Citrus Sinensis ID: 013952

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430---
Protein Sequence
MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLDVLKNEGLSFASKI
Secondary Structure (PSIPRED)
cccccccEEEEcccHHHHHHHHHHHHcccccccEEEEccccccccccccccccccccccccccccccccccccccccHHHHHHcccEEEccccEEEEEccccEEEcccccEEcccEEEEcccccccccccccccccccccEEEEccHHHHHHHHHHHHcccccEEEEEcccHHHHHHHHHHHHccccEEEEccccccccccccHHHHHHHHHHHHHcccEEEccccEEEEEEcccccEEEEEEccccEEEccEEEEccccccccHHHHHccccccccEEEccccccccccEEEccccccccccccccccEEccHHHHHHHHHHHHHHHccccccccccccccccEEEcccccccEEEEEcccccEEEEEcccccccccEEEEEEEEccEEEEEEEccccHHHHHHHHHHHHcccccccHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEccHHHHHHHHHHHHHccccccEEEEEcccccccccccccHHHHccccccccccEEEccccccccccHHHHHHcccEEEEccEEEEEcccccEEEEccccEEEccEEEEEccccccccccccccccccccEEEEEcHHHHHHHHHHHcccccccEEEEcccHHHHHHHHHHHHHccEEEEEccccccccHHccHHHHHHHHHHHHHcccEEEEcEEEEEEEEccccEEEEEEEccccEEcccEEEEEEEccccHHHHHHccccccccEEEccccccccccEEEEEccccccccccccEEEEEccHHHHHHHHHHHHHHHcccccccccccccccEEEccccccEEEEEEccccccEEEEEcccccccccEEEEEEEccEEEEEEEccccHHHHHHHHHHHHcccccccHHHHHcccccHHHHc
Coil and Loop (DISEMBL)
MAEKSFKYVILGGGVSAGYAAREFakqgvkpgelaiiskevapyerpalskaylfpegtarlpgfhvcvgsggerllpewykEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGstvlrltdfgvegadaknifYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKinnidvsmvypepwcmprlfTADIAAFYEGyyankgikiikgtvavgfttnadgevkevklkdgrtleaDIVVVGvggrplislfkgqvaenkggietddffktsaddvyavgdvatfPMKLYREMRRVEHVDHARKSAEQAVKTIMAteggktvtgydylpyfysrafdlswqfygdnvgdtvlfgdndlasathkfgtywikdgKVVGVFlesgtpeeNKAIAKVARVQPSVESLDVLKNEglsfaski
Flexible Loop (DISEMBL)
MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIkakkngkavvVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTtnadgevkevklkdgrtleaDIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKtimateggktvtgYDYLPYFYSRAFDLSWQFYGDNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKvarvqpsvesldvlkneglsfaski
Low Complexity Region (SEG)
MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEaikakkngkavvvgggYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLDVLKNEGLSFASKI
Disordered region (IsUnstruct)
*****FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHA*****QAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLES************************************
Disordered Region (DISOPRED)
****SFK*VILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLDVLKNEGLSFASKI
Disordered Region (DISEMBL)
MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLDVLKNEGLSFASKI
Disordered Region (DISPRO)
****SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLDVLKNEGLSFA***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLDVLKNEGLSFASKI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	433	2.2.26 [Sep-21-2011]
Q43497	433	Monodehydroascorbate redu	N/A	no	0.997	0.997	0.831	0.0
Q40977	433	Monodehydroascorbate redu	N/A	no	0.990	0.990	0.809	0.0
Q42711	434	Monodehydroascorbate redu	N/A	no	1.0	0.997	0.820	0.0
Q9LFA3	434	Probable monodehydroascor	yes	no	1.0	0.997	0.778	0.0
Q93WJ8	435	Probable monodehydroascor	no	no	0.995	0.990	0.766	0.0
Q9SR59	441	Probable monodehydroascor	no	no	0.995	0.977	0.688	1e-164
Q9LK94	488	Probable monodehydroascor	no	no	0.976	0.866	0.549	1e-126
P92947	493	Monodehydroascorbate redu	no	no	0.930	0.817	0.475	1e-100
P83966	166	Monodehydroascorbate redu	N/A	no	0.327	0.855	0.605	2e-51
D5IGG6	414	Ferredoxin--NAD(P)(+) red	N/A	no	0.859	0.898	0.283	1e-29

>sp|Q43497|MDAR_SOLLC Monodehydroascorbate reductase OS=Solanum lycopersicum GN=AFRR PE=1 SV=1

 Score =  736 bits (1900), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/434 (83%), Positives = 393/434 (90%), Gaps = 2/434 (0%)

Query: 1   MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGT 59
           MAEKSFKYVI+GGGVSAGYAAREFAKQGVKPGELAIISKE VAPYERPALSKAYLFPEG 
Sbjct: 1   MAEKSFKYVIVGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGA 60

Query: 60  ARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVI 119
           ARLPGFHVCVGSGGER LPEWY EKGI LILSTEIV+AD+ASKTL+SA G  FKYQ LVI
Sbjct: 61  ARLPGFHVCVGSGGERQLPEWYAEKGISLILSTEIVKADLASKTLVSAAGESFKYQTLVI 120

Query: 120 ATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSA 179
           ATG+TVL+L+DFGV+GAD+KNIFYLREIDDAD+LVEA+KAKKNGKAVVVGGGYIGLELSA
Sbjct: 121 ATGTTVLKLSDFGVQGADSKNIFYLREIDDADQLVEALKAKKNGKAVVVGGGYIGLELSA 180

Query: 180 ALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVK 239
            L++NNI+V+MVYPEPWCMPRLFT  IAAFYEGYY NKG+ IIKGTVAVGF T+ +GEVK
Sbjct: 181 VLRLNNIEVNMVYPEPWCMPRLFTEGIAAFYEGYYKNKGVNIIKGTVAVGFDTHPNGEVK 240

Query: 240 EVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVAT 299
           EVKLKDGR LEADIVVVGVG RPL +LFKGQV E KGGI+TD FFKTS  DVYAVGDVAT
Sbjct: 241 EVKLKDGRVLEADIVVVGVGARPLTTLFKGQVEEEKGGIKTDAFFKTSVPDVYAVGDVAT 300

Query: 300 FPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYG 359
           FP+K+Y E+RRVEHVDH+RKSAEQAVK I A+E GK+V  YDYLPYFYSRAFDLSWQFYG
Sbjct: 301 FPLKMYNEIRRVEHVDHSRKSAEQAVKAIFASEQGKSVDEYDYLPYFYSRAFDLSWQFYG 360

Query: 360 DNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESL 419
           DNVG+TVLFGD D  SATHKFG YWIKDGK+VG FLESG+PEENKAIAKVA+VQP   +L
Sbjct: 361 DNVGETVLFGDADPNSATHKFGQYWIKDGKIVGAFLESGSPEENKAIAKVAKVQPPA-TL 419

Query: 420 DVLKNEGLSFASKI 433
           D L  EG+SFASKI
Sbjct: 420 DQLAQEGISFASKI 433

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.
Solanum lycopersicum (taxid: 4081)
EC: 1EC: .EC: 6EC: .EC: 5EC: .EC: 4

>sp|Q40977|MDAR_PEA Monodehydroascorbate reductase OS=Pisum sativum PE=1 SV=1

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/430 (80%), Positives = 379/430 (88%), Gaps = 1/430 (0%)

Query: 5   SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLP 63
           SFKY+I+GGGVSAGYAAREF KQGV PGELAIISKE VAPYERPALSKAYLFPE  ARLP
Sbjct: 4   SFKYIIIGGGVSAGYAAREFVKQGVHPGELAIISKEAVAPYERPALSKAYLFPESPARLP 63

Query: 64  GFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGS 123
           GFH CVGSGGERLLPEWY EKGI+L LSTEIV AD+A+K L SA G  F YQ LVIATGS
Sbjct: 64  GFHTCVGSGGERLLPEWYSEKGIQLYLSTEIVSADLAAKFLKSANGEHFDYQTLVIATGS 123

Query: 124 TVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKI 183
            V+RLTDFGV GA+AKNIFYLRE+DDADKL EAIK KKN K VVVGGGYIGLELSA LK+
Sbjct: 124 AVIRLTDFGVIGANAKNIFYLREVDDADKLYEAIKRKKNAKRVVVGGGYIGLELSAVLKL 183

Query: 184 NNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL 243
           N++DV+MVYPEPWCMPRLFT++IAAFYEGYYANKGI IIKGTVAVGFT N+DGEVKEVKL
Sbjct: 184 NDLDVTMVYPEPWCMPRLFTSEIAAFYEGYYANKGINIIKGTVAVGFTANSDGEVKEVKL 243

Query: 244 KDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMK 303
           KDGR LEADIV+VGVGGRP ISLFKGQV E  GGI+TD FFKTS  DVYAVGDVATFP+K
Sbjct: 244 KDGRVLEADIVIVGVGGRPQISLFKGQVEEQHGGIKTDSFFKTSVPDVYAVGDVATFPLK 303

Query: 304 LYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG 363
           LY ++RRVEHVDHARKSAEQA K I A + GK+V  YDYLPYFYSR+FDLSWQFYGDNVG
Sbjct: 304 LYNDVRRVEHVDHARKSAEQAAKAIFAADVGKSVEEYDYLPYFYSRSFDLSWQFYGDNVG 363

Query: 364 DTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLDVLK 423
           +TVLFGDND AS+  KFGTYWIK+GKVVG FLE GTP+ENKAIAKVAR +P+VE ++ L 
Sbjct: 364 ETVLFGDNDPASSKPKFGTYWIKEGKVVGAFLEGGTPDENKAIAKVARAKPAVEDVNQLA 423

Query: 424 NEGLSFASKI 433
            EGLSFASKI
Sbjct: 424 EEGLSFASKI 433

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Pisum sativum (taxid: 3888)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|Q42711|MDARS_CUCSA Monodehydroascorbate reductase, seedling isozyme OS=Cucumis sativus PE=2 SV=1

 Score =  696 bits (1795), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/434 (82%), Positives = 391/434 (90%), Gaps = 1/434 (0%)

Query: 1   MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGT 59
           MA+++FKYVILGGGV+AGYAAREF KQG+ PGELAIISKE VAPYERPALSKAYLFPE  
Sbjct: 1   MADETFKYVILGGGVAAGYAAREFVKQGLNPGELAIISKEAVAPYERPALSKAYLFPESP 60

Query: 60  ARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVI 119
           ARLPGFHVCVGSGGERLLP+WYKEKGIELILSTEIV AD+ +K L SA G I+ YQ L+I
Sbjct: 61  ARLPGFHVCVGSGGERLLPDWYKEKGIELILSTEIVEADLPAKRLRSAHGKIYNYQTLII 120

Query: 120 ATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSA 179
           ATGSTV++L+DFGV+GADAKNIFYLREIDDAD+LVEAIKAK+NGK VVVGGGYIGLEL A
Sbjct: 121 ATGSTVIKLSDFGVQGADAKNIFYLREIDDADQLVEAIKAKENGKVVVVGGGYIGLELGA 180

Query: 180 ALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVK 239
           AL+INN DVSMVYPEPWCMPRLFT +IAAFYEGYYA KGI IIKGTVAVGFT + +GEVK
Sbjct: 181 ALRINNFDVSMVYPEPWCMPRLFTPEIAAFYEGYYAQKGITIIKGTVAVGFTVDTNGEVK 240

Query: 240 EVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVAT 299
           EVKLKDGR LEADIVVVGVG RPL SLFKGQ+ E KGGI+TD+FFKTS  DVYAVGDVAT
Sbjct: 241 EVKLKDGRVLEADIVVVGVGARPLTSLFKGQIVEEKGGIKTDEFFKTSVPDVYAVGDVAT 300

Query: 300 FPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYG 359
           FP+KLY E+RRVEHVDH+RKSAEQAVK I A+E GK +  YDYLPYFYSR+FDLSWQFYG
Sbjct: 301 FPLKLYNELRRVEHVDHSRKSAEQAVKAIKASEEGKAIEEYDYLPYFYSRSFDLSWQFYG 360

Query: 360 DNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESL 419
           DNVGD VLFGDN   SATHKFG+YWIKDGKVVG FLESG+PEENKAIAKVAR+QPSVES 
Sbjct: 361 DNVGDAVLFGDNSPDSATHKFGSYWIKDGKVVGAFLESGSPEENKAIAKVARIQPSVESS 420

Query: 420 DVLKNEGLSFASKI 433
           D+L  EG+SFASK+
Sbjct: 421 DLLLKEGISFASKV 434

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Cucumis sativus (taxid: 3659)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|Q9LFA3|MDAR3_ARATH Probable monodehydroascorbate reductase, cytoplasmic isoform 3 OS=Arabidopsis thaliana GN=At3g52880 PE=1 SV=1

 Score =  675 bits (1741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/434 (77%), Positives = 389/434 (89%), Gaps = 1/434 (0%)

Query: 1   MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGT 59
           MAEKSFKY+ILGGGVSAGYAA+EFA QGV+PGELA+ISKE VAPYERPALSK YLFPEG 
Sbjct: 1   MAEKSFKYIILGGGVSAGYAAKEFANQGVQPGELAVISKEAVAPYERPALSKGYLFPEGA 60

Query: 60  ARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVI 119
           ARLPGFH CVGSGGE+LLPE YK+KGIELILSTEIV+AD+++K+L+SATG +FKYQ L+I
Sbjct: 61  ARLPGFHCCVGSGGEKLLPESYKQKGIELILSTEIVKADLSAKSLVSATGDVFKYQTLII 120

Query: 120 ATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSA 179
           ATGSTVLRLTDFGV+GAD+KNI YLREIDDADKLVEAIKAKK GKAVVVGGGYIGLELSA
Sbjct: 121 ATGSTVLRLTDFGVKGADSKNILYLREIDDADKLVEAIKAKKGGKAVVVGGGYIGLELSA 180

Query: 180 ALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVK 239
            L+INN+DV+MV+PEPWCMPRLFTADIAAFYE YY NKG+KIIKGTVA GFT   +GEVK
Sbjct: 181 VLRINNLDVTMVFPEPWCMPRLFTADIAAFYETYYTNKGVKIIKGTVASGFTAQPNGEVK 240

Query: 240 EVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVAT 299
           EV+LKDGRTLEADIV+VGVG +PL SLFKGQV E+KGGI+TD FFKTS  DVYAVGDVAT
Sbjct: 241 EVQLKDGRTLEADIVIVGVGAKPLTSLFKGQVEEDKGGIKTDAFFKTSVPDVYAVGDVAT 300

Query: 300 FPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYG 359
           FP+K+Y ++RRVEHVDH+RKSAEQAVK I A EGG  V  YDYLP+FYSR+FDLSWQFYG
Sbjct: 301 FPLKMYGDVRRVEHVDHSRKSAEQAVKAIKAAEGGAAVEEYDYLPFFYSRSFDLSWQFYG 360

Query: 360 DNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESL 419
           DNVGD+VLFGD++ ++   +FG YW++ GKVVG F+E G+ +ENKA+AKVA+ +PS ESL
Sbjct: 361 DNVGDSVLFGDSNPSNPKPRFGAYWVQGGKVVGAFMEGGSGDENKALAKVAKARPSAESL 420

Query: 420 DVLKNEGLSFASKI 433
           D L  +G+SFA+KI
Sbjct: 421 DELVKQGISFAAKI 434

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|Q93WJ8|MDAR4_ARATH Probable monodehydroascorbate reductase, cytoplasmic isoform 4 OS=Arabidopsis thaliana GN=At5g03630 PE=1 SV=1

 Score =  656 bits (1693), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/432 (76%), Positives = 372/432 (86%), Gaps = 1/432 (0%)

Query: 3   EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTAR 61
           EKSFKYVI+GGGV+AGYAAREF  QGVKPGELAIIS+E V PYERPALSK Y+  E  A 
Sbjct: 4   EKSFKYVIVGGGVAAGYAAREFFNQGVKPGELAIISREQVPPYERPALSKGYIHLENKAT 63

Query: 62  LPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIAT 121
           LP F+V  G GGER  P+WYKEKGIELIL TEIV+AD+A+KTL+S TG +FKYQ L+ AT
Sbjct: 64  LPNFYVAAGIGGERQFPQWYKEKGIELILGTEIVKADLAAKTLVSGTGQVFKYQTLLAAT 123

Query: 122 GSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAAL 181
           GS+V+RL+DFGV GADAKNIFYLRE++DAD L  A++ K+ GKAVVVGGGYIGLEL AAL
Sbjct: 124 GSSVIRLSDFGVPGADAKNIFYLRELEDADYLAYAMETKEKGKAVVVGGGYIGLELGAAL 183

Query: 182 KINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEV 241
           K NN+DV+MVYPEPWCMPRLFTA IA+FYEGYYANKGI I+KGTVA GFTTN++GEV EV
Sbjct: 184 KANNLDVTMVYPEPWCMPRLFTAGIASFYEGYYANKGINIVKGTVASGFTTNSNGEVTEV 243

Query: 242 KLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFP 301
           KLKDGRTLEADIV+VGVGGRP+ISLFK QV E KGG++TD FFKTS  DVYA+GDVATFP
Sbjct: 244 KLKDGRTLEADIVIVGVGGRPIISLFKDQVEEEKGGLKTDGFFKTSLPDVYAIGDVATFP 303

