Citrus Sinensis ID: 013930

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430---
MSNDDSSSLAVPFLVDEKQQGLGSKLQEIESNHLHYDDSRTTKTSVFKTCFNGVNALSGVGILSTPYALASGGWLSLILLFFIAAVTFYSGLLIKRCMDVDSNIRSYPDIGDRAFGQKGRLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTVWLDNLSLLSYVSASGVLASVITLGSIVWTGAFDGVGFHQKGTLVNWKGIPSSISLYAFCYCAHPVFPTLYTSMKKKHQFSYVLLVCFFLCTFIYASMAIFGYMMFGSEVQSQITLNLPTSKLSSRLAIYTTLVNPIAKYALMVTPIVNSIKMRASTQYSKRPYSLLISTPLVISTVIVALVVPFFGYLMTLVGAFLSVTASVILPCLCYLKISGAYRRYGIEMIAILGIVSIGFIVAAIGTYVSLVQIIQHYL
ccccccccccccccccccccccccccHHcccccccccccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccccccccEEccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHEEEccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
cccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHEHEHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcccccEEEHHHHHHHHHHHHHHHHEEcHHHHHHHcccccccccccccccccEEEEEEEEEEEEHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHccHHHHHHHHHHHHHcccccHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
msnddssslavpflvdekqqglgskLQEIESnhlhyddsrttkTSVFKTCfngvnalsgvgilstpyalasgGWLSLILLFFIAAVTFYSGLLIKRCmdvdsnirsypdigdrafgqkGRLIVSVFMNIELYLVATGFLilegdnlenlfpntaielggftlggkQCFVVIIALIILPTVWLDNLSLLSYVSASGVLASVITLGSIVwtgafdgvgfhqkgtlvnwkgipssiSLYAFcycahpvfptlytsmkkkhqFSYVLLVCFFLCTFIYASMAIFGYMMFgsevqsqitlnlptsklssRLAIYTTLVNPIAKYALMVTPIVNSIKMrastqyskrpysllisTPLVISTVIVALVVPFFGYLMTLVGAFLSVTASVILPCLCYLKISGAYRRYGIEMIAILGIVSIGFIVAAIGTYVSLVQIIQHYL
msnddssslavpflvdekqQGLGSKLQEIESNHLHYDDSRTTKTSVFKTCFNGVNALSGVGILSTPYALASGGWLSLILLFFIAAVTFYSGLLIKRCMDVDSNIRSYPDIGDRAFGQKGRLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTVWLDNLSLLSYVSASGVLASVITLGSIVWTGAFDGVGFHQKGTLVNWKGIPSSISLYAFCYCAHPVFPTLYTSMKKKHQFSYVLLVCFFLCTFIYASMAIFGYMMFGSEVQSQITLNLPTSKLSSRLAIYTTLVNPIAKYALMVTPIVNSIKMRASTQYSKRPYSLLISTPLVISTVIVALVVPFFGYLMTLVGAFLSVTASVILPCLCYLKISGAYRRYGIEMIAILGIVSIGFIVAAIGTYVSLVQIIQHYL
MSNDDSSSLAVPFLVDEKQQGLGSKLQEIESNHLHYDDSRTTKTSVFKTCFNGVNALSGVGILSTPYALASGGWLSLILLFFIAAVTFYSGLLIKRCMDVDSNIRSYPDIGDRAFGQKGRLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTVWLDNLSLLSYVSASGVLASVITLGSIVWTGAFDGVGFHQKGTLVNWKGIPSSISLYAFCYCAHPVFPTLYTSMKKKHQFSYVLLVCFFLCTFIYASMAIFGYMMFGSEVQSQITLNLPTSKLSSRLAIYTTLVNPIAKYALMVTPIVNSIKMRASTQYSKRPYSLLISTPLVISTVIVALVVPFFGYLMTLVGAFLSVTASVILPCLCYLKISGAYRRYGIEMIAILGIVSIGFIVAAIGTYVSLVQIIQHYL
****************************************TTKTSVFKTCFNGVNALSGVGILSTPYALASGGWLSLILLFFIAAVTFYSGLLIKRCMDVDSNIRSYPDIGDRAFGQKGRLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTVWLDNLSLLSYVSASGVLASVITLGSIVWTGAFDGVGFHQKGTLVNWKGIPSSISLYAFCYCAHPVFPTLYTSMKKKHQFSYVLLVCFFLCTFIYASMAIFGYMMFGSEVQSQITLNLPTSKLSSRLAIYTTLVNPIAKYALMVTPIVNSIKMRASTQYSKRPYSLLISTPLVISTVIVALVVPFFGYLMTLVGAFLSVTASVILPCLCYLKISGAYRRYGIEMIAILGIVSIGFIVAAIGTYVSLVQIIQHY*
***********************************************KTCFNGVNALSGVGILSTPYALASGGWLSLILLFFIAAVTFYSGLLIKRCMDVDSNIRSYPDIGDRAFGQKGRLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTVWLDNLSLLSYVSASGVLASVITLGSIVWTGAFDGVGFHQKGTLVNWKGIPSSISLYAFCYCAHPVFPTLYTSMKKKHQFSYVLLVCFFLCTFIYASMAIFGYMMFGSEVQSQITLNLPTSKLSSRLAIYTTLVNPIAKYALMVTPIVNSIKMRASTQYSKRPYSLLISTPLVISTVIVALVVPFFGYLMTLVGAFLSVTASVILPCLCYLKISGAYRRYGIEMIAILGIVSIGFIVAAIGTYVSLVQIIQHYL
********LAVPFLVDEKQQGLGSKLQEIESNHLHYDDSRTTKTSVFKTCFNGVNALSGVGILSTPYALASGGWLSLILLFFIAAVTFYSGLLIKRCMDVDSNIRSYPDIGDRAFGQKGRLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTVWLDNLSLLSYVSASGVLASVITLGSIVWTGAFDGVGFHQKGTLVNWKGIPSSISLYAFCYCAHPVFPTLYTSMKKKHQFSYVLLVCFFLCTFIYASMAIFGYMMFGSEVQSQITLNLPTSKLSSRLAIYTTLVNPIAKYALMVTPIVNSIKMRASTQYSKRPYSLLISTPLVISTVIVALVVPFFGYLMTLVGAFLSVTASVILPCLCYLKISGAYRRYGIEMIAILGIVSIGFIVAAIGTYVSLVQIIQHYL
*****************************************TKTSVFKTCFNGVNALSGVGILSTPYALASGGWLSLILLFFIAAVTFYSGLLIKRCMDVDSNIRSYPDIGDRAFGQKGRLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTVWLDNLSLLSYVSASGVLASVITLGSIVWTGAFDGVGFHQKGTLVNWKGIPSSISLYAFCYCAHPVFPTLYTSMKKKHQFSYVLLVCFFLCTFIYASMAIFGYMMFGSEVQSQITLNLPTSKLSSRLAIYTTLVNPIAKYALMVTPIVNSIKMRASTQYSKRPYSLLISTPLVISTVIVALVVPFFGYLMTLVGAFLSVTASVILPCLCYLKISGAYRRYGIEMIAILGIVSIGFIVAAIGTYVSLVQIIQHYL
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MSNDDSSSLAVPFLVDEKQQGLGSKLQEIESNHLHYDDSRTTKTSVFKTCFNGVNALSGVGILSTPYALASGGWLSLILLFFIAAVTFYSGLLIKRCMDVDSNIRSYPDIGDRAFGQKGRLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTVWLDNLSLLSYVSASGVLASVITLGSIVWTGAFDGVGFHQKGTLVNWKGIPSSISLYAFCYCAHPVFPTLYTSMKKKHQFSYVLLVCFFLCTFIYASMAIFGYMMFGSEVQSQITLNLPTSKLSSRLAIYTTLVNPIAKYALMVTPIVNSIKMRASTQYSKRPYSLLISTPLVISTVIVALVVPFFGYLMTLVGAFLSVTASVILPCLCYLKISGAYRRYGIEMIAILGIVSIGFIVAAIGTYVSLVQIIQHYL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query433 2.2.26 [Sep-21-2011]
P47082602 Vacuolar amino acid trans yes no 0.771 0.554 0.296 2e-32
Q6PF45518 Vesicular inhibitory amin N/A no 0.886 0.741 0.241 2e-19
Q6DIV6518 Vesicular inhibitory amin yes no 0.863 0.722 0.247 2e-18
P34579486 Vesicular GABA transporte no no 0.916 0.816 0.239 2e-17
O35633525 Vesicular inhibitory amin yes no 0.808 0.666 0.240 2e-16
O35458525 Vesicular inhibitory amin yes no 0.808 0.666 0.243 2e-16
Q9H598525 Vesicular inhibitory amin yes no 0.764 0.630 0.250 4e-16
Q95KE2525 Vesicular inhibitory amin N/A no 0.819 0.676 0.237 7e-16
Q9FKS8446 Lysine histidine transpor no no 0.840 0.816 0.244 8e-14
Q9SS86455 Lysine histidine transpor no no 0.916 0.872 0.227 7e-13
>sp|P47082|AVT1_YEAST Vacuolar amino acid transporter 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AVT1 PE=1 SV=1 Back     alignment and function desciption
 Score =  140 bits (353), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 112/378 (29%), Positives = 184/378 (48%), Gaps = 44/378 (11%)

