  E-value=5.5e-16  Score=167.50  Aligned_cols=153  Identities=20%  Similarity=0.311  Sum_probs=110.1

Q ss_pred             CCHHHHHHHHhcCCCCCc--cCCCCCcc-----cc--cCC--CcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCc
Q 013928          157 VPARAVMSELFGKATGCC--RGQGGSMH-----MF--SKE--HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH  225 (434)
Q Consensus       157 ~~~~~i~~el~g~~~g~~--~G~ggs~h-----~~--~~~--~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~  225 (434)
                      +++..++.++....++..  ..+.|...     ++  ..+  +...+++|+||+++|.|+|+++|           .+++
T Consensus       374 l~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaAiGa~la-----------~p~r  442 (574)
T PRK06466        374 IKPQQVVETLYEVTNGDAYVTSDVGQHQMFAAQYYKFNKPNRWINSGGLGTMGFGLPAAMGVKLA-----------FPDQ  442 (574)
T ss_pred             cCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHhccccCCCcEEcCCCcchhhchHHHHHHHHHh-----------CCCC
Confidence            567778887777654432  22333211     11  111  22346779999999999999999           6889


Q ss_pred             eEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCcccc---------ccc--ccCchhhhccccCCCcEEEE
Q 013928          226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSH---------LRA--TSDPQIYKKGPAFGMPGFHV  293 (434)
Q Consensus       226 ~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~~---------~~~--~~~~d~~~~a~a~Gi~~~~V  293 (434)
                      .|||++|||+|++.  .++|.+|.++++|+++||.||+ |++-...         ...  ...+||.+++++||+++.+|
T Consensus       443 ~Vv~i~GDG~f~m~--~~eL~Ta~r~~lpv~ivV~NN~~y~~i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v  520 (574)
T PRK06466        443 DVACVTGEGSIQMN--IQELSTCLQYGLPVKIINLNNGALGMVRQWQDMQYEGRHSHSYMESLPDFVKLAEAYGHVGIRI  520 (574)
T ss_pred             eEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHhcCCceeecCCCCCCCHHHHHHHCCCeEEEE
Confidence            99999999999997  7999999999999888888775 4431100         000  12478999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928          294 DGMDVLKVREVAKEAIERARRGEGPTLVECETYR  327 (434)
Q Consensus       294 dG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R  327 (434)
                      +  ++.++..++++|++.   .++|+|||+.+.+
T Consensus       521 ~--~~~el~~al~~a~~~---~~~p~lIev~i~~  549 (574)
T PRK06466        521 T--DLKDLKPKLEEAFAM---KDRLVFIDIYVDR  549 (574)
T ss_pred             C--CHHHHHHHHHHHHhc---CCCcEEEEEEeCC
Confidence            7  456777766666531   2789999999864

>PRK07710 acetolactate synthase catalytic subunit; Reviewed

Probab=99.64  E-value=4e-16  Score=168.43  Aligned_cols=152  Identities=22%  Similarity=0.369  Sum_probs=107.7

Q ss_pred             CCHHHHHHHHhcCCCCCc--cCCCCCc------cccc--CC-CcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCc
Q 013928          157 VPARAVMSELFGKATGCC--RGQGGSM------HMFS--KE-HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH  225 (434)
Q Consensus       157 ~~~~~i~~el~g~~~g~~--~G~ggs~------h~~~--~~-~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~  225 (434)
                      +++..++.++....+...  ..+.|..      ++..  +. ....+++|+||+++|.|+|+++|           .+++
T Consensus       375 ~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaAiGaala-----------~p~~  443 (571)
T PRK07710        375 IKPQKAIEMLYEITKGEAIVTTDVGQHQMWAAQYYPFKTPDKWVTSGGLGTMGFGLPAAIGAQLA-----------KPDE  443 (571)
T ss_pred             cCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHhcccCCCCeEEcCCCcccccchHHHHHHHHHh-----------CCCC
Confidence            566677777766554332  2233321      1111  11 22346679999999999999999           6889


Q ss_pred             eEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCcccc---------c--ccccCchhhhccccCCCcEEEE
Q 013928          226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSH---------L--RATSDPQIYKKGPAFGMPGFHV  293 (434)
Q Consensus       226 ~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~~---------~--~~~~~~d~~~~a~a~Gi~~~~V  293 (434)
                      .|||++|||+|++.  ..+|++|.++++|+++||.||+ |++-...         .  .....+|+.+++++||+++.+|
T Consensus       444 ~vv~i~GDGsf~m~--~~eL~ta~r~~lpi~ivV~NN~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v  521 (571)
T PRK07710        444 TVVAIVGDGGFQMT--LQELSVIKELSLPVKVVILNNEALGMVRQWQEEFYNQRYSHSLLSCQPDFVKLAEAYGIKGVRI  521 (571)
T ss_pred             cEEEEEcchHHhhh--HHHHHHHHHhCCCeEEEEEECchHHHHHHHHHHHhCCcceeccCCCCCCHHHHHHHCCCeEEEE
Confidence            99999999999986  5679999999999888888775 4432110         0  1113478999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928          294 DGMDVLKVREVAKEAIERARRGEGPTLVECETYR  327 (434)
Q Consensus       294 dG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R  327 (434)
                      +..  .++..+++    .+...++|+|||+.+.+
T Consensus       522 ~~~--~el~~al~----~a~~~~~p~lieV~vd~  549 (571)
T PRK07710        522 DDE--LEAKEQLQ----HAIELQEPVVIDCRVLQ  549 (571)
T ss_pred             CCH--HHHHHHHH----HHHhCCCCEEEEEEecC
Confidence            864  46655544    45556899999999965

>PRK08266 hypothetical protein; Provisional

Probab=99.64  E-value=4.7e-16  Score=166.75  Aligned_cols=122  Identities=27%  Similarity=0.339  Sum_probs=97.1

Q ss_pred             cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCccc
Q 013928          191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMS  269 (434)
Q Consensus       191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~  269 (434)
                      .+.+|+||+++|.|+|++++           .+++.|||++|||+|+++  .++|.+|.+++||+++||.||+ |++...
T Consensus       398 ~~~~GsmG~~lp~aiGa~la-----------~p~~~vv~v~GDG~f~~~--~~eL~ta~~~~lpv~ivv~NN~~y~~~~~  464 (542)
T PRK08266        398 CGYQGTLGYGFPTALGAKVA-----------NPDRPVVSITGDGGFMFG--VQELATAVQHNIGVVTVVFNNNAYGNVRR  464 (542)
T ss_pred             CCCCcccccHHHHHHHHHHh-----------CCCCcEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCCcchHHHH
Confidence            34579999999999999998           688999999999999998  7999999999999888888774 654221


Q ss_pred             cc----------ccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCC
Q 013928          270 HL----------RATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGH  331 (434)
Q Consensus       270 ~~----------~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gH  331 (434)
                      .+          .....+|+.+++++||+++.+|+.  +.++.++++++    ...++|+|||+.|+|...+
T Consensus       465 ~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~~--~~el~~al~~a----~~~~~p~liev~i~~~~~~  530 (542)
T PRK08266        465 DQKRRFGGRVVASDLVNPDFVKLAESFGVAAFRVDS--PEELRAALEAA----LAHGGPVLIEVPVPRGSEA  530 (542)
T ss_pred             HHHHhcCCCcccCCCCCCCHHHHHHHcCCeEEEeCC--HHHHHHHHHHH----HhCCCcEEEEEEecCCCCc
Confidence            10          001246899999999999999985  45666655554    4567999999999877544

>PRK08617 acetolactate synthase; Reviewed

Probab=99.64  E-value=5e-16  Score=166.98  Aligned_cols=118  Identities=23%  Similarity=0.294  Sum_probs=95.4

Q ss_pred             cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccc
Q 013928          191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH  270 (434)
Q Consensus       191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~  270 (434)
                      .+++|+||+++|.|+|+++|           .+++.|||++|||+|++.  .++|.+|.++++|+++||.||+ ++++..
T Consensus       410 ~~~~g~mG~~lpaaiGa~la-----------~p~~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~~vV~NN~-~~~~~~  475 (552)
T PRK08617        410 SNGMQTLGVALPWAIAAALV-----------RPGKKVVSVSGDGGFLFS--AMELETAVRLKLNIVHIIWNDG-HYNMVE  475 (552)
T ss_pred             cCccccccccccHHHhhHhh-----------cCCCcEEEEEechHHhhh--HHHHHHHHHhCCCeEEEEEECC-ccchHH
Confidence            45679999999999999999           688999999999999987  7999999999999888888776 444432


Q ss_pred             ccc-----------ccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecC
Q 013928          271 LRA-----------TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF  328 (434)
Q Consensus       271 ~~~-----------~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~  328 (434)
                      ..+           ...+|+.+++++||+++.+|..  +.++.+++++|+    ..++|+|||+.+.+.
T Consensus       476 ~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~--~~eL~~al~~a~----~~~~p~liev~~~~~  538 (552)
T PRK08617        476 FQEEMKYGRSSGVDFGPVDFVKYAESFGAKGLRVTS--PDELEPVLREAL----ATDGPVVIDIPVDYS  538 (552)
T ss_pred             HHHHhhcCCcccCCCCCCCHHHHHHHCCCeEEEECC--HHHHHHHHHHHH----hCCCcEEEEEEeccc
Confidence            110           1357899999999999999984  557767666554    567899999998653

>PRK09124 pyruvate dehydrogenase; Provisional

Probab=99.64  E-value=8.4e-16  Score=166.02  Aligned_cols=118  Identities=22%  Similarity=0.282  Sum_probs=94.7

Q ss_pred             cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCccc
Q 013928          191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMS  269 (434)
Q Consensus       191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~  269 (434)
                      .+++|+||+++|.|+|+++|           .+++.|||++|||+|++.  .++|.+|.++++|+++||.||+ |++...
T Consensus       404 ~~~~G~mG~~lpaAiGa~la-----------~p~r~vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~i~~  470 (574)
T PRK09124        404 SFNHGSMANAMPQALGAQAA-----------HPGRQVVALSGDGGFSML--MGDFLSLVQLKLPVKIVVFNNSVLGFVAM  470 (574)
T ss_pred             cCCcccccchHHHHHHHHHh-----------CCCCeEEEEecCcHHhcc--HHHHHHHHHhCCCeEEEEEeCCccccHHH
Confidence            36789999999999999999           788999999999999987  7899999999999888777775 554210


Q ss_pred             cc-------c--cccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928          270 HL-------R--ATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR  327 (434)
Q Consensus       270 ~~-------~--~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R  327 (434)
                      ..       .  ....+|+.+++++||+++.+|+  ++.++..++++|+    ..++|+|||+.+.+
T Consensus       471 ~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~----~~~~p~lIev~i~~  531 (574)
T PRK09124        471 EMKAGGYLTDGTDLHNPDFAAIAEACGITGIRVE--KASELDGALQRAF----AHDGPALVDVVTAK  531 (574)
T ss_pred             HHHhcCCccccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEecC
Confidence            00       0  1134689999999999999997  4567777666654    46799999999854

>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria

Probab=99.64  E-value=8.6e-16  Score=148.40  Aligned_cols=124  Identities=21%  Similarity=0.177  Sum_probs=96.1

Q ss_pred             cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCcccc-ccchHHHHHHHHHHcCCCeEEEEEcCC-ccCcc
Q 013928          191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTC-NNGQFFECLNMAALWKLPIVFVVENNL-WAIGM  268 (434)
Q Consensus       191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~-~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~  268 (434)
                      .+..++||+++|.|+|++++           .|+++|||++|||++ +++  .++|.+|+++++|+++||.||+ |++..
T Consensus        58 ~~~~gsmG~GlpaAiGa~~a-----------~p~r~VV~i~GDG~~~~m~--~~eL~ta~~~~~pv~~vVlNN~~yg~tg  124 (235)
T cd03376          58 FENAAAVASGIEAALKALGR-----------GKDITVVAFAGDGGTADIG--FQALSGAAERGHDILYICYDNEAYMNTG  124 (235)
T ss_pred             hcCHHHHHHHHHHHHHHhcc-----------CCCCeEEEEEcCchHHhhH--HHHHHHHHHcCCCeEEEEECCcccccCC
Confidence            34457999999999999887           688999999999995 787  7899999999999999999886 44211


Q ss_pred             c-ccc--------------------cccCchhhhccccCCCcEEE-EeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEe
Q 013928          269 S-HLR--------------------ATSDPQIYKKGPAFGMPGFH-VDGMDVLKVREVAKEAIERARRGEGPTLVECETY  326 (434)
Q Consensus       269 ~-~~~--------------------~~~~~d~~~~a~a~Gi~~~~-VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~  326 (434)
                      . ...                    ....+|+.+++++||++++. ++-.++.++.+++++|+    +.++|+|||+.+.
T Consensus       125 ~q~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~a~----~~~gP~lIev~~~  200 (235)
T cd03376         125 IQRSGSTPYGAWTTTTPVGKVSFGKKQPKKDLPLIMAAHNIPYVATASVAYPEDLYKKVKKAL----SIEGPAYIHILSP  200 (235)
T ss_pred             CCCCCCCCCCCEeecCCCCccccccccccCCHHHHHHHcCCcEEEEEcCCCHHHHHHHHHHHH----hCCCCEEEEEECC
Confidence            1 000                    11336899999999999873 55668888888777665    4579999999875


Q ss_pred             cCCCC
Q 013928          327 RFRGH  331 (434)
Q Consensus       327 R~~gH  331 (434)
                      -...|
T Consensus       201 C~~~~  205 (235)
T cd03376         201 CPTGW  205 (235)
T ss_pred             CCCCC
Confidence            54443

PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.

>PRK08273 thiamine pyrophosphate protein; Provisional

Probab=99.64  E-value=5.7e-16  Score=168.15  Aligned_cols=155  Identities=23%  Similarity=0.282  Sum_probs=110.5

Q ss_pred             CCCHHHHHHHHhcCCCCCc--cCCCCCccc-----cc---C-CCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCC
Q 013928          156 GVPARAVMSELFGKATGCC--RGQGGSMHM-----FS---K-EHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD  224 (434)
Q Consensus       156 G~~~~~i~~el~g~~~g~~--~G~ggs~h~-----~~---~-~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d  224 (434)
                      ++++..++.++....+..+  ..+.|....     +.   + .....+++|+||+++|.|+|+++|           .|+
T Consensus       365 ~l~p~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~s~~~g~mG~glpaaiGa~la-----------~p~  433 (597)
T PRK08273        365 PVNPQRVFWELSPRLPDNAILTADSGSCANWYARDLRMRRGMMASLSGTLATMGPAVPYAIAAKFA-----------HPD  433 (597)
T ss_pred             CcCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHhCCCCCCCeEEecCccccccchHHHHHHHHHh-----------CCC
Confidence            3677778887776555332  233343211     11   1 122346679999999999999999           688


Q ss_pred             ceEEEEeCccccccchHHHHHHHHHHc-----CCCeEEEEEcCC-ccCcccc---------c---ccccCchhhhccccC
Q 013928          225 HVTLAFFGDGTCNNGQFFECLNMAALW-----KLPIVFVVENNL-WAIGMSH---------L---RATSDPQIYKKGPAF  286 (434)
Q Consensus       225 ~~vv~~~GDGa~~~G~~~EaLn~A~~~-----~LPvI~VV~NN~-y~is~~~---------~---~~~~~~d~~~~a~a~  286 (434)
                      +.|||++|||+|++.. .++|.||.++     ++|+++||.||+ |++-...         .   ...+..|+.+++++|
T Consensus       434 ~~Vv~i~GDG~f~m~~-~~EL~Ta~r~~~~~~~lpviivV~NN~~~~~i~~~q~~~~~~~~~~~~~~~~~~d~~~lA~a~  512 (597)
T PRK08273        434 RPVIALVGDGAMQMNG-MAELITVAKYWRQWSDPRLIVLVLNNRDLNQVTWEQRVMEGDPKFEASQDLPDVPYARFAELL  512 (597)
T ss_pred             CcEEEEEcchhHhccc-hHHHHHHHHHhhcccCCCEEEEEEeCCcchHHHHHHHHhcCCCcccccccCCCCCHHHHHHHC
Confidence            9999999999998752 3899999999     899988888886 4331100         0   011346899999999


Q ss_pred             CCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecC
Q 013928          287 GMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF  328 (434)
Q Consensus       287 Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~  328 (434)
                      |+++++|+  +++++..++++|+    +.++|+|||+.+.+.
T Consensus       513 G~~~~~v~--~~~eL~~al~~a~----~~~~p~lIeV~~~~~  548 (597)
T PRK08273        513 GLKGIRVD--DPEQLGAAWDEAL----AADRPVVLEVKTDPN  548 (597)
T ss_pred             CCEEEEEC--CHHHHHHHHHHHH----hCCCCEEEEEEeCCC
Confidence            99999998  4567777666654    468999999998653

>TIGR02720 pyruv_oxi_spxB pyruvate oxidase

Probab=99.64  E-value=1e-15  Score=165.56  Aligned_cols=120  Identities=22%  Similarity=0.318  Sum_probs=95.9

Q ss_pred             cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCccc
Q 013928          191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMS  269 (434)
Q Consensus       191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~  269 (434)
                      .+.+|+||+++|.|+|+++|           .++++||+++|||+|++.  .++|.+++++++|+++||.||+ |++...
T Consensus       404 ~~~~gsmG~glpaAiGa~la-----------~p~r~Vv~i~GDGsf~m~--~~eL~Tavr~~lpi~~VV~NN~~yg~i~~  470 (575)
T TIGR02720       404 SNLFATMGVGVPGAIAAKLN-----------YPDRQVFNLAGDGAFSMT--MQDLLTQVQYHLPVINIVFSNCTYGFIKD  470 (575)
T ss_pred             CCCcchhhchHHHHHHHHHh-----------CCCCcEEEEEcccHHHhh--HHHHHHHHHhCCCeEEEEEeCCccHHHHH
Confidence            45679999999999999999           788999999999999997  7899999999999888877665 554210


Q ss_pred             c-----c----ccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928          270 H-----L----RATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR  327 (434)
Q Consensus       270 ~-----~----~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R  327 (434)
                      .     .    .....+|+.+++++||+++.+|+.  ..++.++++++++ . ..++|+|||+.+..
T Consensus       471 ~~~~~~~~~~~~~~~~~df~~iA~a~G~~~~~v~~--~~el~~al~~a~~-~-~~~~p~liev~i~~  533 (575)
T TIGR02720       471 EQEDTNQPLIGVDFNDADFAKIAEGVGAVGFRVNK--IEQLPAVFEQAKA-I-KQGKPVLIDAKITG  533 (575)
T ss_pred             HHHHhCCCcccccCCCCCHHHHHHHCCCEEEEeCC--HHHHHHHHHHHHh-h-CCCCcEEEEEEeCC
Confidence            0     0    011347899999999999999974  5688777777664 2 45799999999854

Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.

>CHL00099 ilvB acetohydroxyacid synthase large subunit

Probab=99.64  E-value=7.3e-16  Score=166.91  Aligned_cols=152  Identities=22%  Similarity=0.407  Sum_probs=109.4

Q ss_pred             CCCHHHHHHHHhcCCCCC-ccCCCCCc-----ccc--cCC-CcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCce
Q 013928          156 GVPARAVMSELFGKATGC-CRGQGGSM-----HMF--SKE-HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHV  226 (434)
Q Consensus       156 G~~~~~i~~el~g~~~g~-~~G~ggs~-----h~~--~~~-~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~  226 (434)
                      ++++..++.++....++. ...++|..     +++  .+. ....+++|+||+++|.|+|+++|           .++++
T Consensus       382 ~l~~~~~~~~l~~~~~d~iv~~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGaala-----------~p~~~  450 (585)
T CHL00099        382 SLSPQEVINEISQLAPDAYFTTDVGQHQMWAAQFLKCKPRKWLSSAGLGTMGYGLPAAIGAQIA-----------HPNEL  450 (585)
T ss_pred             CcCHHHHHHHHHhhCCCeEEEECCcHHHHHHHHhccCCCCcEEcCccccchhhhHHHHHHHHHh-----------CCCCe
Confidence            366677777776654422 12333321     111  111 22246789999999999999999           67899


Q ss_pred             EEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccc--------------cccCchhhhccccCCCcEEE
Q 013928          227 TLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLR--------------ATSDPQIYKKGPAFGMPGFH  292 (434)
Q Consensus       227 vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~--------------~~~~~d~~~~a~a~Gi~~~~  292 (434)
                      |||++|||+|++.  .++|.+|.++++|+++||.||+ +++.....              ....+|+.+++++||+++++
T Consensus       451 vv~i~GDG~f~m~--~~eL~Ta~~~~l~~~~vV~NN~-~y~~i~~~q~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~  527 (585)
T CHL00099        451 VICISGDASFQMN--LQELGTIAQYNLPIKIIIINNK-WQGMVRQWQQAFYGERYSHSNMEEGAPDFVKLAEAYGIKGLR  527 (585)
T ss_pred             EEEEEcchhhhhh--HHHHHHHHHhCCCeEEEEEECC-cchHHHHHHHHhcCCCcccccCCCCCCCHHHHHHHCCCeEEE
Confidence            9999999999987  7999999999999999998887 33322111              11247899999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928          293 VDGMDVLKVREVAKEAIERARRGEGPTLVECETYR  327 (434)
Q Consensus       293 VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R  327 (434)
                      |+.  ++++.+++++|    +..++|+|||+.+..
T Consensus       528 v~~--~~el~~al~~a----~~~~~p~liev~v~~  556 (585)
T CHL00099        528 IKS--RKDLKSSLKEA----LDYDGPVLIDCQVIE  556 (585)
T ss_pred             eCC--HHHHHHHHHHH----HhCCCCEEEEEEECC
Confidence            975  55766655554    456899999999853

>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed

Probab=99.64  E-value=6.8e-16  Score=166.33  Aligned_cols=151  Identities=21%  Similarity=0.359  Sum_probs=108.5

Q ss_pred             CCHHHHHHHHhcCCCCCc-cCCCCCc-----cccc--CCCc--ccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCce
Q 013928          157 VPARAVMSELFGKATGCC-RGQGGSM-----HMFS--KEHN--LLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHV  226 (434)
Q Consensus       157 ~~~~~i~~el~g~~~g~~-~G~ggs~-----h~~~--~~~~--~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~  226 (434)
                      +.+..++.++....++.. ..+.|..     +++.  .+..  ..+++|+||+++|.|+|+++|           .+++.
T Consensus       366 l~~~~~~~~l~~~~p~~iiv~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la-----------~p~~~  434 (561)
T PRK06048        366 IKPQYVIEQIYELCPDAIIVTEVGQHQMWAAQYFKYKYPRTFITSGGLGTMGYGFPAAIGAKVG-----------KPDKT  434 (561)
T ss_pred             cCHHHHHHHHHhhCCCcEEEEcCcHHHHHHHHhcccCCCCeEEeCCCccccccHHHHHHHHHHh-----------CCCCc
Confidence            456667777766554321 2333321     1111  1122  245669999999999999999           67899


Q ss_pred             EEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCccccc-----------cc--ccCchhhhccccCCCcEEEE
Q 013928          227 TLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHL-----------RA--TSDPQIYKKGPAFGMPGFHV  293 (434)
Q Consensus       227 vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~-----------~~--~~~~d~~~~a~a~Gi~~~~V  293 (434)
                      |||++|||+|++.  ..+|.+|.++++|+++||.||+ +++....           ..  ...+|+.+++++||+++.+|
T Consensus       435 Vv~i~GDG~f~m~--~~eL~Ta~~~~l~i~~vV~NN~-~y~~i~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v  511 (561)
T PRK06048        435 VIDIAGDGSFQMN--SQELATAVQNDIPVIVAILNNG-YLGMVRQWQELFYDKRYSHTCIKGSVDFVKLAEAYGALGLRV  511 (561)
T ss_pred             EEEEEeCchhhcc--HHHHHHHHHcCCCeEEEEEECC-ccHHHHHHHHHHcCCcccccCCCCCCCHHHHHHHCCCeEEEE
Confidence            9999999999997  7999999999999888888776 3332211           01  13578999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928          294 DGMDVLKVREVAKEAIERARRGEGPTLVECETYR  327 (434)
Q Consensus       294 dG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R  327 (434)
                      +.  +.++.+++++|+    ..++|+|||+.+.+
T Consensus       512 ~t--~~el~~al~~a~----~~~~p~liev~~~~  539 (561)
T PRK06048        512 EK--PSEVRPAIEEAV----ASDRPVVIDFIVEC  539 (561)
T ss_pred             CC--HHHHHHHHHHHH----hCCCCEEEEEEecC
Confidence            85  457767666654    46799999999864

>PRK07064 hypothetical protein; Provisional

Probab=99.63  E-value=7.7e-16  Score=165.15  Aligned_cols=118  Identities=25%  Similarity=0.320  Sum_probs=93.9

Q ss_pred             ccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCcc
Q 013928          190 LLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGM  268 (434)
Q Consensus       190 ~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~  268 (434)
                      +.+..|+||+++|.|+|+++|           .+++.|||++|||+|++.  .++|.+|.++++|+++||.||+ |++-.
T Consensus       400 ~~~~~g~mG~~lpaAiGa~lA-----------~p~~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~yg~~~  466 (544)
T PRK07064        400 VHALGGGIGQGLAMAIGAALA-----------GPGRKTVGLVGDGGLMLN--LGELATAVQENANMVIVLMNDGGYGVIR  466 (544)
T ss_pred             eccCCCccccccchhhhhhhh-----------CcCCcEEEEEcchHhhhh--HHHHHHHHHhCCCeEEEEEeCChhHHHH
Confidence            444458999999999999999           688999999999999987  7899999999999888887775 54321


Q ss_pred             ccc----------ccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEe
Q 013928          269 SHL----------RATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETY  326 (434)
Q Consensus       269 ~~~----------~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~  326 (434)
                      ...          .....+|+.+++++||+++.+|+.  +.++..++++|+    +.++|+|||+.++
T Consensus       467 ~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~--~~eL~~al~~a~----~~~~p~lIeV~~~  528 (544)
T PRK07064        467 NIQDAQYGGRRYYVELHTPDFALLAASLGLPHWRVTS--ADDFEAVLREAL----AKEGPVLVEVDML  528 (544)
T ss_pred             HHHHHhcCCccccccCCCCCHHHHHHHCCCeEEEeCC--HHHHHHHHHHHH----cCCCCEEEEEEcc
Confidence            100          011357899999999999999974  557777666654    4679999999986

>PRK06112 acetolactate synthase catalytic subunit; Validated

Probab=99.63  E-value=9.7e-16  Score=165.65  Aligned_cols=151  Identities=23%  Similarity=0.313  Sum_probs=107.9

Q ss_pred             CCHHHHHHHHhcCCCCCc--cCCCCCc-----cccc--C-CCcc--cCCcccccccchhhHHHHHHHHHHHhhhhhcCCC
Q 013928          157 VPARAVMSELFGKATGCC--RGQGGSM-----HMFS--K-EHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD  224 (434)
Q Consensus       157 ~~~~~i~~el~g~~~g~~--~G~ggs~-----h~~~--~-~~~~--~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d  224 (434)
                      +.+..++.++....++.+  ..++|..     +++.  + ...+  ..++++||+++|.|+|+++|           .++
T Consensus       387 i~~~~v~~~l~~~l~~~~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~g~gsmG~~l~~aiGa~la-----------~~~  455 (578)
T PRK06112        387 IRPERIMAELQAVLTGDTIVVADASYSSIWVANFLTARRAGMRFLTPRGLAGLGWGVPMAIGAKVA-----------RPG  455 (578)
T ss_pred             cCHHHHHHHHHHhCCCCCEEEEcccHHHHHHHHhcCccCCCceEECCCCccccccHHHHHHHHHhh-----------CCC
Confidence            556667777766655432  1233321     1111  1 2123  34578999999999999998           678


Q ss_pred             ceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCccccccc------------ccCchhhhccccCCCcEEE
Q 013928          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA------------TSDPQIYKKGPAFGMPGFH  292 (434)
Q Consensus       225 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~------------~~~~d~~~~a~a~Gi~~~~  292 (434)
                      ++|||++|||+|++.  .++|++|.++++|+++||.||+ .++.....+            ...+|+.+++++||+++++
T Consensus       456 ~~vv~i~GDGsf~~~--~~el~ta~~~~l~~~~vv~NN~-~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~  532 (578)
T PRK06112        456 APVICLVGDGGFAHV--WAELETARRMGVPVTIVVLNNG-ILGFQKHAETVKFGTHTDACHFAAVDHAAIARACGCDGVR  532 (578)
T ss_pred             CcEEEEEcchHHHhH--HHHHHHHHHhCCCeEEEEEeCC-ccCCEEeccccccCCccccCcCCCCCHHHHHHHCCCeEEE
Confidence            899999999999875  8999999999999999998886 222221100            1246899999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928          293 VDGMDVLKVREVAKEAIERARRGEGPTLVECETYR  327 (434)
Q Consensus       293 VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R  327 (434)
                      |+.  +.++.++++++    .+.++|+|||+++.+
T Consensus       533 v~~--~~el~~al~~a----~~~~gp~lIev~~~~  561 (578)
T PRK06112        533 VED--PAELAQALAAA----MAAPGPTLIEVITDP  561 (578)
T ss_pred             eCC--HHHHHHHHHHH----HhCCCCEEEEEEcCc
Confidence            984  55766655554    456899999999854

>PRK06456 acetolactate synthase catalytic subunit; Reviewed

Probab=99.63  E-value=9.9e-16  Score=165.35  Aligned_cols=153  Identities=20%  Similarity=0.262  Sum_probs=109.2

Q ss_pred             CCHHHHHHHHhcCCCCCc--cCCCCCcc-----cc--cCCC--cccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCc
Q 013928          157 VPARAVMSELFGKATGCC--RGQGGSMH-----MF--SKEH--NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH  225 (434)
Q Consensus       157 ~~~~~i~~el~g~~~g~~--~G~ggs~h-----~~--~~~~--~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~  225 (434)
                      +.+..++.++....++..  ..+.|...     ++  ..+.  ...+++|+||+++|.|+|+++|           .+++
T Consensus       372 i~~~~~~~~l~~~l~~~~ii~~d~g~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGa~la-----------~p~~  440 (572)
T PRK06456        372 LKPWKIMKTIRQALPRDAIVTTGVGQHQMWAEVFWEVLEPRTFLTSSGMGTMGFGLPAAMGAKLA-----------RPDK  440 (572)
T ss_pred             cCHHHHHHHHHHhCCCCEEEEECCcHHHHHHHHhcCcCCCCcEEcCCCcccccchhHHHHHHHHh-----------CCCC
Confidence            566677777766554432  12223211     11  1112  2345679999999999999999           6788


Q ss_pred             eEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCccccc-----------ccccCchhhhccccCCCcEEEE
Q 013928          226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHL-----------RATSDPQIYKKGPAFGMPGFHV  293 (434)
Q Consensus       226 ~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~~~-----------~~~~~~d~~~~a~a~Gi~~~~V  293 (434)
                      .|||++|||+|++.  .++|.||.++++|+++||.||+ |++....+           .....+||.+++++||+++++|
T Consensus       441 ~vv~i~GDG~f~m~--~~eL~Ta~~~~l~i~ivV~NN~~yg~i~~~q~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v  518 (572)
T PRK06456        441 VVVDLDGDGSFLMT--GTNLATAVDEHIPVISVIFDNRTLGLVRQVQDLFFGKRIVGVDYGPSPDFVKLAEAFGALGFNV  518 (572)
T ss_pred             eEEEEEccchHhcc--hHHHHHHHHhCCCeEEEEEECCchHHHHHHHHHhhCCCcccccCCCCCCHHHHHHHCCCeeEEe
Confidence            99999999999987  7899999999999888888886 44321100           0012479999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecC
Q 013928          294 DGMDVLKVREVAKEAIERARRGEGPTLVECETYRF  328 (434)
Q Consensus       294 dG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~  328 (434)
                      +  ++.++.+++++|+    ..++|+|||+.+.+.
T Consensus       519 ~--~~~eL~~al~~a~----~~~~p~lIev~v~~~  547 (572)
T PRK06456        519 T--TYEDIEKSLKSAI----KEDIPAVIRVPVDKE  547 (572)
T ss_pred             C--CHHHHHHHHHHHH----hCCCCEEEEEEeCcc
Confidence            7  4567767665554    568999999999753

>PLN02470 acetolactate synthase

Probab=99.63  E-value=6.9e-16  Score=167.11  Aligned_cols=117  Identities=26%  Similarity=0.378  Sum_probs=94.5

Q ss_pred             cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccc
Q 013928          191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH  270 (434)
Q Consensus       191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~  270 (434)
                      .+++|+||+++|.|+|+++|           .|++.|||++|||+|++.  .++|.+|.++++|+++||.||+ +++...
T Consensus       422 ~~~~g~mG~glpaaiGa~la-----------~p~~~Vv~i~GDG~f~m~--~~eL~Ta~~~~l~v~ivV~NN~-~yg~i~  487 (585)
T PLN02470        422 SGGLGAMGFGLPAAIGAAAA-----------NPDAIVVDIDGDGSFIMN--IQELATIHVENLPVKIMVLNNQ-HLGMVV  487 (585)
T ss_pred             CCccccccchHHHHHHHHHh-----------CCCCcEEEEEccchhhcc--HHHHHHHHHhCCCeEEEEEeCC-cchHHH
Confidence            45679999999999999999           788999999999999997  7999999999999888888886 333221


Q ss_pred             c-----------ccc-c--------CchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928          271 L-----------RAT-S--------DPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR  327 (434)
Q Consensus       271 ~-----------~~~-~--------~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R  327 (434)
                      .           ... .        .+|+.+++++||+++.+|+.  +.++.+++++++    ..++|+|||+.+.+
T Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~v~~--~~el~~al~~a~----~~~~p~lieV~i~~  558 (585)
T PLN02470        488 QWEDRFYKANRAHTYLGDPDAEAEIFPDFLKFAEGCKIPAARVTR--KSDLREAIQKML----DTPGPYLLDVIVPH  558 (585)
T ss_pred             HHHHHHhCCceeeeecCccccccCCCCCHHHHHHHCCCeEEEECC--HHHHHHHHHHHH----hCCCCEEEEEEeCC
Confidence            0           000 0        26999999999999999974  557777666665    45789999999864

>PRK06882 acetolactate synthase 3 catalytic subunit; Validated

Probab=99.63  E-value=9.5e-16  Score=165.55  Aligned_cols=118  Identities=25%  Similarity=0.397  Sum_probs=94.3

Q ss_pred             cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccc
Q 013928          191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH  270 (434)
Q Consensus       191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~  270 (434)
                      .+++|+||+++|.|+|+++|           .++++|||++|||+|++.  .++|.+|.++++|+++||.||+ +++...
T Consensus       417 ~~~~g~mG~~lp~aiGa~la-----------~p~~~vv~i~GDG~f~~~--~~eL~ta~~~~lpv~~vV~NN~-~~~~i~  482 (574)
T PRK06882        417 SGGAGTMGFGLPAAIGVKFA-----------HPEATVVCVTGDGSIQMN--IQELSTAKQYDIPVVIVSLNNR-FLGMVK  482 (574)
T ss_pred             CCCcccccchhHHHHHHHhh-----------cCCCcEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEECc-hhHHHH
Confidence            45679999999999999999           678899999999999997  6999999999999988888886 333211


Q ss_pred             c-------------ccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928          271 L-------------RATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR  327 (434)
Q Consensus       271 ~-------------~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R  327 (434)
                      .             .....+|+.+++++||+++++|+.  ..++..++++|++.   .++|+|||+.+.+
T Consensus       483 ~~q~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~~--~~eL~~al~~a~~~---~~~p~liev~i~~  547 (574)
T PRK06882        483 QWQDLIYSGRHSQVYMNSLPDFAKLAEAYGHVGIQIDT--PDELEEKLTQAFSI---KDKLVFVDVNVDE  547 (574)
T ss_pred             HHHHHhcCCcccccCCCCCCCHHHHHHHCCCeEEEeCC--HHHHHHHHHHHHhc---CCCcEEEEEEecC
Confidence            0             001246899999999999999985  45777766665531   3789999999865

>PRK08155 acetolactate synthase catalytic subunit; Validated

Probab=99.63  E-value=1.1e-15  Score=164.87  Aligned_cols=118  Identities=23%  Similarity=0.368  Sum_probs=94.5

Q ss_pred             cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCccc
Q 013928          191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMS  269 (434)
Q Consensus       191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~  269 (434)
                      .+++|+||+++|.|+|+++|           .++++|||++|||+|+++  ..+|.+|.++++|+++||.||+ |++...
T Consensus       415 ~~~~g~mG~~lpaaiGa~la-----------~~~~~vv~i~GDGsf~~~--~~eL~ta~~~~lpvi~vV~NN~~~g~~~~  481 (564)
T PRK08155        415 SGGLGTMGFGLPAAIGAALA-----------NPERKVLCFSGDGSLMMN--IQEMATAAENQLDVKIILMNNEALGLVHQ  481 (564)
T ss_pred             CCCcccccchhHHHHHHHHh-----------CCCCcEEEEEccchhhcc--HHHHHHHHHhCCCeEEEEEeCCcccccHH
Confidence            45679999999999999999           678899999999999987  6779999999999988888886 555321


Q ss_pred             cc----------cc-ccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928          270 HL----------RA-TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR  327 (434)
Q Consensus       270 ~~----------~~-~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R  327 (434)
                      .+          .. ...+|+.+++++||+++++|+.  ++++..++++|+    ..++|+|||+.+.+
T Consensus       482 ~q~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~--~~el~~al~~a~----~~~~p~lIeV~~~~  544 (564)
T PRK08155        482 QQSLFYGQRVFAATYPGKINFMQIAAGFGLETCDLNN--EADPQAALQEAI----NRPGPALIHVRIDA  544 (564)
T ss_pred             HHHHhcCCCeeeccCCCCCCHHHHHHHCCCeEEEeCC--HHHHHHHHHHHH----hCCCCEEEEEEeCC
Confidence            10          01 1347899999999999999985  457766555554    46799999999854

>PRK06457 pyruvate dehydrogenase; Provisional

Probab=99.63  E-value=8.1e-16  Score=165.35  Aligned_cols=117  Identities=23%  Similarity=0.432  Sum_probs=94.4

Q ss_pred             cCCcccccccchhhHHHHHHHHHHHhhhhhcCC-CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCccc
Q 013928          191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADC-DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMS  269 (434)
Q Consensus       191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~-d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~  269 (434)
                      .+++|+||+++|.|+|+++|           .+ +++|||++|||+|++.  .++|.+|.+++||+++||.||+ +++..
T Consensus       392 ~~~~g~mG~glpaaiGa~la-----------~p~~~~Vv~i~GDGsf~~~--~~eL~Ta~~~~lpi~ivV~NN~-~~g~i  457 (549)
T PRK06457        392 SAWLGSMGIGVPGSVGASFA-----------VENKRQVISFVGDGGFTMT--MMELITAKKYDLPVKIIIYNNS-KLGMI  457 (549)
T ss_pred             CCCcchhhhhHHHHHHHHhc-----------CCCCCeEEEEEcccHHhhh--HHHHHHHHHHCCCeEEEEEECC-ccchH
Confidence            45689999999999999999           66 8899999999999987  7899999999999888887775 34322


Q ss_pred             cc-----------ccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928          270 HL-----------RATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR  327 (434)
Q Consensus       270 ~~-----------~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R  327 (434)
                      ..           .....+|+.+++++||+++.+|+  ++.++..++++++    ..++|+|||+.+.+
T Consensus       458 ~~~q~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~----~~~~p~lIeV~i~~  520 (549)
T PRK06457        458 KFEQEVMGYPEWGVDLYNPDFTKIAESIGFKGFRLE--EPKEAEEIIEEFL----NTKGPAVLDAIVDP  520 (549)
T ss_pred             HHHHHHhcCCcccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEeCc
Confidence            11           01124789999999999999998  5567777666654    46899999999853

>PRK08611 pyruvate oxidase; Provisional

Probab=99.62  E-value=9.6e-16  Score=165.72  Aligned_cols=118  Identities=26%  Similarity=0.277  Sum_probs=93.9

Q ss_pred             cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCccc
Q 013928          191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMS  269 (434)
Q Consensus       191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~  269 (434)
                      ...+|+||+++|.|+|+++|           .+++.|||++|||+|++.  .++|.+|+++++|+++||.||+ |++-..
T Consensus       404 ~~~~g~mG~glpaaiGa~la-----------~p~~~Vv~i~GDGsf~m~--~~eL~Ta~r~~l~~iivV~NN~~~g~i~~  470 (576)
T PRK08611        404 SSWLGTMGCGLPGAIAAKIA-----------FPDRQAIAICGDGGFSMV--MQDFVTAVKYKLPIVVVVLNNQQLAFIKY  470 (576)
T ss_pred             CCCchhhhhhHHHHHHHHHh-----------CCCCcEEEEEcccHHhhh--HHHHHHHHHhCCCeEEEEEeCCcchHHHH
Confidence            34579999999999999999           688999999999999997  7999999999999887777775 443110


Q ss_pred             c---------cccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928          270 H---------LRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR  327 (434)
Q Consensus       270 ~---------~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R  327 (434)
                      .         ......+|+.+++++||+++.+|+  +++++..+++++    .+.++|+|||+.+.+
T Consensus       471 ~q~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a----~~~~~p~lIeV~vd~  531 (576)
T PRK08611        471 EQQAAGELEYAIDLSDMDYAKFAEACGGKGYRVE--KAEELDPAFEEA----LAQDKPVIIDVYVDP  531 (576)
T ss_pred             HHHHhcCCcccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHH----HhCCCCEEEEEEeCC
Confidence            0         001135799999999999999997  455776666555    456899999999965

>PRK08199 thiamine pyrophosphate protein; Validated

Probab=99.62  E-value=1.1e-15  Score=164.63  Aligned_cols=117  Identities=24%  Similarity=0.273  Sum_probs=93.6

Q ss_pred             CCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCcccc
Q 013928          192 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSH  270 (434)
Q Consensus       192 ~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~~  270 (434)
                      ..+|+||+++|.|+|++++           .++++|||++|||+|++.  .++|.+|+++++|+++||.||+ |++....
T Consensus       412 ~~~g~mG~glpaaiGa~la-----------~p~~~vv~i~GDGsf~~~--~~el~ta~~~~l~i~~vv~nN~~~~~~~~~  478 (557)
T PRK08199        412 PTSGSMGYGLPAAIAAKLL-----------FPERTVVAFAGDGCFLMN--GQELATAVQYGLPIIVIVVNNGMYGTIRMH  478 (557)
T ss_pred             CCCccccchHHHHHHHHHh-----------CCCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCCcchHHHHH
Confidence            4579999999999999999           788999999999999986  7999999999999999999887 4431100


Q ss_pred             -c---------ccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928          271 -L---------RATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR  327 (434)
Q Consensus       271 -~---------~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R  327 (434)
                       .         .....+|+.+++++||+++.+|+.  ++++.++++++    ++.++|+|||+.+.+
T Consensus       479 ~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~--~~el~~al~~a----~~~~gp~li~v~~~~  539 (557)
T PRK08199        479 QEREYPGRVSGTDLTNPDFAALARAYGGHGETVER--TEDFAPAFERA----LASGKPALIEIRIDP  539 (557)
T ss_pred             HHHhcCCccccccCCCCCHHHHHHHCCCeEEEeCC--HHHHHHHHHHH----HhCCCCEEEEEEeCH
Confidence             0         011246899999999999999985  45666655554    456899999999854

>PRK08322 acetolactate synthase; Reviewed

Probab=99.62  E-value=1.5e-15  Score=163.10  Aligned_cols=118  Identities=23%  Similarity=0.351  Sum_probs=94.3

Q ss_pred             cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCccc
Q 013928          191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMS  269 (434)
Q Consensus       191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~  269 (434)
                      ..++|.||+++|.|+|+++|           .|++.|||++|||+|+++  .++|.+|.++++|+++||.||+ |++...
T Consensus       402 ~~~~g~mG~~lpaaiGa~la-----------~p~~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~iiV~NN~~~g~~~~  468 (547)
T PRK08322        402 DNALATMGAGLPSAIAAKLV-----------HPDRKVLAVCGDGGFMMN--SQELETAVRLGLPLVVLILNDNAYGMIRW  468 (547)
T ss_pred             CCCcccccchhHHHHHHHHh-----------CCCCcEEEEEcchhHhcc--HHHHHHHHHhCCCeEEEEEeCCCcchHHH
Confidence            45679999999999999999           688999999999999987  7899999999999888887775 543210


Q ss_pred             c-------c--ccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928          270 H-------L--RATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR  327 (434)
Q Consensus       270 ~-------~--~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R  327 (434)
                      .       .  .....+|+.+++++||+++.+|+  +++++.+++++++    ..++|+|||+.+.+
T Consensus       469 ~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v~--~~~eL~~al~~a~----~~~~p~lIev~v~~  529 (547)
T PRK08322        469 KQENMGFEDFGLDFGNPDFVKYAESYGAKGYRVE--SADDLLPTLEEAL----AQPGVHVIDCPVDY  529 (547)
T ss_pred             HHHhhcCCcccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEecC
Confidence            0       0  01125799999999999999997  4567777666654    45799999999854

>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed

Probab=99.62  E-value=1.1e-15  Score=164.11  Aligned_cols=118  Identities=25%  Similarity=0.427  Sum_probs=94.6

Q ss_pred             cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccc
Q 013928          191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH  270 (434)
Q Consensus       191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~  270 (434)
                      .+++|+||+++|.|+|+++|           .+++.|||++|||+|++.  ..+|.+|.++++|+++||.||+ +++...
T Consensus       397 ~~~~g~mG~glpaAiGa~la-----------~p~~~vv~i~GDG~f~~~--~~eL~ta~~~~l~v~ivV~NN~-~~~~~~  462 (548)
T PRK08978        397 SSGLGTMGFGLPAAIGAQVA-----------RPDDTVICVSGDGSFMMN--VQELGTIKRKQLPVKIVLLDNQ-RLGMVR  462 (548)
T ss_pred             CCchhhhhchHHHHHHHHHh-----------CCCCcEEEEEccchhhcc--HHHHHHHHHhCCCeEEEEEeCC-ccHHHH
Confidence            45679999999999999999           688999999999999987  7899999999999888888775 333221


Q ss_pred             c----------ccc---cCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecC
Q 013928          271 L----------RAT---SDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF  328 (434)
Q Consensus       271 ~----------~~~---~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~  328 (434)
                      .          ...   ..+|+.+++++||+++.+|+  ++.++.+++++++    ..++|+|||+.+.+.
T Consensus       463 ~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~----~~~~p~lIeV~id~~  527 (548)
T PRK08978        463 QWQQLFFDERYSETDLSDNPDFVMLASAFGIPGQTIT--RKDQVEAALDTLL----NSEGPYLLHVSIDEL  527 (548)
T ss_pred             HHHHHHhCCcceecCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHH----hCCCCEEEEEEecCc
Confidence            1          001   24789999999999999997  4567777666554    467999999999653

>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated

Probab=99.62  E-value=7.8e-15  Score=146.28  Aligned_cols=135  Identities=23%  Similarity=0.255  Sum_probs=99.8

Q ss_pred             cccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCcccc-ccchHHHHHHHHHHcCCCeEEEEEcCC-ccCccccc
Q 013928          194 FAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTC-NNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHL  271 (434)
Q Consensus       194 ~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~-~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~~~  271 (434)
                      .+.||.++|+|+|+++|           .|++.|||+.|||++ ++|  .++|.+|+++++|+++||.||+ |++.....
T Consensus        69 ~g~mG~alpaAiGaklA-----------~pd~~VV~i~GDG~~~~mg--~~eL~tA~r~nl~i~vIV~NN~~YG~t~gQ~  135 (301)
T PRK05778         69 HTLHGRAIAFATGAKLA-----------NPDLEVIVVGGDGDLASIG--GGHFIHAGRRNIDITVIVENNGIYGLTKGQA  135 (301)
T ss_pred             chhhccHHHHHHHHHHH-----------CCCCcEEEEeCccHHHhcc--HHHHHHHHHHCCCcEEEEEeCchhhcccCcc
Confidence            47899999999999999           789999999999997 577  7899999999999888888885 55432110


Q ss_pred             c----------------cccCchhhhccccCCCcEE-EEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEe--cCCCCC
Q 013928          272 R----------------ATSDPQIYKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVECETY--RFRGHS  332 (434)
Q Consensus       272 ~----------------~~~~~d~~~~a~a~Gi~~~-~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~--R~~gHs  332 (434)
                      .                ....+|+..+|+++|+.++ ++.-.++.++.+++++|+    +.+||+|||+.+.  -+++..
T Consensus       136 s~t~~~g~~~~~~~~g~~~~~~d~~~lA~a~G~~~va~~~v~~~~eL~~ai~~A~----~~~GpalIeV~~~C~~~~~~~  211 (301)
T PRK05778        136 SPTTPEGSKTKTAPYGNIEPPIDPCALALAAGATFVARSFAGDVKQLVELIKKAI----SHKGFAFIDVLSPCVTFNGRN  211 (301)
T ss_pred             cCCcCCCcccccccCCCcCCCCCHHHHHHHCCCCEEEEeccCCHHHHHHHHHHHH----hCCCCEEEEEcCCCCCCCCcC
Confidence            0                0024689999999999986 445557788888777665    4689999998643  333322


Q ss_pred             CCCCCCCCCHHHHHHHh
Q 013928          333 LADPDELRDPAEKARYA  349 (434)
Q Consensus       333 ~~D~~~yR~~~e~~~~~  349 (434)
                          ...+++.+..+|.
T Consensus       212 ----~~~~~~~~~~~~~  224 (301)
T PRK05778        212 ----TSTKSPAYMREYY  224 (301)
T ss_pred             ----CcccCHHHHHHHH
Confidence                2235566666553

>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type

Probab=99.61  E-value=1.5e-15  Score=163.49  Aligned_cols=151  Identities=23%  Similarity=0.417  Sum_probs=108.9

Q ss_pred             CCHHHHHHHHhcCCCCCc--cCCCCCc-----cccc--CCCc--ccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCc
Q 013928          157 VPARAVMSELFGKATGCC--RGQGGSM-----HMFS--KEHN--LLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH  225 (434)
Q Consensus       157 ~~~~~i~~el~g~~~g~~--~G~ggs~-----h~~~--~~~~--~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~  225 (434)
                      +++..++.++....++.+  ..+.|..     +++.  .+..  ..+++|+||+++|.|+|+++|           .+++
T Consensus       363 ~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~l~aaiGa~la-----------~~~~  431 (558)
T TIGR00118       363 IKPQQVIEELSRVTKDEAIVTTDVGQHQMWAAQFYPFRKPRRFITSGGLGTMGFGLPAAIGAKVA-----------KPES  431 (558)
T ss_pred             cCHHHHHHHHHhhCCCCeEEEeCCcHHHHHHHHhcccCCCCeEEeCCccccccchhhHHHhhhhh-----------CCCC
Confidence            556667777776665432  2222321     1111  1122  245679999999999999999           6788


Q ss_pred             eEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCccccc-------------ccccCchhhhccccCCCcEEE
Q 013928          226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHL-------------RATSDPQIYKKGPAFGMPGFH  292 (434)
Q Consensus       226 ~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~-------------~~~~~~d~~~~a~a~Gi~~~~  292 (434)
                      .|||++|||+|+++  ..+|.+|.++++|+++||.||+ +++....             .....+|+.+++++||+++++
T Consensus       432 ~vv~~~GDG~f~~~--~~eL~ta~~~~l~~~~vv~NN~-~~~~~~~~q~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~  508 (558)
T TIGR00118       432 TVICITGDGSFQMN--LQELSTAVQYDIPVKILILNNR-YLGMVRQWQELFYEERYSHTHMGSLPDFVKLAEAYGIKGIR  508 (558)
T ss_pred             cEEEEEcchHHhcc--HHHHHHHHHhCCCeEEEEEeCC-chHHHHHHHHHhcCCceeeccCCCCCCHHHHHHHCCCeEEE
Confidence            99999999999986  6799999999999999999887 3332110             111247899999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928          293 VDGMDVLKVREVAKEAIERARRGEGPTLVECETYR  327 (434)
Q Consensus       293 VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R  327 (434)
                      |+.  +.++.+++++++    +.++|+|||+.+.+
T Consensus       509 v~~--~~~l~~al~~a~----~~~~p~liev~~~~  537 (558)
T TIGR00118       509 IEK--PEELDEKLKEAL----SSNEPVLLDVVVDK  537 (558)
T ss_pred             ECC--HHHHHHHHHHHH----hCCCCEEEEEEeCC
Confidence            986  457777666655    45899999999964

Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.

>PRK07282 acetolactate synthase catalytic subunit; Reviewed

Probab=99.61  E-value=1.3e-15  Score=164.31  Aligned_cols=150  Identities=25%  Similarity=0.392  Sum_probs=107.6

Q ss_pred             CCHHHHHHHHhcCCCCCc--cCCCCCc-----cccc--CCC--cccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCc
Q 013928          157 VPARAVMSELFGKATGCC--RGQGGSM-----HMFS--KEH--NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH  225 (434)
Q Consensus       157 ~~~~~i~~el~g~~~g~~--~G~ggs~-----h~~~--~~~--~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~  225 (434)
                      +++..++.++....++.+  ..++|..     +++.  .+.  ...+++|+||+++|.|+|+++|           .|++
T Consensus       369 l~~~~~~~~l~~~~~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~lA-----------~p~~  437 (566)
T PRK07282        369 VQPQAVIERIGELTNGDAIVVTDVGQHQMWAAQYYPYQNERQLVTSGGLGTMGFGIPAAIGAKIA-----------NPDK  437 (566)
T ss_pred             cCHHHHHHHHHhhcCCCeEEEECCcHHHHHHHHhcccCCCCcEecCCccccccchhhHhheehee-----------cCCC
Confidence            566777777766544322  2333321     1111  112  2245679999999999999999           7889


Q ss_pred             eEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccc------------c-ccCchhhhccccCCCcEEE
Q 013928          226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLR------------A-TSDPQIYKKGPAFGMPGFH  292 (434)
Q Consensus       226 ~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~------------~-~~~~d~~~~a~a~Gi~~~~  292 (434)
                      .|||++|||+|++.  .++|.+|.++++|+++||.||+ +++.....            . ...+|+.+++++||+.+.+
T Consensus       438 ~Vv~i~GDG~f~m~--~~eL~Ta~~~~l~i~~vV~NN~-~y~~i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~  514 (566)
T PRK07282        438 EVILFVGDGGFQMT--NQELAILNIYKVPIKVVMLNNH-SLGMVRQWQESFYEGRTSESVFDTLPDFQLMAQAYGIKHYK  514 (566)
T ss_pred             cEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCC-CchHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCEEEE
Confidence            99999999999987  7899999999999888888776 44432110            1 1357899999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928          293 VDGMDVLKVREVAKEAIERARRGEGPTLVECETYR  327 (434)
Q Consensus       293 VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R  327 (434)
                      |+.  +.++.++++    .. ..++|+|||+.+.+
T Consensus       515 v~~--~~el~~al~----~~-~~~~p~lIeV~v~~  542 (566)
T PRK07282        515 FDN--PETLAQDLE----VI-TEDVPMLIEVDISR  542 (566)
T ss_pred             ECC--HHHHHHHHH----Hh-cCCCCEEEEEEeCC
Confidence            984  456666554    22 34799999999865

>PLN02573 pyruvate decarboxylase

Probab=99.60  E-value=2.1e-15  Score=163.17  Aligned_cols=118  Identities=14%  Similarity=0.018  Sum_probs=94.6

Q ss_pred             cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccc
Q 013928          191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH  270 (434)
Q Consensus       191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~  270 (434)
                      .+++|+||+++|.|+|+++|           .++++|||++|||+|+|.  .++|.+|+++++|+++||.||+ +++...
T Consensus       424 ~~~~gsmG~glpaaiGa~lA-----------~p~r~vv~i~GDG~f~m~--~~EL~Ta~r~~lpvv~vV~NN~-~yg~~~  489 (578)
T PLN02573        424 QMQYGSIGWSVGATLGYAQA-----------APDKRVIACIGDGSFQVT--AQDVSTMIRCGQKSIIFLINNG-GYTIEV  489 (578)
T ss_pred             ecchhhhhhhhhHHHHHHHh-----------CCCCceEEEEeccHHHhH--HHHHHHHHHcCCCCEEEEEeCC-ceeEEE
Confidence            46679999999999999999           688999999999999987  7999999999999888888776 344322


Q ss_pred             cc------cccCchhhhccccCC-----CcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEe
Q 013928          271 LR------ATSDPQIYKKGPAFG-----MPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETY  326 (434)
Q Consensus       271 ~~------~~~~~d~~~~a~a~G-----i~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~  326 (434)
                      ..      ....+|+.+++++||     +++.+|+.  +.++.+++++|++.  ..++|+|||+.+.
T Consensus       490 ~~~~~~~~~~~~~d~~~lA~a~G~~~g~~~~~~V~~--~~eL~~al~~a~~~--~~~~p~lieV~v~  552 (578)
T PLN02573        490 EIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTAKVRT--EEELIEAIATATGE--KKDCLCFIEVIVH  552 (578)
T ss_pred             eecccCccccCCCCHHHHHHHhcCcCCceeEEEecC--HHHHHHHHHHHHhh--CCCCcEEEEEEcC
Confidence            11      113578999999985     89999985  55777777766531  2578999999873

>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed

Probab=99.60  E-value=8.2e-15  Score=144.61  Aligned_cols=117  Identities=16%  Similarity=0.177  Sum_probs=88.4

Q ss_pred             cccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccc-cchHHHHHHHHHHcCCCeEEEEEcCC-ccCccccc
Q 013928          194 FAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCN-NGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHL  271 (434)
Q Consensus       194 ~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~-~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~~~  271 (434)
                      .++||.++|+|+|+++|           .|++.|||+.|||+++ +|  ..++.+|+++++||++||.||+ |++.....
T Consensus        67 ~~~~G~alPaAiGaklA-----------~Pdr~VV~i~GDG~f~~~g--~~el~ta~r~nlpi~iIV~NN~~yGmt~~Q~  133 (277)
T PRK09628         67 HTTHGRAVAYATGIKLA-----------NPDKHVIVVSGDGDGLAIG--GNHTIHGCRRNIDLNFILINNFIYGLTNSQT  133 (277)
T ss_pred             eeccccHHHHHHHHHHH-----------CCCCeEEEEECchHHHHhh--HHHHHHHHHhCcCeEEEEEEChHHhcceecc
Confidence            35889999999999999           7899999999999986 45  6678889999999888888875 55422100


Q ss_pred             c----------------cccCchhhhccccCCCcEE-EEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928          272 R----------------ATSDPQIYKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR  327 (434)
Q Consensus       272 ~----------------~~~~~d~~~~a~a~Gi~~~-~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R  327 (434)
                      .                ..++.|+.++|++||++++ +..-.++.++.+++++|+    +.+||+|||+.+.-
T Consensus       134 ~~~t~~g~~~~~~~~g~~~~~~D~~~lA~a~G~~~va~~~v~~~~el~~al~~Al----~~~Gp~lIeV~~~c  202 (277)
T PRK09628        134 SPTTPKGMWTVTAQYGNIDPTFDACKLATAAGASFVARESVIDPQKLEKLLVKGF----SHKGFSFFDVFSNC  202 (277)
T ss_pred             cCCCCCCceeeeccCCCcCCCCCHHHHHHHCCCceEEEEccCCHHHHHHHHHHHH----hCCCCEEEEEcCCC
Confidence            0                0123477999999999985 333346778877666665    46899999997643

>PRK07789 acetolactate synthase 1 catalytic subunit; Validated

Probab=99.60  E-value=2.9e-15  Score=163.13  Aligned_cols=153  Identities=22%  Similarity=0.243  Sum_probs=108.4

Q ss_pred             CCHHHHHHHHhcCCCCCc--cCCCCC-----ccccc--CCCc--ccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCc
Q 013928          157 VPARAVMSELFGKATGCC--RGQGGS-----MHMFS--KEHN--LLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH  225 (434)
Q Consensus       157 ~~~~~i~~el~g~~~g~~--~G~ggs-----~h~~~--~~~~--~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~  225 (434)
                      +.+..++.++....+...  ..+.|.     .+++.  .+..  ..+++|+||+++|.|+|+++|           .+++
T Consensus       398 l~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~p~~~~~~~~~G~mG~glpaaiGa~la-----------~p~~  466 (612)
T PRK07789        398 LAPQYVIERLGEIAGPDAIYVAGVGQHQMWAAQFIDYEKPRTWLNSGGLGTMGYAVPAAMGAKVG-----------RPDK  466 (612)
T ss_pred             cCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHhcccCCCCeEEcCCCcccccchhhhHHhhhcc-----------CCCC
Confidence            566677777766544321  222232     11111  1122  245679999999999999999           6889


Q ss_pred             eEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCcccc---------c--c-cc---cCchhhhccccCCCc
Q 013928          226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSH---------L--R-AT---SDPQIYKKGPAFGMP  289 (434)
Q Consensus       226 ~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~~---------~--~-~~---~~~d~~~~a~a~Gi~  289 (434)
                      .|||++|||+|++.  .++|.+|++++||+++||.||+ |++-...         .  . ..   ..+|+.+++++||++
T Consensus       467 ~Vv~i~GDG~f~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~i~~~q~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~  544 (612)
T PRK07789        467 EVWAIDGDGCFQMT--NQELATCAIEGIPIKVALINNGNLGMVRQWQTLFYEERYSNTDLHTHSHRIPDFVKLAEAYGCV  544 (612)
T ss_pred             cEEEEEcchhhhcc--HHHHHHHHHcCCCeEEEEEECCchHHHHHHHHHhhCCCcceeecCcCCCCCCCHHHHHHHCCCe
Confidence            99999999999987  7999999999999888888775 4431100         0  0 00   136899999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928          290 GFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR  327 (434)
Q Consensus       290 ~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R  327 (434)
                      +.+|+  ++.++..++++|++.   .++|+|||+.+.+
T Consensus       545 ~~~V~--~~~eL~~al~~a~~~---~~~p~lIev~i~~  577 (612)
T PRK07789        545 GLRCE--REEDVDAVIEKARAI---NDRPVVIDFVVGK  577 (612)
T ss_pred             EEEEC--CHHHHHHHHHHHHhc---CCCcEEEEEEECC
Confidence            99997  456777777666542   3689999999864

>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family

Probab=99.58  E-value=3.8e-15  Score=159.76  Aligned_cols=150  Identities=16%  Similarity=0.129  Sum_probs=104.3

Q ss_pred             CCHHHHHHHHhcCCCCC----ccCCCCCcccc----c-CCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceE
Q 013928          157 VPARAVMSELFGKATGC----CRGQGGSMHMF----S-KEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVT  227 (434)
Q Consensus       157 ~~~~~i~~el~g~~~g~----~~G~ggs~h~~----~-~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~v  227 (434)
                      +.+.+++.++....+..    ...+.|..+++    . ......+.+|+||+++|.|+|+++|           .+ +++
T Consensus       356 i~p~~~~~~l~~~l~~~~~~ii~~D~G~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~lA-----------~~-~r~  423 (535)
T TIGR03394       356 IAPMDIARAVNDRFARHGQMPLAADIGDCLFTAMDMDDAGLMAPGYYAGMGFGVPAGIGAQCT-----------SG-KRI  423 (535)
T ss_pred             cCHHHHHHHHHHHhCCCCCEEEEEccCHHHHHHHhcCCCcEECcCccchhhhHHHHHHHHHhC-----------CC-CCe
Confidence            56666666665544321    22334432222    1 1112245779999999999999998           33 456


Q ss_pred             EEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCccccccc-------ccCchhhhccccCCCcEEEEeCCCHHH
Q 013928          228 LAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA-------TSDPQIYKKGPAFGMPGFHVDGMDVLK  300 (434)
Q Consensus       228 v~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~-------~~~~d~~~~a~a~Gi~~~~VdG~D~~a  300 (434)
                      |+++|||+|++.  .++|.||.++++|+++||.||+ +++.....+       ...+|+.+++++||+++.+|+.  +.+
T Consensus       424 v~i~GDG~f~m~--~~EL~Ta~r~~lpv~~vV~NN~-~y~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~--~~e  498 (535)
T TIGR03394       424 LTLVGDGAFQMT--GWELGNCRRLGIDPIVILFNNA-SWEMLRVFQPESAFNDLDDWRFADMAAGMGGDGVRVRT--RAE  498 (535)
T ss_pred             EEEEeChHHHhH--HHHHHHHHHcCCCcEEEEEECC-ccceeehhccCCCcccCCCCCHHHHHHHcCCCceEeCC--HHH
Confidence            889999999986  7999999999999888888875 343322111       2357899999999999999984  557


Q ss_pred             HHHHHHHHHHHHHccCCCEEEEEEEe
Q 013928          301 VREVAKEAIERARRGEGPTLVECETY  326 (434)
Q Consensus       301 v~~a~~~Al~~ar~~~gP~lIev~t~  326 (434)
                      +..++++|++   ..++|+|||+.+.
T Consensus       499 L~~al~~a~~---~~~~p~lIev~i~  521 (535)
T TIGR03394       499 LAAALDKAFA---TRGRFQLIEAMLP  521 (535)
T ss_pred             HHHHHHHHHh---cCCCeEEEEEECC
Confidence            7776666653   2356899999873

A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.

>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase

Probab=99.56  E-value=1.1e-14  Score=156.81  Aligned_cols=117  Identities=22%  Similarity=0.261  Sum_probs=92.9

Q ss_pred             cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCccc
Q 013928          191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMS  269 (434)
Q Consensus       191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~  269 (434)
                      .+++|+||+++|.|+|+++|            +++.|||++|||+|+|.  .++|.||+++++|+++||.||+ |.....
T Consensus       413 ~~~~gsmG~~lpaaiGaala------------~~~~vv~i~GDGsf~m~--~~EL~Ta~r~~l~v~~vV~NN~~~~~~~~  478 (554)
T TIGR03254       413 VGTWGVMGIGMGYAIAAAVE------------TGKPVVALEGDSAFGFS--GMEVETICRYNLPVCVVIFNNGGIYRGDD  478 (554)
T ss_pred             CCCCCcCCchHHHHHHHHhc------------CCCcEEEEEcCchhccc--HHHHHHHHHcCCCEEEEEEeChhhhhhhh
Confidence            45679999999999999998            26789999999999997  6889999999999999999886 311100


Q ss_pred             c--------ccc-ccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928          270 H--------LRA-TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR  327 (434)
Q Consensus       270 ~--------~~~-~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R  327 (434)
                      .        ... ...+||.+++++||+++++|+  ++.++..++++|+    ..++|+|||+.+.+
T Consensus       479 ~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~--~~~el~~al~~a~----~~~~p~lIev~id~  539 (554)
T TIGR03254       479 VNVVGADPAPTVLVHGARYDKMMKAFGGVGYNVT--TPDELKAALNEAL----ASGKPTLINAVIDP  539 (554)
T ss_pred             hhhcCCCCCccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEECC
Confidence            0        001 135789999999999999997  4567777666664    45789999999853

In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.

>PRK06276 acetolactate synthase catalytic subunit; Reviewed

Probab=99.56  E-value=8.1e-15  Score=158.83  Aligned_cols=117  Identities=25%  Similarity=0.370  Sum_probs=93.5

Q ss_pred             CCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCcccc
Q 013928          192 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSH  270 (434)
Q Consensus       192 ~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~~  270 (434)
                      +++|+||+++|.|+|+++|           .+++.|||++|||+|++.  ..+|.+|.++++|+++||.||+ |++....
T Consensus       416 ~~~gsmG~~lpaaiGa~la-----------~p~~~Vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~~vV~NN~~~g~~~~~  482 (586)
T PRK06276        416 GGLGTMGFGFPAAIGAKVA-----------KPDANVIAITGDGGFLMN--SQELATIAEYDIPVVICIFDNRTLGMVYQW  482 (586)
T ss_pred             CCccccccchhHHHhhhhh-----------cCCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCCchHHHHHH
Confidence            4569999999999999999           678899999999999987  6899999999999888888876 4432100


Q ss_pred             ---------ccc--ccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928          271 ---------LRA--TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR  327 (434)
Q Consensus       271 ---------~~~--~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R  327 (434)
                               ...  ....|+.+++++||+++++|+  +++++..++++++    ..++|+|||+.+.+
T Consensus       483 ~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~----~~~~p~lIeV~i~~  544 (586)
T PRK06276        483 QNLYYGKRQSEVHLGETPDFVKLAESYGVKADRVE--KPDEIKEALKEAI----KSGEPYLLDIIIDP  544 (586)
T ss_pred             HHHHhCCCcccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHH----hCCCCEEEEEEecc
Confidence                     001  124689999999999999997  4567777666665    45799999999854

>PRK09259 putative oxalyl-CoA decarboxylase; Validated

Probab=99.55  E-value=1.6e-14  Score=155.98  Aligned_cols=116  Identities=25%  Similarity=0.282  Sum_probs=92.9

Q ss_pred             cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccC--cc
Q 013928          191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAI--GM  268 (434)
Q Consensus       191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~i--s~  268 (434)
                      .+.+|+||+++|.|+|+++|            +++.|||++|||+|++.  .++|.||.++++|+++||.||+ ++  ..
T Consensus       420 ~~~~gsmG~glpaaiGa~la------------~~~~vv~i~GDG~f~m~--~~EL~Ta~r~~lpi~~vV~NN~-~~~~~~  484 (569)
T PRK09259        420 CGTWGVMGIGMGYAIAAAVE------------TGKPVVAIEGDSAFGFS--GMEVETICRYNLPVTVVIFNNG-GIYRGD  484 (569)
T ss_pred             CCCCccccccHHHHHHHHhc------------CCCcEEEEecCcccccc--HHHHHHHHHcCCCEEEEEEeCh-hHHHHH
Confidence            45679999999999999998            26789999999999987  6889999999999999999987 33  11


Q ss_pred             cc------c---cc-ccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928          269 SH------L---RA-TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR  327 (434)
Q Consensus       269 ~~------~---~~-~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R  327 (434)
                      ..      .   .. .+++|+.+++++||+++++|+.  +.++..++++|+    ..++|+|||+.+.+
T Consensus       485 ~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~--~~el~~al~~a~----~~~~p~lIev~id~  547 (569)
T PRK09259        485 DVNLSGAGDPSPTVLVHHARYDKMMEAFGGVGYNVTT--PDELRHALTEAI----ASGKPTLINVVIDP  547 (569)
T ss_pred             HHHhhcCCCccccccCCCCCHHHHHHHCCCeEEEECC--HHHHHHHHHHHH----hCCCCEEEEEEECC
Confidence            00      0   00 1357899999999999999974  567777666665    46899999999853

>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional

Probab=99.54  E-value=5.2e-14  Score=138.91  Aligned_cols=118  Identities=23%  Similarity=0.190  Sum_probs=92.3

Q ss_pred             CCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccc-cchHHHHHHHHHHcCCCeEEEEEcCC-ccCccc
Q 013928          192 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCN-NGQFFECLNMAALWKLPIVFVVENNL-WAIGMS  269 (434)
Q Consensus       192 ~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~-~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~  269 (434)
                      +..+.||.++|+|+|+++|           +|++.|||+.|||++. .|  .++|.+|+++++||++||.||+ |++...
T Consensus        57 ~~~~~mG~alp~AiGaklA-----------~pd~~VVai~GDG~~~~iG--~~eL~tA~r~nl~i~~IV~NN~~Yg~t~~  123 (280)
T PRK11869         57 GFHTLHGRAIPAATAVKAT-----------NPELTVIAEGGDGDMYAEG--GNHLIHAIRRNPDITVLVHNNQVYGLTKG  123 (280)
T ss_pred             CCCcccccHHHHHHHHHHH-----------CCCCcEEEEECchHHhhCc--HHHHHHHHHhCcCcEEEEEECHHHhhhcc
Confidence            3446699999999999999           7899999999999986 56  7899999999999888888885 554321


Q ss_pred             ccc----------------cccCchhhhccccCCCcEEEE-eCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEe
Q 013928          270 HLR----------------ATSDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVECETY  326 (434)
Q Consensus       270 ~~~----------------~~~~~d~~~~a~a~Gi~~~~V-dG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~  326 (434)
                      ...                .....|+.++++++|++++.. +-.++.++.+++++|+    +.+||+|||+.+.
T Consensus       124 Q~s~~t~~g~~~~~~p~g~~~~~~D~~~lA~a~G~~~va~~~~~~~~~l~~~i~~Al----~~~Gp~lIeV~~p  193 (280)
T PRK11869        124 QASPTTLKGFKTPTQPWGVFEEPFNPIALAIALDASFVARTFSGDIEETKEILKEAI----KHKGLAIVDIFQP  193 (280)
T ss_pred             eecCCCCCCcccccCCCCccCCCCCHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHHH----hCCCCEEEEEECC
Confidence            110                012358999999999998863 3557888888777666    4689999999754

>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase

Probab=99.54  E-value=4e-14  Score=144.69  Aligned_cols=132  Identities=18%  Similarity=0.206  Sum_probs=98.0

Q ss_pred             cccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCC-CeEEEEEcCC-ccCccccc
Q 013928          194 FAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKL-PIVFVVENNL-WAIGMSHL  271 (434)
Q Consensus       194 ~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~L-PvI~VV~NN~-y~is~~~~  271 (434)
                      .|+||+++|+|+|+++|           .+++.|||+.|||+|.+.  .++|.+++++++ |+++||.||+ |+......
T Consensus       220 ~GsMG~a~p~AlG~ala-----------~p~r~Vv~i~GDGsflm~--~~eL~t~~~~~~~nli~VVlNNg~~~~~g~q~  286 (361)
T TIGR03297       220 VGSMGHASQIALGLALA-----------RPDQRVVCLDGDGAALMH--MGGLATIGTQGPANLIHVLFNNGAHDSVGGQP  286 (361)
T ss_pred             echhhhHHHHHHHHHHH-----------CCCCCEEEEEChHHHHHH--HHHHHHHHHhCCCCeEEEEEcCccccccCCcC
Confidence            58999999999999999           678999999999999876  678999999997 7888888886 33211111


Q ss_pred             ccccCchhhhccccCCC-cEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCCCCCCCCCHHHHH
Q 013928          272 RATSDPQIYKKGPAFGM-PGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKA  346 (434)
Q Consensus       272 ~~~~~~d~~~~a~a~Gi-~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~~D~~~yR~~~e~~  346 (434)
                      ......|+.++|++||+ .+++|+  +..++.+++++++    +.++|+|||+++....+-...-+  -.++.|.+
T Consensus       287 ~~~~~~d~~~iA~a~G~~~~~~v~--~~~eL~~al~~a~----~~~gp~lIeV~v~~g~~~~l~rp--~~~p~e~~  354 (361)
T TIGR03297       287 TVSQHLDFAQIAKACGYAKVYEVS--TLEELETALTAAS----SANGPRLIEVKVRPGSRADLGRP--TTSPPENK  354 (361)
T ss_pred             CCCCCCCHHHHHHHCCCceEEEeC--CHHHHHHHHHHHH----hCCCcEEEEEEecCCCccCCCCC--CCCHHHHH
Confidence            11135789999999997 567775  6678877766654    45789999999876554332222  24566654

This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A

>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways

Probab=99.54  E-value=2.1e-14  Score=138.95  Aligned_cols=123  Identities=20%  Similarity=0.209  Sum_probs=90.9

Q ss_pred             CcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccc-cchHHHHHHHHHHcCCCeEEEEEcCC-ccCcccc
Q 013928          193 GFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCN-NGQFFECLNMAALWKLPIVFVVENNL-WAIGMSH  270 (434)
Q Consensus       193 ~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~-~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~~  270 (434)
                      ..++||+++|.|+|+++|....      ..++++|||+.|||++. +|  ..++.++.++++|+++||.||+ |++....
T Consensus        62 ~~g~mG~GlpaAiGA~~a~~~~------~~p~~~Vv~i~GDG~~~~~g--~~~l~ta~~~~l~i~ivVlNN~~yg~~~~q  133 (237)
T cd02018          62 DANAVASGLKRGLKARFPKDRE------LDKKKDVVVIGGDGATYDIG--FGALSHSLFRGEDITVIVLDNEVYSNTGGQ  133 (237)
T ss_pred             CHHHHHHHHHHHHHhhcccccc------cCCCCcEEEEeCchHHHhcc--HHHHHHHHHcCCCeEEEEECCccccCCCCC
Confidence            4599999999999999882211      14688999999999986 67  6788899999999999888886 4432111


Q ss_pred             cc----------------cccCchhhhccccCCCcEEE-EeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEe
Q 013928          271 LR----------------ATSDPQIYKKGPAFGMPGFH-VDGMDVLKVREVAKEAIERARRGEGPTLVECETY  326 (434)
Q Consensus       271 ~~----------------~~~~~d~~~~a~a~Gi~~~~-VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~  326 (434)
                      ..                ....+|+.+++++||+++++ +.-.++.++..++++|++   +.++|+|||+.+.
T Consensus       134 ~~~~~~~g~~~~~~~~~~~~~~~D~~~iA~a~G~~~~~~~~v~~~~~l~~al~~al~---~~~GP~lI~v~i~  203 (237)
T cd02018         134 RSGATPLGADSKMAPAGKKEDKKDLVLIAATHGCVYVARLSPALKKHFLKVVKEAIS---RTDGPTFIHAYTP  203 (237)
T ss_pred             CCCCCcCCCcccccCCCCcCCCCCHHHHHHHCCCCEEEEEccCCHHHHHHHHHHHHh---cCCCCEEEEEeCC
Confidence            10                11346899999999999985 233356787776666652   2689999999863

Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.

>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional

Probab=99.53  E-value=3.7e-14  Score=139.99  Aligned_cols=118  Identities=24%  Similarity=0.313  Sum_probs=93.1

Q ss_pred             CCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCcc-ccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCccc
Q 013928          192 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDG-TCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMS  269 (434)
Q Consensus       192 ~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDG-a~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~  269 (434)
                      ...+.||.++|+|+|+++|           .|+..||+++||| ++.+|  .++|.+|.++++|+++||.||+ |++...
T Consensus        56 ~~~~~~G~alp~A~GaklA-----------~Pd~~VV~i~GDG~~f~ig--~~eL~tA~rrn~~i~vIV~nN~~ygmtgg  122 (279)
T PRK11866         56 GIHGIHGRVLPIATGVKWA-----------NPKLTVIGYGGDGDGYGIG--LGHLPHAARRNVDITYIVSNNQVYGLTTG  122 (279)
T ss_pred             CcccccccHHHHHHHHHHH-----------CCCCcEEEEECChHHHHcc--HHHHHHHHHHCcCcEEEEEEChhhhhhcc
Confidence            3468899999999999999           7899999999999 68998  8999999999999888888885 555331


Q ss_pred             ccccc----------------cCchhhhccccCCCcEE-EEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEe
Q 013928          270 HLRAT----------------SDPQIYKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVECETY  326 (434)
Q Consensus       270 ~~~~~----------------~~~d~~~~a~a~Gi~~~-~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~  326 (434)
                      +...+                ...|+.++++++|++++ +....++.++.+++++|+    +.+||+|||+...
T Consensus       123 Q~s~~t~~g~~t~~t~~g~~~~~~d~~~iA~a~G~~~Va~~~~~~~~~l~~~l~~Al----~~~Gps~I~v~~p  192 (279)
T PRK11866        123 QASPTTPRGVKTKTTPDGNIEEPFNPIALALAAGATFVARGFSGDVKHLKEIIKEAI----KHKGFSFIDVLSP  192 (279)
T ss_pred             cccCCCCCCceeeccCCCCCCCCCCHHHHHHHCCCCEEEEEcCCCHHHHHHHHHHHH----hCCCCEEEEEeCC
Confidence            11000                01388999999999876 455578888877666665    5689999999743

>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed

Probab=99.52  E-value=6.5e-14  Score=138.94  Aligned_cols=116  Identities=20%  Similarity=0.208  Sum_probs=90.3

Q ss_pred             CcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccc-cccchHHHHHHHHHHcCCCeEEEEEcCC-ccCcccc
Q 013928          193 GFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGT-CNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSH  270 (434)
Q Consensus       193 ~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa-~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~~  270 (434)
                      ..++||.++|+|+|+++|           .|++.|||+.|||+ +++|  ..+|.+|.++++|+++||.||+ |++....
T Consensus        67 ~~g~mG~alpaAiGaklA-----------~Pd~~VV~i~GDG~~f~mg--~~eL~tA~r~nl~i~vIV~NN~~yGmt~~q  133 (286)
T PRK11867         67 FHTIHGRALAIATGLKLA-----------NPDLTVIVVTGDGDALAIG--GNHFIHALRRNIDITYILFNNQIYGLTKGQ  133 (286)
T ss_pred             hhhhhhcHHHHHHHHHHh-----------CCCCcEEEEeCccHHHhCC--HHHHHHHHHhCCCcEEEEEeCHHHhhhcCc
Confidence            348999999999999999           78999999999995 8888  8899999999999888888775 5553211


Q ss_pred             ccc----------------ccCchhhhccccCCCcEE-EEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEE
Q 013928          271 LRA----------------TSDPQIYKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVECET  325 (434)
Q Consensus       271 ~~~----------------~~~~d~~~~a~a~Gi~~~-~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t  325 (434)
                      ...                ....++.+++.++|...+ ++...++.++.+++++|+    +.++|+|||+.+
T Consensus       134 ~s~tt~~g~~~~~~~~g~~~~~~d~~~lA~a~Ga~~va~~~~~~~~el~~al~~Al----~~~Gp~lIev~~  201 (286)
T PRK11867        134 YSPTSPVGFVTKTTPYGSIEPPFNPVELALGAGATFVARGFDSDVKQLTELIKAAI----NHKGFSFVEILQ  201 (286)
T ss_pred             cCCCCCCCcccccccCCCCCCCCCHHHHHHHCCCcEEEEecCCCHHHHHHHHHHHH----hCCCCEEEEEeC
Confidence            100                012578889999999876 444557788877777665    468999999964

>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]

Probab=99.50  E-value=5.1e-12  Score=134.25  Aligned_cols=273  Identities=19%  Similarity=0.194  Sum_probs=171.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcC-eecccccCCCChHH-HHHHHHHhcCC------CCEEEccCcchHHH-----
Q 013928           86 KQEGLELYEDMILGRSFEDMCAQMYYRG-KMFGFVHLYNGQEA-VSTGFIKLLKK------EDSVVSTYRDHVHA-----  152 (434)
Q Consensus        86 ~e~ll~ly~~M~~~R~fe~~~~~~~~~g-k~~G~~h~~~GqEa-~~~g~~~~L~~------~D~v~~~yR~~~~~-----  152 (434)
                      ..++.+-++..++=... .++.+..+.+ ++.|+..++..--. .-++....+++      +|.||  +.+|+..     
T Consensus        74 d~~lErrir~~irWna~-a~vlRaskk~l~lGGH~aSfaSsatlyev~fnhffr~~~~~~ggDlV~--~qgHaSPg~yAr  150 (887)
T COG2609          74 DLELERRIRSLIRWNAH-AMVLRASKKGLELGGHIASFASSATLYEVGFNHFFRAKSEKDGGDLVF--FQGHASPGIYAR  150 (887)
T ss_pred             cHHHHHHHHHHHHHHHH-HHHHHccCCCCCccchhhhhhhHHHHHHHHHHHHhcCcCCCCCCceEE--EecCCCchHHHH
Confidence            33454445544443333 2233333332 34444433322221 23566677776      49998  4566432     


Q ss_pred             -HHcCC-CHHHHHHHHhcCCCCCccCCCCCcccc-cCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEE
Q 013928          153 -LSKGV-PARAVMSELFGKATGCCRGQGGSMHMF-SKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLA  229 (434)
Q Consensus       153 -La~G~-~~~~i~~el~g~~~g~~~G~ggs~h~~-~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~  229 (434)
                       ...|. +.++ +..+..-..|  .|.+.-.|.. .++..-+ .+.+||-|...|+-.|.-.||...+...+.++.+|+|
T Consensus       151 afLeGRlseeq-LdnFRqev~g--~gl~SYPhp~lmpdfwqF-pTvSmGLGp~~aiyqArf~kYL~~RGl~~~~~~~v~a  226 (887)
T COG2609         151 AFLEGRLTEEQ-LDNFRQEVDG--KGLSSYPHPKLMPDFWQF-PTVSMGLGPIQAIYQARFLKYLEARGLKDTSDQKVWA  226 (887)
T ss_pred             HHHhccccHHH-HHHHHHhccC--CCCCCCCCCcCCcccccc-CcccccccHHHHHHHHHHHHHHHhcCCcCCCCCeEEE
Confidence             22453 3333 3334443321  1222222322 1222212 3578999999999999999999877655578899999


Q ss_pred             EeCccccccchHHHHHHHHHHcCCC-eEEEEEcCCccCcccccccc-cCchhhhccccCCCcEEEE--------------
Q 013928          230 FFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWAIGMSHLRAT-SDPQIYKKGPAFGMPGFHV--------------  293 (434)
Q Consensus       230 ~~GDGa~~~G~~~EaLn~A~~~~LP-vI~VV~NN~y~is~~~~~~~-~~~d~~~~a~a~Gi~~~~V--------------  293 (434)
                      |.|||.+.++...+++..|++.+|+ ++|||+.|...+..+..... -...+..++++.||.+++|              
T Consensus       227 fLGDgEmDEpes~gAi~~A~re~LdNlifVincNlQrLDgpVrgngkiiqelE~~FrgAGW~VikviWg~~wd~ll~kd~  306 (887)
T COG2609         227 FLGDGEMDEPESRGAITEAAREKLDNLIFVINCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGRRWDELLAKDT  306 (887)
T ss_pred             EecCcccCCchhhHHHHHHHHhcCCceEEEEecchhhcCCcccCCchhHHHHHHHhccCCceEEEEEecccHHHHhcccC
Confidence            9999999999999999999999998 99999999878887764432 1246788899999999987              


Q ss_pred             -------------------------------------------------------eCCCHHHHHHHHHHHHHHHHccC-C
Q 013928          294 -------------------------------------------------------DGMDVLKVREVAKEAIERARRGE-G  317 (434)
Q Consensus       294 -------------------------------------------------------dG~D~~av~~a~~~Al~~ar~~~-g  317 (434)
                                                                             -|+|+..|++|++.|.    ..+ +
T Consensus       307 ~gkL~~~m~e~~dgdyqt~kakdGayvRehff~~~Pe~~aLVa~~tD~diw~L~rGGHD~~ki~aA~~~A~----~~kg~  382 (887)
T COG2609         307 GGKLRQLMNETVDGDYQTFKAKDGAYVREHFFGRYPETAALVADMTDDDIWALNRGGHDPEKVYAAFKKAQ----EHKGR  382 (887)
T ss_pred             cchHHHHHHhcccchhhhhcccccHHHHHHHhccChHHHHHHHhccHHHHHHHhcCCCCHHHHHHHHHHHh----cCCCC
Confidence                                                                   4899999999777665    444 8


Q ss_pred             CEEEEEEEecCCCCCCCCCCCCCCHHHHHHHhcCChHHHHHHHHHHcCC-CCHHHHHH
Q 013928          318 PTLVECETYRFRGHSLADPDELRDPAEKARYAARDPITALKKYLIESSL-ASEAELKA  374 (434)
Q Consensus       318 P~lIev~t~R~~gHs~~D~~~yR~~~e~~~~~~~DPl~~~~~~L~~~G~-~te~e~~~  374 (434)
                      |++|-++|.+++|-...-..+--..+..  -...|-|+.||+.+   |+ ++++|+++
T Consensus       383 PtvilA~TIKGyglg~~~eg~n~aHq~k--km~~~~l~~~Rdr~---~ipvsd~e~e~  435 (887)
T COG2609         383 PTVILAKTIKGYGLGEAAEGKNIAHQVK--KMTPDQLKEFRDRF---GIPVSDAELEE  435 (887)
T ss_pred             ceEEEEeeeccccCchhhcccchhhhhh--cCCHHHHHHHHhhc---CCCCchhhhhc
Confidence            9999999999998754322111000000  01224566777766   44 46666665

>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated

Probab=99.48  E-value=4.3e-14  Score=152.52  Aligned_cols=115  Identities=20%  Similarity=0.206  Sum_probs=90.1

Q ss_pred             CCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCc-cc
Q 013928          192 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIG-MS  269 (434)
Q Consensus       192 ~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is-~~  269 (434)
                      .+++.||+++|.|+|+++|            +++.|||++|||+|+++  ..+|.+|+++++|+++||.||+ |++- ..
T Consensus       422 ~g~~~~G~~lpaaiGaala------------~~~~vv~i~GDGsf~~~--~~eL~Ta~r~~l~i~ivVlNN~g~~~~~~~  487 (568)
T PRK07449        422 RGASGIDGLLSTAAGVARA------------SAKPTVALIGDLSFLHD--LNGLLLLKQVPAPLTIVVVNNNGGGIFSLL  487 (568)
T ss_pred             CCccchhhHHHHHHHHHhc------------CCCCEEEEechHHhhcC--cHHHHhhcccCCCeEEEEEECCCCccccCC
Confidence            4467899999999999998            36789999999999987  6899999999999888888776 5521 11


Q ss_pred             ccc-----------cccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEe
Q 013928          270 HLR-----------ATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETY  326 (434)
Q Consensus       270 ~~~-----------~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~  326 (434)
                      ...           ....+|+.+++++||+++.+|+  ++.++..++++|+    +.++|+|||+.+.
T Consensus       488 ~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~~V~--~~~eL~~al~~a~----~~~~p~lIev~id  549 (568)
T PRK07449        488 PQPEEEPVFERFFGTPHGVDFAHAAAMYGLEYHRPE--TWAELEEALADAL----PTPGLTVIEVKTN  549 (568)
T ss_pred             CCCCCcchhhHhhcCCCCCCHHHHHHHcCCCccCCC--CHHHHHHHHHHHh----cCCCCEEEEEeCC
Confidence            100           0134689999999999999997  4567777666654    5679999999873

>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family

Probab=99.48  E-value=1.7e-13  Score=135.69  Aligned_cols=117  Identities=23%  Similarity=0.308  Sum_probs=88.0

Q ss_pred             CCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccc-cchHHHHHHHHHHcCCCeEEEEEcCC-ccCccc
Q 013928          192 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCN-NGQFFECLNMAALWKLPIVFVVENNL-WAIGMS  269 (434)
Q Consensus       192 ~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~-~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~  269 (434)
                      +..+.||.++|+|+|+++|           +|++.|||+.|||++. +|  .++|.+|+++++||++||.||+ |++...
T Consensus        50 ~~~t~mG~alPaAiGaklA-----------~Pd~~VVai~GDG~f~~mg--~~eL~tA~r~nl~I~vIVlNN~~yGmt~g  116 (287)
T TIGR02177        50 GFHGLHGRALPVATGIKLA-----------NPHLKVIVVGGDGDLYGIG--GNHFVAAGRRNVDITVIVHDNQVYGLTKG  116 (287)
T ss_pred             CcccccccHHHHHHHHHHH-----------CCCCcEEEEeCchHHHhcc--HHHHHHHHHhCcCeEEEEEECHHHHhhhc
Confidence            3346689999999999999           7899999999999974 87  8899999999999888888885 554321


Q ss_pred             ccccc------------------cCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEe
Q 013928          270 HLRAT------------------SDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETY  326 (434)
Q Consensus       270 ~~~~~------------------~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~  326 (434)
                      ....+                  .++++..++.++|+.....- .++.++.+++++|+    +.+||+|||+.+.
T Consensus       117 Q~sp~t~~G~~~~~~~~g~~~~~~np~~~a~A~g~g~va~~~~-~~~~eL~~ai~~Al----~~~GpslIeV~~p  186 (287)
T TIGR02177       117 QASPTLLKGVKTKSLPYPNIQDPVNPLLLAIALGYTFVARGFS-GDVAHLKEIIKEAI----NHKGYALVDILQP  186 (287)
T ss_pred             ccccCccCCcceeecccCccCCCCCHHHHHHhCCCCeEEEEec-CCHHHHHHHHHHHH----hCCCCEEEEEeCC
Confidence            11000                  13456677888887666522 57788887777665    4689999999753

Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.