Query: 302 MKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDN 361
           MKLY EMRRVEHVDHARKSAEQAVK I A E G ++  YDYLPYFYSRAFDLSWQFYGDN
Sbjct: 304 MKLYNEMRRVEHVDHARKSAEQAVKAIKAAEEGNSIPEYDYLPYFYSRAFDLSWQFYGDN 363

Query: 362 VGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLDV 421
           VG++VLFGDND  S   KFG+YWIK+ KVVG FLE G+PEEN AIAK+AR QPSVESL+V
Sbjct: 364 VGESVLFGDNDPESPKPKFGSYWIKERKVVGAFLEGGSPEENNAIAKLARAQPSVESLEV 423

Query: 422 LKNEGLSFASKI 433
           L  EGLSFA+ I
Sbjct: 424 LSKEGLSFATNI 435

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|Q9SR59|MDAR1_ARATH Probable monodehydroascorbate reductase, cytoplasmic isoform 1 OS=Arabidopsis thaliana GN=At3g09940 PE=2 SV=1

 Score =  578 bits (1490), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 298/433 (68%), Positives = 356/433 (82%), Gaps = 2/433 (0%)

Query: 3   EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTAR 61
           EKS+KYVI+GGGV+ GYAAREF+ QG+KPGELAIISKE V P+ERP L+K Y+  E    
Sbjct: 4   EKSYKYVIIGGGVAGGYAAREFSNQGLKPGELAIISKEPVPPFERPELTKVYIDLEVNPT 63

Query: 62  LPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIAT 121
           L   +VC G+G  +  P WYKEKGI+LI+ TEIV+AD+ASKTL+S  G I+KYQ L+IAT
Sbjct: 64  LANIYVCAGTGEAKQYPNWYKEKGIDLIVGTEIVKADLASKTLVSDDGKIYKYQTLLIAT 123

Query: 122 GSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAK-KNGKAVVVGGGYIGLELSAA 180
           GST +RL++ GV+ AD KNIFYLREI+D+D+L  A++   + GKAV++GGG++GLE+S+A
Sbjct: 124 GSTNIRLSEIGVQEADVKNIFYLREIEDSDELALAMELYVQRGKAVIIGGGFLGLEISSA 183

Query: 181 LKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE 240
           L+ NN +V+MV+PEPW + R FTA+IA+FYE YYANKGIKIIKGTVA GF+TN+DGEV E
Sbjct: 184 LRANNHEVTMVFPEPWLVHRFFTAEIASFYESYYANKGIKIIKGTVATGFSTNSDGEVTE 243

Query: 241 VKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATF 300
           VKL+DGRTLEA+IVV GVG RP  SLFKGQ+ E KGGI+TD FFKTS  DVYA+GDVATF
Sbjct: 244 VKLEDGRTLEANIVVAGVGARPATSLFKGQLEEEKGGIKTDGFFKTSVPDVYALGDVATF 303

Query: 301 PMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGD 360
           PMK+Y   RRVEH D+ARKSA QAVK I A E GKT+  YDYLPYFYSR F LSW+FYG+
Sbjct: 304 PMKMYGGTRRVEHADNARKSAAQAVKAIKAGEEGKTIPDYDYLPYFYSRFFKLSWEFYGE 363

Query: 361 NVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLD 420
           NVG++VLFGDND  S   KFGTYW+KDGKVVGVFLE GT EE+KAIAKVAR QPSVESLD
Sbjct: 364 NVGESVLFGDNDPKSPKPKFGTYWVKDGKVVGVFLEGGTQEEHKAIAKVARAQPSVESLD 423

Query: 421 VLKNEGLSFASKI 433
           VL  EGLSFA+K 
Sbjct: 424 VLSEEGLSFATKF 436

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|Q9LK94|MDAR2_ARATH Probable monodehydroascorbate reductase, cytoplasmic isoform 2 OS=Arabidopsis thaliana GN=At3g27820 PE=2 SV=1

 Score =  452 bits (1164), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 238/433 (54%), Positives = 308/433 (71%), Gaps = 10/433 (2%)

Query: 4   KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARL 62
           ++F YVILGGGV+AGYAA EF ++GV  GEL IIS+E VAPYERPALSK +L PE  ARL
Sbjct: 3   RAFVYVILGGGVAAGYAALEFTRRGVSDGELCIISEEPVAPYERPALSKGFLLPEAPARL 62

Query: 63  PGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATG 122
           P FH CVG+  E+L P+WYK+ GIEL+L T +   D+  KTLLS+TG    Y+ L+IATG
Sbjct: 63  PSFHTCVGANDEKLTPKWYKDHGIELVLGTRVKSVDVRRKTLLSSTGETISYKFLIIATG 122

Query: 123 STVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALK 182
           +  L+L +FGVEG+DA+N+ YLR++ DA++L   I++  NG AVV+GGGYIG+E +A+L 
Sbjct: 123 ARALKLEEFGVEGSDAENVCYLRDLADANRLATVIQSSSNGNAVVIGGGYIGMECAASLV 182

Query: 183 INNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVK 242
           IN I+V+MV+PE  CM RLFT  IA+ YE YY  KG+K IKGTV   F  +++ +V  V 
Sbjct: 183 INKINVTMVFPEAHCMARLFTPKIASLYEDYYRAKGVKFIKGTVLTSFEFDSNKKVTAVN 242

Query: 243 LKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPM 302
           LKDG  L AD+VVVG+G RP  SLF+GQ+   KGGI+ +   ++S   VYA+GDVATFP+
Sbjct: 243 LKDGSHLPADLVVVGIGIRPNTSLFEGQLTIEKGGIKVNSRMQSSDSSVYAIGDVATFPV 302

Query: 303 KLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTG-YDYLPYFYSRAFDLSWQFYGDN 361
           KL+ EMRR+EHVD ARKSA  AV  IM        TG +DYLP+FYSR F  SWQFYGD 
Sbjct: 303 KLFGEMRRLEHVDSARKSARHAVSAIM----DPIKTGDFDYLPFFYSRVFAFSWQFYGDP 358

Query: 362 VGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVE-SLD 420
            GD V FG+ +   +   FG YW+K G +VG FLE GT EE + I+K  +++P+V   L+
Sbjct: 359 TGDVVHFGEYEDGKS---FGAYWVKKGHLVGSFLEGGTKEEYETISKATQLKPAVTIDLE 415

Query: 421 VLKNEGLSFASKI 433
            L+ EGL FA  +
Sbjct: 416 ELEREGLGFAHTV 428

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|P92947|MDARP_ARATH Monodehydroascorbate reductase, chloroplastic OS=Arabidopsis thaliana GN=At1g63940 PE=2 SV=3

 Score =  366 bits (939), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 204/429 (47%), Positives = 273/429 (63%), Gaps = 26/429 (6%)

Query: 1   MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEV-APYERPALSKAYLFP--E 57
            A ++ ++VI+GGG +AGYAAR F + G+  G L I++KE  APYERPAL+KAYLFP  +
Sbjct: 56  FANENREFVIVGGGNAAGYAARTFVENGMADGRLCIVTKEAYAPYERPALTKAYLFPPEK 115

Query: 58  GTARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQIL 117
             ARLPGFH CVG GGER  P+WYKEKGIE+I    +  AD   +TL +  G   KY  L
Sbjct: 116 KPARLPGFHTCVGGGGERQTPDWYKEKGIEVIYEDPVAGADFEKQTLTTDAGKQLKYGSL 175

Query: 118 VIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLEL 177
           +IATG T  R  D    G     + Y+RE+ DAD L+ ++   K  K V+VGGGYIG+E+
Sbjct: 176 IIATGCTASRFPD--KIGGHLPGVHYIREVADADSLIASLGKAK--KIVIVGGGYIGMEV 231

Query: 178 SAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGE 237
           +AA    N+D ++V+PE   + RLFT  +A  YE  Y   G+K +KG         +DG 
Sbjct: 232 AAAAVAWNLDTTIVFPEDQLLQRLFTPSLAQKYEELYRQNGVKFVKGASINNLEAGSDGR 291

Query: 238 VKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENK--GGIETDDFFKTSADDVYAVG 295
           V  VKL DG T+EAD VV+G+G +P I  F+  +A NK  GGI+ D  F+TS   ++A+G
Sbjct: 292 VSAVKLADGSTIEADTVVIGIGAKPAIGPFE-TLAMNKSIGGIQVDGLFRTSTPGIFAIG 350

Query: 296 DVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLS- 354
           DVA FP+K+Y  M RVEHVDHAR+SA+  VK+++          YDYLPYFYSR F+   
Sbjct: 351 DVAAFPLKIYDRMTRVEHVDHARRSAQHCVKSLLTAH----TDTYDYLPYFYSRVFEYEG 406

Query: 355 ------WQFYGDNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAK 408
                 WQF+GDNVG+TV  G+ D      K  T+WI+ G++ GV +ESG+PEE + + K
Sbjct: 407 SPRKVWWQFFGDNVGETVEVGNFD-----PKIATFWIESGRLKGVLVESGSPEEFQLLPK 461

Query: 409 VARVQPSVE 417
           +AR QP V+
Sbjct: 462 LARSQPLVD 470

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|P83966|MDARF_CUCSA Monodehydroascorbate reductase, fruit isozyme (Fragments) OS=Cucumis sativus PE=1 SV=1

 Score =  204 bits (518), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 115/190 (60%), Positives = 128/190 (67%), Gaps = 48/190 (25%)

Query: 233 NADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVY 292
           +AD  V+ +KLKDGRTL+ADIVVVGVGGRPL+SLFK                 TS  DVY
Sbjct: 23  DADQLVEAIKLKDGRTLDADIVVVGVGGRPLVSLFK-----------------TSIPDVY 65

Query: 293 AVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFD 352
           AVGDVAT+P+KLY E+RRVEHVDHAR S E+                YDYLPYFYSR F+
Sbjct: 66  AVGDVATYPLKLYNELRRVEHVDHARLSIEE----------------YDYLPYFYSRTFN 109

Query: 353 LSWQFYGDNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARV 412
           L+WQFYGDNVG+TVLF DN        FGTYWI   KVVGVFLE GTP+E     KVARV
Sbjct: 110 LAWQFYGDNVGETVLFPDN--------FGTYWI---KVVGVFLEGGTPDE----YKVARV 154

Query: 413 QPSVESLDVL 422
           QP VESLD L
Sbjct: 155 QPPVESLDQL 164

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Cucumis sativus (taxid: 3659)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|D5IGG6|FDR_SPHSX Ferredoxin--NAD(P)(+) reductase fdr OS=Sphingomonas sp. GN=fdr PE=1 SV=1

 Score =  130 bits (328), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 115/405 (28%), Positives = 175/405 (43%), Gaps = 33/405 (8%)

Query: 1   MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEV-APYERPALSKAYLFPEGT 59
           M +  +  VI+G G      A    + G   G +AII  E   PYERP LSK YL  E  
Sbjct: 1   MTDTHYDVVIVGAGHGGAQTAIALRQNGFA-GTIAIIGAEPDLPYERPPLSKEYLAAE-- 57

Query: 60  ARLPGFHVCVGSGGERLL---PEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQI 116
                       G ER+L     ++ ++ I + L   + R D   + +  A G    Y  
Sbjct: 58  -----------KGFERILIRPASFWNDRHIAMHLGCAVERVDPTQRLVFLADGRSMGYGD 106

Query: 117 LVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLE 176
           LV   G +  RL      G D   + Y+R   D D L   +      K V++GGGYIGLE
Sbjct: 107 LVWCAGGSARRLD---CTGHDLGGVHYVRTRADTDALAAELPGVS--KVVIIGGGYIGLE 161

Query: 177 LSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG 236
            +A +     +V+++      + R+    ++ F+E  + ++G+ + +    VG     DG
Sbjct: 162 AAAVMAKFGKNVTLIEALDRVLARVAGEPLSRFFEEKHRSRGVDV-RLRTKVGCLLGQDG 220

Query: 237 EVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGD 296
            V  V+L D   + AD+V+VG+G  P IS      A+   G+  D   +TS   VYA+GD
Sbjct: 221 RVTHVELNDADPIPADLVIVGIGIIPAISPLVVAGAKASNGLLVDASGRTSIPHVYALGD 280

Query: 297 VATFPMKLYRE--MRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLS 354
            A             R+E V +A   A    +TI       T   Y  +P+F+S  +D+ 
Sbjct: 281 CAAHVNSFAPNDIPIRLESVQNANDQAVVVARTICG-----TAAQYHAVPWFWSSQYDIR 335

Query: 355 WQFYGDNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGT 399
            Q  G   G    F   D   AT  F   + +DG+V+ +   + T
Sbjct: 336 LQTVGLTAGYDQTFVRGD--PATGSFTVVYGRDGRVIALDCVNAT 378

Part of the multicomponent carbazole 1,9a-dioxygenase (CARDO), that converts carbazole (CAR) into 2-aminobiphenyl-2,3-diol.

Sphingomonas sp (taxid: 28214)

EC: 1

EC: .

EC: 1

EC: 8

EC: .

EC: 1

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	433
224069008	434	predicted protein [Populus trichocarpa]	1.0	0.997	0.854	0.0
146432261	434	monodehydroascorbate reductase [Vitis vi	1.0	0.997	0.857	0.0
225440936	434	PREDICTED: monodehydroascorbate reductas	1.0	0.997	0.854	0.0
15865451	477	monodehydroascorbate reductase [Mesembry	1.0	0.907	0.831	0.0
198400317	434	monodehydroascorbate reductase [Camellia	1.0	0.997	0.829	0.0
50400860	433	RecName: Full=Monodehydroascorbate reduc	0.997	0.997	0.831	0.0
356533631	433	PREDICTED: monodehydroascorbate reductas	0.993	0.993	0.837	0.0
132449587	434	monodehydroascorbate reductase [Ipomoea	1.0	0.997	0.822	0.0
356577825	433	PREDICTED: monodehydroascorbate reductas	0.993	0.993	0.835	0.0
225380882	434	monodehydroascorbate reductase [Malus x	1.0	0.997	0.817	0.0

>gi|224069008|ref|XP_002326252.1| predicted protein [Populus trichocarpa] gi|118481009|gb|ABK92458.1| unknown [Populus trichocarpa] gi|222833445|gb|EEE71922.1| predicted protein [Populus trichocarpa]

 Score =  757 bits (1954), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/434 (85%), Positives = 400/434 (92%), Gaps = 1/434 (0%)

Query: 1   MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGT 59
           MAEKSFKYVI+GGGVSAGYAAREF KQGVKPGELAIISKE VAPYERPALSKAYLFPEGT
Sbjct: 1   MAEKSFKYVIIGGGVSAGYAAREFCKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGT 60

Query: 60  ARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVI 119
           ARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIV+AD+A+KTL+SA G IFKY IL+I
Sbjct: 61  ARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVKADLAAKTLVSAAGEIFKYHILII 120

Query: 120 ATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSA 179
           ATGSTV++LTDFGV+GADAKNI YLREIDDADKLVEAIK KKNGKAV+VGGGYIGLELSA
Sbjct: 121 ATGSTVIKLTDFGVQGADAKNILYLREIDDADKLVEAIKGKKNGKAVIVGGGYIGLELSA 180

Query: 180 ALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVK 239
           AL+INNIDV+MVYPEPWCMPRLFTA IAAFYEGYYANKG+KI+KGTVAVGF  +++GEVK
Sbjct: 181 ALRINNIDVTMVYPEPWCMPRLFTAGIAAFYEGYYANKGVKIVKGTVAVGFNADSNGEVK 240

Query: 240 EVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVAT 299
           EVKLKDGR LEADIVVVGVGGRPL +LFKGQV E KGGI+TD FFKTS  DVYAVGDVAT
Sbjct: 241 EVKLKDGRVLEADIVVVGVGGRPLTTLFKGQVEEEKGGIKTDAFFKTSISDVYAVGDVAT 300

Query: 300 FPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYG 359
           FP+KLY ++RRVEHVDHARKSAEQAVK I + E GKT+  YDYLP+FYSR+FDLSWQFYG
Sbjct: 301 FPLKLYNDIRRVEHVDHARKSAEQAVKAIKSNEEGKTIDVYDYLPFFYSRSFDLSWQFYG 360

Query: 360 DNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESL 419
           DNVGD VLFGDND AS   KFG+YWIKDGKVVGVFLE GTP+ENKAIAKVARVQP VE+L
Sbjct: 361 DNVGDAVLFGDNDPASPKPKFGSYWIKDGKVVGVFLEGGTPDENKAIAKVARVQPPVENL 420

Query: 420 DVLKNEGLSFASKI 433
           DVL  EGLSFA KI
Sbjct: 421 DVLTKEGLSFACKI 434

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|146432261|gb|ABQ41114.1| monodehydroascorbate reductase [Vitis vinifera]

 Score =  756 bits (1952), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/434 (85%), Positives = 398/434 (91%), Gaps = 1/434 (0%)

Query: 1   MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGT 59
           MAEK FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE VAPYERPALSKAYLFPEG 
Sbjct: 1   MAEKHFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGA 60