Query: 43  KTSVFKTCFNGVNALSGVGILSTPYALASGGW-LSLILLFFIAAVTFYSGLLIKRCMDVD 101
           +++  +T FN +N L G+G+L+ P  L   GW + L +L   A  TF +  L+ RC+D D
Sbjct: 207 QSTAPQTIFNSINVLIGIGLLALPLGLKYAGWVIGLTMLAIFALATFCTAELLSRCLDTD 266

Query: 102 SNIRSYPDIGDRAFGQKGRLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFT 161
             + SY D+G  AFG KGR ++S    ++L       +IL GD+L  LFP  +       
Sbjct: 267 PTLISYADLGYAAFGTKGRALISALFTLDLLGSGVSLVILFGDSLNALFPQYSTTF---- 322

Query: 162 LGGKQCFVVIIALIILPTVWLDNLSLLSYVSASGVLASVITLGSIVWTGAFDGVGFHQKG 221
                 F ++   I+ P V++  LS+LS +S  G+L++  T+  I   G +        G
Sbjct: 323 ------FKIVSFFIVTPPVFIP-LSVLSNISLLGILSTTGTVLVICCCGLYKS---SSPG 372

Query: 222 TLVN------W----KGIPSSISLYAFCYCAHPVFPTLYTSMKKKHQFSYVLLVCFFLCT 271
           +LVN      W    K +  SI L + C+  H VFP L T M+   +F   L   + + +
Sbjct: 373 SLVNPMETSMWPIDLKHLCLSIGLLSACWGGHAVFPNLKTDMRHPDKFKDCLKTTYKITS 432

Query: 272 FIYASMAIFGYMMFGSEVQSQITLNLPTSKLSSRL------AIYTTLVNPIAKYALMVTP 325
                 A+ G++MFG+ V+ +IT N+  ++   +       A+ T +  PIAK  L   P
Sbjct: 433 VTDIGTAVIGFLMFGNLVKDEITKNVLLTEGYPKFVYGLISALMTII--PIAKTPLNARP 490

Query: 326 IVNSIKMRASTQYSKRPYS---------LLISTPLVIST--VIVALVVPFFGYLMTLVGA 374
           IV+ + +  + Q+     S         L +   + I+   V++A+  P F  ++  +GA
Sbjct: 491 IVSVLDVLMNVQHIDEAASAIKRRAAKGLQVFNRIFINVVFVLIAINFPEFDKIIAFLGA 550