>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit

Probab=99.44  E-value=7.3e-13  Score=143.93  Aligned_cols=159  Identities=23%  Similarity=0.208  Sum_probs=111.7

Q ss_pred             HHHHHcCCCHHHHHHHHhcCCCCCc--cCCCCCccccc-CCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCce
Q 013928          150 VHALSKGVPARAVMSELFGKATGCC--RGQGGSMHMFS-KEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHV  226 (434)
Q Consensus       150 ~~~La~G~~~~~i~~el~g~~~g~~--~G~ggs~h~~~-~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~  226 (434)
                      ...+.-|++-..++.++....+...  .++.|.+.++. ++..+...+++||+++|.|+|+++|           .+++.
T Consensus       355 ~~~~C~GCp~~~~~~~l~~~l~~d~ivv~D~G~~~~~~~~p~~~~~~~~~mG~~~~~AiGa~~a-----------~p~~~  423 (595)
T TIGR03336       355 PPSLCAGCPHRATFYAMKKVADREAIFPSDIGCYTLGIQPPLGTVDTTLCMGASIGVASGLSKA-----------GEKQR  423 (595)
T ss_pred             CCCCCCCCCChHHHHHHHHhccCCcEEecCcchhhccccCCccccceeeccCchHHHHhhhhhc-----------CCCCC
Confidence            4445567766667666665554332  34545333322 2333444568999999999999999           68899


Q ss_pred             EEEEeCcccccc-chHHHHHHHHHHcCCCeEEEEEcC-CccCcccccc-c---------ccCchhhhccccCCCcEEEEe
Q 013928          227 TLAFFGDGTCNN-GQFFECLNMAALWKLPIVFVVENN-LWAIGMSHLR-A---------TSDPQIYKKGPAFGMPGFHVD  294 (434)
Q Consensus       227 vv~~~GDGa~~~-G~~~EaLn~A~~~~LPvI~VV~NN-~y~is~~~~~-~---------~~~~d~~~~a~a~Gi~~~~Vd  294 (434)
                      ||+++|||+|.+ |  .++|.+|.++++|+++||.|| .|++...... .         ...+|+.+++++||+++.+|.
T Consensus       424 Vv~i~GDG~f~~~g--~~eL~tav~~~~~i~~vVlnN~~~g~~~~q~~~~~~~~~~~~~~~~~d~~~ia~a~G~~~~~v~  501 (595)
T TIGR03336       424 IVAFIGDSTFFHTG--IPGLINAVYNKANITVVILDNRITAMTGHQPNPGTGVTGMGEATKEISIEELCRASGVEFVEVV  501 (595)
T ss_pred             EEEEeccchhhhcC--HHHHHHHHHcCCCeEEEEEcCcceeccCCCCCCCCCCCCCCCcCCCcCHHHHHHHcCCCEEEEe
Confidence            999999999985 5  679999999999988888877 4554321110 0         124689999999999999987


Q ss_pred             CC-CHHHHHHHHHHHHHHHHccCCCEEEEEEE
Q 013928          295 GM-DVLKVREVAKEAIERARRGEGPTLVECET  325 (434)
Q Consensus       295 G~-D~~av~~a~~~Al~~ar~~~gP~lIev~t  325 (434)
                      .. |+.++.+++++++    ..++|++|++..
T Consensus       502 ~~~~l~~l~~al~~a~----~~~gp~li~v~~  529 (595)
T TIGR03336       502 DPLNVKETIEVFKAAL----AAEGVSVIIAKQ  529 (595)
T ss_pred             CcCCHHHHHHHHHHHH----hcCCCEEEEEcc
Confidence            64 5455666665555    467999999954

Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.

>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional

Probab=99.43  E-value=4.3e-12  Score=126.23  Aligned_cols=186  Identities=19%  Similarity=0.144  Sum_probs=130.5

Q ss_pred             CCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccc-cchHHHHHHHHHHcCCCeEEEEEcCC-c
Q 013928          187 EHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCN-NGQFFECLNMAALWKLPIVFVVENNL-W  264 (434)
Q Consensus       187 ~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~-~G~~~EaLn~A~~~~LPvI~VV~NN~-y  264 (434)
                      .+++....+.+|.+.++|.|++.|.+..       +++..|||+.|||++. .|  .++|.-|...+.++++||.||+ |
T Consensus        61 ~~~~~~~~~~fg~~~a~a~Gi~~a~~~~-------~~~~~Vv~~~GDG~~~dIG--~~~L~~a~~r~~ni~~ivlDNe~Y  131 (299)
T PRK11865         61 AWNVPWIHVAFENAAAVASGIERAVKAL-------GKKVNVVAIGGDGGTADIG--FQSLSGAMERGHNILYLMYDNEAY  131 (299)
T ss_pred             ccccccchhhhcchHHHHHHHHHHHHHh-------cCCCeEEEEeCCchHhhcc--HHHHHHHHHcCCCeEEEEECCccc
Confidence            3456667789999999999999997765       3467899999999974 77  6999999999999999999997 3


Q ss_pred             cCcccccc---------------------cccCchhhhccccCCCcEE-EEeCCCHHHHHHHHHHHHHHHHccCCCEEEE
Q 013928          265 AIGMSHLR---------------------ATSDPQIYKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVE  322 (434)
Q Consensus       265 ~is~~~~~---------------------~~~~~d~~~~a~a~Gi~~~-~VdG~D~~av~~a~~~Al~~ar~~~gP~lIe  322 (434)
                      +.+..+..                     .....|+..++.++|++++ +++-.++.++.+++++|+    +.+||.||+
T Consensus       132 ~nTGgQ~S~~Tp~Ga~t~tsp~Gk~~~G~~~~kkd~~~Ia~a~g~~YVA~~~~~~~~~l~~~i~~A~----~~~Gps~I~  207 (299)
T PRK11865        132 MNTGIQRSGSTPFGASTTTSPAGKYSRGEDRPKKNMPLIMAAHGIPYVATASIGYPEDFMEKVKKAK----EVEGPAYIQ  207 (299)
T ss_pred             cCCCCCCCCCCCCCcccccCCCCcccCCCCCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHH----hCCCCEEEE
Confidence            33221110                     1123578889999999887 778789999988777766    468999999


Q ss_pred             EEEe--cCCCCCCCC--------------------CCCCC---CHHHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHHH
Q 013928          323 CETY--RFRGHSLAD--------------------PDELR---DPAEKARYAARDPITALKKYLIESSLASEAELKAIEK  377 (434)
Q Consensus       323 v~t~--R~~gHs~~D--------------------~~~yR---~~~e~~~~~~~DPl~~~~~~L~~~G~~te~e~~~i~~  377 (434)
                      +.+.  ..+++...+                    +..++   .+..+. -+.+.|+..|-+..-++..+++++++++++
T Consensus       208 v~sPC~~~~~~~~~~~~~~~klAvetg~~plye~~~g~~~~~~~~~~ld-~~~~~pv~~~l~~q~Rf~~L~~~~~~~~q~  286 (299)
T PRK11865        208 VLQPCPTGWGFPPEKTIEIGRLAVETGYWPLFEIENGKFKITYEPLHLD-RRTRKPIEEYLKVQGRFKHLTEEDIEILQK  286 (299)
T ss_pred             EECCCCCCCCCCHHHHHHHHHHHHhcCceeEEEEECCeeccCCCccccc-ccCCCCHHHHHhhCcchhcCCHHHHHHHHH
Confidence            9754  445444221                    11111   111111 011346555555555566778999999999


Q ss_pred             HHHHHHHHH
Q 013928          378 KIDEVVEDA  386 (434)
Q Consensus       378 e~~~~v~~a  386 (434)
                      ++++.++.-
T Consensus       287 ~v~~~~~~~  295 (299)
T PRK11865        287 YIDEKWKEL  295 (299)
T ss_pred             HHHHHHHHH
Confidence            999887654

>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]

Probab=99.37  E-value=2.9e-12  Score=133.00  Aligned_cols=162  Identities=22%  Similarity=0.236  Sum_probs=110.8

Q ss_pred             CChHHHHHHHHHhcCCCCEEEccCcchHHHHHcCCCHHHHHHHHhcCCCCCccCCCCCcccccCCCc--ccCCccccccc
Q 013928          123 NGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHN--LLGGFAFIGEG  200 (434)
Q Consensus       123 ~GqEa~~~g~~~~L~~~D~v~~~yR~~~~~La~G~~~~~i~~el~g~~~g~~~G~ggs~h~~~~~~~--~~~~~g~lG~g  200 (434)
                      +=||-+.--+...|+++|.|+.- -|  .             .+||          +.-+.+.....  .-+-+|++|+.
T Consensus       363 Ltq~~~w~~~~~fl~p~dviiae-tG--t-------------S~FG----------~~~~~lP~~~~~i~Q~lWGSIG~t  416 (557)
T COG3961         363 LTQEWLWNTVQNFLKPGDVIIAE-TG--T-------------SFFG----------ALDIRLPKGATFISQPLWGSIGYT  416 (557)
T ss_pred             ccHHHHHHHHHhhCCCCCEEEEc-cc--c-------------cccc----------ceeeecCCCCeEEcccchhhcccc
Confidence            55777777788889999988863 01  0             0111          11222222222  24568999999


Q ss_pred             chhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCC-eEEEEEcCCccCcccccccc-----
Q 013928          201 IPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWAIGMSHLRAT-----  274 (434)
Q Consensus       201 lp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vI~VV~NN~y~is~~~~~~~-----  274 (434)
                      +|+|+|+++|           .++++||.|+||||+++.  .+++.+..+|+|+ +|||++|++|.|..-.+...     
T Consensus       417 ~pAalGa~~A-----------~~drR~IL~iGDGs~QlT--vQEiStmiR~gl~p~ifvlNN~GYTIEr~IHg~~~~YNd  483 (557)
T COG3961         417 LPAALGAALA-----------APDRRVILFIGDGSLQLT--VQEISTMIRWGLKPIIFVLNNDGYTIERAIHGPTAPYND  483 (557)
T ss_pred             cHhhhhhhhc-----------CCCccEEEEEcCchhhhh--HHHHHHHHHcCCCcEEEEEcCCCcEEEehhcCCCcCccc
Confidence            9999999999           789999999999999986  8999999999998 77777788888765443311     


Q ss_pred             -cCchhhhccccCCCcEEEE--eCCCHHHHHHHHHHHHHHHHc-cCCCEEEEEEEec
Q 013928          275 -SDPQIYKKGPAFGMPGFHV--DGMDVLKVREVAKEAIERARR-GEGPTLVECETYR  327 (434)
Q Consensus       275 -~~~d~~~~a~a~Gi~~~~V--dG~D~~av~~a~~~Al~~ar~-~~gP~lIev~t~R  327 (434)
                       ...|+.++.++||..-...  .-...+++..    +++.+.+ .+++.+|||++.+
T Consensus       484 I~~Wd~~~l~~afg~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~i~lIEv~lp~  536 (557)
T COG3961         484 IQSWDYTALPEAFGAKNGEAKFRATTGEELAL----ALDVAFANNDRIRLIEVMLPV  536 (557)
T ss_pred             ccccchhhhhhhcCCCCceEEEeecChHHHHH----HHHHHhcCCCceEEEEEecCc
Confidence             2467888889998754332  1112223333    4444443 4689999998754

>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]

Probab=99.34  E-value=2.4e-12  Score=130.39  Aligned_cols=153  Identities=24%  Similarity=0.332  Sum_probs=114.5

Q ss_pred             CCHHHHHHHHhcCCCCC------ccCCCCCccccc-------C--CCcccCCcccccccchhhHHHHHHHHHHHhhhhhc
Q 013928          157 VPARAVMSELFGKATGC------CRGQGGSMHMFS-------K--EHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEA  221 (434)
Q Consensus       157 ~~~~~i~~el~g~~~g~------~~G~ggs~h~~~-------~--~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~  221 (434)
                      ++|+.++.+|.....+.      +.| .|..+||.       +  .+..+++.|.||+|+|+|+|+..|           
T Consensus       472 ikPQ~vIk~Ldk~t~d~~~kviitTG-VGqHQMWAAqfy~w~kP~~~~tSGGLGtMGfGLPAAIGAsVA-----------  539 (675)
T KOG4166|consen  472 IKPQYVIKVLDKLTDDTGRKVIITTG-VGQHQMWAAQFYNWKKPRQWLTSGGLGTMGFGLPAAIGASVA-----------  539 (675)
T ss_pred             cChHHHHHHHHHhccCcCceEEEecc-ccHHHHHHHHHhcccCccceeecCCccccccCcchhhccccc-----------
Confidence            56777777776655542      112 22222321       1  233468899999999999999999           


Q ss_pred             CCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCccccccc------------ccCchhhhccccCCCc
Q 013928          222 DCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA------------TSDPQIYKKGPAFGMP  289 (434)
Q Consensus       222 ~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~------------~~~~d~~~~a~a~Gi~  289 (434)
                      +|+.+||-+-||++|.|.  ..+|.++.+.++||-+++.||+ -.++.+++|            ..+|++.++|.++|++
T Consensus       540 ~P~~iViDIDGDaSF~Mt--~~ELat~rq~~~PVKiLiLNNe-eqGMVtQWq~lFYe~rysHThQ~nPnf~klA~AmGik  616 (675)
T KOG4166|consen  540 NPDAIVIDIDGDASFIMT--VQELATIRQENLPVKILILNNE-EQGMVTQWQDLFYEARYSHTHQENPNFLKLAAAMGIK  616 (675)
T ss_pred             CcccEEEeccCCceeeee--hHhhhhhhhcCCceEEEEecch-hhhhHHHHHHHHHHhhhccccccCccHHHHHHhcCCc
Confidence            899999999999999987  7899999999999999999996 444433322            1468999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCC
Q 013928          290 GFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRG  330 (434)
Q Consensus       290 ~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~g  330 (434)
                      ..||.-.  +++.+    +++.....+||+|+|+.+.....
T Consensus       617 alRV~K~--edL~~----k~keflsTkGPvLleV~v~~keh  651 (675)
T KOG4166|consen  617 ALRVTKK--EDLRE----KIKEFLSTKGPVLLEVIVPHKEH  651 (675)
T ss_pred             hheeehH--HHHHH----HHHHHhCCCCCeEEEEEccCccc
Confidence            9999854  35555    55555678999999998865443

>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]

Probab=99.28  E-value=2.7e-11  Score=124.64  Aligned_cols=120  Identities=23%  Similarity=0.314  Sum_probs=94.8

Q ss_pred             cccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC--ccC
Q 013928          189 NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL--WAI  266 (434)
Q Consensus       189 ~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~--y~i  266 (434)
                      .-.+.+|+||-|++.|+++|++           .|++.|+|+.||++|...  .-++.|+++|+|||++||.||.  |++
T Consensus       424 LDaGtfgTMGVG~Gfalaaa~~-----------~P~~~V~~veGDsaFGfS--aME~ET~vR~~Lpvv~vV~NN~Giyg~  490 (571)
T KOG1185|consen  424 LDAGTFGTMGVGLGFALAAALA-----------APDRKVVCVEGDSAFGFS--AMELETFVRYKLPVVIVVGNNNGIYGL  490 (571)
T ss_pred             cCCccccccccchhHHHHHHhh-----------CCCCeEEEEecCcccCcc--hhhHHHHHHhcCCeEEEEecCCccccc
Confidence            3468899999999999999999           799999999999999764  6689999999999888888663  333


Q ss_pred             ccccccc---------------ccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEe
Q 013928          267 GMSHLRA---------------TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETY  326 (434)
Q Consensus       267 s~~~~~~---------------~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~  326 (434)
                      ......+               ..+.++.+.+++||..++.|+  .++++..++++++   +.+++|++|.+..-
T Consensus       491 d~~~~~~I~e~~~~~~~p~~~l~~~~rY~~v~ka~G~kG~~v~--t~~el~~~l~~a~---q~~~~psvINVlI~  560 (571)
T KOG1185|consen  491 DDDGWKQISEQDPTLDLPPTALLANTRYDKVAKAFGGKGYFVS--TVEELLAALQQAC---QDTDKPSVINVLIG  560 (571)
T ss_pred             CcccHHHHhhcCcccCCCcccccccccHHHHHHHcCCCceeeC--CHHHHHHHHHHHH---hcCCCCeEEEEEec
Confidence            2221111               123577889999999999998  5678888777765   45679999999763

>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding

Probab=99.28  E-value=5.1e-12  Score=150.74  Aligned_cols=118  Identities=20%  Similarity=0.130  Sum_probs=91.7

Q ss_pred             cCCcccccc--cchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHc--CCCeEEEEEcCC-cc
Q 013928          191 LGGFAFIGE--GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALW--KLPIVFVVENNL-WA  265 (434)
Q Consensus       191 ~~~~g~lG~--glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~--~LPvI~VV~NN~-y~  265 (434)
                      .++.|.||+  ++|.|+|+++|           . +++|+|++|||+|++.  .++|.+|+++  ++|+++||.||+ |+
T Consensus       755 ~~~~G~mG~~G~lpaAIGaala-----------~-~r~Vv~i~GDGsF~m~--~~EL~Ta~r~~~~lpi~iVV~NN~ggg  820 (1655)
T PLN02980        755 AGNRGASGIDGLLSTAIGFAVG-----------C-NKRVLCVVGDISFLHD--TNGLSILSQRIARKPMTILVINNHGGA  820 (1655)
T ss_pred             EecCCccchhhhHHHHHHHhhc-----------C-CCCEEEEEehHHHHhh--hhHHHHhhcccCCCCEEEEEEeCCCcH
Confidence            467799999  59999999988           4 6789999999999987  7899999984  999888888886 33


Q ss_pred             Cccc------ccc----c----ccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecC
Q 013928          266 IGMS------HLR----A----TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF  328 (434)
Q Consensus       266 is~~------~~~----~----~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~  328 (434)
                      +-..      ...    .    ..++|+.+++++||+++.+|+.  +.++..+++++    ...++|+||||.|.|-
T Consensus       821 i~~~l~~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~rV~~--~~eL~~aL~~a----~~~~~p~lIEV~t~~~  891 (1655)
T PLN02980        821 IFSLLPIAKRTEPRVLNQYFYTSHDISIENLCLAHGVRHLHVGT--KSELEDALFTS----QVEQMDCVVEVESSID  891 (1655)
T ss_pred             hhhcCccCCCCcchhHHHHhcCCCCCCHHHHHHHcCCceeecCC--HHHHHHHHHHh----hccCCCEEEEEecChh
Confidence            3211      000    0    1347899999999999999984  55776655544    4568999999999653

>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria

Probab=99.18  E-value=1.5e-11  Score=123.36  Aligned_cols=202  Identities=19%  Similarity=0.267  Sum_probs=120.6

Q ss_pred             ecccccCCCChHHHHHHHHHhcCC--CCEEEccCcchHHH-HHcCCCHHHHHHHHhcCCCCCc----------cCCCC-C
Q 013928          115 MFGFVHLYNGQEAVSTGFIKLLKK--EDSVVSTYRDHVHA-LSKGVPARAVMSELFGKATGCC----------RGQGG-S  180 (434)
Q Consensus       115 ~~G~~h~~~GqEa~~~g~~~~L~~--~D~v~~~yR~~~~~-La~G~~~~~i~~el~g~~~g~~----------~G~gg-s  180 (434)
                      ..|++.++.|+..+.+.+..++++  .|+++-.--||+.. +....-++..+.+++...+...          .-.+| .
T Consensus        46 llGHWGt~PGlnfiyahlNrlI~~~~~~~~~v~GpGHg~pai~A~~~LeGs~se~yp~~~~d~~Gl~~L~~~FS~PgGip  125 (379)
T PF09364_consen   46 LLGHWGTSPGLNFIYAHLNRLIRKYDLDMIYVMGPGHGGPAILANLYLEGSYSEFYPDISQDEEGLRRLFRQFSFPGGIP  125 (379)
T ss_dssp             --S-TTTHHHHHHHHHHHHHHHHHHTB-B--EESSGGGHHHHHHHHHHHSHHHHHSTTS-SSHHHHHHHHHHBTSTTSB-
T ss_pred             cccccCCCccHHHHHHHHHHHHHhcCCceEEEecCCCCchhhhhhhhhcCccccccCCCCCCHHHHHHHHHhCCCCCCCc
Confidence            578888899999999999999886  56677777788753 2211122222222222211110          00122 5


Q ss_pred             cccccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCC-----C-
Q 013928          181 MHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKL-----P-  254 (434)
Q Consensus       181 ~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~L-----P-  254 (434)
                      .|......+.....|-||+++..|.|+++-           +||.+|+|++|||++.+|.      +|+.|+.     | 
T Consensus       126 SH~~p~tPGsIhEGGELGYaLshA~GA~~D-----------nPdliv~~vvGDGEaETGp------lA~sWh~~kflnP~  188 (379)
T PF09364_consen  126 SHVSPETPGSIHEGGELGYALSHAFGAVFD-----------NPDLIVACVVGDGEAETGP------LAASWHSNKFLNPA  188 (379)
T ss_dssp             SSS-TTSTT-S---SSTS-HHHHHHHHHTT------------TT-EEEEEEETTGGGSHH------HHHHGGGGGSS-TT
T ss_pred             cccCcCCCCccCcCcchhhHHHHHhhcccC-----------CCCeEEEEEecCCcccCCc------ccccccccceeCcc
Confidence            677666566666678999999999999997           8999999999999999985      5555542     2 


Q ss_pred             ----eEEEEEcCCccCcccccccc-cCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHH----HH-------ccC--
Q 013928          255 ----IVFVVENNLWAIGMSHLRAT-SDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIER----AR-------RGE--  316 (434)
Q Consensus       255 ----vI~VV~NN~y~is~~~~~~~-~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~----ar-------~~~--  316 (434)
                          |+=|+.=|+|.|+.++-..+ +..++.+.+++||+..+.|+|.|+.++...+..+++.    .+       +++  
T Consensus       189 ~dGaVLPILhLNG~KI~~pTil~r~~~~eL~~lf~G~Gy~p~~Veg~dp~~~h~~ma~ald~a~~~I~~iq~~Ar~~~~~  268 (379)
T PF09364_consen  189 TDGAVLPILHLNGYKISNPTILARMSDEELEALFRGYGYEPIFVEGDDPADMHQAMAAALDWALEEIRAIQKAARSGNPA  268 (379)
T ss_dssp             TS-EEEEEEEE-SBSSSSB-HHHHS-HHHHHHHHHHTTEEEEEEE---HHHHHHHHHHHHHHHHHHHHHHHHHHTT--SS
T ss_pred             cCceeeceEEecCccccCCeEeeecCHHHHHHHHHhCCCeEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence                66677779999998875443 3467899999999999999999998887766555433    22       221  


Q ss_pred             -CC--EEEEEEEecCCCCCC
Q 013928          317 -GP--TLVECETYRFRGHSL  333 (434)
Q Consensus       317 -gP--~lIev~t~R~~gHs~  333 (434)
                       +|  -+|.++|.++++-+.
T Consensus       269 ~~prwPmivlRtPKGWtgP~  288 (379)
T PF09364_consen  269 YRPRWPMIVLRTPKGWTGPK  288 (379)
T ss_dssp             ----EEEEEEE--TTTTS-S
T ss_pred             CCCCCcEEEEECCcccCCcc
Confidence             23  357788888877654

PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.

>COG3962 Acetolactate synthase [Amino acid transport and metabolism]

Probab=99.13  E-value=4.1e-10  Score=115.48  Aligned_cols=158  Identities=19%  Similarity=0.279  Sum_probs=115.5

Q ss_pred             CChHHHHHHHHHhcCCCCEEEcc---CcchHHHHHcCCCHHHHHHHHhcCCCCCccCCCCCcccccCCCcccCCcccccc
Q 013928          123 NGQEAVSTGFIKLLKKEDSVVST---YRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGE  199 (434)
Q Consensus       123 ~GqEa~~~g~~~~L~~~D~v~~~---yR~~~~~La~G~~~~~i~~el~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~  199 (434)
                      ..|--+.-++...+.+++.|++.   -.|-.+-|++                   .+.-+++|+       .-++++||+
T Consensus       395 ptq~~vigav~~~~~~~svvvcAAGsLPGdLhkLW~-------------------~~~p~~YH~-------EYgfSCMGY  448 (617)
T COG3962         395 PTQTQVIGAVQRTISDDSVVVCAAGSLPGDLHKLWR-------------------AGVPGTYHL-------EYGFSCMGY  448 (617)
T ss_pred             ccchhHHHHHHhhcCCCcEEEEeCCCCcHHHHHHhc-------------------cCCCCceee-------eeccccccc
Confidence            45544555677778888888874   2222222221                   122345665       335789999


Q ss_pred             cchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCccccc--------
Q 013928          200 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHL--------  271 (434)
Q Consensus       200 glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~--------  271 (434)
                      -+.-++|+++|           .|++-|++++||||++|=  +.+|.++..++..|++|+.+|. +++-+..        
T Consensus       449 EiaG~lG~K~a-----------~pdreV~vmVGDGSymMl--nSEL~Tsv~~g~Ki~Vvl~DN~-GyGCIn~LQm~~Gg~  514 (617)
T COG3962         449 EIAGGLGAKAA-----------EPDREVYVMVGDGSYMML--NSELATSVMLGKKIIVVLLDNR-GYGCINRLQMATGGA  514 (617)
T ss_pred             ccccccccccC-----------CCCCeEEEEEcccchhhh--hHHHHHHHHcCCeEEEEEECCC-CcchhhhhhhhcCcc
Confidence            99999999987           788999999999999884  8999999999999888877764 3332211        


Q ss_pred             ------------ccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEe
Q 013928          272 ------------RATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETY  326 (434)
Q Consensus       272 ------------~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~  326 (434)
                                  ......||++.+++||+..++|.  ++.++..    |++.++...+++||+++|.
T Consensus       515 sf~~~~r~~~~e~~~~~vDfA~~A~s~Ga~~~kv~--~i~eL~a----AL~~Ak~~~~ttvi~I~t~  575 (617)
T COG3962         515 SFNNLLRDTDHEEEILQVDFAAHAESYGAKAYKVG--TIEELEA----ALADAKASDRTTVIVIDTD  575 (617)
T ss_pred             hhhhhhhhhcccCCCCcccHHHHHhhcCceeEecC--CHHHHHH----HHHHHHhCCCCEEEEEecC
Confidence                        11345689999999999999997  5555554    6677788899999999874

>COG3960 Glyoxylate carboligase [General function prediction only]

Probab=99.05  E-value=3.5e-10  Score=112.03  Aligned_cols=157  Identities=22%  Similarity=0.278  Sum_probs=121.4

Q ss_pred             HHHHHhcCCCCCccCCCC-------CcccccCCCcc-cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCc
Q 013928          162 VMSELFGKATGCCRGQGG-------SMHMFSKEHNL-LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGD  233 (434)
Q Consensus       162 i~~el~g~~~g~~~G~gg-------s~h~~~~~~~~-~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GD  233 (434)
                      -|++.||++.-+...-|-       ..|.+.+.+.+ .+..|++|+.+|+|+|+..|           .|.+.++++.||
T Consensus       378 emn~~fgrd~~yvstiglsqia~aqflhv~~pr~wincgqagplgwtipaalgv~~a-----------dp~r~vvalsgd  446 (592)
T COG3960         378 EMNKAFGRDVCYVTTIGLSQIAAAQFLHVFKPRHWINCGQAGPLGWTIPAALGVCAA-----------DPKRNVVAISGD  446 (592)
T ss_pred             HHHhhcCCceeEEEeccHHHHhhhhhhhhcCCcceeecCccCCcccccchhhceeec-----------CCCCceEEeecC
Confidence            366678876654322221       24666666655 46679999999999999988           899999999999


Q ss_pred             cccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccc----------------------cCchhhhccccCCCcEE
Q 013928          234 GTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRAT----------------------SDPQIYKKGPAFGMPGF  291 (434)
Q Consensus       234 Ga~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~----------------------~~~d~~~~a~a~Gi~~~  291 (434)
                      =.|+.  ..|+|...+++++|-|+|+.||.| ++...+.|+                      ...|-.+.++++|++.+
T Consensus       447 ydfqf--mieelavgaq~k~pyihv~vnnay-lglirqaqr~f~mdy~v~laf~nin~~~~~gygvdhv~v~eglgckai  523 (592)
T COG3960         447 YDFQF--LIEELAVGAQFKIPYIHVLVNNAY-LGLIRQAQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAI  523 (592)
T ss_pred             chHHH--HHHHHhhhhcccCceEEEEecchH-HHHHHHHHhcCCccceeeehhhccCCccccccCccceeehhccCceeE
Confidence            99986  489999999999999999999986 222222111                      12456678899999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCC
Q 013928          292 HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA  334 (434)
Q Consensus       292 ~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~~  334 (434)
                      +|-  ++.++..++.+|.....+..-|++||+..-|....++.
T Consensus       524 rv~--~p~e~a~af~~a~~lm~eh~vpvvve~ilervtnismg  564 (592)
T COG3960         524 RVF--KPEDIAPAFEQAKALMAQHRVPVVVEVILERVTNISMG  564 (592)
T ss_pred             Eec--ChHHhhHHHHHHHHHHHhcCCCeeeehHHHHhhccccc
Confidence            997  56688899998888888889999999998887776654

>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]

Probab=98.85  E-value=6e-09  Score=108.32  Aligned_cols=118  Identities=19%  Similarity=0.242  Sum_probs=87.3

Q ss_pred             CCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCC-eEEEEEcCCccCcccc
Q 013928          192 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWAIGMSH  270 (434)
Q Consensus       192 ~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vI~VV~NN~y~is~~~  270 (434)
                      ..+|++|+.+|+++|+++|           .++++|+.|+|||++++-  .+++.++.+|+|| +||+++|++|.|..-.
T Consensus       412 ~~wgsIG~svga~lG~a~a-----------~~e~rvilfiGDGs~qlT--vQeiStmir~gl~~~if~~NN~GYTIE~~I  478 (561)
T KOG1184|consen  412 MQWGSIGWSVGATLGYAQA-----------APEKRVILFIGDGSFQLT--VQEISTMIRWGLKPIIFLINNGGYTIEVEI  478 (561)
T ss_pred             EEEeeccccchhhhhhhhc-----------cCCceEEEEecCccceee--HHHHHHHHhcCCCcEEEEEeCCceEEEEee
Confidence            4468999999999999999           678999999999999986  8999999999999 6777777788776543


Q ss_pred             ccc----ccCchhhhccccCCCcE-----EEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEe
Q 013928          271 LRA----TSDPQIYKKGPAFGMPG-----FHVDGMDVLKVREVAKEAIERARRGEGPTLVECETY  326 (434)
Q Consensus       271 ~~~----~~~~d~~~~a~a~Gi~~-----~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~  326 (434)
                      +..    ..+.++.++.++||..-     .+|-  ...++..+.+.+..  ...+++.+|||+..
T Consensus       479 H~~~Yn~I~~Wd~~~l~~afg~~~gk~~~~~v~--~~~e~~~~~~~~~~--~~~~~i~liEv~l~  539 (561)
T KOG1184|consen  479 HDGPYNDIQNWDYTALLEAFGAGEGKYETHKVR--TEEELVEAIKDATF--EKNDKIRLIEVILP  539 (561)
T ss_pred             cCCCccccccchHHHHHHhhcCccceeEEeeec--cchHHHHHHhhhhh--cccCceEEEEEecC
Confidence            331    12467888888988643     2332  22355555554432  24578999999763

>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]

Probab=98.81  E-value=1.4e-07  Score=94.18  Aligned_cols=119  Identities=19%  Similarity=0.152  Sum_probs=92.3

Q ss_pred             cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccc-cccchHHHHHHHHHHcCCCeEEEEEcCC-ccCcc
Q 013928          191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGT-CNNGQFFECLNMAALWKLPIVFVVENNL-WAIGM  268 (434)
Q Consensus       191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa-~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~  268 (434)
                      ....+..|-..++|.|+.+|           .++..||++.|||. +..|  ...|.-+.+.+.+|++||.||+ |+.+.
T Consensus        66 ~~~hs~~gra~a~atGik~A-----------~~~l~Viv~gGDG~~~dIG--~~~l~h~~~Rn~dit~iv~DNevYgnTg  132 (294)
T COG1013          66 PWVHSLHGRAAAVATGIKLA-----------NPALSVIVIGGDGDAYDIG--GNHLIHALRRNHDITYIVVDNEVYGNTG  132 (294)
T ss_pred             CceeeccCcchhhHHHHHHh-----------ccCCeEEEEecchhHhhhh--hHHHHHHHHcCCCeEEEEECCeecccCC
Confidence            44566778999999999999           56778999999995 5688  8899999999999999999996 54433


Q ss_pred             cccccc-----------------cCchhhhccccCCCcEE-EEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEe
Q 013928          269 SHLRAT-----------------SDPQIYKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVECETY  326 (434)
Q Consensus       269 ~~~~~~-----------------~~~d~~~~a~a~Gi~~~-~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~  326 (434)
                      .+...+                 ...|+..++.++|.+++ ++.--++.++.+.+++|+    +.+||.||++.+.
T Consensus       133 gQ~S~tTp~G~~t~t~p~Gk~~~~k~d~~~la~a~G~~yVAr~~~~~~~~l~~~i~kA~----~~~Gps~I~v~sP  204 (294)
T COG1013         133 GQASPTTPKGAKTKTTPYGKRSEKKKDPGLLAMAAGATYVARASVGDPKDLTEKIKKAA----EHKGPSFIDVLSP  204 (294)
T ss_pred             CccCCCCCCCceeeecCCCCCcCCCCCHHHHHHHCCCCeEEEecccCHHHHHHHHHHHH----hccCCeEEEEecC
Confidence            221111                 12378888999999876 777777888888777666    4569999999753

>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes

Probab=98.52  E-value=4.7e-06  Score=85.01  Aligned_cols=97  Identities=13%  Similarity=0.105  Sum_probs=72.7

Q ss_pred             ceEEEEeCcccc-ccchHHHHHHHHHHcCCCeEEEEEcCC-ccCccccc----------------ccccCchhhhccccC
Q 013928          225 HVTLAFFGDGTC-NNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHL----------------RATSDPQIYKKGPAF  286 (434)
Q Consensus       225 ~~vv~~~GDGa~-~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~~~----------------~~~~~~d~~~~a~a~  286 (434)
                      ..||++.|||.. ..|  ...|.-+...+.+|++||.||. |+.+..+.                ......|+..++.++
T Consensus       152 ~~v~v~gGDG~~ydIG--~~~l~ha~~r~~ni~~iv~DNe~Y~nTGgQ~S~tTp~Ga~t~tsp~Gk~~~kkd~~~ia~a~  229 (365)
T cd03377         152 KSVWIIGGDGWAYDIG--YGGLDHVLASGENVNILVLDTEVYSNTGGQASKATPLGAVAKFAAAGKRTGKKDLGMIAMSY  229 (365)
T ss_pred             cceEEEecchhhhccc--hhhHHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCcCccCCCCCCCCCcCHHHHHHHc
Confidence            579999999965 688  7889889999999988888886 55432111                011235788889999


Q ss_pred             CCcEE-EEeC-CCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928          287 GMPGF-HVDG-MDVLKVREVAKEAIERARRGEGPTLVECETYR  327 (434)
Q Consensus       287 Gi~~~-~VdG-~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R  327 (434)
                      |.+++ ++.- .++.++.+++++|+    +.+||.+|++.+.-
T Consensus       230 g~~YVA~~s~~~~~~~~~~~i~eA~----~~~Gps~I~v~sPC  268 (365)
T cd03377         230 GNVYVAQIALGANDNQTLKAFREAE----AYDGPSLIIAYSPC  268 (365)
T ss_pred             CCCEEEEEecccCHHHHHHHHHHHh----cCCCCEEEEEEccC
Confidence            99877 6654 48888888777766    46899999997643

This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra

>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]

Probab=98.27  E-value=9.5e-07  Score=95.05  Aligned_cols=172  Identities=18%  Similarity=0.222  Sum_probs=117.0

Q ss_pred             eecccccCCCChHHHHHHHHHhcCCCC--EEEccCcchHHH-HHcCCCHHHH--------------HHHHhcCCCCCccC
Q 013928          114 KMFGFVHLYNGQEAVSTGFIKLLKKED--SVVSTYRDHVHA-LSKGVPARAV--------------MSELFGKATGCCRG  176 (434)
Q Consensus       114 k~~G~~h~~~GqEa~~~g~~~~L~~~D--~v~~~yR~~~~~-La~G~~~~~i--------------~~el~g~~~g~~~G  176 (434)
                      +..|++.++.|+--+.+....++++-|  +++-.-.||+.. +..+..++..              |.+|+.+-.-+ . 
T Consensus        58 r~lGHwGt~pg~s~~Y~H~nr~i~~~d~~~~yv~GpGHg~~~~~~~~yLeGtys~~yp~~s~d~~Gm~rL~~qFs~P-g-  135 (793)
T COG3957          58 RLLGHWGTQPGLSFIYAHLNRLISKYDANMAYVMGPGHGGPAIVANTYLEGTYSEMYPDISQDEEGLNRLFKQFSFP-G-  135 (793)
T ss_pred             hhcccccCCCCchhhhhhhhHHHHhhCcceEEEecCCCCcceeeeccccCCccccccccccccHHHHHHHHHhccCC-C-
Confidence            346888889999999999988888644  444455567643 2111111111              33333332211 1 


Q ss_pred             CCCCcccccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHH----HcC
Q 013928          177 QGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAA----LWK  252 (434)
Q Consensus       177 ~ggs~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~----~~~  252 (434)
                       |-..|+.....+.....|.||+++..|.|+++-           +||.++.|++|||....|.    +.++.    -++
T Consensus       136 -Gi~SH~~petPGsIhEGGeLGy~l~ha~gAa~d-----------~Pdli~~~vvGDGeaetgp----latsWhs~kf~n  199 (793)
T COG3957         136 -GIGSHVAPETPGSIHEGGELGYALSHAYGAAFD-----------NPDLIVACVVGDGEAETGP----LATSWHSNKFLN  199 (793)
T ss_pred             -CcccccCCCCCCccCcCcchhHHHHHHHHhhcC-----------CCCcEEEEEecccccccCc----cccccccccccC
Confidence             225677766667777789999999999999987           8999999999999777664    22221    122


Q ss_pred             CC----eEEEEEcCCccCcccccccc-cCchhhhccccCCCcEEEEeCCCHHHHHH
Q 013928          253 LP----IVFVVENNLWAIGMSHLRAT-SDPQIYKKGPAFGMPGFHVDGMDVLKVRE  303 (434)
Q Consensus       253 LP----vI~VV~NN~y~is~~~~~~~-~~~d~~~~a~a~Gi~~~~VdG~D~~av~~  303 (434)
                      .+    ++=|..=|+|.|+-++.-.+ +..++...+++||+.-+.|+|.|+.++..
T Consensus       200 p~~dGavLPIL~lNGykI~npT~lar~s~~el~~~f~G~Gy~p~~veg~d~~d~hq  255 (793)
T COG3957         200 PARDGAVLPILHLNGYKIENPTVLARISDEELKALFEGYGYEPVFVEGADPADMHQ  255 (793)
T ss_pred             ccccCceeeEEEecceeccCceeeeecChHHHHHHHhhCCCceeEecCCChHHhhh
Confidence            22    66677779999987765444 34678899999999999999988887443

>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]

Probab=98.00  E-value=3.3e-05  Score=82.89  Aligned_cols=120  Identities=26%  Similarity=0.284  Sum_probs=87.5

Q ss_pred             CCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccc-cchHHHHHHHHHHcCCCeEEEEEcCCcc
Q 013928          187 EHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCN-NGQFFECLNMAALWKLPIVFVVENNLWA  265 (434)
Q Consensus       187 ~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~-~G~~~EaLn~A~~~~LPvI~VV~NN~y~  265 (434)
                      +++....+-.||.++++|-|+.++           . .+++|+++|||.|. .|  ..+|..|..-+.+++++|.+|.+.
T Consensus       420 P~~~~d~t~~mGssig~a~g~~~~-----------~-~k~~va~iGDsTF~HsG--i~~l~nAV~n~~~~~~vvLdN~~t  485 (640)
T COG4231         420 PLNTVDTTTMMGSSIGIAGGLSFA-----------S-TKKIVAVIGDSTFFHSG--ILALINAVYNKANILVVVLDNRTT  485 (640)
T ss_pred             Ccchhhhhhhccchhhhccccccc-----------c-CCceEEEeccccccccC--cHHHHHHHhcCCCeEEEEEeccch
Confidence            344445556788899999999987           2 37899999999986 66  667999999999999998888754


Q ss_pred             Ccccccc-c----------ccCchhhhccccCCCcEE-EEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEE
Q 013928          266 IGMSHLR-A----------TSDPQIYKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVECE  324 (434)
Q Consensus       266 is~~~~~-~----------~~~~d~~~~a~a~Gi~~~-~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~  324 (434)
                      --|-.+. .          ....++.+..++.|+..+ +||-.|+.++.+++++|    ++..+|.+|.++
T Consensus       486 AMTGgQp~pg~~~~~~g~~~~~i~iee~~r~~Gv~~v~~vdp~~~~~~~~~~kea----le~~gpsViiak  552 (640)
T COG4231         486 AMTGGQPHPGTGVAAEGTKSTAIVIEEVVRAMGVEDVETVDPYDVKELSEAIKEA----LEVPGPSVIIAK  552 (640)
T ss_pred             hccCCCCCCCcccccCCCccceeEhhHhhhhcCceeeeccCCcchHHHHHHHHHH----hcCCCceEEEEc
Confidence            3221110 0          112467788999999877 55657777777766655    467889999774

>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]

Probab=97.42  E-value=0.00024  Score=75.54  Aligned_cols=110  Identities=24%  Similarity=0.250  Sum_probs=73.7

Q ss_pred             cchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCC-eEEEEEcCCccCcc--cc------
Q 013928          200 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWAIGM--SH------  270 (434)
Q Consensus       200 glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vI~VV~NN~y~is~--~~------  270 (434)
                      .++.|+|++.|            ..+.++.++||=|+-.-  ...|-+......| +|+|++||+=+|--  +.      
T Consensus       427 ~vSTA~Gi~~a------------~~~ptv~liGDLS~lhD--~NgLl~~k~~~~~ltIvv~NNnGGgIF~~Lp~~~~~~~  492 (566)
T COG1165         427 TVSTALGIARA------------TQKPTVALIGDLSFLHD--LNGLLLLKKVPQPLTIVVVNNNGGGIFSLLPQAQSEPV  492 (566)
T ss_pred             hHHHHhhhhhh------------cCCceEEEEechhhhhc--cchHhhcCCCCCCeEEEEEeCCCceeeeeccCCCCcch
Confidence            36779999987            24569999999998532  2246666677777 56666677645421  11      


Q ss_pred             -ccc--c-cCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCC
Q 013928          271 -LRA--T-SDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR  329 (434)
Q Consensus       271 -~~~--~-~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~  329 (434)
                       +..  + ..-||...++.||+.+.+++.-  .++..    +++.+-...|-+|||++|.|-.
T Consensus       493 fe~~F~tPh~ldF~~la~~y~l~y~~~~s~--~~l~~----~~~~~~~~~g~~viEvkt~r~~  549 (566)
T COG1165         493 FERLFGTPHGLDFAHLAATYGLEYHRPQSW--DELGE----ALDQAWRRSGTTVIEVKTDRSD  549 (566)
T ss_pred             HHHhcCCCCCCCHHHHHHHhCccccccCcH--HHHHH----HHhhhccCCCcEEEEEecChhH
Confidence             011  1 2458999999999999998854  34444    5555545567899999997643

>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric

Probab=97.37  E-value=0.0012  Score=77.19  Aligned_cols=97  Identities=16%  Similarity=0.176  Sum_probs=72.6

Q ss_pred             ceEEEEeCcccc-ccchHHHHHHHHHHcCCCeEEEEEcCC-ccCccccc----------------ccccCchhhhccccC
Q 013928          225 HVTLAFFGDGTC-NNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHL----------------RATSDPQIYKKGPAF  286 (434)
Q Consensus       225 ~~vv~~~GDGa~-~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~~~----------------~~~~~~d~~~~a~a~  286 (434)
                      ..||++.|||.. ..|  ...|.-+...+.+|.+||.||. |+.+..+.                ......|+..++.++
T Consensus       952 ~sv~~~~GDG~~~diG--~~~l~~~~~r~~~v~~i~~dne~Y~nTggQ~S~~tp~g~~t~~~~~g~~~~kkd~~~~a~~~ 1029 (1165)
T TIGR02176       952 KSVWIIGGDGWAYDIG--YGGLDHVLASGKDVNVLVMDTEVYSNTGGQSSKATPTGAIAKFAAAGKRTSKKDLGMMAMTY 1029 (1165)
T ss_pred             ceeEEEecchhhhccC--ccchHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCccccCCCCCCCCCcCHHHHHHHC
Confidence            469999999965 588  7789999999999999998886 44432110                011235788889999


Q ss_pred             CCcEE-EEe-CCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928          287 GMPGF-HVD-GMDVLKVREVAKEAIERARRGEGPTLVECETYR  327 (434)
Q Consensus       287 Gi~~~-~Vd-G~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R  327 (434)
                      |.+++ ++. |.++.++.+++++|+    +.+||.+|++.+.-
T Consensus      1030 g~~yvA~~~~~~~~~~~~~~~~~A~----~~~G~s~i~~~~pC 1068 (1165)
T TIGR02176      1030 GYVYVAQVSMGANMQQTLKAFREAE----AYDGPSIVIAYSPC 1068 (1165)
T ss_pred             CCCEEEEEecccCHHHHHHHHHHHH----cCCCCEEEEEECCC
Confidence            99877 776 568888888777665    57899999997653

This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.

>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional

Probab=97.34  E-value=0.0008  Score=78.11  Aligned_cols=120  Identities=17%  Similarity=0.088  Sum_probs=80.4

Q ss_pred             cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccc-cchHHHHHHHHHHcCCCeEEEEEcCCc-cCcc
Q 013928          191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCN-NGQFFECLNMAALWKLPIVFVVENNLW-AIGM  268 (434)
Q Consensus       191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~-~G~~~EaLn~A~~~~LPvI~VV~NN~y-~is~  268 (434)
                      ...+..||.....++|.+.+           ..++.||+++|||.|. .|  .-+|.-|..-+.+++++|.+|.. +++.
T Consensus       464 ~~~~~~MG~~g~~~~G~a~~-----------~~~~~v~a~iGDgTf~HSG--~~al~~AV~~~~nit~~IL~N~~tAMTG  530 (1159)
T PRK13030        464 TTGLTQMGGEGVDWIGHAPF-----------TETKHVFQNLGDGTYFHSG--SLAIRQAVAAGANITYKILYNDAVAMTG  530 (1159)
T ss_pred             cceeeccCccchhhceeccc-----------cCCCCEEEEeccchhhhcC--HHHHHHHHhcCCCeEEEEEeCCcccccC
Confidence            44567899999999999987           3356799999999986 77  55899999999999888888873 2222


Q ss_pred             cccccccCchhhh---ccccCCCcEEEEeCCCHHH-----HH--------HHHHHHHHHHHccCCCEEEEEE
Q 013928          269 SHLRATSDPQIYK---KGPAFGMPGFHVDGMDVLK-----VR--------EVAKEAIERARRGEGPTLVECE  324 (434)
Q Consensus       269 ~~~~~~~~~d~~~---~a~a~Gi~~~~VdG~D~~a-----v~--------~a~~~Al~~ar~~~gP~lIev~  324 (434)
                      .+ ......++.+   ..++.|+..+.|-..|+..     +.        +.+....+..++.+|+++|...
T Consensus       531 gQ-p~~g~i~v~~i~~~~~a~Gv~~v~vvsddp~~~~~~~~~~~~~v~~r~~l~~vq~~l~~~~GvsViI~~  601 (1159)
T PRK13030        531 GQ-PVDGSISVPQIARQVEAEGVSRIVVVSDEPEKYRGHHLPAGVTVHHRDELDAVQRELRETPGVTVLIYD  601 (1159)
T ss_pred             CC-CCCCCCCHHHHHHHHHhCCCcEEEEecCChhhccccccCCCcccccHHHHHHHHHHHhcCCCcEEEEEc
Confidence            11 1111234444   7779999888765455544     22        2222222223367789888763

>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated

Probab=97.19  E-value=0.0019  Score=75.02  Aligned_cols=120  Identities=21%  Similarity=0.135  Sum_probs=84.9

Q ss_pred             CCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccc-cchHHHHHHHHHHcCCCeEEEEEcCCc-cCccc
Q 013928          192 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCN-NGQFFECLNMAALWKLPIVFVVENNLW-AIGMS  269 (434)
Q Consensus       192 ~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~-~G~~~EaLn~A~~~~LPvI~VV~NN~y-~is~~  269 (434)
                      ..+..||.....++|.+.+           ..++.||+++|||.|. .|  .-+|.-|..-+.+++++|..|.. +++..
T Consensus       478 ~~~~~MG~eg~~~~G~a~f-----------~~~~hv~a~iGDgTffHSG--~~al~~AV~~~~nit~~IL~N~~vAMTGg  544 (1165)
T PRK09193        478 STFTQMGGEGVPWIGQAPF-----------TDEKHVFQNLGDGTYFHSG--LLAIRAAVAAGVNITYKILYNDAVAMTGG  544 (1165)
T ss_pred             CeeeccCCcchhhceeccc-----------cCCCcEEEEeccccchhcC--HHHHHHHHhcCCCeEEEEEeCCcccccCC
Confidence            5567899999999998876           3356799999999985 77  66799999999998888887762 33322


Q ss_pred             cc--ccccCchhhhccccCCCcEEEEeCCCHHHHHHH--------------HHHHHHHHHccCCCEEEEEE
Q 013928          270 HL--RATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV--------------AKEAIERARRGEGPTLVECE  324 (434)
Q Consensus       270 ~~--~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a--------------~~~Al~~ar~~~gP~lIev~  324 (434)
                      +.  ...+..++....++.|+.-+.|-..|+......              ++...+..|+..|+++|...
T Consensus       545 Q~~~g~~~~~~i~~~~~a~GV~~v~vv~ddp~~~~~~~~~~~~v~~~~R~~l~~vq~~lr~~~GvsViI~~  615 (1165)
T PRK09193        545 QPVDGGLSVPQITRQLAAEGVKRIVVVTDEPEKYDGVARLAPGVTVHHRDELDAVQRELREIPGVTVLIYD  615 (1165)
T ss_pred             CCCCCCcchhhHHHHHHhCCCCEEEEeCCChhhhhhccccCcCcccccHHHHHHHHHHHhcCCCcEEEEEc
Confidence            11  112346788889999998887765666655333              33333333467889888763

>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional

Probab=96.95  E-value=0.003  Score=73.34  Aligned_cols=120  Identities=19%  Similarity=0.132  Sum_probs=79.6

Q ss_pred             cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccc-cchHHHHHHHHHHcCCCeEEEEEcCCc-cCcc
Q 013928          191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCN-NGQFFECLNMAALWKLPIVFVVENNLW-AIGM  268 (434)
Q Consensus       191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~-~G~~~EaLn~A~~~~LPvI~VV~NN~y-~is~  268 (434)
                      ..++..||......+|.+-+           ..++.||+++|||.|. .|  .-+|..|..-+.+++++|.+|.. +++.
T Consensus       491 ~~~~~~MGgeg~~~~G~a~f-----------~~~~hv~aniGDgTffHSG--~~alr~AV~~~~nit~kIL~N~avAMTG  557 (1186)
T PRK13029        491 TEGFSQMGGEGVAWIGQMPF-----------SRRRHVFQNLGDGTYFHSG--LLAIRQAIAAGVNITYKILYNDAVAMTG  557 (1186)
T ss_pred             cceeeccCcchhhheeeccc-----------CCCCCEEEEeccccchhcC--HHHHHHHHhcCCCEEEEEEeCcchhccC
Confidence            34567899999999998877           3356799999999986 67  66799999999998888887762 3322


Q ss_pred             ccc--ccccCchhhhccccCCCcEEEEeCCCHHHHH--------------HHHHHHHHHHHccCCCEEEEE
Q 013928          269 SHL--RATSDPQIYKKGPAFGMPGFHVDGMDVLKVR--------------EVAKEAIERARRGEGPTLVEC  323 (434)
Q Consensus       269 ~~~--~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~--------------~a~~~Al~~ar~~~gP~lIev  323 (434)
                      .+.  .....+.+....++.|+.-+.|-.+|+..+.              +.+....+..|+.+|+++|..
T Consensus       558 gQp~~G~~~v~~i~~~~~a~GV~~v~vv~d~p~~~~~~~~~~~gv~~~~R~~l~~vq~~lr~~~GvsViI~  628 (1186)
T PRK13029        558 GQPVDGVLTVPQIARQVHAEGVRRIVVVTDEPGKYRGVARLPAGVTVHHRDELDAVQRELREVPGVSVLIY  628 (1186)
T ss_pred             CCCCCCcCCHHHHHHHHHhCCccEEEEeCCCccccccccccCCccccccHHHHHHHHHHHhcCCCcEEEEE
Confidence            111  1111234444779999987766444454442              333333333346788888876

>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes

Probab=96.21  E-value=0.037  Score=48.98  Aligned_cols=105  Identities=18%  Similarity=0.118  Sum_probs=64.5

Q ss_pred             cchhhHHHHHHHHHHHhhhhhcCCCceEEEEe-CccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCch
Q 013928          200 GIPVATGAAFTSKYRREVLKEADCDHVTLAFF-GDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQ  278 (434)
Q Consensus       200 glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~-GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d  278 (434)
                      ...+|.|++++           +. ..+++.. |.|..+.   .+.+..|...++|+|+|+-..+.........+  ..+
T Consensus        47 a~~~A~G~a~~-----------~~-~~v~~~~~gpg~~~~---~~~l~~a~~~~~Pvl~i~~~~~~~~~~~~~~q--~~~  109 (154)
T cd06586          47 AAGAAAGYARA-----------GG-PPVVIVTSGTGLLNA---INGLADAAAEHLPVVFLIGARGISAQAKQTFQ--SMF  109 (154)
T ss_pred             HHHHHHHHHHh-----------hC-CEEEEEcCCCcHHHH---HHHHHHHHhcCCCEEEEeCCCChhhhccCccc--ccC
Confidence            34556677666           22 3333333 8887643   67888888999999999966552211111111  223


Q ss_pred             hhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEE
Q 013928          279 IYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC  323 (434)
Q Consensus       279 ~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev  323 (434)
                      ....++.+..-...+  +++.++.+.+.+|++.+....||++|++
T Consensus       110 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~a~~~~gPv~l~i  152 (154)
T cd06586         110 DLGMYRSIPEANISS--PSPAELPAGIDHAIRTAYASQGPVVVRL  152 (154)
T ss_pred             HHHHHHHhhheEEEe--CCHHHHHHHHHHHHHHHhcCCCCEEEEc
Confidence            334445443333344  5667788888889888877789999986

Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca

>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX

Probab=96.15  E-value=0.055  Score=49.48  Aligned_cols=93  Identities=14%  Similarity=0.003  Sum_probs=65.3

Q ss_pred             CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHH
Q 013928          224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE  303 (434)
Q Consensus       224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~  303 (434)
                      -.++++..|=|.++.   .-++..|..-++|+|+|.-+.....-.  .......|..++++.+--...+|+  ++.++.+
T Consensus        64 ~~v~~~t~GpG~~n~---~~~l~~A~~~~~Pvl~I~g~~~~~~~~--~~~~q~~d~~~~~~~~tk~~~~v~--~~~~~~~  136 (164)
T cd07039          64 LGVCLGSSGPGAIHL---LNGLYDAKRDRAPVLAIAGQVPTDELG--TDYFQEVDLLALFKDVAVYNETVT--SPEQLPE  136 (164)
T ss_pred             CEEEEECCCCcHHHH---HHHHHHHHhcCCCEEEEecCCcccccC--CCCCcccCHHHHHHHhhcEEEEeC--CHHHHHH
Confidence            345666668887764   558889999999999998655422111  111112355666666666666776  6678889


Q ss_pred             HHHHHHHHHHccCCCEEEEE
Q 013928          304 VAKEAIERARRGEGPTLVEC  323 (434)
Q Consensus       304 a~~~Al~~ar~~~gP~lIev  323 (434)
                      ++++|++.+....||+.|++
T Consensus       137 ~i~~A~~~a~~~~GPV~l~i  156 (164)
T cd07039         137 LLDRAIRTAIAKRGVAVLIL  156 (164)
T ss_pred             HHHHHHHHHhcCCCCEEEEe
Confidence            99999998888889999998

Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ

>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor

Probab=96.00  E-value=0.052  Score=49.66  Aligned_cols=93  Identities=16%  Similarity=0.101  Sum_probs=63.2

Q ss_pred             eEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHHH
Q 013928          226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVA  305 (434)
Q Consensus       226 ~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~  305 (434)
                      ++++..|=|.++.   .-+|..|...+.|+|+|+-.-...... ........|...+++.+.....++.  ++.++..++
T Consensus        67 v~~~~~GpG~~n~---~~~l~~A~~~~~Pvl~i~g~~~~~~~~-~~~~q~~~d~~~~~~~~~k~~~~v~--~~~~~~~~~  140 (172)
T PF02776_consen   67 VVIVTSGPGATNA---LTGLANAYADRIPVLVITGQRPSAGEG-RGAFQQEIDQQSLFRPVTKWSYRVT--SPDDLPEAL  140 (172)
T ss_dssp             EEEEETTHHHHTT---HHHHHHHHHTT-EEEEEEEESSGGGTT-TTSTTSSTHHHHHHGGGSSEEEEEC--SGGGHHHHH
T ss_pred             EEEeecccchHHH---HHHHhhcccceeeEEEEecccchhhhc-ccccccchhhcchhccccchhcccC--CHHHHHHHH
Confidence            4444456666553   557888899999999988765422221 1111213466777888887788887  455888889


Q ss_pred             HHHHHHH-HccCCCEEEEEE
Q 013928          306 KEAIERA-RRGEGPTLVECE  324 (434)
Q Consensus       306 ~~Al~~a-r~~~gP~lIev~  324 (434)
                      ++|++.+ ....+|+.|++-
T Consensus       141 ~~A~~~a~~~~~gPv~l~ip  160 (172)
T PF02776_consen  141 DRAFRAATSGRPGPVYLEIP  160 (172)
T ss_dssp             HHHHHHHHHCSTSEEEEEEE
T ss_pred             HHHHHHhccCCCccEEEEcC
Confidence            9999988 667899999984

It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....

>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins

Probab=95.86  E-value=0.09  Score=46.91  Aligned_cols=89  Identities=18%  Similarity=0.126  Sum_probs=57.7

Q ss_pred             EEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHH
Q 013928          228 LAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKE  307 (434)
Q Consensus       228 v~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~  307 (434)
                      ++..|=|.++.   ..+|..|...++|+|+|.-+....-......|  ..|....++.+-....+++  ++.++.+.+.+
T Consensus        64 ~~~~gpG~~n~---~~~l~~A~~~~~Pll~i~~~~~~~~~~~~~~q--~~d~~~~~~~~~~~~~~i~--~~~~~~~~i~~  136 (155)
T cd07035          64 LVTSGPGLTNA---VTGLANAYLDSIPLLVITGQRPTAGEGRGAFQ--EIDQVALFRPITKWAYRVT--SPEEIPEALRR  136 (155)
T ss_pred             EEcCCCcHHHH---HHHHHHHHhhCCCEEEEeCCCccccccCCccc--ccCHHHHHHHHhceEEEcC--CHHHHHHHHHH
Confidence            33335665543   67899999999999999865441111111111  1344444444444455664  67799999999


Q ss_pred             HHHHHHcc-CCCEEEEE
Q 013928          308 AIERARRG-EGPTLVEC  323 (434)
Q Consensus       308 Al~~ar~~-~gP~lIev  323 (434)
                      |++.+... ++|+.|++
T Consensus       137 A~~~a~~~~~gPv~l~i  153 (155)
T cd07035         137 AFRIALSGRPGPVALDL  153 (155)
T ss_pred             HHHHhcCCCCCcEEEEe
Confidence            99999877 79999986

Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio

>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit

Probab=95.70  E-value=0.13  Score=46.78  Aligned_cols=108  Identities=13%  Similarity=0.125  Sum_probs=67.8

Q ss_pred             cccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHH-HcCCCeEEEEEcCCccCcccccccccC
Q 013928          198 GEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAA-LWKLPIVFVVENNLWAIGMSHLRATSD  276 (434)
Q Consensus       198 G~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~-~~~LPvI~VV~NN~y~is~~~~~~~~~  276 (434)
                      +.+..+|.|..++            ..+.++|+.+=|-.   ...-.|..|. ..+.|+|+|+-.-+. .+.....+...
T Consensus        44 e~aa~~aAg~~~~------------~~~~~v~~~~sG~g---n~~~~l~~a~~~~~~Pvl~i~g~rg~-~~~~~~~q~~~  107 (157)
T TIGR03845        44 EEGVGICAGAYLA------------GKKPAILMQSSGLG---NSINALASLNKTYGIPLPILASWRGV-YKEKIPAQIPM  107 (157)
T ss_pred             HHHHHHHHHHHHh------------cCCcEEEEeCCcHH---HHHHHHHHHHHcCCCCEEEEEeccCC-CCCCCccccch
Confidence            4445556665544            34567888877733   3577888888 999999999944431 11111111111


Q ss_pred             chhh-hccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEE
Q 013928          277 PQIY-KKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECE  324 (434)
Q Consensus       277 ~d~~-~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~  324 (434)
                      ..+. ......+++...++  +++++ .++.+|++.+.+.++|+.|-+.
T Consensus       108 g~~~~~~l~~~~i~~~~i~--~~e~~-~~i~~A~~~a~~~~gPv~il~~  153 (157)
T TIGR03845       108 GRATPKLLDTLGIPYTIPR--EPEEA-KLIEKAISDAYENSRPVAALLD  153 (157)
T ss_pred             hhhhHHHHHHcCCCeEEeC--CHHHH-HHHHHHHHHHHhCCCCEEEEEe
Confidence            1111 11234566778886  47788 9999999999999999998763

This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).

>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins

Probab=95.52  E-value=0.11  Score=47.38  Aligned_cols=93  Identities=16%  Similarity=0.155  Sum_probs=61.6

Q ss_pred             eEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCcc-Ccccc-ccc-c--cC-chhhhccccCCCcEEEEeCCCHH
Q 013928          226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA-IGMSH-LRA-T--SD-PQIYKKGPAFGMPGFHVDGMDVL  299 (434)
Q Consensus       226 ~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~-is~~~-~~~-~--~~-~d~~~~a~a~Gi~~~~VdG~D~~  299 (434)
                      ++++..|=|.++.   .-+|..|..-+.|+|+|+-+.... .+... ..+ .  .. .|...+++.+--...+|.  ++.
T Consensus        62 v~~~t~GpG~~n~---~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~tk~~~~v~--~~~  136 (162)
T cd07038          62 ALVTTYGVGELSA---LNGIAGAYAEHVPVVHIVGAPSTKAQASGLLLHHTLGDGDFDVFLKMFEEITCAAARLT--DPE  136 (162)
T ss_pred             EEEEcCCccHHHH---HHHHHHHHHcCCCEEEEecCCCccccccccceeecccccchHHHHHHHHhheeEEEEeC--CHH
Confidence            3344447776663   558888999999999998654311 11100 000 0  01 134566666666666775  667


Q ss_pred             HHHHHHHHHHHHHHccCCCEEEEE
Q 013928          300 KVREVAKEAIERARRGEGPTLVEC  323 (434)
Q Consensus       300 av~~a~~~Al~~ar~~~gP~lIev  323 (434)
                      ++...+++|++.+..++||+.|++
T Consensus       137 ~i~~~v~~A~~~a~s~~gPV~l~i  160 (162)
T cd07038         137 NAAEEIDRVLRTALRESRPVYIEI  160 (162)
T ss_pred             HHHHHHHHHHHHHHHCCCCEEEEc
Confidence            888999999999998889999987

Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many

>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins

Probab=95.34  E-value=0.15  Score=45.84  Aligned_cols=91  Identities=27%  Similarity=0.228  Sum_probs=60.0

Q ss_pred             eEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCcc-CcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHH
Q 013928          226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA-IGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV  304 (434)
Q Consensus       226 ~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~-is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a  304 (434)
                      +++...|-|..+.   ...|-.|...+.|+|+|+-+.... .+.+...+ ...+....++. .+...++.  ++.++.+.
T Consensus        67 v~~~~~gpG~~n~---~~~l~~a~~~~~P~v~i~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~--~~~~~~~~  139 (160)
T cd07034          67 AMTATSGPGLNLM---AEALYLAAGAELPLVIVVAQRPGPSTGLPKPDQ-SDLMAARYGGH-PWPVLAPS--SVQEAFDL  139 (160)
T ss_pred             EEEeeCcchHHHH---HHHHHHHHhCCCCEEEEEeeCCCCCCCCCCcCc-HHHHHHHhCCC-CEEEEeCC--CHHHHHHH
Confidence            6677778888764   567888888899999998654321 11100011 11223333333 35555554  78899999


Q ss_pred             HHHHHHHHHccCCCEEEEE
Q 013928          305 AKEAIERARRGEGPTLVEC  323 (434)
Q Consensus       305 ~~~Al~~ar~~~gP~lIev  323 (434)
                      +++|++.++.+++|++|..
T Consensus       140 ~~~A~~~a~~~~~Pv~l~~  158 (160)
T cd07034         140 ALEAFELAEKYRLPVIVLS  158 (160)
T ss_pred             HHHHHHHHHHhCCCEEEEc
Confidence            9999999999889999865

Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th

>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated

Probab=94.26  E-value=0.28  Score=50.92  Aligned_cols=167  Identities=18%  Similarity=0.183  Sum_probs=100.9

Q ss_pred             CCChHHHHHHHHHhcCCCCEEEccCcchHHHHHcCCCHHHHHHHHhcCCCCCccCCCCCcccccCCCcccCCcccccccc
Q 013928          122 YNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGI  201 (434)
Q Consensus       122 ~~GqEa~~~g~~~~L~~~D~v~~~yR~~~~~La~G~~~~~i~~el~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~gl  201 (434)
                      -.|.||++-|+..+=  =| ++..|-         ++|..-+.|.+.+....   .++.+.-..          .=-..+
T Consensus         7 ~~GNeAiA~ga~~ag--~~-~~a~YP---------ITPsTei~e~la~~~~~---~~~~~vq~E----------~E~aA~   61 (376)
T PRK08659          7 LQGNEACAEGAIAAG--CR-FFAGYP---------ITPSTEIAEVMARELPK---VGGVFIQME----------DEIASM   61 (376)
T ss_pred             eehHHHHHHHHHHhC--CC-EEEEcC---------CCChHHHHHHHHHhhhh---hCCEEEEeC----------chHHHH
Confidence            389999877654431  23 555665         35555555554432111   011110000          112346


Q ss_pred             hhhHHHHHHHHHHHhhhhhcCCCceEEEE-eCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCc--ccccccccCch
Q 013928          202 PVATGAAFTSKYRREVLKEADCDHVTLAF-FGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIG--MSHLRATSDPQ  278 (434)
Q Consensus       202 p~AvGaA~A~k~~~~~~~~~~~d~~vv~~-~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is--~~~~~~~~~~d  278 (434)
                      .+|+|+++|             +.++++. .|-|=..|   +|.+.+++-..+|+|+++.+.. +-+  .++.......+
T Consensus        62 ~~a~GAs~a-------------G~Ra~TaTSg~Gl~lm---~E~~~~a~~~e~P~Viv~~~R~-gp~tg~p~~~~q~D~~  124 (376)
T PRK08659         62 AAVIGASWA-------------GAKAMTATSGPGFSLM---QENIGYAAMTETPCVIVNVQRG-GPSTGQPTKPAQGDMM  124 (376)
T ss_pred             HHHHhHHhh-------------CCCeEeecCCCcHHHH---HHHHHHHHHcCCCEEEEEeecC-CCCCCCCCCcCcHHHH
Confidence            778899988             3344444 45554445   8899999999999888887765 332  23222211222


Q ss_pred             hhhccccCC-CcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCC
Q 013928          279 IYKKGPAFG-MPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSL  333 (434)
Q Consensus       279 ~~~~a~a~G-i~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~  333 (434)
                      . .+..++| .+.+.+.-.|+.++++....|++.+.+.+-|++|-..++  -+|+.
T Consensus       125 ~-~~~~~hgd~~~ivl~p~~~QEa~d~~~~Af~lAE~~~~PViv~~D~~--lsh~~  177 (376)
T PRK08659        125 Q-ARWGTHGDHPIIALSPSSVQECFDLTIRAFNLAEKYRTPVIVLADEV--VGHMR  177 (376)
T ss_pred             H-HhcccCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechH--hhCCc
Confidence            2 2333444 455677778999999999999999988889999998883  66764

>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated

Probab=94.17  E-value=0.29  Score=50.38  Aligned_cols=114  Identities=19%  Similarity=0.146  Sum_probs=79.4

Q ss_pred             cchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchh
Q 013928          200 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQI  279 (434)
Q Consensus       200 glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~  279 (434)
                      .+.+|+|++++             +.++++.+-++++.-  .+|.|.+|+-..+|+++++.+-. +-++.. .+....|.
T Consensus        60 A~~~a~GAs~a-------------G~Ra~taTSg~Gl~l--m~E~l~~a~~~e~P~v~v~v~R~-~p~~g~-t~~eq~D~  122 (352)
T PRK07119         60 AINMVYGAAAT-------------GKRVMTSSSSPGISL--KQEGISYLAGAELPCVIVNIMRG-GPGLGN-IQPSQGDY  122 (352)
T ss_pred             HHHHHHHHHhh-------------CCCEEeecCcchHHH--HHHHHHHHHHccCCEEEEEeccC-CCCCCC-CcchhHHH
Confidence            46778999988             556788887777764  28999999999999888877754 332211 12111233


Q ss_pred             h--hccccCC-CcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCC
Q 013928          280 Y--KKGPAFG-MPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHS  332 (434)
Q Consensus       280 ~--~~a~a~G-i~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs  332 (434)
                      .  .+..++| .+.+...-.|+.++++-...|++-+.+.+-|+++-..++  -+|+
T Consensus       123 ~~~~~~~ghgd~~~~vl~p~~~qEa~d~~~~Af~lAE~~~~PViv~~D~~--lsh~  176 (352)
T PRK07119        123 FQAVKGGGHGDYRLIVLAPSSVQEMVDLTMLAFDLADKYRNPVMVLGDGV--LGQM  176 (352)
T ss_pred             HHHHhcCCCCCcceEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEcchh--hhCc
Confidence            2  1222322 345566777999999999999999988889999998884  3665

>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins

Probab=94.15  E-value=0.29  Score=44.82  Aligned_cols=95  Identities=9%  Similarity=0.034  Sum_probs=57.1

Q ss_pred             ceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCC----HHH
Q 013928          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMD----VLK  300 (434)
Q Consensus       225 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D----~~a  300 (434)
                      .++++..|=|.++.   .-++..|..-+.|+|+|+-+-..........|  ..|....++.+--...+|...+    ...
T Consensus        62 gv~~~t~GpG~~n~---~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~q--~~d~~~l~~~vtk~~~~v~~~~~~~~~~~  136 (162)
T cd07037          62 VAVVCTSGTAVANL---LPAVVEAYYSGVPLLVLTADRPPELRGTGANQ--TIDQVGLFGDYVRWSVDLPPPEDDDDLWY  136 (162)
T ss_pred             EEEEECCchHHHHH---hHHHHHHHhcCCCEEEEECCCCHHhcCCCCCc--ccchhhhccceeeEEEecCCcccchhHHH
Confidence            34555557777663   56888999999999999865431111111111  1244445554444445554221    122


Q ss_pred             HHHHHHHHHHHHHccC-CCEEEEEE
Q 013928          301 VREVAKEAIERARRGE-GPTLVECE  324 (434)
Q Consensus       301 v~~a~~~Al~~ar~~~-gP~lIev~  324 (434)
                      +.+.+++|+..++.+. ||++|++-
T Consensus       137 ~~~~i~~A~~~A~~~~~GPv~l~iP  161 (162)
T cd07037         137 LLRLANRAVLEALSAPPGPVHLNLP  161 (162)
T ss_pred             HHHHHHHHHHHHhCCCCCCEEEecc
Confidence            6778888888888764 99999873

Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim

>PRK08611 pyruvate oxidase; Provisional

Probab=92.93  E-value=0.79  Score=50.08  Aligned_cols=94  Identities=14%  Similarity=0.121  Sum_probs=64.8

Q ss_pred             CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHH
Q 013928          224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE  303 (434)
Q Consensus       224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~  303 (434)
                      -.++++..|=|.++.   .-++..|..-+.|+|+|.-.-..........|  ..|...+++.+-....+|+  ++.++..
T Consensus        69 ~gv~~~t~GPG~~N~---l~gla~A~~~~~Pvl~ItG~~~~~~~~~~~~q--~~d~~~l~~~itk~~~~v~--~~~~~~~  141 (576)
T PRK08611         69 IGVCLSIGGPGAIHL---LNGLYDAKMDHVPVLALAGQVTSDLLGTDFFQ--EVNLEKMFEDVAVYNHQIM--SAENLPE  141 (576)
T ss_pred             ceEEEECCCCcHHHH---HHHHHHHhhcCCCEEEEecCCcccccCCCCcc--ccCHHHHhhcccceeEEeC--CHHHHHH
Confidence            345666668888874   45788999999999999865432211111111  2355666666655555665  6778889


Q ss_pred             HHHHHHHHHHccCCCEEEEEE
Q 013928          304 VAKEAIERARRGEGPTLVECE  324 (434)
Q Consensus       304 a~~~Al~~ar~~~gP~lIev~  324 (434)
                      ++.+|+..+....||+.|++-
T Consensus       142 ~l~~A~~~A~~~~GPV~l~iP  162 (576)
T PRK08611        142 IVNQAIRTAYEKKGVAVLTIP  162 (576)
T ss_pred             HHHHHHHHHhhCCCCEEEEeC
Confidence            999999888888899999984

>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase

Probab=92.71  E-value=0.38  Score=49.73  Aligned_cols=114  Identities=13%  Similarity=0.129  Sum_probs=71.6

Q ss_pred             ccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCcccccc-chHHHHHHHHHHcCCCeEEEEEcCCccCcccccccc-
Q 013928          197 IGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNN-GQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRAT-  274 (434)
Q Consensus       197 lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~-G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~-  274 (434)
                      =|.++++|.|+.+|            +.++.++++=-.++.. -...-+|.....|++|++++|-.-++ .+.....|. 
T Consensus        35 E~~av~iaaG~~la------------tG~~~~v~mQnSGlGn~vN~l~SL~~~~~y~iP~l~~i~~RG~-~g~~depqh~  101 (361)
T TIGR03297        35 EGAAVGLAAGAYLA------------TGKRAAVYMQNSGLGNAVNPLTSLADTEVYDIPLLLIVGWRGE-PGVHDEPQHV  101 (361)
T ss_pred             chHHHHHHHHHHHh------------cCCccEEEEecCchhhhhhHHHhhccccccCcCeeEEEecCCC-CCCCCCchhh
Confidence            47788899999988            2344455542222211 00122333356799999999876652 222211221 


Q ss_pred             -cCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEE
Q 013928          275 -SDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECE  324 (434)
Q Consensus       275 -~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~  324 (434)
                       ...-...+.+++|+++..++. +..+....+..|++.+.+.++|+.|-+.
T Consensus       102 ~~G~~t~~lL~~~~i~~~~~~~-~~~~~~~~~~~a~~~~~~~~~p~a~l~~  151 (361)
T TIGR03297       102 KQGRITLSLLDALEIPWEVLST-DNDEALAQIERALAHALATSRPYALVVR  151 (361)
T ss_pred             HHhHHHHHHHHHcCCCEEECCC-ChHHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence             122234567789999999953 4457778889999999999999888773

This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A

>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit

Probab=92.21  E-value=0.69  Score=50.57  Aligned_cols=111  Identities=20%  Similarity=0.227  Sum_probs=74.4

Q ss_pred             cchhhHHHHHHHHHHHhhhhhcCCCceEEE-EeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCch
Q 013928          200 GIPVATGAAFTSKYRREVLKEADCDHVTLA-FFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQ  278 (434)
Q Consensus       200 glp~AvGaA~A~k~~~~~~~~~~~d~~vv~-~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d  278 (434)
                      .+.+|+|+++|             +.++++ ..|-|=.-+   .|.|.+|.-..+|+|+++.|.. +.++....+....|
T Consensus       249 A~~~a~GAs~a-------------G~Ra~taTSg~Gl~lm---~E~l~~a~~~~~P~Vi~~~~R~-gpstg~~t~~eq~D  311 (562)
T TIGR03710       249 AINMAIGASYA-------------GARAMTATSGPGFALM---TEALGLAGMTETPLVIVDVQRG-GPSTGLPTKTEQSD  311 (562)
T ss_pred             HHHHHHhHHhc-------------CCceeecCCCCChhHh---HHHHhHHHhccCCEEEEEcccC-CCCCCCCCCccHHH
Confidence            46778888888             333444 444443334   8999999999999888887776 55442111111123


Q ss_pred             h-hhccccCC-CcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928          279 I-YKKGPAFG-MPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR  327 (434)
Q Consensus       279 ~-~~~a~a~G-i~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R  327 (434)
                      + ..+.-++| .+.+.+...|+.++++...+|++.+.+..-|+++-...+.
T Consensus       312 ~~~~~~~~hgd~~~ivl~p~~~qEa~d~~~~Af~lAe~~~~PViv~~D~~l  362 (562)
T TIGR03710       312 LLFALYGGHGEFPRIVLAPGSPEECFYLAIEAFNLAEKYQTPVIVLSDQYL  362 (562)
T ss_pred             HHHHhcCCCCCcCceEEcCCCHHHHHHHHHHHHHHHHHhcCCEEEEechHH
Confidence            2 22333222 3445666779999999999999999999999999998874

The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.