Query: 60  ARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVI 119
           ARLPGFHVCVGSGGERLLPEWYKEKGIELIL TEIV+AD+ASKTL+SA G  FKY IL+I
Sbjct: 61  ARLPGFHVCVGSGGERLLPEWYKEKGIELILGTEIVKADLASKTLISAAGETFKYHILII 120

Query: 120 ATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSA 179
           ATGSTV+RLTDF VEGADAKNI YLREIDDADKL++ IKAKKNGKAV+VGGGYIGLELSA
Sbjct: 121 ATGSTVIRLTDFRVEGADAKNILYLREIDDADKLIDVIKAKKNGKAVIVGGGYIGLELSA 180

Query: 180 ALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVK 239
            +KINN+DV MVYPEPWCMPRLFTA IAAFYEGYYANKGIKIIKGTVAVGFT++A+GEVK
Sbjct: 181 VMKINNLDVCMVYPEPWCMPRLFTAGIAAFYEGYYANKGIKIIKGTVAVGFTSDANGEVK 240

Query: 240 EVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVAT 299
           EVKLKDGR LEADIVVVGVGGRPL +LFKGQV E KGGI+TD+FFKTS  DVYAVGDVAT
Sbjct: 241 EVKLKDGRVLEADIVVVGVGGRPLTTLFKGQVEEEKGGIKTDEFFKTSVPDVYAVGDVAT 300

Query: 300 FPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYG 359
           FP+KLY E+RRVEHVDHARKSAEQAVK I A+E GK+V  YDYLPYFYSRAFDLSWQFYG
Sbjct: 301 FPLKLYNEIRRVEHVDHARKSAEQAVKAIKASEEGKSVEEYDYLPYFYSRAFDLSWQFYG 360

Query: 360 DNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESL 419
           DNVG+TVLFGDN+ AS   KFGTYWIKDGKVVG FLE GTPEEN AIAKVAR+QP+VE+L
Sbjct: 361 DNVGETVLFGDNNPASPKAKFGTYWIKDGKVVGAFLEGGTPEENTAIAKVARLQPAVENL 420

Query: 420 DVLKNEGLSFASKI 433
           D L NEGL+FA KI
Sbjct: 421 DQLTNEGLTFACKI 434

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440936|ref|XP_002283000.1| PREDICTED: monodehydroascorbate reductase [Vitis vinifera] gi|297740090|emb|CBI30272.3| unnamed protein product [Vitis vinifera]

 Score =  754 bits (1947), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/434 (85%), Positives = 398/434 (91%), Gaps = 1/434 (0%)

Query: 1   MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGT 59
           MAEK FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE VAPYERPALSKAYLFPEG 
Sbjct: 1   MAEKHFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGA 60

Query: 60  ARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVI 119
           ARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIV+AD+ASKTL+SA G  FKY IL+I
Sbjct: 61  ARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVKADLASKTLISAAGETFKYHILII 120

Query: 120 ATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSA 179
           ATGSTV+RLTDF VEGADAKNI YLREI+DADKL++ IKAKKNGKAV+VGGGYIGLELSA
Sbjct: 121 ATGSTVIRLTDFRVEGADAKNILYLREINDADKLIDVIKAKKNGKAVIVGGGYIGLELSA 180

Query: 180 ALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVK 239
            +KINN+DV MVYPEPWCMPRLFTA IAAFYEGYYANKGIKIIKGTVAVGFT++A+GEVK
Sbjct: 181 VMKINNLDVCMVYPEPWCMPRLFTAGIAAFYEGYYANKGIKIIKGTVAVGFTSDANGEVK 240

Query: 240 EVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVAT 299
           EVKLKDGR LEADIVVVGVGGRPL +LFKGQV E KGGI+TD+FFKTS  DVYAVGDVAT
Sbjct: 241 EVKLKDGRVLEADIVVVGVGGRPLTTLFKGQVEEEKGGIKTDEFFKTSVPDVYAVGDVAT 300

Query: 300 FPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYG 359
           FP+KLY E+RRVEHVDHARKSAEQAVK I A+E GK+V  YDYLPYFYSRAFDLSWQFYG
Sbjct: 301 FPLKLYNEIRRVEHVDHARKSAEQAVKAIKASEEGKSVEEYDYLPYFYSRAFDLSWQFYG 360

Query: 360 DNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESL 419
           DNVG+TVLFGDN+ AS   KFGTYWIKDGKVVG FLE GTPEEN AIAKVAR+QP+VE+L
Sbjct: 361 DNVGETVLFGDNNPASPKAKFGTYWIKDGKVVGAFLEGGTPEENTAIAKVARLQPAVENL 420

Query: 420 DVLKNEGLSFASKI 433
           D L  EGL+FA KI
Sbjct: 421 DQLTKEGLTFACKI 434

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15865451|emb|CAC82727.1| monodehydroascorbate reductase [Mesembryanthemum crystallinum]

 Score =  744 bits (1922), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/434 (83%), Positives = 397/434 (91%), Gaps = 1/434 (0%)

Query: 1   MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGT 59
           MAEK FKY+ LGGGVS GYAAREFAKQGV+PGELAIISKE VAPYERPALSKAYLFPEGT
Sbjct: 44  MAEKHFKYIALGGGVSGGYAAREFAKQGVQPGELAIISKEAVAPYERPALSKAYLFPEGT 103

Query: 60  ARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVI 119
           ARLPGFHVCVGSGGERL+P+WYKEKGIELILSTEIV+AD++SK+L SA+G IFKY  LVI
Sbjct: 104 ARLPGFHVCVGSGGERLVPDWYKEKGIELILSTEIVKADLSSKSLTSASGEIFKYDNLVI 163

Query: 120 ATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSA 179
           ATGSTV++L+DFGV+GADAKNIFYLREIDDADKLVEAIK KKNGK V+VGGGYIGLELSA
Sbjct: 164 ATGSTVIKLSDFGVQGADAKNIFYLREIDDADKLVEAIKTKKNGKVVLVGGGYIGLELSA 223

Query: 180 ALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVK 239
           A+++N++DV+MVYPEPWCMPRLFTADIA FYEGYY NKG+KIIKGTVA GF+++ +GEVK
Sbjct: 224 AMRVNDLDVTMVYPEPWCMPRLFTADIAKFYEGYYTNKGVKIIKGTVAAGFSSHDNGEVK 283

Query: 240 EVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVAT 299
           EV+LKDGR L ADIVVVGVGGRPL +LFKGQVAE KGGI+TD FFKTS  DVYAVGDVAT
Sbjct: 284 EVQLKDGRVLAADIVVVGVGGRPLTALFKGQVAEEKGGIKTDGFFKTSVPDVYAVGDVAT 343

Query: 300 FPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYG 359
           FP+KLY E+RRVEHVDHARKSAEQAVK I A+E GK V  YDYLPYFYSRAFDLSWQFYG
Sbjct: 344 FPLKLYGELRRVEHVDHARKSAEQAVKAIKASEEGKAVEEYDYLPYFYSRAFDLSWQFYG 403

Query: 360 DNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESL 419
           DNVGD VLFGDND AS+ HKFG+YWIKDGKVVG FLESGTPEENKAIAKVARVQP  +SL
Sbjct: 404 DNVGDAVLFGDNDPASSPHKFGSYWIKDGKVVGAFLESGTPEENKAIAKVARVQPPADSL 463

Query: 420 DVLKNEGLSFASKI 433
           + L  EGL+FASKI
Sbjct: 464 EQLSKEGLTFASKI 477

Source: Mesembryanthemum crystallinum

Species: Mesembryanthemum crystallinum

Genus: Mesembryanthemum

Family: Aizoaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|198400317|gb|ACH87167.1| monodehydroascorbate reductase [Camellia sinensis]

 Score =  739 bits (1909), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/434 (82%), Positives = 392/434 (90%), Gaps = 1/434 (0%)

Query: 1   MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGT 59
           MAEK+FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE VAPYERPALSKAYLFPE  
Sbjct: 1   MAEKTFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEGVAPYERPALSKAYLFPESP 60

Query: 60  ARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVI 119
           ARLPGFHVCVGSGGERLLPEWY +KGI LIL+TEIV+AD+A+KTL+SA G  F Y  L+I
Sbjct: 61  ARLPGFHVCVGSGGERLLPEWYAQKGIALILNTEIVKADLATKTLVSAAGETFNYHFLII 120

Query: 120 ATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSA 179
           ATGS+V+RLTDFGV+GADAKNI+YLREIDDADKLVEAI+ KKNGK V+VGGGYIGLELSA
Sbjct: 121 ATGSSVIRLTDFGVQGADAKNIYYLREIDDADKLVEAIQVKKNGKVVIVGGGYIGLELSA 180

Query: 180 ALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVK 239
            +K+NN+DV+MVYPEPWCMPRLFTA IAAFYEGYYANKGIKIIKGTVAVGFT +A+GEVK
Sbjct: 181 VMKLNNLDVNMVYPEPWCMPRLFTAGIAAFYEGYYANKGIKIIKGTVAVGFTADANGEVK 240

Query: 240 EVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVAT 299
           EVKLKDGR LEADIVVVGVGGRPL +LFKGQV E KGGIETD FFKTSA  VYAVGDVAT
Sbjct: 241 EVKLKDGRVLEADIVVVGVGGRPLTTLFKGQVEEEKGGIETDSFFKTSAPHVYAVGDVAT 300

Query: 300 FPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYG 359
           FPMK+Y EMRRVEHVDHARKSAE AVK I A+  GK++  YDYLP+FYSR+F+LSWQFYG
Sbjct: 301 FPMKIYNEMRRVEHVDHARKSAEHAVKAIFASTEGKSIEEYDYLPFFYSRSFNLSWQFYG 360

Query: 360 DNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESL 419
           DNVGDTVLFGDN   S   KFG+YWIKDGKVVG FLESGTPEENKAIAKVARVQP VESL
Sbjct: 361 DNVGDTVLFGDNSPTSENPKFGSYWIKDGKVVGAFLESGTPEENKAIAKVARVQPPVESL 420

Query: 420 DVLKNEGLSFASKI 433
           D+L  +GL+FA KI
Sbjct: 421 DLLAKDGLTFACKI 434

Source: Camellia sinensis

Species: Camellia sinensis

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|50400860|sp|Q43497.1|MDAR_SOLLC RecName: Full=Monodehydroascorbate reductase; Short=MDAR; AltName: Full=Ascorbate free radical reductase; Short=AFR reductase gi|832876|gb|AAC41654.1| ascorbate free radical reductase [Solanum lycopersicum] gi|1097368|prf||2113407A ascorbate free radical reductase

 Score =  736 bits (1900), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/434 (83%), Positives = 393/434 (90%), Gaps = 2/434 (0%)

Query: 1   MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGT 59
           MAEKSFKYVI+GGGVSAGYAAREFAKQGVKPGELAIISKE VAPYERPALSKAYLFPEG 
Sbjct: 1   MAEKSFKYVIVGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGA 60

Query: 60  ARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVI 119
           ARLPGFHVCVGSGGER LPEWY EKGI LILSTEIV+AD+ASKTL+SA G  FKYQ LVI
Sbjct: 61  ARLPGFHVCVGSGGERQLPEWYAEKGISLILSTEIVKADLASKTLVSAAGESFKYQTLVI 120

Query: 120 ATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSA 179
           ATG+TVL+L+DFGV+GAD+KNIFYLREIDDAD+LVEA+KAKKNGKAVVVGGGYIGLELSA
Sbjct: 121 ATGTTVLKLSDFGVQGADSKNIFYLREIDDADQLVEALKAKKNGKAVVVGGGYIGLELSA 180

Query: 180 ALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVK 239
            L++NNI+V+MVYPEPWCMPRLFT  IAAFYEGYY NKG+ IIKGTVAVGF T+ +GEVK
Sbjct: 181 VLRLNNIEVNMVYPEPWCMPRLFTEGIAAFYEGYYKNKGVNIIKGTVAVGFDTHPNGEVK 240

Query: 240 EVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVAT 299
           EVKLKDGR LEADIVVVGVG RPL +LFKGQV E KGGI+TD FFKTS  DVYAVGDVAT
Sbjct: 241 EVKLKDGRVLEADIVVVGVGARPLTTLFKGQVEEEKGGIKTDAFFKTSVPDVYAVGDVAT 300

Query: 300 FPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYG 359
           FP+K+Y E+RRVEHVDH+RKSAEQAVK I A+E GK+V  YDYLPYFYSRAFDLSWQFYG
Sbjct: 301 FPLKMYNEIRRVEHVDHSRKSAEQAVKAIFASEQGKSVDEYDYLPYFYSRAFDLSWQFYG 360

Query: 360 DNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESL 419
           DNVG+TVLFGD D  SATHKFG YWIKDGK+VG FLESG+PEENKAIAKVA+VQP   +L
Sbjct: 361 DNVGETVLFGDADPNSATHKFGQYWIKDGKIVGAFLESGSPEENKAIAKVAKVQPPA-TL 419

Query: 420 DVLKNEGLSFASKI 433
           D L  EG+SFASKI
Sbjct: 420 DQLAQEGISFASKI 433

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356533631|ref|XP_003535365.1| PREDICTED: monodehydroascorbate reductase-like isoform 1 [Glycine max]

 Score =  734 bits (1894), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/431 (83%), Positives = 389/431 (90%), Gaps = 1/431 (0%)

Query: 4   KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARL 62
           K+FKY+ILGGGVSAGYAAREFAKQGVKPGELAIISKE VAPYERPALSKAYLFPE  ARL
Sbjct: 3   KTFKYIILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPESPARL 62

Query: 63  PGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATG 122
           PGFHVCVGSGGERLLPEWY EKGIELILSTEIV+ D+A+K+L+SA G  F YQIL++ATG
Sbjct: 63  PGFHVCVGSGGERLLPEWYTEKGIELILSTEIVKVDLAAKSLISAGGETFSYQILIVATG 122

Query: 123 STVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALK 182
           STV+RLTDFGVEGADAKNIFYLRE+DDADKL  AIKAKKNGKAVVVGGGYIGLELSA LK
Sbjct: 123 STVIRLTDFGVEGADAKNIFYLREVDDADKLYAAIKAKKNGKAVVVGGGYIGLELSAVLK 182

Query: 183 INNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVK 242
           +NNIDV+MVYPEPWCMPRLFTA IA FYEGYYANKG+ IIKGTVAVGFT+N+DGEVKEVK
Sbjct: 183 LNNIDVTMVYPEPWCMPRLFTAGIAEFYEGYYANKGVNIIKGTVAVGFTSNSDGEVKEVK 242

Query: 243 LKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPM 302
           LKDGR LEADIVVVGVGGRP   L KGQV E KGGI+TD FFKT+  DVYAVGDVATFP+
Sbjct: 243 LKDGRVLEADIVVVGVGGRPQTVLVKGQVEEEKGGIKTDAFFKTNLSDVYAVGDVATFPL 302

Query: 303 KLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV 362
           KLY E+RRVEHVDH+RKSAEQAVK I A E GKTV  YDYLPYFYSR+FDLSWQFYGDNV
Sbjct: 303 KLYGELRRVEHVDHSRKSAEQAVKAIKAAEEGKTVEEYDYLPYFYSRSFDLSWQFYGDNV 362

Query: 363 GDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLDVL 422
           GDTVLFGDN+ AS+  KFGTYWIKDGKVVGVFLE GTPEEN+AIAKVA+VQP V  ++ L
Sbjct: 363 GDTVLFGDNNPASSKPKFGTYWIKDGKVVGVFLEGGTPEENQAIAKVAKVQPPVADVNQL 422

Query: 423 KNEGLSFASKI 433
             EGLSFASKI
Sbjct: 423 AKEGLSFASKI 433

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|132449587|gb|ABO33631.1| monodehydroascorbate reductase [Ipomoea batatas]

 Score =  734 bits (1894), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/434 (82%), Positives = 391/434 (90%), Gaps = 1/434 (0%)

Query: 1   MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGT 59
           MA KSFKYVILGG V+AGYAAREF+KQGVKPGELA+ISKE VAPYERPALSK YLFPEG 
Sbjct: 1   MAGKSFKYVILGGDVAAGYAAREFSKQGVKPGELALISKEAVAPYERPALSKGYLFPEGA 60

Query: 60  ARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVI 119
           ARLPGFHVCVGSGGERLLPEWY EKGI LILSTEIV AD+ASKTL+SA G  FKY++L+I
Sbjct: 61  ARLPGFHVCVGSGGERLLPEWYTEKGISLILSTEIVEADVASKTLISAAGETFKYEVLII 120

Query: 120 ATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSA 179
           ATGSTVLRL+DFGV+GAD+KNIFYLREID+ADKLVEAIKAKKNGKAVVVGGGYIGLELSA
Sbjct: 121 ATGSTVLRLSDFGVQGADSKNIFYLREIDEADKLVEAIKAKKNGKAVVVGGGYIGLELSA 180

Query: 180 ALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVK 239
            L++NNIDV+MV+PEPWCMPRLFTA IAAFYEGYY NKG+KIIKGTVAVGF T+ +GEVK
Sbjct: 181 VLRMNNIDVTMVFPEPWCMPRLFTASIAAFYEGYYENKGVKIIKGTVAVGFDTHPNGEVK 240