Query: 375 FLSVTASVILPCLCYLKI 392
            L  T  +ILPC  YL++
Sbjct: 551 GLCFTICLILPCWFYLRL 568
Required for the vacuolar uptake of large neutral amino acids including tyrosine, glutamine, asparagine, isoleucine and leucine. Requires ATP for function.
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
>sp|Q6PF45|VIAAT_XENLA Vesicular inhibitory amino acid transporter OS=Xenopus laevis GN=slc32a1 PE=2 SV=1 Back     alignment and function description
>sp|Q6DIV6|VIAAT_XENTR Vesicular inhibitory amino acid transporter OS=Xenopus tropicalis GN=slc32a1 PE=2 SV=1 Back     alignment and function description
>sp|P34579|UNC47_CAEEL Vesicular GABA transporter OS=Caenorhabditis elegans GN=unc-47 PE=1 SV=2 Back     alignment and function description
>sp|O35633|VIAAT_MOUSE Vesicular inhibitory amino acid transporter OS=Mus musculus GN=Slc32a1 PE=1 SV=3 Back     alignment and function description
>sp|O35458|VIAAT_RAT Vesicular inhibitory amino acid transporter OS=Rattus norvegicus GN=Slc32a1 PE=1 SV=1 Back     alignment and function description
>sp|Q9H598|VIAAT_HUMAN Vesicular inhibitory amino acid transporter OS=Homo sapiens GN=SLC32A1 PE=1 SV=2 Back     alignment and function description
>sp|Q95KE2|VIAAT_MACFA Vesicular inhibitory amino acid transporter OS=Macaca fascicularis GN=SLC32A1 PE=2 SV=1 Back     alignment and function description
>sp|Q9FKS8|LHT1_ARATH Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1 Back     alignment and function description
>sp|Q9SS86|LHTL4_ARATH Lysine histidine transporter-like 4 OS=Arabidopsis thaliana GN=At3g01760 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query433
225452805428 PREDICTED: vacuolar amino acid transport 0.974 0.985 0.658 1e-166
255582131404 amino acid transporter, putative [Ricinu 0.909 0.975 0.713 1e-164
359488998417 PREDICTED: vacuolar amino acid transport 0.951 0.988 0.670 1e-164
224140995388 amino acid transporter [Populus trichoca 0.893 0.997 0.700 1e-158
449520301436 PREDICTED: vacuolar amino acid transport 0.983 0.977 0.649 1e-157
359488992428 PREDICTED: vacuolar amino acid transport 0.972 0.983 0.651 1e-155
224140997386 amino acid transporter [Populus trichoca 0.889 0.997 0.716 1e-155
449459482432 PREDICTED: vacuolar amino acid transport 0.963 0.965 0.647 1e-153
356531772421 PREDICTED: vacuolar amino acid transport 0.930 0.957 0.655 1e-153
147807770421 hypothetical protein VITISV_027355 [Viti 0.953 0.980 0.611 1e-153
>gi|225452805|ref|XP_002283468.1| PREDICTED: vacuolar amino acid transporter 1 [Vitis vinifera] gi|296082904|emb|CBI22205.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  590 bits (1522), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 282/428 (65%), Positives = 349/428 (81%), Gaps = 6/428 (1%)

Query: 2   SNDDSSSLAVPFLVDEKQQGLGSKLQEIESNHLHYDDSRTTKTSVFKTCFNGVNALSGVG 61
              D  +L +P L D++     +K+++IESN    D      TS FKTCFNG+NALSGVG
Sbjct: 4   EQRDGFTLTLPLLHDDQNH---NKVEDIESNGRKQD---VGSTSFFKTCFNGLNALSGVG 57

Query: 62  ILSTPYALASGGWLSLILLFFIAAVTFYSGLLIKRCMDVDSNIRSYPDIGDRAFGQKGRL 121
           ILSTPYAL+SGGWLSL+LL  IA  TFY+GLL++RCMD   NIR+YPD+G+RAFG+ GRL
Sbjct: 58  ILSTPYALSSGGWLSLVLLLVIATATFYTGLLLRRCMDAHPNIRTYPDVGERAFGKMGRL 117

Query: 122 IVSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTVW 181
           +VSVFM  ELYLVATGFLILEGDNL NLFPN  +E+ G  + G+Q F++I+ L+ILP+VW
Sbjct: 118 LVSVFMYTELYLVATGFLILEGDNLHNLFPNMGLEIWGLMIDGRQSFIIIVGLVILPSVW 177

Query: 182 LDNLSLLSYVSASGVLASVITLGSIVWTGAFDGVGFHQKGTLVNWKGIPSSISLYAFCYC 241
           ++NL++LSY+SASGVLA +I LGSI+WTGAFDGVGF +KGT +NW+GIP+++SLYAFCYC
Sbjct: 178 VNNLNILSYISASGVLACIIILGSILWTGAFDGVGFDEKGTSLNWQGIPTAVSLYAFCYC 237

Query: 242 AHPVFPTLYTSMKKKHQFSYVLLVCFFLCTFIYASMAIFGYMMFGSEVQSQITLNLPTSK 301
           AHPVFPTLYTSM+KKHQFS VLLVCF  CT  YA+MAI GY+MFGS VQSQITLNLP  K
Sbjct: 238 AHPVFPTLYTSMRKKHQFSNVLLVCFIFCTITYAAMAILGYLMFGSNVQSQITLNLPIEK 297

Query: 302 LSSRLAIYTTLVNPIAKYALMVTPIVNSIKMRASTQYSKRPYSLLISTPLVISTVIVALV 361
           LSSR+AIYTTLVNPI+KYALMVTPIV++ +      Y KRP+SL+I + LV ST+IVAL 
Sbjct: 298 LSSRIAIYTTLVNPISKYALMVTPIVDATENWLPYYYKKRPFSLIIRSTLVFSTIIVALT 357