>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed

Probab=91.87  E-value=1.2  Score=46.58  Aligned_cols=111  Identities=16%  Similarity=0.098  Sum_probs=73.0

Q ss_pred             cchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchh
Q 013928          200 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQI  279 (434)
Q Consensus       200 glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~  279 (434)
                      .+.+|+|+++|             +.++++.+-=++++-  .+|.|.+|+-..+|+|+++.|-.  ..++........|+
T Consensus        61 A~~~aiGAs~a-------------GaRa~TaTSg~Gl~l--m~E~l~~aa~~~lPiVi~~~~R~--~p~~~~~~~~q~D~  123 (390)
T PRK08366         61 AMAACIGASAA-------------GARAFTATSAQGLAL--MHEMLHWAAGARLPIVMVDVNRA--MAPPWSVWDDQTDS  123 (390)
T ss_pred             HHHHHHHHHhh-------------CCCeEeeeCcccHHH--HhhHHHHHHhcCCCEEEEEeccC--CCCCCCCcchhhHH
Confidence            46778999988             344555554444442  28999999999999888877553  22222211111232


Q ss_pred             hhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCC
Q 013928          280 YKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRG  330 (434)
Q Consensus       280 ~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~g  330 (434)
                      .. ..--||  +..-..|+.++++-...|++.+.+..-|+++-...++...
T Consensus       124 ~~-~~d~g~--i~~~~~~~QEa~d~t~~Af~lAE~~~~PViv~~Dg~~~sh  171 (390)
T PRK08366        124 LA-QRDTGW--MQFYAENNQEVYDGVLMAFKVAETVNLPAMVVESAFILSH  171 (390)
T ss_pred             HH-HhhcCE--EEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEecCccccc
Confidence            21 122255  4444578999999999999999989999999987776543

>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase

Probab=91.86  E-value=1  Score=48.88  Aligned_cols=95  Identities=16%  Similarity=0.143  Sum_probs=64.5

Q ss_pred             ceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHH
Q 013928          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV  304 (434)
Q Consensus       225 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a  304 (434)
                      .++++..|=|.++.   .-++..|..-+.|||+|+-......-..........|...+++.+-....+|+  ++.++.+.
T Consensus        67 gv~~~t~GPG~~N~---~~gia~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~vtk~~~~v~--~~~~~~~~  141 (554)
T TIGR03254        67 GVCLTVSAPGFLNG---LTALANATTNCFPMIMISGSSERHIVDLQQGDYEEMDQLAAAKPFAKAAYRVL--RAEDIGIG  141 (554)
T ss_pred             EEEEEccCccHHhH---HHHHHHHHhcCCCEEEEEccCCccccccCCCCcchhhHHHHhhhhheeEEEcC--CHHHHHHH
Confidence            45666668888874   55788999999999999864432210000011112355666676666667776  67788889


Q ss_pred             HHHHHHHHHcc-CCCEEEEEE
Q 013928          305 AKEAIERARRG-EGPTLVECE  324 (434)
Q Consensus       305 ~~~Al~~ar~~-~gP~lIev~  324 (434)
                      +.+|++.+..+ .||+.|++-
T Consensus       142 i~rA~~~A~~~~pGPV~l~iP  162 (554)
T TIGR03254       142 IARAIRTAVSGRPGGVYLDLP  162 (554)
T ss_pred             HHHHHHHHhcCCCCcEEEEcC
Confidence            99999988875 489999984

In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.

>PRK07064 hypothetical protein; Provisional

Probab=91.80  E-value=1.2  Score=48.19  Aligned_cols=95  Identities=20%  Similarity=0.143  Sum_probs=63.3

Q ss_pred             ceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHH
Q 013928          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE  303 (434)
Q Consensus       225 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~  303 (434)
                      .++++..|=|.++.   .-++..|..-+.|||+|+-+-. ..++..........|..++++.+--...+|+  ++.++..
T Consensus        68 ~v~~~t~GpG~~N~---~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~~~~~~~~tk~~~~v~--~~~~~~~  142 (544)
T PRK07064         68 GVALTSTGTGAGNA---AGALVEALTAGTPLLHITGQIETPYLDQDLGYIHEAPDQLTMLRAVSKAAFRVR--SAETALA  142 (544)
T ss_pred             eEEEeCCCCcHHHH---HHHHHHHHhcCCCEEEEeCCCCcccccCCCcccccccCHHHHhhhhcceEEEeC--CHHHHHH
Confidence            45666678888874   5588899999999999986421 1111110000011355566665555566674  6778888


Q ss_pred             HHHHHHHHHHcc-CCCEEEEEE
Q 013928          304 VAKEAIERARRG-EGPTLVECE  324 (434)
Q Consensus       304 a~~~Al~~ar~~-~gP~lIev~  324 (434)
                      .+.+|++.+..+ .||+.|++-
T Consensus       143 ~i~~A~~~a~~~~~GPV~l~iP  164 (544)
T PRK07064        143 TIREAVRVALTAPTGPVSVEIP  164 (544)
T ss_pred             HHHHHHHHhccCCCCcEEEEeC
Confidence            999999888876 799999995

>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase

Probab=91.77  E-value=1.4  Score=48.08  Aligned_cols=93  Identities=22%  Similarity=0.209  Sum_probs=61.9

Q ss_pred             CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHH
Q 013928          224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVR  302 (434)
Q Consensus       224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~  302 (434)
                      -.++++..|=|.++.   .-+|..|..-+.|||+|.-.-. ..++.. ..|  ..|...+++.+--...+|.  ++.++.
T Consensus        65 ~gv~~~t~GPG~~N~---~~gla~A~~~~~Pvl~I~g~~~~~~~~~~-~~Q--~~d~~~l~~~vtk~~~~v~--~~~~~~  136 (579)
T TIGR03457        65 MSMVIGQNGPGVTNC---VTAIAAAYWAHTPVVIVTPEAGTKTIGLG-GFQ--EADQLPMFQEFTKYQGHVR--HPSRMA  136 (579)
T ss_pred             CEEEEECCCchHHHH---HHHHHHHhhcCCCEEEEeCCCccccCCCC-CCc--ccchhhhhhcceeEEEecC--CHHHHH
Confidence            345556668888873   4578899999999999973211 111110 011  1245555555544455564  677888


Q ss_pred             HHHHHHHHHHHccCCCEEEEEE
Q 013928          303 EVAKEAIERARRGEGPTLVECE  324 (434)
Q Consensus       303 ~a~~~Al~~ar~~~gP~lIev~  324 (434)
                      ..+++|++.+..++||+.|++-
T Consensus       137 ~~i~~A~~~A~~~~GPV~l~iP  158 (579)
T TIGR03457       137 EVLNRCFERAWREMGPAQLNIP  158 (579)
T ss_pred             HHHHHHHHHHhcCCCCEEEEeC
Confidence            9999999998888899999994

Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.

>PRK06112 acetolactate synthase catalytic subunit; Validated

Probab=91.72  E-value=1.3  Score=48.37  Aligned_cols=95  Identities=17%  Similarity=0.030  Sum_probs=63.4

Q ss_pred             CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHH
Q 013928          224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE  303 (434)
Q Consensus       224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~  303 (434)
                      -.++++..|=|+++.   .-+|..|-.-+.|||+|+-.-......  .......|...+++.+-....+|+  +++++..
T Consensus        75 ~gv~~~t~GpG~~N~---~~gl~~A~~~~~Pvl~I~G~~~~~~~~--~~~~Q~~d~~~l~~~vtk~~~~v~--~~~~~~~  147 (578)
T PRK06112         75 VAVVTAQNGPAATLL---VAPLAEALKASVPIVALVQDVNRDQTD--RNAFQELDHIALFQSCTKWVRRVT--VAERIDD  147 (578)
T ss_pred             CEEEEeCCCCcHHHH---HHHHHHHhhcCCCEEEEecCCccccCC--CCCccccChhhhhccccceEEEeC--CHHHHHH
Confidence            345666668888763   557888999999999998432211100  011112355566666665566665  5778888


Q ss_pred             HHHHHHHHHHcc-CCCEEEEEEE
Q 013928          304 VAKEAIERARRG-EGPTLVECET  325 (434)
Q Consensus       304 a~~~Al~~ar~~-~gP~lIev~t  325 (434)
                      .+.+|++.++.+ .||+.|++-.
T Consensus       148 ~i~~A~~~A~~~~~GPv~l~iP~  170 (578)
T PRK06112        148 YVDQAFTAATSGRPGPVVLLLPA  170 (578)
T ss_pred             HHHHHHHHHhhCCCCcEEEEcCH
Confidence            999999888887 4999999953

>PRK06457 pyruvate dehydrogenase; Provisional

Probab=91.71  E-value=1.4  Score=47.74  Aligned_cols=95  Identities=11%  Similarity=0.013  Sum_probs=62.2

Q ss_pred             CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHH
Q 013928          224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE  303 (434)
Q Consensus       224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~  303 (434)
                      -.++++..|=|.++.   .-++..|-.-+.|||+|+-.-....-.  .......|...+++.+-....+|.  ++.++..
T Consensus        65 pgv~~~t~GPG~~N~---l~~l~~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~l~~~vtk~~~~v~--~~~~~~~  137 (549)
T PRK06457         65 PSACMGTSGPGSIHL---LNGLYDAKMDHAPVIALTGQVESDMIG--HDYFQEVNLTKLFDDVAVFNQILI--NPENAEY  137 (549)
T ss_pred             CeEEEeCCCCchhhh---HHHHHHHHhcCCCEEEEecCCCccccC--CCcccccchhhhhccceeEEEEeC--CHHHHHH
Confidence            345566678888874   558889999999999998543211100  111112244555554444444554  6678888


Q ss_pred             HHHHHHHHHHccCCCEEEEEEE
Q 013928          304 VAKEAIERARRGEGPTLVECET  325 (434)
Q Consensus       304 a~~~Al~~ar~~~gP~lIev~t  325 (434)
                      .+++|++.+....||+.|++-.
T Consensus       138 ~i~~A~~~a~~~~GPV~l~iP~  159 (549)
T PRK06457        138 IIRRAIREAISKRGVAHINLPV  159 (549)
T ss_pred             HHHHHHHHHhcCCCCEEEEeCH
Confidence            9999998888888999999953

>PRK07525 sulfoacetaldehyde acetyltransferase; Validated

Probab=91.36  E-value=1.6  Score=47.83  Aligned_cols=92  Identities=18%  Similarity=0.188  Sum_probs=60.7

Q ss_pred             ceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCc-cCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHH
Q 013928          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLW-AIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE  303 (434)
Q Consensus       225 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y-~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~  303 (434)
                      .++++..|=|.++.   .-++..|..-+.|||+|+-.-.. .++.. ..|  ..|...+++.+--...+|  .++.++..
T Consensus        70 gv~~~t~GPG~~n~---~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~-~~q--~~d~~~l~~~~tk~~~~i--~~~~~~~~  141 (588)
T PRK07525         70 GMVIGQNGPGITNF---VTAVATAYWAHTPVVLVTPQAGTKTIGQG-GFQ--EAEQMPMFEDMTKYQEEV--RDPSRMAE  141 (588)
T ss_pred             EEEEEcCCccHHHH---HHHHHHHhhcCCCEEEEeCCCCcccCCCC-CCc--ccchhhhhhhheeEEEEC--CCHHHHHH
Confidence            45666668888863   45788899999999999832110 11100 011  124445555543344555  46778889


Q ss_pred             HHHHHHHHHHccCCCEEEEEE
Q 013928          304 VAKEAIERARRGEGPTLVECE  324 (434)
Q Consensus       304 a~~~Al~~ar~~~gP~lIev~  324 (434)
                      .+++|++.++...||+.|++-
T Consensus       142 ~i~rA~~~A~~~~GPV~i~iP  162 (588)
T PRK07525        142 VLNRVFDKAKRESGPAQINIP  162 (588)
T ss_pred             HHHHHHHHHhcCCCCEEEEcC
Confidence            999999999988999999994

>PRK06456 acetolactate synthase catalytic subunit; Reviewed

Probab=91.31  E-value=1.4  Score=48.02  Aligned_cols=92  Identities=16%  Similarity=0.095  Sum_probs=62.1

Q ss_pred             eEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHHH
Q 013928          226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVA  305 (434)
Q Consensus       226 ~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~  305 (434)
                      ++++..|=|.++.   .-++..|-.-+.|||+|.-.-....-.....|  ..|...+++.+--...+|+  +++++...+
T Consensus        71 v~~~t~GpG~~N~---l~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~q--~~d~~~i~~~~tk~~~~v~--~~~~~~~~l  143 (572)
T PRK06456         71 VCTATSGPGTTNL---VTGLITAYWDSSPVIAITGQVPRSVMGKMAFQ--EADAMGVFENVTKYVIGIK--RIDEIPQWI  143 (572)
T ss_pred             EEEeCCCCCHHHH---HHHHHHHHhhCCCEEEEecCCCccccCCCCcc--ccchhhhhhccceeEEEeC--CHHHHHHHH
Confidence            4445578888873   55788999999999999854321111000111  1245556666555566664  778888999


Q ss_pred             HHHHHHHHccC-CCEEEEEE
Q 013928          306 KEAIERARRGE-GPTLVECE  324 (434)
Q Consensus       306 ~~Al~~ar~~~-gP~lIev~  324 (434)
                      .+|++.+..+. ||+.|++-
T Consensus       144 ~~A~~~A~~~~~GPV~l~iP  163 (572)
T PRK06456        144 KNAFYIATTGRPGPVVIDIP  163 (572)
T ss_pred             HHHHHHHhcCCCCcEEEecC
Confidence            99999888864 99999995

>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=91.27  E-value=1.2  Score=48.65  Aligned_cols=96  Identities=20%  Similarity=0.168  Sum_probs=67.6

Q ss_pred             CCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHH
Q 013928          222 DCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKV  301 (434)
Q Consensus       222 ~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av  301 (434)
                      +.-.++++..|-|+++-   .-.|..|..-+.|+|+|.-.=.  ............|...+++.+--..++|.  +++++
T Consensus        63 GkpgV~~~tsGPGatN~---~tgla~A~~d~~Pll~itGqv~--~~~~g~~afQe~D~~~l~~p~tk~~~~v~--~~~~i  135 (550)
T COG0028          63 GKPGVCLVTSGPGATNL---LTGLADAYMDSVPLLAITGQVP--TSLIGTDAFQEVDQVGLFRPITKYNFEVR--SPEDI  135 (550)
T ss_pred             CCCEEEEECCCCcHHHH---HHHHHHHHhcCCCEEEEeCCcc--ccccCcchhhhcchhhHhhhhheeEEEeC--CHHHH
Confidence            44568899999999873   4478899999999998874211  11111111112366666666655566676  67899


Q ss_pred             HHHHHHHHHHHHccC-CCEEEEEE
Q 013928          302 REVAKEAIERARRGE-GPTLVECE  324 (434)
Q Consensus       302 ~~a~~~Al~~ar~~~-gP~lIev~  324 (434)
                      .+.+++|++.+..++ ||++|++-
T Consensus       136 p~~i~~Af~~A~sgrpGpv~i~iP  159 (550)
T COG0028         136 PEVVARAFRIALSGRPGPVVVDLP  159 (550)
T ss_pred             HHHHHHHHHHHhcCCCceEEEEcC
Confidence            999999999999887 99999984

>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed

Probab=91.24  E-value=1  Score=46.77  Aligned_cols=115  Identities=21%  Similarity=0.237  Sum_probs=76.5

Q ss_pred             cchhhHHHHHHHHHHHhhhhhcCCCceEEEEe-CccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCcccccccccCc
Q 013928          200 GIPVATGAAFTSKYRREVLKEADCDHVTLAFF-GDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLRATSDP  277 (434)
Q Consensus       200 glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~-GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~~~~~~~~~  277 (434)
                      .+.+|+|+++|             +.++++.+ |-|=..|   .|.+.+++-..+|+|+++.+-. -+.+.++.....+.
T Consensus        59 A~~~a~GAs~a-------------G~Ra~taTSg~G~~lm---~E~~~~a~~~e~P~V~~~~~R~GpstG~p~~~~q~D~  122 (375)
T PRK09627         59 GISVALGASMS-------------GVKSMTASSGPGISLK---AEQIGLGFIAEIPLVIVNVMRGGPSTGLPTRVAQGDV  122 (375)
T ss_pred             HHHHHHHHHhh-------------CCCEEeecCCchHHHH---hhHHHHHHhccCCEEEEEeccCCCcCCCCCccchHHH
Confidence            46778899988             33444444 5554445   8899999999999888777653 12333332221111


Q ss_pred             hhhhccccCC-CcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCC
Q 013928          278 QIYKKGPAFG-MPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSL  333 (434)
Q Consensus       278 d~~~~a~a~G-i~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~  333 (434)
                       ...+...+| .+.+.+.-.|+.++++....|++.+.+.+-|++|-...+  -+|+.
T Consensus       123 -~~~~~~~hgd~~~ivl~p~~~qEa~d~t~~Af~lAE~~~~PViv~~D~~--lsh~~  176 (375)
T PRK09627        123 -NQAKNPTHGDFKSIALAPGSLEEAYTETVRAFNLAERFMTPVFLLLDET--VGHMY  176 (375)
T ss_pred             -HHHhcCCCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHcCceEEecchH--HhCCe
Confidence             222333333 344567778999999999999999998999999988872  36653

>PRK07979 acetolactate synthase 3 catalytic subunit; Validated

Probab=91.14  E-value=1.6  Score=47.58  Aligned_cols=95  Identities=20%  Similarity=0.200  Sum_probs=65.1

Q ss_pred             CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHH
Q 013928          224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE  303 (434)
Q Consensus       224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~  303 (434)
                      -.++++..|=|.++.   .-++..|..-+.|||+|+-.-....-.  .......|...+++.+-....+|+  +++++..
T Consensus        68 ~gv~~~t~GPG~~n~---l~gi~~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~l~~~~tk~~~~v~--~~~~~~~  140 (574)
T PRK07979         68 VGVVLVTSGPGATNA---ITGIATAYMDSIPLVVLSGQVATSLIG--YDAFQECDMVGISRPVVKHSFLVK--QTEDIPQ  140 (574)
T ss_pred             ceEEEECCCccHhhh---HHHHHHHhhcCCCEEEEECCCChhccC--CCCCceecHHHHhhcccceEEEeC--CHHHHHH
Confidence            346677778888863   457888999999999998543211100  111112355566666655566775  6789999


Q ss_pred             HHHHHHHHHHccC-CCEEEEEEE
Q 013928          304 VAKEAIERARRGE-GPTLVECET  325 (434)
Q Consensus       304 a~~~Al~~ar~~~-gP~lIev~t  325 (434)
                      .+++|++.+..+. ||+.|++-.
T Consensus       141 ~l~~A~~~A~~~~~GPv~l~iP~  163 (574)
T PRK07979        141 VLKKAFWLAASGRPGPVVVDLPK  163 (574)
T ss_pred             HHHHHHHHHccCCCCcEEEEcCh
Confidence            9999999888874 999999954

>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed

Probab=91.10  E-value=1.6  Score=47.31  Aligned_cols=94  Identities=27%  Similarity=0.281  Sum_probs=63.9

Q ss_pred             CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCc-cCcccccccccCchhhhccccCCCcEEEEeCCCHHHHH
Q 013928          224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLW-AIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVR  302 (434)
Q Consensus       224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y-~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~  302 (434)
                      -.++++..|=|.++.   .-++..|..-+.|||+|.-.-.. .++.. ..|  ..|...+++.+--...+|+  ++.++.
T Consensus        64 ~gv~~~t~GpG~~n~---~~~l~~A~~~~~Pvl~i~g~~~~~~~~~~-~~q--~~d~~~~~~~~tk~~~~v~--~~~~~~  135 (548)
T PRK08978         64 VGVCIATSGPGATNL---ITGLADALLDSVPVVAITGQVSSPLIGTD-AFQ--EIDVLGLSLACTKHSFLVQ--SLEELP  135 (548)
T ss_pred             CEEEEECCCCcHHHH---HHHHHHHhhcCCCEEEEecCCCccccCCC-CCc--ccchhccccCceeeEEEEC--CHHHHH
Confidence            345666678888873   56888999999999999853321 11110 111  2345556665555566775  678899


Q ss_pred             HHHHHHHHHHHcc-CCCEEEEEEE
Q 013928          303 EVAKEAIERARRG-EGPTLVECET  325 (434)
Q Consensus       303 ~a~~~Al~~ar~~-~gP~lIev~t  325 (434)
                      ..+++|++.++.+ .||+.|++-.
T Consensus       136 ~~i~~A~~~A~~~~~GPV~l~iP~  159 (548)
T PRK08978        136 EIMAEAFEIASSGRPGPVLVDIPK  159 (548)
T ss_pred             HHHHHHHHHHhcCCCCcEEEecCh
Confidence            9999999888886 4999999853

>PRK09259 putative oxalyl-CoA decarboxylase; Validated

Probab=91.01  E-value=1.6  Score=47.67  Aligned_cols=94  Identities=17%  Similarity=0.222  Sum_probs=63.3

Q ss_pred             ceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccC-cccccccccCchhhhccccCCCcEEEEeCCCHHHHHH
Q 013928          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAI-GMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE  303 (434)
Q Consensus       225 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~i-s~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~  303 (434)
                      .++++..|=|.++.   .-++..|..-+.|||+|+-.-.... .... ......|...+++.+--...+|+  ++.++..
T Consensus        74 gv~~~t~GPG~~N~---l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~-~~~q~~d~~~~~~~~tk~s~~v~--~~~~~~~  147 (569)
T PRK09259         74 GVCLTVSAPGFLNG---LTALANATTNCFPMIMISGSSEREIVDLQQ-GDYEELDQLNAAKPFCKAAFRVN--RAEDIGI  147 (569)
T ss_pred             EEEEEcCCccHHHH---HHHHHHHHhcCCCEEEEEccCCcccccccC-CCccccchhhhhhhheeeeEEcC--CHHHHHH
Confidence            45566668888874   4578899999999999985432111 0000 01112355556666555566665  6789999


Q ss_pred             HHHHHHHHHHcc-CCCEEEEEE
Q 013928          304 VAKEAIERARRG-EGPTLVECE  324 (434)
Q Consensus       304 a~~~Al~~ar~~-~gP~lIev~  324 (434)
                      .+.+|++.+..+ .||+.|++-
T Consensus       148 ~i~~A~~~A~~~~~GPV~l~iP  169 (569)
T PRK09259        148 GVARAIRTAVSGRPGGVYLDLP  169 (569)
T ss_pred             HHHHHHHHhhhCCCCcEEEEeC
Confidence            999999999876 589999985

>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains

Probab=90.85  E-value=0.95  Score=43.83  Aligned_cols=113  Identities=20%  Similarity=0.146  Sum_probs=66.7

Q ss_pred             cchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchh
Q 013928          200 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQI  279 (434)
Q Consensus       200 glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~  279 (434)
                      .+.+++|++++           + .+...+.-|-|=..+   .|.|.+++-..+|+|+++.|-. +-++....+....|+
T Consensus        48 A~~~~~GAs~a-----------G-~ra~t~ts~~Gl~lm---~e~l~~a~~~~~P~V~~~~~R~-g~~~g~~~~~~q~D~  111 (230)
T PF01855_consen   48 AMEAAIGASAA-----------G-ARAMTATSGPGLNLM---AEPLYWAAGTELPIVIVVVQRA-GPSPGLSTQPEQDDL  111 (230)
T ss_dssp             HHHHHHHHHHT-----------T---EEEEEECCHHHHH---CCCHHHHHHTT--EEEEEEEB----SSSB--SB-SHHH
T ss_pred             HHHHHHHHHhc-----------C-CceEEeecCCccccc---HhHHHHHHHcCCCEEEEEEECC-CCCCCCcCcCChhHH
Confidence            35678888887           2 233445555554333   6789999999999888887654 222201111111232


Q ss_pred             hhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCC
Q 013928          280 YKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHS  332 (434)
Q Consensus       280 ~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs  332 (434)
                      . .++.+||.++.  ..|+.++++-...|++.+.+..-|+++-...++. .|+
T Consensus       112 ~-~~~d~~~~vl~--p~~~QEa~d~~~~A~~lAe~~~~PViv~~Dg~~~-sh~  160 (230)
T PF01855_consen  112 M-AARDSGWIVLA--PSSPQEAYDMTLIAFNLAEKYQTPVIVLFDGFLC-SHS  160 (230)
T ss_dssp             H-HTTTSS-EEEE----SHHHHHHHHHHHHHHHHHHTSEEEEEEECCCC-TC-
T ss_pred             H-HHHhcCeEEEe--CCCHHHHHHHHHHHHHHHHHHCCCEEEEechhhh-cCc
Confidence            2 22356666554  4588899999999999999999999998888765 354

This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....

>PRK07524 hypothetical protein; Provisional

Probab=90.81  E-value=2.1  Score=46.24  Aligned_cols=96  Identities=15%  Similarity=0.119  Sum_probs=64.8

Q ss_pred             ceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCc-cCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHH
Q 013928          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLW-AIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE  303 (434)
Q Consensus       225 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y-~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~  303 (434)
                      .++++..|=|.++.   .-++..|..-+.|||+|+-.... ..+..........|...+++.+-....+|+  ++.++.+
T Consensus        66 gv~~~t~GpG~~n~---~~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~~~~~~~d~~~l~~~~tk~~~~v~--~~~~~~~  140 (535)
T PRK07524         66 GVCFIITGPGMTNI---ATAMGQAYADSIPMLVISSVNRRASLGKGRGKLHELPDQRAMVAGVAAFSHTLM--SAEDLPE  140 (535)
T ss_pred             eEEEECCCccHHHH---HHHHHHHHhcCCCEEEEeCCCChhhcCCCCccccccccHHHHhhhhceeEEEeC--CHHHHHH
Confidence            45666678888864   55888999999999999853321 111100000111355666776666666665  6779999


Q ss_pred             HHHHHHHHHHcc-CCCEEEEEEE
Q 013928          304 VAKEAIERARRG-EGPTLVECET  325 (434)
Q Consensus       304 a~~~Al~~ar~~-~gP~lIev~t  325 (434)
                      .+.+|++.++.+ .||+.|++-.
T Consensus       141 ~l~~A~~~A~~~~~GPV~l~iP~  163 (535)
T PRK07524        141 VLARAFAVFDSARPRPVHIEIPL  163 (535)
T ss_pred             HHHHHHHHHhcCCCCcEEEEeCH
Confidence            999999999876 6999999853

>PRK06466 acetolactate synthase 3 catalytic subunit; Validated

Probab=90.68  E-value=2  Score=46.81  Aligned_cols=96  Identities=19%  Similarity=0.215  Sum_probs=65.0

Q ss_pred             CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHH
Q 013928          224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE  303 (434)
Q Consensus       224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~  303 (434)
                      -.++++..|=|.++.   .-++..|..-+.|||+|.-.-....-.....|  ..|...+++.+-....+|+  ++.++..
T Consensus        68 ~gv~~vt~GPG~~N~---l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~~q--~~d~~~l~~~itk~s~~v~--~~~~~~~  140 (574)
T PRK06466         68 TGVVLVTSGPGATNA---ITGIATAYMDSIPMVVLSGQVPSTLIGEDAFQ--ETDMVGISRPIVKHSFMVK--HASEIPE  140 (574)
T ss_pred             CEEEEECCCccHHHH---HHHHHHHHhcCCCEEEEecCCCccccCCCccc--ccchhhhhhccceeEEEcC--CHHHHHH
Confidence            345666678888873   55888999999999999854332111000111  2355566666555556665  6778889


Q ss_pred             HHHHHHHHHHcc-CCCEEEEEEEe
Q 013928          304 VAKEAIERARRG-EGPTLVECETY  326 (434)
Q Consensus       304 a~~~Al~~ar~~-~gP~lIev~t~  326 (434)
                      .+++|+..+..+ .||+.|++-..
T Consensus       141 ~~~rA~~~A~~~~~GPV~l~iP~D  164 (574)
T PRK06466        141 IIKKAFYIAQSGRPGPVVVDIPKD  164 (574)
T ss_pred             HHHHHHHHHhcCCCCcEEEEcCHh
Confidence            999999988877 49999999543

>PRK06725 acetolactate synthase 3 catalytic subunit; Validated

Probab=90.67  E-value=1.9  Score=47.12  Aligned_cols=95  Identities=20%  Similarity=0.251  Sum_probs=64.7

Q ss_pred             CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHH
Q 013928          224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE  303 (434)
Q Consensus       224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~  303 (434)
                      -.++++..|=|.++.   .-++..|-.-+.|||+|+-.-....  .........|...+++.+-....+|.  ++.++.+
T Consensus        78 ~gv~~~t~GpG~~N~---~~gla~A~~~~~Pvl~I~G~~~~~~--~~~~~~q~~d~~~l~~~itk~~~~v~--~~~~i~~  150 (570)
T PRK06725         78 VGVVFATSGPGATNL---VTGLADAYMDSIPLVVITGQVATPL--IGKDGFQEADVVGITVPVTKHNYQVR--DVNQLSR  150 (570)
T ss_pred             CeEEEECCCccHHHH---HHHHHHHhhcCcCEEEEecCCCccc--ccCCCCcccchhhhhhccceeEEEcC--CHHHHHH
Confidence            345666678888763   4578888899999999985332111  00111112356667776665566775  6789999


Q ss_pred             HHHHHHHHHHccC-CCEEEEEEE
Q 013928          304 VAKEAIERARRGE-GPTLVECET  325 (434)
Q Consensus       304 a~~~Al~~ar~~~-gP~lIev~t  325 (434)
                      .+++|+..++.+. ||+.|++-.
T Consensus       151 ~l~~A~~~A~s~~~GPV~l~iP~  173 (570)
T PRK06725        151 IVQEAFYIAESGRPGPVLIDIPK  173 (570)
T ss_pred             HHHHHHHHHhcCCCCcEEEcccc
Confidence            9999999998874 999999853

>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed

Probab=90.52  E-value=2.1  Score=47.15  Aligned_cols=93  Identities=23%  Similarity=0.304  Sum_probs=62.2

Q ss_pred             CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCc-cCcccccccccCchhhhccccCCCcEEEEeCCCHHHHH
Q 013928          224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLW-AIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVR  302 (434)
Q Consensus       224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y-~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~  302 (434)
                      -.++++..|=|.++.   .-+|-.|..-+.|||+|+-+-.. .++.   ......|...+++.+--...+|+  +++++.
T Consensus        86 ~gv~~~t~GPG~~n~---l~gl~~A~~d~~Pvl~i~G~~~~~~~~~---~~~Qe~d~~~~~~~vtk~~~~v~--~~~~i~  157 (616)
T PRK07418         86 VGVCFGTSGPGATNL---VTGIATAQMDSVPMVVITGQVPRPAIGT---DAFQETDIFGITLPIVKHSYVVR--DPSDMA  157 (616)
T ss_pred             CeEEEECCCccHHHH---HHHHHHHHhcCCCEEEEecCCCccccCC---CCcccccHHHHhhhcceeEEEeC--CHHHHH
Confidence            345566668988874   55788999999999999853321 1111   11112344555554444445565  677999


Q ss_pred             HHHHHHHHHHHccC-CCEEEEEE
Q 013928          303 EVAKEAIERARRGE-GPTLVECE  324 (434)
Q Consensus       303 ~a~~~Al~~ar~~~-gP~lIev~  324 (434)
                      .++.+|++.+..++ ||+.|++-
T Consensus       158 ~~l~~A~~~A~~~~~GPv~l~iP  180 (616)
T PRK07418        158 RIVAEAFHIASSGRPGPVLIDIP  180 (616)
T ss_pred             HHHHHHHHHHhcCCCCcEEEecc
Confidence            99999999998876 99999985

>PRK07586 hypothetical protein; Validated

Probab=90.47  E-value=1.8  Score=46.45  Aligned_cols=94  Identities=19%  Similarity=0.108  Sum_probs=62.5

Q ss_pred             ceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHH
Q 013928          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV  304 (434)
Q Consensus       225 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a  304 (434)
                      .++++..|=|.++.   .-.+..|..-+.|||+|.-.-....  ......-..|...+++.+--...+|.  ++.++.+.
T Consensus        66 gv~~~t~GPG~~N~---~~gl~~A~~~~~Pvl~i~G~~~~~~--~~~~~~q~~d~~~~~~~vtk~~~~v~--~~~~~~~~  138 (514)
T PRK07586         66 AATLLHLGPGLANG---LANLHNARRARTPIVNIVGDHATYH--RKYDAPLTSDIEALARPVSGWVRRSE--SAADVAAD  138 (514)
T ss_pred             EEEEecccHHHHHH---HHHHHHHHhcCCCEEEEecCCchhc--cCCCcccccchhhhhccccceeeecC--CHHHHHHH
Confidence            44556668887753   4577889999999999985432111  00011112355566666554555665  66788899


Q ss_pred             HHHHHHHHHcc-CCCEEEEEEE
Q 013928          305 AKEAIERARRG-EGPTLVECET  325 (434)
Q Consensus       305 ~~~Al~~ar~~-~gP~lIev~t  325 (434)
                      +++|++.+..+ .||+.|++-.
T Consensus       139 i~~A~~~a~~~~~GPV~l~iP~  160 (514)
T PRK07586        139 AAAAVAAARGAPGQVATLILPA  160 (514)
T ss_pred             HHHHHHHHhcCCCCcEEEEecc
Confidence            99999999887 6999999954

>PLN02470 acetolactate synthase

Probab=90.43  E-value=1.6  Score=47.88  Aligned_cols=95  Identities=25%  Similarity=0.249  Sum_probs=63.4

Q ss_pred             CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHH
Q 013928          224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE  303 (434)
Q Consensus       224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~  303 (434)
                      -.++++..|=|.++.   .-++..|-.-+.|||+|.-.-....  .........|...+++.+--...+|+  ++.++.+
T Consensus        77 ~gv~~~t~GPG~~N~---l~gia~A~~~~~Pvl~I~G~~~~~~--~~~~~~q~~d~~~l~~~~tk~~~~v~--~~~~i~~  149 (585)
T PLN02470         77 VGVCIATSGPGATNL---VTGLADALLDSVPLVAITGQVPRRM--IGTDAFQETPIVEVTRSITKHNYLVM--DVEDIPR  149 (585)
T ss_pred             CEEEEECCCccHHHH---HHHHHHHHhcCCcEEEEecCCChhh--cCCCcCcccchhhhhhhheEEEEEcC--CHHHHHH
Confidence            345667778888863   5578889999999999975332110  00011112344455555554555664  7789999


Q ss_pred             HHHHHHHHHHccC-CCEEEEEEE
Q 013928          304 VAKEAIERARRGE-GPTLVECET  325 (434)
Q Consensus       304 a~~~Al~~ar~~~-gP~lIev~t  325 (434)
                      .+.+|++.+..+. ||+.|++-.
T Consensus       150 ~l~~A~~~A~s~~~GPV~l~iP~  172 (585)
T PLN02470        150 VIREAFFLASSGRPGPVLVDIPK  172 (585)
T ss_pred             HHHHHHHHhcCCCCCeEEEEecC
Confidence            9999999998875 999999954

>PRK07789 acetolactate synthase 1 catalytic subunit; Validated

Probab=90.33  E-value=2.3  Score=46.89  Aligned_cols=95  Identities=23%  Similarity=0.228  Sum_probs=63.5

Q ss_pred             CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHH
Q 013928          224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE  303 (434)
Q Consensus       224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~  303 (434)
                      -.++++..|=|.++.   .-+|..|..-+.|||+|+-.-....  .........|...+++.+-....+|+  ++.++..
T Consensus        95 ~gv~~~t~GPG~~N~---l~gl~~A~~~~~PllvI~G~~~~~~--~~~~~~q~~d~~~l~~~~tk~s~~v~--~~~~i~~  167 (612)
T PRK07789         95 VGVCMATSGPGATNL---VTPIADANMDSVPVVAITGQVGRGL--IGTDAFQEADIVGITMPITKHNFLVT--DADDIPR  167 (612)
T ss_pred             CEEEEECCCccHHHH---HHHHHHHhhcCCCEEEEecCCCccc--cCCCcCcccchhhhhhcceeEEEEcC--CHHHHHH
Confidence            345666778888864   5578889999999999985332111  00011112355556665554555664  7789999


Q ss_pred             HHHHHHHHHHcc-CCCEEEEEEE
Q 013928          304 VAKEAIERARRG-EGPTLVECET  325 (434)
Q Consensus       304 a~~~Al~~ar~~-~gP~lIev~t  325 (434)
                      .+.+|+..++.+ .||+.|++-.
T Consensus       168 ~l~~A~~~A~~~~~GPV~l~iP~  190 (612)
T PRK07789        168 VIAEAFHIASTGRPGPVLVDIPK  190 (612)
T ss_pred             HHHHHHHHHhcCCCceEEEEEcc
Confidence            999999988876 5999999854

>PRK08322 acetolactate synthase; Reviewed

Probab=90.10  E-value=1.8  Score=46.75  Aligned_cols=95  Identities=17%  Similarity=0.108  Sum_probs=62.5

Q ss_pred             CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHH
Q 013928          224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE  303 (434)
Q Consensus       224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~  303 (434)
                      -.++++..|=|.++.   .-++..|-.-+.|+|+|.-+-..........|  ..|...+++.+--...+|+  ++.++..
T Consensus        64 ~gv~~~t~GpG~~N~---~~~i~~A~~~~~Pll~i~g~~~~~~~~~~~~q--~~d~~~~~~~~tk~~~~v~--~~~~~~~  136 (547)
T PRK08322         64 AGVCLSTLGPGATNL---VTGVAYAQLGGMPMVAITGQKPIKRSKQGSFQ--IVDVVAMMAPLTKWTRQIV--SPDNIPE  136 (547)
T ss_pred             CEEEEECCCccHhHH---HHHHHHHhhcCCCEEEEeccccccccCCCccc--cccHHHHhhhheeEEEEeC--CHHHHHH
Confidence            345566668888864   55788899999999999853321110001111  2355555655544455664  6778889


Q ss_pred             HHHHHHHHHHcc-CCCEEEEEEE
Q 013928          304 VAKEAIERARRG-EGPTLVECET  325 (434)
Q Consensus       304 a~~~Al~~ar~~-~gP~lIev~t  325 (434)
                      .+.+|++.+..+ .||+.|++-.
T Consensus       137 ~i~~A~~~A~~~~~GPV~l~iP~  159 (547)
T PRK08322        137 VVREAFRLAEEERPGAVHLELPE  159 (547)
T ss_pred             HHHHHHHHHccCCCCcEEEEcCh
Confidence            999999988886 4899999953

>TIGR01504 glyox_carbo_lig glyoxylate carboligase

Probab=89.99  E-value=2.1  Score=46.90  Aligned_cols=93  Identities=18%  Similarity=0.175  Sum_probs=62.5

Q ss_pred             eEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHHH
Q 013928          226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVA  305 (434)
Q Consensus       226 ~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~  305 (434)
                      ++++..|=|.++.   .-+|..|..-+.|||+|+-.-.......  ......|...+++.+-....+|.  ++.++.+.+
T Consensus        70 v~~~t~GpG~~N~---~~gla~A~~~~~Pvl~I~G~~~~~~~~~--~~~q~~D~~~~~~~vtk~~~~v~--~~~~i~~~i  142 (588)
T TIGR01504        70 VCIGTSGPAGTDM---ITGLYSASADSIPILCITGQAPRARLHK--EDFQAVDIAAIAKPVSKMAVTVR--EAALVPRVL  142 (588)
T ss_pred             EEEECCCccHHHH---HHHHHHHhhcCCCEEEEecCCCccccCC--CcccccCHHHHhhhhceEEEEcC--CHHHHHHHH
Confidence            3444558887763   4578889999999999985433211110  11112355566666655566665  678999999


Q ss_pred             HHHHHHHHccC-CCEEEEEEE
Q 013928          306 KEAIERARRGE-GPTLVECET  325 (434)
Q Consensus       306 ~~Al~~ar~~~-gP~lIev~t  325 (434)
                      ++|++.++.++ ||+.|++-.
T Consensus       143 ~~A~~~A~~~~~GPV~l~iP~  163 (588)
T TIGR01504       143 QQAFHLMRSGRPGPVLIDLPF  163 (588)
T ss_pred             HHHHHHHccCCCCeEEEEeCc
Confidence            99999888764 899999954

Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.

>PRK08155 acetolactate synthase catalytic subunit; Validated

Probab=89.97  E-value=2  Score=46.72  Aligned_cols=92  Identities=20%  Similarity=0.267  Sum_probs=60.2

Q ss_pred             eEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHHH
Q 013928          226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVA  305 (434)
Q Consensus       226 ~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~  305 (434)
                      ++++..|=|.++.   .-+|..|..-+.|||+|.-.-....-.....|  ..|...+++.+--...+|+  ++.++...+
T Consensus        79 v~~~t~GpG~~N~---l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~~q--~~d~~~~~~~~tk~~~~v~--~~~~~~~~i  151 (564)
T PRK08155         79 VCMACSGPGATNL---VTAIADARLDSIPLVCITGQVPASMIGTDAFQ--EVDTYGISIPITKHNYLVR--DIEELPQVI  151 (564)
T ss_pred             EEEECCCCcHHHH---HHHHHHHHhcCCCEEEEeccCCcccccCCCcc--ccchhhhhhccceEEEEcC--CHHHHHHHH
Confidence            4455558888763   55788899999999999753321110000011  1244445555444455664  788999999


Q ss_pred             HHHHHHHHcc-CCCEEEEEE
Q 013928          306 KEAIERARRG-EGPTLVECE  324 (434)
Q Consensus       306 ~~Al~~ar~~-~gP~lIev~  324 (434)
                      .+|++.++.+ .||+.|++-
T Consensus       152 ~~A~~~a~~~~~GPV~i~iP  171 (564)
T PRK08155        152 SDAFRIAQSGRPGPVWIDIP  171 (564)
T ss_pred             HHHHHHHhcCCCCcEEEEcC
Confidence            9999988887 499999995

>PRK06276 acetolactate synthase catalytic subunit; Reviewed

Probab=89.94  E-value=2.4  Score=46.47  Aligned_cols=95  Identities=17%  Similarity=0.149  Sum_probs=62.7

Q ss_pred             CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHH
Q 013928          224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE  303 (434)
Q Consensus       224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~  303 (434)
                      -.++++..|=|.++.   .-++..|..-+.|||+|+-.-...  ..........|...+++.+-....+|+  ++.++..
T Consensus        64 ~gv~~~t~GPG~~n~---l~~i~~A~~~~~Pvl~I~G~~~~~--~~~~~~~q~~d~~~l~~~~tk~s~~v~--~~~~i~~  136 (586)
T PRK06276         64 VGVCVATSGPGATNL---VTGIATAYADSSPVIALTGQVPTK--LIGNDAFQEIDALGIFMPITKHNFQIK--KPEEIPE  136 (586)
T ss_pred             CEEEEECCCccHHHH---HHHHHHHHhcCCCEEEEeCCCCcc--ccCCCCCccccHhhHHhhhcceEEecC--CHHHHHH
Confidence            345666678888764   568889999999999997432210  000000111345556666555556665  5678889


Q ss_pred             HHHHHHHHHHcc-CCCEEEEEEE
Q 013928          304 VAKEAIERARRG-EGPTLVECET  325 (434)
Q Consensus       304 a~~~Al~~ar~~-~gP~lIev~t  325 (434)
                      .+.+|++.+..+ .||+.|++-.
T Consensus       137 ~i~~A~~~A~~~~~GPV~l~iP~  159 (586)
T PRK06276        137 IFRAAFEIAKTGRPGPVHIDLPK  159 (586)
T ss_pred             HHHHHHHHhcCCCCCcEEEEcCh
Confidence            999999988876 4899999953

>PRK08266 hypothetical protein; Provisional

Probab=89.88  E-value=2.6  Score=45.50  Aligned_cols=96  Identities=17%  Similarity=0.093  Sum_probs=63.1

Q ss_pred             ceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCccccccccc-CchhhhccccCCCcEEEEeCCCHHHHH
Q 013928          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLRATS-DPQIYKKGPAFGMPGFHVDGMDVLKVR  302 (434)
Q Consensus       225 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~~~~~~~-~~d~~~~a~a~Gi~~~~VdG~D~~av~  302 (434)
                      .++++..|=|.++.   .-++..|..-+.|||+|+-.-. +.++... .+.. ..|...+++.+--...+|+  ++.++.
T Consensus        70 ~v~~~t~GpG~~N~---~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~-~~~~~~~d~~~~~~~~tk~~~~v~--~~~~~~  143 (542)
T PRK08266         70 GVCSVVPGPGVLNA---GAALLTAYGCNSPVLCLTGQIPSALIGKGR-GHLHEMPDQLATLRSFTKWAERIE--HPSEAP  143 (542)
T ss_pred             eEEEECCCCcHHHH---HHHHHHHHhhCCCEEEEecCCChhhccCCC-CcceecccHhhHHhhhcceEEEeC--CHHHHH
Confidence            35556668888874   5588899999999999984321 1111100 0111 1355666666655566776  567888


Q ss_pred             HHHHHHHHHHHcc-CCCEEEEEEEe
Q 013928          303 EVAKEAIERARRG-EGPTLVECETY  326 (434)
Q Consensus       303 ~a~~~Al~~ar~~-~gP~lIev~t~  326 (434)
                      ..+++|++.+..+ .||+.|++-..
T Consensus       144 ~~l~~A~~~a~~~~~GPV~l~iP~d  168 (542)
T PRK08266        144 ALVAEAFQQMLSGRPRPVALEMPWD  168 (542)
T ss_pred             HHHHHHHHHHhhCCCCcEEEEeCHh
Confidence            8899999888775 59999999543

>PRK07710 acetolactate synthase catalytic subunit; Reviewed

Probab=89.85  E-value=2.2  Score=46.57  Aligned_cols=94  Identities=22%  Similarity=0.245  Sum_probs=61.6

Q ss_pred             ceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHH
Q 013928          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV  304 (434)
Q Consensus       225 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a  304 (434)
                      .++++..|=|.++.   .-++..|..-+.|||+|.-.-....-.....|  ..|...+++.+-....+|.  ++.++...
T Consensus        80 gv~~~t~GPG~~N~---~~gl~~A~~~~~Pvl~ItG~~~~~~~~~~~~q--~~d~~~l~~~~tk~~~~v~--~~~~~~~~  152 (571)
T PRK07710         80 GVVIATSGPGATNV---VTGLADAMIDSLPLVVFTGQVATSVIGSDAFQ--EADIMGITMPVTKHNYQVR--KASDLPRI  152 (571)
T ss_pred             eEEEECCCccHHHH---HHHHHHHhhcCCCEEEEeccCCccccCCCCcc--ccchhhhhhcccceEEecC--CHHHHHHH
Confidence            45566668888763   55788899999999999854331110000111  2345555555444455554  67788889


Q ss_pred             HHHHHHHHHcc-CCCEEEEEEE
Q 013928          305 AKEAIERARRG-EGPTLVECET  325 (434)
Q Consensus       305 ~~~Al~~ar~~-~gP~lIev~t  325 (434)
                      +++|++.++.+ .||+.|++-.
T Consensus       153 i~~A~~~A~~~~~GPV~l~iP~  174 (571)
T PRK07710        153 IKEAFHIATTGRPGPVLIDIPK  174 (571)
T ss_pred             HHHHHHHHhcCCCCcEEEEcCh
Confidence            99999888877 4999999954

>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type

Probab=89.82  E-value=3.1  Score=45.19  Aligned_cols=95  Identities=22%  Similarity=0.230  Sum_probs=64.4

Q ss_pred             CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHH
Q 013928          224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE  303 (434)
Q Consensus       224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~  303 (434)
                      -.++++..|=|.++.   .-++..|..-+.|||+|+-.-....-.....|  ..|...+++.+-....+|+  ++.++..
T Consensus        65 ~gv~~~t~GpG~~n~---l~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~q--~~d~~~~~~~~tk~~~~v~--~~~~~~~  137 (558)
T TIGR00118        65 VGVVLVTSGPGATNL---VTGIATAYMDSIPMVVFTGQVPTSLIGSDAFQ--EADILGITMPITKHSFQVK--SAEDIPR  137 (558)
T ss_pred             CEEEEECCCCcHHHH---HHHHHHHHhcCCCEEEEecCCCccccCCCCCc--ccChhhhhcCccceeEEeC--CHHHHHH
Confidence            346667778888764   55888999999999999853221100000011  2355566666666667775  6778989


Q ss_pred             HHHHHHHHHHcc-CCCEEEEEEE
Q 013928          304 VAKEAIERARRG-EGPTLVECET  325 (434)
Q Consensus       304 a~~~Al~~ar~~-~gP~lIev~t  325 (434)
                      .+.+|++.+..+ .||+.|++-.
T Consensus       138 ~v~~A~~~A~~~~~GPV~i~iP~  160 (558)
T TIGR00118       138 IIKEAFHIATTGRPGPVLVDLPK  160 (558)
T ss_pred             HHHHHHHHHhcCCCCeEEEEcCh
Confidence            999999988887 4899999953

Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.

>PRK09107 acetolactate synthase 3 catalytic subunit; Validated

Probab=89.72  E-value=2.1  Score=47.02  Aligned_cols=94  Identities=22%  Similarity=0.206  Sum_probs=62.6

Q ss_pred             ceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHH
Q 013928          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV  304 (434)
Q Consensus       225 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a  304 (434)
                      .++++..|=|.++.   .-++..|..-+.|||+|.-.-....-.....|  ..|...+++.+--...+|+  ++.++...
T Consensus        76 gv~~~t~GPG~~N~---l~gia~A~~~~~Pvl~i~G~~~~~~~~~~~~q--~~d~~~l~~~vtk~~~~v~--~~~~i~~~  148 (595)
T PRK09107         76 GVVLVTSGPGATNA---VTPLQDALMDSIPLVCITGQVPTHLIGSDAFQ--ECDTVGITRPCTKHNWLVK--DVNDLARV  148 (595)
T ss_pred             EEEEECCCccHhHH---HHHHHHHhhcCCCEEEEEcCCChhhcCCCCCc--ccchhhhhhhheEEEEEeC--CHHHHHHH
Confidence            45666678888874   45788899999999999854331110000111  2344455555444455664  67899999


Q ss_pred             HHHHHHHHHcc-CCCEEEEEEE
Q 013928          305 AKEAIERARRG-EGPTLVECET  325 (434)
Q Consensus       305 ~~~Al~~ar~~-~gP~lIev~t  325 (434)
                      +.+|++.++.+ .||+.|++-.
T Consensus       149 l~~A~~~A~s~~~GPV~l~iP~  170 (595)
T PRK09107        149 IHEAFHVATSGRPGPVVVDIPK  170 (595)
T ss_pred             HHHHHHHhcCCCCceEEEecCC
Confidence            99999999887 4999999843

>PRK06882 acetolactate synthase 3 catalytic subunit; Validated

Probab=89.71  E-value=2.3  Score=46.40  Aligned_cols=95  Identities=16%  Similarity=0.151  Sum_probs=62.7

Q ss_pred             CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHH
Q 013928          224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE  303 (434)
Q Consensus       224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~  303 (434)
                      -.++++..|=|.++.   .-++..|..-+.|||+|.-.-....-.....|  ..|...+++.+-....+|.  ++.++..
T Consensus        68 ~gv~~~t~GpG~~N~---l~~i~~A~~~~~Pvlvi~G~~~~~~~~~~~~q--~~d~~~l~~~vtk~s~~v~--~~~~~~~  140 (574)
T PRK06882         68 VGCVLVTSGPGATNA---ITGIATAYTDSVPLVILSGQVPSNLIGTDAFQ--ECDMLGISRPVVKHSFIVK--NAEDIPS  140 (574)
T ss_pred             CeEEEECCCccHHHH---HHHHHHHhhcCCCEEEEecCCCccccCCCccc--ccchhhhhhcccceEEEeC--CHHHHHH
Confidence            345666668888764   45788899999999999754321110000111  2345556665555556665  6778888


Q ss_pred             HHHHHHHHHHcc-CCCEEEEEEE
Q 013928          304 VAKEAIERARRG-EGPTLVECET  325 (434)
Q Consensus       304 a~~~Al~~ar~~-~gP~lIev~t  325 (434)
                      .+.+|++.+..+ .||+.|++-.
T Consensus       141 ~l~~A~~~A~~~~~GPV~l~iP~  163 (574)
T PRK06882        141 TIKKAFYIASTGRPGPVVIDIPK  163 (574)
T ss_pred             HHHHHHHHHhcCCCCCEEEecCH
Confidence            999999888776 5999999954

>PRK08199 thiamine pyrophosphate protein; Validated

Probab=89.53  E-value=2.1  Score=46.43  Aligned_cols=93  Identities=14%  Similarity=0.117  Sum_probs=60.9

Q ss_pred             ceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHH
Q 013928          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV  304 (434)
Q Consensus       225 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a  304 (434)
                      .++++..|=|.++.   .-++..|-.-+.|||+|.-.-..........|  ..|...+++.+=-...+|  .++.++.+.
T Consensus        73 gv~~~t~GpG~~N~---~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~~q--~~d~~~l~~~~tk~~~~v--~~~~~~~~~  145 (557)
T PRK08199         73 GICFVTRGPGATNA---SIGVHTAFQDSTPMILFVGQVARDFREREAFQ--EIDYRRMFGPMAKWVAEI--DDAARIPEL  145 (557)
T ss_pred             EEEEeCCCccHHHH---HHHHHHHhhcCCCEEEEecCCccccCCCCccc--ccCHHHhhhhhhceeeec--CCHHHHHHH
Confidence            45566668888863   55788999999999999843221110000111  124444555443344555  478899999


Q ss_pred             HHHHHHHHHcc-CCCEEEEEE
Q 013928          305 AKEAIERARRG-EGPTLVECE  324 (434)
Q Consensus       305 ~~~Al~~ar~~-~gP~lIev~  324 (434)
                      +.+|++.+..+ .||+.|++-
T Consensus       146 ~~~A~~~A~~~~~GPV~l~iP  166 (557)
T PRK08199        146 VSRAFHVATSGRPGPVVLALP  166 (557)
T ss_pred             HHHHHHHHhcCCCCcEEEEcC
Confidence            99999998887 599999985

>PRK08273 thiamine pyrophosphate protein; Provisional

Probab=89.41  E-value=1.8  Score=47.57  Aligned_cols=95  Identities=19%  Similarity=0.057  Sum_probs=60.9

Q ss_pred             ceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCC-CcEEEEeCCCHHHHHH
Q 013928          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFG-MPGFHVDGMDVLKVRE  303 (434)
Q Consensus       225 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~G-i~~~~VdG~D~~av~~  303 (434)
                      .++++..|=|+++.   .-++..|-.-+.|||+|+-.=....  .........|...+++.+- ....+|+  ++.++..
T Consensus        69 gv~~~t~GPG~~n~---~~gi~~A~~d~vPvl~I~G~~~~~~--~~~~~~q~~d~~~l~~~vt~k~~~~v~--~~~~~~~  141 (597)
T PRK08273         69 GVCLATSGPGAIHL---LNGLYDAKLDHVPVVAIVGQQARAA--LGGHYQQEVDLQSLFKDVAGAFVQMVT--VPEQLRH  141 (597)
T ss_pred             EEEEECCCccHHHH---HHHHHHHHhcCCCEEEEecCCchhh--cCCCCCCccCHHHHHHHHHHHHeeEeC--CHHHHHH
Confidence            45556668888874   4578889999999999984321000  0000111234444555443 3344565  5678888


Q ss_pred             HHHHHHHHHHccCCCEEEEEEEe
Q 013928          304 VAKEAIERARRGEGPTLVECETY  326 (434)
Q Consensus       304 a~~~Al~~ar~~~gP~lIev~t~  326 (434)
                      .+.+|++.+..+.||+.|++-..
T Consensus       142 ~l~~A~~~A~~~~gPV~i~iP~D  164 (597)
T PRK08273        142 LVDRAVRTALAERTVTAVILPND  164 (597)
T ss_pred             HHHHHHHHHhhCCCCEEEEeCcc
Confidence            89999999888889999998543

>PRK12474 hypothetical protein; Provisional

Probab=89.29  E-value=2.7  Score=45.27  Aligned_cols=95  Identities=18%  Similarity=0.079  Sum_probs=61.6

Q ss_pred             CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHH
Q 013928          224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE  303 (434)
Q Consensus       224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~  303 (434)
                      -.++++..|=|.++-   .-++..|..-+.|||+|+-............|  ..|...+++.+--...+|  .++.++.+
T Consensus        69 ~gv~~~t~GpG~~N~---~~gl~~A~~d~~Pvl~i~G~~~~~~~~~~~~q--~~d~~~~~~~vtk~~~~v--~~~~~~~~  141 (518)
T PRK12474         69 PAVTLLHLGPGLANG---LANLHNARRAASPIVNIVGDHAVEHLQYDAPL--TSDIDGFARPVSRWVHRS--ASAGAVDS  141 (518)
T ss_pred             CEEEEEccchhHhHh---HHHHHHHhhcCCCEEEEeccCchhhcCCCCcc--ccCHHHhhhcccceeeec--CCHHHHHH
Confidence            345566668887763   45778889999999999854321110000011  135555666544444455  47788999


Q ss_pred             HHHHHHHHHHccC-CCEEEEEEE
Q 013928          304 VAKEAIERARRGE-GPTLVECET  325 (434)
Q Consensus       304 a~~~Al~~ar~~~-gP~lIev~t  325 (434)
                      .+++|++.+..+. ||++|++-.
T Consensus       142 ~i~rA~~~A~~~~~GPV~l~iP~  164 (518)
T PRK12474        142 DVARAVQAAQSAPGGIATLIMPA  164 (518)
T ss_pred             HHHHHHHHHhcCCCCcEEEEech
Confidence            9999998888775 999999954

>PRK08979 acetolactate synthase 3 catalytic subunit; Validated

Probab=89.28  E-value=2.2  Score=46.54  Aligned_cols=94  Identities=20%  Similarity=0.230  Sum_probs=61.7

Q ss_pred             ceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHH
Q 013928          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV  304 (434)
Q Consensus       225 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a  304 (434)
                      .++++..|=|.++.   .-++..|..-+.|||+|.-.-.....  ........|...+++.+--...+|+  +++++...
T Consensus        69 gv~~~t~GpG~~n~---l~gia~A~~~~~Pvl~i~G~~~~~~~--~~~~~q~~d~~~~~~~itk~~~~v~--~~~~~~~~  141 (572)
T PRK08979         69 GVVLVTSGPGATNT---ITGIATAYMDSIPMVVLSGQVPSNLI--GNDAFQECDMIGISRPVVKHSFLVK--DAEDIPEI  141 (572)
T ss_pred             eEEEECCCchHhHH---HHHHHHHhhcCCCEEEEecCCCcccc--CCCCCcccchhHHhhhceeEEEecC--CHHHHHHH
Confidence            45555668888763   45788889999999998743221110  0001112355556665544455665  67889999


Q ss_pred             HHHHHHHHHccC-CCEEEEEEE
Q 013928          305 AKEAIERARRGE-GPTLVECET  325 (434)
Q Consensus       305 ~~~Al~~ar~~~-gP~lIev~t  325 (434)
                      +++|++.++.+. ||+.|++-.
T Consensus       142 l~~A~~~A~~~~~GPV~l~iP~  163 (572)
T PRK08979        142 IKKAFYIASTGRPGPVVIDLPK  163 (572)
T ss_pred             HHHHHHHHhCCCCCcEEEecCH
Confidence            999999988865 999999853

>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family

Probab=89.28  E-value=2.2  Score=46.32  Aligned_cols=97  Identities=14%  Similarity=0.058  Sum_probs=60.7

Q ss_pred             CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCcc-Cccc--ccccccCc-hhhhccccCCCcEEEEeCCCHH
Q 013928          224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA-IGMS--HLRATSDP-QIYKKGPAFGMPGFHVDGMDVL  299 (434)
Q Consensus       224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~-is~~--~~~~~~~~-d~~~~a~a~Gi~~~~VdG~D~~  299 (434)
                      -.++++..|=|.++.   .-++..|..-+.|||+|.-+.... ++..  .+.+.... +...+++..--...+|.  ++.
T Consensus        64 ~gv~~~t~GpG~~n~---~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vtk~~~~v~--~~~  138 (535)
T TIGR03394        64 LGVAAVTYGAGAFNM---VNAIAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDSQFQVFKEVTCDQAVLD--DPA  138 (535)
T ss_pred             ceEEEEecchHHHhh---hhHHHHHhhcCCCEEEEECCCCcccccCCceeEeeccchHHHHHhhhhheEEEEEeC--ChH
Confidence            345666778998874   457889999999999998543211 1110  01111112 23455554433344554  566


Q ss_pred             HHHHHHHHHHHHHHccCCCEEEEEEE
Q 013928          300 KVREVAKEAIERARRGEGPTLVECET  325 (434)
Q Consensus       300 av~~a~~~Al~~ar~~~gP~lIev~t  325 (434)
                      ++.+.+++|++.+....||+.|++-.
T Consensus       139 ~~~~~~~~A~~~a~~~~gPv~i~iP~  164 (535)
T TIGR03394       139 TAPAEIARVLGSARELSRPVYLEIPR  164 (535)
T ss_pred             HhHHHHHHHHHHHHHCCCCEEEEech
Confidence            77778888888888888999999954

A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.

>PRK06965 acetolactate synthase 3 catalytic subunit; Validated

Probab=88.77  E-value=3.3  Score=45.34  Aligned_cols=93  Identities=27%  Similarity=0.301  Sum_probs=61.7

Q ss_pred             ceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCc-cCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHH
Q 013928          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLW-AIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE  303 (434)
Q Consensus       225 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y-~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~  303 (434)
                      .++++..|=|.++.   .-++..|..-+.|||+|.-.=.. .++.   ......|...+++.+--...+|.  ++.++.+
T Consensus        86 gv~~~t~GpG~~N~---l~gl~~A~~~~~Pvl~i~G~~~~~~~~~---~~~q~~d~~~l~~~itk~~~~v~--~~~~~~~  157 (587)
T PRK06965         86 GVALVTSGPGVTNA---VTGIATAYMDSIPMVVISGQVPTAAIGQ---DAFQECDTVGITRPIVKHNFLVK--DVRDLAE  157 (587)
T ss_pred             eEEEECCCccHHHH---HHHHHHHhhcCCCEEEEecCCCccccCC---CCcccccHHHHhcCCcceeEEeC--CHHHHHH
Confidence            45566668888763   55788899999999998732110 0110   01112345555666555566665  6678888


Q ss_pred             HHHHHHHHHHcc-CCCEEEEEEE
Q 013928          304 VAKEAIERARRG-EGPTLVECET  325 (434)
Q Consensus       304 a~~~Al~~ar~~-~gP~lIev~t  325 (434)
                      .+.+|++.++.+ .||+.|++-.
T Consensus       158 ~i~~A~~~A~~~~~GPV~l~iP~  180 (587)
T PRK06965        158 TVKKAFYIARTGRPGPVVVDIPK  180 (587)
T ss_pred             HHHHHHHHHhcCCCCeEEEEeCh
Confidence            999999999887 4999999943

>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins

Probab=88.60  E-value=4.3  Score=36.52  Aligned_cols=99  Identities=17%  Similarity=0.217  Sum_probs=57.0

Q ss_pred             chhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHH-HHHHcCCCeEEEEEcCCccC--cccccccccCc
Q 013928          201 IPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLN-MAALWKLPIVFVVENNLWAI--GMSHLRATSDP  277 (434)
Q Consensus       201 lp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn-~A~~~~LPvI~VV~NN~y~i--s~~~~~~~~~~  277 (434)
                      +.+|.|+|+.           + .+++++++  ..|..- .++.|. .++.+++|+++++...+++.  ..+++..  ..
T Consensus        52 vg~A~GlA~~-----------G-~~pi~~~~--~~f~~r-a~dqi~~~~a~~~~pv~~~~~~~g~~~~~~G~tH~~--~~  114 (156)
T cd07033          52 VGIAAGLALH-----------G-LKPFVSTF--SFFLQR-AYDQIRHDVALQNLPVKFVGTHAGISVGEDGPTHQG--IE  114 (156)
T ss_pred             HHHHHHHHHC-----------C-CeEEEEEC--HHHHHH-HHHHHHHHHhccCCCeEEEEECCcEecCCCCcccch--HH
Confidence            4556677764           3 34455555  444432 366666 99999999999988765544  2222211  12


Q ss_pred             hhhhccccCCCcEEEE-eCCCHHHHHHHHHHHHHHHHccCCCEEEEE
Q 013928          278 QIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVEC  323 (434)
Q Consensus       278 d~~~~a~a~Gi~~~~V-dG~D~~av~~a~~~Al~~ar~~~gP~lIev  323 (434)
                      ++ ....  .+|+++| .-.|+.++...++.|+    +.++|++|-+
T Consensus       115 ~~-a~~~--~iPg~~v~~Ps~~~~~~~ll~~a~----~~~~P~~irl  154 (156)
T cd07033         115 DI-ALLR--AIPNMTVLRPADANETAAALEAAL----EYDGPVYIRL  154 (156)
T ss_pred             HH-HHhc--CCCCCEEEecCCHHHHHHHHHHHH----hCCCCEEEEe
Confidence            22 2223  4555543 3457778777666665    3467998864

Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included

>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed

Probab=88.44  E-value=4.3  Score=44.18  Aligned_cols=95  Identities=22%  Similarity=0.236  Sum_probs=62.1

Q ss_pred             CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHH
Q 013928          224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE  303 (434)
Q Consensus       224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~  303 (434)
                      -.++++..|=|.++.   .-+|..|..-+.|||+|.-.-....  .........|...+++.+-....+|.  ++.++..
T Consensus        71 ~~v~~~t~GpG~~n~---~~gl~~A~~~~~Pvl~i~G~~~~~~--~~~~~~q~~d~~~~~~~itk~s~~v~--~~~~i~~  143 (561)
T PRK06048         71 VGVCVATSGPGATNL---VTGIATAYMDSVPIVALTGQVPRSM--IGNDAFQEADITGITMPITKHNYLVQ--DAKDLPR  143 (561)
T ss_pred             CeEEEECCCCcHHHH---HHHHHHHhhcCCCEEEEeccCCccc--cCCCCccccchhhhccCcceEEEEeC--CHHHHHH
Confidence            345666678888874   5678899999999998874221110  00011112345555555544455664  6778889


Q ss_pred             HHHHHHHHHHcc-CCCEEEEEEE
Q 013928          304 VAKEAIERARRG-EGPTLVECET  325 (434)
Q Consensus       304 a~~~Al~~ar~~-~gP~lIev~t  325 (434)
                      .+.+|++.++.+ .||+.|++-.
T Consensus       144 ~i~~A~~~A~~~~~GPV~l~iP~  166 (561)
T PRK06048        144 IIKEAFHIASTGRPGPVLIDLPK  166 (561)
T ss_pred             HHHHHHHHHhcCCCCeEEEecCh
Confidence            999999888876 5999999953

>PRK07282 acetolactate synthase catalytic subunit; Reviewed

Probab=88.43  E-value=4  Score=44.55  Aligned_cols=94  Identities=16%  Similarity=0.234  Sum_probs=63.3

Q ss_pred             CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHH
Q 013928          224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVR  302 (434)
Q Consensus       224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~  302 (434)
                      -.++++..|=|.++.   .-++..|..-+.|||+|.-.-. ..+... ..|  ..|...+++.+-....+|+  ++.++.
T Consensus        74 ~gv~~~t~GPG~~n~---~~gla~A~~~~~Pvl~i~G~~~~~~~~~~-~~q--~~d~~~~~~~itk~s~~v~--~~~~~~  145 (566)
T PRK07282         74 LGVAVVTSGPGATNA---ITGIADAMSDSVPLLVFTGQVARAGIGKD-AFQ--EADIVGITMPITKYNYQIR--ETADIP  145 (566)
T ss_pred             CeEEEECCCccHHHH---HHHHHHHhhcCCCEEEEecccccccCCCC-Ccc--ccChhchhcCCCceeEEcC--CHHHHH
Confidence            345666679988874   4578888899999999985432 111111 111  1244455665555555665  677888


Q ss_pred             HHHHHHHHHHHccC-CCEEEEEEE
Q 013928          303 EVAKEAIERARRGE-GPTLVECET  325 (434)
Q Consensus       303 ~a~~~Al~~ar~~~-gP~lIev~t  325 (434)
                      ..+.+|++.++.+. ||+.|++-.
T Consensus       146 ~~l~~A~~~A~~~~~GPV~l~iP~  169 (566)
T PRK07282        146 RIITEAVHIATTGRPGPVVIDLPK  169 (566)
T ss_pred             HHHHHHHHHHhcCCCCeEEEeCCh
Confidence            99999999998874 999999854

>PRK11269 glyoxylate carboligase; Provisional

Probab=88.31  E-value=3  Score=45.75  Aligned_cols=93  Identities=18%  Similarity=0.127  Sum_probs=62.0

Q ss_pred             eEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHHH
Q 013928          226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVA  305 (434)
Q Consensus       226 ~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~  305 (434)
                      ++++..|=|.++.   .-++..|..-+.|||+|.-+-..........|  ..|...+++.+-....+|  .++.++...+
T Consensus        71 v~~~t~GPG~~N~---l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~q--~~d~~~l~~~itk~s~~v--~~~~~~~~~i  143 (591)
T PRK11269         71 VCIGTSGPAGTDM---ITGLYSASADSIPILCITGQAPRARLHKEDFQ--AVDIESIAKPVTKWAVTV--REPALVPRVF  143 (591)
T ss_pred             EEEECCCCcHHHH---HHHHHHHhhcCCCEEEEecCCCccccCCCccc--ccChhhHhhcceeEEEEc--CCHHHHHHHH
Confidence            4555668888863   45788899999999999864332111111111  234555666554445556  4677899999


Q ss_pred             HHHHHHHHccC-CCEEEEEEE
Q 013928          306 KEAIERARRGE-GPTLVECET  325 (434)
Q Consensus       306 ~~Al~~ar~~~-gP~lIev~t  325 (434)
                      ++|++.++.+. ||+.|++-.
T Consensus       144 ~~A~~~A~~~~~GPV~l~iP~  164 (591)
T PRK11269        144 QQAFHLMRSGRPGPVLIDLPF  164 (591)
T ss_pred             HHHHHHHhhCCCCeEEEEeCh
Confidence            99999998764 899999954

>PRK09124 pyruvate dehydrogenase; Provisional

Probab=88.16  E-value=4.3  Score=44.25  Aligned_cols=93  Identities=12%  Similarity=-0.010  Sum_probs=57.7

Q ss_pred             ceEEEE--eCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHH
Q 013928          225 HVTLAF--FGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVR  302 (434)
Q Consensus       225 ~~vv~~--~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~  302 (434)
                      +..+|+  .|=|.++.   .-++..|..-+.|||+|.-+-....-.....|  ..|...+++.+-....+|+  ++.++.
T Consensus        66 ~~gv~~~t~GpG~~n~---~~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~Q--~~d~~~l~~~itk~~~~v~--~~~~~~  138 (574)
T PRK09124         66 ELAVCAGSCGPGNLHL---INGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQ--ETHPQELFRECSHYCELVS--NPEQLP  138 (574)
T ss_pred             CcEEEEECCCCCHHHH---HHHHHHHhhcCCCEEEEecCCccccCCCCCcc--ccChhhhcccceeeeEEeC--CHHHHH
Confidence            344554  57777762   34688888999999999854321110000111  1244455554433344554  667888


Q ss_pred             HHHHHHHHHHHccCCCEEEEEE
Q 013928          303 EVAKEAIERARRGEGPTLVECE  324 (434)
Q Consensus       303 ~a~~~Al~~ar~~~gP~lIev~  324 (434)
                      ..+++|++.+....||+.|++-
T Consensus       139 ~~i~~A~~~A~~~~gPV~l~iP  160 (574)
T PRK09124        139 RVLAIAMRKAILNRGVAVVVLP  160 (574)
T ss_pred             HHHHHHHHHHhcCCCCEEEEeC
Confidence            8888888888887899999984

>PRK05858 hypothetical protein; Provisional

Probab=88.02  E-value=3.4  Score=44.79  Aligned_cols=93  Identities=15%  Similarity=0.146  Sum_probs=61.4

Q ss_pred             ceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCcc-CcccccccccCchhhhccccCCCcEEEEeCCCHHHHHH
Q 013928          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA-IGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE  303 (434)
Q Consensus       225 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~-is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~  303 (434)
                      .++++..|=|.++.   .-++..|..-+.|||+|.-+-... ++.. ..|  ..|...+++.+--...+|+  ++.++.+
T Consensus        69 gv~~~t~GpG~~n~---~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~-~~q--~~d~~~l~~~~tk~~~~v~--~~~~~~~  140 (542)
T PRK05858         69 GVAVLTAGPGVTNG---MSAMAAAQFNQSPLVVLGGRAPALRWGMG-SLQ--EIDHVPFVAPVTKFAATAQ--SAENAGR  140 (542)
T ss_pred             eEEEEcCCchHHHH---HHHHHHHHhcCCCEEEEeCCCCcccCCCC-CCc--ccchhhhhhhhhceEEEeC--CHHHHHH
Confidence            34555557777764   568889999999999887433211 1111 112  2345556666655566775  5678888


Q ss_pred             HHHHHHHHHHcc-CCCEEEEEEE
Q 013928          304 VAKEAIERARRG-EGPTLVECET  325 (434)
Q Consensus       304 a~~~Al~~ar~~-~gP~lIev~t  325 (434)
                      .+.+|+..+..+ .||+.|++-.
T Consensus       141 ~i~~A~~~A~~~~~GPV~l~iP~  163 (542)
T PRK05858        141 LVDQALQAAVTPHRGPVFVDFPM  163 (542)
T ss_pred             HHHHHHHHHcCCCCCeEEEEcCh
Confidence            999999888775 5899999853

>PRK08527 acetolactate synthase 3 catalytic subunit; Validated

Probab=87.84  E-value=4.2  Score=44.30  Aligned_cols=95  Identities=19%  Similarity=0.203  Sum_probs=61.7

Q ss_pred             CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHH
Q 013928          224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE  303 (434)
Q Consensus       224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~  303 (434)
                      -.++++..|=|.++.   .-++..|..-+.|||+|.-.=....  .........|...+++.+--...+|  ++++++..
T Consensus        67 ~gv~~~t~GpG~~n~---~~gla~A~~~~~Pvl~i~G~~~~~~--~~~~~~q~~d~~~~~~~~tk~s~~v--~~~~~i~~  139 (563)
T PRK08527         67 VGVAIVTSGPGFTNA---VTGLATAYMDSIPLVLISGQVPNSL--IGTDAFQEIDAVGISRPCVKHNYLV--KSIEELPR  139 (563)
T ss_pred             CEEEEECCCCcHHHH---HHHHHHHhhcCCCEEEEecCCCccc--cCCCCCcccchhhhhhcccceEEEc--CCHHHHHH
Confidence            345666678888873   5578889999999999874221000  0000011124444555554444555  47889999


Q ss_pred             HHHHHHHHHHccC-CCEEEEEEE
Q 013928          304 VAKEAIERARRGE-GPTLVECET  325 (434)
Q Consensus       304 a~~~Al~~ar~~~-gP~lIev~t  325 (434)
                      ++++|++.++.+. ||+.|++-.
T Consensus       140 ~l~~A~~~a~s~~~GPV~l~iP~  162 (563)
T PRK08527        140 ILKEAFYIARSGRPGPVHIDIPK  162 (563)
T ss_pred             HHHHHHHHHhcCCCCcEEEEcCH
Confidence            9999999988765 899999853

>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]

Probab=87.83  E-value=3.5  Score=42.73  Aligned_cols=111  Identities=19%  Similarity=0.193  Sum_probs=75.1

Q ss_pred             ccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCch
Q 013928          199 EGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQ  278 (434)
Q Consensus       199 ~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d  278 (434)
                      .++.+++|++++           + -+..-...|.|-..|   +|.|.+|+-..+|+|+++.+..-. ++.........|
T Consensus        58 ~a~s~v~GA~~a-----------G-ar~~TaTSg~Gl~Lm---~E~l~~a~~~~~P~Vi~~~~R~~p-s~g~p~~~dq~D  121 (365)
T COG0674          58 GAISAVIGASYA-----------G-ARAFTATSGQGLLLM---AEALGLAAGTETPLVIVVAQRPLP-STGLPIKGDQSD  121 (365)
T ss_pred             HHHHHHHHHHhh-----------C-cceEeecCCccHHHH---HHHHHHHHhccCCeEEEEeccCcC-CCcccccccHHH
Confidence            356778899888           2 344567778887666   899999999999999888887622 221111111223


Q ss_pred             hhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecC
Q 013928          279 IYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF  328 (434)
Q Consensus       279 ~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~  328 (434)
                      +...-.+ ||+.+...  |+.+.++....|...+.+..-|+++-..-++.
T Consensus       122 ~~~~r~~-g~~~~~~~--s~qEa~d~t~~Af~iAe~~~~Pvi~~~D~~~~  168 (365)
T COG0674         122 LMAARDT-GFPILVSA--SVQEAFDLTLLAFNIAEKVLTPVIVLLDGFLA  168 (365)
T ss_pred             HHHHHcc-CceEEeec--cHHHHHHHHHHHHHHHHHhcCCEEEeeccchh
Confidence            3322122 78877766  77888888888888888888899887655543

>TIGR02720 pyruv_oxi_spxB pyruvate oxidase

Probab=87.33  E-value=5  Score=43.86  Aligned_cols=95  Identities=17%  Similarity=0.070  Sum_probs=61.0

Q ss_pred             CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCc-cCcccccccccCchhhhccccCCCcEEEEeCCCHHHHH
Q 013928          224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLW-AIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVR  302 (434)
Q Consensus       224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y-~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~  302 (434)
                      -.++++..|=|.++-   .-++..|-.-+.|||+|.-.-.. ..+.. ..|  ..|...+++.+-....+|.  ++.++.
T Consensus        64 ~gv~~~t~GPG~~n~---~~~i~~A~~~~~Pvl~I~G~~~~~~~~~~-~~q--~id~~~~~~~vtk~~~~v~--~~~~~~  135 (575)
T TIGR02720        64 IGVCFGSAGPGATHL---LNGLYDAKEDHVPVLALVGQVPTTGMNMD-TFQ--EMNENPIYADVAVYNRTAM--TAESLP  135 (575)
T ss_pred             ceEEEeCCCCcHHHH---HHHHHHHhhcCCCEEEEecCCccccCCCC-Ccc--eechhhhhhhcceEEEEeC--CHHHHH
Confidence            345666678888763   55788999999999999854321 11111 111  1233444454443344554  566888


Q ss_pred             HHHHHHHHHHHccCCCEEEEEEEe
Q 013928          303 EVAKEAIERARRGEGPTLVECETY  326 (434)
Q Consensus       303 ~a~~~Al~~ar~~~gP~lIev~t~  326 (434)
                      ..+.+|+..+....||+.|++-..
T Consensus       136 ~~i~~A~~~A~~~~GPV~l~iP~D  159 (575)
T TIGR02720       136 HVIDEAIRRAYAHNGVAVVTIPVD  159 (575)
T ss_pred             HHHHHHHHHHhhCCCCEEEEECcc
Confidence            888888888888889999999543

Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.

>PRK08617 acetolactate synthase; Reviewed

Probab=86.89  E-value=4.4  Score=43.91  Aligned_cols=93  Identities=19%  Similarity=0.057  Sum_probs=62.0

Q ss_pred             ceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCc-cCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHH
Q 013928          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLW-AIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE  303 (434)
Q Consensus       225 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y-~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~  303 (434)
                      .++++..|=|.++-   .-++..|..-+.|||+|.-.... .++.. ..|  ..|...+++.+--...+|+  +++++..
T Consensus        69 gv~~vt~GpG~~N~---l~gl~~A~~~~~PvlvisG~~~~~~~~~~-~~q--~~d~~~l~~~~tk~~~~v~--~~~~~~~  140 (552)
T PRK08617         69 GVVLVTSGPGVSNL---ATGLVTATAEGDPVVAIGGQVKRADRLKR-THQ--SMDNVALFRPITKYSAEVQ--DPDNLSE  140 (552)
T ss_pred             EEEEECCCCcHhHh---HHHHHHHhhcCCCEEEEecCCcccccCCC-Ccc--ccchhhhhhhhcceEEEeC--CHHHHHH
Confidence            34555568888873   55788899999999998753221 11111 111  2344556666655566665  6778889


Q ss_pred             HHHHHHHHHHcc-CCCEEEEEEE
Q 013928          304 VAKEAIERARRG-EGPTLVECET  325 (434)
Q Consensus       304 a~~~Al~~ar~~-~gP~lIev~t  325 (434)
                      .+.+|++.+..+ .||+.|++-.
T Consensus       141 ~i~~A~~~a~~~~~GPV~l~iP~  163 (552)
T PRK08617        141 VLANAFRAAESGRPGAAFVSLPQ  163 (552)
T ss_pred             HHHHHHHHHccCCCCcEEEeChh
Confidence            999999888876 4899999853

>PRK07092 benzoylformate decarboxylase; Reviewed

Probab=86.78  E-value=4.9  Score=43.41  Aligned_cols=96  Identities=15%  Similarity=0.006  Sum_probs=60.9

Q ss_pred             CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHH
Q 013928          224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE  303 (434)
Q Consensus       224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~  303 (434)
                      ..++++..|=|.++.   .-++..|..-+.|||+|+-.-.+........+ ...|...+++.+--...+|  .++.++.+
T Consensus        74 ~~v~~vt~gpG~~N~---~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~-~~~d~~~l~~~~tk~~~~v--~~~~~~~~  147 (530)
T PRK07092         74 AAFVNLHSAAGVGNA---MGNLFTAFKNHTPLVITAGQQARSILPFEPFL-AAVQAAELPKPYVKWSIEP--ARAEDVPA  147 (530)
T ss_pred             ceEEEeccCchHHHH---HHHHHHHhhcCCCEEEEecCCcccccCccchh-cccCHHHhhcccccceeec--CCHHHHHH
Confidence            344555568887753   56888999999999988754322111000001 1124445555554444455  46788889


Q ss_pred             HHHHHHHHHHccC-CCEEEEEEE
Q 013928          304 VAKEAIERARRGE-GPTLVECET  325 (434)
Q Consensus       304 a~~~Al~~ar~~~-gP~lIev~t  325 (434)
                      .+.+|++.++.+. ||+.|++-.
T Consensus       148 ~i~~A~~~A~~~~~GPv~l~iP~  170 (530)
T PRK07092        148 AIARAYHIAMQPPRGPVFVSIPY  170 (530)
T ss_pred             HHHHHHHHHhcCCCCcEEEEccH
Confidence            9999999888874 899999953

>CHL00099 ilvB acetohydroxyacid synthase large subunit

Probab=86.65  E-value=5.3  Score=43.78  Aligned_cols=93  Identities=20%  Similarity=0.275  Sum_probs=61.4

Q ss_pred             ceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHH
Q 013928          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE  303 (434)
Q Consensus       225 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~  303 (434)
                      .++++..|=|.++.   .-+|..|..-+.|||+|.-.-. +.++.. ..|  ..|...+++.+--...+|+  +++++.+
T Consensus        78 gv~~~t~GPG~~N~---l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~-~~q--~~d~~~~~~~~tk~~~~v~--~~~~i~~  149 (585)
T CHL00099         78 GVCFATSGPGATNL---VTGIATAQMDSVPLLVITGQVGRAFIGTD-AFQ--EVDIFGITLPIVKHSYVVR--DARDISR  149 (585)
T ss_pred             EEEEECCCCcHHHH---HHHHHHHhhcCCCEEEEecCCCccccCCC-Ccc--ccchhhhhcCceeEEEEeC--CHHHHHH
Confidence            45566668888874   5578889999999999985322 111110 011  1244455555544455665  6778999


Q ss_pred             HHHHHHHHHHcc-CCCEEEEEEE
Q 013928          304 VAKEAIERARRG-EGPTLVECET  325 (434)
Q Consensus       304 a~~~Al~~ar~~-~gP~lIev~t  325 (434)
                      .+++|++.++.+ .||+.|++-.
T Consensus       150 ~l~~A~~~A~~~~~GPV~l~iP~  172 (585)
T CHL00099        150 IVAEAFYIAKHGRPGPVLIDIPK  172 (585)
T ss_pred             HHHHHHHHHccCCCCeEEEecCh
Confidence            999999888876 4899999853

>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed

Probab=86.44  E-value=4.2  Score=42.67  Aligned_cols=107  Identities=18%  Similarity=0.173  Sum_probs=71.2

Q ss_pred             cchhhHHHHHHHHHHHhhhhhcCCCceEEEE-eCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCch
Q 013928          200 GIPVATGAAFTSKYRREVLKEADCDHVTLAF-FGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQ  278 (434)
Q Consensus       200 glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~-~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d  278 (434)
                      .+.+++|++++             +.++++. .|-|=..+   +|.|.+|+-..+|+|+++.+-+..-..+.  .....|
T Consensus        68 A~~~~~GAs~a-------------GaRa~TaTS~~Gl~lm---~E~l~~aa~~~~P~V~~~~~R~~~~~~~i--~~d~~D  129 (407)
T PRK09622         68 AMSACVGAAAA-------------GGRVATATSSQGLALM---VEVLYQASGMRLPIVLNLVNRALAAPLNV--NGDHSD  129 (407)
T ss_pred             HHHHHHHHHhh-------------CcCEEeecCcchHHHH---hhHHHHHHHhhCCEEEEEeccccCCCcCC--CchHHH
Confidence            46778888888             3344444 44443334   89999999999998888887762211111  111233


Q ss_pred             hhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHcc--CCCEEEEEEEec
Q 013928          279 IYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRG--EGPTLVECETYR  327 (434)
Q Consensus       279 ~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~--~gP~lIev~t~R  327 (434)
                      +.. ++.-|  .+.+.-.++.++++-...|++.+.+.  .-|+++-...++
T Consensus       130 ~~~-~r~~g--~ivl~p~s~QEa~d~~~~Af~lAE~~~~~~Pviv~~Dg~~  177 (407)
T PRK09622        130 MYL-SRDSG--WISLCTCNPQEAYDFTLMAFKIAEDQKVRLPVIVNQDGFL  177 (407)
T ss_pred             HHH-HhcCC--eEEEeCCCHHHHHHHHHHHHHHHHHhccCCCEEEEechhh
Confidence            332 23334  44566678999999999999988765  789999887765

>TIGR02418 acolac_catab acetolactate synthase, catabolic

Probab=86.43  E-value=5.4  Score=43.09  Aligned_cols=94  Identities=20%  Similarity=0.069  Sum_probs=60.6

Q ss_pred             ceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHH
Q 013928          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV  304 (434)
Q Consensus       225 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a  304 (434)
                      .++++..|=|.++-   .-++..|..-+.|||+|+-.-......  .......|...+++.+--...++  .++.++.+.
T Consensus        63 gv~~~t~GpG~~n~---l~gl~~A~~~~~Pvl~I~G~~~~~~~~--~~~~q~~d~~~~~~~~tk~~~~i--~~~~~~~~~  135 (539)
T TIGR02418        63 GVALVTSGPGCSNL---VTGLATANSEGDPVVAIGGQVKRADLL--KLTHQSMDNVALFRPITKYSAEV--QDPDALSEV  135 (539)
T ss_pred             eEEEECCCCCHhHH---HHHHHHHhhcCCCEEEEeCCCcccccc--cCcccccchhhhhhcceeeeeec--CCHHHHHHH
Confidence            45666668888763   557888999999999998532211100  01111234445555543334455  477788888


Q ss_pred             HHHHHHHHHcc-CCCEEEEEEE
Q 013928          305 AKEAIERARRG-EGPTLVECET  325 (434)
Q Consensus       305 ~~~Al~~ar~~-~gP~lIev~t  325 (434)
                      +.+|++.+..+ .||+.|++-.
T Consensus       136 ~~~A~~~a~~~~~GPV~l~iP~  157 (539)
T TIGR02418       136 VANAFRAAESGKPGAAFVSLPQ  157 (539)
T ss_pred             HHHHHHHHhcCCCCCEEEEcCh
Confidence            99999888876 4899999854

Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.