Query: 240 EVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVAT 299
           EVKLKDGR+LEADIVVVGVG +PL +LFKGQV E KGGI+TD FFKTS   VYAVGDV T
Sbjct: 241 EVKLKDGRSLEADIVVVGVGAKPLTTLFKGQVEEEKGGIKTDAFFKTSVPGVYAVGDVVT 300

Query: 300 FPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYG 359
           FP+KLY E RRVEHV+HARKSAEQAVK I A+E G ++  YDYLPYFYSRAFDLSWQFYG
Sbjct: 301 FPLKLYNEQRRVEHVEHARKSAEQAVKAIFASEKGTSIDEYDYLPYFYSRAFDLSWQFYG 360

Query: 360 DNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESL 419
           DNVG+TVLFGDND  S THKFG YWI++GKVVG FLESGTPEENKAIAKVARVQP   SL
Sbjct: 361 DNVGETVLFGDNDPKSPTHKFGQYWIQNGKVVGAFLESGTPEENKAIAKVARVQPPALSL 420

Query: 420 DVLKNEGLSFASKI 433
           D + N+GL+FASKI
Sbjct: 421 DEMANQGLTFASKI 434

Source: Ipomoea batatas

Species: Ipomoea batatas

Genus: Ipomoea

Family: Convolvulaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356577825|ref|XP_003557022.1| PREDICTED: monodehydroascorbate reductase [Glycine max]

 Score =  733 bits (1891), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/431 (83%), Positives = 389/431 (90%), Gaps = 1/431 (0%)

Query: 4   KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARL 62
           K+FKY+ILGGGVSAGYAAREFAKQGVKPGELAIISKE VAPYERPALSKAYLFPE  ARL
Sbjct: 3   KTFKYIILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPESPARL 62

Query: 63  PGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATG 122
           PGFHVCVGSGGERLLPEWY EKGIELILSTEIV+ D+A+K+L+SA G  F YQIL++ATG
Sbjct: 63  PGFHVCVGSGGERLLPEWYTEKGIELILSTEIVKVDLAAKSLISAGGETFSYQILIVATG 122

Query: 123 STVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALK 182
           STV+RLTDFGVEGADAKNIFYLRE+DDADKL EAIKAKKNGKAVVVGGGYIGLELSA LK
Sbjct: 123 STVIRLTDFGVEGADAKNIFYLREVDDADKLYEAIKAKKNGKAVVVGGGYIGLELSAVLK 182

Query: 183 INNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVK 242
           +NNIDV+MVYPEPWCMPRLFTA IA FYE YY NKG+ IIKGTVAVGFT+N+DGEVKEVK
Sbjct: 183 LNNIDVTMVYPEPWCMPRLFTAGIAEFYEEYYKNKGVNIIKGTVAVGFTSNSDGEVKEVK 242

Query: 243 LKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPM 302
           LKDGR LEADIVVVGVGGRP  +L KGQV E KGGI+TD FFKT+  DVYAVGDVATFP+
Sbjct: 243 LKDGRVLEADIVVVGVGGRPQTALVKGQVEEEKGGIKTDAFFKTNLSDVYAVGDVATFPL 302

Query: 303 KLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV 362
           KLY E+RRVEHVDH+RKSAEQAVK I A E G+TV  YDYLPYFYSR+FDLSWQFYGDNV
Sbjct: 303 KLYGELRRVEHVDHSRKSAEQAVKAIKAAEEGRTVEEYDYLPYFYSRSFDLSWQFYGDNV 362

Query: 363 GDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLDVL 422
           GDTVLFGDN+ AS+  KFGTYWIKDGKVVGVFLE GTPEEN+AIAKVA+VQP V  +D L
Sbjct: 363 GDTVLFGDNNPASSKPKFGTYWIKDGKVVGVFLEGGTPEENQAIAKVAKVQPPVADVDQL 422

Query: 423 KNEGLSFASKI 433
             EGLSFASKI
Sbjct: 423 AKEGLSFASKI 433

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225380882|gb|ACN88682.1| monodehydroascorbate reductase [Malus x domestica]

 Score =  725 bits (1872), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/434 (81%), Positives = 390/434 (89%), Gaps = 1/434 (0%)

Query: 1   MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGT 59
           MA K+FKYVILGGGVSAGYAAREFAKQG+KPGELA+ISKE VAPYERPALSKAYL PE  
Sbjct: 1   MAAKNFKYVILGGGVSAGYAAREFAKQGLKPGELAVISKEAVAPYERPALSKAYLLPESP 60

Query: 60  ARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVI 119
           ARLPGFHVCVGSGGERLLP+WYKEKGIELILSTEIV+AD+  KTL+S TG  FKY+ LVI
Sbjct: 61  ARLPGFHVCVGSGGERLLPDWYKEKGIELILSTEIVKADLPGKTLVSGTGESFKYETLVI 120

Query: 120 ATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSA 179
           ATGSTV+RL+DFGV+GADAKNIFYLREIDDADKL EAIKAKKNGKAV+VGGGYIGLEL A
Sbjct: 121 ATGSTVIRLSDFGVKGADAKNIFYLREIDDADKLNEAIKAKKNGKAVIVGGGYIGLELGA 180

Query: 180 ALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVK 239
           AL+INN+DV MVYPEPWCMPRLFT+DIAAFYEGYY NKG++IIKGTVA GFT +++GEVK
Sbjct: 181 ALRINNLDVKMVYPEPWCMPRLFTSDIAAFYEGYYKNKGVQIIKGTVATGFTADSNGEVK 240

Query: 240 EVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVAT 299
           EV LKDG  LEADIVVVGVGGRPL +LFKGQV E KGGI+TD FFKTS  +VYAVGDVAT
Sbjct: 241 EVHLKDGTVLEADIVVVGVGGRPLTTLFKGQVEEEKGGIKTDAFFKTSVPNVYAVGDVAT 300

Query: 300 FPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYG 359
           FP+KLY E+RRVEHVDHARKSAEQ+VK I A+E GKTV  YDYLP+FYSR+FDLSWQFYG
Sbjct: 301 FPLKLYNEIRRVEHVDHARKSAEQSVKAIKASEEGKTVEEYDYLPFFYSRSFDLSWQFYG 360

Query: 360 DNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESL 419
           DNVG+TVLFGD++ A+   KFG+YWIKDGKVVG FLE GTPEENKAIAKVA+ QP V SL
Sbjct: 361 DNVGETVLFGDSNPATPKAKFGSYWIKDGKVVGAFLEGGTPEENKAIAKVAKAQPPVASL 420

Query: 420 DVLKNEGLSFASKI 433
           D L  EGLSFASKI
Sbjct: 421 DQLATEGLSFASKI 434

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	433
TAIR|locus:2085176	466	MDAR1 "monodehydroascorbate re	0.960	0.892	0.736	8.6e-173
TAIR|locus:2144588	435	ATMDAR2 [Arabidopsis thaliana	0.995	0.990	0.740	1.2e-170
TAIR|locus:2100143	441	MDHAR "monodehydroascorbate re	0.993	0.975	0.671	1.5e-152
TAIR|locus:2086430	488	MDAR4 "monodehydroascorbate re	0.979	0.868	0.530	3.4e-116
TAIR|locus:2195503	493	MDAR6 "monodehydroascorbate re	0.965	0.847	0.452	6.8e-95
UNIPROTKB|P95146	411	Rv1869c "Probable reductase" [	0.822	0.866	0.285	1.6e-31
TIGR_CMR|SPO_3737	403	SPO_3737 "pyridine nucleotide-	0.752	0.808	0.321	3e-30
WB|WBGene00017640	549	F20D6.11 [Caenorhabditis elega	0.755	0.595	0.284	6.6e-30
UNIPROTKB|Q19655	549	F20D6.11 "Protein F20D6.11" [C	0.755	0.595	0.284	6.6e-30
UNIPROTKB|P95034	406	Rv0688 "PUTATIVE FERREDOXIN RE	0.748	0.798	0.308	7.1e-29

TAIR|locus:2085176 MDAR1 "monodehydroascorbate reductase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1619 (575.0 bits), Expect = 8.6e-173, Sum P(2) = 8.6e-173
 Identities = 307/417 (73%), Positives = 357/417 (85%)

Query:    18 GYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERL 76
             GYAA+EFA QGV+PGELA+ISKE VAPYERPALSK YLFPEG ARLPGFH CVGSGGE+L
Sbjct:    50 GYAAKEFANQGVQPGELAVISKEAVAPYERPALSKGYLFPEGAARLPGFHCCVGSGGEKL 109

Query:    77 LPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGA 136
             LPE YK+KGIELILSTEIV+AD+++K+L+SATG +FKYQ L+IATGSTVLRLTDFGV+GA
Sbjct:   110 LPESYKQKGIELILSTEIVKADLSAKSLVSATGDVFKYQTLIIATGSTVLRLTDFGVKGA 169

Query:   137 DAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKINNIDVSMVYPEPW 196
             D+KNI YLREIDDADKLVE                YIGLELSA L+INN+DV+MV+PEPW
Sbjct:   170 DSKNILYLREIDDADKLVEAIKAKKGGKAVVVGGGYIGLELSAVLRINNLDVTMVFPEPW 229

Query:   197 CMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVV 256
             CMPRLFTADIAAFYE YY NKG+KIIKGTVA GFT   +GEVKEV+LKDGRTLEADIV+V
Sbjct:   230 CMPRLFTADIAAFYETYYTNKGVKIIKGTVASGFTAQPNGEVKEVQLKDGRTLEADIVIV 289

Query:   257 GVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDH 316
             GVG +PL SLFKGQV E+KGGI+TD FFKTS  DVYAVGDVATFP+K+Y ++RRVEHVDH
Sbjct:   290 GVGAKPLTSLFKGQVEEDKGGIKTDAFFKTSVPDVYAVGDVATFPLKMYGDVRRVEHVDH 349

Query:   317 ARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDTVLFGDNDLASA 376
             +RKSAEQAVK I A EGG  V  YDYLP+FYSR+FDLSWQFYGDNVGD+VLFGD++ ++ 
Sbjct:   350 SRKSAEQAVKAIKAAEGGAAVEEYDYLPFFYSRSFDLSWQFYGDNVGDSVLFGDSNPSNP 409

Query:   377 THKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLDVLKNEGLSFASKI 433
               +FG YW++ GKVVG F+E G+ +ENKA+AKVA+ +PS ESLD L  +G+SFA+KI
Sbjct:   410 KPRFGAYWVQGGKVVGAFMEGGSGDENKALAKVAKARPSAESLDELVKQGISFAAKI 466

GO:0005737 "cytoplasm" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005782 "peroxisomal matrix" evidence=IDA

GO:0016656 "monodehydroascorbate reductase (NADH) activity" evidence=IDA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA;TAS

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

TAIR|locus:2144588 ATMDAR2 [Arabidopsis thaliana (taxid:3702)]

 Score = 1659 (589.1 bits), Expect = 1.2e-170, P = 1.2e-170
 Identities = 320/432 (74%), Positives = 358/432 (82%)

Query:     3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTAR 61
             EKSFKYVI+GGGV+AGYAAREF  QGVKPGELAIIS+E V PYERPALSK Y+  E  A 
Sbjct:     4 EKSFKYVIVGGGVAAGYAAREFFNQGVKPGELAIISREQVPPYERPALSKGYIHLENKAT 63

Query:    62 LPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIAT 121
             LP F+V  G GGER  P+WYKEKGIELIL TEIV+AD+A+KTL+S TG +FKYQ L+ AT
Sbjct:    64 LPNFYVAAGIGGERQFPQWYKEKGIELILGTEIVKADLAAKTLVSGTGQVFKYQTLLAAT 123

Query:   122 GSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAAL 181
             GS+V+RL+DFGV GADAKNIFYLRE++DAD L                  YIGLEL AAL
Sbjct:   124 GSSVIRLSDFGVPGADAKNIFYLRELEDADYLAYAMETKEKGKAVVVGGGYIGLELGAAL 183

Query:   182 KINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEV 241
             K NN+DV+MVYPEPWCMPRLFTA IA+FYEGYYANKGI I+KGTVA GFTTN++GEV EV
Sbjct:   184 KANNLDVTMVYPEPWCMPRLFTAGIASFYEGYYANKGINIVKGTVASGFTTNSNGEVTEV 243

Query:   242 KLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFP 301
             KLKDGRTLEADIV+VGVGGRP+ISLFK QV E KGG++TD FFKTS  DVYA+GDVATFP
Sbjct:   244 KLKDGRTLEADIVIVGVGGRPIISLFKDQVEEEKGGLKTDGFFKTSLPDVYAIGDVATFP 303

Query:   302 MKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDN 361
             MKLY EMRRVEHVDHARKSAEQAVK I A E G ++  YDYLPYFYSRAFDLSWQFYGDN
Sbjct:   304 MKLYNEMRRVEHVDHARKSAEQAVKAIKAAEEGNSIPEYDYLPYFYSRAFDLSWQFYGDN 363

Query:   362 VGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLDV 421
             VG++VLFGDND  S   KFG+YWIK+ KVVG FLE G+PEEN AIAK+AR QPSVESL+V
Sbjct:   364 VGESVLFGDNDPESPKPKFGSYWIKERKVVGAFLEGGSPEENNAIAKLARAQPSVESLEV 423

Query:   422 LKNEGLSFASKI 433
             L  EGLSFA+ I
Sbjct:   424 LSKEGLSFATNI 435

GO:0005737 "cytoplasm" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0016656 "monodehydroascorbate reductase (NADH) activity" evidence=ISS

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0009651 "response to salt stress" evidence=IEP

GO:0010043 "response to zinc ion" evidence=IEP

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0006970 "response to osmotic stress" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

TAIR|locus:2100143 MDHAR "monodehydroascorbate reductase" [Arabidopsis thaliana (taxid:3702)]

 Score = 1488 (528.9 bits), Expect = 1.5e-152, P = 1.5e-152
 Identities = 290/432 (67%), Positives = 344/432 (79%)

Query:     3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTAR 61
             EKS+KYVI+GGGV+ GYAAREF+ QG+KPGELAIISKE V P+ERP L+K Y+  E    
Sbjct:     4 EKSYKYVIIGGGVAGGYAAREFSNQGLKPGELAIISKEPVPPFERPELTKVYIDLEVNPT 63

Query:    62 LPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIAT 121
             L   +VC G+G  +  P WYKEKGI+LI+ TEIV+AD+ASKTL+S  G I+KYQ L+IAT
Sbjct:    64 LANIYVCAGTGEAKQYPNWYKEKGIDLIVGTEIVKADLASKTLVSDDGKIYKYQTLLIAT 123

Query:   122 GSTVLRLTDFGVEGADAKNIFYLREIDDADKL-VEXXXXXXXXXXXXXXXXYIGLELSAA 180
             GST +RL++ GV+ AD KNIFYLREI+D+D+L +                 ++GLE+S+A
Sbjct:   124 GSTNIRLSEIGVQEADVKNIFYLREIEDSDELALAMELYVQRGKAVIIGGGFLGLEISSA 183

Query:   181 LKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE 240
             L+ NN +V+MV+PEPW + R FTA+IA+FYE YYANKGIKIIKGTVA GF+TN+DGEV E
Sbjct:   184 LRANNHEVTMVFPEPWLVHRFFTAEIASFYESYYANKGIKIIKGTVATGFSTNSDGEVTE 243

Query:   241 VKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATF 300
             VKL+DGRTLEA+IVV GVG RP  SLFKGQ+ E KGGI+TD FFKTS  DVYA+GDVATF
Sbjct:   244 VKLEDGRTLEANIVVAGVGARPATSLFKGQLEEEKGGIKTDGFFKTSVPDVYALGDVATF 303

Query:   301 PMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGD 360
             PMK+Y   RRVEH D+ARKSA QAVK I A E GKT+  YDYLPYFYSR F LSW+FYG+
Sbjct:   304 PMKMYGGTRRVEHADNARKSAAQAVKAIKAGEEGKTIPDYDYLPYFYSRFFKLSWEFYGE 363

Query:   361 NVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLD 420
             NVG++VLFGDND  S   KFGTYW+KDGKVVGVFLE GT EE+KAIAKVAR QPSVESLD
Sbjct:   364 NVGESVLFGDNDPKSPKPKFGTYWVKDGKVVGVFLEGGTQEEHKAIAKVARAQPSVESLD 423

Query:   421 VLKNEGLSFASK 432
             VL  EGLSFA+K
Sbjct:   424 VLSEEGLSFATK 435

GO:0005737 "cytoplasm" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0016656 "monodehydroascorbate reductase (NADH) activity" evidence=ISS

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0009651 "response to salt stress" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP;RCA

GO:0009610 "response to symbiotic fungus" evidence=IEP

GO:0043903 "regulation of symbiosis, encompassing mutualism through parasitism" evidence=IMP

GO:0007165 "signal transduction" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

TAIR|locus:2086430 MDAR4 "monodehydroascorbate reductase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1145 (408.1 bits), Expect = 3.4e-116, P = 3.4e-116
 Identities = 229/432 (53%), Positives = 297/432 (68%)

Query:     4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARL 62
             ++F YVILGGGV+AGYAA EF ++GV  GEL IIS+E VAPYERPALSK +L PE  ARL
Sbjct:     3 RAFVYVILGGGVAAGYAALEFTRRGVSDGELCIISEEPVAPYERPALSKGFLLPEAPARL 62