Query: 362 VPFFGYLMTLVGAFLSVTASVILPCLCYLKISGAYRRYGIEMIAILGIVSIGFIVAAIGT 421
           VPFFG LM+LVGAFLSVTAS++LPCLCYLKISG Y ++G+E++ I+G+V +G     +GT
Sbjct: 358 VPFFGSLMSLVGAFLSVTASILLPCLCYLKISGIYHKFGVELVIIIGVVLMGISAGIMGT 417

Query: 422 YVSLVQII 429
           Y S+V+II
Sbjct: 418 YTSIVEII 425

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255582131|ref|XP_002531860.1| amino acid transporter, putative [Ricinus communis] gi|223528510|gb|EEF30538.1| amino acid transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359488998|ref|XP_003633855.1| PREDICTED: vacuolar amino acid transporter 1-like [Vitis vinifera] gi|296082909|emb|CBI22210.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224140995|ref|XP_002323861.1| amino acid transporter [Populus trichocarpa] gi|222866863|gb|EEF03994.1| amino acid transporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449520301|ref|XP_004167172.1| PREDICTED: vacuolar amino acid transporter 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359488992|ref|XP_002283458.2| PREDICTED: vacuolar amino acid transporter 1-like [Vitis vinifera] gi|296082903|emb|CBI22204.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224140997|ref|XP_002323862.1| amino acid transporter [Populus trichocarpa] gi|222866864|gb|EEF03995.1| amino acid transporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449459482|ref|XP_004147475.1| PREDICTED: vacuolar amino acid transporter 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356531772|ref|XP_003534450.1| PREDICTED: vacuolar amino acid transporter 1-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|147807770|emb|CAN62250.1| hypothetical protein VITISV_027355 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query433
TAIR|locus:2087012405 AT3G28960 "AT3G28960" [Arabido 0.926 0.990 0.621 1.7e-137
TAIR|locus:2150911423 AT5G15240 [Arabidopsis thalian 0.969 0.992 0.594 5.6e-132
TAIR|locus:2056118550 AT2G39130 [Arabidopsis thalian 0.939 0.74 0.427 5.3e-95
TAIR|locus:2063255536 AT2G41190 [Arabidopsis thalian 0.893 0.722 0.429 1.7e-91
TAIR|locus:2185143526 AT5G02170 [Arabidopsis thalian 0.951 0.783 0.411 4e-90
TAIR|locus:2082652546 AT3G54830 "AT3G54830" [Arabido 0.792 0.628 0.461 4.3e-86
TAIR|locus:2185158550 AT5G02180 [Arabidopsis thalian 0.879 0.692 0.417 1.1e-85
TAIR|locus:2083549528 AT3G09340 "AT3G09340" [Arabido 0.969 0.795 0.395 6.2e-85
TAIR|locus:2083529524 AT3G09330 "AT3G09330" [Arabido 0.981 0.811 0.397 8e-85
TAIR|locus:2149045426 AT5G16740 [Arabidopsis thalian 0.882 0.896 0.350 2.4e-60
TAIR|locus:2087012 AT3G28960 "AT3G28960" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1346 (478.9 bits), Expect = 1.7e-137, P = 1.7e-137
 Identities = 250/402 (62%), Positives = 313/402 (77%)

Query:    29 IESNHLHYDDSRTTKTSVFKTCFNGVNALSGVGILSTPYALASGGWLSLILLFFIAAVTF 88
             +E ++          +S FKTCFN +NALSG+GILS PY+LA GGWLSL LL  +A   F
Sbjct:     1 MEEDNQEIQRDNVGSSSFFKTCFNALNALSGIGILSVPYSLARGGWLSLSLLLLLAVTAF 60

Query:    89 YSGLLIKRCMDVDSNIRSYPDIGDRAFGQKGRLIVSVFMNIELYLVATGFLILEGDNLEN 148
             Y+ LLI +CM+ D NI++YPDIG+RAFG+ GR+IVSVFM++ELYLV TGFLILEGDNL N
Sbjct:    61 YTSLLITKCMNADRNIKTYPDIGERAFGRPGRIIVSVFMHLELYLVTTGFLILEGDNLHN 120

Query:   149 LFPNTAIELGGFTLGGKQCFVVIIALIILPTVWLDNLSLLSYVSASGVLASVITLGSIVW 208
             LFP   IE+ G  L GKQ F+  +A +I+PT+W DNLS+LSYVS SGVLA+ +TLGSI W
Sbjct:   121 LFPGFTIEMIGLRLNGKQAFMATVAFVIMPTLWWDNLSVLSYVSMSGVLATTVTLGSISW 180

Query:   209 TGAFDGVGFHQKGTLVNWKGIPSSISLYAFCYCAHPVFPTLYTSMKKKHQFSYVLLVCFF 268
              GAFDG+GFHQKG L+NW GIP+++SLYAFCY AHPV PTLY+SMK KHQF+ VLL+CF 
Sbjct:   181 IGAFDGIGFHQKGKLINWSGIPTALSLYAFCYGAHPVLPTLYSSMKSKHQFNNVLLICFI 240

Query:   269 LCTFIYASMAIFGYMMFGSEVQSQITLNLPTSKLSSRLAIYTTLVNPIAKYALMVTPIVN 328
             LCT  Y SMA+ GY+M+GS+  SQITLNLP  K SS++AIYTTLVNP+AKYALM+TP VN
Sbjct:   241 LCTIGYTSMAVLGYLMYGSQTLSQITLNLPIHKTSSKVAIYTTLVNPVAKYALMITPTVN 300