>PRK08327 acetolactate synthase catalytic subunit; Validated

Probab=86.43  E-value=3.7  Score=44.86  Aligned_cols=95  Identities=16%  Similarity=0.193  Sum_probs=62.5

Q ss_pred             ceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccC-ccc-----ccccccC-chhhhccccCCCcEEEEeCCC
Q 013928          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAI-GMS-----HLRATSD-PQIYKKGPAFGMPGFHVDGMD  297 (434)
Q Consensus       225 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~i-s~~-----~~~~~~~-~d~~~~a~a~Gi~~~~VdG~D  297 (434)
                      .++++..|=|.++.   .-+|..|..-+.|||+|+-+-.+.. +..     ....... .|...+++.+--...+|+  +
T Consensus        77 gv~~~t~GPG~~N~---~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~qe~~d~~~~~~~vtk~~~~v~--~  151 (569)
T PRK08327         77 QAVMVHVDVGTANA---LGGVHNAARSRIPVLVFAGRSPYTEEGELGSRNTRIHWTQEMRDQGGLVREYVKWDYEIR--R  151 (569)
T ss_pred             eEEEEecCHHHHHH---HHHHHHHhhcCCCEEEEeccCCccccccccccccCcccchhhhhHHHHHhhhhhhhcccC--C
Confidence            45666678888763   5578899999999999986533211 000     0000111 255555555544455665  6


Q ss_pred             HHHHHHHHHHHHHHHHcc-CCCEEEEEE
Q 013928          298 VLKVREVAKEAIERARRG-EGPTLVECE  324 (434)
Q Consensus       298 ~~av~~a~~~Al~~ar~~-~gP~lIev~  324 (434)
                      ++++..++.+|++.+..+ .||+.|++-
T Consensus       152 ~~~~~~~l~~A~~~a~~~~~GPV~i~iP  179 (569)
T PRK08327        152 GDQIGEVVARAIQIAMSEPKGPVYLTLP  179 (569)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCEEEECc
Confidence            679999999999998876 699999985

>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed

Probab=86.40  E-value=4.9  Score=42.05  Aligned_cols=111  Identities=20%  Similarity=0.169  Sum_probs=72.2

Q ss_pred             cchhhHHHHHHHHHHHhhhhhcCCCceEE-EEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCch
Q 013928          200 GIPVATGAAFTSKYRREVLKEADCDHVTL-AFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQ  278 (434)
Q Consensus       200 glp~AvGaA~A~k~~~~~~~~~~~d~~vv-~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d  278 (434)
                      .+.+++|++++             +.+++ +..|-|=.-+   +|.|.+|+-..+|+|+++-|-.  ++.+........|
T Consensus        62 A~~~~~GAs~a-------------GaRa~TaTS~~Gl~lm---~E~l~~aag~~lP~V~vv~~R~--~~~p~~i~~d~~D  123 (394)
T PRK08367         62 AISACVGASAA-------------GVRTFTATASQGLALM---HEVLFIAAGMRLPIVMAIGNRA--LSAPINIWNDWQD  123 (394)
T ss_pred             HHHHHHHHHhh-------------CCCeEeeeccchHHHH---hhHHHHHHHccCCEEEEECCCC--CCCCCCcCcchHH
Confidence            46778888888             33444 4445554434   8999999999999888886553  3333221111123


Q ss_pred             hhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHc--cCCCEEEEEEEecCCCCC
Q 013928          279 IYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARR--GEGPTLVECETYRFRGHS  332 (434)
Q Consensus       279 ~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~--~~gP~lIev~t~R~~gHs  332 (434)
                      +. -.+..||-.+.  ..|+.++++-...|++.+..  ..-|+++-...++. +|.
T Consensus       124 ~~-~~rd~g~~~~~--a~~~QEa~D~~~~Af~lAE~~~~~~Pviv~~Dgf~~-sH~  175 (394)
T PRK08367        124 TI-SQRDTGWMQFY--AENNQEALDLILIAFKVAEDERVLLPAMVGFDAFIL-THT  175 (394)
T ss_pred             HH-hccccCeEEEe--CCCHHHHHHHHHHHHHHHHHhCcCCCEEEEechhhh-cCc
Confidence            22 22345655443  47899999988999988874  44799999988875 443

>PLN02573 pyruvate decarboxylase

Probab=84.56  E-value=5.4  Score=43.69  Aligned_cols=97  Identities=14%  Similarity=0.106  Sum_probs=59.8

Q ss_pred             CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccC-cc--cccccccCc---hhhhccccCCCcEEEEeCCC
Q 013928          224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAI-GM--SHLRATSDP---QIYKKGPAFGMPGFHVDGMD  297 (434)
Q Consensus       224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~i-s~--~~~~~~~~~---d~~~~a~a~Gi~~~~VdG~D  297 (434)
                      ..++++..|=|+++-   .-.+..|..-+.|||+|.-.-.... +.  ..+.....+   +....++.+-....+|.  +
T Consensus        79 ~gv~~~t~GpG~~n~---~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~itk~s~~v~--~  153 (578)
T PLN02573         79 VGACVVTFTVGGLSV---LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVIN--N  153 (578)
T ss_pred             CCeEEEecCccHHHH---HHHHHHHHHhCCCEEEEECCCChhhhhcCceeeeecCCCChHHHHHHhhceEEEEEEeC--C
Confidence            456677778888763   4467788899999999985432111 00  000000001   11234444444445555  5


Q ss_pred             HHHHHHHHHHHHHHHHccCCCEEEEEEE
Q 013928          298 VLKVREVAKEAIERARRGEGPTLVECET  325 (434)
Q Consensus       298 ~~av~~a~~~Al~~ar~~~gP~lIev~t  325 (434)
                      +.++.+.+++|++.++...||+.|++-.
T Consensus       154 ~~~~~~~l~~A~~~A~~~~gPV~l~iP~  181 (578)
T PLN02573        154 LEDAHELIDTAISTALKESKPVYISVSC  181 (578)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCEEEEeeh
Confidence            6788888888999888888999999954

>PRK06546 pyruvate dehydrogenase; Provisional

Probab=84.27  E-value=8.7  Score=42.06  Aligned_cols=93  Identities=17%  Similarity=0.025  Sum_probs=57.7

Q ss_pred             eEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHHH
Q 013928          226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVA  305 (434)
Q Consensus       226 ~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~  305 (434)
                      ++++..|=|.++.   .-++..|-.-+.|||+|.-.-....-.....|  ..+...+++.+--...+|.  ++.++...+
T Consensus        69 v~~v~~GpG~~N~---~~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~Q--e~d~~~l~~~~tk~~~~v~--~~~~~~~~i  141 (578)
T PRK06546         69 VCAGSCGPGNLHL---INGLYDAHRSGAPVLAIASHIPSAQIGSGFFQ--ETHPDRLFVECSGYCEMVS--SAEQAPRVL  141 (578)
T ss_pred             EEEECCCCcHHHH---HHHHHHHHhcCCCEEEEeCCCCccccCCCCcc--ccChhhhcccceeeEeEeC--CHHHHHHHH
Confidence            3444557787763   34688899999999999743211100000011  1233444554433344554  667888889


Q ss_pred             HHHHHHHHccCCCEEEEEEE
Q 013928          306 KEAIERARRGEGPTLVECET  325 (434)
Q Consensus       306 ~~Al~~ar~~~gP~lIev~t  325 (434)
                      .+|++.+....||+.|++-.
T Consensus       142 ~~A~~~A~~~~GPV~l~lP~  161 (578)
T PRK06546        142 HSAIQHAVAGGGVSVVTLPG  161 (578)
T ss_pred             HHHHHHHhcCCCCEEEEcCh
Confidence            99999888878999999853

>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family

Probab=83.82  E-value=17  Score=36.04  Aligned_cols=86  Identities=17%  Similarity=0.176  Sum_probs=59.5

Q ss_pred             eEEEEeCccc--cccchHHHHHHHHHHcCCCeEEEEEcCC-ccCccccc----ccccCc-hhhhccccCCCcEEEEeCCC
Q 013928          226 VTLAFFGDGT--CNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHL----RATSDP-QIYKKGPAFGMPGFHVDGMD  297 (434)
Q Consensus       226 ~vv~~~GDGa--~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~~~----~~~~~~-d~~~~a~a~Gi~~~~VdG~D  297 (434)
                      .++.++.||.  +++|..-..+.-|...++-++||+.+|. -.-|.-..    ...... .+......|++|++.|= .|
T Consensus       166 qlilLISDG~~~~~e~~~~~~~r~a~e~~i~l~~I~ld~~~~~~SI~d~~~~~~~~~~~~~l~~Yl~~fpfpYy~~~-~~  244 (266)
T cd01460         166 QLLLIISDGRGEFSEGAQKVRLREAREQNVFVVFIIIDNPDNKQSILDIKVVSFKNDKSGVITPYLDEFPFPYYVIV-RD  244 (266)
T ss_pred             cEEEEEECCCcccCccHHHHHHHHHHHcCCeEEEEEEcCCCCCCCcccccccccCCCCccHHHHHHhcCCCCeEEEe-cC
Confidence            7899999999  7788776778888888999888887664 12221100    001111 55677889999988665 47


Q ss_pred             HHHHHHHHHHHHHHH
Q 013928          298 VLKVREVAKEAIERA  312 (434)
Q Consensus       298 ~~av~~a~~~Al~~a  312 (434)
                      +.++-.++..++++-
T Consensus       245 ~~~lp~~l~~~lrqw  259 (266)
T cd01460         245 LNQLPSVLSDALRQW  259 (266)
T ss_pred             hhHhHHHHHHHHHHH
Confidence            888888888777653

The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.

>PRK06154 hypothetical protein; Provisional

Probab=82.68  E-value=7.1  Score=42.65  Aligned_cols=92  Identities=20%  Similarity=0.185  Sum_probs=58.6

Q ss_pred             eEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHHH
Q 013928          226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVA  305 (434)
Q Consensus       226 ~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~  305 (434)
                      ++++..|=|.++.   .-+|..|..-+.|||+|+-......    .......+...+++.+--...+|+  ++.++.+.+
T Consensus        84 v~~~t~GPG~~N~---~~gla~A~~~~~Pvl~i~G~~~~~~----~~~~~~~d~~~~~~~vtk~~~~v~--~~~~~~~~i  154 (565)
T PRK06154         84 VFAVQYGPGAENA---FGGVAQAYGDSVPVLFLPTGYPRGS----TDVAPNFESLRNYRHITKWCEQVT--LPDEVPELM  154 (565)
T ss_pred             EEEECCCccHHHH---HHHHHHHhhcCCCEEEEeCCCCccc----ccCCCCcchhhhHhhcceeEEECC--CHHHHHHHH
Confidence            3344468888763   5578899999999999984332111    001111233344444433344554  677888999


Q ss_pred             HHHHHHHHcc-CCCEEEEEEEe
Q 013928          306 KEAIERARRG-EGPTLVECETY  326 (434)
Q Consensus       306 ~~Al~~ar~~-~gP~lIev~t~  326 (434)
                      .+|++.++.+ .||+.|++-..
T Consensus       155 ~~A~~~A~s~~~GPV~l~iP~D  176 (565)
T PRK06154        155 RRAFTRLRNGRPGPVVLELPVD  176 (565)
T ss_pred             HHHHHHHhcCCCceEEEecchH
Confidence            9999988875 69999999543

>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase

Probab=81.53  E-value=4.1  Score=42.84  Aligned_cols=96  Identities=10%  Similarity=0.078  Sum_probs=57.2

Q ss_pred             CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCc-cCcccccccccCchhhhccccCCCcEEEEeCCC----H
Q 013928          224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLW-AIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMD----V  298 (434)
Q Consensus       224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y-~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D----~  298 (434)
                      -.++++..|=|.++.   .-++..|-.-+.|||+|.-.-.. ..+.. ..|  ..|...+++.+-....+|...+    +
T Consensus        64 ~gv~~~t~GpG~~N~---l~gl~~A~~~~~Pvl~i~g~~~~~~~~~~-~~q--~~d~~~~~~~~tk~~~~v~~~~~~~~~  137 (432)
T TIGR00173        64 PVAVVCTSGTAVANL---LPAVIEASYSGVPLIVLTADRPPELRGCG-ANQ--TIDQPGLFGSYVRWSLDLPLPEADEPL  137 (432)
T ss_pred             CEEEEECCcchHhhh---hHHHHHhcccCCcEEEEeCCCCHHHhCCC-CCc--ccchhhHHhhccceeeeCCCCCccccH
Confidence            345666668887763   45788888999999999753221 11100 011  1234444554444445554322    1


Q ss_pred             HHHHHHHHHHHHHHHcc-CCCEEEEEEE
Q 013928          299 LKVREVAKEAIERARRG-EGPTLVECET  325 (434)
Q Consensus       299 ~av~~a~~~Al~~ar~~-~gP~lIev~t  325 (434)
                      ..+...+++|++.+..+ .||+.|++-.
T Consensus       138 ~~~~~~i~~A~~~a~~~~~GPV~l~iP~  165 (432)
T TIGR00173       138 AYLRSTVDRAVAQAQGPPPGPVHINVPF  165 (432)
T ss_pred             HHHHHHHHHHHHHhhCCCCCCEEEeCCC
Confidence            22667788888888775 4899999954

2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.

>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]

Probab=80.01  E-value=10  Score=40.11  Aligned_cols=94  Identities=23%  Similarity=0.175  Sum_probs=59.0

Q ss_pred             CCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccC-CCcEEEEeCCCHHH
Q 013928          222 DCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAF-GMPGFHVDGMDVLK  300 (434)
Q Consensus       222 ~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~-Gi~~~~VdG~D~~a  300 (434)
                      +...+|++..|-|+++-   ..-|.-|-.-+.|+|++-  .|..-+..-.+.....|+..+.+++ .|.+.   -.|+++
T Consensus       153 gKPGvvlvTSGPGATNv---vtp~ADAlaDg~PlVvft--GQVptsaIGtDAFQEadiVgisRScTKwNvm---VkdVed  224 (675)
T KOG4166|consen  153 GKPGVVLVTSGPGATNV---VTPLADALADGVPLVVFT--GQVPTSAIGTDAFQEADIVGISRSCTKWNVM---VKDVED  224 (675)
T ss_pred             CCCcEEEEecCCCcccc---cchhhHHhhcCCcEEEEe--cccchhhcccchhccCCeeeeeeccceehee---eecHHH
Confidence            45678999999999973   234666667788866543  3322121111222223444444443 23333   248889


Q ss_pred             HHHHHHHHHHHHHcc-CCCEEEEE
Q 013928          301 VREVAKEAIERARRG-EGPTLVEC  323 (434)
Q Consensus       301 v~~a~~~Al~~ar~~-~gP~lIev  323 (434)
                      +-+-+.+|++.+-.+ .||+|+++
T Consensus       225 lPrrI~EAFeiATSGRPGPVLVDl  248 (675)
T KOG4166|consen  225 LPRRIEEAFEIATSGRPGPVLVDL  248 (675)
T ss_pred             hhHHHHHHhhhhccCCCCCeEeeC
Confidence            999999999988776 58999998

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	434
3exe_A	382	Crystal Structure Of The Pyruvate Dehydrogenase (E1		1e-53
3exf_A	382	Crystal Structure Of The Pyruvate Dehydrogenase (E1		3e-53
2ozl_A	365	Human Pyruvate Dehydrogenase S264e Variant Length =		4e-53
3exi_A	382	Crystal Structure Of The Pyruvate Dehydrogenase (E1		5e-53
3exh_C	382	Crystal Structure Of The Pyruvate Dehydrogenase (E1		1e-52
1ni4_A	365	Human Pyruvate Dehydrogenase Length = 365		1e-48
1um9_A	367	Branched-chain 2-oxo Acid Dehydrogenase (e1) From T		4e-41
1w85_A	368	The Crystal Structure Of Pyruvate Dehydrogenase E1		3e-28
3duf_A	369	Snapshots Of Catalysis In The E1 Subunit Of The Pyr		3e-28
1w88_A	368	The Crystal Structure Of Pyruvate Dehydrogenase E1(		6e-28
3dva_A	369	Snapshots Of Catalysis In The E1 Subunit Of The Pyr		2e-27
2j9f_A	400	Human Branched-Chain Alpha-Ketoacid Dehydrogenase-		2e-24
1dtw_A	400	Human Branched-Chain Alpha-Keto Acid Dehydrogenase		3e-23
2bff_A	400	Reactivity Modulation Of Human Branched-Chain Alpha		5e-23
1x7y_A	400	Crystal Structure Of The Human Mitochondrial Branch		6e-23
1x7w_A	400	Crystal Structure Of The Human Mitochondrial Branch		8e-23
1x7x_A	400	Crystal Structure Of The Human Mitochondrial Branch		8e-23
1x7z_A	400	Crystal Structure Of The Human Mitochondrial Branch		8e-23
1x80_A	400	Crystal Structure Of The Human Mitochondrial Branch		9e-23
1v1m_A	400	Crosstalk Between Cofactor Binding And The Phosphor		2e-22
2bfe_A	400	Reactivity Modulation Of Human Branched-Chain Alpha		4e-22
1olu_A	400	Roles Of His291-Alpha And His146-Beta' In The Reduc		4e-22
2bfb_A	400	Reactivity Modulation Of Human Branched-Chain Alpha		4e-22
1v16_A	400	Crosstalk Between Cofactor Binding And The Phosphor		5e-22
2bfc_A	400	Reactivity Modulation Of Human Branched-Chain Alpha		2e-21
1v11_A	400	Crosstalk Between Cofactor Binding And The Phosphor		3e-21
2bfd_A	400	Reactivity Modulation Of Human Branched-Chain Alpha		6e-21
2bp7_A	410	New Crystal Form Of The Pseudomonas Putida Branched		8e-21
1qs0_A	407	Crystal Structure Of Pseudomonas Putida 2-Oxoisoval		4e-20
3ooy_A	616	Crystal Structure Of Human Transketolase (Tkt) Leng		3e-04
3mos_A	616	The Structure Of Human Transketolase Length = 616		3e-04

>pdb|3EXE|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex Length = 382

Iteration: 1
 Score =  207 bits (526), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 123/331 (37%), Positives = 183/331 (55%), Gaps = 16/331 (4%)
Query: 83  LITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSV 142
           ++T+++GL+ Y  M   R  E    Q+Y +  + GF HL +GQEA   G    +   D +
Sbjct: 47  VLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHL 106
Query: 143 VSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIP 202
           ++ YR H    ++G+  R +++EL G+  GC +G+GGSMHM++K  N  GG   +G  +P
Sbjct: 107 ITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVP 164
Query: 203 VATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN 262
           +  G A   KY  +       D V L  +GDG  N GQ FE  NMAALWKLP +F+ ENN
Sbjct: 165 LGAGIALACKYNGK-------DEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENN 217
Query: 263 LWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVE 322
            + +G S  RA +    YK+G    +PG  VDGMD+L VRE  + A    R G+GP L+E
Sbjct: 218 RYGMGTSVERAAASTDYYKRGDF--IPGLRVDGMDILCVREATRFAAAYCRSGKGPILME 275
Query: 323 CETYRFRGHSLADPD---ELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKI 379
            +TYR+ GHS++DP      R+  ++ R +  DPI  LK  ++ S+LAS  ELK I+ ++
Sbjct: 276 LQTYRYHGHSMSDPGVSYRTREEIQEVR-SKSDPIMLLKDRMVNSNLASVEELKEIDVEV 334
Query: 380 XXXXXXXXXXXXXXXPPPRSQLLENVF-ADP 409
                           PP  +L  +++ +DP
Sbjct: 335 RKEIEDAAQFATADPEPPLEELGYHIYSSDP 365

>pdb|3EXF|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex Length = 382

Iteration: 1
 Score =  206 bits (523), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 122/331 (36%), Positives = 183/331 (55%), Gaps = 16/331 (4%)
Query: 83  LITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSV 142
           ++T+++GL+ Y  M   R  E    Q+Y +  + GF HL +GQEA   G    +   D +
Sbjct: 47  VLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHL 106
Query: 143 VSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIP 202
           ++ YR H    ++G+  R +++EL G+  GC +G+GGSMHM++K  N  GG   +G  +P
Sbjct: 107 ITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVP 164
Query: 203 VATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN 262
           +  G A   KY  +       D V L  +GDG  N GQ FE  NMAALWKLP +F+ ENN
Sbjct: 165 LGAGIALACKYNGK-------DEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENN 217
Query: 263 LWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVE 322
            + +G +  RA +    YK+G    +PG  VDGMD+L VRE  + A    R G+GP L+E
Sbjct: 218 RYGMGTAVERAAASTDYYKRGDF--IPGLRVDGMDILCVREATRFAAAYCRSGKGPILME 275
Query: 323 CETYRFRGHSLADPD---ELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKI 379
            +TYR+ GHS++DP      R+  ++ R +  DPI  LK  ++ S+LAS  ELK I+ ++
Sbjct: 276 LQTYRYHGHSMSDPGVAYRTREEIQEVR-SKSDPIMLLKDRMVNSNLASVEELKEIDVEV 334
Query: 380 XXXXXXXXXXXXXXXPPPRSQLLENVF-ADP 409
                           PP  +L  +++ +DP
Sbjct: 335 RKEIEDAAQFATADPEPPLEELGYHIYSSDP 365

>pdb|2OZL|A Chain A, Human Pyruvate Dehydrogenase S264e Variant Length = 365

Iteration: 1
 Score =  205 bits (522), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 122/331 (36%), Positives = 182/331 (54%), Gaps = 16/331 (4%)
Query: 83  LITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSV 142
           ++T+++GL+ Y  M   R  E    Q+Y +  + GF HL +GQEA   G    +   D +
Sbjct: 30  VLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHL 89
Query: 143 VSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIP 202
           ++ YR H    ++G+  R +++EL G+  GC +G+GGSMHM++K  N  GG   +G  +P
Sbjct: 90  ITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVP 147
Query: 203 VATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN 262
           +  G A   KY  +       D V L  +GDG  N GQ FE  NMAALWKLP +F+ ENN
Sbjct: 148 LGAGIALACKYNGK-------DEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENN 200
Query: 263 LWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVE 322
            + +G S  RA +    YK+G    +PG  VDGMD+L VRE  + A    R G+GP L+E
Sbjct: 201 RYGMGTSVERAAASTDYYKRGDF--IPGLRVDGMDILCVREATRFAAAYCRSGKGPILME 258
Query: 323 CETYRFRGHSLADPD---ELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKI 379
            +TYR+ GH ++DP      R+  ++ R +  DPI  LK  ++ S+LAS  ELK I+ ++
Sbjct: 259 LQTYRYHGHEMSDPGVSYRTREEIQEVR-SKSDPIMLLKDRMVNSNLASVEELKEIDVEV 317
Query: 380 XXXXXXXXXXXXXXXPPPRSQLLENVF-ADP 409
                           PP  +L  +++ +DP
Sbjct: 318 RKEIEDAAQFATADPEPPLEELGYHIYSSDP 348

>pdb|3EXI|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex With The Subunit-Binding Domain (Sbd) Of E2p, But Sbd Cannot Be Modeled Into The Electron Density Length = 382

Iteration: 1
 Score =  205 bits (521), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 122/331 (36%), Positives = 183/331 (55%), Gaps = 16/331 (4%)
Query: 83  LITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSV 142
           ++T+++GL+ Y  M   R  E    Q+Y +  + GF HL +GQEA   G    +   D +
Sbjct: 47  VLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHL 106
Query: 143 VSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIP 202
           ++ +R H    ++G+  R +++EL G+  GC +G+GGSMHM++K  N  GG   +G  +P
Sbjct: 107 ITAFRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVP 164
Query: 203 VATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN 262
           +  G A   KY  +       D V L  +GDG  N GQ FE  NMAALWKLP +F+ ENN
Sbjct: 165 LGAGIALACKYNGK-------DEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENN 217
Query: 263 LWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVE 322
            + +G S  RA +    YK+G    +PG  VDGMD+L VRE  + A    R G+GP L+E
Sbjct: 218 RYGMGTSVERAAASTDYYKRGDF--IPGLRVDGMDILCVREATRFAAAYCRSGKGPILME 275
Query: 323 CETYRFRGHSLADPD---ELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKI 379
            +TYR+ GHS++DP      R+  ++ R +  DPI  LK  ++ S+LAS  ELK I+ ++
Sbjct: 276 LQTYRYHGHSMSDPGVSYRTREEIQEVR-SKSDPIMLLKDRMVNSNLASVEELKEIDVEV 334
Query: 380 XXXXXXXXXXXXXXXPPPRSQLLENVF-ADP 409
                           PP  +L  +++ +DP
Sbjct: 335 RKEIEDAAQFATADPEPPLEELGYHIYSSDP 365

>pdb|3EXH|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex Length = 382

Iteration: 1
 Score =  204 bits (518), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 121/331 (36%), Positives = 182/331 (54%), Gaps = 16/331 (4%)
Query: 83  LITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSV 142
           ++T+++GL+ Y  M   R  E    Q+Y +  + GF HL +GQEA   G    +   D +
Sbjct: 47  VLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHL 106
Query: 143 VSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIP 202
           ++ YR H    ++G+  R +++EL G+  GC +G+GGSMHM++K  N  GG   +G  +P
Sbjct: 107 ITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVP 164
Query: 203 VATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN 262
           +  G A   KY  +       D V L  +GDG  N GQ FE  NMAALWKLP +F+ ENN
Sbjct: 165 LGAGIALACKYNGK-------DEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENN 217
Query: 263 LWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVE 322
            + +G +  RA +    YK+G    +PG  VDGMD+L VRE  + A    R G+GP L+E
Sbjct: 218 RYGMGTAVERAAASTDYYKRGDF--IPGLRVDGMDILCVREATRFAAAYCRSGKGPILME 275
Query: 323 CETYRFRGHSLADPD---ELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKI 379
            +TYR+ GH ++DP      R+  ++ R +  DPI  LK  ++ S+LAS  ELK I+ ++
Sbjct: 276 LQTYRYHGHXMSDPGVAYRTREEIQEVR-SKSDPIMLLKDRMVNSNLASVEELKEIDVEV 334
Query: 380 XXXXXXXXXXXXXXXPPPRSQLLENVF-ADP 409
                           PP  +L  +++ +DP
Sbjct: 335 RKEIEDAAQFATADPEPPLEELGYHIYSSDP 365

>pdb|1NI4|A Chain A, Human Pyruvate Dehydrogenase Length = 365

Iteration: 1
 Score =  190 bits (483), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 118/331 (35%), Positives = 174/331 (52%), Gaps = 16/331 (4%)
Query: 83  LITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSV 142
           ++T+++GL+ Y      R  E    Q+Y +  + GF HL +GQEA   G    +   D +
Sbjct: 30  VLTREDGLKYYRXXQTVRRXELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHL 89
Query: 143 VSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIP 202
           ++ YR H    ++G+  R +++EL G+  GC +G+GGS H ++K  N  GG   +G  +P
Sbjct: 90  ITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSXHXYAK--NFYGGNGIVGAQVP 147
Query: 203 VATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN 262
           +  G A   KY  +       D V L  +GDG  N GQ FE  N AALWKLP +F+ ENN
Sbjct: 148 LGAGIALACKYNGK-------DEVCLTLYGDGAANQGQIFEAYNXAALWKLPCIFICENN 200
Query: 263 LWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVE 322
            +  G S  RA +    YK+G    +PG  VDG D+L VRE  + A    R G+GP L E
Sbjct: 201 RYGXGTSVERAAASTDYYKRGDF--IPGLRVDGXDILCVREATRFAAAYCRSGKGPILXE 258
Query: 323 CETYRFRGHSLADPD---ELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKI 379
            +TYR+ GHS +DP      R+  ++ R +  DPI  LK   + S+LAS  ELK I+ ++
Sbjct: 259 LQTYRYHGHSXSDPGVSYRTREEIQEVR-SKSDPIXLLKDRXVNSNLASVEELKEIDVEV 317
Query: 380 XXXXXXXXXXXXXXXPPPRSQLLENVF-ADP 409
                           PP  +L  +++ +DP
Sbjct: 318 RKEIEDAAQFATADPEPPLEELGYHIYSSDP 348

>pdb|1UM9|A Chain A, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus Thermophilus Hb8 In Apo-form Length = 367

Iteration: 1
 Score =  165 bits (418), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 106/319 (33%), Positives = 154/319 (48%), Gaps = 10/319 (3%)
Query: 92  LYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKE-DSVVSTYRDHV 150
           LY DM+  R  ++    +   GK   F+    G EA        ++   D V   YRDH 
Sbjct: 41  LYRDMLAARMLDERYTILIRTGKT-SFIAPAAGHEAAQVAIAHAIRPGFDWVFPYYRDHG 99
Query: 151 HALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFT 210
            AL+ G+P + ++ ++        +G+    H  SK  N     + I   +P A GAA +
Sbjct: 100 LALALGIPLKELLGQMLATKADPNKGRQMPEHPGSKALNFFTVASPIASHVPPAAGAAIS 159
Query: 211 SKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH 270
            K  R          V +  FGDG  + G ++  +N AA+   P VF+ ENN +AI + +
Sbjct: 160 MKLLR-------TGQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNFYAISVDY 212
Query: 271 LRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRG 330
              T  P I  K  AFG+PG+ VDGMDVL    V KEA+ERARRGEGP+LVE   YR+  
Sbjct: 213 RHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERARRGEGPSLVELRVYRYGP 272
Query: 331 HSLADPDELRDPAEK-ARYAARDPITALKKYLIESSLASEAELKAIEKKIXXXXXXXXXX 389
           HS AD D    P E+ A +  +DPI   +++L    L +E   + + ++I          
Sbjct: 273 HSSADDDSRYRPKEEVAFWRKKDPIPRFRRFLEARGLWNEEWEEDVREEIRAELERGLKE 332
Query: 390 XXXXXPPPRSQLLENVFAD 408
                P P   + E+VFA+
Sbjct: 333 AEEAGPVPPEWMFEDVFAE 351

>pdb|1W85|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound To The Peripheral Subunit Binding Domain Of E2 Length = 368

Iteration: 1
 Score =  122 bits (307), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 89/283 (31%), Positives = 132/283 (46%), Gaps = 19/283 (6%)
Query: 91  ELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHV 150
           EL   M+  R  +     +  +G++ GF     GQEA        L+KED ++  YRD  
Sbjct: 48  ELMRRMVYTRILDQRSISLNRQGRL-GFYAPTAGQEASQIASHFALEKEDFILPGYRDVP 106
Query: 151 HALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFT 210
             +  G+P    + + F  + G   G     +   +  N+L     IG     A G A  
Sbjct: 107 QIIWHGLP----LYQAFLFSRGHFHG-----NQIPEGVNVLPPQIIIGAQYIQAAGVALG 157
Query: 211 SKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH 270
            K R +         V + + GDG  + G F+E +N A  +K P +FVV+NN +AI    
Sbjct: 158 LKMRGK-------KAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAISTPV 210
Query: 271 LRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRG 330
            + T    + +K  A G+PG  VDGMD L V    K A ERA  GEGPTL+E   +R+  
Sbjct: 211 EKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYGP 270
Query: 331 HSLA--DPDELRDPAEKARYAARDPITALKKYLIESSLASEAE 371
           H+++  DP   R    +  +A +DP+   +K+L    L SE E
Sbjct: 271 HTMSGDDPTRYRSKELENEWAKKDPLVRFRKFLEAKGLWSEEE 313

>pdb|3DUF|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate Dehydrogenase Multi-Enzyme Complex Length = 369

Iteration: 1
 Score =  122 bits (307), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 89/283 (31%), Positives = 132/283 (46%), Gaps = 19/283 (6%)
Query: 91  ELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHV 150
           EL   M+  R  +     +  +G++ GF     GQEA        L+KED ++  YRD  
Sbjct: 49  ELMRRMVYTRILDQRSISLNRQGRL-GFYAPTAGQEASQIASHFALEKEDFILPGYRDVP 107
Query: 151 HALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFT 210
             +  G+P    + + F  + G   G     +   +  N+L     IG     A G A  
Sbjct: 108 QIIWHGLP----LYQAFLFSRGHFHG-----NQIPEGVNVLPPQIIIGAQYIQAAGVALG 158
Query: 211 SKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH 270
            K R +         V + + GDG  + G F+E +N A  +K P +FVV+NN +AI    
Sbjct: 159 LKMRGK-------KAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAISTPV 211
Query: 271 LRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRG 330
            + T    + +K  A G+PG  VDGMD L V    K A ERA  GEGPTL+E   +R+  
Sbjct: 212 EKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYGP 271
Query: 331 HSLA--DPDELRDPAEKARYAARDPITALKKYLIESSLASEAE 371
           H+++  DP   R    +  +A +DP+   +K+L    L SE E
Sbjct: 272 HTMSGDDPTRYRSKELENEWAKKDPLVRFRKFLEAKGLWSEEE 314

>pdb|1W88|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n, E183q) Bound To The Peripheral Subunit Binding Domain Of E2 Length = 368

Iteration: 1
 Score =  121 bits (304), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 88/283 (31%), Positives = 132/283 (46%), Gaps = 19/283 (6%)
Query: 91  ELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHV 150
           EL   M+  R  +     +  +G++ GF     GQEA        L+KED ++  YRD  
Sbjct: 48  ELMRRMVYTRILDQRSISLNRQGRL-GFYAPTAGQEASQIASHFALEKEDFILPGYRDVP 106
Query: 151 HALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFT 210
             +  G+P    + + F  + G   G     +   +  N+L     IG     A G A  
Sbjct: 107 QIIWHGLP----LYQAFLFSRGHFHG-----NQIPEGVNVLPPQIIIGAQYIQAAGVALG 157
Query: 211 SKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH 270
            K R +         V + + GDG  + G F++ +N A  +K P +FVV+NN +AI    
Sbjct: 158 LKMRGK-------KAVAITYTGDGGTSQGNFYQGINFAGAFKAPAIFVVQNNRFAISTPV 210
Query: 271 LRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRG 330
            + T    + +K  A G+PG  VDGMD L V    K A ERA  GEGPTL+E   +R+  
Sbjct: 211 EKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYGP 270
Query: 331 HSLA--DPDELRDPAEKARYAARDPITALKKYLIESSLASEAE 371
           H+++  DP   R    +  +A +DP+   +K+L    L SE E
Sbjct: 271 HTMSGDDPTRYRSKELENEWAKKDPLVRFRKFLEAKGLWSEEE 313

>pdb|3DVA|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate Dehydrogenase Multi-Enzyme Complex Length = 369

Iteration: 1
 Score =  120 bits (301), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/283 (31%), Positives = 131/283 (46%), Gaps = 19/283 (6%)
Query: 91  ELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHV 150
           EL   M+  R  +     +  +G++ GF     GQEA        L+KED ++  YRD  
Sbjct: 49  ELMRRMVYTRILDQRSISLNRQGRL-GFYAPTAGQEASQIASHFALEKEDFILPGYRDVP 107
Query: 151 HALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFT 210
             +  G+P    + + F  + G   G     +   +  N+L     IG     A G A  
Sbjct: 108 QIIWHGLP----LYQAFLFSRGHFHG-----NQIPEGVNVLPPQIIIGAQYIQAAGVALG 158
Query: 211 SKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH 270
            K R +         V + + GDG  + G F+E +N A  +K P +FVV+NN +A     
Sbjct: 159 LKMRGK-------KAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAASTPV 211
Query: 271 LRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRG 330
            + T    + +K  A G+PG  VDGMD L V    K A ERA  GEGPTL+E   +R+  
Sbjct: 212 EKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYGP 271
Query: 331 HSLA--DPDELRDPAEKARYAARDPITALKKYLIESSLASEAE 371
           H+++  DP   R    +  +A +DP+   +K+L    L SE E
Sbjct: 272 HTMSGDDPTRYRSKELENEWAKKDPLVRFRKFLEAKGLWSEEE 314

>pdb|2J9F|A Chain A, Human Branched-Chain Alpha-Ketoacid Dehydrogenase- Decarboxylase E1b Length = 400

Iteration: 1
 Score =  109 bits (273), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 134/297 (45%), Gaps = 10/297 (3%)
Query: 84  ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 143
           + K++ L+LY+ M L  + + +  +   +G++  ++  Y G+E    G    L   D V 
Sbjct: 52  LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY-GEEGTHVGSAAALDNTDLVF 110
Query: 144 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 203
             YR+    + +  P    M++ +G  +   +G+   +H   KE + +   + +   IP 
Sbjct: 111 GQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQ 170
Query: 204 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 263
           A GAA+ +K        A+ + V + +FG+G  + G      N AA  + PI+F   NN 
Sbjct: 171 AVGAAYAAK-------RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNG 223
Query: 264 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323
           +AI            I  +GP +G+    VDG DV  V    KEA  RA     P L+E 
Sbjct: 224 YAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEA 283
Query: 324 ETYRFRGHSLADPDELRDPAEKARYAARD--PITALKKYLIESSLASEAELKAIEKK 378
            TYR   HS +D      P ++  Y  +   PI+ L+ YL+      E + KA  K+
Sbjct: 284 MTYRIGHHSTSDDSSAYRPVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQ 340

>pdb|1DTW|A Chain A, Human Branched-Chain Alpha-Keto Acid Dehydrogenase Length = 400

Iteration: 1
 Score =  106 bits (264), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 133/297 (44%), Gaps = 10/297 (3%)
Query: 84  ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 143
           + K++ L+LY+ M L  + + +  +   +G++  ++  Y G+E    G    L   D V 
Sbjct: 52  LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY-GEEGTHVGSAAALDNTDLVF 110
Query: 144 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 203
             YR+    + +  P    M++ +G  +   +G+   +H   KE + +   + +   IP 
Sbjct: 111 GQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQ 170
Query: 204 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 263
           A GAA+ +K        A+ + V + +FG+G  + G      N AA  + PI+F   NN 
Sbjct: 171 AVGAAYAAK-------RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNG 223
Query: 264 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323
           +AI            I  +GP +G+    VDG DV  V    KEA  RA     P L+E 
Sbjct: 224 YAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEA 283
Query: 324 ETYRFRGHSLADPDELRDPAEKARYAARD--PITALKKYLIESSLASEAELKAIEKK 378
            TYR   HS +D        ++  Y  +   PI+ L+ YL+      E + KA  K+
Sbjct: 284 MTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQ 340

>pdb|2BFF|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400

Iteration: 1
 Score =  105 bits (262), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 133/297 (44%), Gaps = 10/297 (3%)
Query: 84  ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 143
           + K++ L+LY+ M L  + + +  +   +G++  ++  Y G+E    G    L   D V 
Sbjct: 52  LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY-GEEGTHVGSAAALDNTDLVF 110
Query: 144 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 203
             YR+    + +  P    M++ +G  +   +G+   +H   KE + +   + +   IP 
Sbjct: 111 GQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQ 170
Query: 204 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 263
           A GAA+ +K        A+ + V + +FG+G  + G      N AA  + PI+F   NN 
Sbjct: 171 AVGAAYAAK-------RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNG 223
Query: 264 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323
           +AI            I  +GP +G+    VDG DV  V    KEA  RA     P L+E 
Sbjct: 224 YAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEA 283
Query: 324 ETYRFRGHSLADPDELRDPAEKARYAARD--PITALKKYLIESSLASEAELKAIEKK 378
            TYR   HS +D        ++  Y  +   PI+ L+ YL+      E + KA  K+
Sbjct: 284 MTYRIGHHSTSDDSSAYRSVDEVGYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQ 340

>pdb|1X7Y|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-chain Alpha- Ketoacid Dehydrogenase Length = 400

Iteration: 1
 Score =  105 bits (261), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 133/297 (44%), Gaps = 10/297 (3%)
Query: 84  ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 143
           + K++ L+LY+ M L  + + +  +   +G++  ++  Y G+E    G    L   D V 
Sbjct: 52  LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY-GEEGTHVGSAAALDNTDLVF 110
Query: 144 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 203
             YR+    + +  P    M++ +G  +   +G+   +H   KE + +   + +   IP 
Sbjct: 111 GQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQ 170
Query: 204 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 263
           A GAA+ +K        A+ + V + +FG+G  + G      N AA  + PI+F   NN 
Sbjct: 171 AVGAAYAAK-------RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNG 223
Query: 264 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323
           +AI            I  +GP +G+    VDG DV  V    KEA  RA     P L+E 
Sbjct: 224 YAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEA 283
Query: 324 ETYRFRGHSLADPDELRDPAEKARYAARD--PITALKKYLIESSLASEAELKAIEKK 378
            TYR   H+ +D        ++  Y  +   PI+ L+ YL+      E + KA  K+
Sbjct: 284 MTYRIGHHNTSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQ 340

>pdb|1X7W|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-Chain Alpha- Ketoacid Dehydrogenase Length = 400

Iteration: 1
 Score =  104 bits (260), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 132/297 (44%), Gaps = 10/297 (3%)
Query: 84  ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 143
           + K++ L+LY+ M L  + + +  +   +G++  ++  Y G+E    G    L   D V 
Sbjct: 52  LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY-GEEGTHVGSAAALDNTDLVF 110
Query: 144 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 203
             YR+    + +  P    M++ +G  +   +G+   +H   KE + +   + +   IP 
Sbjct: 111 GQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQ 170
Query: 204 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 263
           A GAA+ +K        A+ + V + +FG+G  + G      N AA  + PI+F   NN 
Sbjct: 171 AVGAAYAAK-------RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNG 223
Query: 264 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323
           +AI            I  +GP +G+    VDG DV  V    KEA  RA     P L+E 
Sbjct: 224 YAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEA 283
Query: 324 ETYRFRGHSLADPDELRDPAEKARYAARD--PITALKKYLIESSLASEAELKAIEKK 378
            TYR   H  +D        ++  Y  +   PI+ L+ YL+      E + KA  K+
Sbjct: 284 MTYRIGHHQTSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQ 340

>pdb|1X7X|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-Chain Alpha- Ketoacid Dehydrogenase Length = 400

Iteration: 1
 Score =  104 bits (260), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 132/297 (44%), Gaps = 10/297 (3%)
Query: 84  ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 143
           + K++ L+LY+ M L  + + +  +   +G++  ++  Y G+E    G    L   D V 
Sbjct: 52  LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY-GEEGTHVGSAAALDNTDLVF 110
Query: 144 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 203
             YR+    + +  P    M++ +G  +   +G+   +H   KE + +   + +   IP 
Sbjct: 111 GQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQ 170
Query: 204 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 263
           A GAA+ +K        A+ + V + +FG+G  + G      N AA  + PI+F   NN 
Sbjct: 171 AVGAAYAAK-------RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNG 223
Query: 264 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323
           +AI            I  +GP +G+    VDG DV  V    KEA  RA     P L+E 
Sbjct: 224 YAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEA 283
Query: 324 ETYRFRGHSLADPDELRDPAEKARYAARD--PITALKKYLIESSLASEAELKAIEKK 378
            TYR   H  +D        ++  Y  +   PI+ L+ YL+      E + KA  K+
Sbjct: 284 MTYRIGHHETSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQ 340

>pdb|1X7Z|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-Chain Alpha- Ketoacid Dehydrogenase Length = 400

Iteration: 1
 Score =  104 bits (260), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 132/297 (44%), Gaps = 10/297 (3%)
Query: 84  ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 143
           + K++ L+LY+ M L  + + +  +   +G++  ++  Y G+E    G    L   D V 
Sbjct: 52  LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY-GEEGTHVGSAAALDNTDLVF 110
Query: 144 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 203
             YR+    + +  P    M++ +G  +   +G+   +H   KE + +   + +   IP 
Sbjct: 111 GQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQ 170
Query: 204 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 263
           A GAA+ +K        A+ + V + +FG+G  + G      N AA  + PI+F   NN 
Sbjct: 171 AVGAAYAAK-------RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNG 223
Query: 264 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323
           +AI            I  +GP +G+    VDG DV  V    KEA  RA     P L+E 
Sbjct: 224 YAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEA 283
Query: 324 ETYRFRGHSLADPDELRDPAEKARYAARD--PITALKKYLIESSLASEAELKAIEKK 378
            TYR   H  +D        ++  Y  +   PI+ L+ YL+      E + KA  K+
Sbjct: 284 MTYRIGHHDTSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQ 340

>pdb|1X80|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-chain Alpha- Ketoacid Dehydrogenase Length = 400

Iteration: 1
 Score =  104 bits (260), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 132/297 (44%), Gaps = 10/297 (3%)
Query: 84  ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 143
           + K++ L+LY+ M L  + + +  +   +G++  ++  Y G+E    G    L   D V 
Sbjct: 52  LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY-GEEGTHVGSAAALDNTDLVF 110
Query: 144 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 203
             YR+    + +  P    M++ +G  +   +G+   +H   KE + +   + +   IP 
Sbjct: 111 GQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQ 170
Query: 204 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 263
           A GAA+ +K        A+ + V + +FG+G  + G      N AA  + PI+F   NN 
Sbjct: 171 AVGAAYAAK-------RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNG 223
Query: 264 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323
           +AI            I  +GP +G+    VDG DV  V    KEA  RA     P L+E 
Sbjct: 224 YAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEA 283
Query: 324 ETYRFRGHSLADPDELRDPAEKARYAARD--PITALKKYLIESSLASEAELKAIEKK 378
            TYR   H  +D        ++  Y  +   PI+ L+ YL+      E + KA  K+
Sbjct: 284 MTYRIGHHXTSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQ 340

>pdb|1V1M|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation Loop Conformation In The Bckd Machine Length = 400

Iteration: 1
 Score =  103 bits (257), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 135/298 (45%), Gaps = 12/298 (4%)
Query: 84  ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 143
           + K++ L+LY+ M L  + + +  +   +G++  ++  Y G+E    G    L   D V 
Sbjct: 52  LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY-GEEGTHVGSAAALDNTDLVF 110
Query: 144 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 203
             YR+    + +  P    M++ +G  +   +G+   +H   KE + +   + +   IP 
Sbjct: 111 GQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQ 170
Query: 204 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 263
           A GAA+ +K        A+ + V + +FG+G  + G      N AA  + PI+F   NN 
Sbjct: 171 AVGAAYAAK-------RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNG 223
Query: 264 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323
           +AI            I  +GP +G+    VDG DV  V    KEA  RA     P L+E 
Sbjct: 224 YAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEA 283
Query: 324 ETYRFRGH--SLADPDELRDPAEKARYAARD-PITALKKYLIESSLASEAELKAIEKK 378
            TYR  GH  + AD    R   E   +  +D PI+ L+ YL+      E + KA  K+
Sbjct: 284 MTYRI-GHASTSADSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQ 340

>pdb|2BFE|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400

Iteration: 1
 Score =  102 bits (254), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 132/297 (44%), Gaps = 10/297 (3%)
Query: 84  ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 143
           + K++ L+LY+ M L  + + +  +   +G++  ++  Y G+E    G    L   D V 
Sbjct: 52  LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY-GEEGTHVGSAAALDNTDLVF 110
Query: 144 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 203
              R+    + +  P    M++ +G  +   +G+   +H   KE + +   + +   IP 
Sbjct: 111 GAAREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQ 170
Query: 204 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 263
           A GAA+ +K        A+ + V + +FG+G  + G      N AA  + PI+F   NN 
Sbjct: 171 AVGAAYAAK-------RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNG 223
Query: 264 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323
           +AI            I  +GP +G+    VDG DV  V    KEA  RA     P L+E 
Sbjct: 224 YAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEA 283
Query: 324 ETYRFRGHSLADPDELRDPAEKARYAARD--PITALKKYLIESSLASEAELKAIEKK 378
            TYR   HS +D        ++  Y  +   PI+ L+ YL+      E + KA  K+
Sbjct: 284 MTYRIGHHSTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQ 340

>pdb|1OLU|A Chain A, Roles Of His291-Alpha And His146-Beta' In The Reductive Acylation Reaction Catalyzed By Human Branched-Chain Alpha-Ketoacid Dehydrogenase Length = 400

Iteration: 1
 Score =  102 bits (254), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 132/297 (44%), Gaps = 10/297 (3%)
Query: 84  ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 143
           + K++ L+LY+ M L  + + +  +   +G++  ++  Y G+E    G    L   D V 
Sbjct: 52  LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY-GEEGTHVGSAAALDNTDLVF 110
Query: 144 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 203
             YR+    + +  P    M++ +G  +   +G+   +H   KE + +   + +   IP 
Sbjct: 111 GQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQ 170
Query: 204 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 263
           A GAA+ +K        A+ + V + +FG+G  + G      N AA  + PI+F   NN 
Sbjct: 171 AVGAAYAAK-------RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNG 223
Query: 264 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323
           +AI            I  +GP +G+    VDG DV  V    KEA  RA     P L+E 
Sbjct: 224 YAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEA 283
Query: 324 ETYRFRGHSLADPDELRDPAEKARYAARD--PITALKKYLIESSLASEAELKAIEKK 378
            TYR    S +D        ++  Y  +   PI+ L+ YL+      E + KA  K+
Sbjct: 284 MTYRIGHASTSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQ 340

>pdb|2BFB|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400

Iteration: 1
 Score =  102 bits (254), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 134/298 (44%), Gaps = 12/298 (4%)
Query: 84  ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 143
           + K++ L+LY+ M L  + + +  +   +G++  ++  Y G+E    G    L   D V 
Sbjct: 52  LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY-GEEGTHVGSAAALDNTDLVF 110
Query: 144 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 203
             YR+    + +  P    M++ +G  +   +G+   +H   KE + +   + +   IP 
Sbjct: 111 GAYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQ 170
Query: 204 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 263
           A GAA+ +K        A+ + V + +FG+G  + G      N AA  + PI+F   NN 
Sbjct: 171 AVGAAYAAK-------RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNG 223
Query: 264 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323
           +AI            I  +GP +G+    VDG DV  V    KEA  RA     P L+E 
Sbjct: 224 YAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEA 283
Query: 324 ETYRFRGHSLADPDE--LRDPAEKARYAARD-PITALKKYLIESSLASEAELKAIEKK 378
            TYR  GH+    D    R   E   +  +D PI+ L+ YL+      E + KA  K+
Sbjct: 284 MTYRI-GHASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQ 340

>pdb|1V16|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation Loop Conformation In The Bckd Machine Length = 400

Iteration: 1
 Score =  102 bits (253), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 134/298 (44%), Gaps = 12/298 (4%)
Query: 84  ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 143
           + K++ L+LY+ M L  + + +  +   +G++  ++  Y G+E    G    L   D V 
Sbjct: 52  LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY-GEEGTHVGSAAALDNTDLVF 110
Query: 144 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 203
             YR+    + +  P    M++ +G  +   +G+   +H   KE + +   + +   IP 
Sbjct: 111 GQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQ 170
Query: 204 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 263
           A GAA+ +K        A+ + V + +FG+G  + G      N AA  + PI+F   NN 
Sbjct: 171 AVGAAYAAK-------RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNG 223
Query: 264 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323
           +AI            I  +GP +G+    VDG DV  V    KEA  RA     P L+E 
Sbjct: 224 YAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEA 283
Query: 324 ETYRFRGHSLADPDE--LRDPAEKARYAARD-PITALKKYLIESSLASEAELKAIEKK 378
            TYR  GH+    D    R   E   +  +D PI+ L+ YL+      E + KA  K+
Sbjct: 284 MTYRI-GHASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQ 340

>pdb|2BFC|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400

Iteration: 1
 Score =  100 bits (249), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 134/298 (44%), Gaps = 12/298 (4%)
Query: 84  ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 143
           + K++ L+LY+ M L  + + +  +   +G++  ++  Y G+E    G    L   D V 
Sbjct: 52  LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY-GEEGTHVGSAAALDNTDLVF 110
Query: 144 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 203
             +R+    + +  P    M++ +G  +   +G+   +H   KE + +   + +   IP 
Sbjct: 111 GQFREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQ 170
Query: 204 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 263
           A GAA+ +K        A+ + V + +FG+G  + G      N AA  + PI+F   NN 
Sbjct: 171 AVGAAYAAK-------RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNG 223
Query: 264 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323
           +AI            I  +GP +G+    VDG DV  V    KEA  RA     P L+E 
Sbjct: 224 YAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEA 283
Query: 324 ETYRFRGHSLADPDE--LRDPAEKARYAARD-PITALKKYLIESSLASEAELKAIEKK 378
            TYR  GH+    D    R   E   +  +D PI+ L+ YL+      E + KA  K+
Sbjct: 284 MTYRI-GHASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQ 340

>pdb|1V11|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation Loop Conformation In The Bckd Machine Length = 400

Iteration: 1
 Score = 99.8 bits (247), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 131/297 (44%), Gaps = 10/297 (3%)
Query: 84  ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 143
           + K++ L+LY+ M L  + + +  +   +G++  ++  Y G+E    G    L   D V 
Sbjct: 52  LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY-GEEGTHVGSAAALDNTDLVF 110
Query: 144 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 203
             YR+    + +  P    M++ +G  +   +G+   +H   KE + +   + +   IP 
Sbjct: 111 GQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQ 170
Query: 204 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 263
           A GAA+ +K        A+ + V + +FG+G  + G      N AA  + PI+F   NN 
Sbjct: 171 AVGAAYAAK-------RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNG 223
Query: 264 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323
           +AI            I  +GP +G+    VDG DV  V    KEA  RA     P L+E 
Sbjct: 224 YAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEA 283
Query: 324 ETYRFRGHSLADPDELRDPAEKARYAARD--PITALKKYLIESSLASEAELKAIEKK 378
            TY     S +D        ++  Y  +   PI+ L+ YL+      E + KA  K+
Sbjct: 284 MTYAIGHASTSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQ 340

>pdb|2BFD|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400

Iteration: 1
 Score = 98.6 bits (244), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 133/298 (44%), Gaps = 12/298 (4%)
Query: 84  ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 143
           + K++ L+LY+ M L  + + +  +   +G++  ++  Y G+E    G    L   D V 
Sbjct: 52  LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY-GEEGTHVGSAAALDNTDLVF 110
Query: 144 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 203
              R+    + +  P    M++ +G  +   +G+   +H   KE + +   + +   IP 
Sbjct: 111 GQAREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQ 170
Query: 204 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 263
           A GAA+ +K        A+ + V + +FG+G  + G      N AA  + PI+F   NN 
Sbjct: 171 AVGAAYAAK-------RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNG 223
Query: 264 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323
           +AI            I  +GP +G+    VDG DV  V    KEA  RA     P L+E 
Sbjct: 224 YAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEA 283
Query: 324 ETYRFRGHSLADPDE--LRDPAEKARYAARD-PITALKKYLIESSLASEAELKAIEKK 378
            TYR  GH+    D    R   E   +  +D PI+ L+ YL+      E + KA  K+
Sbjct: 284 MTYRI-GHASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQ 340

>pdb|2BP7|A Chain A, New Crystal Form Of The Pseudomonas Putida Branched-Chain Dehydrogenase (E1) Length = 410

Iteration: 1
 Score = 98.2 bits (243), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 114/265 (43%), Gaps = 9/265 (3%)
Query: 112 RGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKAT 171
           R K   F     G+EA+ +G    L + D    TYR     +++ V    ++ +L     
Sbjct: 99  RQKKMSFYMQSLGEEAIGSGQALALNRTDMCFPTYRQQSILMARDVSLVEMICQLLSNER 158
Query: 172 GCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFF 231
              +G+   +    +E         +      A G A  S  + +         +  A+ 
Sbjct: 159 DPLKGRQLPIMYSVREAGFFTISGNLATQFVQAVGWAMASAIKGDT-------KIASAWI 211
Query: 232 GDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYK-KGPAFGMPG 290
           GDG      F   L  A +++ P++  V NN WAI      A  +   +  +G   G+  
Sbjct: 212 GDGATAESDFHTALTFAHVYRAPVILNVVNNQWAISTFQAIAGGESTTFAGRGVGCGIAS 271
Query: 291 FHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA-DPDELRDPAEKARYA 349
             VDG D + V   ++ A ERARRG GP+L+E  TYR   HS + DP + R   + + + 
Sbjct: 272 LRVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYRAGPHSTSDDPSKYRPADDWSHFP 331
Query: 350 ARDPITALKKYLIESSLASEAELKA 374
             DPI  LK++LI+    SE E +A
Sbjct: 332 LGDPIARLKQHLIKIGHWSEEEHQA 356

>pdb|1QS0|A Chain A, Crystal Structure Of Pseudomonas Putida 2-Oxoisovalerate Dehydrogenase (Branched-Chain Alpha-Keto Acid Dehydrogenase, E1b) Length = 407

Iteration: 1
 Score = 95.9 bits (237), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 112/265 (42%), Gaps = 9/265 (3%)
Query: 112 RGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKAT 171
           R K   F     G+EA+ +G    L + D    TYR      ++ V     + +L     
Sbjct: 98  RQKKXSFYXQSLGEEAIGSGQALALNRTDXCFPTYRQQSILXARDVSLVEXICQLLSNER 157
Query: 172 GCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFF 231
              +G+   +    +E         +      A G A  S  + +         +  A+ 
Sbjct: 158 DPLKGRQLPIXYSVREAGFFTISGNLATQFVQAVGWAXASAIKGDT-------KIASAWI 210
Query: 232 GDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYK-KGPAFGMPG 290
           GDG      F   L  A +++ P++  V NN WAI      A  +   +  +G   G+  
Sbjct: 211 GDGATAESDFHTALTFAHVYRAPVILNVVNNQWAISTFQAIAGGESTTFAGRGVGCGIAS 270
Query: 291 FHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA-DPDELRDPAEKARYA 349
             VDG D + V   ++ A ERARRG GP+L+E  TYR   HS + DP + R   + + + 
Sbjct: 271 LRVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYRAGPHSTSDDPSKYRPADDWSHFP 330
Query: 350 ARDPITALKKYLIESSLASEAELKA 374
             DPI  LK++LI+    SE E +A
Sbjct: 331 LGDPIARLKQHLIKIGHWSEEEHQA 355

>pdb|3OOY|A Chain A, Crystal Structure Of Human Transketolase (Tkt) Length = 616

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 63/142 (44%), Gaps = 27/142 (19%)
Query: 197 IGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIV 256
           +G+G+  A G A+T KY  +      C        GDG  + G  +E +  A+++KL   
Sbjct: 121 LGQGLGAACGMAYTGKYFDKASYRVYC------LLGDGELSEGSVWEAMAFASIYKL--- 171
Query: 257 FVVENNLWAIGMSHLRATSDP-------QIY-KKGPAFGMPGFHVDGMDVLKVREVAKEA 308
               +NL AI   +    SDP        IY K+  AFG     VDG  V ++ +   +A
Sbjct: 172 ----DNLVAILDINRLGQSDPAPLQHQMDIYQKRCEAFGWHAIIVDGHSVEELCKAFGQA 227
Query: 309 IERARRGEGPTLVECETYRFRG 330
             +      PT +  +T++ RG
Sbjct: 228 KHQ------PTAIIAKTFKGRG 243

>pdb|3MOS|A Chain A, The Structure Of Human Transketolase Length = 616

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 63/142 (44%), Gaps = 27/142 (19%)
Query: 197 IGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIV 256
           +G+G+  A G A+T KY  +      C        GDG  + G  +E +  A+++KL   
Sbjct: 123 LGQGLGAACGMAYTGKYFDKASYRVYC------LLGDGELSEGSVWEAMAFASIYKL--- 173
Query: 257 FVVENNLWAIGMSHLRATSDP-------QIY-KKGPAFGMPGFHVDGMDVLKVREVAKEA 308
               +NL AI   +    SDP        IY K+  AFG     VDG  V ++ +   +A
Sbjct: 174 ----DNLVAILDINRLGQSDPAPLQHQMDIYQKRCEAFGWHAIIVDGHSVEELCKAFGQA 229
Query: 309 IERARRGEGPTLVECETYRFRG 330
             +      PT +  +T++ RG
Sbjct: 230 KHQ------PTAIIAKTFKGRG 245

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	434
2ozl_A	365	PDHE1-A type I, pyruvate dehydrogenase E1 componen	1e-176
1umd_A	367	E1-alpha, 2-OXO acid dehydrogenase alpha subunit;	1e-142
1w85_A	368	Pyruvate dehydrogenase E1 component, alpha subunit	1e-111
2bfd_A	400	2-oxoisovalerate dehydrogenase alpha subunit; oxid	1e-110
1qs0_A	407	2-oxoisovalerate dehydrogenase alpha-subunit; hete	1e-107
3mos_A	616	Transketolase, TK; thiamin diphosphate TPP THDP en	4e-05
1q6z_A	528	BFD, BFDC, benzoylformate decarboxylase; lyase, ca	3e-04
3lq1_A	578	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-	5e-04
3eya_A	549	Pyruvate dehydrogenase [cytochrome]; pyruvate oxid	7e-04
2nxw_A	565	Phenyl-3-pyruvate decarboxylase; thiamine pyrophos	8e-04

>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A* Length = 365

 Score =  495 bits (1277), Expect = e-176
 Identities = 126/333 (37%), Positives = 186/333 (55%), Gaps = 13/333 (3%)

Query: 84  ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 143
           +T+++GL+ Y  M   R  E    Q+Y +  + GF HL +GQEA   G    +   D ++
Sbjct: 31  LTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLI 90

Query: 144 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 203
           + YR H    ++G+  R +++EL G+  GC +G+GGSMHM++K  N  GG   +G  +P+
Sbjct: 91  TAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVPL 148

Query: 204 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 263
             G A   KY  +       D V L  +GDG  N GQ FE  NMAALWKLP +F+ ENN 
Sbjct: 149 GAGIALACKYNGK-------DEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNR 201

Query: 264 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323
           + +G S  RA +    YK+G    +PG  VDGMD+L VRE  + A    R G+GP L+E 
Sbjct: 202 YGMGTSVERAAASTDYYKRG--DFIPGLRVDGMDILCVREATRFAAAYCRSGKGPILMEL 259

Query: 324 ETYRFRGHSLADPDEL-RDPAEKARY-AARDPITALKKYLIESSLASEAELKAIEKKIDE 381
           +TYR+ GH ++DP    R   E     +  DPI  LK  ++ S+LAS  ELK I+ ++ +
Sbjct: 260 QTYRYHGHEMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRK 319

Query: 382 VVEDAVEFADESAPPPRSQLLENVFADPKGFGI 414
            +EDA +FA     PP  +L  ++++    F +
Sbjct: 320 EIEDAAQFATADPEPPLEELGYHIYSSDPPFEV 352

>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A* Length = 367

 Score =  409 bits (1054), Expect = e-142
 Identities = 108/328 (32%), Positives = 163/328 (49%), Gaps = 10/328 (3%)

Query: 84  ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKE-DSV 142
           +  ++   LY DM+  R  ++    +   GK   F+    G EA        ++   D V
Sbjct: 33  LEGEKLRRLYRDMLAARMLDERYTILIRTGKT-SFIAPAAGHEAAQVAIAHAIRPGFDWV 91

Query: 143 VSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIP 202
              YRDH  AL+ G+P + ++ ++        +G+    H  SK  N     + I   +P
Sbjct: 92  FPYYRDHGLALALGIPLKELLGQMLATKADPNKGRQMPEHPGSKALNFFTVASPIASHVP 151

Query: 203 VATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN 262
            A GAA + K  R          V +  FGDG  + G ++  +N AA+   P VF+ ENN
Sbjct: 152 PAAGAAISMKLLRT-------GQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENN 204

Query: 263 LWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVE 322
            +AI + +   T  P I  K  AFG+PG+ VDGMDVL    V KEA+ERARRGEGP+LVE
Sbjct: 205 FYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERARRGEGPSLVE 264

Query: 323 CETYRFRGHSLAD-PDELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIDE 381
              YR+  HS AD     R   E A +  +DPI   +++L    L +E   + + ++I  
Sbjct: 265 LRVYRYGPHSSADDDSRYRPKEEVAFWRKKDPIPRFRRFLEARGLWNEEWEEDVREEIRA 324

Query: 382 VVEDAVEFADESAPPPRSQLLENVFADP 409
            +E  ++ A+E+ P P   + E+VFA+ 
Sbjct: 325 ELERGLKEAEEAGPVPPEWMFEDVFAEK 352

>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A* Length = 368

 Score =  331 bits (851), Expect = e-111
 Identities = 95/328 (28%), Positives = 152/328 (46%), Gaps = 19/328 (5%)

Query: 84  ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 143
           ++ ++  EL   M+  R  +     +  +G++ GF     GQEA        L+KED ++
Sbjct: 41  LSDEQLKELMRRMVYTRILDQRSISLNRQGRL-GFYAPTAGQEASQIASHFALEKEDFIL 99

Query: 144 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 203
             YRD    +  G+P         G         G  +    +  N+L     IG     
Sbjct: 100 PGYRDVPQIIWHGLPLYQAFLFSRG------HFHGNQI---PEGVNVLPPQIIIGAQYIQ 150

Query: 204 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 263
           A G A   K R +         V + + GDG  + G F+E +N A  +K P +FVV+NN 
Sbjct: 151 AAGVALGLKMRGK-------KAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNR 203

Query: 264 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323
           +AI     + T    + +K  A G+PG  VDGMD L V    K A ERA  GEGPTL+E 
Sbjct: 204 FAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIET 263

Query: 324 ETYRFRGHSLA--DPDELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIDE 381
             +R+  H+++  DP   R    +  +A +DP+   +K+L    L SE E   + ++  E
Sbjct: 264 LCFRYGPHTMSGDDPTRYRSKELENEWAKKDPLVRFRKFLEAKGLWSEEEENNVIEQAKE 323

Query: 382 VVEDAVEFADESAPPPRSQLLENVFADP 409
            +++A++ ADE+     + L+  +F + 
Sbjct: 324 EIKEAIKKADETPKQKVTDLISIMFEEL 351

>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ... Length = 400

 Score =  328 bits (843), Expect = e-110
 Identities = 86/328 (26%), Positives = 143/328 (43%), Gaps = 10/328 (3%)

Query: 84  ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 143
           + K++ L+LY+ M L  + + +  +   +G++  ++  Y G+E    G    L   D V 
Sbjct: 52  LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY-GEEGTHVGSAAALDNTDLVF 110

Query: 144 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 203
              R+    + +  P    M++ +G  +   +G+   +H   KE + +   + +   IP 
Sbjct: 111 GQAREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQ 170

Query: 204 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 263
           A GAA+ +K           + V + +FG+G  + G      N AA  + PI+F   NN 
Sbjct: 171 AVGAAYAAKRANA-------NRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNG 223

Query: 264 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323
           +AI            I  +GP +G+    VDG DV  V    KEA  RA     P L+E 
Sbjct: 224 YAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEA 283

Query: 324 ETYRFRGHSLA-DPDELRDPAEKARYAARD-PITALKKYLIESSLASEAELKAIEKKIDE 381
            TYR    S + D    R   E   +  +D PI+ L+ YL+      E + KA  K+   
Sbjct: 284 MTYRIGHASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRR 343

Query: 382 VVEDAVEFADESAPPPRSQLLENVFADP 409
            V +A E A+    P  + L  +V+ + 
Sbjct: 344 KVMEAFEQAERKPKPNPNLLFSDVYQEM 371

>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A Length = 407

 Score =  322 bits (827), Expect = e-107
 Identities = 83/334 (24%), Positives = 137/334 (41%), Gaps = 16/334 (4%)

Query: 84  ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 143
           I  Q   +    M+  R F+        + KM  F     G+EA+ +G    L + D   
Sbjct: 71  IDPQILRQGMRAMLKTRIFDSRMVVAQRQKKM-SFYMQSLGEEAIGSGQALALNRTDMCF 129

Query: 144 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 203
            TYR     +++ V    ++ +L        +G+   +    +E         +      
Sbjct: 130 PTYRQQSILMARDVSLVEMICQLLSNERDPLKGRQLPIMYSVREAGFFTISGNLATQFVQ 189

Query: 204 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 263
           A G A  S  + +         +  A+ GDG      F   L  A +++ P++  V NN 
Sbjct: 190 AVGWAMASAIKGD-------TKIASAWIGDGATAESDFHTALTFAHVYRAPVILNVVNNQ 242

Query: 264 WAIGMSHLRAT-SDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVE 322
           WAI      A         +G   G+    VDG D + V   ++ A ERARRG GP+L+E
Sbjct: 243 WAISTFQAIAGGESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWAAERARRGLGPSLIE 302

Query: 323 CETYRFRGHSLAD-PDELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIDE 381
             TYR   HS +D P + R   + + +   DPI  LK++LI+    SE E +A   + + 
Sbjct: 303 WVTYRAGPHSTSDDPSKYRPADDWSHFPLGDPIARLKQHLIKIGHWSEEEHQATTAEFEA 362

Query: 382 VVEDAVEFADE------SAPPPRSQLLENVFADP 409
            V  A + A++         P  + + E+V+ + 
Sbjct: 363 AVIAAQKEAEQYGTLANGHIPSAASMFEDVYKEM 396

>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A* Length = 616

 Score = 44.8 bits (107), Expect = 4e-05
 Identities = 35/132 (26%), Positives = 55/132 (41%), Gaps = 19/132 (14%)

Query: 198 GEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP--I 255
           G+G+  A G A+T KY  +        +      GDG  + G  +E +  A+++KL   +
Sbjct: 124 GQGLGAACGMAYTGKYFDKA------SYRVYCLLGDGELSEGSVWEAMAFASIYKLDNLV 177

Query: 256 VFVVENNLWAIGMS-HLRATSDPQIYKK-GPAFGMPGFHVDGMDVLKVREVAKEAIERAR 313
             +  N    +G S          IY+K   AFG     VDG  V    E   +A  +A+
Sbjct: 178 AILDINR---LGQSDPAPLQHQMDIYQKRCEAFGWHAIIVDGHSV----EELCKAFGQAK 230

Query: 314 RGEGPTLVECET 325
               PT +  +T
Sbjct: 231 --HQPTAIIAKT 240

>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X* Length = 528

 Score = 42.1 bits (100), Expect = 3e-04
 Identities = 30/161 (18%), Positives = 46/161 (28%), Gaps = 56/161 (34%)

Query: 198 GEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNM-------AAL 250
           G  +P A G              A+ +   +A  GDG           N        AA 
Sbjct: 404 GFALPAAIGVQL-----------AEPERQVIAVIGDG---------SANYSISALWTAAQ 443

Query: 251 WKLPIVFVVENNLWAIGM-------------SHLRATSDPQIYKKGPAFGMPGFHVDGMD 297
           + +P +FV+ NN    G                L              +G+     D   
Sbjct: 444 YNIPTIFVIMNNGT-YGALRWFAGVLEAENVPGLD-VPGIDFRALAKGYGVQALKADN-- 499

Query: 298 VLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDE 338
                E  K +++ A   +GP L+E  T          P +
Sbjct: 500 ----LEQLKGSLQEALSAKGPVLIEVST--------VSPVK 528

>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes} Length = 578

 Score = 41.3 bits (97), Expect = 5e-04
 Identities = 29/148 (19%), Positives = 53/148 (35%), Gaps = 38/148 (25%)

Query: 193 GFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALW- 251
           G   I   +  A GA+   +                   GD +     F+   +M  L  
Sbjct: 434 GANGIDGVVSSALGASVVFQP-------------MFLLIGDLS-----FY--HDMNGLLM 473

Query: 252 ----KLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMP----------GFHVDGMD 297
               K+ +  V+ NN      S L   ++P+ ++    FG             +  D  +
Sbjct: 474 AKKYKMNLTIVIVNNDGGGIFSFLPQANEPKYFES--LFGTSTELDFRFAAAFYDADYHE 531

Query: 298 VLKVREVAKEAIERARRGEGPTLVECET 325
              V E+ +EAI++A   +G  ++E +T
Sbjct: 532 AKSVDEL-EEAIDKASYHKGLDIIEVKT 558

>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A* Length = 549

 Score = 40.9 bits (97), Expect = 7e-04
 Identities = 35/166 (21%), Positives = 52/166 (31%), Gaps = 54/166 (32%)

Query: 192 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNM---- 247
                +   +P A GA              + +   +A  GDG           +M    
Sbjct: 403 FNHGSMANAMPQALGAQA-----------TEPERQVVAMCGDG---------GFSMLMGD 442

Query: 248 ---AALWKLPIVFVVENNLWAIGM-----------SHLRATSDPQIYKKGPAFGMPGFHV 293
                  KLP+  VV NN   +G            +      D    +   A G+ G  V
Sbjct: 443 FLSVVQMKLPVKIVVFNNSV-LGFVAMEMKAGGYLTDGTELHDTNFARIAEACGITGIRV 501

Query: 294 DGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDEL 339
           +     K  EV  EA++RA   +GP LV+              +EL
Sbjct: 502 E-----KASEV-DEALQRAFSIDGPVLVDVVV---------AKEEL 532

>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A* Length = 565

 Score = 40.7 bits (96), Expect = 8e-04
 Identities = 33/180 (18%), Positives = 48/180 (26%), Gaps = 53/180 (29%)

Query: 192 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNM---- 247
           G +A +G G+P   GA                    L   GDG            M    
Sbjct: 419 GYYAGMGFGVPAGIGAQC-----------VSGGKRILTVVGDG---------AFQMTGWE 458

Query: 248 ---AALWKLPIVFVVENNLWAIGMSHLRA---------TSDPQIYKKGPAFGMPGFHVDG 295
                   +  + ++ NN     M  LR            D +        G  G  V  
Sbjct: 459 LGNCRRLGIDPIVILFNNAS-WEM--LRTFQPESAFNDLDDWRFADMAAGMGGDGVRVR- 514

Query: 296 MDVLKVREVAKEAIERARRGEG-PTLVECETYRFRGHSLADPDELRDPAE--KARYAARD 352
                  E+ K A+++A    G   L+E              D L    +  K  +AA  
Sbjct: 515 ----TRAEL-KAALDKAFATRGRFQLIEAMI-----PRGVLSDTLARFVQGQKRLHAAPR 564

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	434
2ozl_A	365	PDHE1-A type I, pyruvate dehydrogenase E1 componen	100.0
1qs0_A	407	2-oxoisovalerate dehydrogenase alpha-subunit; hete	100.0
1w85_A	368	Pyruvate dehydrogenase E1 component, alpha subunit	100.0
2bfd_A	400	2-oxoisovalerate dehydrogenase alpha subunit; oxid	100.0
1umd_A	367	E1-alpha, 2-OXO acid dehydrogenase alpha subunit;	100.0
2yic_A	868	2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.9	100.0
2xt6_A	1113	2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET	100.0
2jgd_A	933	2-oxoglutarate dehydrogenase E1 component; flavopr	100.0
2o1s_A	621	1-deoxy-D-xylulose-5-phosphate synthase; DXS, thia	99.97
2o1x_A	629	1-deoxy-D-xylulose-5-phosphate synthase; thiamin,	99.96
3rim_A	700	Transketolase, TK; TPP, transferase; HET: TPP; 2.4	99.95
1gpu_A	680	Transketolase; transferase(ketone residues); HET:	99.95
2e6k_A	651	Transketolase; structural genomics, NPPSFA, nation	99.95
1r9j_A	673	Transketolase; domains, EACH of the alpha/beta typ	99.94
2r8o_A	669	Transketolase 1, TK 1; reaction intermediate, calc	99.94
3l84_A	632	Transketolase; TKT, structural genomics, center fo	99.94
1itz_A	675	Transketolase; calvin cycle, cofactor, thiamine py	99.94
3m49_A	690	Transketolase; alpha-beta-alpha sandwich, csgid, t	99.94
3uk1_A	711	Transketolase; structural genomics, seattle struct	99.93
3mos_A	616	Transketolase, TK; thiamin diphosphate TPP THDP en	99.93
3kom_A	663	Transketolase; rossmann fold, csgid, transferase,	99.92
2qtc_A	886	Pyruvate dehydrogenase E1 component; thiamin dipho	99.91
4feg_A	603	Pyruvate oxidase; carbanion, structure activity re	99.88
1v5e_A	590	Pyruvate oxidase; oxidoreductase, flavoprotein; HE	99.7
2pan_A	616	Glyoxylate carboligase; thiamin-diphosphate (THDP)	99.67
1q6z_A	528	BFD, BFDC, benzoylformate decarboxylase; lyase, ca	99.66
2pgn_A	589	Cyclohexane-1,2-dione hydrolase (CDH); three alpha	99.64
1ozh_A	566	ALS, acetolactate synthase, catabolic; acetohydrox	99.63
1t9b_A	677	Acetolactate synthase, mitochondrial; acetohydroxy	99.62
1ovm_A	552	Indole-3-pyruvate decarboxylase; thiamine diphosph	99.62
2iht_A	573	Carboxyethylarginine synthase; thiamin diphosphate	99.62
1ybh_A	590	Acetolactate synthase, chloroplast; acetohydroxyac	99.62
2vbi_A	566	Pyruvate decarboxylase; thiamine pyrophosphate, ly	99.61
2vk8_A	563	Pyruvate decarboxylase isozyme 1; asymmetric activ	99.61
3eya_A	549	Pyruvate dehydrogenase [cytochrome]; pyruvate oxid	99.61
2wvg_A	568	PDC, pyruvate decarboxylase; thiamine diphosphate,	99.61
2c31_A	568	Oxalyl-COA decarboxylase; oxalate, thiamin diphosp	99.61
2vbf_A	570	Branched-chain alpha-ketoacid decarboxylase; KDCA,	99.61
2uz1_A	563	Benzaldehyde lyase; thiamine diphosphate, thiamine	99.6
2nxw_A	565	Phenyl-3-pyruvate decarboxylase; thiamine pyrophos	99.59
2q28_A	564	Oxalyl-COA decarboxylase; lyase, oxalate degradati	99.58
3ahc_A	845	Phosphoketolase, xylulose 5-phosphate/fructose 6-p	99.57
3hww_A	556	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-	99.54
2x7j_A	604	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -	99.53
3lq1_A	578	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-	99.47
2c42_A	1231	Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron,	99.09
2pgn_A	589	Cyclohexane-1,2-dione hydrolase (CDH); three alpha	93.13
2uz1_A	563	Benzaldehyde lyase; thiamine diphosphate, thiamine	92.89
1ybh_A	590	Acetolactate synthase, chloroplast; acetohydroxyac	92.77
2iht_A	573	Carboxyethylarginine synthase; thiamin diphosphate	92.59
1ozh_A	566	ALS, acetolactate synthase, catabolic; acetohydrox	92.58
3eya_A	549	Pyruvate dehydrogenase [cytochrome]; pyruvate oxid	92.18
2wvg_A	568	PDC, pyruvate decarboxylase; thiamine diphosphate,	92.03
1yd7_A	395	2-keto acid:ferredoxin oxidoreductase subunit alph	91.99
1t9b_A	677	Acetolactate synthase, mitochondrial; acetohydroxy	91.48
4feg_A	603	Pyruvate oxidase; carbanion, structure activity re	91.11
2vbi_A	566	Pyruvate decarboxylase; thiamine pyrophosphate, ly	91.07
2nxw_A	565	Phenyl-3-pyruvate decarboxylase; thiamine pyrophos	91.07
1v5e_A	590	Pyruvate oxidase; oxidoreductase, flavoprotein; HE	90.12
1q6z_A	528	BFD, BFDC, benzoylformate decarboxylase; lyase, ca	89.51
2pan_A	616	Glyoxylate carboligase; thiamin-diphosphate (THDP)	89.44
2x7j_A	604	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -	89.22
2c31_A	568	Oxalyl-COA decarboxylase; oxalate, thiamin diphosp	88.05
2q28_A	564	Oxalyl-COA decarboxylase; lyase, oxalate degradati	88.05
3lq1_A	578	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-	87.52
3mos_A	616	Transketolase, TK; thiamin diphosphate TPP THDP en	87.45
2r8o_A	669	Transketolase 1, TK 1; reaction intermediate, calc	87.45
2e6k_A	651	Transketolase; structural genomics, NPPSFA, nation	86.96
3kom_A	663	Transketolase; rossmann fold, csgid, transferase,	86.1
1gpu_A	680	Transketolase; transferase(ketone residues); HET:	84.99
2vk8_A	563	Pyruvate decarboxylase isozyme 1; asymmetric activ	84.48
3l84_A	632	Transketolase; TKT, structural genomics, center fo	84.35
2vbf_A	570	Branched-chain alpha-ketoacid decarboxylase; KDCA,	82.8
1ovm_A	552	Indole-3-pyruvate decarboxylase; thiamine diphosph	82.25
1itz_A	675	Transketolase; calvin cycle, cofactor, thiamine py	82.03
3hww_A	556	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-	81.79
2o1s_A	621	1-deoxy-D-xylulose-5-phosphate synthase; DXS, thia	81.72
2o1x_A	629	1-deoxy-D-xylulose-5-phosphate synthase; thiamin,	81.52
3m49_A	690	Transketolase; alpha-beta-alpha sandwich, csgid, t	81.44
1r9j_A	673	Transketolase; domains, EACH of the alpha/beta typ	80.71

>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*

Probab=100.00  E-value=1.8e-72  Score=572.38  Aligned_cols=321  Identities=39%  Similarity=0.717  Sum_probs=303.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcCCCCEEEccCcchHHHHHcCCCHH
Q 013928           81 NLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPAR  160 (434)
Q Consensus        81 ~~~~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~~~D~v~~~yR~~~~~La~G~~~~  160 (434)
                      .+.+++++++++|+.|+++|.||+++..++++|++.||+|++.||||+++|++.+|+++|+|+++||+|++++++|+++.
T Consensus        28 ~~~l~~e~l~~~yr~M~~~R~~e~~~~~l~~~g~i~gf~~~~~GqEa~~vg~~~al~~~D~i~~~yR~~~~~~~~G~~~~  107 (365)
T 2ozl_A           28 TTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRAHGFTFTRGLSVR  107 (365)
T ss_dssp             EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCCCCCTTCHHHHHHHHHTSCTTSEEECCSCCHHHHHHTTCCHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCCChHHHHHHHHHhhCCCCEEehHHHHHHHHHhcCCCHH
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCccCCCCCcccccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccch
Q 013928          161 AVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQ  240 (434)
Q Consensus       161 ~i~~el~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~  240 (434)
                      ++|+|++|+.++.++|++|+||+++.  ++.+++|+||+++|+|+|+|+|.+++       +++++|||++|||++++|.
T Consensus       108 ~i~~e~~g~~~g~~~g~gg~~H~~~~--~~~~~~g~~G~~lp~A~G~A~A~~~~-------~~~~~vv~~~GDGa~~~G~  178 (365)
T 2ozl_A          108 EILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVPLGAGIALACKYN-------GKDEVCLTLYGDGAANQGQ  178 (365)
T ss_dssp             HHHHHHTTCTTSTTTTSSCTTCCCBT--TBCCCCCSTTTHHHHHHHHHHHHHHH-------TCCCCEEEEEETTGGGCHH
T ss_pred             HHHHHHcCCCCCCCCCCCCCCCcCcc--ccCCCcchhhhhhHHHHHHHHHHHhc-------CCCceEEEEECchhhhccH
Confidence            99999999999999999999999653  78888999999999999999999887       5788999999999999999


Q ss_pred             HHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEE
Q 013928          241 FFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTL  320 (434)
Q Consensus       241 ~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~l  320 (434)
                      ++|+||+|+.|+||+||||+||+|+++++...+...+++.+  ++||+++++|||+|+++|++++++|+++++++++|+|
T Consensus       179 ~~Ealn~A~~~~lpvi~vv~NN~~g~~t~~~~~~~~~~~~~--ra~g~p~~~VdG~D~~av~~a~~~A~~~~r~~~gP~l  256 (365)
T 2ozl_A          179 IFEAYNMAALWKLPCIFICENNRYGMGTSVERAAASTDYYK--RGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPIL  256 (365)
T ss_dssp             HHHHHHHHHHTTCCEEEEEEECSEETTEEHHHHCSCCCGGG--TTTTSCEEEEETTCHHHHHHHHHHHHHHHHTTCCCEE
T ss_pred             HHHHHHHHHHHCcCEEEEEECCCcccCCCcccccCCCCHHH--HhCCCCEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEE
Confidence            99999999999999999999999999997666656677776  6899999999999999999999999999999999999


Q ss_pred             EEEEEecCCCCCCCCCC-CCCCHHHHHHHhc-CChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhCCCCCc
Q 013928          321 VECETYRFRGHSLADPD-ELRDPAEKARYAA-RDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPPR  398 (434)
Q Consensus       321 Iev~t~R~~gHs~~D~~-~yR~~~e~~~~~~-~DPl~~~~~~L~~~G~~te~e~~~i~~e~~~~v~~a~~~A~~~p~p~~  398 (434)
                      ||++|||.+||+++|++ .||+++|++.|++ +||+.+|+++|+++|+++++++++|+++++++|++++++|+++|.|++
T Consensus       257 Ie~~t~R~~gHs~~D~~~~Yr~~~e~~~~~~~~dpi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~p~p~~  336 (365)
T 2ozl_A          257 MELQTYRYHGHEMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQFATADPEPPL  336 (365)
T ss_dssp             EEEECCCSSCSSTTCCSCSSSCHHHHHHHHHHHCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHSCCCCG
T ss_pred             EEEEeecCCCCCCCCCCcccCCHHHHHHHHhCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence            99999999999999976 6999999999985 799999999999999999999999999999999999999999999999


Q ss_pred             chhhhcccCCCCCC
Q 013928          399 SQLLENVFADPKGF  412 (434)
Q Consensus       399 ~~l~~~vya~~~~~  412 (434)
                      +++|+|||+++++.
T Consensus       337 ~~~~~~vy~~~~~~  350 (365)
T 2ozl_A          337 EELGYHIYSSDPPF  350 (365)
T ss_dssp             GGTTCSSSSSCCCE
T ss_pred             HHHHhhhcCCCChh
Confidence            99999999977653

>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A

Probab=100.00  E-value=7.4e-71  Score=567.59  Aligned_cols=323  Identities=26%  Similarity=0.372  Sum_probs=307.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcCCCCEEEccCcchHHHHHcCCCHH
Q 013928           81 NLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPAR  160 (434)
Q Consensus        81 ~~~~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~~~D~v~~~yR~~~~~La~G~~~~  160 (434)
                      .+.+++|+++++|+.|+++|.||+++.++|++|++ +|+|++.||||+++|++.+|+++|+|+++||+|++.|++|+++.
T Consensus        68 ~~~~~~e~~~~~y~~M~~~R~fe~~~~~~~~qgr~-~~~~~~~GqEA~~vg~~~al~~~D~v~~~yR~~~~~l~~g~~~~  146 (407)
T 1qs0_A           68 AEDIDPQILRQGMRAMLKTRIFDSRMVVAQRQKKM-SFYMQSLGEEAIGSGQALALNRTDMCFPTYRQQSILMARDVSLV  146 (407)
T ss_dssp             GSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-SCCCCCTTTHHHHHHHHHHSCTTSEEECCSSCHHHHHHTTCCHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc-ccCcCCCChHHHHHHHHHhcCCCCEEEecccchHHHHhcCCCHH
Confidence            36789999999999999999999999999999987 59999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCccCCCCCcccccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccch
Q 013928          161 AVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQ  240 (434)
Q Consensus       161 ~i~~el~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~  240 (434)
                      ++|++++|+.++.++|+++++|++..+.++.+.+|+||+++|+|+|+|+|.+++       +++++|||++|||++++|.
T Consensus       147 ~i~~el~g~~~~~~~G~g~~~h~~~~~~~~~~~~g~lG~~lp~AvGaA~A~k~~-------~~~~~vv~i~GDGa~~~G~  219 (407)
T 1qs0_A          147 EMICQLLSNERDPLKGRQLPIMYSVREAGFFTISGNLATQFVQAVGWAMASAIK-------GDTKIASAWIGDGATAESD  219 (407)
T ss_dssp             HHHHHHHTCTTCTTTTCSCTTCCCBGGGTBCCCCSSSSHHHHHHHHHHHHHHHT-------TCCCCEEEEEETGGGGSHH
T ss_pred             HHHHHHhCCCCCCCCCCCceeecchhccCccccccccccchhHHHHHHHHHHHh-------CCCCEEEEEECCchhhcCh
Confidence            999999999998889999999999988899999999999999999999998876       5789999999999999999


Q ss_pred             HHHHHHHHHHcCCCeEEEEEcCCccCcccccccc-cCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCE
Q 013928          241 FFECLNMAALWKLPIVFVVENNLWAIGMSHLRAT-SDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPT  319 (434)
Q Consensus       241 ~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~-~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~  319 (434)
                      ++|+||+|++|+||+||||+||+|+++++...+. ..+++++++++|||++++|||+|+++|++++++|+++++++++|+
T Consensus       220 ~~Eal~~A~~~~lpvi~Vv~NN~~gi~~~~~~~~~~~~d~a~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~  299 (407)
T 1qs0_A          220 FHTALTFAHVYRAPVILNVVNNQWAISTFQAIAGGESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWAAERARRGLGPS  299 (407)
T ss_dssp             HHHHHHHHHHHTCCEEEEEEECSEETTEEGGGGTTTTCCSTHHHHHTTCEEEEEETTCHHHHHHHHHHHHHHHHTTSCCE
T ss_pred             HHHHHHHHHHHCcCEEEEEECCCcceeeccccccCCCCCHHHHHHHcCCeEEEEcCCCHHHHHHHHHHHHHHHHhcCCCE
Confidence            9999999999999999999999999999876665 568999999999999999999999999999999999999999999


Q ss_pred             EEEEEEecCCCCCCCC-CCCCCCHHHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhh------
Q 013928          320 LVECETYRFRGHSLAD-PDELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADE------  392 (434)
Q Consensus       320 lIev~t~R~~gHs~~D-~~~yR~~~e~~~~~~~DPl~~~~~~L~~~G~~te~e~~~i~~e~~~~v~~a~~~A~~------  392 (434)
                      |||++|||.+||+++| +..||+++|++.|+++|||.+|+++|+++|+++++++++|+++++++|++++++|++      
T Consensus       300 lIe~~t~R~~Ghs~~Dd~~~Yr~~~e~~~~~~~DPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~~~~~~  379 (407)
T 1qs0_A          300 LIEWVTYRAGPHSTSDDPSKYRPADDWSHFPLGDPIARLKQHLIKIGHWSEEEHQATTAEFEAAVIAAQKEAEQYGTLAN  379 (407)
T ss_dssp             EEEEECCCCSCSSTTCCGGGTSCTTHHHHCTTCCHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHTTCCSSS
T ss_pred             EEEEEeeccCCcCCCCCccccCCHHHHHHHhcCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence            9999999999999997 567999999999999999999999999999999999999999999999999999998      


Q ss_pred             CCCCCcchhhhcccCCCCC
Q 013928          393 SAPPPRSQLLENVFADPKG  411 (434)
Q Consensus       393 ~p~p~~~~l~~~vya~~~~  411 (434)
                      +|.|+++++|+|||+++++
T Consensus       380 ~p~p~~~~~~~~vy~~~~~  398 (407)
T 1qs0_A          380 GHIPSAASMFEDVYKEMPD  398 (407)
T ss_dssp             CCCCCSSGGGSSSSSSCCH
T ss_pred             CCCCCHHHHHhhccCCCCH
Confidence            5899999999999998654

>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*

Probab=100.00  E-value=4.9e-69  Score=548.07  Aligned_cols=314  Identities=30%  Similarity=0.459  Sum_probs=294.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcCCCCEEEccCcchHHHHHcCCCHH
Q 013928           81 NLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPAR  160 (434)
Q Consensus        81 ~~~~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~~~D~v~~~yR~~~~~La~G~~~~  160 (434)
                      .+.+++++++++|+.|+++|.||+++.+++++|++ ||+|++.||||+++|++.+|+++|+++++||+|++++++|+++.
T Consensus        38 ~~~l~~e~l~~~y~~M~~~R~fe~~~~~~~~qgr~-g~~~~~~G~Ea~~vg~~~~l~~~D~v~~~~R~~~~~~~~G~~~~  116 (368)
T 1w85_A           38 MPELSDEQLKELMRRMVYTRILDQRSISLNRQGRL-GFYAPTAGQEASQIASHFALEKEDFILPGYRDVPQIIWHGLPLY  116 (368)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC-CSCCCCTTCHHHHHHHHHTCCTTCEEECCSSCHHHHHHTTCCHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCcc-ccCCCCCCHHHHHHHHHHhcCCcCEEEecchhHHHHHhcCCCHH
Confidence            35789999999999999999999999999999998 99999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCccCCCCCcccccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccch
Q 013928          161 AVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQ  240 (434)
Q Consensus       161 ~i~~el~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~  240 (434)
                      .+|.+++|+.+      |+++|   .+.++.+++|+||+++|+|+|+|+|.+++       +++++|||++|||++++|.
T Consensus       117 ~~~~el~G~~~------G~~~h---~~~~~~~~~g~lG~~lp~AvG~A~A~~~~-------~~~~~vv~i~GDGa~~~G~  180 (368)
T 1w85_A          117 QAFLFSRGHFH------GNQIP---EGVNVLPPQIIIGAQYIQAAGVALGLKMR-------GKKAVAITYTGDGGTSQGD  180 (368)
T ss_dssp             HHHHHHHTCGG------GGCCC---TTCCBCCCCCSTTHHHHHHHHHHHHHHHT-------TCSCCEEEEEETGGGGSHH
T ss_pred             HHHHHHCCCCC------CCCCC---cccccCCCccccCccccHHHHHHHHhHhh-------CCCCeEEEEEchhhhhhcH
Confidence            99999999865      35666   46788899999999999999999998876       5788999999999999999


Q ss_pred             HHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEE
Q 013928          241 FFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTL  320 (434)
Q Consensus       241 ~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~l  320 (434)
                      ++|+||+|+.|+||+||||+||+|+++++...+.+.+++.+++++|||++++|||+|+.+|++++++|++++|++++|+|
T Consensus       181 ~~Eal~~A~~~~lpvi~vv~NN~~gi~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~~r~~~gP~l  260 (368)
T 1w85_A          181 FYEGINFAGAFKAPAIFVVQNNRFAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTL  260 (368)
T ss_dssp             HHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSCSCSGGGGGGTTCCEEEEETTCHHHHHHHHHHHHHHHHTTSCCEE
T ss_pred             HHHHHHHHHHHCcCEEEEEEcCCccceeccccccCCCCHHHHHHHCCCCEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEE
Confidence            99999999999999999999999999998877777789999999999999999999999999999999999999999999


Q ss_pred             EEEEEecCCCCC-CCC-CCCCCCHHHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhCCCCCc
Q 013928          321 VECETYRFRGHS-LAD-PDELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPPR  398 (434)
Q Consensus       321 Iev~t~R~~gHs-~~D-~~~yR~~~e~~~~~~~DPl~~~~~~L~~~G~~te~e~~~i~~e~~~~v~~a~~~A~~~p~p~~  398 (434)
                      ||++|||.+||+ ++| +..||+++|++.|+++|||.+|+++|+++|+++++++++|+++++++|++++++|+++|.|++
T Consensus       261 Ie~~t~r~~gHs~~~Ddp~~yr~~~e~~~~~~~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~p~p~~  340 (368)
T 1w85_A          261 IETLCFRYGPHTMSGDDPTRYRSKELENEWAKKDPLVRFRKFLEAKGLWSEEEENNVIEQAKEEIKEAIKKADETPKQKV  340 (368)
T ss_dssp             EEEECCCSSCSCSSCC------CHHHHHHHHTTCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHTSCCCCH
T ss_pred             EEEEeeccCCCCCCCCCccccCCHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence            999999999999 987 667999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhcccCCCCC
Q 013928          399 SQLLENVFADPKG  411 (434)
Q Consensus       399 ~~l~~~vya~~~~  411 (434)
                      +++|+|||+++++
T Consensus       341 ~~~~~~vy~~~~~  353 (368)
T 1w85_A          341 TDLISIMFEELPF  353 (368)
T ss_dssp             HHHHHTSCSSCCH
T ss_pred             HHHHhhccCCCCh
Confidence            9999999997653

>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...