Query:    63 PGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATG 122
             P FH CVG+  E+L P+WYK+ GIEL+L T +   D+  KTLLS+TG    Y+ L+IATG
Sbjct:    63 PSFHTCVGANDEKLTPKWYKDHGIELVLGTRVKSVDVRRKTLLSSTGETISYKFLIIATG 122

Query:   123 STVLRLTDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALK 182
             +  L+L +FGVEG+DA+N+ YLR++ DA++L                  YIG+E +A+L 
Sbjct:   123 ARALKLEEFGVEGSDAENVCYLRDLADANRLATVIQSSSNGNAVVIGGGYIGMECAASLV 182

Query:   183 INNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVK 242
             IN I+V+MV+PE  CM RLFT  IA+ YE YY  KG+K IKGTV   F  +++ +V  V 
Sbjct:   183 INKINVTMVFPEAHCMARLFTPKIASLYEDYYRAKGVKFIKGTVLTSFEFDSNKKVTAVN 242

Query:   243 LKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPM 302
             LKDG  L AD+VVVG+G RP  SLF+GQ+   KGGI+ +   ++S   VYA+GDVATFP+
Sbjct:   243 LKDGSHLPADLVVVGIGIRPNTSLFEGQLTIEKGGIKVNSRMQSSDSSVYAIGDVATFPV 302

Query:   303 KLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV 362
             KL+ EMRR+EHVD ARKSA  AV  IM  +  KT   +DYLP+FYSR F  SWQFYGD  
Sbjct:   303 KLFGEMRRLEHVDSARKSARHAVSAIM--DPIKT-GDFDYLPFFYSRVFAFSWQFYGDPT 359

Query:   363 GDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVE-SLDV 421
             GD V FG+ +   +   FG YW+K G +VG FLE GT EE + I+K  +++P+V   L+ 
Sbjct:   360 GDVVHFGEYEDGKS---FGAYWVKKGHLVGSFLEGGTKEEYETISKATQLKPAVTIDLEE 416

Query:   422 LKNEGLSFASKI 433
             L+ EGL FA  +
Sbjct:   417 LEREGLGFAHTV 428

GO:0005737 "cytoplasm" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005778 "peroxisomal membrane" evidence=IDA

GO:0016656 "monodehydroascorbate reductase (NADH) activity" evidence=IMP;IDA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA;IMP;TAS

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

TAIR|locus:2195503 MDAR6 "monodehydroascorbate reductase 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 944 (337.4 bits), Expect = 6.8e-95, P = 6.8e-95
 Identities = 201/444 (45%), Positives = 270/444 (60%)

Query:     2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEV-APYERPALSKAYLFP--EG 58
             A ++ ++VI+GGG +AGYAAR F + G+  G L I++KE  APYERPAL+KAYLFP  + 
Sbjct:    57 ANENREFVIVGGGNAAGYAARTFVENGMADGRLCIVTKEAYAPYERPALTKAYLFPPEKK 116

Query:    59 TARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILV 118
              ARLPGFH CVG GGER  P+WYKEKGIE+I    +  AD   +TL +  G   KY  L+
Sbjct:   117 PARLPGFHTCVGGGGERQTPDWYKEKGIEVIYEDPVAGADFEKQTLTTDAGKQLKYGSLI 176

Query:   119 IATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELS 178
             IATG T  R  D    G     + Y+RE+ DAD L+                 YIG+E++
Sbjct:   177 IATGCTASRFPD--KIGGHLPGVHYIREVADADSLI--ASLGKAKKIVIVGGGYIGMEVA 232

Query:   179 AALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEV 238
             AA    N+D ++V+PE   + RLFT  +A  YE  Y   G+K +KG         +DG V
Sbjct:   233 AAAVAWNLDTTIVFPEDQLLQRLFTPSLAQKYEELYRQNGVKFVKGASINNLEAGSDGRV 292

Query:   239 KEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENK--GGIETDDFFKTSADDVYAVGD 296
               VKL DG T+EAD VV+G+G +P I  F+  +A NK  GGI+ D  F+TS   ++A+GD
Sbjct:   293 SAVKLADGSTIEADTVVIGIGAKPAIGPFE-TLAMNKSIGGIQVDGLFRTSTPGIFAIGD 351

Query:   297 VATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLS-- 354
             VA FP+K+Y  M RVEHVDHAR+SA+  VK+++      T T YDYLPYFYSR F+    
Sbjct:   352 VAAFPLKIYDRMTRVEHVDHARRSAQHCVKSLLTAH---TDT-YDYLPYFYSRVFEYEGS 407

Query:   355 -----WQFYGDNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKV 409
                  WQF+GDNVG+TV  G+ D      K  T+WI+ G++ GV +ESG+PEE + + K+
Sbjct:   408 PRKVWWQFFGDNVGETVEVGNFD-----PKIATFWIESGRLKGVLVESGSPEEFQLLPKL 462

Query:   410 ARVQPSVESLDVLKNEGLSFASKI 433
             AR QP V+   +     +  A +I
Sbjct:   463 ARSQPLVDKAKLASASSVEEALEI 486

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0010319 "stromule" evidence=IDA

GO:0005524 "ATP binding" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

UNIPROTKB|P95146 Rv1869c "Probable reductase" [Mycobacterium tuberculosis H37Rv (taxid:83332)]

 Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 111/389 (28%), Positives = 182/389 (46%)

Query:     5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIIS-KEVAPYERPALSKAYLFPEGTARLP 63
             S  +VI+GGG+ AG  A E  ++    G + +   +E  PY+RP LSK +L   G   L 
Sbjct:     4 STTFVIVGGGL-AGAKAVEALRRSDFGGRIILFGDEEHLPYDRPPLSKEFL--AGKKSLS 60

Query:    64 GFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGS 123
              F +           +WY++  +++ L   +   D ++ T+    G   +Y  L++ATGS
Sbjct:    61 DFTIQTS--------DWYRDHDVDVRLGVRVSSLDRSAHTVELPDGAAVRYDKLLLATGS 112

Query:   124 TVLRLTDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKI 183
                R     + G+DA  + YLR  +DA  L                  +IGLE++A+ + 
Sbjct:   113 APRRPP---IPGSDAAGVHYLRSYNDAVAL--NSVLVQGSSLAVVGAGWIGLEVAASARQ 167

Query:   184 NNIDVSMVYPEPWCMPRLFTAD--IAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEV 241
               +DV++V  E    P L      +   +   + ++G+ +   T     T  ADG+   +
Sbjct:   168 RGVDVTVV--ETAIQPLLAALGEAVGKVFADLHRDQGVDLRLQTQLEEITA-ADGKATGL 224

Query:   242 KLKDGRTLEADIVVVGVGGRPLISLFK-GQVAENKGGIETDDFFKTSADDVYAVGDVATF 300
             K++DG T+ AD V+V VG +P + L +   +A  +GG+  D   +TS  D+YAVGD+A  
Sbjct:   225 KMRDGSTVAADAVLVAVGAKPNVELAQQAGLAMGEGGVLVDASLRTSDPDIYAVGDIAAA 284

Query:   301 PMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGD 360
                L     R EH  +A K    A   ++   G      Y  LPY ++  +DL  ++ G 
Sbjct:   285 EHPLLGTRVRTEHWANALKQPAVAAAGMLGRPGE-----YAELPYLFTDQYDLGMEYVGH 339

Query:   361 NVG-DTVLFGDNDLASATHKFGTYWIKDG 388
                 D V+F  N    A  +F ++W+ DG
Sbjct:   340 APSCDRVVFRGN---VAGREFLSFWL-DG 364

GO:0005576 "extracellular region" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

TIGR_CMR|SPO_3737 SPO_3737 "pyridine nucleotide-disulphide oxidoreductase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 119/370 (32%), Positives = 170/370 (45%)

Query:     9 VILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHV 67
             V++G G +         K G + GE+ +I  E V PY+RP LSKAYL  E          
Sbjct:     5 VVIGAGQAGASLVARLRKDGFE-GEITLIGAEPVPPYQRPPLSKAYLLGEMEK------- 56

Query:    68 CVGSGGERLL--PE-WYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST 124
                   ERL   PE +Y E+ I L L+  +   D A+KT+ S  G +  Y  L + TGS 
Sbjct:    57 ------ERLFLRPESFYAEQNIALRLNARVSAIDPAAKTV-SLGGEVIPYDQLALTTGSE 109

Query:   125 VLRLTDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKIN 184
               RL      G D   +  +R++ D D +                  YIGLE +A     
Sbjct:   110 PRRLP--AAIGGDLAGVHVVRDLADIDAMAPSVTEGARALIVGGG--YIGLEAAAVCAKR 165

Query:   185 NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTT--NADGEVKEVK 242
              + V++V      + R+   + +A++   +   G+ I +G   VG T    A G V    
Sbjct:   166 GVQVTLVEMADRILQRVAAPETSAYFRALHTGHGVDIREG---VGLTRLIGAQGRVTGAV 222

Query:   243 LKDGRTLEADIVVVGVGGRPLISLFK--GQVAENKGGIETDDFFKTSADDVYAVGDVATF 300
             L DG  L  D+VVVGVG  P  +L +  G V EN  GI TD   +TS   ++A GD A+F
Sbjct:   223 LTDGSELPVDLVVVGVGIAPATALAEAAGLVLEN--GIRTDAQGRTSDPSIWAAGDCASF 280

Query:   301 PMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYL--PYFYSRAFDLSWQFY 358
             P K  R   R+E V +A   AE   + +   +G     G DY+  P+F+S  +D+  Q  
Sbjct:   281 PYKGGRI--RLESVPNAIDQAETVAQNM---QGA----GKDYVAQPWFWSDQYDVKLQIA 331

Query:   359 GDNVG-DTVL 367
             G N G D V+
Sbjct:   332 GLNTGYDRVV 341

GO:0008152 "metabolic process" evidence=ISS

GO:0015036 "disulfide oxidoreductase activity" evidence=ISS

WB|WBGene00017640 F20D6.11 [Caenorhabditis elegans (taxid:6239)]

 Score = 335 (123.0 bits), Expect = 6.6e-30, P = 6.6e-30
 Identities = 100/351 (28%), Positives = 176/351 (50%)

Query:    80 WYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAK 139
             +Y+E+ ++ +L T ++  +  S+ +  + G    Y  L+IATG  V +L    V G+D K
Sbjct:   206 FYEERNVKFLLKTSVIAVNHKSREVSLSNGETVVYSKLIIATGGNVRKLQ---VPGSDLK 262

Query:   140 NIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKINNIDVSMVYPEPWCMP 199
             NI YLR++++A+ +                  +IG+E+++AL      V+++   P  +P
Sbjct:   263 NICYLRKVEEANII---SNLHPGKHVVCVGSSFIGMEVASALAEKAASVTVISNTPEPLP 319

Query:   200 RLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVG 259
              +F +DI       +  KG+K       V    N  GEV +V L++G+ L+ D++V G+G
Sbjct:   320 -VFGSDIGKGIRLKFEEKGVKFELAANVVALRGNDQGEVSKVILENGKELDVDLLVCGIG 378

Query:   260 GRPLISLFKGQ--VAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYR-EMRRVEHVDH 316
               P     +G     +N+G IE D+ F+T+   ++A+GDV T P+ L+  +   ++H   
Sbjct:   379 VTPATKFLEGSGIKLDNRGFIEVDEKFRTNISYIFAMGDVVTAPLPLWDIDSINIQHFQT 438

Query:   317 ARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAF-DLSWQFYGDNVGDTVLFGDNDLAS 375
             A+   +    TI+    GK   G   +PYF++  F     +F G N G T  + + D  +
Sbjct:   439 AQAHGQHLGYTIV----GKPQPG-PIVPYFWTLFFFAFGLKFSGCNQGSTKEYTNGDPET 493

Query:   376 ATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARV-QPSVE-SLDVLKN 424
              T  F  Y++K  KVV V   +G P  +   ++ A + +  +E +L  LKN
Sbjct:   494 GT--FIRYFLKKDKVVAV--AAGGP--SSVASQFAEIFKKGIEVTLKDLKN 538

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

UNIPROTKB|Q19655 F20D6.11 "Protein F20D6.11" [Caenorhabditis elegans (taxid:6239)]

 Score = 335 (123.0 bits), Expect = 6.6e-30, P = 6.6e-30
 Identities = 100/351 (28%), Positives = 176/351 (50%)

Query:    80 WYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAK 139
             +Y+E+ ++ +L T ++  +  S+ +  + G    Y  L+IATG  V +L    V G+D K
Sbjct:   206 FYEERNVKFLLKTSVIAVNHKSREVSLSNGETVVYSKLIIATGGNVRKLQ---VPGSDLK 262

Query:   140 NIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKINNIDVSMVYPEPWCMP 199
             NI YLR++++A+ +                  +IG+E+++AL      V+++   P  +P
Sbjct:   263 NICYLRKVEEANII---SNLHPGKHVVCVGSSFIGMEVASALAEKAASVTVISNTPEPLP 319

Query:   200 RLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVG 259
              +F +DI       +  KG+K       V    N  GEV +V L++G+ L+ D++V G+G
Sbjct:   320 -VFGSDIGKGIRLKFEEKGVKFELAANVVALRGNDQGEVSKVILENGKELDVDLLVCGIG 378

Query:   260 GRPLISLFKGQ--VAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYR-EMRRVEHVDH 316
               P     +G     +N+G IE D+ F+T+   ++A+GDV T P+ L+  +   ++H   
Sbjct:   379 VTPATKFLEGSGIKLDNRGFIEVDEKFRTNISYIFAMGDVVTAPLPLWDIDSINIQHFQT 438

Query:   317 ARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAF-DLSWQFYGDNVGDTVLFGDNDLAS 375
             A+   +    TI+    GK   G   +PYF++  F     +F G N G T  + + D  +
Sbjct:   439 AQAHGQHLGYTIV----GKPQPG-PIVPYFWTLFFFAFGLKFSGCNQGSTKEYTNGDPET 493

Query:   376 ATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARV-QPSVE-SLDVLKN 424
              T  F  Y++K  KVV V   +G P  +   ++ A + +  +E +L  LKN
Sbjct:   494 GT--FIRYFLKKDKVVAV--AAGGP--SSVASQFAEIFKKGIEVTLKDLKN 538

GO:0005739 "mitochondrion" evidence=ISS

GO:0051882 "mitochondrial depolarization" evidence=ISS

GO:0008656 "cysteine-type endopeptidase activator activity involved in apoptotic process" evidence=ISS

GO:0008635 "activation of cysteine-type endopeptidase activity involved in apoptotic process by cytochrome c" evidence=ISS

GO:0006917 "induction of apoptosis" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0005743 "mitochondrial inner membrane" evidence=ISS

UNIPROTKB|P95034 Rv0688 "PUTATIVE FERREDOXIN REDUCTASE" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 106/344 (30%), Positives = 158/344 (45%)

Query:    79 EWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADA 138
             E+Y EK I L L +  V  D   +T+  A G +  Y  LVIATG    R+        D 
Sbjct:    77 EFYDEKDIALRLGSAAVSLDTGEQTVTLADGTVLGYDELVIATGLVPRRIPSL----PDL 132

Query:   139 KNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKINNIDVSMVYPEPWCM 198
               I  LR  D++  L +                +IG E++A+L+   +DV +V P+P  +
Sbjct:   133 DGIRVLRSFDESMALRKHASAARHAVVVGAG--FIGCEVAASLRGLGVDVVLVEPQPAPL 190

Query:   199 PRLFTADIAAFYEGYYANKGIKIIKG-TVAVGFTTNADGEVKEVKLKDGRTLEADIVVVG 257
               +    I       + ++G+ +  G TVA        G V  V L DG  L AD+VVVG
Sbjct:   191 ASVLGEQIGQLVTRLHRDEGVDVRTGVTVA---EVRGKGHVDAVVLTDGTELPADLVVVG 247

Query:   258 VGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHA 317
             +G  P     +G   E   G+  D   +TSA +V+A+GDVA++   +  + R VEH  + 
Sbjct:   248 IGSTPATEWLEGSGVEVDNGVICDKAGRTSAPNVWALGDVASWRDPMGHQAR-VEHWSNV 306

Query:   318 RKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGD-NVGDTVLFGDNDLASA 376
                A+QA   + A  G    TG   +PYF+S  +D+  Q  G+ +  D V   ++D    
Sbjct:   307 ---ADQARVVVPAMLGTDVPTGV-VVPYFWSDQYDVKIQCLGEPHATDVVHLVEDD---- 358

Query:   377 THKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLD 420
               KF  Y+ +DG +VGV       +  K   K+A   P  E LD
Sbjct:   359 GRKFLAYYERDGVLVGVVGGGMAGKVMKVRGKIAAGAPIAEVLD 402

GO:0005515 "protein binding" evidence=IPI

GO:0006124 "ferredoxin metabolic process" evidence=IDA

GO:0008860 "ferredoxin-NAD+ reductase activity" evidence=IDA

GO:0009055 "electron carrier activity" evidence=IDA

GO:0045454 "cell redox homeostasis" evidence=IDA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IDA