Query:   329 SIKMRASTQYSKRPY-SLLISTPLVISTVIVALVVPFFGYLMTLVGAFLSVTASVILPCL 387
             +IK    ++YSK+ Y  LLIST  +IS+V++A  +PFFGY+M+LVGA LSVT S++LPCL
Sbjct:   301 TIKDWFPSRYSKKAYLHLLISTFFIISSVVIAETLPFFGYMMSLVGALLSVTVSILLPCL 360

Query:   388 CYLKISGAYRRYGIEMIAILGIVSIGFIVAAIGTYVSLVQII 429
             CYLKI G Y++ G E I + G+V +   V  IGTY++L  II
Sbjct:   361 CYLKIFGNYKKIGCETIMLFGMVVMSVFVGVIGTYIALRDII 402
GO:0006865 "amino acid transport" evidence=ISS
GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS
GO:0016020 "membrane" evidence=ISS
GO:0005774 "vacuolar membrane" evidence=IDA
TAIR|locus:2150911 AT5G15240 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2056118 AT2G39130 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2063255 AT2G41190 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2185143 AT5G02170 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082652 AT3G54830 "AT3G54830" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2185158 AT5G02180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083549 AT3G09340 "AT3G09340" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083529 AT3G09330 "AT3G09330" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2149045 AT5G16740 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query433
pfam01490406 pfam01490, Aa_trans, Transmembrane amino acid tran 4e-49
COG0814415 COG0814, SdaC, Amino acid permeases [Amino acid tr 4e-24
PLN03074473 PLN03074, PLN03074, auxin influx permease; Provisi 2e-05
PTZ00206467 PTZ00206, PTZ00206, amino acid transporter; Provis 6e-05
>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein Back     alignment and domain information 
 Score =  172 bits (437), Expect = 4e-49
 Identities = 111/412 (26%), Positives = 184/412 (44%), Gaps = 35/412 (8%)

Query: 43  KTSVFKTCFNGVNALSGVGILSTPYALASGGWL-SLILLFFIAAVTFYSGLLIKRC---- 97
             S ++  FN + A+ G G+LS PYA    GW+  LILL  +  ++ Y+  L+ +C    
Sbjct: 2   TISAWQAVFNLIKAIIGAGVLSLPYAFKQLGWIPGLILLVIVGLISLYTLHLLVQCSKYV 61

Query: 98  -MDVDSNIRSYPDIGDRAFGQKGRLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIE 156
                   +SY D+G R FG KG+L++   + + L+ V   +LI  GDNL  +F +    
Sbjct: 62  DKVKGKRRKSYGDLGYRLFGPKGKLLILFAILVNLFGVCISYLIFAGDNLPAIFDSFF-- 119

Query: 157 LGGFTLGGKQC-FVVIIALIILPTVWLDNLSLLSYVSASGVLASVITLGSIVWTGAFDGV 215
               T       F++I  LI +P  ++ NLS LS    S V A       I+     +  
Sbjct: 120 ---DTCHISLVYFIIIFGLIFIPLSFIPNLSALSI--LSLVAAVSSLYIVILVLSVAELG 174

Query: 216 GFHQKG-------TLVNWKGIPSSISLYAFCYCAHPVFPTLYTSMKKKHQFS---YVLLV 265
               +G       T +    +  +I +  F +  H V   +  +MK   +F     VLL 
Sbjct: 175 VLTAQGVGSLGAKTNIKLARLFLAIGIIVFAFEGHAVLLPIQNTMKSPSKFKAMTKVLLT 234

Query: 266 CFFLCTFIYASMAIFGYMMFGSEVQSQITLNLPTSKLSSRLAIYTTLVNPIAKYALMVTP 325
              + T +Y  + + GY+ FG+ V+  I LNLP S     +A    +++ +  Y L   P
Sbjct: 235 AIIIVTVLYILVGLVGYLAFGNNVKGNILLNLPKSDWLIDIANLLLVLHLLLSYPLQAFP 294

Query: 326 IV----NSIKMRASTQYSKRPYSLL---ISTPLVISTVIVALVVPFFGYLMTLVGAFLSV 378
           I     N +  + ++        LL   I + LV+ T ++A+ VPF G  ++LVGA    
Sbjct: 295 IRQIVENLLFRKGASGKHNPKSKLLRVVIRSGLVVITYLIAISVPFLGDFLSLVGATSGA 354

Query: 379 TASVILPCLCYLKISG----AYRRYGIEMIAILGIVSIGFIVAAIGTYVSLV 426
             + ILP L +LK+      +  +     I  +  + IG ++ A G    ++
Sbjct: 355 PLTFILPPLFHLKLKKTKKKSLEKLWKPDILDVICIVIGLLLMAYGVAGLII 406