Probab=100.00  E-value=9.8e-68  Score=543.88  Aligned_cols=322  Identities=26%  Similarity=0.421  Sum_probs=289.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcCCCCEEEccCcchHHHHHcCCCHH
Q 013928           81 NLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPAR  160 (434)
Q Consensus        81 ~~~~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~~~D~v~~~yR~~~~~La~G~~~~  160 (434)
                      .+.+++++++++|+.|+++|.||+++.+++++|++ +|+|++.||||+++|++.+|+++|+|+++||+|++++++|+++.
T Consensus        49 ~~~~~~e~~~~~y~~M~~~r~fe~~~~~~~~~gri-~~~~~~~GqEa~~vg~~~al~~~D~v~~~yR~~~~~~~~G~~~~  127 (400)
T 2bfd_A           49 DPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRI-SFYMTNYGEEGTHVGSAAALDNTDLVFGQAREAGVLMYRDYPLE  127 (400)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-SCCCCCTTCHHHHHHHHHTSCTTSEEECCSCCHHHHHHTTCCHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ceeecCCChHHHHHHHHHhcCCCCEEEecCcCHHHHHHcCCCHH
Confidence            36799999999999999999999999999999998 48999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCccCCCCCcccccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccch
Q 013928          161 AVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQ  240 (434)
Q Consensus       161 ~i~~el~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~  240 (434)
                      ++|.+++|+.+++++|+++++|++..+.++.+.+|+||+++|+|+|+|+|.+++       +.+++|||++|||++++|.
T Consensus       128 ~~l~e~~g~~~g~~~G~~~~~H~~~~~~~~~~~~g~lG~~lp~AvG~AlA~~~~-------~~~~~vv~~~GDGa~~~G~  200 (400)
T 2bfd_A          128 LFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRA-------NANRVVICYFGEGAASEGD  200 (400)
T ss_dssp             HHHHHHHTCTTCTTTTCSCSSCCCBTTTTBCCCCSSTTTHHHHHHHHHHHHHHH-------TCCCCEEEEEETTGGGSHH
T ss_pred             HHHHHhcCCCCCCCCCCCCCcCCcccccCccccCccccccccHHHHHHHhhhhh-------CCCCeEEEEECchhhhcCh
Confidence            999999999999889999999999888888889999999999999999999887       5688999999999999999


Q ss_pred             HHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEE
Q 013928          241 FFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTL  320 (434)
Q Consensus       241 ~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~l  320 (434)
                      |||+||+|+.|+||+||||+||+|+++++...+.+.+++++++++|||++++|||+|+++|++++++|++++|.+++|+|
T Consensus       201 ~~Eal~~A~~~~lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~~P~l  280 (400)
T 2bfd_A          201 AHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFL  280 (400)
T ss_dssp             HHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSSSTTGGGTGGGTCEEEEEETTCHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred             HHHHHHHHHHHCcCEEEEEECCceeeeecccccCCCCCHHHHHHHcCCcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEE
Confidence            99999999999999999999999999998877777789999999999999999999999999999999999999999999


Q ss_pred             EEEEEecCCCCCCCCC-CCCCCHHHHHHHhcC-ChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhCCCCCc
Q 013928          321 VECETYRFRGHSLADP-DELRDPAEKARYAAR-DPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPPR  398 (434)
Q Consensus       321 Iev~t~R~~gHs~~D~-~~yR~~~e~~~~~~~-DPl~~~~~~L~~~G~~te~e~~~i~~e~~~~v~~a~~~A~~~p~p~~  398 (434)
                      ||++|||..||+++|+ ..||+++|++.|+++ |||.+|+++|++.|+++++++++|+++++++|++++++|++.|.|+.
T Consensus       281 Ie~~tyR~~gHs~~D~~~~Yr~~~e~~~~~~~~dPl~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~~~p~~  360 (400)
T 2bfd_A          281 IEAMTYRIGHASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNP  360 (400)
T ss_dssp             EEEECCCCC--CC-------------------CCHHHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHSCBCCG
T ss_pred             EEEEeeeeCCCCCCCCCccCCCHHHHHHHHhcCCHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence            9999999999999986 569999999999987 79999999999999999999999999999999999999999999999


Q ss_pred             chhhhcccCCCC
Q 013928          399 SQLLENVFADPK  410 (434)
Q Consensus       399 ~~l~~~vya~~~  410 (434)
                      +++|++||++++
T Consensus       361 ~~~~~~vy~~~~  372 (400)
T 2bfd_A          361 NLLFSDVYQEMP  372 (400)
T ss_dssp             GGGSTTSSSSCC
T ss_pred             HHHHHHhhccCC
Confidence            999999999764

>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*

Probab=100.00  E-value=2.8e-65  Score=520.62  Aligned_cols=323  Identities=33%  Similarity=0.531  Sum_probs=308.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcCCC-CEEEccCcchHHHHHcCCCH
Q 013928           81 NLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKE-DSVVSTYRDHVHALSKGVPA  159 (434)
Q Consensus        81 ~~~~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~~~-D~v~~~yR~~~~~La~G~~~  159 (434)
                      .+.+++++++++|+.|+++|.||+++..++++|++ |++|++.|||++++++..+|+++ |+++++||+|++.+.+|+++
T Consensus        30 ~~~l~~~~l~~l~~~m~~~R~~~~~~~~~~~~G~~-g~~~~~~G~ea~~~~~~~~l~~~rD~i~~s~r~~~~~~~~G~~~  108 (367)
T 1umd_A           30 PLDLEGEKLRRLYRDMLAARMLDERYTILIRTGKT-SFIAPAAGHEAAQVAIAHAIRPGFDWVFPYYRDHGLALALGIPL  108 (367)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC-SCCCCCTTCHHHHHHHHHHSCTTTSEEECCTTTHHHHHHHTCCH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCc-cCCCCCcCHHHHHHHHHHHcCCCCcEEEeCcHHHHHHHHcCCCH
Confidence            35689999999999999999999999999999998 89999999999999999999998 99999999999999999999


Q ss_pred             HHHHHHHhcCCCCCccCCCCCcccccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccc
Q 013928          160 RAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNG  239 (434)
Q Consensus       160 ~~i~~el~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G  239 (434)
                      .++|.+++++.++++.|.++++|+++++.++.+.+|++|.++|.|+|+|+|.|+.       +++++|||++|||++++|
T Consensus       109 ~~~l~~~~g~~~g~~~G~~~~~h~~~~~~~~~~~~g~lG~~l~~a~G~A~a~k~~-------~~~~~vv~i~GDGa~~~G  181 (367)
T 1umd_A          109 KELLGQMLATKADPNKGRQMPEHPGSKALNFFTVASPIASHVPPAAGAAISMKLL-------RTGQVAVCTFGDGATSEG  181 (367)
T ss_dssp             HHHHHHHHTBTTCTTTTCSCSSCCCBTTTTBCCCCSSTTTTHHHHHHHHHHHHHT-------TCCCCEEEEEETGGGGSH
T ss_pred             HHHHHHHhCCCCCCCCCCCCCCCCcccccCcCCCCchhhhhhhHHHHHHHHHHHh-------CCCCeEEEEEcccccccC
Confidence            9999999999999988888999998888888889999999999999999999876       578899999999999999


Q ss_pred             hHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCE
Q 013928          240 QFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPT  319 (434)
Q Consensus       240 ~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~  319 (434)
                      .++|+|++|+.|++|+||||+||+|+++++.....+.+++.+++++||+++++|||+|+.+|++++++|+++++.+++|+
T Consensus       182 ~~~Eal~~A~~~~lpvi~vv~NN~~gi~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~a~~~~gP~  261 (367)
T 1umd_A          182 DWYAGINFAAVQGAPAVFIAENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERARRGEGPS  261 (367)
T ss_dssp             HHHHHHHHHHHTTCSEEEEEEECSEETTEEHHHHCSSSCSGGGGGGTTSCEEEEETTCHHHHHHHHHHHHHHHHTTCCCE
T ss_pred             cHHHHHHHHHHhCcCEEEEEecCCeeeccChhhccCCCCHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHHhcCCCE
Confidence            99999999999999999999999999998876666778999999999999999999999999999999999999999999


Q ss_pred             EEEEEEecCCCCCCCCC-CCCCCHHHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhCCCCCc
Q 013928          320 LVECETYRFRGHSLADP-DELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPPR  398 (434)
Q Consensus       320 lIev~t~R~~gHs~~D~-~~yR~~~e~~~~~~~DPl~~~~~~L~~~G~~te~e~~~i~~e~~~~v~~a~~~A~~~p~p~~  398 (434)
                      |||++|||..||+++|+ ..||+++|++.|+++||+.+|+++|+++|+++++++++|+++++++|++++++|+++|.|++
T Consensus       262 lIe~~t~r~~Ghs~~D~~~~Yr~~~e~~~~~~~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~~~p~~  341 (367)
T 1umd_A          262 LVELRVYRYGPHSSADDDSRYRPKEEVAFWRKKDPIPRFRRFLEARGLWNEEWEEDVREEIRAELERGLKEAEEAGPVPP  341 (367)
T ss_dssp             EEEEECCCCSCSSTTCCGGGTSCHHHHHHHHTTCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCBCCG
T ss_pred             EEEEEeecCCCCCCCCCccccCCHHHHHHHHcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence            99999999999999985 67999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhcccCCCCC
Q 013928          399 SQLLENVFADPKG  411 (434)
Q Consensus       399 ~~l~~~vya~~~~  411 (434)
                      +++|+|||+++++
T Consensus       342 ~~~~~~vy~~~~~  354 (367)
T 1umd_A          342 EWMFEDVFAEKPW  354 (367)
T ss_dssp             GGGGTTSSSSCCH
T ss_pred             HHHHhhhcCCCCh
Confidence            9999999998654

>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*

Probab=100.00  E-value=5.8e-58  Score=507.89  Aligned_cols=322  Identities=20%  Similarity=0.218  Sum_probs=281.2

Q ss_pred             hhHHHHHHHhhcCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcC------C
Q 013928           65 VAVSEVVKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLK------K  138 (434)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~------~  138 (434)
                      ...+.|++++++...  +.+++|+++++|+.|+++|.||+++.++|++||++|+    .||||+++|++.+|+      +
T Consensus        98 ~~~~~w~~~~~e~~~--~~~s~e~~~~~y~~m~~~R~fE~~l~~~~~~~k~~g~----~G~Ea~~~g~~~~l~~~~~l~~  171 (868)
T 2yic_A           98 PEQQRWIQERVETKH--DKPTVAEQKYILSKLNAAEAFETFLQTKYVGQKRFSL----EGAETVIPMMDAVIDQCAEHGL  171 (868)
T ss_dssp             HHHHHHHHHHHSSCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCGGGCC----TTCTTHHHHHHHHHHHHHHTTC
T ss_pred             hHHhHHHHHHhccCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccC----CChHHHHHHHHHHHHHhhhCCC
Confidence            345679999999754  7899999999999999999999999999999999886    999999999997754      7


Q ss_pred             CCEEEc-cCcchHHHHH--cCCCHHHHHHHHhcCCCCC-ccC-CCCCcccccCC------------CcccCCcccccccc
Q 013928          139 EDSVVS-TYRDHVHALS--KGVPARAVMSELFGKATGC-CRG-QGGSMHMFSKE------------HNLLGGFAFIGEGI  201 (434)
Q Consensus       139 ~D~v~~-~yR~~~~~La--~G~~~~~i~~el~g~~~g~-~~G-~ggs~h~~~~~------------~~~~~~~g~lG~gl  201 (434)
                      +|++++ +||||+++|+  +|+++.++|+|++|+.+++ +.| .+.++|++...            .++.+++++||+++
T Consensus       172 ~D~v~gm~hRg~~~~Lan~~G~~~~~i~ae~~G~~~g~~~~g~gdv~~Hlg~~~~~~~~~g~~~v~l~l~~n~s~Lg~~~  251 (868)
T 2yic_A          172 DEVVIAMPHRGRLNVLANIVGKPYSQIFSEFEGNLNPSQAHGSGDVKYHLGATGTYIQMFGDNDIEVSLTANPSHLEAVD  251 (868)
T ss_dssp             SEEEEECCSTTHHHHHHHTTCCCHHHHTTTCC------------CGGGTCCEEEEEECSSSSCEEEEEECCCCSSTTTTH
T ss_pred             CCEEEeccccchHHHHHHHhCCCHHHHHHHhcCCCCCCccCCCCCccccCCccccccccCCCcceeeeecCCCccccccc
Confidence            999998 8999999999  9999999999999998876 444 33378876432            34566789999999


Q ss_pred             hhhHHHHHHHHHHHhhhhh---cCCCceEEEEeCcccc-ccchHHHHHHHHHHcCCC---eEEEEEcCCccCcccccccc
Q 013928          202 PVATGAAFTSKYRREVLKE---ADCDHVTLAFFGDGTC-NNGQFFECLNMAALWKLP---IVFVVENNLWAIGMSHLRAT  274 (434)
Q Consensus       202 p~AvGaA~A~k~~~~~~~~---~~~d~~vv~~~GDGa~-~~G~~~EaLn~A~~~~LP---vI~VV~NN~y~is~~~~~~~  274 (434)
                      |+|+|+|+|.|+++.....   ...+.+|||++|||++ ++|.|||+||+|+.|+||   +||||+||+|+++++...++
T Consensus       252 P~A~G~A~A~k~~~~~~~~~~~~~~~~~vv~~~GDGa~~~eG~v~Ealn~A~~~~lp~g~vi~iv~NN~~g~st~~~~~~  331 (868)
T 2yic_A          252 PVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIGFTTAPTDSR  331 (868)
T ss_dssp             HHHHHHHHHHHHHHTCSTTSSSCSCCEEEEEEEEHHHHHHCHHHHHHHTTTTCTTTCCSCCEEEEEECSCBTTBCHHHHC
T ss_pred             cHHHHHHHHHHhhccCCcccccccCCceEEEEECCcccccccHHHHHHHHHHhcCCCCCCeEEEEEcCCcccccCccccc
Confidence            9999999999987421100   0156799999999996 899999999999999999   99999999999999866566


Q ss_pred             cCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCCCCCCCCCHHHHHHHhc-CCh
Q 013928          275 SDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAA-RDP  353 (434)
Q Consensus       275 ~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~~D~~~yR~~~e~~~~~~-~DP  353 (434)
                      +.+++.+++++|||++++|||+|+++|++++++|++++|++++|+|||++|||++||+++|++.||.+.|++.|++ +||
T Consensus       332 s~~~~~~~a~a~G~p~~~VdG~D~~av~~a~~~A~~~ar~~~~PvlIe~~tyR~~GHs~~D~p~~~~p~~~~~~~~~~dP  411 (868)
T 2yic_A          332 SSEYCTDVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRRGHNEGDDPSMTQPYMYDVIDTKRGS  411 (868)
T ss_dssp             SSSSTTGGGGGGTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCSCSSTTCCGGGTCHHHHHHHTTCCCH
T ss_pred             cccCHHHHHHhCCCcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeecCCCcCcccccccCChHHHHHHHhCCCH
Confidence            6678899999999999999999999999999999999999999999999999999999999999999999999875 699


Q ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhh
Q 013928          354 ITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADE  392 (434)
Q Consensus       354 l~~~~~~L~~~G~~te~e~~~i~~e~~~~v~~a~~~A~~  392 (434)
                      +.+|+++|+++|+++++++++++++++++|++++++|++
T Consensus       412 i~~~~~~L~~~G~~t~ee~~~i~~e~~~~v~~a~~~a~~  450 (868)
T 2yic_A          412 RKAYTEALIGRGDISMKEAEDALRDYQGQLERVFNEVRE  450 (868)
T ss_dssp             HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999887

>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}

Probab=100.00  E-value=7.1e-57  Score=509.98  Aligned_cols=321  Identities=20%  Similarity=0.219  Sum_probs=279.6

Q ss_pred             hHHHHHHHhhcCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhc------CCC
Q 013928           66 AVSEVVKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLL------KKE  139 (434)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L------~~~  139 (434)
                      ..+.|++++++...  +.+++|+++++|+.|+++|.||+++.++|++||++|+    .||||+++|++.+|      +++
T Consensus       344 ~~~~w~~~~~e~~~--~~~s~e~~~~~y~~m~~~r~fE~~l~~~~~~~k~~g~----~GqEa~~~g~~~~l~~~~~l~~~  417 (1113)
T 2xt6_A          344 EQQRWIQERVETKH--DKPTVAEQKYILSKLNAAEAFETFLQTKYVGQKRFSL----EGAETVIPMMDAVIDQCAEHGLD  417 (1113)
T ss_dssp             HHHHHHHHHHHSCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCGGGCC----TTCTTHHHHHHHHHHHHHHTTCS
T ss_pred             HHhHHHHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccC----CChHHHHHHHHHHHHHhhhCCCC
Confidence            45679999999754  7899999999999999999999999999999999886    99999999998875      479


Q ss_pred             CEEEc-cCcchHHHHH--cCCCHHHHHHHHhcCCCCC-ccC-CCCCcccccCC------------CcccCCcccccccch
Q 013928          140 DSVVS-TYRDHVHALS--KGVPARAVMSELFGKATGC-CRG-QGGSMHMFSKE------------HNLLGGFAFIGEGIP  202 (434)
Q Consensus       140 D~v~~-~yR~~~~~La--~G~~~~~i~~el~g~~~g~-~~G-~ggs~h~~~~~------------~~~~~~~g~lG~glp  202 (434)
                      |++++ +||||+++|+  +|+++.++|+|++|+.+++ +.| .+.++|++...            .++.+++|+||+++|
T Consensus       418 D~v~gm~hRg~~~~La~~~G~~~~~i~ae~~G~~~g~~~~g~gdv~~Hlg~~~~~~~~~g~~~v~l~l~~n~s~Lg~~~p  497 (1113)
T 2xt6_A          418 EVVIAMPHRGRLNVLANIVGKPYSQIFSEFEGNLNPSQAHGSGDVKYHLGATGTYIQMFGDNDIEVSLTANPSHLEAVDP  497 (1113)
T ss_dssp             EEEEECCSTTHHHHHHHTTCCCHHHHSTTC-------------CGGGTCCEEEEEECSSSSCEEEEEECCCCSSTTTTHH
T ss_pred             CEEEeccccchHHHHHHHhCCCHHHHHHHhcCCCCCCccCCCCCccccCCccccccccCCCcceeeeecCCCcccccccc
Confidence            99998 8999999999  9999999999999998876 444 33378886432            345677899999999


Q ss_pred             hhHHHHHHHHHHHhhhhh---cCCCceEEEEeCcccc-ccchHHHHHHHHHHcCCC---eEEEEEcCCccCccccccccc
Q 013928          203 VATGAAFTSKYRREVLKE---ADCDHVTLAFFGDGTC-NNGQFFECLNMAALWKLP---IVFVVENNLWAIGMSHLRATS  275 (434)
Q Consensus       203 ~AvGaA~A~k~~~~~~~~---~~~d~~vv~~~GDGa~-~~G~~~EaLn~A~~~~LP---vI~VV~NN~y~is~~~~~~~~  275 (434)
                      +|+|+|+|.|+++...+.   ...+.+|||++|||++ ++|.|||+||+|+.|+||   +||||+||+|+++++...+++
T Consensus       498 ~A~G~A~A~k~~~~~~~~~~~~~~~~~~v~~~GDGa~~~eG~~~Ealn~A~~~~lp~g~vi~iv~NN~~gist~~~~~~s  577 (1113)
T 2xt6_A          498 VLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIGFTTAPTDSRS  577 (1113)
T ss_dssp             HHHHHHHHHHHHTTBSTTSSBSCCCEEEEEEEEHHHHHHCTHHHHHHTTTTCTTTCCSCCEEEEEECSCBTTBCHHHHCS
T ss_pred             HHHHHHHHHHHhccccCccccccCCcEEEEEECCcccccccHHHHHHHHHhhcCCCCCCeEEEEEeCCcccccCcccccc
Confidence            999999999987421110   0156899999999996 899999999999999999   999999999999998665555


Q ss_pred             CchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCCCCCCCCCHHHHHHHhc-CChH
Q 013928          276 DPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAA-RDPI  354 (434)
Q Consensus       276 ~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~~D~~~yR~~~e~~~~~~-~DPl  354 (434)
                      .+++.+++++|||++++|||+|+++|++++++|++++|.+++|+|||++|||++||+++|++.||.+.|++.|++ +||+
T Consensus       578 ~~~~~~~a~a~G~p~~~VdG~D~~av~~a~~~A~~~~r~~~~PvlIe~~tyR~~GHs~~D~p~~~~~~~~~~~~~~~dpi  657 (1113)
T 2xt6_A          578 SEYCTDVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRRGHNEGDDPSMTQPYMYDVIDTKRGSR  657 (1113)
T ss_dssp             SSSTTGGGGGGTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCSCSSTTCCGGGTCHHHHHHHTTCCCHH
T ss_pred             ccCHHHHHHhcCCcEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeEccCCcCCCCccccCChHHHHHHHhcCCHH
Confidence            667889999999999999999999999999999999999999999999999999999999999999999998875 6999


Q ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhh
Q 013928          355 TALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADE  392 (434)
Q Consensus       355 ~~~~~~L~~~G~~te~e~~~i~~e~~~~v~~a~~~A~~  392 (434)
                      .+|+++|+++|+++++++++|+++++++|++++++|++
T Consensus       658 ~~~~~~L~~~G~~t~ee~~~i~~e~~~~v~~a~~~a~~  695 (1113)
T 2xt6_A          658 KAYTEALIGRGDISMKEAEDALRDYQGQLERVFNEVRE  695 (1113)
T ss_dssp             HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999987

>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*

Probab=100.00  E-value=3.7e-56  Score=496.05  Aligned_cols=320  Identities=17%  Similarity=0.200  Sum_probs=262.2

Q ss_pred             hhHHHHHHHhhcCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcC------C
Q 013928           65 VAVSEVVKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLK------K  138 (434)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~------~  138 (434)
                      ...+.||+++++..  .+.+++|+++++|+.|+++|.||+++.++|++||++|    ..|||++++|+..+++      .
T Consensus       178 ~~~~~w~~~~~e~~--~~~~s~e~~~~~y~~m~~~r~fE~~l~~~~~~gkrf~----~~G~Ea~i~g~~~~~~~a~~~g~  251 (933)
T 2jgd_A          178 TEEKRWIQQRIESG--RATFNSEEKKRFLSELTAAEGLERYLGAKFPGAKRFS----LEGGDALIPMLKEMIRHAGNSGT  251 (933)
T ss_dssp             HHHHHHHHHHHCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCC----CTTCTTHHHHHHHHHHHHHTTTC
T ss_pred             HHHhHHHHHHhhcc--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc----CCCchHHHHHHHHHHHHHhhCCC
Confidence            34566999999865  5679999999999999999999999999999999877    4899999999888876      5


Q ss_pred             CCEEEc-cCcchHHHHH--cCCCHHHHHHHHhcCCCCCccCCCCCcccccCCC----------cccCCcccccccchhhH
Q 013928          139 EDSVVS-TYRDHVHALS--KGVPARAVMSELFGKATGCCRGQGGSMHMFSKEH----------NLLGGFAFIGEGIPVAT  205 (434)
Q Consensus       139 ~D~v~~-~yR~~~~~La--~G~~~~~i~~el~g~~~g~~~G~ggs~h~~~~~~----------~~~~~~g~lG~glp~Av  205 (434)
                      +|+|++ +||||+++|+  +|+++.++|+|++|+.++.+.+.+.++|++....          ++..+.+++|+++|+|+
T Consensus       252 ~D~v~g~~hRg~~~~Lan~~G~~~~~i~~e~~G~~~g~~g~gdv~~Hlg~~~~~~~~gg~~~l~l~~~~shlg~~~p~A~  331 (933)
T 2jgd_A          252 REVVLGMAHRGRLNVLVNVLGKKPQDLFDEFAGKHKEHLGTGDVKYHMGFSSDFQTDGGLVHLALAFNPSHLEIVSPVVI  331 (933)
T ss_dssp             CEEEEECCSTTHHHHHHHTTCCCHHHHHHHHHTCC--CCSCCCCGGGCCEEEEEEETTEEEEEEECCCCSSTTCHHHHHH
T ss_pred             CCEEecCCCcCHHHHHHHHhCCCHHHHHHHhcCCCCCCCCCCCccccCCcccccccCCCceEEeecccCcccccccCHHH
Confidence            999996 8999999999  9999999999999998887655556889875432          23467899999999999


Q ss_pred             HHHHHHHHHHhhhhhcCCCceEEEEeCcccc-ccchHHHHHHHHHHcCCC---eEEEEEcCCccCcc-cccccccCchhh
Q 013928          206 GAAFTSKYRREVLKEADCDHVTLAFFGDGTC-NNGQFFECLNMAALWKLP---IVFVVENNLWAIGM-SHLRATSDPQIY  280 (434)
Q Consensus       206 GaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~-~~G~~~EaLn~A~~~~LP---vI~VV~NN~y~is~-~~~~~~~~~d~~  280 (434)
                      |+|+|.++++...  .+.+.+|||++|||++ ++|.+||+||+|+.|++|   +||||+||+|+|++ +...+...++++
T Consensus       332 G~A~A~~~~~~~~--~~~~~~vv~v~GDGa~a~qG~~~Ealn~A~~~~lp~gg~I~vv~nN~~~ist~~~~~~~~~~~~~  409 (933)
T 2jgd_A          332 GSVRARLDRLDEP--SSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQVGFTTSNPLDARSTPYCT  409 (933)
T ss_dssp             HHHHHHHTTSSSC--CGGGEEEEEEEEHHHHHHCTHHHHHHHHTTSTTTCCSCCEEEEEECC---------------CGG
T ss_pred             HHHHHHHhhcccc--CCCCeEEEEEECCcccccCCHHHHHHHHhhccCCCCCceEEEEEeCCccccCCCHHhcccchhHH
Confidence            9999988763100  1246789999999998 899999999999999999   99999999999999 877777778899


Q ss_pred             hccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCCCCCCCCCHHHHHHHhc-CChHHHHHH
Q 013928          281 KKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAA-RDPITALKK  359 (434)
Q Consensus       281 ~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~~D~~~yR~~~e~~~~~~-~DPl~~~~~  359 (434)
                      +++++|||++++|||+|+++|++++++|+++++.+++|+|||+.|||++||+++|++.||+++|++.|++ +||+.+|++
T Consensus       410 ~~a~a~g~p~~~VdG~D~~av~~a~~~A~e~~r~~~~P~lIe~~tyR~~GH~~~D~~~yr~~~e~~~~~~~~dPi~~~~~  489 (933)
T 2jgd_A          410 DIGKMVQAPIFHVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYRRHGHNEADEPSATQPLMYQKIKKHPTPRKIYAD  489 (933)
T ss_dssp             GGGGTTTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC-----------CCTTHHHHHTSCCHHHHHHH
T ss_pred             HHHHHcCCCEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEeeeeecCcCcccchhhCCHHHHHHHHccCCHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998 499999999


Q ss_pred             HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhh
Q 013928          360 YLIESSLASEAELKAIEKKIDEVVEDAVEFADE  392 (434)
Q Consensus       360 ~L~~~G~~te~e~~~i~~e~~~~v~~a~~~A~~  392 (434)
                      +|+++|++|++++++++++++++|+++++.|++
T Consensus       490 ~Li~~Gv~t~~~~~~i~~~~~~~v~~a~~~A~~  522 (933)
T 2jgd_A          490 KLEQEKVATLEDATEMVNLYRDALDAGDCVVAE  522 (933)
T ss_dssp             HHHTTTSSCHHHHHHHHHHHHHHHHHTSCCCTT
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999887

>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}

Probab=99.97  E-value=8.1e-31  Score=283.33  Aligned_cols=234  Identities=18%  Similarity=0.192  Sum_probs=176.4

Q ss_pred             HHHhhcCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcC-CCCEEE--ccCc
Q 013928           71 VKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLK-KEDSVV--STYR  147 (434)
Q Consensus        71 ~~~~~~~~~~~~~~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~-~~D~v~--~~yR  147 (434)
                      |+++|+.+.....++.++|.++++.|   |.+..   ++.  ++..|+++++.|+|++.+++...++ +.|+++  ..||
T Consensus        10 ~l~~i~~p~d~~~l~~~~l~~l~~~i---R~~~~---~~~--~~~~Gh~~~~lg~~~~~~~l~~~~~~~~D~~v~~~gH~   81 (621)
T 2o1s_A           10 TLALVDSTQELRLLPKESLPKLCDEL---RRYLL---DSV--SRSSGHFASGLGTVELTVALHYVYNTPFDQLIWDVGHQ   81 (621)
T ss_dssp             TGGGCSSHHHHTTSCGGGHHHHHHHH---HHHHH---HHS--CGGGCTHHHHHTTHHHHHHHHHHSCTTTSEEEESSSTT
T ss_pred             hhhhcCChHHhhhCCHHHHHHHHHHH---HHHHH---HHH--hhcCCCcCCChhHHHHHHHHHhccCCCCCEEEEeCchH
Confidence            46888887777789999999999987   65543   322  2457999999999999999999999 899998  6899


Q ss_pred             chHHHHHcCCCHHHHHHHHhcCCCCCccCCCCCcccccC---CCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCC
Q 013928          148 DHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSK---EHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD  224 (434)
Q Consensus       148 ~~~~~La~G~~~~~i~~el~g~~~g~~~G~ggs~h~~~~---~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d  224 (434)
                      ++++.+..|. .+++ ..+        +..+|.+++..+   +.. ...+|+||+++|+|+|+|+|.+++       +++
T Consensus        82 ~y~~~~l~G~-~~~~-~~~--------r~~~g~~g~~~~~~s~~~-~~~~G~~G~gl~~A~G~AlA~~~~-------~~~  143 (621)
T 2o1s_A           82 AYPHKILTGR-RDKI-GTI--------RQKGGLHPFPWRGESEYD-VLSVGHSSTSISAGIGIAVAAEKE-------GKN  143 (621)
T ss_dssp             CHHHHHTTTT-GGGG-GGT--------TSTTSCCSSCCTTTCTTC-CSCCSSSSCHHHHHHHHHHHHHHH-------TSC
T ss_pred             HHHHHHHhCC-Hhhh-hcc--------cccCCCCCCCCCCCCCCC-ccCCcccchHHHHHHHHHHHHHHh-------CCC
Confidence            9999999887 2221 111        111221122111   223 334899999999999999999887       578


Q ss_pred             ceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccC----------------------------
Q 013928          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSD----------------------------  276 (434)
Q Consensus       225 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~----------------------------  276 (434)
                      ++|||++|||++++|+++|+|++|+.+++|+|+||+||+|+++.+...+...                            
T Consensus       144 ~~Vv~v~GDG~~~~G~~~EaL~~A~~~~~pli~vvnnN~~~i~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~p~~~  223 (621)
T 2o1s_A          144 RRTVCVIGDGAITAGMAFEAMNHAGDIRPDMLVILNDNEMSISENVGALNNHLAQLLSGKLYSSLREGGKKVFSGVPPIK  223 (621)
T ss_dssp             CCEEEEEETTGGGSHHHHHHHHHHHHHCCSEEEEEEECC-----------------------------------------
T ss_pred             CeEEEEEchhhhhccHHHHHHHHHHhhCCCEEEEEeCCCcccCCCcchHHHHHHhhhcchhHHHHHHHHHHHHhccchHH
Confidence            9999999999999999999999999999999999999999998765432100                            


Q ss_pred             ------chh-------hhccccCCCcEE-EEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCC
Q 013928          277 ------PQI-------YKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA  334 (434)
Q Consensus       277 ------~d~-------~~~a~a~Gi~~~-~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~~  334 (434)
                            .++       ..++++|||+++ +|||+|+.++.+++++|.    +.++|+|||++|+|++||+..
T Consensus       224 ~~~~r~~~~~~~~~~p~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~----~~~gP~lI~v~t~kg~G~~~~  291 (621)
T 2o1s_A          224 ELLKRTEEHIKGMVVPGTLFEELGFNYIGPVDGHDVLGLITTLKNMR----DLKGPQFLHIMTKKGRGYEPA  291 (621)
T ss_dssp             ---------------CHHHHHHTTCEEEEEEETTCHHHHHHHHHHHH----HSCSEEEEEEECCCTTCCCCC
T ss_pred             HHHHHHHHHhhhccChhhHHHHCCCeEeeeeCCCCHHHHHHHHHHHH----HcCCCEEEEEEEecccCCChh
Confidence                  011       467899999999 999999999998777654    458999999999999999865

>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}

Probab=99.96  E-value=3.8e-30  Score=278.46  Aligned_cols=234  Identities=17%  Similarity=0.142  Sum_probs=182.3

Q ss_pred             HHHhhcCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcC-CCCEEEccCcch
Q 013928           71 VKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLK-KEDSVVSTYRDH  149 (434)
Q Consensus        71 ~~~~~~~~~~~~~~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~-~~D~v~~~yR~~  149 (434)
                      ++++|+.+.....++.+++.++|+.|   |.+.   .+++.  +..|+++++.|+-.+..++...++ +.|+++.+ |||
T Consensus        12 ~l~~i~~p~d~~~l~~~~l~~l~~~i---R~~~---~~~~~--~~~Gh~~~~lg~v~l~~aL~~~~~~~~D~~v~~-~GH   82 (629)
T 2o1x_A           12 LLDQIHGPKDLKRLSREQLPALTEEL---RGEI---VRVCS--RGGLHLASSLGAVDIITALHYVLDSPRDRILFD-VGH   82 (629)
T ss_dssp             TGGGCSSHHHHTTSCGGGHHHHHHHH---HHHH---HHHHT--TSSSCHHHHHHTHHHHHHHHHHSCTTTSEEEES-SST
T ss_pred             hhhhCCChhhhhhCCHHHHHHHHHHH---HHHH---HHHHH--hcCCcCCCchhHHHHHHHHHhhcCCCCCeEEec-Cch
Confidence            46788877777789999999999998   5443   23333  257899999999777777766778 89999998 999


Q ss_pred             H---HHHHcCC-CHHHHHHHHhcCCCCCccCCCCCcccccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCc
Q 013928          150 V---HALSKGV-PARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH  225 (434)
Q Consensus       150 ~---~~La~G~-~~~~i~~el~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~  225 (434)
                      +   +.+..|. +....++++.|. +|++.+. +++       +...++|+||+++|+|+|+|+|.+++       ++++
T Consensus        83 ~~y~~~~l~G~~~~~~~~r~~~g~-~G~p~~~-~s~-------~~~~~~G~~G~gl~~AvG~AlA~k~~-------~~~~  146 (629)
T 2o1x_A           83 QAYAHKILTGRRDQMADIKKEGGI-SGFTKVS-ESE-------HDAITVGHASTSLTNALGMALARDAQ-------GKDF  146 (629)
T ss_dssp             TCHHHHHTTTTGGGGGGTTSTTSC-CSSCCGG-GCT-------TCCSCCSSSSCHHHHHHHHHHHHHHH-------TCCC
T ss_pred             HHHHHHHHhCcHhHHhCcccCCCC-CCCCCCC-CCC-------CCCcCCCcccccHhHHHHHHHHHHHh-------CCCC
Confidence            5   5666776 444446666553 3444322 122       23556899999999999999999887       6789


Q ss_pred             eEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCccccccccc--------------------------C---
Q 013928          226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATS--------------------------D---  276 (434)
Q Consensus       226 ~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~--------------------------~---  276 (434)
                      +|||++|||++++|+++|+|++|+.|++|+|+||+||+|+++.+...+..                          .   
T Consensus       147 ~Vv~v~GDG~~~~G~~~EaL~~A~~~~~pli~IvnnN~~~i~~~~~~~~~~~~~l~~~~~y~~~~~~~~~~~~~~g~~~~  226 (629)
T 2o1x_A          147 HVAAVIGDGSLTGGMALAALNTIGDMGRKMLIVLNDNEMSISENVGAMNKFMRGLQVQKWFQEGEGAGKKAVEAVSKPLA  226 (629)
T ss_dssp             CEEEEEETTGGGSHHHHHHHHHHHHHCCSEEEEEEECSBSSSBCCSSHHHHC----------------------------
T ss_pred             eEEEEEchhhhhccHHHHHHHHHHhhCCCEEEEEECCCCCCCCChhHHHHHHHHHhhchhHHHHHHHHHHHHhccchHHH
Confidence            99999999999999999999999999999999999999999876542100                          0   


Q ss_pred             ------chh-------h--hccccCCCcEE-EEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCC
Q 013928          277 ------PQI-------Y--KKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSL  333 (434)
Q Consensus       277 ------~d~-------~--~~a~a~Gi~~~-~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~  333 (434)
                            +++       .  +++++|||+++ +|||+|+.++.+++++|    ++.++|+||+++|++++||+.
T Consensus       227 ~~~~~~~d~~~~~~~p~~~~~~ea~G~~~~g~vdG~d~~~l~~al~~A----~~~~~P~lI~v~t~kg~G~~~  295 (629)
T 2o1x_A          227 DFMSRAKNSTRHFFDPASVNPFAAMGVRYVGPVDGHNVQELVWLLERL----VDLDGPTILHIVTTKGKGLSY  295 (629)
T ss_dssp             -----------------CCCTTGGGTCEEEEEEESSCHHHHHHHHHHH----TTSSSEEEEEEECCTTTTCHH
T ss_pred             HHHHHHHHHHHhhcCcccchHHHhcCCeEEeeECCcCHHHHHHHHHHH----HhcCCCEEEEEEEecCCCCCh
Confidence                  132       3  78999999999 99999999988866655    456899999999999999974

>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}

Probab=99.95  E-value=7.8e-27  Score=254.08  Aligned_cols=145  Identities=20%  Similarity=0.212  Sum_probs=127.7

Q ss_pred             CcccCCcccccccchhhHHHHHHHHHHHhhhhhc------CCCceEEEEeCccccccchHHHHHHHHHHcCCC-eEEEEE
Q 013928          188 HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEA------DCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVE  260 (434)
Q Consensus       188 ~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~------~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vI~VV~  260 (434)
                      .++...+|+||+++|.|+|+|+|.|+++.+++.+      ..+++|||++|||++++|++||++++|+.|+|| +|+||+
T Consensus       126 pgv~~~tG~lG~gl~~AvG~AlA~k~~~~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~nli~i~d  205 (700)
T 3rim_A          126 PGVEITTGPLGQGLASAVGMAMASRYERGLFDPDAEPGASPFDHYIYVIASDGDIEEGVTSEASSLAAVQQLGNLIVFYD  205 (700)
T ss_dssp             TTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCTTSCTTCSTTCCCEEEEEEHHHHHSHHHHHHHHHHHHTTCTTEEEEEE
T ss_pred             CCccccccccCCcchHHHHHHHHHHHHhhhccccccccccCCCCeEEEEECCcccccChHHHHHHHHHHcCCCcEEEEEE
Confidence            3677788999999999999999999986555442      357899999999999999999999999999998 999999


Q ss_pred             cCCccCcccccccccCchhhhccccCCCcEEEE-eCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCCCC
Q 013928          261 NNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADP  336 (434)
Q Consensus       261 NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~V-dG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~~D~  336 (434)
                      ||+|+|+++.... ...++.+++++|||++++| ||+|+.++++++++|.+   ..++|+||+++|+|++||+..+.
T Consensus       206 ~N~~si~~~~~~~-~~~~~~~~~~a~G~~~~~V~DG~D~~al~~Al~~A~~---~~~~P~lI~~~T~kG~G~~~~e~  278 (700)
T 3rim_A          206 RNQISIEDDTNIA-LCEDTAARYRAYGWHVQEVEGGENVVGIEEAIANAQA---VTDRPSFIALRTVIGYPAPNLMD  278 (700)
T ss_dssp             ECSEETTEEGGGT-CCCCHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHH---CCSSCEEEEEECCTTTTCTTTTT
T ss_pred             CCCcccccchhhc-cchhHHHHHHHcCCeEEEECCCCCHHHHHHHHHHHHH---cCCCCEEEEEEEEeeecCCccCC
Confidence            9999999887754 3678999999999999999 99999999997776643   36899999999999999997654

>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*

Probab=99.95  E-value=2.9e-27  Score=257.82  Aligned_cols=227  Identities=17%  Similarity=0.138  Sum_probs=168.4

Q ss_pred             ccccCCCChHHHHHHHHH--hcCC-------CCEEEc--cCcc---hHHHHHcCC--CHHHHHHHHhcCCCCCccCCCCC
Q 013928          117 GFVHLYNGQEAVSTGFIK--LLKK-------EDSVVS--TYRD---HVHALSKGV--PARAVMSELFGKATGCCRGQGGS  180 (434)
Q Consensus       117 G~~h~~~GqEa~~~g~~~--~L~~-------~D~v~~--~yR~---~~~~La~G~--~~~~i~~el~g~~~g~~~G~ggs  180 (434)
                      |+..++.|.--+.+++-.  .+++       .|.++.  .|-+   +++....|.  +.+++ ..+... .+.+     +
T Consensus        29 GH~g~~l~~~~i~~~L~~~~~~~~~~p~~~~rDr~v~s~GH~~~~lYa~~~l~G~~~~~~~l-~~~r~~-g~~~-----~  101 (680)
T 1gpu_A           29 GHPGAPLGMAPAAHVLWSQMRMNPTNPDWINRDRFVLSNGHAVALLYSMLHLTGYDLSIEDL-KQFRQL-GSRT-----P  101 (680)
T ss_dssp             SCCHHHHHHHHHHHHHHHTCCCCTTCTTCTTCCEEEESSGGGHHHHHHHHHHTTCSCCHHHH-TTTTCT-TCSC-----C
T ss_pred             CccCCchhHHHHHHHHHHhCCCCccCCCCCCCCEEEEecchHHHHHHHHHHHhCCCCCHHHH-Hhhccc-CCCC-----C
Confidence            454445666555555543  3333       465544  3444   334444565  45544 222211 1110     1


Q ss_pred             cccccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcC---CCceEEEEeCccccccchHHHHHHHHHHcCCC-eE
Q 013928          181 MHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEAD---CDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IV  256 (434)
Q Consensus       181 ~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~---~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vI  256 (434)
                      .|......++...+|+||+++|+|+|+|+|.++++..++.++   .+++|||++|||++++|++||+|++|+.++|| +|
T Consensus       102 ghp~~~~~g~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~vv~i~GDG~~~eG~~~Eal~~A~~~~L~~li  181 (680)
T 1gpu_A          102 GHPEFELPGVEVTTGPLGQGISNAVGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLI  181 (680)
T ss_dssp             SSCCTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEE
T ss_pred             CCCCccCCCeeeccccccchHHHHHHHHHHHHHhccccccCccCCCCCeEEEEECCCccchhhHHHHHHHHHHhCCCcEE
Confidence            233223457788899999999999999999998765443322   37899999999999999999999999999999 99


Q ss_pred             EEEEcCCccCcccccccccCchhhhccccCCCcEE-EEeCC-CHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCC
Q 013928          257 FVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGF-HVDGM-DVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA  334 (434)
Q Consensus       257 ~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~-~VdG~-D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~~  334 (434)
                      +||+||+|+++.+...+. .+++.+++++|||+++ +|||+ |+.++++++++|.+   ..++|+||+++|+|++||+..
T Consensus       182 ~i~~nN~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~al~~A~~---~~~~P~lI~~~T~kg~G~~~~  257 (680)
T 1gpu_A          182 AIYDDNKITIDGATSISF-DEDVAKRYEAYGWEVLYVENGNEDLAGIAKAIAQAKL---SKDKPTLIKMTTTIGYGSLHA  257 (680)
T ss_dssp             EEEEECSEETTEEGGGTC-CCCHHHHHHHHTCEEEEESCTTTCHHHHHHHHHHHHH---CTTSCEEEEEECCTTTTSTTT
T ss_pred             EEEECCCceEeccccccc-CccHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHH---CCCCCEEEEEEeecccccccC
Confidence            999999999998776543 5789999999999999 99999 99999998877654   367999999999999999977


Q ss_pred             CC----CCCCCHHHHHHHhcCChH
Q 013928          335 DP----DELRDPAEKARYAARDPI  354 (434)
Q Consensus       335 D~----~~yR~~~e~~~~~~~DPl  354 (434)
                      |+    ..||+++|+++|++++++
T Consensus       258 ~~~~~H~~~~~~ee~~~~~~~~~~  281 (680)
T 1gpu_A          258 GSHSVHGAPLKADDVKQLKSKFGF  281 (680)
T ss_dssp             TSGGGSSSCCCHHHHHHHHHHTTC
T ss_pred             CCCccCCCCCCHHHHHHHHHHcCC
Confidence            75    579999999998765543

>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}

Probab=99.95  E-value=3.7e-28  Score=263.72  Aligned_cols=163  Identities=20%  Similarity=0.205  Sum_probs=140.9

Q ss_pred             CcccCCcccccccchhhHHHHHHHHHHHhhhhhcC---CCceEEEEeCccccccchHHHHHHHHHHcCCC-eEEEEEcCC
Q 013928          188 HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEAD---CDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNL  263 (434)
Q Consensus       188 ~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~---~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vI~VV~NN~  263 (434)
                      .++...+|+||+++|+|+|+|+|.++++.+++..+   ++++|||++|||++++|+++|+|++|+.++|| +|+||+||+
T Consensus       111 ~g~~~~~G~lG~gl~~AvG~A~A~~~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~  190 (651)
T 2e6k_A          111 PGVEVTTGPLGQGISTAVGLALAERKLAAEFNRPGHVVVDHYTYVLASDGDLMEGVSGEAASLAGHWGLSKLIVFWDDNR  190 (651)
T ss_dssp             TTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECC
T ss_pred             CCeeeccccccchHHHHHHHHHHHHhhcccccccccCCCCCEEEEEEChhhhchhHHHHHHHHHHHcCCCeEEEEEECCC
Confidence            36777899999999999999999998865544322   57899999999999999999999999999999 999999999


Q ss_pred             ccCcccccccccCchhhhccccCCCcEE-EEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCCCCCCC---
Q 013928          264 WAIGMSHLRATSDPQIYKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDEL---  339 (434)
Q Consensus       264 y~is~~~~~~~~~~d~~~~a~a~Gi~~~-~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~~D~~~y---  339 (434)
                      |+++.+..... .+++.+++++|||+++ +|||+|+.++++++++|.+    .++|+||+++|+|++||+..|+..|   
T Consensus       191 ~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~----~~~P~lI~~~t~kg~G~~~~~~~~~H~~  265 (651)
T 2e6k_A          191 ISIDGPTDLAF-TEDVLARYRAYGWQTLRVEDVNDLEALRKAIKLAKL----DERPTLIAVRSHIGFGSPKQDSAKAHGE  265 (651)
T ss_dssp             EETTEEGGGTC-CSCHHHHHHHTTCEEEEESCTTCHHHHHHHHHHHHH----SSSCEEEEEECCTTTTSTTTTSGGGTSS
T ss_pred             ccccccccccc-CccHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHH----CCCCEEEEEEeEeccccccccccccccc
Confidence            99998876654 6789999999999999 9999999999998877653    6799999999999999996666555   


Q ss_pred             -CCHHHHHHHhcCChHH
Q 013928          340 -RDPAEKARYAARDPIT  355 (434)
Q Consensus       340 -R~~~e~~~~~~~DPl~  355 (434)
                       ++++|+++|++++|+.
T Consensus       266 ~~~~~e~~~~~~~~~~~  282 (651)
T 2e6k_A          266 PLGPEAVEATRRNLGWP  282 (651)
T ss_dssp             CCHHHHHHHHHHHHTCC
T ss_pred             CCCHHHHHHHHHHcCCC
Confidence             5678888888776653

>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1

Probab=99.94  E-value=4.2e-26  Score=248.36  Aligned_cols=159  Identities=22%  Similarity=0.222  Sum_probs=137.5

Q ss_pred             cccCCcccccccchhhHHHHHHHHHHHhhhhhcC---CCceEEEEeCccccccchHHHHHHHHHHcCCC-eEEEEEcCCc
Q 013928          189 NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEAD---CDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLW  264 (434)
Q Consensus       189 ~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~---~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vI~VV~NN~y  264 (434)
                      ++...+|+||+++|.|+|+|+|.++++.+++.++   .+++|||++|||++++|++||+|++|+.++|| +|+||+||+|
T Consensus       110 gv~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~g~~~~d~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~d~N~~  189 (673)
T 1r9j_A          110 GVEVTTGPLGQGIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLMEGVCQEALSLAGHLALEKLIVIYDSNYI  189 (673)
T ss_dssp             TCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHHTCTTEEEEEEECSB
T ss_pred             CeeeccCCCCCcHHHHHHHHHHHHHhhhhccccccCCCCCEEEEEECcchhcccHHHHHHHHHHHhCCCcEEEEEECCCC
Confidence            6677899999999999999999998876554433   58899999999999999999999999999999 9999999999


Q ss_pred             cCcccccccccCchhhhccccCCCcEE-EEeC-CCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCCCC----CC
Q 013928          265 AIGMSHLRATSDPQIYKKGPAFGMPGF-HVDG-MDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADP----DE  338 (434)
Q Consensus       265 ~is~~~~~~~~~~d~~~~a~a~Gi~~~-~VdG-~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~~D~----~~  338 (434)
                      +++.+...+. ..++.+++++|||+++ +||| +|+.++++++++|.+   ..++|+||+++|+|++||+..|.    ..
T Consensus       190 ~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~Al~~A~~---~~~~P~lI~~~T~kg~G~~~~~~~~~H~~  265 (673)
T 1r9j_A          190 SIDGSTSLSF-TEQCHQKYVAMGFHVIEVKNGDTDYEGLRKALAEAKA---TKGKPKMIVQTTTIGFGSSKQGTEKVHGA  265 (673)
T ss_dssp             CSSSBGGGTC-CCCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHH---CCSSCEEEEEECCTTTTSTTTTSGGGTSS
T ss_pred             ccccchhhcc-CHhHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHHHHH---cCCCCEEEEEecccccccccCCCcccccC
Confidence            9998877665 6789999999999999 9999 999999998877653   36899999999999999995554    23


Q ss_pred             CCCHHHHHHHhcC
Q 013928          339 LRDPAEKARYAAR  351 (434)
Q Consensus       339 yR~~~e~~~~~~~  351 (434)
                      +++++|++.++++
T Consensus       266 ~~~~ee~~~~~~~  278 (673)
T 1r9j_A          266 PLGEEDIANIKAK  278 (673)
T ss_dssp             CCCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHh
Confidence            5778888777543

>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*

Probab=99.94  E-value=7e-27  Score=254.46  Aligned_cols=160  Identities=24%  Similarity=0.256  Sum_probs=138.0

Q ss_pred             CcccCCcccccccchhhHHHHHHHHHHHhhhhhcC---CCceEEEEeCccccccchHHHHHHHHHHcCCC-eEEEEEcCC
Q 013928          188 HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEAD---CDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNL  263 (434)
Q Consensus       188 ~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~---~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vI~VV~NN~  263 (434)
                      .++...+|+||+++|+|+|+|+|.++++.+++..+   .+++|||++|||++++|+++|+|++|+.++|| +|+||+||+
T Consensus       107 ~g~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~  186 (669)
T 2r8o_A          107 AGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNG  186 (669)
T ss_dssp             TTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECS
T ss_pred             CCcccccccccchHHHHHHHHHHHHHhccccccCccCCcCCeEEEEECHhHhcchHHHHHHHHHHHcCCCcEEEEEECCC
Confidence            46778899999999999999999988765443322   37899999999999999999999999999999 999999999


Q ss_pred             ccCcccccccccCchhhhccccCCCcEE-EEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCC-CCC----C
Q 013928          264 WAIGMSHLRATSDPQIYKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSL-ADP----D  337 (434)
Q Consensus       264 y~is~~~~~~~~~~d~~~~a~a~Gi~~~-~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~-~D~----~  337 (434)
                      |+|+.+...+. .+++.+++++|||+++ +|||+|+.++++++++|.+   ..++|+||+++|+|+.||+. .++    .
T Consensus       187 ~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~---~~~~P~lI~~~T~kg~G~~~~~~~~~~H~  262 (669)
T 2r8o_A          187 ISIDGHVEGWF-TDDTAMRFEAYGWHVIRDIDGHDAASIKRAVEEARA---VTDKPSLLMCKTIIGFGSPNKAGTHDSHG  262 (669)
T ss_dssp             EETTEEGGGTC-CCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHH---CCSSCEEEEEECCTTTTCTTTTTSGGGTS
T ss_pred             cEecccccccc-CccHHHHHHHCCCeEEeEECCCCHHHHHHHHHHHHh---cCCCCEEEEEEeEeccCcCCcCCCCcccC
Confidence            99998766543 5789999999999999 9999999999998877653   36799999999999999995 443    4


Q ss_pred             CCCCHHHHHHHhcC
Q 013928          338 ELRDPAEKARYAAR  351 (434)
Q Consensus       338 ~yR~~~e~~~~~~~  351 (434)
                      .|++++|++.|+++
T Consensus       263 ~~~~~ee~~~~~~~  276 (669)
T 2r8o_A          263 APLGDAEIALTREQ  276 (669)
T ss_dssp             SCCCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHH
Confidence            69999999888654

>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*

Probab=99.94  E-value=7.1e-26  Score=244.52  Aligned_cols=205  Identities=20%  Similarity=0.238  Sum_probs=154.2

Q ss_pred             ccccCCCChHHHHHHHHHhcC---------CCCEEEc--cCcc---hHHHHHcCC--CHHHHH--HHHhcCCCCCccCCC
Q 013928          117 GFVHLYNGQEAVSTGFIKLLK---------KEDSVVS--TYRD---HVHALSKGV--PARAVM--SELFGKATGCCRGQG  178 (434)
Q Consensus       117 G~~h~~~GqEa~~~g~~~~L~---------~~D~v~~--~yR~---~~~~La~G~--~~~~i~--~el~g~~~g~~~G~g  178 (434)
                      |+...+.|.--+.+++...|+         +.|.++.  .|-+   +++.+..|.  +.+++.  +++.++.++      
T Consensus        27 GH~g~~lg~~ei~~~L~~~~~~~p~~p~~~~rDrfvls~GH~~~~lYa~l~l~G~~~~~~~l~~~r~~~s~~~g------  100 (632)
T 3l84_A           27 GHPGAPLGLADILSVLSYHLKHNPKNPTWLNRDRLVFSGGHASALLYSFLHLSGYDLSLEDLKNFRQLHSKTPG------  100 (632)
T ss_dssp             SCCHHHHHHHHHHHHHTTTCCCCTTCTTCTTSCEEEESSGGGHHHHHHHHHHHTCSCCHHHHTTTTCTTCSSCS------
T ss_pred             CCCCcChhHHHHHHHHHHHhCcCCCCCCCCCCCEEEEcCCcccHHHHHHHHHhCCCCCHHHHHHHhcCCCCCCC------
Confidence            444445666666666666665         3676655  4555   444444564  455542  222222222      


Q ss_pred             CCcccccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCC-eEE
Q 013928          179 GSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVF  257 (434)
Q Consensus       179 gs~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vI~  257 (434)
                         |.-....++...+|+||+++|+|+|+|+|.++++.+++....+++|||++|||++++|+++|+|++|+.++|| +|+
T Consensus       101 ---hp~~~~~g~~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~d~~v~~v~GDG~~~eG~~~Eal~~A~~~~L~~liv  177 (632)
T 3l84_A          101 ---HPEISTLGVEIATGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGISYEACSLAGLHKLDNFIL  177 (632)
T ss_dssp             ---SCCTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCTTTCCCCEEEEEEHHHHHSHHHHHHHHHHHHTTCTTEEE
T ss_pred             ---CCCCCCCCcccCCcchhhHHHHHHHHHHHHHhhccccccCCCCCeEEEEECCcchhhccHHHHHHHHHHcCCCcEEE
Confidence               2111234677788999999999999999999886544433458899999999999999999999999999998 999


Q ss_pred             EEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCCC
Q 013928          258 VVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLAD  335 (434)
Q Consensus       258 VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~~D  335 (434)
                      |++||+|+++.+.... ..+++.+++++|||++++|||+|+.++.+++++|    ++.++|+||+++|+|++||+..+
T Consensus       178 i~nnN~~~i~~~~~~~-~~~d~~~~~~a~G~~~~~vdGhd~~~l~~al~~A----~~~~~P~lI~v~T~kG~G~~~~e  250 (632)
T 3l84_A          178 IYDSNNISIEGDVGLA-FNENVKMRFEAQGFEVLSINGHDYEEINKALEQA----KKSTKPCLIIAKTTIAKGAGELE  250 (632)
T ss_dssp             EEEECSEETTEEGGGT-CCCCHHHHHHHTTCEEEEEETTCHHHHHHHHHHH----HTCSSCEEEEEECCTTTTCGGGT
T ss_pred             EEECCCcccccchhhh-cChhHHHHHHHcCCeEEEEeeCCHHHHHHHHHHH----HhCCCCEEEEEeeEeeecCCCCC
Confidence            9999999998876554 3678999999999999999999999998866654    55789999999999999998653

>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1

Probab=99.94  E-value=4.8e-26  Score=248.01  Aligned_cols=159  Identities=22%  Similarity=0.227  Sum_probs=133.5

Q ss_pred             CcccCCcccccccchhhHHHHHHHHHHHhhhhhcC---CCceEEEEeCccccccchHHHHHHHHHHcCCC-eEEEEEcCC
Q 013928          188 HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEAD---CDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNL  263 (434)
Q Consensus       188 ~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~---~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vI~VV~NN~  263 (434)
                      .++...+|+||+++|+|+|+|+|.++++.+++.++   ++++|||++|||++++|++||+|++|+.++|| +|+||+||+
T Consensus       120 ~~~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~i~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~  199 (675)
T 1itz_A          120 PGVEVTTGPLGQGIANAVGLALAEKHLAARFNKPDSEIVDHYTYVILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDNH  199 (675)
T ss_dssp             TTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECS
T ss_pred             CCeeECCccHHhHHHHHHHHHHHhhhhcccccccccCCCCCEEEEEECHhHhchhHHHHHHHHHHHhCCCcEEEEEECCC
Confidence            36677889999999999999999998865554322   68899999999999999999999999999995 999999999


Q ss_pred             ccCcccccccccCchhhhccccCCCcEE-EEeCC-CHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCC-CCCC--
Q 013928          264 WAIGMSHLRATSDPQIYKKGPAFGMPGF-HVDGM-DVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA-DPDE--  338 (434)
Q Consensus       264 y~is~~~~~~~~~~d~~~~a~a~Gi~~~-~VdG~-D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~~-D~~~--  338 (434)
                      |+|+.+..... .+++.+++++|||+++ +|||+ |+.++++++++|.+   ..++|+||+++|+|++||+.. ++..  
T Consensus       200 ~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~al~~a~~---~~~~P~lI~~~T~kg~G~~~~~~~~~~H  275 (675)
T 1itz_A          200 ISIDGDTEIAF-TEDVSTRFEALGWHTIWVKNGNTGYDDIRAAIKEAKA---VTDKPTLIKVTTTIGFGSPNKANSYSVH  275 (675)
T ss_dssp             EETTEEGGGTC-CSCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHH---CCSSCEEEEEECCTTTTCTTTTTSGGGT
T ss_pred             ccCCCChhhhc-ChhHHHHHHhCCCEEEEEecCCCCHHHHHHHHHHHHH---CCCCeEEEEEeeecccCcccccCccccc
Confidence            99988776544 6889999999999999 99999 99999987776643   257999999999999999965 3332  


Q ss_pred             --CCCHHHHHHHhc
Q 013928          339 --LRDPAEKARYAA  350 (434)
Q Consensus       339 --yR~~~e~~~~~~  350 (434)
                        ..++++++.+++
T Consensus       276 ~~~~~~e~~~~~~~  289 (675)
T 1itz_A          276 GSALGAKEVEATRQ  289 (675)
T ss_dssp             SSCCCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHH
Confidence              356666665543

>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*

Probab=99.94  E-value=5.4e-26  Score=247.46  Aligned_cols=143  Identities=24%  Similarity=0.296  Sum_probs=122.7

Q ss_pred             CcccCCcccccccchhhHHHHHHHHHHHhhhhhcC---CCceEEEEeCccccccchHHHHHHHHHHcCCC-eEEEEEcCC
Q 013928          188 HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEAD---CDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNL  263 (434)
Q Consensus       188 ~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~---~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vI~VV~NN~  263 (434)
                      .++...+|+||+++|+|+|+|+|.++++.+++..+   .+++|||++|||++++|+++|+|++|+.++|| +|+|++||+
T Consensus       133 pgv~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~v~~i~GDG~l~eG~~~Eal~~A~~~~L~~livI~dnN~  212 (690)
T 3m49_A          133 AGVDATTGPLGQGIATAVGMAMAERHLAAKYNRDAYNIVDHYTYAICGDGDLMEGVSAEASSLAAHLQLGRLVVLYDSND  212 (690)
T ss_dssp             TTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCSCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECS
T ss_pred             CccccCCccccccHHHHHHHHHHHHHhhccccccccccCCCeEEEEECchhhhhccHHHHHHHHHHhCCCeEEEEEECCC
Confidence            35666789999999999999999998765443221   37899999999999999999999999999998 899999999


Q ss_pred             ccCcccccccccCchhhhccccCCCcEEEE-eCCCHHHHHHHHHHHHHHHHc-cCCCEEEEEEEecCCCCCCCC
Q 013928          264 WAIGMSHLRATSDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARR-GEGPTLVECETYRFRGHSLAD  335 (434)
Q Consensus       264 y~is~~~~~~~~~~d~~~~a~a~Gi~~~~V-dG~D~~av~~a~~~Al~~ar~-~~gP~lIev~t~R~~gHs~~D  335 (434)
                      |+++.+.... ..+++.+++++|||++++| ||+|+.++.+++++    +++ .++|+||+++|+|++|++..+
T Consensus       213 ~~i~~~~~~~-~~~d~~~~~~a~G~~~~~v~DG~d~~~l~~Al~~----a~~~~~~P~lI~v~T~kG~G~~~~~  281 (690)
T 3m49_A          213 ISLDGDLNRS-FSESVEDRYKAYGWQVIRVEDGNDIEAIAKAIEE----AKADEKRPTLIEVRTTIGFGSPNKS  281 (690)
T ss_dssp             BCSSSBGGGT-CCCCHHHHHHHHTCEEEEESCTTCHHHHHHHHHH----HHHCCSSCEEEEEECCTTTTCTTTT
T ss_pred             eecccchhhc-cchhHHHHHHHcCCcEEEEecCCCHHHHHHHHHH----HHhcCCCCEEEEEEeecccccCccc
Confidence            9999877543 4578999999999999999 99999999886554    455 689999999999999998553

>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*

Probab=99.93  E-value=1e-25  Score=245.84  Aligned_cols=148  Identities=23%  Similarity=0.317  Sum_probs=115.6

Q ss_pred             CcccCCcccccccchhhHHHHHHHHHHHhhhhhcC---CCceEEEEeCccccccchHHHHHHHHHHcCCC-eEEEEEcCC
Q 013928          188 HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEAD---CDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNL  263 (434)
Q Consensus       188 ~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~---~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vI~VV~NN~  263 (434)
                      .++...+|+||+++|+|+|+|+|.++++.++++++   .+++|||++|||++++|+++|+|++|+.++|| +|+|++||+
T Consensus       148 ~gve~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~vv~i~GDG~l~eG~~~Eal~~A~~~~L~~livI~dnN~  227 (711)
T 3uk1_A          148 PGVETTTGPLGQGLANAVGMALGEALLAAEFNRDDAKIVDHHTYVFLGDGCLMEGISHEACSLAGTLKLNKLIALYDDNG  227 (711)
T ss_dssp             TTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECS
T ss_pred             CCcccCccchhhHHHHHHHHHHHHHhhcccccccccccCCCeEEEEECCcchhhccHHHHHHHHHHhCCCcEEEEEECCC
Confidence            36667889999999999999999998865443222   27899999999999999999999999999999 999999999


Q ss_pred             ccCcccccccccCchhhhccccCCCcEEE-EeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCC-CCCCCC
Q 013928          264 WAIGMSHLRATSDPQIYKKGPAFGMPGFH-VDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA-DPDELR  340 (434)
Q Consensus       264 y~is~~~~~~~~~~d~~~~a~a~Gi~~~~-VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~~-D~~~yR  340 (434)
                      |+++.+...+ ..+|+.+++++|||++++ |||+|+.++.+++++|    ++.++|+||+++|+|++||+.. ++..|.
T Consensus       228 ~~i~~~~~~~-~~~d~~~~~~a~G~~~~~~vdG~d~~~l~~Al~~A----~~~~~P~lI~v~T~kG~G~~~~e~~~~~H  301 (711)
T 3uk1_A          228 ISIDGDVVNW-FHDDTPKRFEAYGWNVIPNVNGHDVDAIDAAIAKA----KRSDKPSLICCKTRIGNGAATKAGGHDVH  301 (711)
T ss_dssp             EETTEEGGGT-CCCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHH----TTCSSCEEEEEEC----------------
T ss_pred             cccccchhhh-cCCCHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHH----HhCCCCEEEEEccccccCCCCCCCccccc
Confidence            9998877655 367899999999999998 9999999998866654    5578999999999999999864 444443

>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*

Probab=99.93  E-value=5.6e-25  Score=237.34  Aligned_cols=136  Identities=24%  Similarity=0.329  Sum_probs=118.9

Q ss_pred             cccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCC-eEEEEEcCCccCc
Q 013928          189 NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWAIG  267 (434)
Q Consensus       189 ~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vI~VV~NN~y~is  267 (434)
                      ++...+|+||+++|+|+|+|+|.++.+      ..+++|||++|||++++|++||+|++|+.|+|| +|+|++||+|+++
T Consensus       115 ~~d~~~G~lG~gl~~A~G~AlA~~~~~------~~~~~vv~v~GDG~~~eG~~~Eal~~A~~~~l~~livi~nnN~~~i~  188 (616)
T 3mos_A          115 FTDVATGSLGQGLGAACGMAYTGKYFD------KASYRVYCLLGDGELSEGSVWEAMAFASIYKLDNLVAILDINRLGQS  188 (616)
T ss_dssp             TCSSCCCSTTCHHHHHHHHHHHHHHTS------CCSCCEEEEEETGGGGSHHHHHHHHHHHHTTCTTEEEEEEECSBCSS
T ss_pred             cccccccccCCccHHHHHHHHHHHHhC------CCCCEEEEEECccccccCcHHHHHHHHHHcCCCcEEEEEECCCCCCc
Confidence            455578999999999999999987652      346899999999999999999999999999998 7888999999999


Q ss_pred             ccccccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCCCC
Q 013928          268 MSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADP  336 (434)
Q Consensus       268 ~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~~D~  336 (434)
                      .+.......+++.+++++|||++++|||+|+.++.++++++      .++|+||+++|+|++||+..++
T Consensus       189 ~~~~~~~~~~~~~~~~~a~G~~~~~VdG~d~~~l~~al~~~------~~~P~lI~v~T~kg~G~~~~e~  251 (616)
T 3mos_A          189 DPAPLQHQMDIYQKRCEAFGWHAIIVDGHSVEELCKAFGQA------KHQPTAIIAKTFKGRGITGVED  251 (616)
T ss_dssp             SBCTTTTCHHHHHHHHHHTTCEEEEEETTCHHHHHHHHHSC------CSSCEEEEEECCTTTTSTTTTT
T ss_pred             CCcccccChHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHhc------CCCCEEEEEEEecccccccccC
Confidence            87766655678999999999999999999999998876432      5799999999999999987643

>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}

Probab=99.92  E-value=7.8e-25  Score=237.66  Aligned_cols=143  Identities=24%  Similarity=0.300  Sum_probs=118.9

Q ss_pred             CcccCCcccccccchhhHHHHHHHHHHHhhhhhcC---CCceEEEEeCccccccchHHHHHHHHHHcCCC-eEEEEEcCC
Q 013928          188 HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEAD---CDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNL  263 (434)
Q Consensus       188 ~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~---~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vI~VV~NN~  263 (434)
                      .++...+|+||+++|+|+|+|+|.++++..++.++   .+++|||++|||++++|+++|+|++|++++|| +|+|++||+
T Consensus       109 ~gve~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~d~~v~~i~GDG~l~eG~~~Eal~~A~~~~L~~livi~dnN~  188 (663)
T 3kom_A          109 PGVETTTGPLGQGVANAVGMALGEKLLSDRYNTPDLKVIDHHTYVFLGDGCLMEGVSHEACSLAGTLGLNKLVAFWDDNN  188 (663)
T ss_dssp             TTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCSCCCCEEEEECHHHHHSHHHHHHHHHHHHHTCTTEEEEEEECC
T ss_pred             CCcccCCcchhhHHHHHHHHHHhHHhhcccccccccccCCCeEEEEECchhhhhchHHHHHHHHHHhCCCeEEEEEECCC
Confidence            35667889999999999999999998765433211   27899999999999999999999999999999 899999999


Q ss_pred             ccCcccccccccCchhhhccccCCCcEE-EEeCCCHHHHHHHHHHHHHHHHc-cCCCEEEEEEEecCCCCCCCC
Q 013928          264 WAIGMSHLRATSDPQIYKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARR-GEGPTLVECETYRFRGHSLAD  335 (434)
Q Consensus       264 y~is~~~~~~~~~~d~~~~a~a~Gi~~~-~VdG~D~~av~~a~~~Al~~ar~-~~gP~lIev~t~R~~gHs~~D  335 (434)
                      |+++.+.... ..+++.+++++|||+++ +|||+|+.++.+++++|    ++ .++|+||+++|+|++||+..+
T Consensus       189 ~~i~~~~~~~-~~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~A----~~~~~~P~lI~~~T~kg~G~~~~e  257 (663)
T 3kom_A          189 ISIDGDTKGW-FSDNTPERFRAYGWHVIENVDGHDFVAIEKAINEA----HSQQQKPTLICCKTVIGFGSPEKA  257 (663)
T ss_dssp             -----CGGGT-CCCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHH----HHCSSSCEEEEEECCTTTTCTTTT
T ss_pred             cccccchhhh-cchhHHHHHHHCCCeEEEEEcCCCHHHHHHHHHHH----HhcCCCCEEEEEecccccccCCCC
Confidence            9998876654 36789999999999999 99999999998866654    45 689999999999999998764

>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*

Probab=99.91  E-value=1.4e-23  Score=233.36  Aligned_cols=275  Identities=16%  Similarity=0.049  Sum_probs=182.4

Q ss_pred             HHhhcCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHH-HHHhcC------CCCEEEc
Q 013928           72 KEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTG-FIKLLK------KEDSVVS  144 (434)
Q Consensus        72 ~~~~~~~~~~~~~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g-~~~~L~------~~D~v~~  144 (434)
                      .|.|..+.........++.+-+..-+|...++.-.......+++.|+..++.|.--+..+ ....|+      ++|+|+.
T Consensus        60 l~~i~~~~~~~~p~d~~l~~~la~~iR~~~i~~v~~a~~~~~~~gGH~gs~ls~ael~~~l~~~~~~~~~~~~~~D~V~~  139 (886)
T 2qtc_A           60 INTIPVEEQPEYPGNLELERRIRSAIRWNAIMTVLRASKKDLELGGHMASFQSSATIYDVCFNHFFRARNEQDGGDLVYF  139 (886)
T ss_dssp             SCSSCGGGCCCCCSCHHHHHHHHHHHHHHHHHHHHHHHHTCSCCCCCSHHHHHHHHHHHHHHHHTCCCCCSSSCCCEEEC
T ss_pred             hhhCCCccccCCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccCcCCcHHHHHHHHHHHHHhcCCCCCCCCCCEEEE
Confidence            466655555455555566534444444444443222111334555665555665444333 345477      4787777


Q ss_pred             -cCcc---hHHHHHcCCCHHHHHHHHhcCCCCCccCCCCCcccccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhh
Q 013928          145 -TYRD---HVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKE  220 (434)
Q Consensus       145 -~yR~---~~~~La~G~~~~~i~~el~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~  220 (434)
                       .|-+   +++.+..|.-..+-|..+..-..+  .|..+..|....+.+....+|+||.+++.|+|+|++.++...+...
T Consensus       140 ~GH~sp~~Ya~~~l~Gr~~~e~l~~fRq~~~~--~gl~~~p~~~~~p~~~~~~tG~~G~g~s~AiG~A~a~~~l~~~~~~  217 (886)
T 2qtc_A          140 QGHISPGVYARAFLEGRLTQEQLDNFRQEVHG--NGLSSYPHPKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHRGLK  217 (886)
T ss_dssp             CGGGHHHHHHHHHHTTSSCHHHHTTBTCCTTS--SCBCSSCCTTTSTTTCCCCCCSTTHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             cchhHHHHHHHHHHhCCCCHHHHHhccCCCCC--CCCCCCCCcccCCCcccccccccCccHHHHHHHHHHhhhhcccccc
Confidence             4555   445566776433444444432111  1223322222112235567899999999999999999985332222


Q ss_pred             cCCCceEEEEeCccccccchHHHHHHHHHHcCCC-eEEEEEcCCccCcccccccc-cCchhhhccccCCCcEEEE-----
Q 013928          221 ADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWAIGMSHLRAT-SDPQIYKKGPAFGMPGFHV-----  293 (434)
Q Consensus       221 ~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vI~VV~NN~y~is~~~~~~~-~~~d~~~~a~a~Gi~~~~V-----  293 (434)
                      .+.+++|||++|||++++|++||+||+|+.++|+ +||||+||+|+|+.+..... ...++.++++++||++++|     
T Consensus       218 ~~~~~~v~aviGDG~l~eG~~~EAl~~A~~~~L~nli~Vvn~N~~si~~~v~~~~~~~~~l~~~~~~~G~~~~~v~~g~~  297 (886)
T 2qtc_A          218 DTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQRLDGPVTGNGKIINELEGIFEGAGWNVIKVMWGSR  297 (886)
T ss_dssp             CCTTCCEEEEEETGGGGSHHHHTTHHHHHHTTCTTEEEEEEECSBCSSSBSCTTSCHHHHHHHHHHHTTCEEEEECBCTT
T ss_pred             cCCCCEEEEEECCccccccchHHHHHHHHHcCCCcEEEEEECCCcccCCCccccccccHHHHHHHHhCCCCEEEEecchh
Confidence            3578899999999999999999999999999997 99999999999998876532 3468999999999999998     


Q ss_pred             ----------------------------------------------------------------eCCCHHHHHHHHHHHH
Q 013928          294 ----------------------------------------------------------------DGMDVLKVREVAKEAI  309 (434)
Q Consensus       294 ----------------------------------------------------------------dG~D~~av~~a~~~Al  309 (434)
                                                                                      ||+|+.+|++++++|.
T Consensus       298 ~~~ll~~~~~~~l~~~~~~~~d~~~q~~~~~~g~~~r~~~F~~~~~~~~l~~~~~d~~i~~l~~dGhD~~~l~~a~~~A~  377 (886)
T 2qtc_A          298 WDELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYVREHFFGKYPETAALVADWTDEQIWALNRGGHDPKKIYAAFKKAQ  377 (886)
T ss_dssp             HHHHHHHCSSCHHHHHHHHCCHHHHHHHTTSCHHHHHHHTSTTSHHHHTTTTTCCHHHHHTCCBGGGCHHHHHHHHHHHH
T ss_pred             HHHHHccCCchHHHHHHHhccchhhhhhhhccchHHHHhhcccchHHHHHHhhcChhhHhhcccCCCCHHHHHHHHHHHH
Confidence                                                                            6999999999888776