GO:0051287 "NAD binding" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LFA3	MDAR3_ARATH	1, ., 6, ., 5, ., 4	0.7788	1.0	0.9976	yes	no
Q42711	MDARS_CUCSA	1, ., 6, ., 5, ., 4	0.8202	1.0	0.9976	N/A	no
Q93WJ8	MDAR4_ARATH	1, ., 6, ., 5, ., 4	0.7662	0.9953	0.9908	no	no
Q40977	MDAR_PEA	1, ., 6, ., 5, ., 4	0.8093	0.9907	0.9907	N/A	no
Q43497	MDAR_SOLLC	1, ., 6, ., 5, ., 4	0.8317	0.9976	0.9976	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	1.6.5.4	0.994
3rd Layer	1.6.5	0.998

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	433
pfam07992	283	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp	1e-54
COG1251	793	COG1251, NirB, NAD(P)H-nitrite reductase [Energy p	1e-41
COG0446	415	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent	1e-35
PRK09754	396	PRK09754, PRK09754, phenylpropionate dioxygenase f	1e-34
TIGR02374	785	TIGR02374, nitri_red_nirB, nitrite reductase [NAD(	1e-31
TIGR03385	427	TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase	5e-27
PRK09564	444	PRK09564, PRK09564, coenzyme A disulfide reductase	3e-25
COG1252	405	COG1252, Ndh, NADH dehydrogenase, FAD-containing s	3e-21
COG1249	454	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenas	4e-21
PRK05976	472	PRK05976, PRK05976, dihydrolipoamide dehydrogenase	7e-19
PRK14989	847	PRK14989, PRK14989, nitrite reductase subunit NirD	2e-16
TIGR01350	460	TIGR01350, lipoamide_DH, dihydrolipoamide dehydrog	2e-16
PRK06416	462	PRK06416, PRK06416, dihydrolipoamide dehydrogenase	4e-16
PRK06292	460	PRK06292, PRK06292, dihydrolipoamide dehydrogenase	4e-15
pfam00070	82	pfam00070, Pyr_redox, Pyridine nucleotide-disulphi	1e-14
PRK06116	450	PRK06116, PRK06116, glutathione reductase; Validat	6e-14
PRK13512	438	PRK13512, PRK13512, coenzyme A disulfide reductase	4e-13
PRK07846	451	PRK07846, PRK07846, mycothione reductase; Reviewed	2e-12
PRK04965	377	PRK04965, PRK04965, NADH:flavorubredoxin oxidoredu	3e-12
TIGR03452	452	TIGR03452, mycothione_red, mycothione reductase	1e-11
PRK07818	466	PRK07818, PRK07818, dihydrolipoamide dehydrogenase	3e-11
TIGR02053	463	TIGR02053, MerA, mercuric reductase	6e-11
PTZ00318	424	PTZ00318, PTZ00318, NADH dehydrogenase-like protei	1e-10
PRK06370	463	PRK06370, PRK06370, mercuric reductase; Validated	2e-10
PRK06115	466	PRK06115, PRK06115, dihydrolipoamide dehydrogenase	9e-10
TIGR01424	446	TIGR01424, gluta_reduc_2, glutathione-disulfide re	2e-09
COG0492	305	COG0492, TrxB, Thioredoxin reductase [Posttranslat	6e-09
TIGR01423	486	TIGR01423, trypano_reduc, trypanothione-disulfide	2e-08
TIGR01292	299	TIGR01292, TRX_reduct, thioredoxin-disulfide reduc	4e-08
PRK06327	475	PRK06327, PRK06327, dihydrolipoamide dehydrogenase	9e-08
TIGR03169	364	TIGR03169, Nterm_to_SelD, pyridine nucleotide-disu	2e-07
PLN02507	499	PLN02507, PLN02507, glutathione reductase	2e-07
TIGR01438	484	TIGR01438, TGR, thioredoxin and glutathione reduct	1e-06
PRK11749	457	PRK11749, PRK11749, dihydropyrimidine dehydrogenas	2e-06
TIGR01421	450	TIGR01421, gluta_reduc_1, glutathione-disulfide re	3e-06
PRK06912	458	PRK06912, acoL, dihydrolipoamide dehydrogenase; Va	4e-06
PRK12810	471	PRK12810, gltD, glutamate synthase subunit beta; R	8e-06
PRK07251	438	PRK07251, PRK07251, pyridine nucleotide-disulfide	9e-06
PRK05249	461	PRK05249, PRK05249, soluble pyridine nucleotide tr	9e-06
TIGR01317	485	TIGR01317, GOGAT_sm_gam, glutamate synthases, NADH	1e-05
PRK07845	466	PRK07845, PRK07845, flavoprotein disulfide reducta	1e-05
PRK08010	441	PRK08010, PRK08010, pyridine nucleotide-disulfide	1e-05
PRK13984	604	PRK13984, PRK13984, putative oxidoreductase; Provi	4e-05
COG0493	457	COG0493, GltD, NADPH-dependent glutamate synthase	8e-05
PRK06467	471	PRK06467, PRK06467, dihydrolipoamide dehydrogenase	2e-04
PRK14694	468	PRK14694, PRK14694, putative mercuric reductase; P	3e-04
PRK12770	352	PRK12770, PRK12770, putative glutamate synthase su	4e-04
PTZ00058	561	PTZ00058, PTZ00058, glutathione reductase; Provisi	5e-04
PLN02546	558	PLN02546, PLN02546, glutathione reductase	0.001
PRK12778	752	PRK12778, PRK12778, putative bifunctional 2-polypr	0.001
TIGR01316	449	TIGR01316, gltA, glutamate synthase (NADPH), homot	0.001
TIGR03143	555	TIGR03143, AhpF_homolog, putative alkyl hydroperox	0.001
PTZ00153	659	PTZ00153, PTZ00153, lipoamide dehydrogenase; Provi	0.001
PRK09853	1019	PRK09853, PRK09853, putative selenate reductase su	0.003
PTZ00052	499	PTZ00052, PTZ00052, thioredoxin reductase; Provisi	0.003

>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase

 Score =  182 bits (465), Expect = 1e-54
 Identities = 101/302 (33%), Positives = 144/302 (47%), Gaps = 25/302 (8%)

Query: 7   KYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGF 65
             VI+GGG  AG AA     +     ++A+I +E    Y R  L K  L           
Sbjct: 1   DVVIIGGG-PAGLAAAIRLAR--LGLKVALIEREGGTCYNRGCLPKKLLLEVAEGLELA- 56

Query: 66  HVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSA---TGLIFKYQILVIATG 122
                  G  L  E YKE G+E++L TE+V  D   KT++     TG    Y  L+IATG
Sbjct: 57  ------IGLALPEEVYKEFGVEVLLGTEVVDIDRGEKTVVLKDVETGREITYDKLIIATG 110

Query: 123 STVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALK 182
           +        G+ G     +  LR + D+D+++E ++  K  + VVVGGGYIGLEL+AAL 
Sbjct: 111 ARPRIP---GIPGV---EVATLRGVIDSDEILELLELPK--RVVVVGGGYIGLELAAALA 162

Query: 183 INNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVK 242
               +V++V      + R      AA  E       + +    V V      DG+V EVK
Sbjct: 163 KLGKEVTVVERRDRLLARADDEISAALLE-KLEKLLLGVTVLLVVVVVVKVGDGKVVEVK 221

Query: 243 LKDGRTLEADIVVVGVGGRPLISLFK--GQVAENKGGIETDDFFKTSADDVYAVGDVATF 300
           L DG  L+AD+V+V +G RP   L +  G   + +G I  D++ +TS   +YA GDVA  
Sbjct: 222 LGDGEELDADVVLVAIGRRPNTELLEQAGVELDERGYIVVDEYLRTSVPGIYAAGDVAEG 281

Query: 301 PM 302
             
Sbjct: 282 KP 283

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283

>gnl|CDD|224171 COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion]

 Score =  156 bits (397), Expect = 1e-41
 Identities = 108/397 (27%), Positives = 170/397 (42%), Gaps = 58/397 (14%)

Query: 4   KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARL 62
           K  K VI+G G++      E  +      ++ +  +E    Y R  LS   L  E TA  
Sbjct: 2   KKQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSS-VLAGEKTA-- 58

Query: 63  PGFHVCVGSGGERLL---PEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVI 119
                      E +     +WY+E GI L    ++++ D A+K + +  G    Y  L+I
Sbjct: 59  -----------EDISLNRNDWYEENGITLYTGEKVIQIDRANKVVTTDAGRTVSYDKLII 107

Query: 120 ATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSA 179
           ATGS    L    + G+D   +F  R IDD + +++  + KK  KAVV+GGG +GLE + 
Sbjct: 108 ATGSYPFILP---IPGSDLPGVFVYRTIDDVEAMLDCARNKK--KAVVIGGGLLGLEAAR 162

Query: 180 ALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKII--KGTVAVGFTTNADGE 237
            LK   ++V++V+  P  M R               + GIK++  K T  +      + +
Sbjct: 163 GLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIV----GEDK 218

Query: 238 VKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDV 297
           V+ V+  DG  + AD+VV+ VG RP   L K        GI  +D+ +TS  D+YAVG+ 
Sbjct: 219 VEGVRFADGTEIPADLVVMAVGIRPNDELAKEAGLAVNRGIVVNDYMQTSDPDIYAVGEC 278

Query: 298 ATFPMKLY------REMRRV--EHVDHARKSAEQAVKT----------------IMATEG 333
           A    K+Y       E  +V  +H+      A +   T                   TEG
Sbjct: 279 AEHRGKVYGLVAPLYEQAKVLADHLCGGEAEAYEGSVTSTKLKVSGVDVFSAGDFQETEG 338

Query: 334 GKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDTVLFGD 370
            +++   D     Y +          D +   VL+GD
Sbjct: 339 AESIVFRDEQRGIYKKLV-----LKDDKIVGAVLYGD 370

Length = 793

>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

 Score =  135 bits (342), Expect = 1e-35
 Identities = 94/391 (24%), Positives = 146/391 (37%), Gaps = 29/391 (7%)

Query: 8   YVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHV 67
            VI+GGG +   AA    +  +      I  +    Y R  LS        +        
Sbjct: 1   IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDL---- 56

Query: 68  CVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLR 127
                  R  P + +  GI++   TE+   D  +K +L   G I  Y  LV+ATG+    
Sbjct: 57  -------RYPPRFNRATGIDVRTGTEVTSIDPENKVVLLDDGEIE-YDYLVLATGARPRP 108

Query: 128 LTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNID 187
                   +D + +  LR  +DA+ L    +  K    VVVG G IGLE + A       
Sbjct: 109 P-----PISDWEGVVTLRLREDAEALKGGAEPPK--DVVVVGAGPIGLEAAEAAAKRGKK 161

Query: 188 VSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD-GEVKEVKLKDG 246
           V+++        +L   ++A          G++++ GT  VG     +   V+ V   DG
Sbjct: 162 VTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDG 221

Query: 247 RTLEADIVVVGVGGRPLISLFK---GQVAENKGGIETDDFFKTSAD-DVYAVGDVATFPM 302
             ++AD+V++G G RP + L       +A   G +  D+   TS D DVYA GDVA  P 
Sbjct: 222 EEIKADLVIIGPGERPNVVLANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIPA 281

Query: 303 KLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV 362
               +  R+     A  +       I A      +     L    S   DL     G   
Sbjct: 282 AETGKGGRIALWAIAVAAG-----RIAAENIAGALRIPGLLGTVISDVGDLCAASTGLTE 336

Query: 363 GDTVLFGDNDLASATHKFGTYWIKDGKVVGV 393
           G         + S       +     ++VG+
Sbjct: 337 GKERGIDVVLVVSGGKDPRAHLYPGAELVGI 367

Length = 415

>gnl|CDD|170080 PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

 Score =  132 bits (334), Expect = 1e-34
 Identities = 101/375 (26%), Positives = 163/375 (43%), Gaps = 49/375 (13%)

Query: 1   MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEV-APYERPALSKAYLFPEGT 59
           M EK+   +I+GGG +A  AA    +QG   GEL + S E   PYERP LSK+ L  +  
Sbjct: 1   MKEKTI--IIVGGGQAAAMAAASLRQQGFT-GELHLFSDERHLPYERPPLSKSMLLEDSP 57

Query: 60  ARLPGFHVCVGSGGERLLPE-WYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILV 118
                         +++LP  W++E  + L     I      ++ L+   G  + +  L 
Sbjct: 58  QL------------QQVLPANWWQENNVHLHSGVTIKTLGRDTRELVLTNGESWHWDQLF 105

Query: 119 IATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELS 178
           IATG+         +  A  +  F LR   DA +L E ++ ++    V+VG G IGLEL+
Sbjct: 106 IATGAAARP---LPLLDALGERCFTLRHAGDAARLREVLQPER--SVVIVGAGTIGLELA 160

Query: 179 AALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEV 238
           A+       V+++      M R     +  +    +   G++I+            DGE 
Sbjct: 161 ASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIE---HVVDGEK 217

Query: 239 KEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVA-----ENKGGIETDDFFKTSADDVYA 293
            E+ L+ G TL+AD+V+ G+G          Q+A     +   GI  D+  +T    ++A
Sbjct: 218 VELTLQSGETLQADVVIYGIGIS-----ANDQLAREANLDTANGIVIDEACRTCDPAIFA 272

Query: 294 VGDVATFPMKLYRE----MRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSR 349
            GDVA     + R     + R E  ++A   A+ A   ++              P+F+S 
Sbjct: 273 GGDVA-----ITRLDNGALHRCESWENANNQAQIAAAAMLGLPLPLLPP-----PWFWSD 322

Query: 350 AFDLSWQFYGDNVGD 364
            +  + QF GD  GD
Sbjct: 323 QYSDNLQFIGDMRGD 337

Length = 396

>gnl|CDD|162827 TIGR02374, nitri_red_nirB, nitrite reductase [NAD(P)H], large subunit

 Score =  127 bits (321), Expect = 1e-31
 Identities = 82/317 (25%), Positives = 135/317 (42%), Gaps = 38/317 (11%)

Query: 79  EWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADA 138
           +WY++ GI L     +++ D   K +++  G    Y  L++ATGS    L    + GAD 
Sbjct: 62  DWYEKHGITLYTGETVIQIDTDQKQVITDAGRTLSYDKLILATGSYPFILP---IPGADK 118

Query: 139 KNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM 198
           K ++  R I+D D ++    A++  KA V+GGG +GLE +  L+   +DVS+++  P  M
Sbjct: 119 KGVYVFRTIEDLDAIMAM--AQRFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLM 176

Query: 199 PRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGV 258
            +          +     KG+  +     V        +   ++ KDG +LEAD++V+  
Sbjct: 177 AKQLDQTAGRLLQRELEQKGLTFLLEKDTV--EIVGATKADRIRFKDGSSLEADLIVMAA 234

Query: 259 GGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLY------REMRRVE 312
           G RP   L      +   GI  +D  +TS  D+YAVG+ A    ++Y       E  +V 
Sbjct: 235 GIRPNDELAVSAGIKVNRGIIVNDSMQTSDPDIYAVGECAEHNGRVYGLVAPLYEQAKVL 294

Query: 313 HVDH----ARKSAEQAVKT---------------IMATEGGKTVTGYDYLPYFYSRAFDL 353
             DH      +  E +  +                  TE   ++  YD     Y +    
Sbjct: 295 -ADHICGVECEEYEGSDLSAKLKLLGVDVWSAGDAQETERTTSIKIYDEQKGIYKKLV-- 351

Query: 354 SWQFYGDNVGDTVLFGD 370
                 D +   VLFGD
Sbjct: 352 ---LSDDKLLGAVLFGD 365

[Central intermediary metabolism, Nitrogen metabolism]. Length = 785

>gnl|CDD|163244 TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase

 Score =  111 bits (280), Expect = 5e-27
 Identities = 54/230 (23%), Positives = 114/230 (49%), Gaps = 18/230 (7%)

Query: 79  EWYKEKGIELILSTEIVRADIASKTLL---SATGLIFK--YQILVIATGSTVLRLTDFGV 133
            + K++GI++  + E++  +   +T++   + T   ++  Y  L+++ G++ +      +
Sbjct: 52  VFIKKRGIDVKTNHEVIEVNDERQTVVVRNNKTNETYEESYDYLILSPGASPIVP---NI 108

Query: 134 EGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYP 193
           EG +   +F LR ++D D + + I   K    V++GGGYIG+E++ AL+    +V++++ 
Sbjct: 109 EGINLDIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALRERGKNVTLIHR 168

Query: 194 EPWCMPRLFTADIAAFYEGYYANKGIKII--KGTVAVGFTTNADGEVKEVKLKDGRTLEA 251
               + +LF  ++    E       I +   +   ++      +GE +      G   +A
Sbjct: 169 SERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSI------EGEERVKVFTSGGVYQA 222

Query: 252 DIVVVGVGGRPLISLFK-GQVAEN-KGGIETDDFFKTSADDVYAVGDVAT 299
           D+V++  G +P   L K   +     G I  ++ F+TS  ++YA GDVA 
Sbjct: 223 DMVILATGIKPNSELAKDSGLKLGETGAIWVNEKFQTSVPNIYAAGDVAE 272