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406
>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|215559 PLN03074, PLN03074, auxin influx permease; Provisional Back     alignment and domain information
>gnl|CDD|240313 PTZ00206, PTZ00206, amino acid transporter; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 433
KOG1304449 consensus Amino acid transporters [Amino acid tran 100.0
PTZ00206467 amino acid transporter; Provisional 100.0
KOG1303437 consensus Amino acid transporters [Amino acid tran 100.0
PLN03074473 auxin influx permease; Provisional 100.0
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 100.0
KOG1305411 consensus Amino acid transporter protein [Amino ac 100.0
KOG4303524 consensus Vesicular inhibitory amino acid transpor 100.0
COG0814415 SdaC Amino acid permeases [Amino acid transport an 100.0
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 99.96
TIGR00837381 araaP aromatic amino acid transport protein. aroma 99.95
PRK10483414 tryptophan permease; Provisional 99.95
PRK09664415 tryptophan permease TnaB; Provisional 99.95
PRK15132403 tyrosine transporter TyrP; Provisional 99.95
PRK13629443 threonine/serine transporter TdcC; Provisional 99.89
TIGR00814397 stp serine transporter. The HAAAP family includes 99.88
PRK10655438 potE putrescine transporter; Provisional 99.81
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 99.79
PRK10249458 phenylalanine transporter; Provisional 99.76
PRK10644445 arginine:agmatin antiporter; Provisional 99.76
TIGR00912359 2A0309 spore germination protein (amino acid perme 99.76
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 99.76
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 99.75
PRK15049499 L-asparagine permease; Provisional 99.75
TIGR00909429 2A0306 amino acid transporter. 99.75
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 99.75
TIGR00906 557 2A0303 cationic amino acid transport permease. 99.74
PRK10746461 putative transport protein YifK; Provisional 99.74
PRK11021410 putative transporter; Provisional 99.74
PRK11387471 S-methylmethionine transporter; Provisional 99.73
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 99.72
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 99.72
TIGR00930 953 2a30 K-Cl cotransporter. 99.72
KOG1287479 consensus Amino acid transporters [Amino acid tran 99.71
PRK10238456 aromatic amino acid transporter; Provisional 99.71
PRK10580457 proY putative proline-specific permease; Provision 99.7
PRK10836489 lysine transporter; Provisional 99.7
TIGR00908442 2A0305 ethanolamine permease. The three genes used 99.68
TIGR00913478 2A0310 amino acid permease (yeast). 99.66
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 99.65
TIGR00911501 2A0308 L-type amino acid transporter. 99.64
PRK10197446 gamma-aminobutyrate transporter; Provisional 99.64
PRK11357445 frlA putative fructoselysine transporter; Provisio 99.61
COG0833541 LysP Amino acid transporters [Amino acid transport 99.6
PF03845320 Spore_permease: Spore germination protein; InterPr 99.59
KOG1286554 consensus Amino acid transporters [Amino acid tran 99.53
COG0531466 PotE Amino acid transporters [Amino acid transport 99.53
TIGR00907482 2A0304 amino acid permease (GABA permease). 99.5
TIGR03428475 ureacarb_perm permease, urea carboxylase system. A 99.47
PRK15238496 inner membrane transporter YjeM; Provisional 99.42
TIGR03813474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 99.39
TIGR00910 507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 99.31
PF00324478 AA_permease: Amino acid permease; InterPro: IPR004 99.24
KOG1289550 consensus Amino acid transporters [Amino acid tran 99.15
KOG3832319 consensus Predicted amino acid transporter [Genera 99.06
COG3949349 Uncharacterized membrane protein [Function unknown 98.95
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 98.61
COG1457442 CodB Purine-cytosine permease and related proteins 98.61
PRK11375484 allantoin permease; Provisional 98.48
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 98.47
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 98.44
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 98.41
TIGR00835425 agcS amino acid carrier protein. Members of the AG 98.38
COG0591493 PutP Na+/proline symporter [Amino acid transport a 98.36
TIGR00813407 sss transporter, SSS family. have different number 98.34
PRK12488 549 acetate permease; Provisional 98.32
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 98.27
PRK09442483 panF sodium/panthothenate symporter; Provisional 98.21
PRK11017404 codB cytosine permease; Provisional 98.2
PRK09395 551 actP acetate permease; Provisional 98.1
TIGR02711 549 symport_actP cation/acetate symporter ActP. Member 98.02
PRK00701439 manganese transport protein MntH; Reviewed 97.96
PRK15419502 proline:sodium symporter PutP; Provisional 97.94
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 97.88
TIGR03648 552 Na_symport_lg probable sodium:solute symporter, VC 97.87
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 97.86
COG0733439 Na+-dependent transporters of the SNF family [Gene 97.85
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 97.75
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 97.74
PRK10484523 putative transporter; Provisional 97.71
PF02554376 CstA: Carbon starvation protein CstA; InterPro: IP 97.54
KOG1288 945 consensus Amino acid transporters [Amino acid tran 97.32
KOG2082 1075 consensus K+/Cl- cotransporter KCC1 and related tr 97.22
PF00209523 SNF: Sodium:neurotransmitter symporter family; Int 97.21
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 97.18
PF01566358 Nramp: Natural resistance-associated macrophage pr 97.14
PF02028485 BCCT: BCCT family transporter; InterPro: IPR000060 97.01
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 96.92
COG1966 575 CstA Carbon starvation protein, predicted membrane 96.61
PRK15015 701 carbon starvation protein A; Provisional 96.55
KOG2083 643 consensus Na+/K+ symporter [Inorganic ion transpor 95.85
COG4147529 DhlC Predicted symporter [General function predict 95.84
PRK09928 679 choline transport protein BetT; Provisional 95.42
PHA02764399 hypothetical protein; Provisional 95.09
KOG2349 585 consensus Na+:iodide/myo-inositol/multivitamin sym 94.43
TIGR00842453 bcct choline/carnitine/betaine transport. properti 94.19
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 94.14
PRK15433439 branched-chain amino acid transport system 2 carri 93.84
PRK09950506 putative transporter; Provisional 93.72
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 92.8
COG4145473 PanF Na+/panthothenate symporter [Coenzyme metabol 91.72
COG1114431 BrnQ Branched-chain amino acid permeases [Amino ac 90.71
KOG3660 629 consensus Sodium-neurotransmitter symporter [Signa 90.08
COG1115452 AlsT Na+/alanine symporter [Amino acid transport a 89.92
PRK03356504 L-carnitine/gamma-butyrobetaine antiporter; Provis 89.83
TIGR01197390 nramp NRAMP (natural resistance-associated macroph 86.83
PRK15433439 branched-chain amino acid transport system 2 carri 85.91
PLN02680232 carbon-monoxide oxygenase 83.4
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=9.1e-57  Score=423.01  Aligned_cols=384  Identities=24%  Similarity=0.361  Sum_probs=341.8