Q ss_pred             HHHHccCCCEEEEEEEecCCCCCCC--CCC-----CCCCHHHHHHHhcC
Q 013928          310 ERARRGEGPTLVECETYRFRGHSLA--DPD-----ELRDPAEKARYAAR  351 (434)
Q Consensus       310 ~~ar~~~gP~lIev~t~R~~gHs~~--D~~-----~yR~~~e~~~~~~~  351 (434)
                      +.   .++|+||+++|+|++||+..  ++.     .|++.++++.|+.+
T Consensus       378 ~~---~~~PtlI~~~T~KG~G~~~~~e~~~~~H~~~~l~~~~~~~~r~~  423 (886)
T 2qtc_A          378 ET---KGKATVILAHTIKGYGMGDAAKGKNIAHQVKKMNMDGVRHIRDR  423 (886)
T ss_dssp             HC---CSSCEEEEEECCTTTTCTTCC-------------CHHHHHHHHH
T ss_pred             Hc---CCCCEEEEEeeeeccccchhhcCCccccCCCCCCHHHHHHHHHH
Confidence            42   35899999999999999742  322     26677777776654

>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*

Probab=99.88  E-value=6.6e-23  Score=220.61  Aligned_cols=164  Identities=19%  Similarity=0.206  Sum_probs=124.6

Q ss_pred             cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCcc-
Q 013928          191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGM-  268 (434)
Q Consensus       191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~-  268 (434)
                      .++.++||+++|.|+|++++           .++++|||++|||+++++  +++|++|.++++|+++||.||+ |++.. 
T Consensus       416 ~~~~g~~G~~l~~A~Gaala-----------~~~~~vv~~~GDG~~~~~--~~~l~~a~~~~lp~~~vv~nN~~~~~~~~  482 (603)
T 4feg_A          416 SNLFATMGVGIPGAIAAKLN-----------YPERQVFNLAGDGGASMT--MQDLATQVQYHLPVINVVFTNCQYGFIKD  482 (603)
T ss_dssp             CCSSCCTTCHHHHHHHHHHH-----------CTTSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSBCHHHHH
T ss_pred             CcccccccchhHHHhhHHHh-----------CCCCcEEEEeccHHHhhh--HHHHHHHHHHCcCeEEEEEECCchHHHHH
Confidence            44679999999999999999           678899999999999997  8889999999999888887775 76521 


Q ss_pred             ---------cccccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEe---cCCCCCCCC-
Q 013928          269 ---------SHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETY---RFRGHSLAD-  335 (434)
Q Consensus       269 ---------~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~---R~~gHs~~D-  335 (434)
                               ........+|+.+++++||+++++|++.  .++.+++++|++  .+.+||+|||+.|+   |..+|...| 
T Consensus       483 ~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~--~~l~~al~~a~~--~~~~gP~lIev~~~~~~~~~~~~~~~~  558 (603)
T 4feg_A          483 EQEDTNQNDFIGVEFNDIDFSKIADGVHMQAFRVNKI--EQLPDVFEQAKA--IAQHEPVLIDAVITGDRPLPAEKLRLD  558 (603)
T ss_dssp             HHHHHCSSCCCSSBCCCCCHHHHHHHTTCEEEEECBG--GGHHHHHHHHHH--HTTTSCEEEEEECCCCCCCCTTSCCCC
T ss_pred             HHHHhcCCCcccCcCCCCCHHHHHHHCCCeEEEECCH--HHHHHHHHHHHH--hcCCCcEEEEEEeCCCCCCCcccchhh
Confidence                     1111224578999999999999999855  466665554431  16789999999994   445676665 


Q ss_pred             CCCCCCHH--HHHHHhcCChHHHHHHHHHHcCCCCHHH
Q 013928          336 PDELRDPA--EKARYAARDPITALKKYLIESSLASEAE  371 (434)
Q Consensus       336 ~~~yR~~~--e~~~~~~~DPl~~~~~~L~~~G~~te~e  371 (434)
                      +..||..+  +..+|.++||+++|+++|.++|++++++
T Consensus       559 ~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~g~~~~~~  596 (603)
T 4feg_A          559 SAMSSAADIEAFKQRYEAQDLQPLSTYLKQFGLDDLQH  596 (603)
T ss_dssp             TTTSCHHHHHHHHHHHTCTTCCCHHHHHHHTTC-----
T ss_pred             hhhhhHHHHHHHHhhCCcccCCchHHHHHHcCCchhhh
Confidence            45576544  5566667899999999999999998665

>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*

Probab=99.70  E-value=2.8e-17  Score=176.32  Aligned_cols=122  Identities=24%  Similarity=0.324  Sum_probs=101.5

Q ss_pred             CCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcC-CccCcccc
Q 013928          192 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN-LWAIGMSH  270 (434)
Q Consensus       192 ~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN-~y~is~~~  270 (434)
                      ++.|+||+++|.|+|+++|           .++++|||++|||+++++  +++|++|.++++|+++||.|| +|++....
T Consensus       410 ~~~g~mG~~l~~AiGaala-----------~~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~  476 (590)
T 1v5e_A          410 PLFATMGIAIPGGLGAKNT-----------YPDRQVWNIIGDGAFSMT--YPDVVTNVRYNMPVINVVFSNTEYAFIKNK  476 (590)
T ss_dssp             CSSCCTTCHHHHHHHHHHH-----------CTTSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSSCTTGGGT
T ss_pred             CCCCcccChHHHHHHHHHh-----------CCCCeEEEEEechHHhch--HHHHHHHHHhCCCCEEEEEECCchHHHHHH
Confidence            4689999999999999999           678899999999999997  799999999999977777655 67776432


Q ss_pred             ccc---------ccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCC
Q 013928          271 LRA---------TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR  329 (434)
Q Consensus       271 ~~~---------~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~  329 (434)
                      +..         ...+|+.+++++||+++++|+  ++.++.+++++|++..+. ++|+|||+.|+|..
T Consensus       477 q~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~~~~~-~gp~liev~~~~~~  541 (590)
T 1v5e_A          477 YEDTNKNLFGVDFTDVDYAKIAEAQGAKGFTVS--RIEDMDRVMAEAVAANKA-GHTVVIDCKITQDR  541 (590)
T ss_dssp             TSSSCCSCCCCCCCCCCHHHHHHHTTSEEEEEC--BHHHHHHHHHHHHHHHHT-TCCEEEEEECCSCC
T ss_pred             HHHhcCCCccccCCCCCHHHHHHHcCCEEEEEC--CHHHHHHHHHHHHHhcCC-CCCEEEEEEecccc
Confidence            211         134789999999999999998  467888888888766553 79999999999865

>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}

Probab=99.67  E-value=5.4e-17  Score=174.89  Aligned_cols=124  Identities=20%  Similarity=0.178  Sum_probs=102.0

Q ss_pred             cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcC-CccCccc
Q 013928          191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN-LWAIGMS  269 (434)
Q Consensus       191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN-~y~is~~  269 (434)
                      .+++|+||+++|.|+|+|+|           .++++|||++|||+++++  +++|++|.++++|+++||.|| +|++...
T Consensus       438 ~g~~G~~G~~l~~AiGaala-----------~~~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~~~  504 (616)
T 2pan_A          438 CGQAGPLGWTIPAALGVCAA-----------DPKRNVVAISGDFDFQFL--IEELAVGAQFNIPYIHVLVNNAYLGLIRQ  504 (616)
T ss_dssp             CTTTCCTTCHHHHHHHHHHH-----------CTTCEEEEEEEHHHHHHT--GGGHHHHHHTTCCCEEEEEECSBCHHHHH
T ss_pred             CCCcccccchHHHHHHHHHh-----------CCCCcEEEEEcchhhhCC--HHHHHHHHHhCCCeEEEEEECCcchHHHH
Confidence            46679999999999999999           678899999999999987  789999999999977766666 5776422


Q ss_pred             cc----------------cccc----CchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCC
Q 013928          270 HL----------------RATS----DPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR  329 (434)
Q Consensus       270 ~~----------------~~~~----~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~  329 (434)
                      ..                ....    .+|+.+++++||+++++|++  +.++.+++++|+++++..++|+|||+.|+|..
T Consensus       505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~--~~el~~al~~a~~~~~~~~gp~lIev~~~~~~  582 (616)
T 2pan_A          505 SQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVFK--PEDIAPAFEQAKALMAQYRVPVVVEVILERVT  582 (616)
T ss_dssp             HGGGGTCCCSCBCCCCCTTCGGGTTCCCCHHHHHHHTTCEEEEECS--GGGHHHHHHHHHHHHHHHCSCEEEEEEBCSCC
T ss_pred             HHHHhcCCccccccccccccccCCCCCCCHHHHHHHcCCeEEEECC--HHHHHHHHHHHHhhcccCCCcEEEEEEecccc
Confidence            10                0111    26899999999999999974  56888999988877776789999999999866

>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*

Probab=99.66  E-value=3.5e-17  Score=173.10  Aligned_cols=114  Identities=22%  Similarity=0.415  Sum_probs=93.4

Q ss_pred             ccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcC-CccCcccccc-
Q 013928          195 AFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN-LWAIGMSHLR-  272 (434)
Q Consensus       195 g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN-~y~is~~~~~-  272 (434)
                      |+||+++|.|+|+++|           .++++|||++|||+++++  +++|++|.++++|+++||.|| +|++...... 
T Consensus       401 g~~G~~l~~A~G~a~a-----------~~~~~vv~~~GDG~~~~~--~~~l~~a~~~~l~~~ivv~nN~~~~~~~~~~~~  467 (528)
T 1q6z_A          401 GGLGFALPAAIGVQLA-----------EPERQVIAVIGDGSANYS--ISALWTAAQYNIPTIFVIMNNGTYGALRWFAGV  467 (528)
T ss_dssp             CCTTSHHHHHHHHHHH-----------CTTSCEEEEEEHHHHTTT--GGGHHHHHHHTCCCEEEEEECSBCHHHHHHHHH
T ss_pred             ccccchHHHHHHHHHh-----------CCCCcEEEEECCcHHHhh--HHHHHHHHHhCCCeEEEEEeCCcchHhHHHHHH
Confidence            9999999999999999           677899999999999998  899999999999988877766 5777443210 


Q ss_pred             ---------cccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928          273 ---------ATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR  327 (434)
Q Consensus       273 ---------~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R  327 (434)
                               ....+|+.+++++||+++++|++.  .++.+    +++++++.++|+|||+.|++
T Consensus       468 ~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~--~~l~~----al~~a~~~~gp~liev~~~~  525 (528)
T 1q6z_A          468 LEAENVPGLDVPGIDFRALAKGYGVQALKADNL--EQLKG----SLQEALSAKGPVLIEVSTVS  525 (528)
T ss_dssp             HTCCSCCSCBCCCCCHHHHHHHHTCEEEEESSH--HHHHH----HHHHHHTCSSCEEEEEEBCC
T ss_pred             hcCCCcccCCCCCCCHHHHHHHcCCeEEEeCCH--HHHHH----HHHHHHHCCCcEEEEEEecC
Confidence                     013568999999999999999865  45555    55555667899999999975

>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*

Probab=99.64  E-value=1.3e-16  Score=171.18  Aligned_cols=122  Identities=23%  Similarity=0.316  Sum_probs=98.1

Q ss_pred             CCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcC-CccCcccc
Q 013928          192 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN-LWAIGMSH  270 (434)
Q Consensus       192 ~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN-~y~is~~~  270 (434)
                      .+.|+||+++|.|+|+++|           .++++|||++|||+|+++  +++|++|.++++|+++||.|| +|++....
T Consensus       421 ~g~g~mG~~l~~AiGaala-----------~~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~~~~~  487 (589)
T 2pgn_A          421 MAEGILGCGFPMALGAQLA-----------EPNSRVFLGTGDGALYYH--FNEFRVAVEHKLPVITMVFTNESYGANWTL  487 (589)
T ss_dssp             TTTCCTTCHHHHHHHHHHH-----------CTTSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSBCHHHHHH
T ss_pred             CCcchhhhHHHHHHHHHHh-----------CCCCcEEEEEeeHHHHhh--HHHHHHHHHhCCCeEEEEEECCCcccchHH
Confidence            4579999999999999999           678899999999999997  699999999999977777666 57665432


Q ss_pred             c---------ccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCC
Q 013928          271 L---------RATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHS  332 (434)
Q Consensus       271 ~---------~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs  332 (434)
                      .         .....+|+.+++++||+++++|++.  .++.+++++|+    +.++|+|||+.|+|..+..
T Consensus       488 ~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~--~el~~al~~a~----~~~gp~liev~~~~~~~~~  552 (589)
T 2pgn_A          488 MNHQFGQNNWTEFMNPDWVGIAKAFGAYGESVRET--GDIAGALQRAI----DSGKPALIEIPVSKTQGLA  552 (589)
T ss_dssp             HHHHHSSCCSCBCCCCCHHHHHHHHTCEEEECTTT--CCHHHHHHHHH----HHCSCEEEEEECCSSSSTT
T ss_pred             HHhhcCCCccccCCCCCHHHHHHHCCCeEEEECCH--HHHHHHHHHHH----hCCCCEEEEEEecCCCCcC
Confidence            1         1123578999999999999999865  47767666654    4579999999999876543

>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*

Probab=99.63  E-value=1.5e-16  Score=169.81  Aligned_cols=119  Identities=18%  Similarity=0.211  Sum_probs=95.7

Q ss_pred             cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcC-CccCccc
Q 013928          191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN-LWAIGMS  269 (434)
Q Consensus       191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN-~y~is~~  269 (434)
                      .++.|+||+++|.|+|+++|           .++++|||++|||+++++  +++|++|.++++|+++||.|| +|++...
T Consensus       416 ~~g~g~mG~~l~~AiGaala-----------~~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~~~~  482 (566)
T 1ozh_A          416 SNGQQTMGVALPWAIGAWLV-----------NPERKVVSVSGDGGFLQS--SMELETAVRLKANVLHLIWVDNGYNMVAI  482 (566)
T ss_dssp             CCTTCCTTCHHHHHHHHHHH-----------STTSEEEEEEEHHHHHHH--TTHHHHHHHHTCCEEEEEEECSBCHHHHH
T ss_pred             CCCcccccchHHHHHHHHHh-----------CCCCCEEEEEcChHHhcc--HHHHHHHHHhCCCcEEEEEECCchhHHHH
Confidence            45679999999999999999           678899999999999986  688999999999977777666 5766442


Q ss_pred             cc---------ccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecC
Q 013928          270 HL---------RATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF  328 (434)
Q Consensus       270 ~~---------~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~  328 (434)
                      ..         .....+|+.+++++||+++++|++  +.++.+++++|+    +.++|+|||+.|+|.
T Consensus       483 ~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~--~~el~~al~~a~----~~~gp~liev~~~~~  544 (566)
T 1ozh_A          483 QEEKKYQRLSGVEFGPMDFKAYAESFGAKGFAVES--AEALEPTLRAAM----DVDGPAVVAIPVDYR  544 (566)
T ss_dssp             HHHHHHSSCCSCBCCCCCHHHHHHTTTSEEEECCS--GGGHHHHHHHHH----HSSSCEEEEEEBCCT
T ss_pred             HHHHhcCCCccCcCCCCCHHHHHHHcCCeEEEeCC--HHHHHHHHHHHH----hCCCCEEEEEEeCCC
Confidence            21         122347899999999999999985  457767666554    568999999999864

>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*

Probab=99.62  E-value=2.3e-16  Score=171.93  Aligned_cols=121  Identities=24%  Similarity=0.351  Sum_probs=96.9

Q ss_pred             cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcC-CccCccc
Q 013928          191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN-LWAIGMS  269 (434)
Q Consensus       191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN-~y~is~~  269 (434)
                      .+++|+||+++|+|+|+++|           .+++.|||++|||+|+++  +++|++|.++++|+++||.|| +|++...
T Consensus       509 sg~~G~mG~~lpaAiGaalA-----------~p~~~Vv~i~GDGsf~~~--~~eL~ta~~~~l~v~ivV~NN~~~g~~~~  575 (677)
T 1t9b_A          509 SGGLGTMGYGLPAAIGAQVA-----------KPESLVIDIDGDASFNMT--LTELSSAVQAGTPVKILILNNEEQGMVTQ  575 (677)
T ss_dssp             CCSSCCTTCHHHHHHHHHHH-----------CTTSEEEEEEEHHHHHHH--GGGHHHHHHHTCCCEEEEEECSSCHHHHH
T ss_pred             CCCcchhhchHHHHHHHHHh-----------CCCCeEEEEEeehHHhcc--HHHHHHHHHhCCCeEEEEEeCCCchhhhh
Confidence            56679999999999999999           678999999999999986  678999999999977666655 5765432


Q ss_pred             cc----------ccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCC
Q 013928          270 HL----------RATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRG  330 (434)
Q Consensus       270 ~~----------~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~g  330 (434)
                      ..          .....+|+.+++++||+++++|+  ++.++.+++++|+    ..++|+|||+.|+|...
T Consensus       576 ~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~----~~~gp~lIev~~~~~~~  640 (677)
T 1t9b_A          576 WQSLFYEHRYSHTHQLNPDFIKLAEAMGLKGLRVK--KQEELDAKLKEFV----STKGPVLLEVEVDKKVP  640 (677)
T ss_dssp             HHHHHSTTCCCSCCCCCCCHHHHHHHTTCEEEEEC--SHHHHHHHHHHHH----HCSSCEEEEEEBCSSCC
T ss_pred             hhhhhcCCCcccCcCCCCCHHHHHHHcCCeEEEEC--CHHHHHHHHHHHH----HCCCcEEEEEEecCCcc
Confidence            11          01235789999999999999997  4667777666554    46899999999998654

>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9

Probab=99.62  E-value=3.4e-16  Score=166.25  Aligned_cols=118  Identities=17%  Similarity=0.125  Sum_probs=94.2

Q ss_pred             cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcC-CccCccc
Q 013928          191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN-LWAIGMS  269 (434)
Q Consensus       191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN-~y~is~~  269 (434)
                      .++.|+||+++|.|+|+++|           .++++|||++|||+++++  +++|.+|.++++|+++||.|| +|++...
T Consensus       404 ~~~~g~mG~~l~~A~G~a~a-----------~~~~~vv~~~GDG~~~~~--~~el~ta~~~~l~~~ivv~nN~~~~~~~~  470 (552)
T 1ovm_A          404 QPLWGSIGYTLAAAFGAQTA-----------CPNRRVIVLTGDGAAQLT--IQELGSMLRDKQHPIILVLNNEGYTVERA  470 (552)
T ss_dssp             CTTTCCTTHHHHHHHHHHHH-----------CTTSCEEEEEEHHHHHHH--TTHHHHHHHTTCCCEEEEEESSSCHHHHH
T ss_pred             chhhHhhhhHHHHHHHHHHh-----------CCCCcEEEEECchHHHhH--HHHHHHHHHhCCCCEEEEEECCCCeEEEe
Confidence            45689999999999999999           678899999999999986  889999999999977776655 5776532


Q ss_pred             cc------ccccCchhhhccccCCC----cEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928          270 HL------RATSDPQIYKKGPAFGM----PGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR  327 (434)
Q Consensus       270 ~~------~~~~~~d~~~~a~a~Gi----~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R  327 (434)
                      ..      .....+|+.+++++||+    ++++|++  +.++.+++    +++++.++|+|||+.|++
T Consensus       471 ~~~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~~v~~--~~~l~~al----~~a~~~~gp~liev~~~~  532 (552)
T 1ovm_A          471 IHGAEQRYNDIALWNWTHIPQALSLDPQSECWRVSE--AEQLADVL----EKVAHHERLSLIEVMLPK  532 (552)
T ss_dssp             HSCTTCGGGCCCCCCGGGSTTTSCSSCCEEEEEECB--HHHHHHHH----HHHTTCSSEEEEEEECCT
T ss_pred             eccCCCCcccCCCCCHHHHHHHhCCCcCCCEEEeCC--HHHHHHHH----HHHHhCCCCEEEEEEcCc
Confidence            11      11234789999999999    8999984  55666644    455567899999999975

>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*

Probab=99.62  E-value=2.6e-16  Score=168.11  Aligned_cols=118  Identities=24%  Similarity=0.217  Sum_probs=95.1

Q ss_pred             cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcC-CccCccc
Q 013928          191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN-LWAIGMS  269 (434)
Q Consensus       191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN-~y~is~~  269 (434)
                      .++.|+||+++|.|+|+++|           .++++|||++|||+++++  +++|++|.++++|+++||.|| +|++...
T Consensus       432 ~~g~g~mG~~l~~AiGaa~a-----------~~~~~vv~i~GDG~~~~~--~~~L~~a~~~~l~~~ivv~NN~~~~~~~~  498 (573)
T 2iht_A          432 SAGCSSFGYGIPAAIGAQMA-----------RPDQPTFLIAGDGGFHSN--SSDLETIARLNLPIVTVVVNNDTNGLIEL  498 (573)
T ss_dssp             CSSSCCTTCHHHHHHHHHHH-----------STTSCEEEEEEHHHHHHT--GGGHHHHHHHTCCCEEEEEECSBCHHHHH
T ss_pred             CCCCcccccHHHHHHHHHHh-----------CCCCcEEEEEccHHHHhH--HHHHHHHHHhCCCeEEEEEECCcchhhHH
Confidence            35679999999999999999           578899999999999987  789999999999976666655 5776543


Q ss_pred             c---------c--ccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928          270 H---------L--RATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR  327 (434)
Q Consensus       270 ~---------~--~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R  327 (434)
                      .         .  .....+|+.+++++||+++++|+  +..++.+++++    +++.++|+|||+.|+|
T Consensus       499 ~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~----a~~~~gp~liev~~~~  561 (573)
T 2iht_A          499 YQNIGHHRSHDPAVKFGGVDFVALAEANGVDATRAT--NREELLAALRK----GAELGRPFLIEVPVNY  561 (573)
T ss_dssp             HHHHHHSSCCGGGTBCCCCCHHHHHHHTTCEEEECC--SHHHHHHHHHH----HHTSSSCEEEEEEBCC
T ss_pred             HHHHhcCCCcCccccCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHH----HHhCCCCEEEEEECCC
Confidence            1         0  12234789999999999999997  45666665554    4567899999999988

>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*

Probab=99.62  E-value=3.3e-16  Score=167.88  Aligned_cols=122  Identities=23%  Similarity=0.323  Sum_probs=96.7

Q ss_pred             cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcC-CccCccc
Q 013928          191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN-LWAIGMS  269 (434)
Q Consensus       191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN-~y~is~~  269 (434)
                      .+++|+||+++|+|+|+++|           .++++|||++|||+++++  +++|++|.++++|+++||.|| +|++...
T Consensus       422 ~g~~G~~G~~l~~AiGaala-----------~~~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~~~  488 (590)
T 1ybh_A          422 SGGLGAMGFGLPAAIGASVA-----------NPDAIVVDIDGDGSFIMN--VQELATIRVENLPVKVLLLNNQHLGMVMQ  488 (590)
T ss_dssp             CCSSCCTTCHHHHHHHHHHH-----------CTTSCEEEEEEHHHHHHT--TTHHHHHHHTTCCEEEEEEECSBCHHHHH
T ss_pred             CCCcccccchHHHHHHHHHh-----------CCCCcEEEEEccchhhcc--HHHHHHHHHhCCCcEEEEEECCcchHHHH
Confidence            45679999999999999999           678899999999999987  789999999999976666555 6766432


Q ss_pred             cc---------cc---c------cCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCC
Q 013928          270 HL---------RA---T------SDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGH  331 (434)
Q Consensus       270 ~~---------~~---~------~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gH  331 (434)
                      ..         ..   .      ..+|+.+++++||+++++|+  ++.++.+++++|    .+.++|+|||+.|+|....
T Consensus       489 ~~~~~~~~~~~~~~~~~p~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a----~~~~gp~liev~~~~~~~~  562 (590)
T 1ybh_A          489 WEDRFYKANRAHTFLGDPAQEDEIFPNMLLFAAACGIPAARVT--KKADLREAIQTM----LDTPGPYLLDVICPHQEHV  562 (590)
T ss_dssp             HHHHHSTTCCCSCBCSCGGGTTSCSSCHHHHHHHTTCCEEEEC--BHHHHHHHHHHH----HHSSSCEEEEEECCTTCCC
T ss_pred             HHHHhcCCccccccccccccccCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHH----HhCCCCEEEEEEecCCccc
Confidence            10         00   1      14689999999999999997  456776655555    4568999999999987653

>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}

Probab=99.61  E-value=2.9e-16  Score=167.50  Aligned_cols=153  Identities=20%  Similarity=0.288  Sum_probs=109.0

Q ss_pred             CCHHHHHHHHhcCCCCCc--cCCCC-----CcccccC-CCcc--cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCce
Q 013928          157 VPARAVMSELFGKATGCC--RGQGG-----SMHMFSK-EHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHV  226 (434)
Q Consensus       157 ~~~~~i~~el~g~~~g~~--~G~gg-----s~h~~~~-~~~~--~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~  226 (434)
                      +++..++.++....+...  ..+.|     ++++..+ +..+  .+++|+||+++|.|+|+++|           .++++
T Consensus       361 l~~~~~~~~l~~~l~~~~iv~~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~A~G~ala-----------~~~~~  429 (566)
T 2vbi_A          361 LTNDEIVRHINALLTSNTTLVAETGDSWFNAMRMTLPRGARVELEMQWGHIGWSVPSAFGNAMG-----------SQDRQ  429 (566)
T ss_dssp             CCHHHHHHHHHHHCCTTEEEEECSSHHHHHHHTCCCCTTCEEECCTTTCCTTTHHHHHHHHHHT-----------CTTSE
T ss_pred             cCHHHHHHHHHHhcCCCCEEEECCchHHHhhhheECCCCCEEEecCcccchhhHHHHHHHHHHh-----------CCCCc
Confidence            566677766665544321  12222     2222222 1222  35689999999999999999           67889


Q ss_pred             EEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcC-CccCcccccc----cccCchhhhccccCCC-----cEEEEeCC
Q 013928          227 TLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN-LWAIGMSHLR----ATSDPQIYKKGPAFGM-----PGFHVDGM  296 (434)
Q Consensus       227 vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN-~y~is~~~~~----~~~~~d~~~~a~a~Gi-----~~~~VdG~  296 (434)
                      |||++|||+++++  +++|++|.++++|+++||.|| +|++......    ....+|+.+++++||+     ++++|+  
T Consensus       430 vv~~~GDG~~~~~--~~eL~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~~~v~--  505 (566)
T 2vbi_A          430 HVVMVGDGSFQLT--AQEVAQMVRYELPVIIFLINNRGYVIEIAIHDGPYNYIKNWDYAGLMEVFNAGEGHGLGLKAT--  505 (566)
T ss_dssp             EEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSSCHHHHTTSCCGGGCCCCCCTTTHHHHHHTTTCCCEEEEEC--
T ss_pred             EEEEEcchHHHhh--HHHHHHHHHhCCCcEEEEEECCcceEEEeeccCCccCCCCCCHHHHHHHcCCCCCCccEEEeC--
Confidence            9999999999986  678999999999966666555 6776543221    1235689999999999     999997  


Q ss_pred             CHHHHHHHHHHHHHHHHcc-CCCEEEEEEEecC
Q 013928          297 DVLKVREVAKEAIERARRG-EGPTLVECETYRF  328 (434)
Q Consensus       297 D~~av~~a~~~Al~~ar~~-~gP~lIev~t~R~  328 (434)
                      ++.++.++++++    ... ++|+|||+.|+|.
T Consensus       506 ~~~el~~al~~a----~~~~~gp~liev~~~~~  534 (566)
T 2vbi_A          506 TPKELTEAIARA----KANTRGPTLIECQIDRT  534 (566)
T ss_dssp             SHHHHHHHHHHH----HHCCSSCEEEEEECCTT
T ss_pred             CHHHHHHHHHHH----HhcCCCcEEEEEEeCcc
Confidence            456776665555    444 7999999999763

>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*

Probab=99.61  E-value=3.2e-16  Score=166.97  Aligned_cols=157  Identities=15%  Similarity=0.117  Sum_probs=109.6

Q ss_pred             CCHHHHHHHHhcCCCCCc--cCCCCCc----ccc--cCCCc--ccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCce
Q 013928          157 VPARAVMSELFGKATGCC--RGQGGSM----HMF--SKEHN--LLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHV  226 (434)
Q Consensus       157 ~~~~~i~~el~g~~~g~~--~G~ggs~----h~~--~~~~~--~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~  226 (434)
                      +++..++.++....++..  ..+.|..    ..+  .....  ..+++|+||+++|.|+|+|+|.+.+       +.+++
T Consensus       365 ~~~~~~~~~l~~~l~~~~iv~~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~A~Gaala~~~~-------~~~~~  437 (563)
T 2vk8_A          365 LKQEWMWNQLGNFLQEGDVVIAETGTSAFGINQTTFPNNTYGISQVLWGSIGFTTGATLGAAFAAEEI-------DPKKR  437 (563)
T ss_dssp             CCHHHHHHHHTTTCCTTCEEEECTTHHHHHGGGSCCCSSCEEECCTTTCCTTHHHHHHHHHHHHHHHH-------CTTCC
T ss_pred             cCHHHHHHHHHHhCCCCCEEEECCchHHHHHhhcCcCCCCeEEcccchhhhhhHHHHHHHHHHhCccc-------CCCCC
Confidence            567777777776654331  2222321    111  11122  2467899999999999999997654       45688


Q ss_pred             EEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcC-CccCccccc------ccccCchhhhccccCCCc---EEEEeCC
Q 013928          227 TLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN-LWAIGMSHL------RATSDPQIYKKGPAFGMP---GFHVDGM  296 (434)
Q Consensus       227 vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN-~y~is~~~~------~~~~~~d~~~~a~a~Gi~---~~~VdG~  296 (434)
                      |||++|||+|+++  +++|++|.++++|+++||.|| +|++.....      .....+|+.+++++||++   +++|++ 
T Consensus       438 vv~~~GDG~~~~~--~~el~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~v~~-  514 (563)
T 2vk8_A          438 VILFIGDGSLQLT--VQEISTMIRWGLKPYLFVLNNDGYTIQKLIHGPKAQYNEIQGWDHLSLLPTFGAKDYETHRVAT-  514 (563)
T ss_dssp             EEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTCGGGCCCCCCGGGHHHHTTCSSEEEEEECB-
T ss_pred             EEEEEcchHhhcc--HHHHHHHHHcCCCcEEEEEECCcchhhhhhhCCCCCcccCCCCCHHHHHHHhCCCCCcEEEecC-
Confidence            9999999999986  789999999999977777655 577643211      112346899999999999   999985 


Q ss_pred             CHHHHHHHHH-HHHHHHHccCCCEEEEEEEec
Q 013928          297 DVLKVREVAK-EAIERARRGEGPTLVECETYR  327 (434)
Q Consensus       297 D~~av~~a~~-~Al~~ar~~~gP~lIev~t~R  327 (434)
                       +.++.++++ ++++   ..++|+|||+.|++
T Consensus       515 -~~el~~al~~~a~~---~~~~p~liev~~~~  542 (563)
T 2vk8_A          515 -TGEWDKLTQDKSFN---DNSKIRMIEVMLPV  542 (563)
T ss_dssp             -HHHHHHHHTCTTTT---SCSSEEEEEEECCT
T ss_pred             -HHHHHHHHHHHHHh---CCCCcEEEEEEeCc
Confidence             557666555 4331   23479999999874

>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*

Probab=99.61  E-value=5.6e-16  Score=164.78  Aligned_cols=120  Identities=23%  Similarity=0.290  Sum_probs=93.8

Q ss_pred             cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcC-CccCccc
Q 013928          191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN-LWAIGMS  269 (434)
Q Consensus       191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN-~y~is~~  269 (434)
                      .++.|+||+++|.|+|+++|           .+++.|||++|||+|+++  +++|++|.++++|+++||.|| +|++...
T Consensus       402 ~~~~g~mG~~l~~AiGaala-----------~~~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~nN~~~g~~~~  468 (549)
T 3eya_A          402 SFNHGSMANAMPQALGAQAT-----------EPERQVVAMCGDGGFSML--MGDFLSVVQMKLPVKIVVFNNSVLGFVAM  468 (549)
T ss_dssp             CTTTCCTTCHHHHHHHHHHH-----------STTSCEEEEEEHHHHHHT--GGGHHHHHHTTCCCEEEEEECSBCCCC--
T ss_pred             CCCCchhhhHHHHHHHHHHh-----------CCCCcEEEEEccchhhcc--HHHHHHHHHhCCCeEEEEEeCCccHHHHH
Confidence            34679999999999999999           678899999999999987  789999999999976666655 5765322


Q ss_pred             ccc---------cccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCC
Q 013928          270 HLR---------ATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR  329 (434)
Q Consensus       270 ~~~---------~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~  329 (434)
                      ...         ....+|+.+++++||+++++|+..  .++.++++++    ++.+||+|||+.|.+..
T Consensus       469 ~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~--~~l~~al~~a----~~~~gp~liev~~~~~~  531 (549)
T 3eya_A          469 EMKAGGYLTDGTELHDTNFARIAEACGITGIRVEKA--SEVDEALQRA----FSIDGPVLVDVVVAKEE  531 (549)
T ss_dssp             ----------CCBCCCCCHHHHHHHTTSEEEEECSG--GGHHHHHHHH----HHSSSCEEEEEEBCCCC
T ss_pred             HHHhcCCCCcCCcCCCCCHHHHHHHcCCcEEEeCCH--HHHHHHHHHH----HhCCCCEEEEEEecccc
Confidence            111         113468999999999999999754  4666655554    45689999999998754

>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*

Probab=99.61  E-value=5.3e-16  Score=165.53  Aligned_cols=118  Identities=22%  Similarity=0.271  Sum_probs=94.4

Q ss_pred             cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEE-cCCccCccc
Q 013928          191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVE-NNLWAIGMS  269 (434)
Q Consensus       191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~-NN~y~is~~  269 (434)
                      .+++|+||+++|.|+|+++|           .++++|||++|||+++++  +++|++|.++++|+++||. ||+|++...
T Consensus       409 ~~~~g~~G~~l~~A~G~ala-----------~~~~~vv~i~GDGs~~~~--~~el~ta~~~~l~~~ivv~NN~~~~~~~~  475 (568)
T 2wvg_A          409 EMQWGHIGWSVPAAFGYAVG-----------APERRNILMVGDGSFQLT--AQEVAQMVRLKLPVIIFLINNYGYTIEVM  475 (568)
T ss_dssp             CTTTCCTTTHHHHHHHHHHH-----------CTTSEEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSSCHHHHT
T ss_pred             CCCcchhhhHHHHHHHHHHh-----------CCCCcEEEEEcChhHhcc--HHHHHHHHHcCCCcEEEEEECCcceEeee
Confidence            45689999999999999999           678899999999999986  7889999999999766665 556776543


Q ss_pred             ccc----cccCchhhhccccCCC---------cEEEEeCCCHHHHHHHHHHHHHHHHcc-CCCEEEEEEEec
Q 013928          270 HLR----ATSDPQIYKKGPAFGM---------PGFHVDGMDVLKVREVAKEAIERARRG-EGPTLVECETYR  327 (434)
Q Consensus       270 ~~~----~~~~~d~~~~a~a~Gi---------~~~~VdG~D~~av~~a~~~Al~~ar~~-~gP~lIev~t~R  327 (434)
                      ...    ....+|+.+++++||+         ++++|+  +..++.+++++++    .. ++|+|||+.|+|
T Consensus       476 ~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~~~~~~~v~--~~~el~~al~~a~----~~~~gp~liev~~~~  541 (568)
T 2wvg_A          476 IHDGPYNNIKNWDYAGLMEVFNGNGGYDSGAGKGLKAK--TGGELAEAIKVAL----ANTDGPTLIECFIGR  541 (568)
T ss_dssp             TSCCGGGCCCCCCHHHHHHHHHCTTSSSCCCCEEEEES--BHHHHHHHHHHHH----HCCSSCEEEEEECCT
T ss_pred             eccCCCcCCCCCCHHHHHHHhCCCcccccCCcceEEeC--CHHHHHHHHHHHH----hcCCCcEEEEEEcCc
Confidence            221    1234689999999999         899997  4567777666554    33 799999999976

>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*

Probab=99.61  E-value=6.4e-16  Score=164.87  Aligned_cols=120  Identities=18%  Similarity=0.172  Sum_probs=95.1

Q ss_pred             ccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-c-cCc
Q 013928          190 LLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-W-AIG  267 (434)
Q Consensus       190 ~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y-~is  267 (434)
                      ..+.+|+||+++|.|+|+++|            ++++|||++|||+|++.  +++|++|.++++|+++||.||+ | .+.
T Consensus       421 ~~g~~g~~G~~l~~AiGaala------------~~~~vv~i~GDGsf~~~--~~el~ta~~~~l~~~ivv~NN~~~~~~~  486 (568)
T 2c31_A          421 DSGTWGVMGIGMGYCVAAAAV------------TGKPVIAVEGDSAFGFS--GMELETICRYNLPVTVIIMNNGGIYKGN  486 (568)
T ss_dssp             ESTTTTCSSCHHHHHHHHHHH------------HCSCEEEEEEHHHHHTT--GGGHHHHHHTTCCEEEEEEESSBSSCSC
T ss_pred             cCCCCccccccHHHHHHHHhC------------CCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCchhHHHH
Confidence            356679999999999999998            26789999999999986  7899999999999888888886 2 222


Q ss_pred             ccc---cc----cccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCC
Q 013928          268 MSH---LR----ATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR  329 (434)
Q Consensus       268 ~~~---~~----~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~  329 (434)
                      ...   ..    ....+|+.+++++||+++++|+  ++.++.+++++++    +.++|+|||+.|+|..
T Consensus       487 ~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~----~~~~p~liev~~~~~~  549 (568)
T 2c31_A          487 EADPQPGVISCTRLTRGRYDMMMEAFGGKGYVAN--TPAELKAALEEAV----ASGKPCLINAMIDPDA  549 (568)
T ss_dssp             CCCSBTTBCCTTBCCCCCHHHHHHTTTCEEEEES--SHHHHHHHHHHHH----HHTSCEEEEEEBCTTS
T ss_pred             HHHhhcCCcccCcCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEecccc
Confidence            111   00    0245789999999999999997  5667777666665    4578999999998753

>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*

Probab=99.61  E-value=5.4e-16  Score=165.54  Aligned_cols=119  Identities=21%  Similarity=0.159  Sum_probs=94.3

Q ss_pred             cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcC-CccCccc
Q 013928          191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN-LWAIGMS  269 (434)
Q Consensus       191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN-~y~is~~  269 (434)
                      .+++|+||+++|.|+|+++|           .++++|||++|||+++++  +++|++|.++++|+++||.|| +|++...
T Consensus       421 ~~~~g~mG~~l~~A~Gaala-----------~~~~~vv~~~GDG~~~~~--~~eL~ta~~~~l~~~ivv~nN~~~~~~~~  487 (570)
T 2vbf_A          421 QPLWGSIGYTFPAALGSQIA-----------DKESRHLLFIGDGSLQLT--VQELGLSIREKLNPICFIINNDGYTVERE  487 (570)
T ss_dssp             CTTTCCTTTHHHHHHHHHHH-----------CTTSEEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEESSSCHHHHH
T ss_pred             CccchhhhhhHHHHHHHHHh-----------CCCCcEEEEEcchhhhcC--HHHHHHHHHcCCCCEEEEEECCchHHHHH
Confidence            36789999999999999999           678899999999999986  788999999999976666655 6776442


Q ss_pred             cc------ccccCchhhhccccCCCc-----EEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928          270 HL------RATSDPQIYKKGPAFGMP-----GFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR  327 (434)
Q Consensus       270 ~~------~~~~~~d~~~~a~a~Gi~-----~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R  327 (434)
                      ..      .....+|+.+++++||++     +++|++  +.++.++++++   ++..++|+|||+.|+|
T Consensus       488 ~~~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~~~v~~--~~el~~al~~a---~~~~~~p~liev~~~~  551 (570)
T 2vbf_A          488 IHGPTQSYNDIPMWNYSKLPETFGATEDRVVSKIVRT--ENEFVSVMKEA---QADVNRMYWIELVLEK  551 (570)
T ss_dssp             HSCTTCGGGCCCCCCGGGHHHHTTCCTTTEEEEEECB--HHHHHHHHHHH---HHCTTSEEEEEEECCT
T ss_pred             HhccCCCccCCCCCCHHHHHHHcCCCcCCcceEEecC--HHHHHHHHHHH---HhcCCCcEEEEEEcCc
Confidence            21      112347899999999998     889974  55766655543   3567899999999975

>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*

Probab=99.60  E-value=5.1e-16  Score=165.50  Aligned_cols=120  Identities=23%  Similarity=0.380  Sum_probs=95.0

Q ss_pred             cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcC-CccCccc
Q 013928          191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN-LWAIGMS  269 (434)
Q Consensus       191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN-~y~is~~  269 (434)
                      .++.|+||+++|.|+|+++|.|         +++++|||++|||+++++  +++|++|.++++|+++||.|| +|++...
T Consensus       415 ~~g~g~~G~~l~~AiGaa~a~~---------~~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~~~~  483 (563)
T 2uz1_A          415 HGYLGSMGVGFGTALGAQVADL---------EAGRRTILVTGDGSVGYS--IGEFDTLVRKQLPLIVIIMNNQSWGATLH  483 (563)
T ss_dssp             CCTTCCTTTHHHHHHHHHHHHH---------HHTCEEEEEEEHHHHGGG--TTHHHHHHHHTCCCEEEEEECSBCHHHHH
T ss_pred             CCCCccccChHHHHHHHHHHhh---------CCCCeEEEEEccHHHhCC--HHHHHHHHHhCCCeEEEEEeCCcchHHHH
Confidence            3557999999999999999954         157899999999999997  689999999999977666655 6776543


Q ss_pred             cc-------ccc----cCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928          270 HL-------RAT----SDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR  327 (434)
Q Consensus       270 ~~-------~~~----~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R  327 (434)
                      ..       ...    ..+|+.+++++||+++++|+  ++.++.+++++|+    +.++|+|||+.|++
T Consensus       484 ~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~----~~~gp~liev~~~~  546 (563)
T 2uz1_A          484 FQQLAVGPNRVTGTRLENGSYHGVAAAFGADGYHVD--SVESFSAALAQAL----AHNRPACINVAVAL  546 (563)
T ss_dssp             HHHHHTCTTCCCSCBCCCCCHHHHHHHTTCEEEEEC--SHHHHHHHHHHHH----HSSSCEEEEEECCS
T ss_pred             HHHHhcCCCcccCCcCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHH----HCCCCEEEEEEecc
Confidence            21       111    34689999999999999997  4667777666554    46899999999974

>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*

Probab=99.59  E-value=5.2e-16  Score=165.62  Aligned_cols=118  Identities=20%  Similarity=0.246  Sum_probs=93.5

Q ss_pred             cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcC-CccCccc
Q 013928          191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN-LWAIGMS  269 (434)
Q Consensus       191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN-~y~is~~  269 (434)
                      .+++|+||+++|.|+|+|+|           .++++|||++|||+++++  +++|++|.++++|+++||.|| +|++...
T Consensus       418 ~~~~g~mG~~l~~A~G~ala-----------~~~~~vv~i~GDG~~~~~--~~~l~ta~~~~l~~~ivv~nN~~~~~~~~  484 (565)
T 2nxw_A          418 PGYYAGMGFGVPAGIGAQCV-----------SGGKRILTVVGDGAFQMT--GWELGNCRRLGIDPIVILFNNASWEMLRT  484 (565)
T ss_dssp             CTTTCCTTCHHHHHHHHHHH-----------TTTCCEEEEEEHHHHHHH--GGGGGGHHHHTCCCEEEEEECSBCHHHHH
T ss_pred             cCccccccccchHHHHHHHh-----------CCCCcEEEEEechHHHhh--HHHHHHHHHhCCCCEEEEEECCCCcEEee
Confidence            45679999999999999999           578899999999999975  889999999999977666655 5766422


Q ss_pred             cc-----ccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCE-EEEEEEec
Q 013928          270 HL-----RATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPT-LVECETYR  327 (434)
Q Consensus       270 ~~-----~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~-lIev~t~R  327 (434)
                      .+     .....+|+.+++++||+++++|++  +.++.+++++++    +.++|+ |||+.|++
T Consensus       485 ~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~--~~el~~al~~a~----~~~gp~~liev~~~~  542 (565)
T 2nxw_A          485 FQPESAFNDLDDWRFADMAAGMGGDGVRVRT--RAELKAALDKAF----ATRGRFQLIEAMIPR  542 (565)
T ss_dssp             HCTTCGGGBCCCCCHHHHTGGGTSEEEEECB--HHHHHHHHHHHH----HCCSSCEEEEEECCT
T ss_pred             ecccCCCCcCCCCCHHHHHHHcCCCEEEeCC--HHHHHHHHHHHH----hcCCCeEEEEEEccc
Confidence            11     122457899999999999999984  567766665554    457888 99999975

>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*

Probab=99.58  E-value=2.8e-15  Score=159.79  Aligned_cols=119  Identities=21%  Similarity=0.236  Sum_probs=94.7

Q ss_pred             cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-c-cCcc
Q 013928          191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-W-AIGM  268 (434)
Q Consensus       191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y-~is~  268 (434)
                      .+.+|+||+++|.|+|+++|            ++++|||++|||+|+++  .++|++|.++++|+++||.||+ | ++. 
T Consensus       417 ~g~~g~~G~~l~~AiGaa~a------------~~~~vv~i~GDGsf~~~--~~el~ta~~~~l~~~ivv~NN~~~~~~~-  481 (564)
T 2q28_A          417 CGTWGVMGIGMGYAIGASVT------------SGSPVVAIEGDSAFGFS--GMEIETICRYNLPVTIVIFNNGGIYRGD-  481 (564)
T ss_dssp             STTTTCTTCHHHHHHHHHHH------------HCSCEEEEEEHHHHHTT--GGGHHHHHHTTCCEEEEEEECSBSSCSC-
T ss_pred             CCCCCcccchHHHHHHHhhc------------CCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCchhHHHH-
Confidence            56679999999999999998            26789999999999886  6899999999999888888876 3 332 


Q ss_pred             ccc-------c---cccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCC
Q 013928          269 SHL-------R---ATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRG  330 (434)
Q Consensus       269 ~~~-------~---~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~g  330 (434)
                      ...       .   ....+|+.+++++||+++++|+  ++.++.+++++|+    +.++|+|||+.|+|...
T Consensus       482 ~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~----~~~~p~liev~~~~~~~  547 (564)
T 2q28_A          482 GVDLSGAGAPSPTDLLHHARYDKLMDAFRGVGYNVT--TTDELRHALTTGI----QSRKPTIINVVIDPAAG  547 (564)
T ss_dssp             CCCTTSSCCCCTTBCCTTCCGGGGGGGGTCEEEEEC--SHHHHHHHHHHHH----HHTSCEEEEEEBCTTSS
T ss_pred             HHHHhccCCccccccCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEeccccC
Confidence            111       0   1124789999999999999997  4667777666665    45789999999987543

>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*

Probab=99.57  E-value=2.4e-15  Score=165.40  Aligned_cols=196  Identities=15%  Similarity=0.176  Sum_probs=143.8

Q ss_pred             cccccCCCChHHHHHHHHHhcCC--CCEEEccCcchHHHHH------cC--------CC--HHHH---HHHHhcCCCCCc
Q 013928          116 FGFVHLYNGQEAVSTGFIKLLKK--EDSVVSTYRDHVHALS------KG--------VP--ARAV---MSELFGKATGCC  174 (434)
Q Consensus       116 ~G~~h~~~GqEa~~~g~~~~L~~--~D~v~~~yR~~~~~La------~G--------~~--~~~i---~~el~g~~~g~~  174 (434)
                      .|+...+.|.--+.+.+...++.  .|.+|-.--||+..+.      .|        ++  ++++   |+++ ++..+  
T Consensus        82 sGH~G~~~g~a~iy~~~~~~~~~~~rDr~fvls~GHg~p~lYa~l~l~G~~~~~~p~~s~d~e~Lk~lfrqf-s~~gg--  158 (845)
T 3ahc_A           82 VGHWGTTPGLNFLLAHINRLIADHQQNTVFIMGPGHGGPAGTSQSYVDGTYTEYYPNITKDEAGLQKFFRQF-SYPGG--  158 (845)
T ss_dssp             CSCCTTHHHHHHHHHHHHHHHHHHTBCBCCEESSGGGHHHHHHHHHHHTHHHHHCTTSCSSHHHHHHHHHHB-TCTTS--
T ss_pred             CCCCCCCHHHHHHHHHHHHhcccCCCceEEEECcCcHHHHHHHHHHHcCCCccccccccccHHHHHHHHHhc-cCCCC--
Confidence            45554456665554444444432  4553222236664321      33        23  4555   7776 44322  


Q ss_pred             cCCCCCcccccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccch---HHHHHHHHHHc
Q 013928          175 RGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQ---FFECLNMAALW  251 (434)
Q Consensus       175 ~G~ggs~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~---~~EaLn~A~~~  251 (434)
                          -+.|......++...+|+||++++.|+|+|+.           +++..|+|++|||+.++|.   .||+.+++..+
T Consensus       159 ----~pgHp~~~tpGve~~tG~LGqGls~AvG~A~~-----------~~~~~v~~~~GDGe~e~GsLAg~wea~~~~~~~  223 (845)
T 3ahc_A          159 ----IPSHFAPETPGSIHEGGELGYALSHAYGAVMN-----------NPSLFVPCIIGDGEAETGPLATGWQSNKLVNPR  223 (845)
T ss_dssp             ----BCSSCCTTSTTCSCCCSSTTCHHHHHHHHHTT-----------CTTCEEEEEEETTGGGSHHHHHHGGGGGSCCTT
T ss_pred             ----CCCCCCCCCCCeecCCCCccchHhHHhhhhhc-----------CCCCeEEEEECCCchhhhcchhhhHHhhhhhhh
Confidence                12344333457888899999999999999975           6788999999999999999   89999999999


Q ss_pred             CCC-eEEEEEcCCccCccccccc-ccCchhhhccccCCCcEE-EEeC-C--CHHHHHHHHHHHHHH-----------HHc
Q 013928          252 KLP-IVFVVENNLWAIGMSHLRA-TSDPQIYKKGPAFGMPGF-HVDG-M--DVLKVREVAKEAIER-----------ARR  314 (434)
Q Consensus       252 ~LP-vI~VV~NN~y~is~~~~~~-~~~~d~~~~a~a~Gi~~~-~VdG-~--D~~av~~a~~~Al~~-----------ar~  314 (434)
                      ++. +|.|+++|+|.|+.++... .+..++.+++++|||.++ .||| +  |+.++..++.+|++.           ++.
T Consensus       224 ~l~nl~~i~D~N~~~i~g~t~l~~~~~e~l~~rf~a~Gw~v~~~vdG~~~~D~~~i~~a~~~al~~~~~~i~~i~~~A~~  303 (845)
T 3ahc_A          224 TDGIVLPILHLNGYKIANPTILARISDEELHDFFRGMGYHPYEFVAGFDNEDHMSIHRRFAELFETIFDEICDIKAAAQT  303 (845)
T ss_dssp             TSCEEEEEEEECSBSSSSBCHHHHSCHHHHHHHHHHTTEEEEEEECSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cCCCEEEEEECCCCcCCCCccccccCcHHHHHHHHHCCCEEeEEeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            998 8899999999999887543 245789999999999999 9999 8  999999888766633           343


Q ss_pred             --cCCC--EEEEEEEecCC
Q 013928          315 --GEGP--TLVECETYRFR  329 (434)
Q Consensus       315 --~~gP--~lIev~t~R~~  329 (434)
                        .++|  ++|.++|.+++
T Consensus       304 ~~~~kP~w~~Ii~rT~kG~  322 (845)
T 3ahc_A          304 DDMTRPFYPMLIFRTPKGW  322 (845)
T ss_dssp             CCSSCCCEEEEEEECCTTT
T ss_pred             ccCCCCCCeEEEEECcccC
Confidence              3689  99999999999

>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*

Probab=99.54  E-value=2.4e-15  Score=160.16  Aligned_cols=151  Identities=15%  Similarity=0.129  Sum_probs=103.8

Q ss_pred             CCCHHHHHHHHhcCCCCCc---cCCCCCccc---c---cCCCccc---CCcccccccchhhHHHHHHHHHHHhhhhhcCC
Q 013928          156 GVPARAVMSELFGKATGCC---RGQGGSMHM---F---SKEHNLL---GGFAFIGEGIPVATGAAFTSKYRREVLKEADC  223 (434)
Q Consensus       156 G~~~~~i~~el~g~~~g~~---~G~ggs~h~---~---~~~~~~~---~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~  223 (434)
                      .+++..++.++....++..   .|.+.....   +   .....+.   +..|++|+ +|.|+|+++|            +
T Consensus       366 ~~~~~~~~~~l~~~l~~~~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~G~-l~~A~Gaa~a------------~  432 (556)
T 3hww_A          366 AFGEAQLAHRICDYLPEQGQLFVGNSLVVRLIDALSQLPAGYPVYSNRGASGIDGL-LSTAAGVQRA------------S  432 (556)
T ss_dssp             SSSHHHHHHTGGGTCCTTCEEEECSSHHHHHHHHHCCCCTTCCEEECCSSCCSSSH-HHHHHHHHHH------------H
T ss_pred             CcCHHHHHHHHHHhCCCCCeEEEeCCcHHHHHHHhccCCCCceEEecCcccccccH-HHHHHHHHhc------------C
Confidence            4778888888877766432   222211101   1   1122222   45677777 9999999998            2


Q ss_pred             CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCcccc-------c---ccccCchhhhccccCCCcEEE
Q 013928          224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSH-------L---RATSDPQIYKKGPAFGMPGFH  292 (434)
Q Consensus       224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~~-------~---~~~~~~d~~~~a~a~Gi~~~~  292 (434)
                      +++|||++|||+|+++  .++|++|.++++|+++||.||+ |++....       .   .....+|+.+++++||+++++
T Consensus       433 ~~~vv~i~GDGsf~~~--~~eL~ta~~~~lpv~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~  510 (556)
T 3hww_A          433 GKPTLAIVGDLSALYD--LNALALLRQVSAPLVLIVVNNNGGQIFSLLPTPQSERERFYLMPQNVHFEHAAAMFELKYHR  510 (556)
T ss_dssp             CCCEEEEEEHHHHHHT--GGGHHHHTTCSSCEEEEEEESCC-----------------CCCCCCCCSHHHHHHTTCEEEC
T ss_pred             CCcEEEEEccHHhhhc--chhhHhhcccCCCcEEEEEECCCCCcccCCCCcchhHHHhccCCCCCCHHHHHHHcCCcEEe
Confidence            6789999999999886  6789999999999888888776 4543211       0   011357999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928          293 VDGMDVLKVREVAKEAIERARRGEGPTLVECETYR  327 (434)
Q Consensus       293 VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R  327 (434)
                      |++.  .++.+    +++++++.++|+|||+.|++
T Consensus       511 v~~~--~~l~~----al~~a~~~~gp~liev~~~~  539 (556)
T 3hww_A          511 PQNW--QELET----AFADAWRTPTTTVIEMVVND  539 (556)
T ss_dssp             CSSH--HHHHH----HHHHHTTSSSEEEEEEECCS
T ss_pred             cCCH--HHHHH----HHHHHHhCCCCEEEEEECCc
Confidence            9754  45555    55556677899999999864

>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}

Probab=99.53  E-value=1.4e-15  Score=163.53  Aligned_cols=116  Identities=16%  Similarity=0.067  Sum_probs=89.9

Q ss_pred             CCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcC-CccCcccc
Q 013928          192 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN-LWAIGMSH  270 (434)
Q Consensus       192 ~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN-~y~is~~~  270 (434)
                      .+.+.||+++|.|+|+++|            ++++|||++|||+|+++  .++|++|.++++|+++||.|| +|++....
T Consensus       452 ~G~~~ig~~l~~AiGaala------------~~~~vv~i~GDGsf~~~--~~eL~ta~~~~lp~~ivv~NN~~~~i~~~~  517 (604)
T 2x7j_A          452 RGANGIDGVVSSAMGVCEG------------TKAPVTLVIGDLSFYHD--LNGLLAAKKLGIPLTVILVNNDGGGIFSFL  517 (604)
T ss_dssp             TTTCCSSSHHHHHHHHHHH------------HTSCEEEEEEHHHHHHT--GGGGHHHHHHCCCEEEEEEECSSCGGGGGS
T ss_pred             CCcCCcCcHHHHHHHHHhc------------CCCcEEEEEccHHHHhH--HHHHHHhhhcCCCeEEEEEeCCCCcccccC
Confidence            4467899999999999998            25789999999999987  678999999999977766655 67763321


Q ss_pred             -ccc-----------ccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928          271 -LRA-----------TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR  327 (434)
Q Consensus       271 -~~~-----------~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R  327 (434)
                       ..+           ...+|+.+++++||+++++|++  +.++.++++    ++...++|+|||+.|+|
T Consensus       518 ~~~q~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~--~~el~~al~----~a~~~~gp~liev~~~~  580 (604)
T 2x7j_A          518 PQASEKTHFEDLFGTPTGLDFKHAAALYGGTYSCPAS--WDEFKTAYA----PQADKPGLHLIEIKTDR  580 (604)
T ss_dssp             GGGSCHHHHHHHTTCCCCCCTHHHHHHTTCEEECCSS--HHHHHHHCC----CCCSSCCEEEEEEECCH
T ss_pred             CCCccchhhHhhccCCCCCCHHHHHHHcCCeEEecCC--HHHHHHHHH----HHHhCCCCEEEEEECCc
Confidence             111           1346899999999999999984  556666444    44456899999999864

>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}

Probab=99.47  E-value=1.6e-14  Score=154.44  Aligned_cols=111  Identities=19%  Similarity=0.194  Sum_probs=78.0

Q ss_pred             ccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcC-CccCcccc-ccc-
Q 013928          197 IGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN-LWAIGMSH-LRA-  273 (434)
Q Consensus       197 lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN-~y~is~~~-~~~-  273 (434)
                      +|+++|.|+|+|+             ++++|||++|||+|+++  .++|++|.++++|+++||.|| +|++.... ..+ 
T Consensus       438 ~~g~l~~AiGaa~-------------~~~~vv~i~GDGsf~~~--~~eL~ta~~~~l~~~ivv~NN~~~g~~~~~~~~~~  502 (578)
T 3lq1_A          438 IDGVVSSALGASV-------------VFQPMFLLIGDLSFYHD--MNGLLMAKKYKMNLTIVIVNNDGGGIFSFLPQANE  502 (578)
T ss_dssp             SSSHHHHHHHHTT-------------TSSSEEEEEEHHHHHHT--GGGGHHHHHTTCCEEEEEECCC-------------
T ss_pred             cccHHHHHHHHhc-------------CCCCEEEEEchHHHHhh--HHHHHhhccCCCCeEEEEEECCcCccccccccccc
Confidence            3446899999863             37789999999999986  788999999999988888877 46653311 111 


Q ss_pred             ----------ccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecC
Q 013928          274 ----------TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF  328 (434)
Q Consensus       274 ----------~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~  328 (434)
                                ...+|+.+++++||+++++|+  +..++.+++    +++++.++|+|||+.|.+.
T Consensus       503 ~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al----~~a~~~~gp~liev~~~~~  561 (578)
T 3lq1_A          503 PKYFESLFGTSTELDFRFAAAFYDADYHEAK--SVDELEEAI----DKASYHKGLDIIEVKTNRH  561 (578)
T ss_dssp             ------------CCCTHHHHHHTTCEEEECC--SHHHHHHHH----HHHTTSSSEEEEEEC----
T ss_pred             cchhhhhccCCCCCCHHHHHHHcCCceEecC--CHHHHHHHH----HHHHhCCCCEEEEEECCcc
Confidence                      124689999999999999997  455666544    4555678999999988753

>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*

Probab=99.09  E-value=3.2e-10  Score=130.47  Aligned_cols=99  Identities=17%  Similarity=0.122  Sum_probs=76.3

Q ss_pred             CceEEEEeCcc-ccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCccccccc----------------ccCchhhhcccc
Q 013928          224 DHVTLAFFGDG-TCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLRA----------------TSDPQIYKKGPA  285 (434)
Q Consensus       224 d~~vv~~~GDG-a~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~~~~~----------------~~~~d~~~~a~a  285 (434)
                      ++.|||+.||| ++++|  .++|.+|..+++||++||.||+ |++.......                ...+|+.+++++
T Consensus       953 ~~~Vv~i~GDG~~~~mg--~~eL~ta~~~~~~v~iiVlnN~~yg~tg~Q~s~~t~~~~~t~~~~~g~~~~~~D~~~iA~a 1030 (1231)
T 2c42_A          953 KKSVWIFGGDGWAYDIG--YGGLDHVLASGEDVNVFVMDTEVYSNTGGQSSKATPTGAVAKFAAAGKRTGKKDLARMVMT 1030 (1231)
T ss_dssp             CCEEEEEEEHHHHHTTT--HHHHHHHHHTTCSCEEEEEECSSBTTTTCBCCTTSCTTCCBBTBTTCCSSCCCCHHHHHHT
T ss_pred             CCcEEEEeCcHHHHHcc--hHHHHHHHHhCCCeEEEEEECHHHHhHHhhhccCCCCCceeeecccCCCCCchhHHHHHHH
Confidence            57899999999 88999  8899999999999888888876 4443211100                012689999999


Q ss_pred             CCCcEEEEe-C-CCHHHHHHHHHHHHHHHHccCCCEEEEEEEecC
Q 013928          286 FGMPGFHVD-G-MDVLKVREVAKEAIERARRGEGPTLVECETYRF  328 (434)
Q Consensus       286 ~Gi~~~~Vd-G-~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~  328 (434)
                      ||++++++. - .++.++.+++++|+    +.+||+||++.+...
T Consensus      1031 ~G~~~va~~~v~~~~~~l~~al~eAl----~~~GP~lI~v~~~c~ 1071 (1231)
T 2c42_A         1031 YGYVYVATVSMGYSKQQFLKVLKEAE----SFPGPSLVIAYATCI 1071 (1231)
T ss_dssp             TSSSEEEEECTTTCHHHHHHHHHHHH----HSSSCEEEEEECCCG
T ss_pred             CCCCEEEEEeccCCHHHHHHHHHHHH----hcCCCEEEEEeecCc
Confidence            999999643 4 48889888777776    468999999987544

>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*

Probab=93.13  E-value=0.57  Score=49.58  Aligned_cols=95  Identities=19%  Similarity=0.099  Sum_probs=65.6

Q ss_pred             CCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCcc-CcccccccccCchhhhccccCCCcEEEEeCCCHHHH
Q 013928          223 CDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA-IGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKV  301 (434)
Q Consensus       223 ~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~-is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av  301 (434)
                      .-.+++|..|=|+++.   .-++..|..-+.|+|+|.-+-... ++.....|.  .|... ++.+--...++.  ++.++
T Consensus        68 ~p~v~~~TsGpG~~N~---~~gv~~A~~~~vPll~itg~~~~~~~~~~~~~Q~--~d~~~-~~~~tk~~~~v~--~~~~~  139 (589)
T 2pgn_A           68 RSAAVGAWHCVGNLLL---HAAMQEARTGRIPAVHIGLNSDGRLAGRSEAAQQ--VPWQS-FTPIARSTQRVE--RLDKV  139 (589)
T ss_dssp             SCCEEEEEEGGGGGGC---HHHHHHHHHTTCCEEEEEEESCGGGTTCTTCSSC--CCGGG-GTTTSSEEEECC--SGGGH
T ss_pred             CCEEEEEecCchHHHH---HHHHHHHHhcCCCEEEEecCCcccccCCCCcccc--cChhh-ccccEEEEeecC--CHHHH
Confidence            3457888889998875   568999999999999998764322 111101222  24444 555544455554  66788


Q ss_pred             HHHHHHHHHHHHccC-CCEEEEEEE
Q 013928          302 REVAKEAIERARRGE-GPTLVECET  325 (434)
Q Consensus       302 ~~a~~~Al~~ar~~~-gP~lIev~t  325 (434)
                      ...+.+|+..+..++ ||+.|++-.
T Consensus       140 ~~~i~~A~~~A~~~~~GPV~l~iP~  164 (589)
T 2pgn_A          140 GEAIHEAFRVAEGHPAGPAYVDIPF  164 (589)
T ss_dssp             HHHHHHHHHHHTSSSCCEEEEEEET
T ss_pred             HHHHHHHHHHHhcCCCccEEEEeCH
Confidence            889999999888776 999999854

>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*

Probab=92.89  E-value=0.37  Score=50.70  Aligned_cols=97  Identities=16%  Similarity=0.121  Sum_probs=66.1

Q ss_pred             CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHH
Q 013928          224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE  303 (434)
Q Consensus       224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~  303 (434)
                      -.+++|..|=|+++.   .-++..|..-+.|+|+|+-+-....-.....|.. .|...+++.+-....++.  +++++..
T Consensus        67 p~v~~~TsGpG~~N~---~~~l~~A~~~~~Pll~itg~~~~~~~~~~~~Q~~-~d~~~~~~~~tk~~~~v~--~~~~~~~  140 (563)
T 2uz1_A           67 LGVALVTAGGGFTNA---VTPIANAWLDRTPVLFLTGSGALRDDETNTLQAG-IDQVAMAAPITKWAHRVM--ATEHIPR  140 (563)
T ss_dssp             CEEEEECTTHHHHTT---HHHHHHHHHHTCCEEEEEEECCGGGTTSCCTTCC-CCHHHHHGGGCSEEEECC--CGGGHHH
T ss_pred             CEEEEEccCccHHHH---HHHHHHHHhcCCCEEEEeCCCCcccCCchhhhhh-ccHHHHhhhhhceEEEcC--CHHHHHH
Confidence            345666778888775   5578889999999999987654221111112220 356666666665566665  6668888


Q ss_pred             HHHHHHHHHHccC-CCEEEEEEEe
Q 013928          304 VAKEAIERARRGE-GPTLVECETY  326 (434)
Q Consensus       304 a~~~Al~~ar~~~-gP~lIev~t~  326 (434)
                      .+.+|+..+..++ ||+.|++-..
T Consensus       141 ~l~~A~~~a~~~~~GPV~l~iP~d  164 (563)
T 2uz1_A          141 LVMQAIRAALSAPRGPVLLDLPWD  164 (563)
T ss_dssp             HHHHHHHHHHSSSCCCEEEEEEHH
T ss_pred             HHHHHHHHhcCCCCceEEEEeCHH
Confidence            9999999998875 9999998543

>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*

Probab=92.77  E-value=0.34  Score=51.33  Aligned_cols=107  Identities=23%  Similarity=0.217  Sum_probs=71.4

Q ss_pred             hhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhh
Q 013928          202 PVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYK  281 (434)
Q Consensus       202 p~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~  281 (434)
                      -+|.|.|.+.          +.-.+++|..|=|+++.   .-++..|..-+.|+|+|+-+-....-.....|  ..|...
T Consensus        64 ~~A~Gyar~t----------g~p~v~~~TsGpG~~N~---~~gv~~A~~~~vPll~itg~~~~~~~g~~~~Q--~~d~~~  128 (590)
T 1ybh_A           64 FAAEGYARSS----------GKPGICIATSGPGATNL---VSGLADALLDSVPLVAITGQVPRRMIGTDAFQ--ETPIVE  128 (590)
T ss_dssp             HHHHHHHHHH----------SSCEEEEECTTHHHHTT---HHHHHHHHHHTCCEEEEEEECCGGGTTTTCTT--CCCHHH
T ss_pred             HHHHHHHHHH----------CCCEEEEeccCchHHHH---HHHHHHHHhhCCCEEEEeCcCCccccCCCccc--ccCHHH
Confidence            3466666552          33456777778887765   56888999999999998865432111111112  235566


Q ss_pred             ccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccC-CCEEEEEEE
Q 013928          282 KGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGE-GPTLVECET  325 (434)
Q Consensus       282 ~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~-gP~lIev~t  325 (434)
                      +++.+--...+|.  +++++...+++|++.+..++ ||+.|++-.
T Consensus       129 ~~~~~~k~~~~v~--~~~~i~~~l~~A~~~a~~~~~GPV~l~iP~  171 (590)
T 1ybh_A          129 VTRSITKHNYLVM--DVEDIPRIIEEAFFLATSGRPGPVLVDVPK  171 (590)
T ss_dssp             HHGGGSSEEEECC--CGGGHHHHHHHHHHHHHSSSCCEEEEEEEH
T ss_pred             HHHHHhCeEEecC--CHHHHHHHHHHHHHHHhhCCCceEEEEeCc
Confidence            6666655556664  66789999999999888764 899999854

>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*

Probab=92.59  E-value=0.33  Score=51.21  Aligned_cols=96  Identities=10%  Similarity=0.099  Sum_probs=66.0

Q ss_pred             CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCccc-ccccccCchhhhccccCCCcEEEEeCCCHHHHH
Q 013928          224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMS-HLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVR  302 (434)
Q Consensus       224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~-~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~  302 (434)
                      -.+++|..|=|.++.   .-++..|..-+.|+|+|.-+.....-.. ...|  ..|...+++.+--...++.  ++.++.
T Consensus        74 p~v~~~TsGpG~~N~---~~~v~~A~~~~~Pll~itg~~~~~~~~~~~~~Q--~~d~~~~~~~~~k~~~~v~--~~~~~~  146 (573)
T 2iht_A           74 PQACWATLGPGMTNL---STGIATSVLDRSPVIALAAQSESHDIFPNDTHQ--CLDSVAIVAPMSKYAVELQ--RPHEIT  146 (573)
T ss_dssp             CEEEEECTTHHHHHH---HHHHHHHHHHTCCEEEEEEESCGGGCCTTTSTT--CCCHHHHHGGGSSEEEECC--SGGGHH
T ss_pred             CEEEEEccCchHHHH---HHHHHHHHhhCCCEEEEcccCcccccCCcCccc--cCCHHHHHHhHhhEEEEcC--CHHHHH
Confidence            345667778887764   5578889999999999987654222111 1122  2356666666655566664  566888


Q ss_pred             HHHHHHHHHHHccC-CCEEEEEEEe
Q 013928          303 EVAKEAIERARRGE-GPTLVECETY  326 (434)
Q Consensus       303 ~a~~~Al~~ar~~~-gP~lIev~t~  326 (434)
                      ..+.+|++.+..++ ||+.|++-..
T Consensus       147 ~~i~~A~~~A~~~~~GPV~l~iP~d  171 (573)
T 2iht_A          147 DLVDSAVNAAMTEPVGPSFISLPVD  171 (573)
T ss_dssp             HHHHHHHHHHTBSSCCCEEEEEEHH
T ss_pred             HHHHHHHHHHhcCCCceEEEEecch
Confidence            89999999888875 9999999654

>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*

Probab=92.58  E-value=0.35  Score=50.97  Aligned_cols=96  Identities=18%  Similarity=0.092  Sum_probs=64.8

Q ss_pred             CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHH
Q 013928          224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE  303 (434)
Q Consensus       224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~  303 (434)
                      -.+++|..|=|+++.   .-++..|..-+.|+|+|+-+-....-.....|  ..|...+++.+-....+|.  ++.++..
T Consensus        74 p~v~~~TsGpG~~N~---~~~l~~A~~~~vPll~itg~~~~~~~~~~~~Q--~~d~~~~~~~~tk~~~~v~--~~~~~~~  146 (566)
T 1ozh_A           74 AGVALVTSGPGCSNL---ITGMATANSEGDPVVALGGAVKRADKAKQVHQ--SMDTVAMFSPVTKYAIEVT--APDALAE  146 (566)
T ss_dssp             CEEEEECSTHHHHTT---HHHHHHHHHHTCCEEEEEEECCTTTC--------CCCHHHHHGGGCSEEEECC--SGGGHHH
T ss_pred             CEEEEEccChHHHHH---HHHHHHHHhcCCCEEEEeCCCccccCCCCccc--ccCHHHHHHHHhheEEEcC--CHHHHHH
Confidence            345666678888875   56788888999999999876532211111122  2356666776666666665  5668888


Q ss_pred             HHHHHHHHHHccC-CCEEEEEEEe
Q 013928          304 VAKEAIERARRGE-GPTLVECETY  326 (434)
Q Consensus       304 a~~~Al~~ar~~~-gP~lIev~t~  326 (434)
                      .+++|+..+..++ ||+.|++-..
T Consensus       147 ~i~~A~~~A~~~r~GPV~l~iP~d  170 (566)
T 1ozh_A          147 VVSNAFRAAEQGRPGSAFVSLPQD  170 (566)
T ss_dssp             HHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred             HHHHHHHHHhcCCCCeEEEEeChh
Confidence            8999999888874 9999998543

>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*

Probab=92.18  E-value=0.51  Score=49.47  Aligned_cols=94  Identities=14%  Similarity=0.024  Sum_probs=65.0

Q ss_pred             CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCc-cCcccccccccCchhhhccccCCCcEEEEeCCCHHHHH
Q 013928          224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLW-AIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVR  302 (434)
Q Consensus       224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y-~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~  302 (434)
                      -.+++|..|=|+++.   .-++..|..-+.|+|+|.-+-.. .++. ...|  ..|...+++.+--...++.  +++++.
T Consensus        67 ~~v~~~TsGpG~~N~---~~gi~~A~~~~vPvl~itg~~~~~~~~~-~~~Q--~~d~~~~~~~~tk~~~~v~--~~~~~~  138 (549)
T 3eya_A           67 LAVCAGSCGPGNLHL---INGLFDCHRNHVPVLAIAAHIPSSEIGS-GYFQ--ETHPQELFRECSHYCELVS--SPEQIP  138 (549)
T ss_dssp             CEEEEECTTHHHHTT---HHHHHHHHHTTCCEEEEEEESCGGGTTS-CCTT--CCCHHHHTSTTCSEEEECC--SGGGHH
T ss_pred             CEEEEeCCCCcHhhh---HHHHHHHHhhCCCEEEEeCCCchhhcCC-CCCC--ccCHHHHHhhhhheEEEeC--CHHHHH
Confidence            456677778888875   56889999999999998865321 1111 1112  2355666666655556664  566788


Q ss_pred             HHHHHHHHHHHccCCCEEEEEEE
Q 013928          303 EVAKEAIERARRGEGPTLVECET  325 (434)
Q Consensus       303 ~a~~~Al~~ar~~~gP~lIev~t  325 (434)
                      ..+.+|+..+....||+.|++-.
T Consensus       139 ~~i~~A~~~A~~~~GPV~l~iP~  161 (549)
T 3eya_A          139 QVLAIAMRKAVLNRGVSVVVLPG  161 (549)
T ss_dssp             HHHHHHHHHHHHTTSEEEEEEEH
T ss_pred             HHHHHHHHHHhhCCCCEEEEeCh
Confidence            88889998888888999999853

>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*

Probab=92.03  E-value=0.69  Score=48.63  Aligned_cols=98  Identities=13%  Similarity=0.118  Sum_probs=66.3

Q ss_pred             CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccC-cccc--ccc---ccCchhhhccccCCCcEEEEeCCC
Q 013928          224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAI-GMSH--LRA---TSDPQIYKKGPAFGMPGFHVDGMD  297 (434)
Q Consensus       224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~i-s~~~--~~~---~~~~d~~~~a~a~Gi~~~~VdG~D  297 (434)
                      ..++++..|=|+++.   .-++..|..-+.|+|+|+-+-.... +...  ...   ....|...+++.+-....+|.  +
T Consensus        66 ~~v~~~TsGpG~~N~---~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~tk~~~~v~--~  140 (568)
T 2wvg_A           66 AAAAVVTYSVGALSA---FDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLEMAKNITAAAEAIY--T  140 (568)
T ss_dssp             CEEEEECTTTTHHHH---HHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCCHHHHHHTTSCSCEEEEC--S
T ss_pred             CeEEEEeCCCCHHHH---HHHHHHHhhhCCCEEEEeCCCChhHhccCcceeeeccccchHHHHHHHHhhEeEEEEeC--C
Confidence            456677778887764   5578889999999999987653221 1110  000   011256677777766677775  5


Q ss_pred             HHHHHHHHHHHHHHHHccCCCEEEEEEEe
Q 013928          298 VLKVREVAKEAIERARRGEGPTLVECETY  326 (434)
Q Consensus       298 ~~av~~a~~~Al~~ar~~~gP~lIev~t~  326 (434)
                      ++++...+.+|++.+..+.||+.|++-..
T Consensus       141 ~~~~~~~l~~A~~~A~~~~GPV~l~iP~d  169 (568)
T 2wvg_A          141 PEEAPAKIDHVIKTALREKKPVYLEIACN  169 (568)
T ss_dssp             GGGHHHHHHHHHHHHHHHTCCEEEEEEGG
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEechh
Confidence            56777888888888888889999999654

>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}

Probab=91.99  E-value=0.18  Score=51.07  Aligned_cols=109  Identities=14%  Similarity=0.117  Sum_probs=61.0

Q ss_pred             cchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCch-
Q 013928          200 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQ-  278 (434)
Q Consensus       200 glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d-  278 (434)
                      .+.+|+|++++           + .+.++...|.|-..+   .+.|..++...+|+|+++-+.. +.++....+....| 
T Consensus        76 a~~~a~Gaa~a-----------G-~r~~~~ts~~G~~~~---~d~l~~aa~~~~P~Vi~~~~~~-~~~~g~~~~~~~sd~  139 (395)
T 1yd7_A           76 SIAAAIGASWA-----------G-AKAMTATSGPGFSLM---QENIGYAVMTETPVVIVDVQRS-GPSTGQPTLPAQGDI  139 (395)
T ss_dssp             HHHHHHHHHHT-----------T-CCEEEEEETTHHHHH---TTTCC----CCCCEEEEEEC------------------
T ss_pred             HHHHHHHHHHh-----------C-CcEEEEeCchHHHHH---HHHHHHHHhcCCCEEEEEeeCC-CCCCCCCcccchhHH
Confidence            45567777776           2 456777889987653   4556667788999888887664 22211011110111 


Q ss_pred             hhhcccc---CCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEe
Q 013928          279 IYKKGPA---FGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETY  326 (434)
Q Consensus       279 ~~~~a~a---~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~  326 (434)
                      +..+...   +|++++..  .++.++.+-+..|++.+.+.+.|+++....+
T Consensus       140 ~~~~~~~~g~~g~~vl~p--~~~qea~~l~~~A~~lA~~~~~PVi~~~~~~  188 (395)
T 1yd7_A          140 MQAIWGTHGDHSLIVLSP--STVQEAFDFTIRAFNLSEKYRTPVILLTDAE  188 (395)
T ss_dssp             ---------CCCCEEECC--CSHHHHHHHHHHHHHHHHHHTSEEEEEECHH
T ss_pred             HHHHhccCCCcceEEEeC--CCHHHHHHHHHHHHHHHHHHCCCEEEEcchh
Confidence            1222222   35665554  4788999999999998888889999987654

>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*

Probab=91.48  E-value=0.64  Score=50.32  Aligned_cols=106  Identities=22%  Similarity=0.138  Sum_probs=70.8

Q ss_pred             hhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhh
Q 013928          202 PVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYK  281 (434)
Q Consensus       202 p~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~  281 (434)
                      -+|.|.|.+.          +.-.+++|..|=|+++.   .-++..|..-++|+|+|+-+-....-.....|  ..|...
T Consensus       134 ~aAdGyAr~t----------Gkpgvv~~TsGpG~~N~---~~gia~A~~d~vPllvItG~~~~~~~g~~a~Q--~~Dq~~  198 (677)
T 1t9b_A          134 HMAEGYARAS----------GKPGVVLVTSGPGATNV---VTPMADAFADGIPMVVFTGQVPTSAIGTDAFQ--EADVVG  198 (677)
T ss_dssp             HHHHHHHHHH----------SSCEEEEECSTHHHHTT---HHHHHHHHHHTCCEEEEEEECCTTTTTSCCTT--CCCHHH
T ss_pred             HHHHHHHHHH----------CCCEEEEECCChHHHHH---HHHHHHHHHcCCCEEEEeCCCChhhcCCCCcc--ccCHHH
Confidence            3466666552          33456777788888874   55788888999999999865432111111112  235555


Q ss_pred             ccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHcc-CCCEEEEEE
Q 013928          282 KGPAFGMPGFHVDGMDVLKVREVAKEAIERARRG-EGPTLVECE  324 (434)
Q Consensus       282 ~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~-~gP~lIev~  324 (434)
                      +++.+--...+|.  ++.++...+.+|++.+..+ .||+.|++-
T Consensus       199 i~~~~tk~~~~v~--~~~~i~~~i~~A~~~A~~grpGPV~l~lP  240 (677)
T 1t9b_A          199 ISRSCTKWNVMVK--SVEELPLRINEAFEIATSGRPGPVLVDLP  240 (677)
T ss_dssp             HTGGGSSEEEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred             HhhhheeEEEEcC--CHHHHHHHHHHHHHHHhhCCCceEEEEcC
Confidence            6665555555664  6678999999999988876 599999996

>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*

Probab=91.11  E-value=0.87  Score=48.37  Aligned_cols=93  Identities=16%  Similarity=0.080  Sum_probs=62.0

Q ss_pred             CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHH
Q 013928          224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVR  302 (434)
Q Consensus       224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~  302 (434)
                      -.+++|..|=|+++.   .-++..|..-+.|+|+|+-+-. ..++.. ..|  ..|...+++.+-....+|.  ++.++.
T Consensus        76 ~gv~~~TsGpG~~N~---~~gia~A~~~~vPvl~itG~~~~~~~~~~-~~Q--~~d~~~~~~~~tk~~~~v~--~~~~~~  147 (603)
T 4feg_A           76 IGVCFGSAGPGGTHL---MNGLYDAREDHVPVLALIGQFGTTGMNMD-TFQ--EMNENPIYADVADYNVTAV--NAATLP  147 (603)
T ss_dssp             CEEEEECTTHHHHTT---HHHHHHHHHTTCCEEEEEEECCTTTTTSC-CTT--CCCCGGGGTTTCSEEEECC--CSTTHH
T ss_pred             ceEEEecCCchHHHH---HHHHHHHHHcCCCEEEEecCCcccccCCC-ccc--cccHHHHhhhhceEEEEcC--CHHHHH
Confidence            346667778888875   5688899999999999885432 111111 112  2345566666655566665  344677


Q ss_pred             HHHHHHHHHHHccCCCEEEEEE
Q 013928          303 EVAKEAIERARRGEGPTLVECE  324 (434)
Q Consensus       303 ~a~~~Al~~ar~~~gP~lIev~  324 (434)
                      ..+.+|+..+....||+.|++-
T Consensus       148 ~~i~~A~~~A~~~~GPV~l~iP  169 (603)
T 4feg_A          148 HVIDEAIRRAYAHQGVAVVQIP  169 (603)
T ss_dssp             HHHHHHHHHHHHHTSEEEEEEE
T ss_pred             HHHHHHHHHHhcCCCCEEEEeC
Confidence            7777888777777899999984

>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}

Probab=91.07  E-value=0.98  Score=47.43  Aligned_cols=98  Identities=13%  Similarity=0.140  Sum_probs=64.0

Q ss_pred             CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCcc-Ccccc--ccc---ccCchhhhccccCCCcEEEEeCCC
Q 013928          224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA-IGMSH--LRA---TSDPQIYKKGPAFGMPGFHVDGMD  297 (434)
Q Consensus       224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~-is~~~--~~~---~~~~d~~~~a~a~Gi~~~~VdG~D  297 (434)
                      ..++++..|=|+++.   .-++..|...+.|+|+|+-+-... .+...  ...   ....|...+++.+-....++..  
T Consensus        66 ~~v~~~TsGpG~~N~---~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~tk~~~~v~~--  140 (566)
T 2vbi_A           66 AAAAVVTFSVGAISA---MNALGGAYAENLPVILISGAPNSNDQGTGHILHHTIGKTDYSYQLEMARQVTCAAESITD--  140 (566)
T ss_dssp             CEEEEECTTTTHHHH---HHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCTHHHHHHHTTCSEEEEECS--
T ss_pred             CeEEEEeCCCCHHHH---HHHHHHHHhhCCCEEEEECCCChHHhccCceeeeeccCcchHHHHHHHhhhEeEEEEeCC--
Confidence            445666668887763   557778999999999998754321 11110  000   0112566777777666777763  


Q ss_pred             HHHHHHHHHHHHHHHHccCCCEEEEEEEe
Q 013928          298 VLKVREVAKEAIERARRGEGPTLVECETY  326 (434)
Q Consensus       298 ~~av~~a~~~Al~~ar~~~gP~lIev~t~  326 (434)
                      +.++...+.+|+..+..+.||+.|++-..
T Consensus       141 ~~~~~~~l~~A~~~a~~~~GPV~l~iP~d  169 (566)
T 2vbi_A          141 AHSAPAKIDHVIRTALRERKPAYLDIACN  169 (566)
T ss_dssp             SSSHHHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEechh
Confidence            34666778888888887789999998643

>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*

Probab=91.07  E-value=0.64  Score=48.93  Aligned_cols=98  Identities=15%  Similarity=0.093  Sum_probs=61.3