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol [Cellular processes, Detoxification]. Length = 427

>gnl|CDD|181958 PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed

 Score =  107 bits (268), Expect = 3e-25
 Identities = 63/229 (27%), Positives = 110/229 (48%), Gaps = 13/229 (5%)

Query: 78  PEWYKEKGIELILSTEIVRADIASKTLL---SATGLIF--KYQILVIATGSTVLRLTDFG 132
           PE + + GI++    E+V+ D  +KT+      TG IF   Y  L+IATG+   R     
Sbjct: 63  PEEFIKSGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGA---RPIIPP 119

Query: 133 VEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVY 192
           ++  + +N++ L+ ++D   L E +K ++    V++G G+IGLE   A K    +V ++ 
Sbjct: 120 IKNINLENVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQ 179

Query: 193 PEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEAD 252
            E   +P  F  +I    E      G+++             + +V+ V   D    EAD
Sbjct: 180 LEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLI--GEDKVEGVV-TDKGEYEAD 236

Query: 253 IVVVGVGGRPLISLFKGQVAE--NKGGIETDDFFKTSADDVYAVGDVAT 299
           +V+V  G +P     +    +    G I  D++ +TS +++YA GD AT
Sbjct: 237 VVIVATGVKPNTEFLEDTGLKTLKNGAIIVDEYGETSIENIYAAGDCAT 285

Length = 444

>gnl|CDD|224172 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

 Score = 94.6 bits (236), Expect = 3e-21
 Identities = 86/368 (23%), Positives = 143/368 (38%), Gaps = 61/368 (16%)

Query: 9   VILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSK--AYLFPEGTARLPGFH 66
           VILGGG     AA+  A++     E+ ++ +       P L +       E    +P   
Sbjct: 7   VILGGGFGGLSAAKRLARKLPDV-EITLVDRRDYHLFTPLLYEVATGTLSESEIAIP--- 62

Query: 67  VCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVL 126
                     L    ++ G    +  E+   D  +K +  A      Y  LV+A GS   
Sbjct: 63  ----------LRALLRKSGNVQFVQGEVTDIDRDAKKVTLADLGEISYDYLVVALGSET- 111

Query: 127 RLTDFGVEGADAKNIFYLREIDDADKL-------VEAIKAKKNGKA----VVVGGGYIGL 175
               FG+ GA A+  F L+ ++DA +L        E    +++ +A    V+VGGG  G+
Sbjct: 112 --NYFGIPGA-AEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGV 168

Query: 176 ELSAAL-----------KINNIDVSMVYPEPWCMPRL---FTADIAAFYEGYYANKGIKI 221
           EL+  L           +++  ++ ++  E    PR+   F   ++ + E      G+++
Sbjct: 169 ELAGELAERLHRLLKKFRVDPSELRVILVE--AGPRILPMFPPKLSKYAERALEKLGVEV 226

Query: 222 IKGTVAVGFTTNADGEVKEVKLKDG-RTLEADIVV--VGVGGRPLISLFKGQVAENKGGI 278
           + GT  V   T    +   V LKDG   + AD VV   GV   PL+    G   + +G +
Sbjct: 227 LLGT-PV---TEVTPDG--VTLKDGEEEIPADTVVWAAGVRASPLLKDLSGLETDRRGRL 280

Query: 279 ETDDFFK-TSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTV 337
             +   +     D++A GD A                  A +  E A K I A   GK +
Sbjct: 281 VVNPTLQVPGHPDIFAAGDCAAVIDPRPVPPT----AQAAHQQGEYAAKNIKARLKGKPL 336

Query: 338 TGYDYLPY 345
             + Y   
Sbjct: 337 KPFKYKDK 344

Length = 405

>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

 Score = 94.6 bits (236), Expect = 4e-21
 Identities = 87/358 (24%), Positives = 133/358 (37%), Gaps = 80/358 (22%)

Query: 3   EKSFKYVILGGGVSAGY-AAREFAKQGVKPGELAIISKEVA-----------PYERPALS 50
            K +  V++G G  AGY AA   A+ G+K   +A++ K              P      S
Sbjct: 2   MKEYDVVVIGAG-PAGYVAAIRAAQLGLK---VALVEKGERLGGTCLNVGCIP------S 51

Query: 51  KAYLFP-------EGTARLPGFHVCV-------------------GSGGERLLPEWYKEK 84
           KA L            A+  G    V                     G E LL    K+ 
Sbjct: 52  KALLHAAEVIEEARHAAKEYGISAEVPKIDFEKLLARKDKVVRLLTGGVEGLL----KKN 107

Query: 85  GIELILST-EIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFY 143
           G+++I      V       T      +      ++IATGS        G++GA    I  
Sbjct: 108 GVDVIRGEARFVDPHTVEVTGEDKETITADN--IIIATGSRPRIPPGPGIDGA---RILD 162

Query: 144 LREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFT 203
             +     +L +++        V+VGGGYIGLE ++        V++V      +P    
Sbjct: 163 SSDALFLLELPKSL--------VIVGGGYIGLEFASVFAALGSKVTVVERGDRILPG-ED 213

Query: 204 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL 263
            +I+          G+KI+  T         DG +  ++  +G T+EAD V+V +G +P 
Sbjct: 214 PEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPN 273

Query: 264 ISLFKGQVAEN-------KGGIETDDFFKTSADDVYAVGDVATFPM---KLYREMRRV 311
                G   EN       +G I+ DD   T+   +YA+GDV   PM       E R  
Sbjct: 274 T---DGLGLENAGVELDDRGFIKVDDQMTTNVPGIYAIGDVIGGPMLAHVAMAEGRIA 328

Length = 454

>gnl|CDD|235660 PRK05976, PRK05976, dihydrolipoamide dehydrogenase; Validated

 Score = 88.0 bits (219), Expect = 7e-19
 Identities = 64/207 (30%), Positives = 94/207 (45%), Gaps = 21/207 (10%)

Query: 117 LVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLE 176
           L+IATGS  + L     +G       Y+   D+A  L    K       V+VGGG IGLE
Sbjct: 146 LLIATGSRPVELPGLPFDGE------YVISSDEALSLETLPK-----SLVIVGGGVIGLE 194

Query: 177 LSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG 236
            ++ L    ++V++V      +P    A+++          G++++ G   +G T   DG
Sbjct: 195 WASMLADFGVEVTVVEAADRILP-TEDAELSKEVARLLKKLGVRVVTGAKVLGLTLKKDG 253

Query: 237 EVKEVKLKDGR--TLEADIVVVGVGGRPL---ISLFKGQVAENKGGIETDDFFKTSADDV 291
            V  V   +G   TLEAD V+V VG RP    I L    +    G I+ DDF +T    +
Sbjct: 254 GVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDVEGGFIQIDDFCQTKERHI 313

Query: 292 YAVGDVATFPMKLYREMRR----VEHV 314
           YA+GDV   P   +  M       EH+
Sbjct: 314 YAIGDVIGEPQLAHVAMAEGEMAAEHI 340

Length = 472

>gnl|CDD|184951 PRK14989, PRK14989, nitrite reductase subunit NirD; Provisional

 Score = 81.3 bits (201), Expect = 2e-16
 Identities = 57/230 (24%), Positives = 107/230 (46%), Gaps = 7/230 (3%)

Query: 78  PEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGAD 137
             +Y++ GI++++    +  +   K + S+ G    Y  L++ATGS         ++G++
Sbjct: 66  EGFYEKHGIKVLVGERAITINRQEKVIHSSAGRTVFYDKLIMATGSYPWIPP---IKGSE 122

Query: 138 AKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC 197
            ++ F  R I+D    +EA  A+++ +  VVGGG +GLE + ALK   ++  ++   P  
Sbjct: 123 TQDCFVYRTIEDL-NAIEAC-ARRSKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPML 180

Query: 198 MPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVG 257
           M                 + G+++      +          K ++  DG  LE D +V  
Sbjct: 181 MAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFS 240

Query: 258 VGGRPLISLFK--GQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLY 305
            G RP   L    G     +GGI  +D  +TS  D+YA+G+ A++  +++
Sbjct: 241 TGIRPQDKLATQCGLAVAPRGGIVINDSCQTSDPDIYAIGECASWNNRVF 290

Length = 847

>gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase

 Score = 80.4 bits (199), Expect = 2e-16
 Identities = 48/194 (24%), Positives = 81/194 (41%), Gaps = 23/194 (11%)

Query: 117 LVIATGSTVLRLT-DFGVEGA---DAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGY 172
           ++IATGS    L   F  +G     +     L E+ +                V++GGG 
Sbjct: 135 IIIATGSRPRSLPGPFDFDGKVVITSTGALNLEEVPE--------------SLVIIGGGV 180

Query: 173 IGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 232
           IG+E ++        V+++      +P    A+++   +     KG+KI+  T       
Sbjct: 181 IGVEFASIFASLGSKVTVIEMLDRILP-GEDAEVSKVLQKALKKKGVKILTNTKVTAVEK 239

Query: 233 NADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFK----GQVAENKGGIETDDFFKTSA 288
           N D    E K  +  TL  + V+V VG +P          G   + +G I  D++ +T+ 
Sbjct: 240 NDDQVTYENKGGETETLTGEKVLVAVGRKPNTEGLGLEKLGVELDERGRIVVDEYMRTNV 299

Query: 289 DDVYAVGDVATFPM 302
             +YA+GDV   PM
Sbjct: 300 PGIYAIGDVIGGPM 313

This model describes dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. Length = 460

>gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed

 Score = 79.4 bits (197), Expect = 4e-16
 Identities = 62/192 (32%), Positives = 96/192 (50%), Gaps = 20/192 (10%)

Query: 117 LVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLE 176
           +++ATGS    L    ++G   + I+   E  + D++ +          VV+GGGYIG+E
Sbjct: 138 IILATGSRPRELPGIEIDG---RVIWTSDEALNLDEVPK--------SLVVIGGGYIGVE 186

Query: 177 LSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG 236
            ++A      +V++V   P  +P     +I+   E     +GIKI  G  A       DG
Sbjct: 187 FASAYASLGAEVTIVEALPRILP-GEDKEISKLAERALKKRGIKIKTGAKAKKVEQTDDG 245

Query: 237 EVKEVKLKDG---RTLEADIVVVGVGGRPLIS---LFKGQVAENKGGIETDDFFKTSADD 290
            V  V L+DG    TLEAD V+V VG RP      L +  V  ++G IE D+  +T+  +
Sbjct: 246 -V-TVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTDRGFIEVDEQLRTNVPN 303

Query: 291 VYAVGDVATFPM 302
           +YA+GD+   PM
Sbjct: 304 IYAIGDIVGGPM 315

Length = 462

>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated

 Score = 76.8 bits (190), Expect = 4e-15
 Identities = 53/191 (27%), Positives = 84/191 (43%), Gaps = 17/191 (8%)

Query: 117 LVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLE 176
           +VIATGS V  +   GV       +    +  + DKL +++         V+GGG IGLE
Sbjct: 134 IVIATGSRVPPIP--GVWLILGDRLLTSDDAFELDKLPKSL--------AVIGGGVIGLE 183

Query: 177 LSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG 236
           L  AL    + V++       +P L   +++   +   + K  KI  G        + D 
Sbjct: 184 LGQALSRLGVKVTVFERGDRILP-LEDPEVSKQAQKILS-KEFKIKLGAKVTSVEKSGDE 241

Query: 237 EVKEVKLKDG-RTLEADIVVVGVGGRPLI---SLFKGQVA-ENKGGIETDDFFKTSADDV 291
           +V+E++      T+EAD V+V  G RP      L    +  + +G    D+  +TS   +
Sbjct: 242 KVEELEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQTSVPGI 301

Query: 292 YAVGDVATFPM 302
           YA GDV   P 
Sbjct: 302 YAAGDVNGKPP 312

Length = 460

>gnl|CDD|215691 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide oxidoreductase

 Score = 68.8 bits (169), Expect = 1e-14
 Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 1/83 (1%)

Query: 164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIK 223
           + VVVGGGYIGLE ++AL      V++V      +   F  +IA   +      GI+++ 
Sbjct: 1   RVVVVGGGYIGLEFASALAKLGSKVTVVERRDRLLR-GFDEEIAKILQEKLEKNGIEVLL 59

Query: 224 GTVAVGFTTNADGEVKEVKLKDG 246
            T       N DG V ++K  DG
Sbjct: 60  NTTVEEIEGNGDGVVVKLKTGDG 82

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 82

>gnl|CDD|235701 PRK06116, PRK06116, glutathione reductase; Validated

 Score = 72.9 bits (180), Expect = 6e-14
 Identities = 52/187 (27%), Positives = 74/187 (39%), Gaps = 25/187 (13%)

Query: 118 VIATGSTVLRLTDFGVE-GADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLE 176
           +IATG         G E G  +   F L E+                +  VVG GYI +E
Sbjct: 136 LIATGGRPSIPDIPGAEYGITSDGFFALEELPK--------------RVAVVGAGYIAVE 181

Query: 177 LSAALKINNIDVSMVY--PEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNA 234
            +  L     +  +      P    R F  DI          KGI++    V      NA
Sbjct: 182 FAGVLNGLGSETHLFVRGDAPL---RGFDPDIRETLVEEMEKKGIRLHTNAVPKAVEKNA 238

Query: 235 DGEVKEVKLKDGRTLEADIVVVGVGGRPL---ISLFKGQVAENKGG-IETDDFFKTSADD 290
           DG +  + L+DG TL  D ++  +G  P    + L    V  N+ G I  D++  T+   
Sbjct: 239 DGSLT-LTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQNTNVPG 297

Query: 291 VYAVGDV 297
           +YAVGDV
Sbjct: 298 IYAVGDV 304

Length = 450

>gnl|CDD|184103 PRK13512, PRK13512, coenzyme A disulfide reductase; Provisional

 Score = 70.6 bits (173), Expect = 4e-13
 Identities = 66/254 (25%), Positives = 112/254 (44%), Gaps = 46/254 (18%)

Query: 78  PEWYKE-KGIELILSTEIVRADIASKTLL---SATGLIFK--YQILVIATGSTVLRLTDF 131
           PE + + K I +    E++  +   +T+      T   F+  Y  L+++ G++   L   
Sbjct: 64  PEKFYDRKQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSL--- 120

Query: 132 GVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMV 191
              G ++   F LR ++D D + + IKA +  KA+VVG GYI LE+   L    +  +++
Sbjct: 121 ---GFESDITFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLI 177

Query: 192 YPEPWCMPRLFTADI--AAFYE------GYYANKGIKIIKGTVAVGFTTNADGEVKEVKL 243
           +     + +L  AD+      E       Y  N+ I  I G               EV  
Sbjct: 178 HRSDK-INKLMDADMNQPILDELDKREIPYRLNEEIDAING--------------NEVTF 222

Query: 244 KDGRTLEADIVVVGVGGRPLISLFKGQVAE--NKGGIETDDFFKTSADDVYAVGDVATFP 301
           K G+    D+++ GVG  P     +    +  +KG I  +D F+T+  ++YA+GD+ T  
Sbjct: 223 KSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDDKGFIPVNDKFETNVPNIYAIGDIIT-- 280

Query: 302 MKLYREMRRVEHVD 315
              YR      HVD
Sbjct: 281 -SHYR------HVD 287

Length = 438

>gnl|CDD|181142 PRK07846, PRK07846, mycothione reductase; Reviewed

 Score = 68.4 bits (168), Expect = 2e-12
 Identities = 64/224 (28%), Positives = 106/224 (47%), Gaps = 26/224 (11%)

Query: 99  IASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLRE-IDDADKLVEAI 157
           I  KTL +  G       +VIA GS   R     V  AD+   ++  + I    +L E++
Sbjct: 114 IGPKTLRTGDGEEITADQVVIAAGS---RPVIPPVI-ADSGVRYHTSDTIMRLPELPESL 169

Query: 158 KAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAA-FYEGYYAN 216
                   V+VGGG+I  E +       + V++V      + R    DI+  F E   A+
Sbjct: 170 --------VIVGGGFIAAEFAHVFSALGVRVTVVNRSG-RLLRHLDDDISERFTE--LAS 218

Query: 217 KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP---LISLFKGQVAE 273
           K   +  G   VG + +  G    ++L DG T+EAD+++V  G  P   L+      V  
Sbjct: 219 KRWDVRLGRNVVGVSQDGSG--VTLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDV 276

Query: 274 NKGG-IETDDFFKTSADDVYAVGDVAT-FPMK--LYREMRRVEH 313
           ++ G +  D++ +TSA+ V+A+GDV++ + +K     E R V+H
Sbjct: 277 DEDGRVVVDEYQRTSAEGVFALGDVSSPYQLKHVANHEARVVQH 320

Length = 451

>gnl|CDD|179902 PRK04965, PRK04965, NADH:flavorubredoxin oxidoreductase; Provisional

 Score = 67.2 bits (165), Expect = 3e-12
 Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 2/132 (1%)

Query: 167 VVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTV 226
           VVGGG IG EL+  L      V++V      +  L   ++++  +      G+ ++  + 
Sbjct: 146 VVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQ 205

Query: 227 AVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKT 286
             G      G      L  GR++E D V+   G RP  +L +        GI  D + +T
Sbjct: 206 LQGLEKTDSGIR--ATLDSGRSIEVDAVIAAAGLRPNTALARRAGLAVNRGIVVDSYLQT 263