Q ss_pred             CCCCCCchhHHHHHHHHhhhhhhhchhHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHchhh-----CCCCCCHHHHHH
Q 013930           39 SRTTKTSVFKTCFNGVNALSGVGILSTPYALASGGWL-SLILLFFIAAVTFYSGLLIKRCMDV-----DSNIRSYPDIGD  112 (433)
Q Consensus        39 ~~~~~~s~~~~~~~li~~~iG~GiL~lP~a~~~~G~~-g~i~l~~~~~~~~~s~~~l~~~~~~-----~~~~~~y~~l~~  112 (433)
                      +.++..|..++..|+.++++|+|+|++|+||+++|++ |.+...+.++++.|+++.+++|.++     .....+|.+.++
T Consensus        42 ~~~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~  121 (449)
T KOG1304|consen   42 DREHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAE  121 (449)
T ss_pred             cCCCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHH
Confidence            3456799999999999999999999999999999999 9999999999999999999998654     223356666655


Q ss_pred             ----------HhcCccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccccccCCchhHHHHHHHHHhhcccc
Q 013930          113 ----------RAFGQKGRLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTVWL  182 (433)
Q Consensus       113 ----------~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~  182 (433)
                                +.+|+++|.+++..+.++++|.|++|++++++.++++.+.....     ..+.+.++.+..+..+++++.
T Consensus       122 ~a~~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~~~-----~~s~~~~i~~~~~~~lll~~I  196 (449)
T KOG1304|consen  122 SAMEGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHSPG-----VLSVRLYILIQLPPLLLLNLI  196 (449)
T ss_pred             HHHcCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccCCC-----CccHHHHHHHHHHHHHHHHHH
Confidence                      45688999999999999999999999999999999999833221     113557888888899999999


Q ss_pred             cCCCchHHHHHHHHHHHHHHHHhhhhcccccccccccCcccccCCchhHhHhHhhhccccccchhhHHhhccccccch--
Q 013930          183 DNLSLLSYVSASGVLASVITLGSIVWTGAFDGVGFHQKGTLVNWKGIPSSISLYAFCYCAHPVFPTLYTSMKKKHQFS--  260 (433)
Q Consensus       183 ~~l~~l~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~--  260 (433)
                      ||+|.++.+|.++.+..+..+.++.++...+.++.++.+...++.+++.++|+.+|||+|+.++.|++++||+|++++  
T Consensus       197 r~Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P~~F~g~  276 (449)
T KOG1304|consen  197 RNLKILSPFSLFANVFILVGLAIIMYYLVQDLPPTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSMKKPQKFPGP  276 (449)
T ss_pred             HhhHHhhHHHHHHHHHHHHHHHHHHHHHHhccCCccccccccchhhhHHHHHHHHHHhccceEEEehhhcccChhhcCCc
Confidence            999999999999999999988888888776655555555556689999999999999999999999999999999999  


Q ss_pred             -hHHHHHHHHHHHHHHHHHhHHHhhccccchhHhhhcCCCCchhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcccCC-
Q 013930          261 -YVLLVCFFLCTFIYASMAIFGYMMFGSEVQSQITLNLPTSKLSSRLAIYTTLVNPIAKYALMVTPIVNSIKMRASTQY-  338 (433)
Q Consensus       261 -~~~~~~~~i~~i~y~~~~~~gy~~fg~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~-  338 (433)
                       +++..++.+++++|..+|++||+.||+++++.+++|+|+ ++.....+.++.+..+.+||++++|..+.+|+.+.++- 
T Consensus       277 ~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~-~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~i~~k~~  355 (449)
T KOG1304|consen  277 FGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQ-EILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPGIRKKFS  355 (449)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCc-cHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHhHHHhcC
Confidence             999999999999999999999999999999999999999 78878889999999999999999999999998665332 


Q ss_pred             --CCCCceehhhHHHHHHHHHHHhhccchHHHHHHHhhhhhhhhhhhhhhHHHHHHhcccc--cchhHHHHHHHHHHHHH
Q 013930          339 --SKRPYSLLISTPLVISTVIVALVVPFFGYLMTLVGAFLSVTASVILPCLCYLKISGAYR--RYGIEMIAILGIVSIGF  414 (433)
Q Consensus       339 --~~~~~~~~~~~~~~~~~~~ia~~~~~~~~v~~l~G~~~~~~~~~ilP~~~~l~~~~~~~--~~~~~~~~~~~~~~~g~  414 (433)
                        ++++.....|..++++++.+|..+|+++.+++++|+++++.+++++|++++++.+++++  +.+|+.+.|..++++|+
T Consensus       356 ~~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni~l~~~G~  435 (449)
T KOG1304|consen  356 ENRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNIVLIVFGV  435 (449)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCceehHHHHHHHHHHHHH
Confidence              24456789999999999999999999999999999999999999999999999988774  56799999999999999


Q ss_pred             HHHhHHHHHHHHHH
Q 013930          415 IVAAIGTYVSLVQI  428 (433)
Q Consensus       415 ~~~~~g~~~~i~~l  428 (433)
                      +..+.|||.++.++
T Consensus       436 ~~~v~Gty~si~~i  449 (449)
T KOG1304|consen  436 FGFVYGTYTSIKEI  449 (449)
T ss_pred             HHHHHHHhhhhhcC
Confidence            99999999999763

>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] Back     alignment and domain information
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>KOG3832 consensus Predicted amino acid transporter [General function prediction only] Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex Back     alignment and domain information
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms] Back     alignment and domain information
>PRK15015 carbon starvation protein A; Provisional Back     alignment and domain information
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>PRK09928 choline transport protein BetT; Provisional Back     alignment and domain information
>PHA02764 hypothetical protein; Provisional Back     alignment and domain information
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00842 bcct choline/carnitine/betaine transport Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>PRK09950 putative transporter; Provisional Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism] Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms] Back     alignment and domain information
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism] Back     alignment and domain information
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional Back     alignment and domain information
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>PLN02680 carbon-monoxide oxygenase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query433
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 99.84
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 99.77
4djk_A 511 Probable glutamate/gamma-aminobutyrate antiporter; 99.64
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 99.01
3dh4_A 530 Sodium/glucose cotransporter; membrane protein, sy 98.12
2a65_A519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 97.85
2xq2_A 593 Sodium/glucose cotransporter; transport protein, i 97.68
4ain_A539 Glycine betaine transporter BETP; membrane protein 94.07
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
Probab=99.84  E-value=1.1e-18  Score=172.33  Aligned_cols=242  Identities=13%  Similarity=0.138  Sum_probs=177.5