Q ss_pred             CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCcc-Ccccc--cccccCch-hhhccccCCCcEEEEeCCCHH
Q 013928          224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA-IGMSH--LRATSDPQ-IYKKGPAFGMPGFHVDGMDVL  299 (434)
Q Consensus       224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~-is~~~--~~~~~~~d-~~~~a~a~Gi~~~~VdG~D~~  299 (434)
                      -.+++|..|=|+++.   .-++..|..-+.|+|+|+-+-... ++...  ..+....| ...+++.+-....++.  ++.
T Consensus        85 p~v~~~TsGpG~~N~---~~gv~~A~~~~vPll~itg~~~~~~~~~~~~~~~~~q~~d~q~~~~~~~~k~~~~v~--~~~  159 (565)
T 2nxw_A           85 LGVAAVTYGAGAFNM---VNAVAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDTQFQVFKEITVAQARLD--DPA  159 (565)
T ss_dssp             CEEEEECTTHHHHTT---HHHHHHHHHTTCCEEEEEEECCTTCC--CCCC-------CHHHHHHTTSCSCEEECC--CTT
T ss_pred             CeEEEECCCCCHHHH---HHHHHHHHhhCCCEEEEeCCCChhhhccCcceeeeccchhhHHHHHHhhheEEEEeC--CHH
Confidence            345666678887764   568888999999999998764211 11110  00111122 4566666655666665  444


Q ss_pred             HHHHHHHHHHHHHHccCCCEEEEEEEe
Q 013928          300 KVREVAKEAIERARRGEGPTLVECETY  326 (434)
Q Consensus       300 av~~a~~~Al~~ar~~~gP~lIev~t~  326 (434)
                      ++...+.+|+..+....||+.|++-..
T Consensus       160 ~~~~~i~~A~~~A~~~~GPV~l~iP~D  186 (565)
T 2nxw_A          160 KAPAEIARVLGAARAQSRPVYLEIPRN  186 (565)
T ss_dssp             THHHHHHHHHHHHHHHTCCEEEEEEGG
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEECChh
Confidence            666777778877776789999999743

>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*

Probab=90.12  E-value=0.52  Score=49.96  Aligned_cols=92  Identities=15%  Similarity=0.011  Sum_probs=61.8

Q ss_pred             ceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHH
Q 013928          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV  304 (434)
Q Consensus       225 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a  304 (434)
                      .++++..|=|.++.   .-++..|..-+.|+|+|+-+-..........|.  .|...+++.+--....+.  ++.++.+.
T Consensus        70 ~v~~~tsGpG~~N~---~~gl~~A~~~~vPll~Itg~~p~~~~g~~~~Q~--~d~~~~~~~~tk~~~~v~--~~~~~~~~  142 (590)
T 1v5e_A           70 GVTVGSGGPGASHL---INGLYDAAMDNIPVVAILGSRPQRELNMDAFQE--LNQNPMYDHIAVYNRRVA--YAEQLPKL  142 (590)
T ss_dssp             CEEEECTTHHHHTT---HHHHHHHHHHTCCEEEEEEECCGGGTTTTCTTC--CCCHHHHHTTCSEEEECC--SGGGHHHH
T ss_pred             EEEEeCcChHHHHH---HHHHHHHHhcCCCEEEEcCCCCcccCCCCcccc--cCHHHHHHhhccEEEEeC--CHHHHHHH
Confidence            45666668787764   557888889999999998765422211111222  345555665544455554  66788889


Q ss_pred             HHHHHHHHHccC-CCEEEEEE
Q 013928          305 AKEAIERARRGE-GPTLVECE  324 (434)
Q Consensus       305 ~~~Al~~ar~~~-gP~lIev~  324 (434)
                      +++|++.+..++ ||+.| +-
T Consensus       143 i~~A~~~A~~~~~GPV~l-iP  162 (590)
T 1v5e_A          143 VDEAARMAIAKRGVAVLE-VP  162 (590)
T ss_dssp             HHHHHHHHHHTTSEEEEE-EE
T ss_pred             HHHHHHHHhcCCCceEEE-Ec
Confidence            999999998877 99999 64

>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*

Probab=89.51  E-value=0.91  Score=47.21  Aligned_cols=97  Identities=14%  Similarity=0.048  Sum_probs=62.6

Q ss_pred             CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHH
Q 013928          224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE  303 (434)
Q Consensus       224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~  303 (434)
                      ..+++|..|=|.++.   .-++..|...+.|+|+|.-+-....-.....|. ..|...+++.+--...++.  +++++..
T Consensus        64 ~~v~~~tsGpG~~N~---~~~l~~A~~~~~Pll~itg~~~~~~~~~~~~q~-~~d~~~~~~~~~k~~~~v~--~~~~~~~  137 (528)
T 1q6z_A           64 PAFINLHSAAGTGNA---MGALSNAWNSHSPLIVTAGQQTRAMIGVEALLT-NVDAANLPRPLVKWSYEPA--SAAEVPH  137 (528)
T ss_dssp             CEEEEEEHHHHHHHT---HHHHHHHHHTTCCEEEEEEECCHHHHTTTCTTC-CTTGGGSSTTSCSCEECCS--SGGGHHH
T ss_pred             CEEEEEcCChHHHHH---HHHHHHHhhcCCCEEEEeCCCcccccCCCcccc-cccHHHHHHHhhHhhhcCC--CHHHHHH
Confidence            345666778888764   557888999999999997654311100011121 1255666665544455554  5567778


Q ss_pred             HHHHHHHHHHccC-CCEEEEEEEe
Q 013928          304 VAKEAIERARRGE-GPTLVECETY  326 (434)
Q Consensus       304 a~~~Al~~ar~~~-gP~lIev~t~  326 (434)
                      .+.+|+..+..++ ||+.|++-..
T Consensus       138 ~i~~A~~~a~~~~~GPV~l~iP~d  161 (528)
T 1q6z_A          138 AMSRAIHMASMAPQGPVYLSVPYD  161 (528)
T ss_dssp             HHHHHHHHHHSSSCCCEEEEEEGG
T ss_pred             HHHHHHHHHhcCCCCcEEEEechh
Confidence            8888998888764 7999999654

>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}

Probab=89.44  E-value=1.4  Score=46.78  Aligned_cols=94  Identities=20%  Similarity=0.160  Sum_probs=63.9

Q ss_pred             ceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHH
Q 013928          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV  304 (434)
Q Consensus       225 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a  304 (434)
                      .++++..|=|+++.   .-++..|..-+.|+|+|+-+-..........|  ..|...+++.+--...++.  ++.++...
T Consensus        93 ~v~~~TsGpG~~N~---~~~l~~A~~~~vPlvvItg~~p~~~~~~~~~Q--~~d~~~~~~~~tk~~~~v~--~~~~i~~~  165 (616)
T 2pan_A           93 GVCLGTSGPAGTDM---ITALYSASADSIPILCITGQAPRARLHKEDFQ--AVDIEAIAKPVSKMAVTVR--EAALVPRV  165 (616)
T ss_dssp             EEEEECSTHHHHTS---HHHHHHHHHTTCCEEEEEEECCGGGTTTTCTT--CCCHHHHHGGGSSEEEECC--SGGGHHHH
T ss_pred             eEEEeCCCchHHHH---HHHHHHHHhcCCCEEEEecCCcccccCccccc--ccCHHHHHHHHHHhhcccC--CHHHHHHH
Confidence            34556778887764   55788899999999998876542221111112  2355666666655566664  56788899


Q ss_pred             HHHHHHHHHcc-CCCEEEEEEE
Q 013928          305 AKEAIERARRG-EGPTLVECET  325 (434)
Q Consensus       305 ~~~Al~~ar~~-~gP~lIev~t  325 (434)
                      +++|++.+..+ .||+.|++-.
T Consensus       166 l~~A~~~A~~~r~GPV~l~iP~  187 (616)
T 2pan_A          166 LQQAFHLMRSGRPGPVLVDLPF  187 (616)
T ss_dssp             HHHHHHHHHSSSCCCEEEEEEH
T ss_pred             HHHHHHHHhcCCCceEEEEcch
Confidence            99999888876 4999999854

>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}

Probab=89.22  E-value=1.4  Score=46.61  Aligned_cols=98  Identities=13%  Similarity=0.046  Sum_probs=63.6

Q ss_pred             CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCH-----
Q 013928          224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDV-----  298 (434)
Q Consensus       224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~-----  298 (434)
                      -.+++|..|=|+++.   .-++..|..-+.|+|+|.-+-....-.....|  ..|...+++.+--...+|...+-     
T Consensus        95 pgv~~~TsGpG~~N~---~~gia~A~~~~vPlv~ItG~~~~~~~g~~~~Q--~~d~~~~~~~~tk~~~~v~~~~~~~~~~  169 (604)
T 2x7j_A           95 PVLLICTSGTAAANF---YPAVVEAHYSRVPIIVLTADRPHELREVGAPQ--AINQHFLFGNFVKFFTDSALPEESPQML  169 (604)
T ss_dssp             CEEEEECSSHHHHTT---HHHHHHHHHHTCCEEEEEEECCGGGSSSCCTT--CCCCTTTTGGGSSCEEECCCCCCSHHHH
T ss_pred             CEEEEECChhHHHHH---HHHHHHHhhcCCCEEEEeCCCCHHHhCCCCCC--cCcHHHHhhhheeeeeecCCCcccchhH
Confidence            456777778888875   55888999999999999865432111111112  23555566666555666654320     


Q ss_pred             HHHHHHHHHHHHHHHcc-CCCEEEEEEEe
Q 013928          299 LKVREVAKEAIERARRG-EGPTLVECETY  326 (434)
Q Consensus       299 ~av~~a~~~Al~~ar~~-~gP~lIev~t~  326 (434)
                      ..+...+++|+..+..+ .||+.|++-..
T Consensus       170 ~~~~~~i~~A~~~A~~~~~GPV~l~iP~d  198 (604)
T 2x7j_A          170 RYIRTLASRAAGEAQKRPMGPVHVNVPLR  198 (604)
T ss_dssp             HHHHHHHHHHHHHHHSSSCCEEEEEEECC
T ss_pred             HHHHHHHHHHHHHhhCCCCCcEEEEcccC
Confidence            12777888888888874 69999999654

>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*

Probab=88.05  E-value=0.86  Score=47.88  Aligned_cols=95  Identities=15%  Similarity=0.175  Sum_probs=63.0

Q ss_pred             CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccC-cc-cccccccCchhhhccccCCCcEEEEeCCCHHHH
Q 013928          224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAI-GM-SHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKV  301 (434)
Q Consensus       224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~i-s~-~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av  301 (434)
                      ..+++|..|=|+++.   .-++..|..-+.|+|+|.-+-.... +. ....|  ..|...+++.+--...+|.  ++.++
T Consensus        73 pgv~~~TsGpG~~N~---~~~i~~A~~~~vPll~itg~~~~~~~~~~~~~~Q--~~dq~~~~~~~tk~~~~v~--~~~~~  145 (568)
T 2c31_A           73 PGVCLTVSAPGFLNG---VTSLAHATTNCFPMILLSGSSEREIVDLQQGDYE--EMDQMNVARPHCKASFRIN--SIKDI  145 (568)
T ss_dssp             CEEEEECSHHHHHHH---HHHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTT--CCCHHHHSGGGSSEEEECC--SGGGH
T ss_pred             CEEEEEcCCccHHHH---HHHHHHHHhcCCCEEEEccCCCccccCCCCCccc--ccCHHHHHHhhhheeeecC--CHHHH
Confidence            346667777777764   5688899999999999986543111 10 01112  2355556666655556664  56678


Q ss_pred             HHHHHHHHHHHHcc-CCCEEEEEEE
Q 013928          302 REVAKEAIERARRG-EGPTLVECET  325 (434)
Q Consensus       302 ~~a~~~Al~~ar~~-~gP~lIev~t  325 (434)
                      ...+.+|+..+..+ .||+.|++-.
T Consensus       146 ~~~i~~A~~~A~~~~~GPV~l~iP~  170 (568)
T 2c31_A          146 PIGIARAVRTAVSGRPGGVYVDLPA  170 (568)
T ss_dssp             HHHHHHHHHHHHSSSCCEEEEEEET
T ss_pred             HHHHHHHHHHhcCCCCceEEEeCCH
Confidence            88899999988874 5999999843

>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*

Probab=88.05  E-value=0.82  Score=47.98  Aligned_cols=95  Identities=15%  Similarity=0.215  Sum_probs=63.1

Q ss_pred             CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccC-cc-cccccccCchhhhccccCCCcEEEEeCCCHHHH
Q 013928          224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAI-GM-SHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKV  301 (434)
Q Consensus       224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~i-s~-~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av  301 (434)
                      ..+++|..|=|+++.   .-++..|..-+.|+|+|.-+-.... +. ....|  ..|...+++.+-....+|.  ++.++
T Consensus        71 pgv~~~TsGpG~~N~---~~gi~~A~~~~vPll~itg~~~~~~~~~~~~~~Q--~~dq~~~~~~~tk~~~~v~--~~~~~  143 (564)
T 2q28_A           71 PGICLTVSAPGFLNG---LTALANATVNGFPMIMISGSSDRAIVDLQQGDYE--ELDQMNAAKPYAKAAFRVN--QPQDL  143 (564)
T ss_dssp             CEEEEECSHHHHHHH---HHHHHHHHHHTCCEEEEEEECCHHHHHTTSCCTT--CCCHHHHHGGGSSEEEECC--SGGGH
T ss_pred             CEEEEEccCchHHHH---HHHHHHHHhcCCCEEEEeCCCCccccCCCCCccc--cccHHHHHHHhhheeeecC--CHHHH
Confidence            346666677777764   5678889999999999986543211 10 00112  2345556666655566664  56678


Q ss_pred             HHHHHHHHHHHHcc-CCCEEEEEEE
Q 013928          302 REVAKEAIERARRG-EGPTLVECET  325 (434)
Q Consensus       302 ~~a~~~Al~~ar~~-~gP~lIev~t  325 (434)
                      ...+.+|+..+..+ .||+.|++-.
T Consensus       144 ~~~i~~A~~~A~~~~~GPV~l~iP~  168 (564)
T 2q28_A          144 GIALARAIRVSVSGRPGGVYLDLPA  168 (564)
T ss_dssp             HHHHHHHHHHHHSSSCCEEEEEEEH
T ss_pred             HHHHHHHHHHHhcCCCceEEEEcCH
Confidence            88899999988874 5999999853

>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}

Probab=87.52  E-value=2.6  Score=44.41  Aligned_cols=98  Identities=12%  Similarity=0.086  Sum_probs=61.7

Q ss_pred             CCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCcc-CcccccccccCchhhhccccCCCcEEEEeC-CCHH
Q 013928          222 DCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA-IGMSHLRATSDPQIYKKGPAFGMPGFHVDG-MDVL  299 (434)
Q Consensus       222 ~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~-is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG-~D~~  299 (434)
                      +.-.+++|..|=|+++.   .-++..|..-+.|+|+|.-+-... ++.. ..|  ..|...+++.+--...+|.. .+..
T Consensus        73 G~pgv~~~TsGpG~~N~---~~gia~A~~d~vPll~itG~~p~~~~g~~-~~Q--e~d~~~~~~~~tk~~~~v~~~~~~~  146 (578)
T 3lq1_A           73 KRPVVLLCTSGTAAANY---FPAVAEANLSQIPLIVLTADRPHELRNVG-APQ--AMDQLHLYGSHVKDFTDMALPENSE  146 (578)
T ss_dssp             CCCEEEEECSSHHHHTT---HHHHHHHHHTTCCEEEEEEECCGGGTTSS-CTT--CCCCTTTTGGGSSEEEECCCCCCSH
T ss_pred             CCCEEEEECCchhhhhh---hHHHHHHHhcCCCeEEEeCCCCHHhhcCC-CCC--CcCHhhHHhhheeeEeecCCCCCch
Confidence            33456777778888875   558889999999999988543211 1111 112  12455555555445566643 3322


Q ss_pred             H----HHHHHHHHHHHHHcc-CCCEEEEEEE
Q 013928          300 K----VREVAKEAIERARRG-EGPTLVECET  325 (434)
Q Consensus       300 a----v~~a~~~Al~~ar~~-~gP~lIev~t  325 (434)
                      +    +..++++|+..+..+ .||+.|++-.
T Consensus       147 ~~~~~i~~~l~~A~~~A~~gr~GPV~l~iP~  177 (578)
T 3lq1_A          147 EMLRYAKWHGSRAVDIAMKTPRGPVHLNFPL  177 (578)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSCCCEEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHhhCCCCCcEEEECcc
Confidence            2    345778888888776 6999999964

>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*

Probab=87.45  E-value=1.7  Score=46.41  Aligned_cols=89  Identities=15%  Similarity=0.053  Sum_probs=55.4

Q ss_pred             ceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEE-eCCCHHHHHH
Q 013928          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHV-DGMDVLKVRE  303 (434)
Q Consensus       225 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~V-dG~D~~av~~  303 (434)
                      .++++.++++...   .++.+.+++..++|+++++...+++.+..-..+.+..|++-..   .+|.++| .-.|+.++..
T Consensus       381 ~~~~~~f~~Fl~~---a~dqi~~~a~~~~~v~~v~~~~g~~~G~dG~tH~~~ed~a~l~---~iP~l~V~~P~d~~e~~~  454 (616)
T 3mos_A          381 VPFCSTFAAFFTR---AFDQIRMAAISESNINLCGSHCGVSIGEDGPSQMALEDLAMFR---SVPTSTVFYPSDGVATEK  454 (616)
T ss_dssp             EEEEEEEGGGGGG---GHHHHHHHHHTTCCEEEEEESBSGGGCTTCGGGCBSSHHHHHH---TSTTEEEECCCSHHHHHH
T ss_pred             CEEEEehHHHHHH---HHHHHHHHHHhCCCeEEEEECCCccccCCCCcccCHHHHHHhc---CCCCCEEEecCCHHHHHH
Confidence            4566789998642   3788888899999999988776654442111112233333222   3566654 3457878877


Q ss_pred             HHHHHHHHHHccCCCEEEEE
Q 013928          304 VAKEAIERARRGEGPTLVEC  323 (434)
Q Consensus       304 a~~~Al~~ar~~~gP~lIev  323 (434)
                      +++.|+    ..++|++|..
T Consensus       455 ~l~~a~----~~~gp~~ir~  470 (616)
T 3mos_A          455 AVELAA----NTKGICFIRT  470 (616)
T ss_dssp             HHHHHH----TCCSEEEEEC
T ss_pred             HHHHHH----hcCCCEEEEE
Confidence            666554    4578987744

>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*

Probab=87.45  E-value=2.7  Score=45.30  Aligned_cols=101  Identities=20%  Similarity=0.123  Sum_probs=61.4

Q ss_pred             chhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCc--ccccccccCch
Q 013928          201 IPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIG--MSHLRATSDPQ  278 (434)
Q Consensus       201 lp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is--~~~~~~~~~~d  278 (434)
                      +.+|.|+|+.           +.-+++++.+...+..   ..+.+.+++..++||++++.+.+++.+  .+++ | +..|
T Consensus       415 v~~a~GlA~~-----------gG~~P~~~tf~~F~~~---~~~~ir~~a~~~lpvv~~~t~~g~~~G~dG~tH-q-~~ed  478 (669)
T 2r8o_A          415 TAIANGISLH-----------GGFLPYTSTFLMFVEY---ARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTH-Q-PVEQ  478 (669)
T ss_dssp             HHHHHHHHHH-----------SSCEEEEEEEGGGGGT---THHHHHHHHHTTCCCEEEEECCSGGGCTTCTTT-C-CSSH
T ss_pred             HHHHHHHHHc-----------CCCeEEEeehHHHHHH---HHHHHHHHHhcCCCEEEEEeCCCcCcCCCCCcc-C-CHHH
Confidence            3566666665           3334555555554431   266788899999999999987776644  2222 2 2333


Q ss_pred             hhhccccCCCcEEEE-eCCCHHHHHHHHHHHHHHHHccCCCEEEEE
Q 013928          279 IYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVEC  323 (434)
Q Consensus       279 ~~~~a~a~Gi~~~~V-dG~D~~av~~a~~~Al~~ar~~~gP~lIev  323 (434)
                      ++-..   .+|.++| .-.|..++...++.|++   ..++|++|-.
T Consensus       479 la~lr---~iP~l~V~~Pad~~E~~~~l~~a~~---~~~~Pv~i~~  518 (669)
T 2r8o_A          479 VASLR---VTPNMSTWRPCDQVESAVAWKYGVE---RQDGPTALIL  518 (669)
T ss_dssp             HHHHH---TSTTCEEECCSSHHHHHHHHHHHHH---CSSSCEEEEC
T ss_pred             HHHhc---CCCCCEEEecCCHHHHHHHHHHHHH---hCCCcEEEEe
Confidence            33322   3454443 34577888887777764   2368999854

>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}

Probab=86.96  E-value=2.8  Score=45.08  Aligned_cols=101  Identities=21%  Similarity=0.187  Sum_probs=61.6

Q ss_pred             chhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCc--ccccccccCch
Q 013928          201 IPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIG--MSHLRATSDPQ  278 (434)
Q Consensus       201 lp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is--~~~~~~~~~~d  278 (434)
                      +++|.|+|+.           +.-++++..+.-.+.   -.++++.+++..++||++++.+.+++.+  .+++ | +..|
T Consensus       410 ~~~a~GlA~~-----------Gg~~P~~~t~~~F~~---~~~~air~~a~~~lpvv~~~t~~g~g~G~dG~tH-q-~~ed  473 (651)
T 2e6k_A          410 GAILNGLNLH-----------GGYRAYGGTFLVFSD---YMRPAIRLAALMGVPTVFVFTHDSIALGEDGPTH-Q-PVEH  473 (651)
T ss_dssp             HHHHHHHHHH-----------SSCEEEEEEEGGGGG---GSHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT-C-CSSH
T ss_pred             HHHHHHHHHc-----------CCCEEEEEeHHHHHH---HHHHHHHHHHhcCCCEEEEEECCccccCCCcCcc-c-cHHH
Confidence            3467777766           423556665533322   1366788899999999999888876654  2222 2 2334


Q ss_pred             hhhccccCCCcEEEE-eCCCHHHHHHHHHHHHHHHHccCCCEEEEE
Q 013928          279 IYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVEC  323 (434)
Q Consensus       279 ~~~~a~a~Gi~~~~V-dG~D~~av~~a~~~Al~~ar~~~gP~lIev  323 (434)
                      ++-..   .+|.++| .-.|..++...++.|++   ..++|++|-.
T Consensus       474 la~lr---~iP~l~V~~Pad~~E~~~~l~~A~~---~~~~Pv~i~~  513 (651)
T 2e6k_A          474 LMSLR---AMPNLFVIRPADAYETFYAWLVALR---RKEGPTALVL  513 (651)
T ss_dssp             HHHHH---TSTTCEEECCSSHHHHHHHHHHHHH---CCSSCEEEEC
T ss_pred             HHHhc---CCCCcEEEecCCHHHHHHHHHHHHH---cCCCCEEEEE
Confidence            33322   3444433 34577888887777764   2268998865

>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}

Probab=86.10  E-value=3  Score=45.05  Aligned_cols=101  Identities=17%  Similarity=0.154  Sum_probs=61.6

Q ss_pred             chhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCc--ccccccccCch
Q 013928          201 IPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIG--MSHLRATSDPQ  278 (434)
Q Consensus       201 lp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is--~~~~~~~~~~d  278 (434)
                      +.+|.|+|+.           +.-++++.++.+-..   ...+.+.+++..++||+++....+++.+  .+++  .+..|
T Consensus       416 v~~a~GlA~~-----------gG~~P~~~tf~~F~~---~~~~~ir~~a~~~lpvv~~~t~~g~g~G~dG~TH--q~~ed  479 (663)
T 3kom_A          416 AAIMNGLSLY-----------GGIKPYGGTFLVFSD---YSRNAIRMSALMKQPVVHVMSHDSIGLGEDGPTH--QPIEH  479 (663)
T ss_dssp             HHHHHHHHHH-----------SSCEEEEEEEGGGHH---HHHHHHHHHHHTTCCCEEEEECCSGGGCTTCTTT--CCSSH
T ss_pred             HHHHHHHHHc-----------CCCEEEEEehHHHHH---HHHHHHHHHHhcCCCEEEEEeCCccccCCCCCCc--CCHHH
Confidence            4566777765           334566666655442   1357788889999999999877765544  3332  22334


Q ss_pred             hhhccccCCCcEEEE-eCCCHHHHHHHHHHHHHHHHccCCCEEEEE
Q 013928          279 IYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVEC  323 (434)
Q Consensus       279 ~~~~a~a~Gi~~~~V-dG~D~~av~~a~~~Al~~ar~~~gP~lIev  323 (434)
                      ++-..   .+|.++| .-.|..++..+++.|++   ..++|++|-.
T Consensus       480 ~a~lr---~iPnl~V~~Pad~~e~~~~l~~A~~---~~~~Pv~ir~  519 (663)
T 3kom_A          480 VPSLR---LIPNLSVWRPADTIETMIAWKEAVK---SKDTPSVMVL  519 (663)
T ss_dssp             HHHHH---TSTTCEEECCCSHHHHHHHHHHHHH---CSSCCEEEEC
T ss_pred             HHHHh---cCCCcEEEeeCCHHHHHHHHHHHHH---hCCCCEEEEc
Confidence            33222   4555544 33577787777776653   2579999853

>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*

Probab=84.99  E-value=3.2  Score=44.89  Aligned_cols=101  Identities=14%  Similarity=0.157  Sum_probs=60.8

Q ss_pred             chhhHHHHHHHHHHHhhhhhcCCCc-eEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCc--ccccccccCc
Q 013928          201 IPVATGAAFTSKYRREVLKEADCDH-VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIG--MSHLRATSDP  277 (434)
Q Consensus       201 lp~AvGaA~A~k~~~~~~~~~~~d~-~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is--~~~~~~~~~~  277 (434)
                      +++|.|+|+.           +.-+ +++..+.+-+.   -..+++.+++..++||+|++...+++.+  .+++ | +..
T Consensus       422 vg~a~GlA~~-----------Gg~~~P~~~~f~~F~~---~~~~air~~a~~~lpvv~v~t~~g~g~G~dG~tH-q-~~e  485 (680)
T 1gpu_A          422 GAIMNGISAF-----------GANYKPYGGTFLNFVS---YAAGAVRLSALSGHPVIWVATHDSIGVGEDGPTH-Q-PIE  485 (680)
T ss_dssp             HHHHHHHHHH-----------CTTCEEEEEEEHHHHG---GGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT-C-CSS
T ss_pred             HHHHHHHHhc-----------CCCceEEEeehHHHHH---HHHHHHHHHHhcCCCEEEEEeCCccccCCCCCcc-C-CHH
Confidence            3467777766           4234 45555543332   2366788899999999999877776544  2332 2 233


Q ss_pred             hhhhccccCCCcEEEE-eCCCHHHHHHHHHHHHHHHHccCCCEEEEE
Q 013928          278 QIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVEC  323 (434)
Q Consensus       278 d~~~~a~a~Gi~~~~V-dG~D~~av~~a~~~Al~~ar~~~gP~lIev  323 (434)
                      |++-..   .+|.++| .-.|+.++...++.|++   ..++|++|-.
T Consensus       486 dla~lr---~iP~l~V~~Pad~~e~~~~l~~A~~---~~~~Pv~i~~  526 (680)
T 1gpu_A          486 TLAHFR---SLPNIQVWRPADGNEVSAAYKNSLE---SKHTPSIIAL  526 (680)
T ss_dssp             HHHHHH---TSSSCEEECCCSHHHHHHHHHHHHH---CSSCCEEEEC
T ss_pred             HHHHhc---CCCCCEEEecCCHHHHHHHHHHHHH---hCCCcEEEEe
Confidence            333222   3455544 34577788887777764   2378999853

>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*

Probab=84.48  E-value=2  Score=45.02  Aligned_cols=96  Identities=8%  Similarity=0.056  Sum_probs=60.6

Q ss_pred             ceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccC---cccccc---cccCchhhhccccCCCcEEEEeCCCH
Q 013928          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAI---GMSHLR---ATSDPQIYKKGPAFGMPGFHVDGMDV  298 (434)
Q Consensus       225 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~i---s~~~~~---~~~~~d~~~~a~a~Gi~~~~VdG~D~  298 (434)
                      .+++|..|=|+++.   .-++..|..-+.|+|+|.-+-....   ....+.   .....+...+++.+--...++.  ++
T Consensus        68 ~v~~~TsGpG~~N~---~~gia~A~~~~~Pll~itg~~~~~~~~~~~~~~~~~g~~~~q~~~~~~~~~~k~~~~v~--~~  142 (563)
T 2vk8_A           68 SCIITTFGVGELSA---LNGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNGDFTVFHRMSANISETTAMIT--DI  142 (563)
T ss_dssp             EEEEEETTHHHHHH---HHHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTTSCSSSCSSHHHHHHHTTCSEEEECC--CT
T ss_pred             cEEEEcCCCcHHHH---HHHHHHHHhhCCCEEEEECCCChHHhhcccccccccCCcchHHHHHHhhhhEEEEEEeC--CH
Confidence            46677778888763   5578889999999999986543111   000000   0011245566666666666665  44


Q ss_pred             HHHHHHHHHHHHHHHccCCCEEEEEEE
Q 013928          299 LKVREVAKEAIERARRGEGPTLVECET  325 (434)
Q Consensus       299 ~av~~a~~~Al~~ar~~~gP~lIev~t  325 (434)
                      .++.+.+.+|+..+....||+.|++-.
T Consensus       143 ~~~~~~i~~A~~~A~~~~GPV~l~iP~  169 (563)
T 2vk8_A          143 ATAPAEIDRCIRTTYVTQRPVYLGLPA  169 (563)
T ss_dssp             TTHHHHHHHHHHHHHHHTSCEEEEEET
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEech
Confidence            456667777777777667999999854

>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*

Probab=84.35  E-value=3.3  Score=44.44  Aligned_cols=100  Identities=16%  Similarity=0.086  Sum_probs=61.1

Q ss_pred             chhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCc--ccccccccCch
Q 013928          201 IPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIG--MSHLRATSDPQ  278 (434)
Q Consensus       201 lp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is--~~~~~~~~~~d  278 (434)
                      +.+|.|+|+.           +.-++++.++.+  |.+ ..++.+.+++..++||+|+....+++.+  .+++  .+..|
T Consensus       395 v~~a~GlA~~-----------gG~~P~~~~f~~--F~~-~~~~~ir~~a~~~~pv~~~~t~~g~g~G~dG~TH--q~~ed  458 (632)
T 3l84_A          395 AAINNAFARY-----------GIFLPFSATFFI--FSE-YLKPAARIAALMKIKHFFIFTHDSIGVGEDGPTH--QPIEQ  458 (632)
T ss_dssp             HHHHHHHHHH-----------SSCEEEEEEEGG--GHH-HHHHHHHHHHHHTCCCEEEEECCSGGGCTTCGGG--SCSSH
T ss_pred             HHHHHHHHHc-----------CCCEEEEEecHH--HHH-HHHHHHHHHhccCCCEEEEEECCCcCCCCCCCCC--CCHhH
Confidence            4556676665           334556666544  332 2366778889999999999877765543  3332  22334


Q ss_pred             hhhccccCCCcEEEE-eCCCHHHHHHHHHHHHHHHHccCCCEEEEE
Q 013928          279 IYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVEC  323 (434)
Q Consensus       279 ~~~~a~a~Gi~~~~V-dG~D~~av~~a~~~Al~~ar~~~gP~lIev  323 (434)
                      ++-..   .+|.++| .-.|..++..+++.|++    .++|++|-.
T Consensus       459 ~a~lr---~iP~l~V~~P~d~~e~~~~l~~A~~----~~~Pv~ir~  497 (632)
T 3l84_A          459 LSTFR---AMPNFLTFRPADGVENVKAWQIALN----ADIPSAFVL  497 (632)
T ss_dssp             HHHHH---HSSSCEEECCSSHHHHHHHHHHHHH----CSSCEEEEC
T ss_pred             HHHHh---cCCCCEEEecCCHHHHHHHHHHHHh----CCCCEEEEE
Confidence            33322   3455443 33577788887777764    678998854

>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*

Probab=82.80  E-value=2.9  Score=43.83  Aligned_cols=97  Identities=12%  Similarity=0.048  Sum_probs=61.4

Q ss_pred             CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCc-c--ccc--ccc-cCchhhhccccCCCcEEEEeCCC
Q 013928          224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIG-M--SHL--RAT-SDPQIYKKGPAFGMPGFHVDGMD  297 (434)
Q Consensus       224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is-~--~~~--~~~-~~~d~~~~a~a~Gi~~~~VdG~D  297 (434)
                      ..++++..|=|+++.   .-++..|..-+.|+|+|+-+...... .  ...  .+. ...+...+++.+-....++..  
T Consensus        88 ~~v~~~tsGpG~~N~---~~gi~~A~~~~vPlv~itg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~--  162 (570)
T 2vbf_A           88 AAAFLTTFGVGELSA---INGLAGSYAENLPVVEIVGSPTSKVQNDGKFVHHTLADGDFKHFMKMHEPVTAARTLLTA--  162 (570)
T ss_dssp             CEEEEEETTHHHHHH---HHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCCHHHHHTGGGCSEEEECCT--
T ss_pred             CeEEEEcCCCCHHHH---HHHHHHHhhhCCCEEEEeCCCCHHHhhccccceeeccccchHHHHHHhhhhEEEEEEECc--
Confidence            446677778887763   55788899999999999866542111 0  000  000 011244556666666667654  


Q ss_pred             HHHHHHHHHHHHHHHHccCCCEEEEEEEe
Q 013928          298 VLKVREVAKEAIERARRGEGPTLVECETY  326 (434)
Q Consensus       298 ~~av~~a~~~Al~~ar~~~gP~lIev~t~  326 (434)
                       .++...+++|++.+..+.||+.|++-..
T Consensus       163 -~~~~~~l~~A~~~A~~~~GPV~l~iP~d  190 (570)
T 2vbf_A          163 -ENATYEIDRVLSQLLKERKPVYINLPVD  190 (570)
T ss_dssp             -TTHHHHHHHHHHHHHHHCCCEEEEEEHH
T ss_pred             -ccHHHHHHHHHHHHhhCCCCEEEEcchh
Confidence             4666777778877777779999999643

>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9

Probab=82.25  E-value=2.7  Score=43.77  Aligned_cols=107  Identities=12%  Similarity=0.046  Sum_probs=66.7

Q ss_pred             hhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCc---ccccc--c-cc
Q 013928          202 PVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIG---MSHLR--A-TS  275 (434)
Q Consensus       202 p~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is---~~~~~--~-~~  275 (434)
                      -+|.|.|.+.          + ..++++..|=|.++.   .-++..|..-+.|+|+|+-+-.....   .....  . ..
T Consensus        57 ~~A~Gyar~t----------g-~~v~~~tsGpG~~N~---~~gv~~A~~~~~Pll~itg~~p~~~~~~~~~~~~~~g~~~  122 (552)
T 1ovm_A           57 YAADGYARCK----------G-FAALLTTFGVGELSA---MNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDGE  122 (552)
T ss_dssp             HHHHHHHHHH----------S-CEEEEEETTHHHHHT---HHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSC
T ss_pred             HHHHHHHHhh----------C-CcEEEEccCCcHHHH---HHHHHHHhhhcCCEEEEECCCCHHHHhcccccccccCCCc
Confidence            3466666652          3 336777788888764   55888999999999999865431110   00000  0 01


Q ss_pred             CchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEE
Q 013928          276 DPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECET  325 (434)
Q Consensus       276 ~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t  325 (434)
                      ..+...+++.+-....+|..   .++...+++|++.+....||+.|++-.
T Consensus       123 ~q~~~~~~~~~tk~~~~v~~---~~~~~~i~~A~~~a~~~~GPV~l~iP~  169 (552)
T 1ovm_A          123 FRHFYHMSEPITVAQAVLTE---QNACYEIDRVLTTMLRERRPGYLMLPA  169 (552)
T ss_dssp             CSHHHHHTGGGCSEEEECCT---TTHHHHHHHHHHHHHHHTCCEEEEEEH
T ss_pred             HHHHHHHHHhheeEEEEEcc---ccHHHHHHHHHHHHHhCCCCEEEEeeh
Confidence            12345566666666677764   356666777777776667999999954

>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1

Probab=82.03  E-value=3.7  Score=44.30  Aligned_cols=101  Identities=15%  Similarity=0.100  Sum_probs=61.8

Q ss_pred             chhhHHHHHHHHHHHhhhhhcC-CCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCc--ccccccccCc
Q 013928          201 IPVATGAAFTSKYRREVLKEAD-CDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIG--MSHLRATSDP  277 (434)
Q Consensus       201 lp~AvGaA~A~k~~~~~~~~~~-~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is--~~~~~~~~~~  277 (434)
                      +++|.|+|+.           + .-++++.++.+.+.   -.++++..++..++||++++...+++.+  .+++ | +..
T Consensus       427 v~~a~GlA~~-----------G~~~~P~~~t~~~F~~---~~~~~ir~~a~~~lpvv~~~t~~g~g~G~dG~tH-q-~~e  490 (675)
T 1itz_A          427 GAICNGIALH-----------SPGFVPYCATFFVFTD---YMRGAMRISALSEAGVIYVMTHDSIGLGEDGPTH-Q-PIE  490 (675)
T ss_dssp             HHHHHHHHTT-----------CTTCEEEEEEEGGGHH---HHHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT-C-CSS
T ss_pred             HHHHHHHHhc-----------CCCCEEEEEEHHHHHH---HHHHHHHHHHhcCCCEEEEEECCccccCCCCCCc-C-cHH
Confidence            3456666655           3 24556666655443   2367788899999999999977765543  2222 2 233


Q ss_pred             hhhhccccCCCcEEEE-eCCCHHHHHHHHHHHHHHHHccCCCEEEEE
Q 013928          278 QIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVEC  323 (434)
Q Consensus       278 d~~~~a~a~Gi~~~~V-dG~D~~av~~a~~~Al~~ar~~~gP~lIev  323 (434)
                      |++-.   -.+|.++| .-.|..++...++.|++   ..++|++|-.
T Consensus       491 dla~l---r~iP~l~V~~Pad~~e~~~~l~~a~~---~~~~Pv~i~~  531 (675)
T 1itz_A          491 HLVSF---RAMPNILMLRPADGNETAGAYKVAVL---NRKRPSILAL  531 (675)
T ss_dssp             HHHHH---HSSSSCEEECCCSHHHHHHHHHHHHH---CTTSCEEEEE
T ss_pred             HHHHh---ccCCCeEEEECCCHHHHHHHHHHHHH---hCCCcEEEEe
Confidence            33322   23565544 34578888887777764   2378999854

>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*

Probab=81.79  E-value=6.8  Score=40.91  Aligned_cols=96  Identities=9%  Similarity=0.020  Sum_probs=59.7

Q ss_pred             CCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCc-cCcccccccccCchhhhccccCCCcEEEEeCCC---
Q 013928          222 DCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLW-AIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMD---  297 (434)
Q Consensus       222 ~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y-~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D---  297 (434)
                      +.-.+++|..|=|+++.   .-++..|..-+.|+|+|.-+-.. .++.. ..|  ..|...+++.+--....|...+   
T Consensus        70 G~pgv~~~TsGpG~~N~---~~gia~A~~d~vPll~itG~~~~~~~g~~-~~Q--~~d~~~~~~~~tk~~~~v~~~~~~~  143 (556)
T 3hww_A           70 KQPVAVIVTSGTAVANL---YPALIEAGLTGEKLILLTADRPPELIDCG-ANQ--AIRQPGMFASHPTHSISLPRPTQDI  143 (556)
T ss_dssp             CSCEEEEECSSHHHHTT---HHHHHHHHHHCCCEEEEEEECCGGGSSSS-CTT--CCCCTTTTTTCSSEEEECCCCCTTS
T ss_pred             CCCEEEEECCCcHHHhh---hHHHHHHHHhCCCeEEEeCCCCHHHhccC-CCc--cccHHHHHhhheeEEEecCCCcccc
Confidence            33456777788888875   55888999999999998854431 12211 122  2345555555544555664332   


Q ss_pred             -HHHHHHHHHHHHHHHHccCCCEEEEEEE
Q 013928          298 -VLKVREVAKEAIERARRGEGPTLVECET  325 (434)
Q Consensus       298 -~~av~~a~~~Al~~ar~~~gP~lIev~t  325 (434)
                       ...+.+++++|+.  ....||+.|++-.
T Consensus       144 ~~~~i~~~i~~A~~--~~r~GPV~i~iP~  170 (556)
T 3hww_A          144 PARWLVSTIDHALG--TLHAGGVHINCPF  170 (556)
T ss_dssp             CHHHHHHHHHHHHH--SCCSSCEEEEEEC
T ss_pred             cHHHHHHHHHHHHh--cCCCCCEEEeCCc
Confidence             3457777777772  1235899999964

>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}

Probab=81.72  E-value=4.5  Score=43.13  Aligned_cols=101  Identities=17%  Similarity=0.193  Sum_probs=60.7

Q ss_pred             chhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCc--ccccccccCch
Q 013928          201 IPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIG--MSHLRATSDPQ  278 (434)
Q Consensus       201 lp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is--~~~~~~~~~~d  278 (434)
                      +.+|.|+|++           + -++++.++++..  +-.+-+-++.++..++|+++++.+.++ .+  .+++.  ...|
T Consensus       374 ~~~a~G~A~~-----------G-~rp~~~~~~~F~--~~a~dqi~~~~a~~~~pvv~~~~~~g~-~g~~G~tH~--~~~d  436 (621)
T 2o1s_A          374 VTFAAGLAIG-----------G-YKPIVAIYSTFL--QRAYDQVLHDVAIQKLPVLFAIDRAGI-VGADGQTHQ--GAFD  436 (621)
T ss_dssp             HHHHHHHHHT-----------T-CEEEEEEETTGG--GGGHHHHHHTTTTTTCCCEEEEESCBC-CCTTCGGGC--BCSH
T ss_pred             HHHHHHHHHC-----------C-CEEEEEehHhHH--HHHHHHHHHHHHhcCCCEEEEEECCcc-CCCCCCccC--chHH
Confidence            4466677665           2 456777788864  222234577788999999999987764 22  22222  1234


Q ss_pred             hhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEE
Q 013928          279 IYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC  323 (434)
Q Consensus       279 ~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev  323 (434)
                      ++-...-=|+.++.  -.|+.++...++.|++   ..++|++|-.
T Consensus       437 ~~~~~~iP~l~v~~--P~d~~e~~~~l~~a~~---~~~~Pv~i~~  476 (621)
T 2o1s_A          437 LSYLRCIPEMVIMT--PSDENECRQMLYTGYH---YNDGPSAVRY  476 (621)
T ss_dssp             HHHTTTSTTCEEEC--CSSHHHHHHHHHHHHH---CCSSCEEEEC
T ss_pred             HHHHhcCCCCEEEe--cCCHHHHHHHHHHHHH---cCCCCEEEEe
Confidence            33322212444443  4578888888887764   2378998865

>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}

Probab=81.52  E-value=2.8  Score=44.85  Aligned_cols=100  Identities=16%  Similarity=0.152  Sum_probs=58.8

Q ss_pred             chhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCc--ccccccccCch
Q 013928          201 IPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIG--MSHLRATSDPQ  278 (434)
Q Consensus       201 lp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is--~~~~~~~~~~d  278 (434)
                      +.+|.|+|++           + -++++.++.+..  +-.+-+-++.++..++||++++.+.++ .+  .+++.+  ..|
T Consensus       377 ~~~a~G~A~~-----------G-~rp~~~~~~~F~--~~a~dqi~~~~a~~~~pvv~~~~~~g~-~g~dG~tH~~--~~d  439 (629)
T 2o1x_A          377 VTTAAGMALQ-----------G-MRPVVAIYSTFL--QRAYDQVLHDVAIEHLNVTFCIDRAGI-VGADGATHNG--VFD  439 (629)
T ss_dssp             HHHHHHHHHT-----------T-CEEEEEEEHHHH--GGGHHHHHHTTTTTTCCCEEEEESBBC-CCTTCTTTCB--CSH
T ss_pred             HHHHHHHHHc-----------C-CEEEEEecHHHH--HHHHHHHHHHHhhcCCCEEEEEECCcc-CCCCCcccCc--cHH
Confidence            4466677765           2 355666666643  322334567788999999999977664 22  122211  234


Q ss_pred             hhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEE
Q 013928          279 IYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC  323 (434)
Q Consensus       279 ~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev  323 (434)
                      ++-...-=|+.++  .-.|+.++...++.|++.    ++|++|-.
T Consensus       440 ~a~~r~iP~l~v~--~P~d~~e~~~~~~~a~~~----~~Pv~i~~  478 (629)
T 2o1x_A          440 LSFLRSIPGVRIG--LPKDAAELRGMLKYAQTH----DGPFAIRY  478 (629)
T ss_dssp             HHHTTTSTTCEEE--CCSSHHHHHHHHHHHHHS----SSCEEEEC
T ss_pred             HHHHHccCCcEEE--ecCCHHHHHHHHHHHHhC----CCCEEEEe
Confidence            3322221244433  345888888888877753    68999865

>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*

Probab=81.44  E-value=6.9  Score=42.43  Aligned_cols=74  Identities=23%  Similarity=0.265  Sum_probs=46.2

Q ss_pred             HHHHHHHHHcCCCeEEEEEcCCccCc--ccccccccCchhhhccccCCCcEEEE-eCCCHHHHHHHHHHHHHHHHccCCC
Q 013928          242 FECLNMAALWKLPIVFVVENNLWAIG--MSHLRATSDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGP  318 (434)
Q Consensus       242 ~EaLn~A~~~~LPvI~VV~NN~y~is--~~~~~~~~~~d~~~~a~a~Gi~~~~V-dG~D~~av~~a~~~Al~~ar~~~gP  318 (434)
                      ..++.+++..++||+|++...+++.+  .+++  .+..|++-..   .+|.++| .-.|..++..+++.|++   ..++|
T Consensus       467 ~~air~~al~~lpVv~v~~~~gigvG~dG~TH--q~ied~a~lr---~iPnl~V~~Pad~~E~~~~l~~Ai~---~~~~P  538 (690)
T 3m49_A          467 RPAIRLAALMQLPVTYVFTHDSIAVGEDGPTH--EPIEQLAALR---AMPNVSVIRPADGNESVAAWRLALE---STNKP  538 (690)
T ss_dssp             HHHHHHHHHHTCCCEEEEECCSGGGCTTCGGG--CCSSHHHHHH---TSTTCEEECCSSHHHHHHHHHHHHH---CSSSC
T ss_pred             HHHHHHHHhcCCCcEEEEECCCcCCCCCCCcc--CCHHHHHHHh---cCCCCEEEeeCCHHHHHHHHHHHHH---cCCCC
Confidence            34577889999999999988775444  3332  2233443222   3555543 33577788777776663   23689


Q ss_pred             EEEEE
Q 013928          319 TLVEC  323 (434)
Q Consensus       319 ~lIev  323 (434)
                      ++|-.
T Consensus       539 v~ir~  543 (690)
T 3m49_A          539 TALVL  543 (690)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            99853

>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1

Probab=80.71  E-value=7.1  Score=42.10  Aligned_cols=100  Identities=14%  Similarity=0.092  Sum_probs=59.8

Q ss_pred             hhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCc--ccccccccCchh
Q 013928          202 PVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIG--MSHLRATSDPQI  279 (434)
Q Consensus       202 p~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is--~~~~~~~~~~d~  279 (434)
                      ++|.|+|+.           +.-++++.++..-+.   -..+++..++..++|+++++...+++.+  .+++ | +..++
T Consensus       416 ~~a~GlA~~-----------GG~~P~~~~~~~F~~---~~~~~ir~~a~~~~pvv~~~t~~g~g~G~dG~tH-q-~~edl  479 (673)
T 1r9j_A          416 AILNGLDAH-----------DGIIPFGGTFLNFIG---YALGAVRLAAISHHRVIYVATHDSIGVGEDGPTH-Q-PVELV  479 (673)
T ss_dssp             HHHHHHHHH-----------SSCEEEEEEEGGGGG---GGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT-C-CSSHH
T ss_pred             HHHHHHHhc-----------CCCEEEEEehHHHHH---HHHHHHHHHHhcCCCEEEEEECCccCcCCCCccc-C-CHHHH
Confidence            456676655           323556666544332   2356788899999999999877765554  2222 2 23333


Q ss_pred             hhccccCCCcEEEE-eCCCHHHHHHHHHHHHHHHHccCCCEEEEE
Q 013928          280 YKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVEC  323 (434)
Q Consensus       280 ~~~a~a~Gi~~~~V-dG~D~~av~~a~~~Al~~ar~~~gP~lIev  323 (434)
                      +-..   .+|.++| .-.|..++...++.|++   ..++|++|-.
T Consensus       480 a~lr---~iP~l~V~~Pad~~e~~~~l~~a~~---~~~~Pv~i~~  518 (673)
T 1r9j_A          480 AALR---AMPNLQVIRPSDQTETSGAWAVALS---SIHTPTVLCL  518 (673)
T ss_dssp             HHHH---HSTTCEEECCSSHHHHHHHHHHHHH---CTTCCEEEEC
T ss_pred             HHHc---CCCCCEEEeCCCHHHHHHHHHHHHH---hCCCeEEEEE
Confidence            3222   2555543 34577788887777764   2378999854

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	434
d2ozla1	361	c.36.1.11 (A:1-361) E1-beta subunit of pyruvate de	7e-78
d1umda_	362	c.36.1.11 (A:) Branched-chain alpha-keto acid dehy	3e-73
d1w85a_	365	c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, Pd	2e-70
d1qs0a_	407	c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B	2e-70
d2bfda1	395	c.36.1.11 (A:6-400) Branched-chain alpha-keto acid	1e-67
d1q6za3	183	c.36.1.9 (A:342-524) Benzoylformate decarboxylase	6e-07
d2ieaa2	415	c.36.1.10 (A:56-470) Pyruvate dehydrogenase E1 com	1e-05
d2djia3	229	c.36.1.9 (A:364-592) Pyruvate oxidase {Aerococcus	2e-04
d1ybha3	208	c.36.1.9 (A:460-667) Acetohydroxyacid synthase cat	0.001
d1ovma3	196	c.36.1.9 (A:356-551) Indole-3-pyruvate decarboxyla	0.002

>d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate dehydrogenase (PP module) {Human (Homo sapiens) [TaxId: 9606]} Length = 361

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: E1-beta subunit of pyruvate dehydrogenase (PP module)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  244 bits (622), Expect = 7e-78
 Identities = 117/328 (35%), Positives = 173/328 (52%), Gaps = 13/328 (3%)

Query: 84  ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 143
           +T+++GL+ Y  M   R  E    Q+Y +  + GF HL +GQEA   G    +   D ++
Sbjct: 27  LTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLI 86

Query: 144 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 203
           + YR H    ++G+  R +++EL G+  GC +  G    M     N  GG   +G  +P+
Sbjct: 87  TAYRAHGFTFTRGLSVREILAELTGRKGGCAK--GKGGSMHMYAKNFYGGNGIVGAQVPL 144

Query: 204 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 263
             G A   KY  +       D V L  +GDG  N GQ FE  NMAALWKLP +F+ ENN 
Sbjct: 145 GAGIALACKYNGK-------DEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNR 197

Query: 264 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323
           + +G S  RA +    YK      +PG  VDGMD+L VRE  + A    R G+GP L+E 
Sbjct: 198 YGMGTSVERAAASTDYYK--RGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPILMEL 255

Query: 324 ETYRFRGHSLADPDELRDPAE--KARYAARDPITALKKYLIESSLASEAELKAIEKKIDE 381
           +TYR+ GH ++DP       E  +   +  DPI  LK  ++ S+LAS  ELK I+ ++ +
Sbjct: 256 QTYRYHGHEMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRK 315

Query: 382 VVEDAVEFADESAPPPRSQLLENVFADP 409
            +EDA +FA     PP  +L  ++++  
Sbjct: 316 EIEDAAQFATADPEPPLEELGYHIYSSD 343

>d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid dehydrogenase, PP module {Thermus thermophilus [TaxId: 274]} Length = 362

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: Branched-chain alpha-keto acid dehydrogenase, PP module
species: Thermus thermophilus [TaxId: 274]

 Score =  232 bits (591), Expect = 3e-73
 Identities = 109/328 (33%), Positives = 164/328 (50%), Gaps = 10/328 (3%)

Query: 84  ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKE-DSV 142
           +  ++   LY DM+  R  ++    +   GK   F+    G EA        ++   D V
Sbjct: 28  LEGEKLRRLYRDMLAARMLDERYTILIRTGKT-SFIAPAAGHEAAQVAIAHAIRPGFDWV 86

Query: 143 VSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIP 202
              YRDH  AL+ G+P + ++ ++        +G+    H  SK  N     + I   +P
Sbjct: 87  FPYYRDHGLALALGIPLKELLGQMLATKADPNKGRQMPEHPGSKALNFFTVASPIASHVP 146

Query: 203 VATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN 262
            A GAA + K  R          V +  FGDG  + G ++  +N AA+   P VF+ ENN
Sbjct: 147 PAAGAAISMKLLRT-------GQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENN 199

Query: 263 LWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVE 322
            +AI + +   T  P I  K  AFG+PG+ VDGMDVL    V KEA+ERARRGEGP+LVE
Sbjct: 200 FYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERARRGEGPSLVE 259

Query: 323 CETYRFRGHSLADPD-ELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIDE 381
              YR+  HS AD D   R   E A +  +DPI   +++L    L +E   + + ++I  
Sbjct: 260 LRVYRYGPHSSADDDSRYRPKEEVAFWRKKDPIPRFRRFLEARGLWNEEWEEDVREEIRA 319

Query: 382 VVEDAVEFADESAPPPRSQLLENVFADP 409
            +E  ++ A+E+ P P   + E+VFA+ 
Sbjct: 320 ELERGLKEAEEAGPVPPEWMFEDVFAEK 347

>d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus stearothermophilus [TaxId: 1422]} Length = 365

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: Pyruvate dehydrogenase E1-alpha, PdhA
species: Bacillus stearothermophilus [TaxId: 1422]

 Score =  224 bits (572), Expect = 2e-70
 Identities = 93/328 (28%), Positives = 149/328 (45%), Gaps = 19/328 (5%)

Query: 84  ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 143
           ++ ++  EL   M+  R  +     +  +G++ GF     GQEA        L+KED ++
Sbjct: 38  LSDEQLKELMRRMVYTRILDQRSISLNRQGRL-GFYAPTAGQEASQIASHFALEKEDFIL 96

Query: 144 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 203
             YRD    +  G+P         G             +   +  N+L     IG     
Sbjct: 97  PGYRDVPQIIWHGLPLYQAFLFSRGH---------FHGNQIPEGVNVLPPQIIIGAQYIQ 147

Query: 204 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 263
           A G A   K R           V + + GDG  + G F+E +N A  +K P +FVV+NN 
Sbjct: 148 AAGVALGLKMRG-------KKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNR 200

Query: 264 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323
           +AI     + T    + +K  A G+PG  VDGMD L V    K A ERA  GEGPTL+E 
Sbjct: 201 FAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIET 260

Query: 324 ETYRFRGHSLAD--PDELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIDE 381
             +R+  H+++   P   R    +  +A +DP+   +K+L    L SE E   + ++  E
Sbjct: 261 LCFRYGPHTMSGDDPTRYRSKELENEWAKKDPLVRFRKFLEAKGLWSEEEENNVIEQAKE 320

Query: 382 VVEDAVEFADESAPPPRSQLLENVFADP 409
            +++A++ ADE+     + L+  +F + 
Sbjct: 321 EIKEAIKKADETPKQKVTDLISIMFEEL 348

>d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP module {Pseudomonas putida [TaxId: 303]} Length = 407

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: 2-oxoisovalerate dehydrogenase (E1B), PP module
species: Pseudomonas putida [TaxId: 303]

 Score =  225 bits (575), Expect = 2e-70
 Identities = 83/334 (24%), Positives = 137/334 (41%), Gaps = 16/334 (4%)

Query: 84  ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 143
           I  Q   +    M+  R F+        + KM  F     G+EA+ +G    L + D   
Sbjct: 71  IDPQILRQGMRAMLKTRIFDSRMVVAQRQKKM-SFYMQSLGEEAIGSGQALALNRTDMCF 129

Query: 144 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 203
            TYR     +++ V    ++ +L        +G+   +    +E         +      
Sbjct: 130 PTYRQQSILMARDVSLVEMICQLLSNERDPLKGRQLPIMYSVREAGFFTISGNLATQFVQ 189

Query: 204 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 263
           A G A  S  +           +  A+ GDG      F   L  A +++ P++  V NN 
Sbjct: 190 AVGWAMASAIKG-------DTKIASAWIGDGATAESDFHTALTFAHVYRAPVILNVVNNQ 242

Query: 264 WAIGMSHLRATSDPQI-YKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVE 322
           WAI      A  +      +G   G+    VDG D + V   ++ A ERARRG GP+L+E
Sbjct: 243 WAISTFQAIAGGESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWAAERARRGLGPSLIE 302

Query: 323 CETYRFRGHSLA-DPDELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIDE 381
             TYR   HS + DP + R   + + +   DPI  LK++LI+    SE E +A   + + 
Sbjct: 303 WVTYRAGPHSTSDDPSKYRPADDWSHFPLGDPIARLKQHLIKIGHWSEEEHQATTAEFEA 362

Query: 382 VVEDAVEFADE------SAPPPRSQLLENVFADP 409
            V  A + A++         P  + + E+V+ + 
Sbjct: 363 AVIAAQKEAEQYGTLANGHIPSAASMFEDVYKEM 396

>d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid dehydrogenase, PP module {Human (Homo sapiens) [TaxId: 9606]} Length = 395

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: Branched-chain alpha-keto acid dehydrogenase, PP module
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  218 bits (557), Expect = 1e-67
 Identities = 86/328 (26%), Positives = 143/328 (43%), Gaps = 10/328 (3%)

Query: 84  ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 143
           + K++ L+LY+ M L  + + +  +   +G++  ++  Y G+E    G    L   D V 
Sbjct: 47  LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY-GEEGTHVGSAAALDNTDLVF 105

Query: 144 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 203
              R+    + +  P    M++ +G  +   +G+   +H   KE + +   + +   IP 
Sbjct: 106 GQAREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQ 165

Query: 204 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 263
           A GAA+ +K           + V + +FG+G  + G      N AA  + PI+F   NN 
Sbjct: 166 AVGAAYAAKRAN-------ANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNG 218

Query: 264 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323
           +AI            I  +GP +G+    VDG DV  V    KEA  RA     P L+E 
Sbjct: 219 YAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEA 278

Query: 324 ETYRFRGHSLADPDEL-RDPAEKARYAARD-PITALKKYLIESSLASEAELKAIEKKIDE 381
            TYR    S +D     R   E   +  +D PI+ L+ YL+      E + KA  K+   
Sbjct: 279 MTYRIGHASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRR 338

Query: 382 VVEDAVEFADESAPPPRSQLLENVFADP 409
            V +A E A+    P  + L  +V+ + 
Sbjct: 339 KVMEAFEQAERKPKPNPNLLFSDVYQEM 366

>d1q6za3 c.36.1.9 (A:342-524) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]} Length = 183

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Benzoylformate decarboxylase
species: Pseudomonas putida [TaxId: 303]

 Score = 47.3 bits (111), Expect = 6e-07
 Identities = 27/187 (14%), Positives = 47/187 (25%), Gaps = 33/187 (17%)

Query: 150 VHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAF 209
              L+   P  A+        T     +    +  S      GG  F             
Sbjct: 18  FDTLNDMAPENAIYLNESTSTTAQMWQRLNMRNPGSYYFCAAGGLGFALPAAI------- 70

Query: 210 TSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMS 269
                         +         G  +       L  AA + +P +FV+ NN     + 
Sbjct: 71  ---------GVQLAEPERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIMNNGTYGALR 121

Query: 270 HL-----------RATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGP 318
                                      +G+     D ++ LK       +++ A   +GP
Sbjct: 122 WFAGVLEAENVPGLDVPGIDFRALAKGYGVQALKADNLEQLK------GSLQEALSAKGP 175

Query: 319 TLVECET 325
            L+E  T
Sbjct: 176 VLIEVST 182

>d2ieaa2 c.36.1.10 (A:56-470) Pyruvate dehydrogenase E1 component, PP module {Escherichia coli [TaxId: 562]} Length = 415

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: TK-like PP module
domain: Pyruvate dehydrogenase E1 component, PP module
species: Escherichia coli [TaxId: 562]

 Score = 45.2 bits (106), Expect = 1e-05
 Identities = 29/198 (14%), Positives = 55/198 (27%), Gaps = 14/198 (7%)

Query: 148 DHVHALSKGVPARAVMSELFG--------KATGCCRGQGGSMHMFSKEHNLLGGFAFIGE 199
           D V+      P     + L G               G G S +   K             
Sbjct: 80  DLVYFQGHISPGVYARAFLEGRLTQEQLDNFRQEVHGNGLSSYPHPKLM-PEFWQFPTVS 138

Query: 200 GIPVATGAAFTSKYRREVLKEADC---DHVTLAFFGDGTCNNGQFFECLNMAALWKL-PI 255
                 GA + +K+ + +              AF GDG  +  +    + +A   KL  +
Sbjct: 139 MGLGPIGAIYQAKFLKYLEHRGLKDTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNL 198

Query: 256 VFVVENNLWAI-GMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARR 314
           VFV+  NL  + G          ++       G     V              + +  + 
Sbjct: 199 VFVINCNLQRLDGPVTGNGKIINELEGIFEGAGWNVIKVMWGSRWDELLRKDTSGKLIQL 258

Query: 315 GEGPTLVECETYRFRGHS 332
                  + +T++ +  +
Sbjct: 259 MNETVDGDYQTFKSKDGA 276

>d2djia3 c.36.1.9 (A:364-592) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]} Length = 229

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Pyruvate oxidase
species: Aerococcus viridans [TaxId: 1377]

 Score = 39.9 bits (92), Expect = 2e-04
 Identities = 38/237 (16%), Positives = 71/237 (29%), Gaps = 42/237 (17%)

Query: 150 VHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLL--GGFAFIGEGIPVATGA 207
            +A++      A+ S       G            + ++       FA +G  IP   GA
Sbjct: 9   YNAINNHADEDAIYSI----DVGNSTQTSIRHLHMTPKNMWRTSPLFATMGIAIPGGLGA 64

Query: 208 AFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIG 267
                                 +   G       +  +     + +P++ VV +N     
Sbjct: 65  KN-------------TYPDRQVWNIIGDGAFSMTYPDVVTNVRYNMPVINVVFSNTEYAF 111

Query: 268 MSHL----------RATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEG 317
           + +              +D    K   A G  GF V    +  +  V  EA+   + G  
Sbjct: 112 IKNKYEDTNKNLFGVDFTDVDYAKIAEAQGAKGFTVS--RIEDMDRVMAEAVAANKAG-H 168

Query: 318 PTLVECETYRFRGH---------SLADPDELRDPAEKARYAARDPI-TALKKYLIES 364
             +++C+  + R            L   DE++   E+   A   P    L+   +ES
Sbjct: 169 TVVIDCKITQDRPIPVETLKLDSKLYSEDEIKAYKERYEAANLVPFREYLEAEGLES 225

>d1ybha3 c.36.1.9 (A:460-667) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} Length = 208

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Acetohydroxyacid synthase catalytic subunit
species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]

 Score = 37.9 bits (87), Expect = 0.001
 Identities = 37/214 (17%), Positives = 62/214 (28%), Gaps = 53/214 (24%)

Query: 150 VHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLG--GFAFIGEGIPVATGA 207
           +  L +    +A++S       G  +      + + K    L   G   +G G+P A GA
Sbjct: 9   IKVLDELTDGKAIIST----GVGQHQMWAAQFYNYKKPRQWLSSGGLGAMGFGLPAAIGA 64

Query: 208 AFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA-- 265
           +  +     V              GDG+       + L    +  LP+  ++ NN     
Sbjct: 65  SVANPDAIVV-----------DIDGDGSFI--MNVQELATIRVENLPVKVLLLNNQHLGM 111

Query: 266 -----------------IGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEA 308
                            +G         P +     A G+P   V     L+      EA
Sbjct: 112 VMQWEDRFYKANRAHTFLGDPAQEDEIFPNMLLFAAACGIPAARVTKKADLR------EA 165

Query: 309 IERARRGEGPTLVECETYRFRGHSLADPDELRDP 342
           I+      GP L++               E   P
Sbjct: 166 IQTMLDTPGPYLLDVIC---------PHQEHVLP 190

>d1ovma3 c.36.1.9 (A:356-551) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]} Length = 196

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Indole-3-pyruvate decarboxylase
species: Enterobacter cloacae [TaxId: 550]

 Score = 37.2 bits (85), Expect = 0.002
 Identities = 21/181 (11%), Positives = 50/181 (27%), Gaps = 25/181 (13%)

Query: 150 VHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLL-GGFAFIGEGIPVATGAA 208
              L   +    ++        G        + + +  + ++   +  IG  +  A GA 
Sbjct: 11  WRTLQTFIRPGDIILA----DQGTSAFGAIDLRLPADVNFIVQPLWGSIGYTLAAAFGAQ 66

Query: 209 FTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGM 268
                         C +  +              E  +M    + PI+ V+ N  + +  
Sbjct: 67  TA------------CPNRRVIVLTGDGAAQLTIQELGSMLRDKQHPIILVLNNEGYTVER 114

Query: 269 SHLRATS------DPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVE 322
           +   A                 A  +         V +  ++  + +E+    E  +L+E
Sbjct: 115 AIHGAEQRYNDIALWNWTHIPQALSLDPQSE-CWRVSEAEQL-ADVLEKVAHHERLSLIE 172

Query: 323 C 323
            
Sbjct: 173 V 173

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	434
d1umda_	362	Branched-chain alpha-keto acid dehydrogenase, PP m	100.0
d1qs0a_	407	2-oxoisovalerate dehydrogenase (E1B), PP module {P	100.0
d2bfda1	395	Branched-chain alpha-keto acid dehydrogenase, PP m	100.0
d2ozla1	361	E1-beta subunit of pyruvate dehydrogenase (PP modu	100.0
d1w85a_	365	Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus st	100.0
d2r8oa2	331	Transketolase (TK), PP module {Escherichia coli [T	99.87
d2djia3	229	Pyruvate oxidase {Aerococcus viridans [TaxId: 1377	99.86
d1r9ja2	336	Transketolase (TK), PP module {Leishmania mexicana	99.86
d1gpua1	335	Transketolase (TK), PP module {Baker's yeast (Sacc	99.85
d2ez9a3	228	Pyruvate oxidase {Lactobacillus plantarum [TaxId:	99.84
d1itza1	338	Transketolase (TK), PP module {Maize (Zea mays) [T	99.81
d1ybha3	208	Acetohydroxyacid synthase catalytic subunit {Thale	99.79
d1q6za3	183	Benzoylformate decarboxylase {Pseudomonas putida [	99.79
d2ihta3	198	Carboxyethylarginine synthase {Streptomyces clavul	99.76
d1ozha3	192	Catabolic acetolactate synthase {Klebsiella pneumo	99.75
d1t9ba3	227	Acetohydroxyacid synthase catalytic subunit {Baker	99.74
d1zpda3	204	Pyruvate decarboxylase {Zymomonas mobilis [TaxId:	99.72
d1ovma3	196	Indole-3-pyruvate decarboxylase {Enterobacter cloa	99.72
d2ieaa2	415	Pyruvate dehydrogenase E1 component, PP module {Es	99.72
d1pvda3	196	Pyruvate decarboxylase {Baker's yeast (Saccharomyc	99.71
d2ji7a3	183	Oxalyl-CoA decarboxylase {Oxalobacter formigenes [	99.69
d2c42a2	447	Pyruvate-ferredoxin oxidoreductase, PFOR, domains	98.71
d2djia2	184	Pyruvate oxidase {Aerococcus viridans [TaxId: 1377	95.29
d2ihta2	186	Carboxyethylarginine synthase {Streptomyces clavul	95.28
d1ozha2	181	Catabolic acetolactate synthase {Klebsiella pneumo	95.14
d1zpda2	186	Pyruvate decarboxylase {Zymomonas mobilis [TaxId:	95.09
d2ez9a2	174	Pyruvate oxidase {Lactobacillus plantarum [TaxId:	95.04
d2ji7a2	188	Oxalyl-CoA decarboxylase {Oxalobacter formigenes [	94.72
d1t9ba2	175	Acetohydroxyacid synthase catalytic subunit {Baker	94.4
d1pvda2	180	Pyruvate decarboxylase {Baker's yeast (Saccharomyc	94.29
d1q6za2	180	Benzoylformate decarboxylase {Pseudomonas putida [	94.23
d2c42a1	257	Pyruvate-ferredoxin oxidoreductase, PFOR, domain I	94.11
d1ybha2	195	Acetohydroxyacid synthase catalytic subunit {Thale	94.08
d1ovma2	178	Indole-3-pyruvate decarboxylase {Enterobacter cloa	86.68
d1gpua2	197	Transketolase (TK), Pyr module {Baker's yeast (Sac	81.17

>d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid dehydrogenase, PP module {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: Branched-chain alpha-keto acid dehydrogenase, PP module
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.3e-79  Score=621.74  Aligned_cols=325  Identities=34%  Similarity=0.529  Sum_probs=315.9

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcCCC-CEEEccCcchHHHHHcCCC
Q 013928           80 SNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKE-DSVVSTYRDHVHALSKGVP  158 (434)
Q Consensus        80 ~~~~~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~~~-D~v~~~yR~~~~~La~G~~  158 (434)
                      ..+.+|+|+++++|+.|+++|.||+++.+++++|++ ||+|++.||||+++|++.+|+++ ||+|++||+|+++|++|++
T Consensus        24 ~~~~ls~e~l~~~yr~M~~~R~~ee~~~~l~~~g~~-~~~~~~~GqEA~~vg~~~al~~~~D~~~~~yR~h~~~la~G~~  102 (362)
T d1umda_          24 FPLDLEGEKLRRLYRDMLAARMLDERYTILIRTGKT-SFIAPAAGHEAAQVAIAHAIRPGFDWVFPYYRDHGLALALGIP  102 (362)
T ss_dssp             SCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC-SCCCCCTTCHHHHHHHHHHSCTTTSEEECCTTTHHHHHHHTCC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc-ceeeCCCCHHHHHHHHHHHcCCCCCeEEeccccHHHHHHHHhh
Confidence            457899999999999999999999999999999999 89999999999999999999986 9999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCccCCCCCcccccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCcccccc
Q 013928          159 ARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNN  238 (434)
Q Consensus       159 ~~~i~~el~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~  238 (434)
                      +.++|+|++|+.+|+++|++|+||+++++.++.+.++++|.++|+|+|+|++.|++       +.+.+++|++|||++++
T Consensus       103 ~~~~~ae~~gk~~g~~~Grggs~H~~~~~~~~~~~~~ivg~~~p~a~G~A~a~k~~-------~~~~v~v~~~GDGa~~e  175 (362)
T d1umda_         103 LKELLGQMLATKADPNKGRQMPEHPGSKALNFFTVASPIASHVPPAAGAAISMKLL-------RTGQVAVCTFGDGATSE  175 (362)
T ss_dssp             HHHHHHHHHTBTTCTTTTCSCSSCCCBTTTTBCCCCSSTTTTHHHHHHHHHHHHHT-------TCCCCEEEEEETGGGGS
T ss_pred             HHHHHHHHhcccCCCcccccccccccccccCcccccccccccchHHHHHHHhhhcc-------cccceeeeeccCCcccC
Confidence            99999999999999999999999999999999999999999999999999999988       56889999999999999


Q ss_pred             chHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCC
Q 013928          239 GQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGP  318 (434)
Q Consensus       239 G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP  318 (434)
                      |.|||+||+|+.|+|||||||+||+|+++++...+++.+++.+++.+||+++++|||+|+.+|++++++|++++|+++||
T Consensus       176 G~f~Ealn~A~~~~lPvifv~eNN~~aist~~~~~~~~~~~~~~a~~~gi~~~~vDGnDv~~v~~a~~~Ai~~~R~g~gP  255 (362)
T d1umda_         176 GDWYAGINFAAVQGAPAVFIAENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERARRGEGP  255 (362)
T ss_dssp             HHHHHHHHHHHHTTCSEEEEEEECSEETTEEHHHHCSSSCSGGGGGGTTSCEEEEETTCHHHHHHHHHHHHHHHHTTCCC
T ss_pred             CchHHHHHHhhhccCCeeeeeeecccccccccccccccchhhhhhhhheeeeeEeccchHHHHHHHHHHHHHHHHhcCCC
Confidence            99999999999999999999999999999999999888899999999999999999999999999999999999999999


Q ss_pred             EEEEEEEecCCCCCCCCCC-CCCCHHHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 013928          319 TLVECETYRFRGHSLADPD-ELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPP  397 (434)
Q Consensus       319 ~lIev~t~R~~gHs~~D~~-~yR~~~e~~~~~~~DPl~~~~~~L~~~G~~te~e~~~i~~e~~~~v~~a~~~A~~~p~p~  397 (434)
                      +|||++|||+.||+.+|++ .||+++|++.|+++|||.+++++|++.|+++++++++|+++++++|++++++|+++|.|+
T Consensus       256 ~lIE~~tyR~~gHs~~Dd~~~YR~~~Ei~~w~~~DPi~~~~~~L~~~g~~se~e~~~i~~ei~~~V~~a~~~A~~~p~P~  335 (362)
T d1umda_         256 SLVELRVYRYGPHSSADDDSRYRPKEEVAFWRKKDPIPRFRRFLEARGLWNEEWEEDVREEIRAELERGLKEAEEAGPVP  335 (362)
T ss_dssp             EEEEEECCCCSCSSTTCCGGGTSCHHHHHHHHTTCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCBCC
T ss_pred             EEEEcccccccCCCccccchhhcchhhhHHHhcCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            9999999999999999876 599999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhcccCCCCCC
Q 013928          398 RSQLLENVFADPKGF  412 (434)
Q Consensus       398 ~~~l~~~vya~~~~~  412 (434)
                      +++++++||+++++.
T Consensus       336 ~~~l~~~VY~~~~~~  350 (362)
T d1umda_         336 PEWMFEDVFAEKPWH  350 (362)
T ss_dssp             GGGGGTTSSSSCCHH
T ss_pred             HHHHHhcccCCCChh
Confidence            999999999998753

>d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP module {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: 2-oxoisovalerate dehydrogenase (E1B), PP module
species: Pseudomonas putida [TaxId: 303]

Probab=100.00  E-value=4.4e-78  Score=616.77  Aligned_cols=325  Identities=26%  Similarity=0.367  Sum_probs=311.5

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcCCCCEEEccCcchHHHHHcCCCH
Q 013928           80 SNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPA  159 (434)
Q Consensus        80 ~~~~~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~~~D~v~~~yR~~~~~La~G~~~  159 (434)
                      +.+.+++|+|+++||.|+++|.||+++.++++||++ ||||++.||||+++|++.+|+++||+|++||+|+++|++|+++
T Consensus        67 ~~~~l~~e~l~~~yr~M~~~R~~d~~~~~l~rqG~i-~~~~~~~GqEA~~vg~~~aL~~~D~~f~~yR~~g~~larG~~~  145 (407)
T d1qs0a_          67 WAEDIDPQILRQGMRAMLKTRIFDSRMVVAQRQKKM-SFYMQSLGEEAIGSGQALALNRTDMCFPTYRQQSILMARDVSL  145 (407)
T ss_dssp             GGSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-SCCCCCTTTHHHHHHHHHHSCTTSEEECCSSCHHHHHHTTCCH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-cccCCCCChHHHHHHHHHhCCCCCEEEecccCHHHHHHHHhhH
Confidence            567899999999999999999999999999999999 8999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCccCCCCCcccccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccc
Q 013928          160 RAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNG  239 (434)
Q Consensus       160 ~~i~~el~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G  239 (434)
                      .++|+|++|+.+|+++|++|++|+++++.++.+.++++|.++|.|+|+|+|.|++       +.+.+|+|++|||++++|
T Consensus       146 ~~~~~e~~g~~~g~~~Gr~~~~h~~~~~~~~~~~s~~vg~q~p~AvG~A~a~k~~-------~~~~v~v~~~GDGa~~eG  218 (407)
T d1qs0a_         146 VEMICQLLSNERDPLKGRQLPIMYSVREAGFFTISGNLATQFVQAVGWAMASAIK-------GDTKIASAWIGDGATAES  218 (407)
T ss_dssp             HHHHHHHHTCTTCTTTTCSCTTCCCBGGGTBCCCCSSSSHHHHHHHHHHHHHHHT-------TCCCCEEEEEETGGGGSH
T ss_pred             HHHHHHHhhccCCCCCCCCccccccccccceeccccccccccchhhhhHHHHhhc-------cCcceecccccccccccc
Confidence            9999999999999999999999999999999999999999999999999999988       568899999999999999


Q ss_pred             hHHHHHHHHHHcCCCeEEEEEcCCccCccccccccc-CchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCC
Q 013928          240 QFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATS-DPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGP  318 (434)
Q Consensus       240 ~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~-~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP  318 (434)
                      .|||+||+|+.|+|||||||+||+|+|+|+...++. ..++++++.+||+++++|||+|+.+|++++++|++++|+++||
T Consensus       219 ~f~EalN~A~~~~lPvifv~eNN~~aist~~~~~~~~~~~~~~ra~~~Gi~~~~VDGnD~~avy~a~~~A~e~aR~g~gP  298 (407)
T d1qs0a_         219 DFHTALTFAHVYRAPVILNVVNNQWAISTFQAIAGGESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWAAERARRGLGP  298 (407)
T ss_dssp             HHHHHHHHHHHHTCCEEEEEEECSEETTEEGGGGTTTTCCSTHHHHHTTCEEEEEETTCHHHHHHHHHHHHHHHHTTSCC
T ss_pred             hHHHHHHHHhccCcceEEEEEEecccccccchhhhccchhHHHHHHhcCcceEEeccccHHHHHHHHHHHHHHHhcCCCc
Confidence            999999999999999999999999999998776654 4679999999999999999999999999999999999999999


Q ss_pred             EEEEEEEecCCCCCCC-CCCCCCCHHHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhh-----
Q 013928          319 TLVECETYRFRGHSLA-DPDELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADE-----  392 (434)
Q Consensus       319 ~lIev~t~R~~gHs~~-D~~~yR~~~e~~~~~~~DPl~~~~~~L~~~G~~te~e~~~i~~e~~~~v~~a~~~A~~-----  392 (434)
                      +|||++|||+.||+++ |+..||+++|++.|+++|||.+++++|++.|+|+++++++|+++++++|++|+++|++     
T Consensus       299 ~lIE~~TyR~~gHs~sDD~~~YR~~~E~~~w~~~DPI~rl~~~Li~~g~~se~e~~~i~~ei~~eV~~A~~~Ae~~~~~~  378 (407)
T d1qs0a_         299 SLIEWVTYRAGPHSTSDDPSKYRPADDWSHFPLGDPIARLKQHLIKIGHWSEEEHQATTAEFEAAVIAAQKEAEQYGTLA  378 (407)
T ss_dssp             EEEEEECCCCSCSSTTCCGGGTSCTTHHHHCTTCCHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHTTCCSS
T ss_pred             eEEEEeeecCCCCCccccccccCCHHHHHHHHhCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            9999999999999998 5578999999999999999999999999999999999999999999999999999975     


Q ss_pred             -CCCCCcchhhhcccCCCCCC
Q 013928          393 -SAPPPRSQLLENVFADPKGF  412 (434)
Q Consensus       393 -~p~p~~~~l~~~vya~~~~~  412 (434)
                       +|.|+++++|++||+++++.
T Consensus       379 ~~p~P~~~~lf~~VY~e~p~~  399 (407)
T d1qs0a_         379 NGHIPSAASMFEDVYKEMPDH  399 (407)
T ss_dssp             SCCCCCSSGGGSSSSSSCCHH
T ss_pred             cCCCcCHHHHHhhhccCCCHH
Confidence             68899999999999988753

>d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid dehydrogenase, PP module {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: Branched-chain alpha-keto acid dehydrogenase, PP module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.2e-78  Score=615.29  Aligned_cols=325  Identities=26%  Similarity=0.415  Sum_probs=295.1

Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcCCCCEEEccCcchHHHHHcCCC
Q 013928           79 ISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVP  158 (434)
Q Consensus        79 ~~~~~~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~~~D~v~~~yR~~~~~La~G~~  158 (434)
                      ...+.+|+|+++++||.|+++|.||+++.+++++|++.|++ ++.||||+++|++.+|+++||+|++||+|+++|++|++
T Consensus        42 ~~~~~ls~e~l~~~Yr~M~~~R~~e~~~~~l~~~G~i~~~~-~~~GqEA~~vg~~~al~~~D~~~~~yR~h~~~la~G~~  120 (395)
T d2bfda1          42 SEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYM-TNYGEEGTHVGSAAALDNTDLVFGQAREAGVLMYRDYP  120 (395)
T ss_dssp             GGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCC-CCTTCHHHHHHHHHTSCTTSEEECCSCCHHHHHHTTCC
T ss_pred             cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccc-CCCChHHHHHHHHHHcCCCCeeccccchhHhhhhhhCC
Confidence            45688999999999999999999999999999999997655 57899999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCccCCCCCcccccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCcccccc
Q 013928          159 ARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNN  238 (434)
Q Consensus       159 ~~~i~~el~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~  238 (434)
                      ++.+|+|++|+.+++++|++|+||+++++.++.+.++++|.++|+|+|+|+|.|++       +.+++++|++|||++++
T Consensus       121 ~~~~~ael~g~~~g~~~Grggs~H~~~~~~~~~~~~~ivg~~~p~A~G~A~a~k~~-------~~~~v~v~~~GDGa~~e  193 (395)
T d2bfda1         121 LELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRA-------NANRVVICYFGEGAASE  193 (395)
T ss_dssp             HHHHHHHHHTCTTCTTTTCSCSSCCCBTTTTBCCCCSSTTTHHHHHHHHHHHHHHH-------TCCCCEEEEEETTGGGS
T ss_pred             HHHHHHHHhhcccCccccccccccccccccccccccccccccccHHHHHHHHhhhc-------CcccccccccCCCCccc
Confidence            99999999999999999999999999999999999999999999999999999988       56899999999999999


Q ss_pred             chHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCC
Q 013928          239 GQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGP  318 (434)
Q Consensus       239 G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP  318 (434)
                      |.|||+||+|+.|+|||||||+||+|+++|+...++...++++++++||+++++|||+|+.+|++++++|++++|+++||
T Consensus       194 G~f~EalN~A~~~~lPvlfv~eNN~yaist~~~~~~~~~~i~~ra~~~gi~~~~vDG~Dv~aV~~a~~~A~~~~R~g~gP  273 (395)
T d2bfda1         194 GDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQP  273 (395)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSSSTTGGGTGGGTCEEEEEETTCHHHHHHHHHHHHHHHHHHTCC
T ss_pred             hhHHHHHHHHhhcCCceEEEEEecccccccccchhhcchhHHHhhhccccceeEEecCcHHHHHHHHHHhhhhhhccCCc
Confidence            99999999999999999999999999999999999988999999999999999999999999999999999999999999


Q ss_pred             EEEEEEEecCCCCCCCC-CCCCCCHHHHHHHhcCC-hHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 013928          319 TLVECETYRFRGHSLAD-PDELRDPAEKARYAARD-PITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPP  396 (434)
Q Consensus       319 ~lIev~t~R~~gHs~~D-~~~yR~~~e~~~~~~~D-Pl~~~~~~L~~~G~~te~e~~~i~~e~~~~v~~a~~~A~~~p~p  396 (434)
                      +|||+.|||+.+|+.+| +..||+++|++.|+++| ||.+++++|++.|+++++++++|+++++++|++|+++|+++|.|
T Consensus       274 ~lIE~~TyR~~~Hs~~DD~~~YR~~~Ei~~w~k~DdPi~~~~~~Li~~g~~s~ee~~~i~~e~~~eV~~A~~~A~~~p~P  353 (395)
T d2bfda1         274 FLIEAMTYRIGHASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKP  353 (395)
T ss_dssp             EEEEEECCCCC--CC-------------------CCHHHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHSCBC
T ss_pred             eEEEEeeecCCCCCCcCCcccccCHHHHHHHHhcCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            99999999999998885 56899999999999886 99999999999999999999999999999999999999999999


Q ss_pred             CcchhhhcccCCCCC
Q 013928          397 PRSQLLENVFADPKG  411 (434)
Q Consensus       397 ~~~~l~~~vya~~~~  411 (434)
                      +++++|+|||++++.
T Consensus       354 ~~~~l~~~VYae~p~  368 (395)
T d2bfda1         354 NPNLLFSDVYQEMPA  368 (395)
T ss_dssp             CGGGGSTTSSSSCCH
T ss_pred             CHHHHHhhcccCCCH
Confidence            999999999998754