Q ss_pred             CCCCCCchhHHHHHHHHhhhhhhhchhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHchhhCCCCCCHHHHHHHhcCcc
Q 013930           39 SRTTKTSVFKTCFNGVNALSGVGILSTPYALASGGWLSLILLFFIAAVTFYSGLLIKRCMDVDSNIRSYPDIGDRAFGQK  118 (433)
Q Consensus        39 ~~~~~~s~~~~~~~li~~~iG~GiL~lP~a~~~~G~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~~  118 (433)
                      +++|+.+.++.++..+++++|+|++.+|...++.|..+++..++.++........+.|..++.|+.....+..++.+||+
T Consensus         5 ~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~~~~~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~~   84 (445)
T 3l1l_A            5 ADAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGIAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFGPF   84 (445)
T ss_dssp             --CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTHHHHHHHHSCHH
T ss_pred             CCCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCchhhHHhHcCCh
Confidence            46789999999999999999999999999888888768888888888899999999999999988889999999999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccccccCCchhHHHHHHHHHhhcccccCCCchHHHHHHHHHH
Q 013930          119 GRLIVSVFMNIELYLVATGFLILEGDNLENLFPNTAIELGGFTLGGKQCFVVIIALIILPTVWLDNLSLLSYVSASGVLA  198 (433)
Q Consensus       119 ~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~  198 (433)
                      .+++..+..++........+....++++..+++....+   +   ....+.+.+.++.. ....++.|...+++.+....
T Consensus        85 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~-~in~~g~~~~~~~~~~~~~~  157 (445)
T 3l1l_A           85 LGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDP---W---VLTITCVVVLWIFV-LLNIVGPKMITRVQAVATVL  157 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGGSH---H---HHHHHHHHHHHHHH-HHHHHCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcccccc---H---HHHHHHHHHHHHHH-HHHHhchHHHHHHHHHHHHH
Confidence            99999999998888888888888899888877643211   0   01112222222222 22245667777776666555


Q ss_pred             HHHHHHhhhhccccc-ccc-cccC---cccccCCchhHhHhHhhhccccccchhhHHhhcccc-ccchhHHHHHHHHHHH
Q 013930          199 SVITLGSIVWTGAFD-GVG-FHQK---GTLVNWKGIPSSISLYAFCYCAHPVFPTLYTSMKKK-HQFSYVLLVCFFLCTF  272 (433)
Q Consensus       199 ~~~~~~~~i~~~~~~-~~~-~~~~---~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~~~~~~~~~~~i~~i  272 (433)
                      .+..++.++..+... +.+ ..+.   ....++.++..++....|+|.|++.+..+.+|+||| |+.+|++..+..++.+
T Consensus       158 ~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~~~~~~~~~~  237 (445)
T 3l1l_A          158 ALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAV  237 (445)
T ss_dssp             HHHHHHHHHHTTSTTCCCCCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhChhhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHHHHHHHHHHHH
Confidence            444444333332221 111 1111   111235678899999999999999999999999999 6799999999999999


Q ss_pred             HHHHHHhHHHhhccc
Q 013930          273 IYASMAIFGYMMFGS  287 (433)
Q Consensus       273 ~y~~~~~~gy~~fg~  287 (433)
                      +|.+.........+.
T Consensus       238 ~y~~~~~~~~~~~~~  252 (445)
T 3l1l_A          238 CYVLSTTAIMGMIPN  252 (445)
T ss_dssp             HHHHHHHHHHHHSCT
T ss_pred             HHHHHHHHHHhcCCH
Confidence            999998887776654
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query433
d2a65a1 509 Na(+):neurotransmitter symporter homologue LeuT {A 97.33
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.33  E-value=0.069  Score=50.42  Aligned_cols=102  Identities=18%  Similarity=0.167  Sum_probs=61.6

Q ss_pred             CchhHHHHHHHHhhhhhhh-chhHHHHHh-hhHH----HHHHHHHHHHHHHHHHHHHHHchhhCCCCCCHHHHHHHhcCc
Q 013930           44 TSVFKTCFNGVNALSGVGI-LSTPYALAS-GGWL----SLILLFFIAAVTFYSGLLIKRCMDVDSNIRSYPDIGDRAFGQ  117 (433)
Q Consensus        44 ~s~~~~~~~li~~~iG~Gi-L~lP~a~~~-~G~~----g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~  117 (433)
                      .|..+-++..++..+|.|- .-.|+-..+ .|..    -.+.+++.++=..+.=..+.+..+ ..+...+..+.....+.
T Consensus         5 ~s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~~-~g~i~~~~~i~~~~~~~   83 (509)
T d2a65a1           5 ATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGG-AQGHGTTPAIFYLLWRN   83 (509)
T ss_dssp             SCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH-TTTCCSHHHHHHHHSCS
T ss_pred             CChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCC-CCcccHHHHHHHHhccC
Confidence            5678889999999999986 568998765 4533    333334444433444445555434 34678888888877665


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 013930          118 KGRLIVSVFMNIELYLVATGFLILEGDNL  146 (433)
Q Consensus       118 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l  146 (433)
                      +......+...+..+..++-|.+..+-.+
T Consensus        84 ~~~~giG~~~~~~~~~i~~yy~vi~~w~l  112 (509)
T d2a65a1          84 RFAKILGVFGLWIPLVVAIYYVYIESWTL  112 (509)
T ss_dssp             HHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            43334444444444555555555555433