>d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate dehydrogenase (PP module) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: E1-beta subunit of pyruvate dehydrogenase (PP module)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-76  Score=599.00  Aligned_cols=322  Identities=39%  Similarity=0.717  Sum_probs=305.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcCCCCEEEccCcchHHHHHcCCCHH
Q 013928           81 NLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPAR  160 (434)
Q Consensus        81 ~~~~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~~~D~v~~~yR~~~~~La~G~~~~  160 (434)
                      ...+++|+++++||.|+++|.||+++.+++++|++.||+|++.||||+++|++.+|+++||++++||+|+++|++|+++.
T Consensus        24 ~~~lske~ll~~yr~M~~~R~~e~~~~~l~~~g~i~g~~h~~~GqEa~~vg~~~~l~~~D~~~~~yR~~~~~la~G~~~~  103 (361)
T d2ozla1          24 TTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRAHGFTFTRGLSVR  103 (361)
T ss_dssp             EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCCCCCTTCHHHHHHHHHTSCTTSEEECCSCCHHHHHHTTCCHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcccccCCCCHHHHHHHHHHhCCccCEecccccchheeeeecccch
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCccCCCCCcccccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccch
Q 013928          161 AVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQ  240 (434)
Q Consensus       161 ~i~~el~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~  240 (434)
                      ++|+|++|+.+++++|++|++|++++  ++.+.++++|.++|+|+|+|+|.|++       +.+.+|+|++|||++++|.
T Consensus       104 ~~~ae~~gk~~g~~~G~~~~~h~~~~--~~~~~~~ivg~~~p~A~G~A~a~k~~-------~~~~v~~~~~GDGa~~eG~  174 (361)
T d2ozla1         104 EILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVPLGAGIALACKYN-------GKDEVCLTLYGDGAANQGQ  174 (361)
T ss_dssp             HHHHHHTTCTTSTTTTSSCTTCCCBT--TBCCCCCSTTTHHHHHHHHHHHHHHH-------TCCCCEEEEEETTGGGCHH
T ss_pred             hhhhhccCCccccccccccccccccc--cccCccccccccchhHHHHHHHhhhc-------cCCCeEEEEecCCCccCcc
Confidence            99999999999999999999999865  78899999999999999999999988       5689999999999999999


Q ss_pred             HHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEE
Q 013928          241 FFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTL  320 (434)
Q Consensus       241 ~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~l  320 (434)
                      |||+||+|+.|+|||||||+||+|+++|+...++...++..+  ++|+++++|||+|+++|++++++|++++|+++||+|
T Consensus       175 f~Ealn~A~~~~lPvifv~eNN~yaist~~~~~~~~~~~~~~--~~~~~~~~vdGnD~~av~~a~~~A~~~~R~g~gP~l  252 (361)
T d2ozla1         175 IFEAYNMAALWKLPCIFICENNRYGMGTSVERAAASTDYYKR--GDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPIL  252 (361)
T ss_dssp             HHHHHHHHHHTTCCEEEEEEECSEETTEEHHHHCSCCCGGGT--TTTSCEEEEETTCHHHHHHHHHHHHHHHHTTCCCEE
T ss_pred             hhhhhhhhhhccCceEEEEEeCCcccCCCchhcccccccccc--ccccceEEeccCCchHHHHHHHHHHHHHhccCCCEE
Confidence            999999999999999999999999999999888777766554  678999999999999999999999999999999999


Q ss_pred             EEEEEecCCCCCCCCCC-CCCCHHHHHHHh-cCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhCCCCCc
Q 013928          321 VECETYRFRGHSLADPD-ELRDPAEKARYA-ARDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPPR  398 (434)
Q Consensus       321 Iev~t~R~~gHs~~D~~-~yR~~~e~~~~~-~~DPl~~~~~~L~~~G~~te~e~~~i~~e~~~~v~~a~~~A~~~p~p~~  398 (434)
                      ||+.|||++||+.+|++ .||+++|++.|+ ++|||.+++++|++.|+++++++++|+++++++|++|+++|+++|.|++
T Consensus       253 iE~~TyR~~gHs~~D~~~~YR~~~Ei~~~~~k~DPi~~~~~~Li~~g~~se~e~~~i~~ei~~~V~~A~~~A~~sp~P~~  332 (361)
T d2ozla1         253 MELQTYRYHGHEMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQFATADPEPPL  332 (361)
T ss_dssp             EEEECCCSSCSSTTCCSCSSSCHHHHHHHHHHHCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHSCCCCG
T ss_pred             EEEeeecCCCCcccccccccCCHHHHHhhhhcCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCH
Confidence            99999999999999976 699999999886 5699999999999999999999999999999999999999999999999


Q ss_pred             chhhhcccCCCCCCC
Q 013928          399 SQLLENVFADPKGFG  413 (434)
Q Consensus       399 ~~l~~~vya~~~~~~  413 (434)
                      ++++++||++.+...
T Consensus       333 ~~l~~~VYa~~~p~~  347 (361)
T d2ozla1         333 EELGYHIYSSDPPFE  347 (361)
T ss_dssp             GGTTCSSSSSCCCEE
T ss_pred             HHHHhcccCCCChHH
Confidence            999999998766543

>d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: Pyruvate dehydrogenase E1-alpha, PdhA
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=9.6e-75  Score=585.98  Aligned_cols=315  Identities=30%  Similarity=0.449  Sum_probs=294.5

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecccccCCCChHHHHHHHHHhcCCCCEEEccCcchHHHHHcCCCH
Q 013928           80 SNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPA  159 (434)
Q Consensus        80 ~~~~~s~e~ll~ly~~M~~~R~fe~~~~~~~~~gk~~G~~h~~~GqEa~~~g~~~~L~~~D~v~~~yR~~~~~La~G~~~  159 (434)
                      ..+.+|+|+|+++||.|+++|.||+++.+++++|++ ||+|++.||||+++|++.+|+++||++++||+|+++|++|+++
T Consensus        34 ~~p~ls~e~l~~~yr~M~l~R~~e~~~~~l~~qG~i-g~~h~~~GqEa~~vg~~~~l~~~D~i~~~yR~hg~~la~G~~~  112 (365)
T d1w85a_          34 AMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRL-GFYAPTAGQEASQIASHFALEKEDFILPGYRDVPQIIWHGLPL  112 (365)
T ss_dssp             GCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC-CSCCCCTTCHHHHHHHHHTCCTTCEEECCSSCHHHHHHTTCCH
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc-ccccCCCChHHHHHHHHHhCCCcCEeeecccchheeeecCCCH
Confidence            346799999999999999999999999999999999 9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCccCCCCCcccccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccc
Q 013928          160 RAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNG  239 (434)
Q Consensus       160 ~~i~~el~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G  239 (434)
                      .++|.+++|+..+...+         ...++.+.++++|.++|.|+|+|+|.|++       +.+++|+|++|||++++|
T Consensus       113 ~~~~~~~~G~~~g~~~~---------~~~~~~~~~~ivG~~~p~AvG~A~a~k~~-------~~~~v~v~~~GDGa~~eG  176 (365)
T d1w85a_         113 YQAFLFSRGHFHGNQIP---------EGVNVLPPQIIIGAQYIQAAGVALGLKMR-------GKKAVAITYTGDGGTSQG  176 (365)
T ss_dssp             HHHHHHHHTCGGGGCCC---------TTCCBCCCCCSTTHHHHHHHHHHHHHHHT-------TCSCCEEEEEETGGGGSH
T ss_pred             HHHHHhhCCCCCccCCC---------CCceeeccccccCccccchhhHHhhhhhc-------ccCCceeeeccCCcccch
Confidence            99999999876544322         33567788899999999999999999988       578899999999999999


Q ss_pred             hHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCE
Q 013928          240 QFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPT  319 (434)
Q Consensus       240 ~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~  319 (434)
                      .|||+||+|+.|+|||||||+||+|+++|+...++...++.+++.+||+++++|||+|+.+|++++++|++++|.++||+
T Consensus       177 ~f~EalN~A~~~~lPvlfv~eNN~~aist~~~~~~~~~~~~~r~~~~Gi~~~~vDG~D~~~v~~a~~~A~~~~R~g~gP~  256 (365)
T d1w85a_         177 DFYEGINFAGAFKAPAIFVVQNNRFAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPT  256 (365)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSCSCSGGGGGGTTCCEEEEETTCHHHHHHHHHHHHHHHHTTSCCE
T ss_pred             hHHHHHHHhhhcccCceEEEEEecccccccccccccccchhhhcccccCceEEEecchhHHHHHHHHHHHHHhhcCCccE
Confidence            99999999999999999999999999999999998888999999999999999999999999999999999999999999


Q ss_pred             EEEEEEecCCCCCCCC--CCCCCCHHHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 013928          320 LVECETYRFRGHSLAD--PDELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPP  397 (434)
Q Consensus       320 lIev~t~R~~gHs~~D--~~~yR~~~e~~~~~~~DPl~~~~~~L~~~G~~te~e~~~i~~e~~~~v~~a~~~A~~~p~p~  397 (434)
                      |||++|||+.||+.+|  +..||+++|++.|.++|||.+++++|++.|++|++++++|+++++++|++|+++|+++|.|+
T Consensus       257 lie~~tyR~~gHs~~dd~~~~YR~~eEi~~w~~~DPI~~~~~~L~~~g~~~~~el~~i~~e~~~eV~~A~~~A~~sP~P~  336 (365)
T d1w85a_         257 LIETLCFRYGPHTMSGDDPTRYRSKELENEWAKKDPLVRFRKFLEAKGLWSEEEENNVIEQAKEEIKEAIKKADETPKQK  336 (365)
T ss_dssp             EEEEECCCSSCSCSSCC------CHHHHHHHHTTCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHTSCCCC
T ss_pred             EEEeecccccccCCcCCcccccCChHHHHHHHhCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            9999999999999876  45799999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhcccCCCCC
Q 013928          398 RSQLLENVFADPKG  411 (434)
Q Consensus       398 ~~~l~~~vya~~~~  411 (434)
                      ++++|++||+++++
T Consensus       337 ~~~l~~~Vy~e~p~  350 (365)
T d1w85a_         337 VTDLISIMFEELPF  350 (365)
T ss_dssp             HHHHHHTSCSSCCH
T ss_pred             HHHHHhhhccCCCH
Confidence            99999999998764

>d2r8oa2 c.36.1.10 (A:2-332) Transketolase (TK), PP module {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: TK-like PP module
domain: Transketolase (TK), PP module
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=2.5e-21  Score=191.66  Aligned_cols=157  Identities=24%  Similarity=0.238  Sum_probs=127.0

Q ss_pred             CcccCCcccccccchhhHHHHHHHHHHHhhhhh---cCCCceEEEEeCccccccchHHHHHHHHHHcCCC-eEEEEEcCC
Q 013928          188 HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKE---ADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNL  263 (434)
Q Consensus       188 ~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~---~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vI~VV~NN~  263 (434)
                      .++...+|+||+|++.|+|+|+|.|+++...+.   ...++.|+|++|||++++|++||++++|+.++|+ +|+|++||.
T Consensus       106 ~gve~stGsLG~Gl~~avG~Ala~k~~~~~~~~~~~~~~~~~v~~l~GDGel~EG~~wEA~~~A~~~kL~nLi~i~D~N~  185 (331)
T d2r8oa2         106 AGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNG  185 (331)
T ss_dssp             TTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECS
T ss_pred             CCcccCcCchhhhhHHHHHHHHHHHHHhhhhccccccccCceEEEecccccccccchhHhhhhcchhcccceeeHHhhhh
Confidence            467778999999999999999999988654332   2346789999999999999999999999999998 999999999


Q ss_pred             ccCcccccccccCchhhhccccCCCcEE-EEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCCCC-C----
Q 013928          264 WAIGMSHLRATSDPQIYKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADP-D----  337 (434)
Q Consensus       264 y~is~~~~~~~~~~d~~~~a~a~Gi~~~-~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~~D~-~----  337 (434)
                      +.+...+.... ..++.+++++|||.++ .+||+|..++.+|+..|.   ...++|++|.++|.+++|.+.... .    
T Consensus       186 ~~~~g~~~~~~-~~~~~~rf~afGw~vi~~~dghd~~~i~~A~~~a~---~~~~kP~~Ii~~TikGkG~~~~e~~~~~Hg  261 (331)
T d2r8oa2         186 ISIDGHVEGWF-TDDTAMRFEAYGWHVIRDIDGHDAASIKRAVEEAR---AVTDKPSLLMCKTIIGFGSPNKAGTHDSHG  261 (331)
T ss_dssp             EETTEEGGGTC-CCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHH---HCCSSCEEEEEECCTTTTCTTTTTSGGGTS
T ss_pred             hcccccccccc-chhHHHHHHHcCCeeecccccchHHHHHHHHHHHH---hhcCCCccceeeeeeecCCcccCCCchhhc
Confidence            88887765544 5788999999999998 589999988888665542   235789999999999999986533 2    


Q ss_pred             CCCCHHHHHHH
Q 013928          338 ELRDPAEKARY  348 (434)
Q Consensus       338 ~yR~~~e~~~~  348 (434)
                      ..-+++|++..
T Consensus       262 ~~l~~~e~~~a  272 (331)
T d2r8oa2         262 APLGDAEIALT  272 (331)
T ss_dssp             SCCCHHHHHHH
T ss_pred             CCCCHHHHHHH
Confidence            12345566543

>d2djia3 c.36.1.9 (A:364-592) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Pyruvate oxidase
species: Aerococcus viridans [TaxId: 1377]

Probab=99.86  E-value=2.1e-22  Score=189.98  Aligned_cols=191  Identities=20%  Similarity=0.268  Sum_probs=132.9

Q ss_pred             CCHHHHHHHHhcCCCCCc--cCCCCC-----cccccC--C--CcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCc
Q 013928          157 VPARAVMSELFGKATGCC--RGQGGS-----MHMFSK--E--HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH  225 (434)
Q Consensus       157 ~~~~~i~~el~g~~~g~~--~G~ggs-----~h~~~~--~--~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~  225 (434)
                      +++.+++.+|....+..+  ..+.|+     .+++..  .  ....+++|+||+++|.|+|+++|           .|++
T Consensus         3 l~~~~v~~~l~~~l~~d~iiv~d~G~~~~~~~~~~~~~~~~~~~~s~~~g~mG~~lp~aiGa~~a-----------~p~~   71 (229)
T d2djia3           3 LQFYQVYNAINNHADEDAIYSIDVGNSTQTSIRHLHMTPKNMWRTSPLFATMGIAIPGGLGAKNT-----------YPDR   71 (229)
T ss_dssp             CCHHHHHHHHHHHSCTTCEEEECSSHHHHGGGGTCCCCTTSEEECCCSSCCTTCHHHHHHHHHHH-----------CTTS
T ss_pred             CCHHHHHHHHHhhCCCCeEEEEcCcHhHHHHHHHcccCCCCeEEecCCcccccccchhhhhhhhh-----------cccc
Confidence            466777777766665542  233342     122211  1  22356789999999999999999           7899


Q ss_pred             eEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccc-----------cccCchhhhccccCCCcEEEEe
Q 013928          226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLR-----------ATSDPQIYKKGPAFGMPGFHVD  294 (434)
Q Consensus       226 ~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~-----------~~~~~d~~~~a~a~Gi~~~~Vd  294 (434)
                      .|||++|||+|+++  .++|.+|.++++|+++||.||+ +++.....           ....+|+.++|++||+++++|+
T Consensus        72 ~vv~i~GDGsf~m~--~~eL~ta~~~~lpi~iiV~nN~-~~~~i~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~  148 (229)
T d2djia3          72 QVWNIIGDGAFSMT--YPDVVTNVRYNMPVINVVFSNT-EYAFIKNKYEDTNKNLFGVDFTDVDYAKIAEAQGAKGFTVS  148 (229)
T ss_dssp             CEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECS-BCTHHHHHHHHHCSCCCSCBCCCCCHHHHHHHTTSEEEEEC
T ss_pred             cccccccccccccc--cchhhhhhcccCCceEEEeCCc-hhhhhhHHHHhhcCCCCcCcCCCCChhhhhhccCccEEEEe
Confidence            99999999999876  6789999999999877777775 33322111           1245899999999999999998


Q ss_pred             CCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCC----CCCCCCCCCCHHHHHHH----hcCChHHHHHHHHHHcCC
Q 013928          295 GMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGH----SLADPDELRDPAEKARY----AARDPITALKKYLIESSL  366 (434)
Q Consensus       295 G~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gH----s~~D~~~yR~~~e~~~~----~~~DPl~~~~~~L~~~G~  366 (434)
                        ++.++.+++++|++. +..++|+||||.+.+-...    ...| ....++.+++..    ...+ +..|+++|.++|.
T Consensus       149 --~~~el~~al~~A~~~-~~~~~p~lIev~v~~~~~~p~~~~~~~-~~~~~~~~~~~~~e~~~~~~-~~p~~~~le~~g~  223 (229)
T d2djia3         149 --RIEDMDRVMAEAVAA-NKAGHTVVIDCKITQDRPIPVETLKLD-SKLYSEDEIKAYKERYEAAN-LVPFREYLEAEGL  223 (229)
T ss_dssp             --BHHHHHHHHHHHHHH-HHTTCCEEEEEECCSCCCCCTTSCTTC-TTTSCHHHHHHHHHHTTCTT-CCCHHHHHHHTTC
T ss_pred             --cHHHhHHHHHHHHHh-cCCCCeEEEEEEeCCCCCCCccccccC-ccccCHHHHHHHHHhccccc-CCchHHHHHHcCc
Confidence              456999999999864 4456999999999875422    2223 334455555433    2222 3345788888875

>d1r9ja2 c.36.1.10 (A:1-336) Transketolase (TK), PP module {Leishmania mexicana mexicana [TaxId: 44270]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: TK-like PP module
domain: Transketolase (TK), PP module
species: Leishmania mexicana mexicana [TaxId: 44270]

Probab=99.86  E-value=3.5e-20  Score=183.77  Aligned_cols=157  Identities=21%  Similarity=0.206  Sum_probs=123.5

Q ss_pred             CcccCCcccccccchhhHHHHHHHHHHHhhhhh---cCCCceEEEEeCccccccchHHHHHHHHHHcCCC-eEEEEEcCC
Q 013928          188 HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKE---ADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNL  263 (434)
Q Consensus       188 ~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~---~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vI~VV~NN~  263 (434)
                      .++.-.+|+||+|++.|+|+|+|.++...+++.   +.-++.|+|++|||++++|++||++++|+.++|+ +|+|++||.
T Consensus       107 pgve~stGsLG~Gl~~avG~A~a~k~~~~~~~~~~~~~~~~~vy~~~GDGel~EG~~~EA~~~A~~~~L~nLi~i~D~N~  186 (336)
T d1r9ja2         107 PGVEVTTGPLGQGIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLMEGVCQEALSLAGHLALEKLIVIYDSNY  186 (336)
T ss_dssp             TTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHHTCTTEEEEEEECS
T ss_pred             CcccccccccccCcchhhHHHHHHHHHhccccccccccccceeEEeccchhhchHHHHHHHHHHHHhhcCCEEEEEeccc
Confidence            356667899999999999999999987655433   2346789999999999999999999999999998 899999998


Q ss_pred             ccCcccccccccCchhhhccccCCCcEEEEeCC--CHHHHHHHHHHHHHHHH-ccCCCEEEEEEEecCCCCCCCCCCC--
Q 013928          264 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGM--DVLKVREVAKEAIERAR-RGEGPTLVECETYRFRGHSLADPDE--  338 (434)
Q Consensus       264 y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~--D~~av~~a~~~Al~~ar-~~~gP~lIev~t~R~~gHs~~D~~~--  338 (434)
                      ..+...... ....++.+++++|||.++.|||+  |...+..++.    .++ ..++|++|.++|.+++|++..+...  
T Consensus       187 ~~idg~~~~-~~~~d~~~rf~afGW~vi~Vdgg~~d~~~~~~~~~----~a~~~~~kP~~Ii~kTiiG~G~~~e~~~~~H  261 (336)
T d1r9ja2         187 ISIDGSTSL-SFTEQCHQKYVAMGFHVIEVKNGDTDYEGLRKALA----EAKATKGKPKMIVQTTTIGFGSSKQGTEKVH  261 (336)
T ss_dssp             BCSSSBGGG-TCCCCHHHHHHHTTCEEEEESCTTTCHHHHHHHHH----HHHHCCSSCEEEEEECCTTTTSTTTTSGGGT
T ss_pred             ccccccccc-cchhHHHHHHHHhccceEEEecCchHHHHHHHHhh----hhhhccCCCccceEEEEEeecccccCCccee
Confidence            888765543 34578999999999999999874  4444444333    333 4568999999999999988665533  


Q ss_pred             --CCCHHHHHHHh
Q 013928          339 --LRDPAEKARYA  349 (434)
Q Consensus       339 --yR~~~e~~~~~  349 (434)
                        .-+.+|++..+
T Consensus       262 g~pl~~eEi~~~k  274 (336)
T d1r9ja2         262 GAPLGEEDIANIK  274 (336)
T ss_dssp             SSCCCHHHHHHHH
T ss_pred             ecCCCHHHHHHHH
Confidence              34677776654

>d1gpua1 c.36.1.10 (A:3-337) Transketolase (TK), PP module {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: TK-like PP module
domain: Transketolase (TK), PP module
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=3e-20  Score=184.12  Aligned_cols=143  Identities=22%  Similarity=0.270  Sum_probs=116.1

Q ss_pred             cccCCcccccccchhhHHHHHHHHHHHhhhhh---cCCCceEEEEeCccccccchHHHHHHHHHHcCCC-eEEEEEcCCc
Q 013928          189 NLLGGFAFIGEGIPVATGAAFTSKYRREVLKE---ADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLW  264 (434)
Q Consensus       189 ~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~---~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vI~VV~NN~y  264 (434)
                      ++...+|+||+|++.|+|+|+|.|+.+.+.+.   ...++.|+|++|||++++|++||++.+|+.++|. +|+|+++|++
T Consensus       108 gie~stGsLG~Gl~~avG~A~a~k~~~~~~~~~~~~~~~~~v~~l~GDGel~EG~~~EA~~~A~~~~L~NLi~i~D~N~~  187 (335)
T d1gpua1         108 GVEVTTGPLGQGISNAVGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYDDNKI  187 (335)
T ss_dssp             TCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSE
T ss_pred             CeEeCCCChhHHHHHHHHHHHHhHhhhcccccCCcCCCCCcEEEEecchhhchhhhhhhHhHhhhhccCCEEEEEecccc
Confidence            66778999999999999999999988755432   2457889999999999999999999999999997 9999999998


Q ss_pred             cCcccccccccCchhhhccccCCCcEEEEeCC--CHHHHHHHHHHHHHHHH-ccCCCEEEEEEEecCCCCCCCCC
Q 013928          265 AIGMSHLRATSDPQIYKKGPAFGMPGFHVDGM--DVLKVREVAKEAIERAR-RGEGPTLVECETYRFRGHSLADP  336 (434)
Q Consensus       265 ~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~--D~~av~~a~~~Al~~ar-~~~gP~lIev~t~R~~gHs~~D~  336 (434)
                      .+...+.... ..++.+++++|||.++.|||+  |...+..++.    .++ ..++|++|.++|.+++|....+.
T Consensus       188 ~~dg~~~~~~-~~~~~~~f~a~GW~vi~vdg~~~d~~~~~~~~~----~~~~~~~KPt~Iia~TikGkGs~~e~~  257 (335)
T d1gpua1         188 TIDGATSISF-DEDVAKRYEAYGWEVLYVENGNEDLAGIAKAIA----QAKLSKDKPTLIKMTTTIGYGSLHAGS  257 (335)
T ss_dssp             ETTEEGGGTC-CCCHHHHHHHHTCEEEEESCTTTCHHHHHHHHH----HHHHCTTSCEEEEEECCTTTTSTTTTS
T ss_pred             cccccccccc-cCCHHHHHHhCCCcEEEEcCCchhHHHHHHHHh----hhhcccCCCcceEEeeccCCcCcccCc
Confidence            8877665443 468999999999999999865  4444444333    333 45689999999999999655443

>d2ez9a3 c.36.1.9 (A:366-593) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Pyruvate oxidase
species: Lactobacillus plantarum [TaxId: 1590]

Probab=99.84  E-value=9.1e-22  Score=185.46  Aligned_cols=158  Identities=22%  Similarity=0.281  Sum_probs=112.2

Q ss_pred             cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccc
Q 013928          191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH  270 (434)
Q Consensus       191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~  270 (434)
                      .+++|+||+++|+|+|+++|           .|++.|||++|||+|+++  .++|.+|+++++|+++||.||+ +++...
T Consensus        51 ~~~~g~mG~glpaAiGa~la-----------~p~~~Vv~i~GDG~f~m~--~~EL~Ta~~~~lpi~~vV~NN~-~yg~i~  116 (228)
T d2ez9a3          51 SNLFATMGVGIPGAIAAKLN-----------YPERQVFNLAGDGGASMT--MQDLATQVQYHLPVINVVFTNC-QYGWIK  116 (228)
T ss_dssp             CCSSCCTTCHHHHHHHHHHH-----------CTTSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECS-BCHHHH
T ss_pred             ecccccccccchhhhhhhhh-----------hccceeEeecCCcccccc--chhhhhhccccCceEEEEeccc-cchhhh
Confidence            46789999999999999999           789999999999999886  7899999999999888888776 343322


Q ss_pred             cc------------cccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCC---CC
Q 013928          271 LR------------ATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSL---AD  335 (434)
Q Consensus       271 ~~------------~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~---~D  335 (434)
                      ..            ....+|+.++|++||+++++|+..  .++..++++|.  +...++|+|||+.+.+-...+.   ..
T Consensus       117 ~~q~~~~~~~~~~~~l~~~d~~~iA~a~G~~~~~v~~~--~el~~al~~a~--al~~~~p~lIev~vd~d~~~P~~~~~~  192 (228)
T d2ez9a3         117 DEQEDTNQNDFIGVEFNDIDFSKIADGVHMQAFRVNKI--EQLPDVFEQAK--AIAQHEPVLIDAVITGDRPLPAEKLRL  192 (228)
T ss_dssp             HHHHHHCSSCCCSSBCCCCCHHHHHHHTTCEEEEECBG--GGHHHHHHHHH--HHTTTSCEEEEEECCCCCCCCTTSCCC
T ss_pred             hhhhhcccCCcccccccCccHHhhccccccceEEeCCH--HHHHHHHHHHH--HHcCCCeEEEEEEECCCCcCCCcccCc
Confidence            11            124579999999999999999854  47777666653  3456899999999987553321   12


Q ss_pred             CCCCCCHHHHHHHhcC---ChHHHHHHHHHHcCC
Q 013928          336 PDELRDPAEKARYAAR---DPITALKKYLIESSL  366 (434)
Q Consensus       336 ~~~yR~~~e~~~~~~~---DPl~~~~~~L~~~G~  366 (434)
                      +.........+.+..+   .-++.+++.|.++|+
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~k~~~~  226 (228)
T d2ez9a3         193 DSAMSSAADIEAFKQRYEAQDLQPLSTYLKQFGL  226 (228)
T ss_dssp             CTTTSCHHHHHHHHHHHTCTTCCCHHHHHHHTTC
T ss_pred             CCCcCChhhHHHHhhHHHhhCCCcHHHHHHHhCC
Confidence            2233333333333221   112335666766664

>d1itza1 c.36.1.10 (A:10-347) Transketolase (TK), PP module {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: TK-like PP module
domain: Transketolase (TK), PP module
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.81  E-value=1.8e-18  Score=171.36  Aligned_cols=145  Identities=22%  Similarity=0.226  Sum_probs=118.3

Q ss_pred             CcccCCcccccccchhhHHHHHHHHHHHhhhhh---cCCCceEEEEeCccccccchHHHHHHHHHHcCCC-eEEEEEcCC
Q 013928          188 HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKE---ADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNL  263 (434)
Q Consensus       188 ~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~---~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vI~VV~NN~  263 (434)
                      .++...+|+||+|++.|+|+|+|.++.+...+.   ...++.|+|++|||++++|.+||++++|+.++|. +|+|+++|+
T Consensus       111 pgve~stGsLG~Gl~~avG~A~a~k~~~~~~~~~~~~~~~~~v~vl~GDGel~EG~~wEA~~~A~~~~L~NLi~i~D~N~  190 (338)
T d1itza1         111 PGVEVTTGPLGQGIANAVGLALAEKHLAARFNKPDSEIVDHYTYVILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDNH  190 (338)
T ss_dssp             TTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECS
T ss_pred             CCccccCCcHHhhHHHHHHHHHHHHHHhccccccccccccceEEEEeCccccchHHHHHHHhHhhhhhccceeeeehhhc
Confidence            366778999999999999999999987654332   2457789999999999999999999999999997 999999999


Q ss_pred             ccCcccccccccCchhhhccccCCCcEEEEeCC--CHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCCCC
Q 013928          264 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGM--DVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADP  336 (434)
Q Consensus       264 y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~--D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~~D~  336 (434)
                      +.+..... .....++.+++++|||.++.|++.  |..++..++..|.   ...++|++|.++|..++|.+....
T Consensus       191 ~~~dg~~~-~~~~~~~~~k~~a~Gw~vi~v~~g~~~~~~i~~a~~~a~---~~~~kPt~Iia~TikGkG~~~~e~  261 (338)
T d1itza1         191 ISIDGDTE-IAFTEDVSTRFEALGWHTIWVKNGNTGYDDIRAAIKEAK---AVTDKPTLIKVTTTIGFGSPNKAN  261 (338)
T ss_dssp             EETTEEGG-GTCCSCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHH---HCCSSCEEEEEECCTTTTCTTTTT
T ss_pred             cccccccc-cccCCCHHHHHHhcCCeEEEeeCCchhHHHHHHHHHHHH---HccCCCceeEeecCcccCcCccCC
Confidence            88876654 344568999999999999998653  5666666554442   245789999999999999886543

>d1ybha3 c.36.1.9 (A:460-667) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Acetohydroxyacid synthase catalytic subunit
species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]

Probab=99.79  E-value=3.3e-20  Score=172.24  Aligned_cols=120  Identities=24%  Similarity=0.369  Sum_probs=96.8

Q ss_pred             ccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCccc
Q 013928          190 LLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMS  269 (434)
Q Consensus       190 ~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~  269 (434)
                      ..+++++||+++|+|+|+++|           .|++.|||++|||+|++.  .++|.||+++++|+++||.||+ +++..
T Consensus        47 ~~~~~g~mG~glpaaiGa~~A-----------~p~~~Vi~i~GDGsf~m~--~~El~Ta~r~~lpi~iiV~NN~-~~g~i  112 (208)
T d1ybha3          47 SSGGLGAMGFGLPAAIGASVA-----------NPDAIVVDIDGDGSFIMN--VQELATIRVENLPVKVLLLNNQ-HLGMV  112 (208)
T ss_dssp             CCCSSCCTTCHHHHHHHHHHH-----------CTTSCEEEEEEHHHHHHT--TTHHHHHHHTTCCEEEEEEECS-BCHHH
T ss_pred             cccccccchhhhhhHHHHHhc-----------CCCCcEEEEccCCchhhh--hhhHHHHHHhCCCEEEEEEecc-ccccc
Confidence            356689999999999999999           789999999999999886  6789999999999888887775 44332


Q ss_pred             cc--------------------ccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCC
Q 013928          270 HL--------------------RATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR  329 (434)
Q Consensus       270 ~~--------------------~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~  329 (434)
                      ..                    .....+|+.++|++||+++++|+  ++.++.+++++|+    +.++|+|||+.+.+..
T Consensus       113 ~~~q~~~~~~~~~~~~~~~~~~~~~~~pd~~~iA~a~G~~~~~v~--~~~el~~al~~a~----~~~~p~lIeV~id~~~  186 (208)
T d1ybha3         113 MQWEDRFYKANRAHTFLGDPAQEDEIFPNMLLFAAACGIPAARVT--KKADLREAIQTML----DTPGPYLLDVICPHQE  186 (208)
T ss_dssp             HHHHHHHSTTCCCSCBCSCGGGTTSCSSCHHHHHHHTTCCEEEEC--BHHHHHHHHHHHH----HSSSCEEEEEECCTTC
T ss_pred             eehhhhcccccccccccccccccCCCCCCHHHhhccCCceEEEcC--CHHHHHHHHHHHH----hCCCCEEEEEEECCCC
Confidence            11                    11134689999999999999998  5667777666655    5689999999997643

>d1q6za3 c.36.1.9 (A:342-524) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Benzoylformate decarboxylase
species: Pseudomonas putida [TaxId: 303]

Probab=99.79  E-value=5.8e-20  Score=167.18  Aligned_cols=117  Identities=22%  Similarity=0.376  Sum_probs=92.5

Q ss_pred             ccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCcc
Q 013928          190 LLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGM  268 (434)
Q Consensus       190 ~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~  268 (434)
                      +.++.|.||+++|.|+|+++|           .++++|||++|||+++++  .++|.+++++++|+++||.||+ |++..
T Consensus        55 ~~~~~g~mG~~~p~AiGa~la-----------~p~~~vv~i~GDG~f~~~--~~el~ta~~~~lpv~~iV~nN~~~g~~~  121 (183)
T d1q6za3          55 YFCAAGGLGFALPAAIGVQLA-----------EPERQVIAVIGDGSANYS--ISALWTAAQYNIPTIFVIMNNGTYGALR  121 (183)
T ss_dssp             EECTTCCTTSHHHHHHHHHHH-----------CTTSCEEEEEEHHHHTTT--GGGHHHHHHHTCCCEEEEEECSBCHHHH
T ss_pred             ccccCCCcccchhHHHhhhhh-----------ccccceEEeccccccccc--cHHHHHHHHhCCCEEEEEEeccccchhh
Confidence            345578999999999999999           789999999999999886  7789999999999777666665 54321


Q ss_pred             cc----------cccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEE
Q 013928          269 SH----------LRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECET  325 (434)
Q Consensus       269 ~~----------~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t  325 (434)
                      ..          ....+.+|+.+++++||+++++|+  ++.++.+++++|    .+.++|+|||++|
T Consensus       122 ~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a----~~~~gp~lieV~T  182 (183)
T d1q6za3         122 WFAGVLEAENVPGLDVPGIDFRALAKGYGVQALKAD--NLEQLKGSLQEA----LSAKGPVLIEVST  182 (183)
T ss_dssp             HHHHHHTCCSCCSCBCCCCCHHHHHHHHTCEEEEES--SHHHHHHHHHHH----HTCSSCEEEEEEB
T ss_pred             hhhhcccccCcccccCCCccHHHHHHHcCCEEEEEC--CHHHHHHHHHHH----HhCCCcEEEEEEe
Confidence            10          011245789999999999999997  566777765555    4678999999988

>d2ihta3 c.36.1.9 (A:375-572) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Carboxyethylarginine synthase
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=99.76  E-value=1.4e-19  Score=166.72  Aligned_cols=118  Identities=24%  Similarity=0.225  Sum_probs=93.7

Q ss_pred             cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCccc
Q 013928          191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMS  269 (434)
Q Consensus       191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~  269 (434)
                      .+++|+||+++|.|+|+++|           .|++.|||++|||+++++  .++|.+++++++|+++||.||+ |++...
T Consensus        58 ~~~~g~mG~~lp~aiGa~~a-----------~p~~~Vv~i~GDGsf~~~--~~el~t~~~~~lpi~ivV~NN~~~g~i~~  124 (198)
T d2ihta3          58 SAGCSSFGYGIPAAIGAQMA-----------RPDQPTFLIAGDGGFHSN--SSDLETIARLNLPIVTVVVNNDTNGLIEL  124 (198)
T ss_dssp             CSSSCCTTCHHHHHHHHHHH-----------STTSCEEEEEEHHHHHHT--GGGHHHHHHHTCCCEEEEEECSBCHHHHH
T ss_pred             cCCcccchhHHHHHHHHhhh-----------hcccceEeeccccccccc--chhhhhhhhhhhhhhHHHhhccccceEee
Confidence            45679999999999999999           789999999999999876  6789999999999887777775 432110


Q ss_pred             -----------ccccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928          270 -----------HLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR  327 (434)
Q Consensus       270 -----------~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R  327 (434)
                                 .......+|+.++|++||+++++|+  ++.++.++++    ++.+.++|+|||++|.+
T Consensus       125 ~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~----~a~~~~~p~lIeV~vd~  187 (198)
T d2ihta3         125 YQNIGHHRSHDPAVKFGGVDFVALAEANGVDATRAT--NREELLAALR----KGAELGRPFLIEVPVNY  187 (198)
T ss_dssp             HHHHHHSSCCGGGTBCCCCCHHHHHHHTTCEEEECC--SHHHHHHHHH----HHHTSSSCEEEEEEBCC
T ss_pred             eeccccccccccccccCCcchhhhccccCceEEEeC--CHHHHHHHHH----HHHhCCCCEEEEEEcCC
Confidence                       0011245789999999999999997  5567666555    45567899999999854

>d1ozha3 c.36.1.9 (A:367-558) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Catabolic acetolactate synthase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=99.75  E-value=3.4e-19  Score=163.30  Aligned_cols=119  Identities=18%  Similarity=0.213  Sum_probs=93.4

Q ss_pred             ccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcC-CccCcc
Q 013928          190 LLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN-LWAIGM  268 (434)
Q Consensus       190 ~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN-~y~is~  268 (434)
                      ..+.+|.||+++|+|+|+++|           .+++.|||++|||+|+++  ..+|.++.++++|+++||.|| .|++..
T Consensus        49 ~~~~~g~mG~~l~~aiGa~la-----------~p~~~vi~i~GDG~f~~~--~~el~t~~~~~l~~~iiv~nN~~~~~~~  115 (192)
T d1ozha3          49 ISNGQQTMGVALPWAIGAWLV-----------NPERKVVSVSGDGGFLQS--SMELETAVRLKANVLHLIWVDNGYNMVA  115 (192)
T ss_dssp             CCCTTCCTTCHHHHHHHHHHH-----------STTSEEEEEEEHHHHHHH--TTHHHHHHHHTCCEEEEEEECSBCHHHH
T ss_pred             cccccccccccccchhHHHhh-----------cccccceeecccccccch--hhhHHHHhhhcCceeEEEEcCCCccccc
Confidence            356789999999999999999           788999999999999876  678999999999976666655 555432


Q ss_pred             ccc---------ccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928          269 SHL---------RATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR  327 (434)
Q Consensus       269 ~~~---------~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R  327 (434)
                      ..+         .....+|+.+++++||+++++|+..  +++.+++++|    .+.++|+|||+.|.+
T Consensus       116 ~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~~~--~el~~al~~a----~~~~gp~lIeV~vd~  177 (192)
T d1ozha3         116 IQEEKKYQRLSGVEFGPMDFKAYAESFGAKGFAVESA--EALEPTLRAA----MDVDGPAVVAIPVDY  177 (192)
T ss_dssp             HHHHHHHSSCCSCBCCCCCHHHHHHTTTSEEEECCSG--GGHHHHHHHH----HHSSSCEEEEEEBCC
T ss_pred             cccccccCccccCcCCCCCHHHHHHHhccccEEeCCH--HHHHHHHHHH----HHcCCcEEEEEEeCC
Confidence            211         1113578999999999999999854  4766655554    457899999999854

>d1t9ba3 c.36.1.9 (A:461-687) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Acetohydroxyacid synthase catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=3.4e-19  Score=167.58  Aligned_cols=119  Identities=26%  Similarity=0.394  Sum_probs=96.7

Q ss_pred             cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccc
Q 013928          191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH  270 (434)
Q Consensus       191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~  270 (434)
                      .+++++||+++|.|+|+++|           .|++.|||++|||+|++.  ..+|.+|.++++|+++||.||+ +++...
T Consensus        59 ~~~~g~mG~~~~aaiGa~lA-----------~p~r~Vv~i~GDGsf~m~--~~EL~Ta~r~~l~i~iiV~nN~-~~g~~~  124 (227)
T d1t9ba3          59 SGGLGTMGYGLPAAIGAQVA-----------KPESLVIDIDGDASFNMT--LTELSSAVQAGTPVKILILNNE-EQGMVT  124 (227)
T ss_dssp             CCSSCCTTCHHHHHHHHHHH-----------CTTSEEEEEEEHHHHHHH--GGGHHHHHHHTCCCEEEEEECS-SCHHHH
T ss_pred             ecccccchhhHHHHHHHHhc-----------CCCCeEEEeCCCcccccc--hHHHHHHhhcCCceEEEEEecc-cccchh
Confidence            56789999999999999999           789999999999999886  6789999999999888887775 343221


Q ss_pred             c------------ccccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCC
Q 013928          271 L------------RATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR  329 (434)
Q Consensus       271 ~------------~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~  329 (434)
                      .            .....+|+.++|++||+++++|.  +..++..++++|+    ..++|+|||+.+.+..
T Consensus       125 ~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~v~--~~~el~~al~~a~----~~~~p~lieV~vd~~~  189 (227)
T d1t9ba3         125 QWQSLFYEHRYSHTHQLNPDFIKLAEAMGLKGLRVK--KQEELDAKLKEFV----STKGPVLLEVEVDKKV  189 (227)
T ss_dssp             HHHHHHSTTCCCSCCCCCCCHHHHHHHTTCEEEEEC--SHHHHHHHHHHHH----HCSSCEEEEEEBCSSC
T ss_pred             HHHhhhhccccccccCCCCCHHHHHhhcccceEeeC--CHHHHHHHHHHHH----HCCCCEEEEEEECCCC
Confidence            1            11245789999999999999997  5567777666554    5689999999997654

>d1zpda3 c.36.1.9 (A:363-566) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Pyruvate decarboxylase
species: Zymomonas mobilis [TaxId: 542]

Probab=99.72  E-value=2.6e-18  Score=158.85  Aligned_cols=119  Identities=22%  Similarity=0.270  Sum_probs=90.3

Q ss_pred             cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCccc
Q 013928          191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMS  269 (434)
Q Consensus       191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~  269 (434)
                      .+.+|.||+++|+|+|+++|           .|++.|||++|||+|++.  .++|.+|.++++|+++||.||+ |++-..
T Consensus        47 ~~~~g~mG~~l~aAiGa~la-----------~p~~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpi~iiV~NN~~~g~~~~  113 (204)
T d1zpda3          47 EMQWGHIGWSVPAAFGYAVG-----------APERRNILMVGDGSFQLT--AQEVAQMVRLKLPVIIFLINNYGYTIEVM  113 (204)
T ss_dssp             CTTTCCTTTHHHHHHHHHHH-----------CTTSEEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSSCHHHHT
T ss_pred             CCCCcccchhhHHHHHHHHh-----------CCCCceeccccccceeee--ecccchhhhcccccceEEEecccccccce
Confidence            46789999999999999999           789999999999999886  7899999999999877777764 443211


Q ss_pred             ccc----cccCchhhh---------ccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928          270 HLR----ATSDPQIYK---------KGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR  327 (434)
Q Consensus       270 ~~~----~~~~~d~~~---------~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R  327 (434)
                      .+.    ....+|+.+         .++++|+++++|+  ++.++.+++++|+   ...++|+|||+.+.|
T Consensus       114 ~~~~~~~~~~~~d~~~~~~~~~~~~~a~~~g~~~~~v~--~~~el~~al~~al---~~~~gp~lieV~vd~  179 (204)
T d1zpda3         114 IHDGPYNNIKNWDYAGLMEVFNGNGGYDSGAAKGLKAK--TGGELAEAIKVAL---ANTDGPTLIECFIGR  179 (204)
T ss_dssp             TSCCGGGCCCCCCHHHHHHHHHCTTSSSCCCCEEEEES--BHHHHHHHHHHHH---HCCSSCEEEEEECCT
T ss_pred             eccccccccchhhhhhhhhhcCcchhhhccCccEEEec--CHHHHHHHHHHHH---HcCCCcEEEEEEECc
Confidence            111    112334433         4567899999997  5668877776664   256799999998754

>d1ovma3 c.36.1.9 (A:356-551) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Indole-3-pyruvate decarboxylase
species: Enterobacter cloacae [TaxId: 550]

Probab=99.72  E-value=2.3e-18  Score=158.20  Aligned_cols=119  Identities=16%  Similarity=0.141  Sum_probs=91.2

Q ss_pred             ccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcC-CccCcc
Q 013928          190 LLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN-LWAIGM  268 (434)
Q Consensus       190 ~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN-~y~is~  268 (434)
                      ..+++|+||+++|.|+|+++|           .|++.|||++|||+|+++  .++|.++.++++|+++||.|| +|++..
T Consensus        48 ~~~~~g~mG~~l~~aiGa~la-----------~p~~~vv~i~GDG~f~~~--~~eL~ta~~~~l~i~iiV~nN~~~~~~~  114 (196)
T d1ovma3          48 VQPLWGSIGYTLAAAFGAQTA-----------CPNRRVIVLTGDGAAQLT--IQELGSMLRDKQHPIILVLNNEGYTVER  114 (196)
T ss_dssp             CCTTTCCTTHHHHHHHHHHHH-----------CTTSCEEEEEEHHHHHHH--TTHHHHHHHTTCCCEEEEEESSSCHHHH
T ss_pred             eCCCCccccccchhhHHHHHh-----------hhccceecccccccceee--cccccccccccccceEEEEecCccccch
Confidence            346678999999999999999           788999999999999986  789999999999977777766 465421


Q ss_pred             ccc------ccccCchhhhccccCCC----cEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928          269 SHL------RATSDPQIYKKGPAFGM----PGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR  327 (434)
Q Consensus       269 ~~~------~~~~~~d~~~~a~a~Gi----~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R  327 (434)
                      ..+      .....+++.+++++||+    ++++|.  ++.++.+    |++++.+.++|+|||+++.+
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~v~--~~~el~~----al~~a~~~~gp~lIev~~~~  177 (196)
T d1ovma3         115 AIHGAEQRYNDIALWNWTHIPQALSLDPQSECWRVS--EAEQLAD----VLEKVAHHERLSLIEVMLPK  177 (196)
T ss_dssp             HHSCTTCGGGCCCCCCGGGSTTTSCSSCCEEEEEEC--BHHHHHH----HHHHHTTCSSEEEEEEECCT
T ss_pred             hhhccccccccccccccchhHHhcCccccceeEEEe--cHHHHHH----HHHHHHHCCCcEEEEEEeCh
Confidence            111      11234678888888886    567786  4556655    55556678899999998754

>d2ieaa2 c.36.1.10 (A:56-470) Pyruvate dehydrogenase E1 component, PP module {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: TK-like PP module
domain: Pyruvate dehydrogenase E1 component, PP module
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=1.3e-16  Score=162.09  Aligned_cols=216  Identities=19%  Similarity=0.128  Sum_probs=143.5

Q ss_pred             cCeecccccCCCChHHH-HHHHHHhcC------CCCEEEccCcchHHHH------HcCCCHHHHHHHHhcCCCCCccCCC
Q 013928          112 RGKMFGFVHLYNGQEAV-STGFIKLLK------KEDSVVSTYRDHVHAL------SKGVPARAVMSELFGKATGCCRGQG  178 (434)
Q Consensus       112 ~gk~~G~~h~~~GqEa~-~~g~~~~L~------~~D~v~~~yR~~~~~L------a~G~~~~~i~~el~g~~~g~~~G~g  178 (434)
                      ..++.|+..++.|.--+ .+++...|+      .+|+|++.  +|+..+      ..|.-..+-+..+.....+.  |-.
T Consensus        45 ~~~~GGH~g~~ls~~~l~~vl~~~~~~~p~~~~~d~~ilsk--GHas~~lYa~l~~~g~~~~~~l~~~r~~~~~~--~~~  120 (415)
T d2ieaa2          45 DLELGGHMASFQSSATIYDVCFNHFFRARNEQDGGDLVYFQ--GHISPGVYARAFLEGRLTQEQLDNFRQEVHGN--GLS  120 (415)
T ss_dssp             CSCCCCCCHHHHHHHHHHHHHHHHTCCCCCSSSCCCEEECC--GGGHHHHHHHHHHTTSSCHHHHTTBTCCTTSS--CBC
T ss_pred             CCCCCCchhhHHHHHHHHHHHHHhhcCCCCcCCCCCEEEec--CcchHHHHHHHHHcCCCchhhHHHHhhhccCC--CCC
Confidence            34555655445555333 566667776      25677764  454332      25553333333333321110  111


Q ss_pred             CCcccccCCCcccCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCC-eEE
Q 013928          179 GSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVF  257 (434)
Q Consensus       179 gs~h~~~~~~~~~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LP-vI~  257 (434)
                      ...|............+.+|.+...++|++.+.++.....+....+..|+|++|||++++|++||++++|+.++|. +|+
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~gDg~~~eg~~~ea~~~a~~~~l~nl~~  200 (415)
T d2ieaa2         121 SYPHPKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHRGLKDTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVF  200 (415)
T ss_dssp             SSCCTTTSTTTCCCCCCSTTHHHHHHHHHHHHHHHHHHTTSCCCTTCCEEEEEETGGGGSHHHHTTHHHHHHTTCTTEEE
T ss_pred             CCCCCCCCCCCCcCCCchhhhHHHHHHHHHHHHHHHhhhccccCCCceEEEEecccccchHHHHHHHHHHHHhCCCeEEE
Confidence            1122222222334455677777777777777666554333334567899999999999999999999999999995 999


Q ss_pred             EEEcCCccCccccccccc-CchhhhccccCCCcEEEE-------------------------------------------
Q 013928          258 VVENNLWAIGMSHLRATS-DPQIYKKGPAFGMPGFHV-------------------------------------------  293 (434)
Q Consensus       258 VV~NN~y~is~~~~~~~~-~~d~~~~a~a~Gi~~~~V-------------------------------------------  293 (434)
                      |+++|.+.++.+...... ..++.+++++|||.++.|                                           
T Consensus       201 i~d~N~~~~~~~~~~~~~~~~~~~~~~~~~gw~v~~~~~~~~~~~~~~~d~~~al~~~~~~~v~g~~~~~~~~~ga~~~~  280 (415)
T d2ieaa2         201 VINCNLQRLDGPVTGNGKIINELEGIFEGAGWNVIKVMWGSRWDELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYVRE  280 (415)
T ss_dssp             EEEECSBCSSSBSCTTSCHHHHHHHHHHHTTCEEEEECBCGGGHHHHHHCSSCHHHHHHHHCCHHHHHHHTTSCHHHHHH
T ss_pred             EEeCCceeeccChhccccchHHHHHHHHhcCceeEEeecchhhhhhhccchhhhhhhhhhccccccceeccccchhhhhh
Confidence            999999899877643322 367889999999999877                                           


Q ss_pred             --------------------------eCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCCC
Q 013928          294 --------------------------DGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA  334 (434)
Q Consensus       294 --------------------------dG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~~  334 (434)
                                                ||+|+.+++++++++.+   ..++|++|+++|.+++|-..+
T Consensus       281 ~~~~~~~~~~~l~~~l~~~~~~~l~~dGHd~~~l~~a~~~ak~---~~d~P~vI~a~TiKGkGlp~A  344 (415)
T d2ieaa2         281 HFFGKYPETAALVADWTDEQIWALNRGGHDPKKIYAAFKKAQE---TKGKATVILAHTIKGYGMGDA  344 (415)
T ss_dssp             HTGGGSHHHHTTSTTSCHHHHTTCCBGGGCHHHHHHHHHHHHH---CCSSCEEEEEECCTTTTCTTC
T ss_pred             hhccccchhhHHHhhhhhhhhhhhhhccCchhhhHHHHHHHHh---cCCCceEEEEecccccCCCcc
Confidence                                      78899999887776653   346799999999999997654

>d1pvda3 c.36.1.9 (A:361-556) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Pyruvate decarboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.71  E-value=3.5e-18  Score=156.77  Aligned_cols=124  Identities=18%  Similarity=0.159  Sum_probs=93.6

Q ss_pred             cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcC-CccCccc
Q 013928          191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN-LWAIGMS  269 (434)
Q Consensus       191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN-~y~is~~  269 (434)
                      ...+|.||+++|.|+|+|+|.|..       .|+++|||++|||+++++  .++|.++.++++|+++||.|| +|++...
T Consensus        49 ~~~~g~mG~~l~~aiG~alaa~~~-------~p~~~Vv~i~GDGsf~m~--~~eL~ta~~~~l~i~~iV~nN~~y~~~~~  119 (196)
T d1pvda3          49 QVLWGSIGFTTGATLGAAFAAEEI-------DPKKRVILFIGDGSLQLT--VQEISTMIRWGLKPYLFVLNNDGYTIEKL  119 (196)
T ss_dssp             CTTTCCTTHHHHHHHHHHHHHHHH-------CTTCCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEESSSCHHHHT
T ss_pred             cCCcCcccccccchhHHHHHHHhc-------CCCCceeeccCccccccc--cccccccccccccceEEEEeCCccceeEe
Confidence            466799999999999999998876       689999999999999886  679999999999976666655 5543111


Q ss_pred             cc------ccccCchhhhccccCCCcE---EEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928          270 HL------RATSDPQIYKKGPAFGMPG---FHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR  327 (434)
Q Consensus       270 ~~------~~~~~~d~~~~a~a~Gi~~---~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R  327 (434)
                      ..      .....+|+.+++++||+++   .+|+  ++.++..+++++.  ....++|+|||+++.+
T Consensus       120 ~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~v~--~~~el~~al~~~~--~~~~~~~~lIeV~i~~  182 (196)
T d1pvda3         120 IHGPKAQYNEIQGWDHLSLLPTFGAKDYETHRVA--TTGEWDKLTQDKS--FNDNSKIRMIEIMLPV  182 (196)
T ss_dssp             TSCTTCGGGCCCCCCGGGHHHHTTCSSEEEEEEC--BHHHHHHHHTCTT--TTSCSSEEEEEEECCT
T ss_pred             eccCccccccCCCCCHHHHHHHhCCCCceEEEec--CHHHHHHHHHHHH--HhCCCCcEEEEEECCC
Confidence            11      1123578999999999665   4565  6667777665432  2356789999998754

>d2ji7a3 c.36.1.9 (A:370-552) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Oxalyl-CoA decarboxylase
species: Oxalobacter formigenes [TaxId: 847]

Probab=99.69  E-value=1.4e-17  Score=151.17  Aligned_cols=116  Identities=19%  Similarity=0.235  Sum_probs=92.1

Q ss_pred             cCCcccccccchhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccc
Q 013928          191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH  270 (434)
Q Consensus       191 ~~~~g~lG~glp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~  270 (434)
                      .+++|+||+++|.|+|++ |           .+++.|||++|||+|+++  ..+|.+|.++++|+++||.||+ ++....
T Consensus        53 ~~~~g~mG~~l~~aig~~-a-----------~~~~~vv~i~GDGsf~~~--~~el~ta~~~~l~i~iiV~NN~-g~~~~~  117 (183)
T d2ji7a3          53 SGTWGVMGIGMGYCVAAA-A-----------VTGKPVIAVEGDSAFGFS--GMELETICRYNLPVTVIIMNNG-GIYKGN  117 (183)
T ss_dssp             CTTTTCTTCHHHHHHHHH-H-----------HHCSCEEEEEEHHHHHTT--GGGHHHHHHTTCCEEEEEEECS-BSSCSC
T ss_pred             cCCccccccccchhhhhh-c-----------CCcceEEEEEcCcchhhc--hhhhhhhhhccccchhhhhhhh-hhhhhh
Confidence            456799999999999876 4           257889999999999987  5789999999999999999886 443222


Q ss_pred             ccc----------ccCchhhhccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928          271 LRA----------TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR  327 (434)
Q Consensus       271 ~~~----------~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R  327 (434)
                      +.+          ...+|+.+++++||+++++|+  ++.++.+++++|+    +.++|+|||+.|.+
T Consensus       118 q~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~----~~~~p~lIev~idp  178 (183)
T d2ji7a3         118 EADPQPGVISCTRLTRGRYDMMMEAFGGKGYVAN--TPAELKAALEEAV----ASGKPCLINAMIDP  178 (183)
T ss_dssp             CCCSBTTBCCTTBCCCCCHHHHHHHTTCEEEEEC--SHHHHHHHHHHHH----HHTSCEEEEEEBCT
T ss_pred             hccccccccccccccccchhhhhhhcCCcEEEeC--CHHHHHHHHHHHH----hCCCcEEEEEEECC
Confidence            111          134789999999999999998  5567777666655    46899999999865

>d2c42a2 c.36.1.12 (A:786-1232) Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI {Desulfovibrio africanus [TaxId: 873]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: PFOR PP module
domain: Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI
species: Desulfovibrio africanus [TaxId: 873]

Probab=98.71  E-value=8.5e-08  Score=96.18  Aligned_cols=99  Identities=19%  Similarity=0.165  Sum_probs=74.6

Q ss_pred             CCceEEEEeCcccc-ccchHHHHHHHHHHcCCCeEEEEEcCC-ccCcccccc----------------cccCchhhhccc
Q 013928          223 CDHVTLAFFGDGTC-NNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLR----------------ATSDPQIYKKGP  284 (434)
Q Consensus       223 ~d~~vv~~~GDGa~-~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~~~~----------------~~~~~d~~~~a~  284 (434)
                      .+..||++.|||.+ ..|  ..+|.-|...+.+|++||.||. |+.+..+..                .....|+..++.
T Consensus       168 ~k~~V~~~gGDG~~~dIG--~~~L~~A~~rg~nit~ivlDNe~Y~nTGgQ~S~~TP~Ga~t~ttp~Gk~~~kkdi~~ia~  245 (447)
T d2c42a2         168 TKKSVWIFGGDGWAYDIG--YGGLDHVLASGEDVNVFVMDTEVYSNTGGQSSKATPTGAVAKFAAAGKRTGKKDLARMVM  245 (447)
T ss_dssp             SCCEEEEEEEHHHHHTTT--HHHHHHHHHTTCSCEEEEEECSSBTTTTCBCCTTSCTTCCBBTBTTCCSSCCCCHHHHHH
T ss_pred             cCCcEEEEecCccHhhcC--hHHHHHHHHcCCCceEEEEcCccccCCCCcCCCCCcCCeecccccCCCcCCCCCHHHHHH
Confidence            45789999999996 588  8899999999999888888775 554332111                112357888899


Q ss_pred             cCCCcEE-EEe-CCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Q 013928          285 AFGMPGF-HVD-GMDVLKVREVAKEAIERARRGEGPTLVECETYR  327 (434)
Q Consensus       285 a~Gi~~~-~Vd-G~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R  327 (434)
                      ++|.+++ ++. +.++..+.+++++|+    ..+||.+|++.+.-
T Consensus       246 a~g~~YVA~~s~~~~~~~l~kaikeA~----~~~GpS~I~~~sPC  286 (447)
T d2c42a2         246 TYGYVYVATVSMGYSKQQFLKVLKEAE----SFPGPSLVIAYATC  286 (447)
T ss_dssp             TTSSSEEEEECTTTCHHHHHHHHHHHH----HSSSCEEEEEECCC
T ss_pred             HCCCceEEEEeCCCCHHHHHHHHHHHH----hCCCCeEEEeecCC
Confidence            9999876 675 678888888766665    56899999997543

>d2djia2 c.36.1.5 (A:3-186) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Pyruvate oxidase
species: Aerococcus viridans [TaxId: 1377]

Probab=95.29  E-value=0.022  Score=49.51  Aligned_cols=92  Identities=16%  Similarity=0.075  Sum_probs=61.6

Q ss_pred             eEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHHH
Q 013928          226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVA  305 (434)
Q Consensus       226 ~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a~  305 (434)
                      ++++..|=|.++.   ..+|..|..-+.|+|+|.-+...........|  ..|...+++.+.-...+|.  ++.++.+.+
T Consensus        71 v~~~t~GpG~~n~---~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~Q--~~d~~~~~~~itk~~~~v~--~~~~~~~~~  143 (184)
T d2djia2          71 VTVGSGGPGASHL---INGLYDAAMDNIPVVAILGSRPQRELNMDAFQ--ELNQNPMYDHIAVYNRRVA--YAEQLPKLV  143 (184)
T ss_dssp             EEEECTTHHHHTT---HHHHHHHHHHTCCEEEEEEESCGGGTTTTCTT--CCCCHHHHHTTCSEEEECC--SGGGHHHHH
T ss_pred             eeeccccccccch---hHhHHHHHHhCccceeecccchhhHhhcCccc--ccccccchhhhcceeeccc--cchhhHHHH
Confidence            4445557777654   66888999999999999865431111011111  2244555666655566666  556888889


Q ss_pred             HHHHHHHHccCCCEEEEEE
Q 013928          306 KEAIERARRGEGPTLVECE  324 (434)
Q Consensus       306 ~~Al~~ar~~~gP~lIev~  324 (434)
                      ++|++.+..++||+.|++-
T Consensus       144 ~~A~~~a~~~rGPv~i~iP  162 (184)
T d2djia2         144 DEAARMAIAKRGVAVLEVP  162 (184)
T ss_dssp             HHHHHHHHHTTSEEEEEEE
T ss_pred             HHHHHHHhCCCCCEEEEeC
Confidence            9999999888899999994

>d2ihta2 c.36.1.5 (A:12-197) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Carboxyethylarginine synthase
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=95.28  E-value=0.032  Score=48.42  Aligned_cols=95  Identities=12%  Similarity=0.130  Sum_probs=64.6

Q ss_pred             CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCC-ccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHH
Q 013928          224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVR  302 (434)
Q Consensus       224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~-y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~  302 (434)
                      -.++++..|=|.++.   .-+|..|..-+.|+|+|.-+.. ......  ......|...+++.+--...+|.  ++.++.
T Consensus        63 ~gv~~~t~GpG~~n~---~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~--~~~q~~d~~~~~~~~tk~~~~v~--~~~~i~  135 (186)
T d2ihta2          63 PQACWATLGPGMTNL---STGIATSVLDRSPVIALAAQSESHDIFPN--DTHQCLDSVAIVAPMSKYAVELQ--RPHEIT  135 (186)
T ss_dssp             CEEEEECTTHHHHHH---HHHHHHHHHHTCCEEEEEEESCGGGCCTT--TSTTCCCHHHHHGGGSSEEEECC--SGGGHH
T ss_pred             cceeeccccccccch---hhhhhHHHHhhccceeeeccCcchhcccc--ccccccccccccCCceeeccccC--Cchhhh
Confidence            345555567777763   5578889999999999986432 222111  11123466677777766677775  556888


Q ss_pred             HHHHHHHHHHHcc-CCCEEEEEEE
Q 013928          303 EVAKEAIERARRG-EGPTLVECET  325 (434)
Q Consensus       303 ~a~~~Al~~ar~~-~gP~lIev~t  325 (434)
                      +.+++|++.+..+ .||+.|++-.
T Consensus       136 ~~l~~A~~~a~s~~~GPv~l~iP~  159 (186)
T d2ihta2         136 DLVDSAVNAAMTEPVGPSFISLPV  159 (186)
T ss_dssp             HHHHHHHHHHTBSSCCCEEEEEEH
T ss_pred             hHHHHHHHHHhcCCCeeEEEEeCH
Confidence            8899999988876 4799999953

>d1ozha2 c.36.1.5 (A:7-187) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Catabolic acetolactate synthase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=95.14  E-value=0.041  Score=47.60  Aligned_cols=93  Identities=18%  Similarity=0.107  Sum_probs=63.2

Q ss_pred             ceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHH
Q 013928          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV  304 (434)
Q Consensus       225 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a  304 (434)
                      .++++..|=|.++.   ..+|..|..-+.|+|+|.-+.....-.....  ...|....++.+--...+|.  ++.++.+.
T Consensus        69 gv~~~t~GpG~~n~---~~gi~~A~~~~~Pvl~isg~~~~~~~~~~~~--q~~d~~~~~~~~tk~~~~v~--~~~~~~~~  141 (181)
T d1ozha2          69 GVALVTSGPGCSNL---ITGMATANSEGDPVVALGGAVKRADKAKQVH--QSMDTVAMFSPVTKYAIEVT--APDALAEV  141 (181)
T ss_dssp             EEEEECSTHHHHTT---HHHHHHHHHHTCCEEEEEEECCTTTC--------CCCHHHHHGGGCSEEEECC--SGGGHHHH
T ss_pred             cceeeccchhhhhh---hhhHHHHhhcCCceeeeecccchhhcccccc--ccccccccccccchheeccC--chhHHHHH
Confidence            34555556666664   5689999999999999987654211111111  23456667777776777776  55688888


Q ss_pred             HHHHHHHHHccC-CCEEEEEE
Q 013928          305 AKEAIERARRGE-GPTLVECE  324 (434)
Q Consensus       305 ~~~Al~~ar~~~-gP~lIev~  324 (434)
                      +++|++.+..++ ||+.|++-
T Consensus       142 l~~A~~~A~~~~~GPV~l~iP  162 (181)
T d1ozha2         142 VSNAFRAAEQGRPGSAFVSLP  162 (181)
T ss_dssp             HHHHHHHHHSSSCCEEEEEEE
T ss_pred             HHHHHHHHhhCCCccEEEEcC
Confidence            999999998875 79999994

>d1zpda2 c.36.1.5 (A:2-187) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Pyruvate decarboxylase
species: Zymomonas mobilis [TaxId: 542]

Probab=95.09  E-value=0.052  Score=47.06  Aligned_cols=93  Identities=13%  Similarity=0.130  Sum_probs=60.1

Q ss_pred             EEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCcc---CcccccccccC---chhhhccccCCCcEEEEeCCCHHH
Q 013928          227 TLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA---IGMSHLRATSD---PQIYKKGPAFGMPGFHVDGMDVLK  300 (434)
Q Consensus       227 vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~---is~~~~~~~~~---~d~~~~a~a~Gi~~~~VdG~D~~a  300 (434)
                      +++..|=|.++.   ..+|..|..-+.|+|+|+-+....   -+.....+...   .+..+.++.+-....+|+  ++.+
T Consensus        68 v~~t~GpG~~N~---~~gl~~A~~~~~Pvl~isg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vtk~~~~v~--~~~~  142 (186)
T d1zpda2          68 AVVTYSVGALSA---FDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLEMAKNITAAAEAIY--TPEE  142 (186)
T ss_dssp             EEECTTTTHHHH---HHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCCHHHHHHGGGCSCEEEEC--SGGG
T ss_pred             eEeeccccchhh---hhhhhhhhhcccceEEEecccCcccccCCCcceeecCCcchhhhhhccCCceeeeeEcC--CHHH
Confidence            333456555543   668889999999999998653211   11111111111   133456666666777886  4557


Q ss_pred             HHHHHHHHHHHHHccCCCEEEEEE
Q 013928          301 VREVAKEAIERARRGEGPTLVECE  324 (434)
Q Consensus       301 v~~a~~~Al~~ar~~~gP~lIev~  324 (434)
                      +.+.+++|++.+..+++|+.|++-
T Consensus       143 ~~~~i~~A~~~A~~~~~PV~l~iP  166 (186)
T d1zpda2         143 APAKIDHVIKTALREKKPVYLEIA  166 (186)
T ss_dssp             HHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred             HHHHHHHHHHHHhhCCCCEEEECC
Confidence            888888899888888899999984

>d2ez9a2 c.36.1.5 (A:9-182) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Pyruvate oxidase
species: Lactobacillus plantarum [TaxId: 1590]

Probab=95.04  E-value=0.054  Score=46.49  Aligned_cols=93  Identities=16%  Similarity=0.080  Sum_probs=59.2

Q ss_pred             CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCc-cCcccccccccCchhhhccccCCCcEEEEeCCCHHHHH
Q 013928          224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLW-AIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVR  302 (434)
Q Consensus       224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y-~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~  302 (434)
                      -.++++..|=|.++.   ..+|..|..-+.|+|+|.-+..- ..+.. ..|  ..|...+++.+--...+|.  ++.++.
T Consensus        68 ~gv~~~t~GpG~~N~---~~gl~~A~~~~~P~l~i~g~~~~~~~~~~-~~Q--~~d~~~~~~~itk~~~~v~--~~~~~~  139 (174)
T d2ez9a2          68 IGVCFGSAGPGGTHL---MNGLYDAREDHVPVLALIGQFGTTGMNMD-TFQ--EMNENPIYADVADYNVTAV--NAATLP  139 (174)
T ss_dssp             CEEEEECTTHHHHTT---HHHHHHHHHTTCCEEEEEEECCTTTTTSC-CTT--CCCCHHHHTTTCSEEEECC--CSTTHH
T ss_pred             eeEEeecccccccch---hhhHHHHHhcCccceeeeccccccccCcc-ccc--cchhhhhhccccccccccc--cHHHHH
Confidence            345555567777764   56899999999999999865431 11111 111  2234444555444455665  344677


Q ss_pred             HHHHHHHHHHHccCCCEEEEEE
Q 013928          303 EVAKEAIERARRGEGPTLVECE  324 (434)
Q Consensus       303 ~a~~~Al~~ar~~~gP~lIev~  324 (434)
                      +.+++|++.+....||+.|++-
T Consensus       140 ~~i~~A~~~A~~~pGPv~l~iP  161 (174)
T d2ez9a2         140 HVIDEAIRRAYAHQGVAVVQIP  161 (174)
T ss_dssp             HHHHHHHHHHHHHTSEEEEEEE
T ss_pred             HHHHHHHHHHhCCCCCEEEEeC
Confidence            7788888887777899999984

>d2ji7a2 c.36.1.5 (A:7-194) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Oxalyl-CoA decarboxylase
species: Oxalobacter formigenes [TaxId: 847]

Probab=94.72  E-value=0.031  Score=48.60  Aligned_cols=95  Identities=14%  Similarity=0.182  Sum_probs=61.5

Q ss_pred             CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCcc-CcccccccccCchhhhccccCCCcEEEEeCCCHHHHH
Q 013928          224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA-IGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVR  302 (434)
Q Consensus       224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~-is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~  302 (434)
                      -.++++..|=|.++.   ..+|..|..-+.|+|+|.-+-.-. .+.. .......|....++.+--...+|.  +++++.
T Consensus        67 ~~v~~~t~GpG~~n~---~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~-~~~~q~~d~~~~~~~~tk~~~~v~--~~~~i~  140 (188)
T d2ji7a2          67 PGVCLTVSAPGFLNG---VTSLAHATTNCFPMILLSGSSEREIVDLQ-QGDYEEMDQMNVARPHCKASFRIN--SIKDIP  140 (188)
T ss_dssp             CEEEEECSHHHHHHH---HHHHHHHHHHTCCEEEEEEECCHHHHHTT-CCCTTCCCHHHHTGGGSSEEEECC--SGGGHH
T ss_pred             cceeecccccccccc---chhHHHHHHhcccceEEeccCchhhhccc-ccccceeeeecccCCcchhhhccc--cccccH
Confidence            334455556665543   568889999999999998532211 0100 011122355666777666677776  556888


Q ss_pred             HHHHHHHHHHHccC-CCEEEEEE
Q 013928          303 EVAKEAIERARRGE-GPTLVECE  324 (434)
Q Consensus       303 ~a~~~Al~~ar~~~-gP~lIev~  324 (434)
                      +.+++|++.+..++ ||+.|++-
T Consensus       141 ~~~~~A~~~a~~~~~GPV~l~iP  163 (188)
T d2ji7a2         141 IGIARAVRTAVSGRPGGVYVDLP  163 (188)
T ss_dssp             HHHHHHHHHHHSSSCCEEEEEEE
T ss_pred             HHHHHHHHHHhCCCCceEEEEcC
Confidence            88899999888865 79999983

>d1t9ba2 c.36.1.5 (A:89-263) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Acetohydroxyacid synthase catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.40  E-value=0.1  Score=44.55  Aligned_cols=93  Identities=22%  Similarity=0.151  Sum_probs=62.0

Q ss_pred             ceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEeCCCHHHHHHH
Q 013928          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV  304 (434)
Q Consensus       225 ~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~~a  304 (434)
                      .++++..|=|.++.   ..+|..|..-++|+|+|+-+.....-..  ......|....++.+--...+|+  ++.++.+.
T Consensus        69 ~v~~~t~GpG~~n~---~~gl~~A~~~~~Pvl~i~g~~~~~~~~~--~~~q~~d~~~l~~~~tk~~~~v~--~~~~~~~~  141 (175)
T d1t9ba2          69 GVVLVTSGPGATNV---VTPMADAFADGIPMVVFTGQVPTSAIGT--DAFQEADVVGISRSCTKWNVMVK--SVEELPLR  141 (175)
T ss_dssp             EEEEECSTHHHHTT---HHHHHHHHHHTCCEEEEEEECCTTTTTS--CCTTCCCHHHHTGGGSSEEEECC--SGGGHHHH
T ss_pred             eEEEEecCcHHHHH---HHHHHHHHHcCCCEEEEecCCChhhcCC--CccccccHhHhcccceeeeEecC--CHHHHHHH
Confidence            44555556676654   6689999999999999997543111000  11112355666666655566665  45578888


Q ss_pred             HHHHHHHHHcc-CCCEEEEEE
Q 013928          305 AKEAIERARRG-EGPTLVECE  324 (434)
Q Consensus       305 ~~~Al~~ar~~-~gP~lIev~  324 (434)
                      +++|++.++.+ .||+.|++-
T Consensus       142 l~~A~~~a~~~~~GPv~l~iP  162 (175)
T d1t9ba2         142 INEAFEIATSGRPGPVLVDLP  162 (175)
T ss_dssp             HHHHHHHHHSSSCCEEEEEEE
T ss_pred             HHHHHHHHhcCCCccEEEEcC
Confidence            89999999876 579999984

>d1pvda2 c.36.1.5 (A:2-181) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Pyruvate decarboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.29  E-value=0.07  Score=45.80  Aligned_cols=94  Identities=9%  Similarity=0.068  Sum_probs=55.3

Q ss_pred             eEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccC-cc--cccccccC---chhhhccccCCCcEEEEeCCCHH
Q 013928          226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAI-GM--SHLRATSD---PQIYKKGPAFGMPGFHVDGMDVL  299 (434)
Q Consensus       226 ~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~i-s~--~~~~~~~~---~d~~~~a~a~Gi~~~~VdG~D~~  299 (434)
                      .+++..|=|.++.   ..+|..|..-++|+|+|+-++.... +.  ..+.....   .++.+.++.+--...++.  ++.
T Consensus        68 ~v~~t~GpG~~N~---~~gl~~A~~~~~P~l~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~--~~~  142 (180)
T d1pvda2          68 CIITTFGVGELSA---LNGIAGSYAEHVGVLHVVGVPSISSQAKQLLLHHTLGNGDFTVFHRMSANISETTAMIT--DIA  142 (180)
T ss_dssp             EEEEETTHHHHHH---HHHHHHHHHHTCCEEEEEEECCCC--------CCSCSSSCSSHHHHHHGGGCSEEEECC--CTT
T ss_pred             eeeeccccccchh---hHHHHHHHhhcccEEEEeccCCcccccccceeeecccccchhHHHHHhhhheeEEEEcC--CHH
Confidence            4556667776653   6688889999999999985432111 11  11111111   223344454433445554  344


Q ss_pred             HHHHHHHHHHHHHHccCCCEEEEEE
Q 013928          300 KVREVAKEAIERARRGEGPTLVECE  324 (434)
Q Consensus       300 av~~a~~~Al~~ar~~~gP~lIev~  324 (434)
                      ++.+.+++|++.+....||+.|++-
T Consensus       143 ~~~~~i~~A~~~a~~~~gPv~i~iP  167 (180)
T d1pvda2         143 TAPAEIDRCIRTTYVTQRPVYLGLP  167 (180)
T ss_dssp             THHHHHHHHHHHHHHHTSCEEEEEE
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEECC
Confidence            6666777777777777899999984

>d1q6za2 c.36.1.5 (A:2-181) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Benzoylformate decarboxylase
species: Pseudomonas putida [TaxId: 303]

Probab=94.23  E-value=0.077  Score=45.71  Aligned_cols=95  Identities=16%  Similarity=0.133  Sum_probs=62.7

Q ss_pred             CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCc-cCcccccccccCchhhhccccCCCcEEEEeCCCHHHHH
Q 013928          224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLW-AIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVR  302 (434)
Q Consensus       224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y-~is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~  302 (434)
                      -.++++..|=|.++.   ..+|..|..-+.|+|+|.-+-.. ..+.....|  ..|...+++.+--...+|.  +++++.
T Consensus        63 ~~v~~~~~GpG~~n~---~~gl~~A~~~~~Pvlvi~g~~~~~~~g~~~~~q--~~D~~~~~~~~tK~~~~v~--~~~~i~  135 (180)
T d1q6za2          63 PAFINLHSAAGTGNA---MGALSNAWNSHSPLIVTAGQQTRAMIGVEALLT--NVDAANLPRPLVKWSYEPA--SAAEVP  135 (180)
T ss_dssp             CEEEEEEHHHHHHHT---HHHHHHHHHTTCCEEEEEEECCHHHHTTTCTTC--CTTGGGSSTTSCSCEECCS--SGGGHH
T ss_pred             cceEEeccccccccc---cceeHhhhhcccceeeeccccccccccccccch--hhheeecccccccccccCC--CHHHHH
Confidence            445666667777764   56899999999999999865321 111111111  2355555665544455664  567888


Q ss_pred             HHHHHHHHHHHcc-CCCEEEEEEE
Q 013928          303 EVAKEAIERARRG-EGPTLVECET  325 (434)
Q Consensus       303 ~a~~~Al~~ar~~-~gP~lIev~t  325 (434)
                      +.+++|++.+..+ .||+.|++-.
T Consensus       136 ~~l~~A~~~a~~~~~GPv~l~iP~  159 (180)
T d1q6za2         136 HAMSRAIHMASMAPQGPVYLSVPY  159 (180)
T ss_dssp             HHHHHHHHHHHSSSCCCEEEEEEG
T ss_pred             HHHHHHHHHHhcCCCccEEEEcCh
Confidence            8999999988876 5799999953

>d2c42a1 c.36.1.8 (A:2-258) Pyruvate-ferredoxin oxidoreductase, PFOR, domain I {Desulfovibrio africanus [TaxId: 873]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: PFOR Pyr module
domain: Pyruvate-ferredoxin oxidoreductase, PFOR, domain I
species: Desulfovibrio africanus [TaxId: 873]

Probab=94.11  E-value=0.12  Score=47.05  Aligned_cols=113  Identities=18%  Similarity=0.113  Sum_probs=72.4

Q ss_pred             chhhHHHHHHHHHHHhhhhhcCCCceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhh
Q 013928          201 IPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIY  280 (434)
Q Consensus       201 lp~AvGaA~A~k~~~~~~~~~~~d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~  280 (434)
                      +.+++|++++             +.++++...-.++.-  ..|.|..+.-..+|+|++|.+-.+.- ++...+....|+.
T Consensus        67 ~~~~~Ga~~a-------------G~r~~t~ts~~Gl~~--m~e~l~~a~~~~~P~V~~v~~r~~~~-~~~~~~~~q~d~~  130 (257)
T d2c42a1          67 AGAVHGALAA-------------GALTTTFTASQGLLL--MIPNMYKISGELLPGVFHVTARAIAA-HALSIFGDHQDIY  130 (257)
T ss_dssp             HHHHHHHHHT-------------TCCEEEEECHHHHHH--HHHHHHHHHHTTCCCEEEEEECCCCS-SSBCCSCCSHHHH
T ss_pred             HHHHHHHHhc-------------CCCeEEEecchHHHH--HHHHHHHHHhcCCceEEEEEecCCCC-CCCccccchHHHH
Confidence            5567777766             334555554434432  37899999999999777766544222 1111111112332


Q ss_pred             hccccCCCcEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCCC
Q 013928          281 KKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSL  333 (434)
Q Consensus       281 ~~a~a~Gi~~~~VdG~D~~av~~a~~~Al~~ar~~~gP~lIev~t~R~~gHs~  333 (434)
                       .++..||+.+.  -.++.++++-...|.+.+...+-|+++-...+|. +|..
T Consensus       131 -~~~~~g~~~l~--~~s~QEa~d~~~~A~~lae~~~~Pv~~~~Dg~~~-sh~~  179 (257)
T d2c42a1         131 -AARQTGFAMLA--SSSVQEAHDMALVAHLAAIESNVPFMHFFDGFRT-SHEI  179 (257)
T ss_dssp             -TTTTSSCEEEE--CCSHHHHHHHHHHHHHHHHHHCCCEEEEEETTTT-TTCE
T ss_pred             -HHHhcceEEEe--cCCHHHHHHHHHHHHHHHHHhCCCEEEEeccchh-cCCc
Confidence             35566776655  4578899998888998888888899998877765 5553

>d1ybha2 c.36.1.5 (A:86-280) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Acetohydroxyacid synthase catalytic subunit
species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]

Probab=94.08  E-value=0.11  Score=45.30  Aligned_cols=93  Identities=26%  Similarity=0.302  Sum_probs=61.8

Q ss_pred             CceEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCcc-CcccccccccCchhhhccccCCCcEEEEeCCCHHHHH
Q 013928          224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA-IGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVR  302 (434)
Q Consensus       224 d~~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~-is~~~~~~~~~~d~~~~a~a~Gi~~~~VdG~D~~av~  302 (434)
                      -.++++..|=|.++.   ..+|..|..-+.|+|+|.-+.... .+..   .....|.....+.+--...+|.  ++.++.
T Consensus        76 ~gv~~~t~GpG~~N~---~~gl~~A~~~~~Pvlvi~g~~~~~~~~~~---~~q~~d~~~~~~~~tk~~~~v~--~~~~~~  147 (195)
T d1ybha2          76 PGICIATSGPGATNL---VSGLADALLDSVPLVAITGQVPRRMIGTD---AFQETPIVEVTRSITKHNYLVM--DVEDIP  147 (195)
T ss_dssp             CEEEEECTTHHHHTT---HHHHHHHHHHTCCEEEEEEECCGGGTTTT---CTTCCCHHHHHGGGSSEEEECC--CGGGHH
T ss_pred             CeEEEEecChHHHHH---HHHHHHHHHcCCCEEEEecCCcHHHhccC---cccccchhhhhcccccchhhcc--hHhhcc
Confidence            345566667777764   568999999999999998754311 1111   1112344455555544455555  556888


Q ss_pred             HHHHHHHHHHHcc-CCCEEEEEE
Q 013928          303 EVAKEAIERARRG-EGPTLVECE  324 (434)
Q Consensus       303 ~a~~~Al~~ar~~-~gP~lIev~  324 (434)
                      +.+++|+..+..+ .||+.|++-
T Consensus       148 ~~~~~A~~~a~~~r~GPV~l~iP  170 (195)
T d1ybha2         148 RIIEEAFFLATSGRPGPVLVDVP  170 (195)
T ss_dssp             HHHHHHHHHHHSSSCCEEEEEEE
T ss_pred             hHHHHHHHHHhcCCCCcEEEECC
Confidence            8999999999886 579999994

>d1ovma2 c.36.1.5 (A:3-180) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Indole-3-pyruvate decarboxylase
species: Enterobacter cloacae [TaxId: 550]

Probab=86.68  E-value=1.2  Score=37.44  Aligned_cols=92  Identities=13%  Similarity=0.122  Sum_probs=52.2

Q ss_pred             eEEEEeCccccccchHHHHHHHHHHcCCCeEEEEEcCCccC---cccccc--c-ccCchhhhccccCCCcEEEEeCCCHH
Q 013928          226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAI---GMSHLR--A-TSDPQIYKKGPAFGMPGFHVDGMDVL  299 (434)
Q Consensus       226 ~vv~~~GDGa~~~G~~~EaLn~A~~~~LPvI~VV~NN~y~i---s~~~~~--~-~~~~d~~~~a~a~Gi~~~~VdG~D~~  299 (434)
                      .|++..|=|.++.   .-+|..|..-+.|+|+|.-......   +.....  + ....++..+++.+-....+++..+  
T Consensus        68 ~v~~t~GpG~~n~---~~gl~~A~~~~~Pvl~isg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~--  142 (178)
T d1ovma2          68 ALLTTFGVGELSA---MNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDGEFRHFYHMSEPITVAQAVLTEQN--  142 (178)
T ss_dssp             EEEEETTHHHHHT---HHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCSHHHHHTGGGCSEEEECCTTT--
T ss_pred             eEEeecccccccc---chhhhHHHhcCccEEEEecCCCchhhccccccccccccchhhhccccccccceeEEEeCcHH--
Confidence            4556667776654   6689999999999999985322110   000000  0 111345556666555556666443  


Q ss_pred             HHHHHHHHHHHHHHccCCCEEEEE
Q 013928          300 KVREVAKEAIERARRGEGPTLVEC  323 (434)
Q Consensus       300 av~~a~~~Al~~ar~~~gP~lIev  323 (434)
                      ++.+..+.+. .+...++|+.|++
T Consensus       143 ~~~~~~~~~~-~a~~~~~Pv~i~i  165 (178)
T d1ovma2         143 ACYEIDRVLT-TMLRERRPGYLML  165 (178)
T ss_dssp             HHHHHHHHHH-HHHHHTCCEEEEE
T ss_pred             HHHHHHHHHH-HHHhCCCCEEEEE
Confidence            5555444333 3444568999987

>d1gpua2 c.36.1.6 (A:338-534) Transketolase (TK), Pyr module {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: TK-like Pyr module
domain: Transketolase (TK), Pyr module
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.17  E-value=3.2  Score=35.71  Aligned_cols=77  Identities=16%  Similarity=0.220  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHcCCCeEEEEEcCCccCcccccccccCchhhhccccCCCcEEEEe-CCCHHHHHHHHHHHHHHHHccCCCE
Q 013928          241 FFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVD-GMDVLKVREVAKEAIERARRGEGPT  319 (434)
Q Consensus       241 ~~EaLn~A~~~~LPvI~VV~NN~y~is~~~~~~~~~~d~~~~a~a~Gi~~~~Vd-G~D~~av~~a~~~Al~~ar~~~gP~  319 (434)
                      ....+..++..++||++|..-.++.++..-....+..|++-   --.+|.++|- -.|..++..+++.|++   ..++|+
T Consensus       112 ~~~~~~~~~~~~~~v~~v~t~~g~~~g~dG~THq~ieDia~---~r~iPn~~v~~PaD~~e~~~a~~~a~~---~~~gP~  185 (197)
T d1gpua2         112 AAGAVRLSALSGHPVIWVATHDSIGVGEDGPTHQPIETLAH---FRSLPNIQVWRPADGNEVSAAYKNSLE---SKHTPS  185 (197)
T ss_dssp             GHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHH---HHTSSSCEEECCCSHHHHHHHHHHHHH---CSSCCE
T ss_pred             hHHHHHHhhhcCCceEEEEecccccccccccchhhHHHHHH---HhcCCCcEEEecCCHHHHHHHHHHHHH---cCCCCE
Confidence            46778888999999999988877665533211222334432   2245555543 3466677766665543   456899


Q ss_pred             EEEE
Q 013928          320 LVEC  323 (434)
Q Consensus       320 lIev  323 (434)
                      .|-+
T Consensus       186 yiRl  189 (197)
T d1gpua2         186 IIAL  189 (197)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            8864