Query: 287 SADDVYAVGDVA 298
           SA D+YA+GD A
Sbjct: 264 SAPDIYALGDCA 275

Length = 377

>gnl|CDD|132493 TIGR03452, mycothione_red, mycothione reductase

 Score = 66.3 bits (162), Expect = 1e-11
 Identities = 63/226 (27%), Positives = 98/226 (43%), Gaps = 30/226 (13%)

Query: 99  IASKTLLSATGLIFKYQILVIATGSTVL---RLTDFGVEGADAKNIFYLREIDDADKLVE 155
           +  +TL +  G       +VIA GS       + D GV     ++I  L E      L E
Sbjct: 117 VGPRTLRTGDGEEITGDQIVIAAGSRPYIPPAIADSGVRYHTNEDIMRLPE------LPE 170

Query: 156 AIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYA 215
           ++        V+VGGGYI  E +         V++V      + R    DI+  +    A
Sbjct: 171 SL--------VIVGGGYIAAEFAHVFSALGTRVTIVNRST-KLLRHLDEDISDRFTEI-A 220

Query: 216 NKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP---LISLFKGQVA 272
            K   I  G        + DG    + L DG T+ AD+++V  G  P   L+      V 
Sbjct: 221 KKKWDIRLGRNVTAVEQDGDGVT--LTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVE 278

Query: 273 ENKGG-IETDDFFKTSADDVYAVGDVATFPMKLYR----EMRRVEH 313
            ++ G I+ D++ +TSA  V+A+GDV++ P +L      E R V+H
Sbjct: 279 VDEDGRIKVDEYGRTSARGVWALGDVSS-PYQLKHVANAEARVVKH 323

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. Length = 452

>gnl|CDD|236106 PRK07818, PRK07818, dihydrolipoamide dehydrogenase; Reviewed

 Score = 64.7 bits (158), Expect = 3e-11
 Identities = 56/187 (29%), Positives = 88/187 (47%), Gaps = 19/187 (10%)

Query: 117 LVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLE 176
            +IATGS+   L   G   ++  N+    E   + +L ++I        V+ G G IG+E
Sbjct: 139 AIIATGSSTRLLP--GTSLSE--NVVTYEEQILSRELPKSI--------VIAGAGAIGME 186

Query: 177 LSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG 236
            +  LK   +DV++V      +P    A+++      Y   G+KI+ GT       N   
Sbjct: 187 FAYVLKNYGVDVTIVEFLDRALP-NEDAEVSKEIAKQYKKLGVKILTGTKVESIDDNGSK 245

Query: 237 EVKEVKLKDGR--TLEADIVVVGVGGRPLIS---LFKGQVA-ENKGGIETDDFFKTSADD 290
               V  KDG+   LEAD V+  +G  P +    L K  VA  ++G I  DD+ +T+   
Sbjct: 246 VTVTVSKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDYMRTNVPH 305

Query: 291 VYAVGDV 297
           +YA+GDV
Sbjct: 306 IYAIGDV 312

Length = 466

>gnl|CDD|233700 TIGR02053, MerA, mercuric reductase

 Score = 63.6 bits (155), Expect = 6e-11
 Identities = 74/334 (22%), Positives = 129/334 (38%), Gaps = 55/334 (16%)

Query: 6   FKYVILGGGVSAGYAAREFAKQGVK-------------------PGELAIISKEVAPYER 46
           +  VI+G G +A  AA + A+ G                     P ++ + + EVA Y R
Sbjct: 1   YDLVIIGSGAAAFAAAIKAAELGASVAMVERGPLGGTCVNVGCVPSKMLLRAAEVAHYAR 60

Query: 47  PA---LSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKGIELILST--EIVR--ADI 99
                   A +  +    L         G   ++ E   EK  +++ S   + +R  A  
Sbjct: 61  KPPFGGLAATVAVDFGELL--------EGKREVVEELRHEKYEDVLSSYGVDYLRGRARF 112

Query: 100 ASKTLLSATGL--IFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAI 157
                +       +   +  +IATG+                 I  L+E        EA+
Sbjct: 113 KDPKTVKVDLGREVRGAKRFLIATGAR-----------PAIPPIPGLKEAGYLTS-EEAL 160

Query: 158 KAKKNGKAVVV-GGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYAN 216
              +  +++ V GGG IG+EL+ A      +V+++      +PR    +I+A  E   A 
Sbjct: 161 ALDRIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPR-EEPEISAAVEEALAE 219

Query: 217 KGIKIIKGTVAVGFTTNADGEVKEVKLKDG-RTLEADIVVVGVGGRPLISLFKGQVA--- 272
           +GI+++        +    G++  V+   G   +EAD ++V  G RP       + A   
Sbjct: 220 EGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVK 279

Query: 273 -ENKGGIETDDFFKTSADDVYAVGDVATFPMKLY 305
            + +GGI  D+  +TS   +YA GDV       Y
Sbjct: 280 LDERGGILVDETLRTSNPGIYAAGDVTGGLQLEY 313

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH [Cellular processes, Detoxification]. Length = 463

>gnl|CDD|185553 PTZ00318, PTZ00318, NADH dehydrogenase-like protein; Provisional

 Score = 62.9 bits (153), Expect = 1e-10
 Identities = 57/215 (26%), Positives = 90/215 (41%), Gaps = 36/215 (16%)

Query: 113 KYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDA----DKLVEAIKAKKNGKA--- 165
            Y  LV+A G+   R   F + G + +  F+L+E++ A     ++V+ I+          
Sbjct: 113 PYDKLVVAHGA---RPNTFNIPGVE-ERAFFLKEVNHARGIRKRIVQCIERASLPTTSVE 168

Query: 166 --------VVVGGGYIGLELSAAL-KINNIDVSMVYPE--PWCMPRLFTA--DIAAFYEG 212
                   VVVGGG  G+E +A L      DV  + PE    C   +  A  ++   ++ 
Sbjct: 169 ERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQ 228

Query: 213 YYANKGIKIIKGTVAVGFTTNADGEVKEVK-----LKDGRTLEADIVV--VGVGGRPLIS 265
                G + ++    +G        VKEV      LKDG  +   +VV   GVG  PL  
Sbjct: 229 ALRKYGQRRLR---RLGVDIRTKTAVKEVLDKEVVLKDGEVIPTGLVVWSTGVGPGPLTK 285

Query: 266 LFKGQVAENKGGIETDDFFKTS-ADDVYAVGDVAT 299
             K     ++G I  DD  +     +V+A+GD A 
Sbjct: 286 QLKVD-KTSRGRISVDDHLRVKPIPNVFALGDCAA 319

Length = 424

>gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated

 Score = 61.8 bits (151), Expect = 2e-10
 Identities = 36/137 (26%), Positives = 60/137 (43%), Gaps = 6/137 (4%)

Query: 166 VVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGT 225
           V++GGGYIGLE +   +    +V+++   P  +PR    D+AA        +GI +    
Sbjct: 175 VIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR-EDEDVAAAVREILEREGIDVRLNA 233

Query: 226 VAVGFTTNADGEVKEVKLKDGR-TLEADIVVVGVGGRPLIS---LFKGQVA-ENKGGIET 280
             +    + DG    +    G   +    ++V VG  P      L    V  + +G I+ 
Sbjct: 234 ECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKV 293

Query: 281 DDFFKTSADDVYAVGDV 297
           DD  +T+   +YA GD 
Sbjct: 294 DDQLRTTNPGIYAAGDC 310

Length = 463

>gnl|CDD|180409 PRK06115, PRK06115, dihydrolipoamide dehydrogenase; Reviewed

 Score = 59.9 bits (145), Expect = 9e-10
 Identities = 74/258 (28%), Positives = 111/258 (43%), Gaps = 40/258 (15%)

Query: 94  IVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKL 153
           +V+A+  S+T L A       + +VIATGS    L   GV   D + I    +   A  L
Sbjct: 124 VVKAEDGSETQLEA-------KDIVIATGSEPTPLP--GVT-IDNQRII---DSTGALSL 170

Query: 154 VEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMV-YPEPWCMPRLFTADIAAFYEG 212
            E  K       VV+G G IGLEL +  +     V++V Y +  C P   T + A   + 
Sbjct: 171 PEVPK-----HLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRIC-PGTDT-ETAKTLQK 223

Query: 213 YYANKGIKIIKGTVAVGFTTNADG---EVKEVKLKDGRTLEADIVVVGVGGRPL---ISL 266
               +G+K   G+   G T  ADG    ++        TL+AD V+V +G RP    + L
Sbjct: 224 ALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGL 283

Query: 267 FKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVK 326
               +  +K G+  +D  +TS   V+ +GDV + PM              A K+ ++AV 
Sbjct: 284 ETVGLETDKRGMLANDHHRTSVPGVWVIGDVTSGPML-------------AHKAEDEAVA 330

Query: 327 TIMATEGGKTVTGYDYLP 344
            I    G      Y  +P
Sbjct: 331 CIERIAGKAGEVNYGLIP 348

Length = 466

>gnl|CDD|213618 TIGR01424, gluta_reduc_2, glutathione-disulfide reductase, plant

 Score = 59.1 bits (143), Expect = 2e-09
 Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 6/137 (4%)

Query: 165 AVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKG 224
            ++ GGGYI +E +   +   +  +++Y     + R F  D+          +GI+I+  
Sbjct: 169 ILIAGGGYIAVEFAGIFRGLGVQTTLIYRGKEIL-RGFDDDMRRGLAAALEERGIRILPE 227

Query: 225 TVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL---ISLFKGQVAEN-KGGIET 280
                 + + DG +K   L     + AD+V+   G  P    + L    V  N  G I  
Sbjct: 228 DSITSISKDDDGRLK-ATLSKHEEIVADVVLFATGRSPNTNGLGLEAAGVRLNDLGAIAV 286

Query: 281 DDFFKTSADDVYAVGDV 297
           D++ +TS   +YAVGDV
Sbjct: 287 DEYSRTSTPSIYAVGDV 303

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria [Energy metabolism, Electron transport]. Length = 446

>gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

 Score = 56.5 bits (137), Expect = 6e-09
 Identities = 49/199 (24%), Positives = 79/199 (39%), Gaps = 35/199 (17%)

Query: 117 LVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLE 176
           ++IATG+   +L   G E  + K + Y    D   K             VV+GGG   +E
Sbjct: 107 VIIATGAGARKLGVPGEEEFEGKGVSYCATCDGFFK---------GKDVVVIGGGDSAVE 157

Query: 177 LSAALKINNIDVSMVY------PEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGF 230
            +  L      V++V+       E   + RL              N  I+++  TV    
Sbjct: 158 EALYLSKIAKKVTLVHRRDEFRAEEILVERLK------------KNVKIEVLTNTVVKEI 205

Query: 231 TTNADGEVKEVKLKDGR----TLEADIVVVGVGGRPLISLFKGQVAENKGG-IETDDFFK 285
             +   +V+ V LK+ +     L  D V + +G  P   L KG    ++ G I  D+  +
Sbjct: 206 LGD---DVEGVVLKNVKGEEKELPVDGVFIAIGHLPNTELLKGLGVLDENGYIVVDEEME 262

Query: 286 TSADDVYAVGDVATFPMKL 304
           TS   ++A GDVA    + 
Sbjct: 263 TSVPGIFAAGDVADKNGRQ 281

Length = 305

>gnl|CDD|200098 TIGR01423, trypano_reduc, trypanothione-disulfide reductase

 Score = 55.7 bits (134), Expect = 2e-08
 Identities = 52/189 (27%), Positives = 85/189 (44%), Gaps = 24/189 (12%)

Query: 117 LVIATGSTVLRLTDFGVEGADAKN-IFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGL 175
           +++ATGS    L   G+E   + N  FYL   D+  +           + + VGGG+I +
Sbjct: 155 ILLATGSWPQMLGIPGIEHCISSNEAFYL---DEPPR-----------RVLTVGGGFISV 200

Query: 176 ELSA---ALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 232
           E +    A K     V++ Y     + R F + +           GI I+        T 
Sbjct: 201 EFAGIFNAYKPRGGKVTLCYRNNMIL-RGFDSTLRKELTKQLRANGINIMTNENPAKVTL 259

Query: 233 NADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVA----ENKGGIETDDFFKTSA 288
           NADG  K V  + G+TL+ D+V++ +G  P     +          KG I+ D+F +T+ 
Sbjct: 260 NADGS-KHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQVDEFSRTNV 318

Query: 289 DDVYAVGDV 297
            ++YA+GDV
Sbjct: 319 PNIYAIGDV 327

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. Length = 486

>gnl|CDD|233345 TIGR01292, TRX_reduct, thioredoxin-disulfide reductase

 Score = 54.2 bits (131), Expect = 4e-08
 Identities = 55/224 (24%), Positives = 93/224 (41%), Gaps = 39/224 (17%)

Query: 92  TEIVRADIAS-------KTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADA---KNI 141
            EI+  ++           + +  G  +  + ++IATG++  +L   G+ G D    + +
Sbjct: 71  AEIIYEEVIKVDKSGRPFKVYTGDGKEYTAKAVIIATGASARKL---GIPGEDEFWGRGV 127

Query: 142 FYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNI--DVSMVYPEPWCMP 199
            Y    D            KN +  VVGGG   +E   AL +  I   V++V+       
Sbjct: 128 SYCATCDGP--------FFKNKEVAVVGGGDSAIE--EALYLTRIAKKVTLVHRRD---- 173

Query: 200 RLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG-----RTLEADIV 254
             F A+     +    N  I+ +  +         D +V+ VK+K+        LE D V
Sbjct: 174 -KFRAE-KILLDRLKKNPKIEFLWNSTVKEIV--GDNKVEGVKIKNTVTGEEEELEVDGV 229

Query: 255 VVGVGGRPLISLFKGQVAENKGG-IETDDFFKTSADDVYAVGDV 297
            + +G  P   L KG +  ++ G I TD+  +TS   V+A GDV
Sbjct: 230 FIAIGHEPNTELLKGLLELDENGYIVTDEGMRTSVPGVFAAGDV 273

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070) [Energy metabolism, Electron transport]. Length = 299

>gnl|CDD|235779 PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated

 Score = 53.8 bits (130), Expect = 9e-08
 Identities = 43/154 (27%), Positives = 65/154 (42%), Gaps = 23/154 (14%)

Query: 163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTA---DIAAFYEGYYANKGI 219
            K  V+G G IGLEL +  +    +V+++      +P    A    +A      +  +G+
Sbjct: 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILE----ALPAFLAAADEQVAKEAAKAFTKQGL 239

Query: 220 KIIKGTVAVGFTTNADGEVKEVKLKDG----RTLEADIVVVGVGGRPLISLFKGQVAEN- 274
            I  G V +G        V  V   D     +TLE D ++V +G  P      G   E  
Sbjct: 240 DIHLG-VKIGEIKTGGKGVS-VAYTDADGEAQTLEVDKLIVSIGRVPNT---DGLGLEAV 294

Query: 275 ------KGGIETDDFFKTSADDVYAVGDVATFPM 302
                 +G I  DD  +T+  +VYA+GDV   PM
Sbjct: 295 GLKLDERGFIPVDDHCRTNVPNVYAIGDVVRGPM 328

Length = 475

>gnl|CDD|234134 TIGR03169, Nterm_to_SelD, pyridine nucleotide-disulfide oxidoreductase family protein

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 52/239 (21%), Positives = 89/239 (37%), Gaps = 38/239 (15%)

Query: 82  KEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNI 141
           ++ G   +++ E    D   + +L A      Y +L +  GST       G     A   
Sbjct: 65  RQAGARFVIA-EATGIDPDRRKVLLANRPPLSYDVLSLDVGSTTPLSGVEG----AADLA 119

Query: 142 FYLREIDDADKLVEAIKAK---KNGKA--VVVGGGYIGLELSAAL-----------KINN 185
             ++ I++     EA+        G     VVGGG  G+E++ AL           ++  
Sbjct: 120 VPVKPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTL 179

Query: 186 IDVSMVYPE-PWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK 244
           I  + + P  P  + RL    +A         +GI++              G    + L 
Sbjct: 180 IAGASLLPGFPAKVRRLVLRLLAR--------RGIEVH------EGAPVTRGPDGALILA 225

Query: 245 DGRTLEADIVVVGVGGRPLISLFKGQVA-ENKGGIETDDFFKTSAD-DVYAVGDVATFP 301
           DGRTL AD ++   G R    L +  +  +  G +  D   ++ +   V+A GD A   
Sbjct: 226 DGRTLPADAILWATGARAPPWLAESGLPLDEDGFLRVDPTLQSLSHPHVFAAGDCAVIT 284

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. Length = 364

>gnl|CDD|215281 PLN02507, PLN02507, glutathione reductase

 Score = 52.9 bits (127), Expect = 2e-07
 Identities = 53/209 (25%), Positives = 87/209 (41%), Gaps = 22/209 (10%)

Query: 94  IVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKL 153
           IV  +    T L  T L +  + ++IATGS   R    G E A           D+A  L
Sbjct: 148 IVGPNEVEVTQLDGTKLRYTAKHILIATGSRAQRPNIPGKELAITS--------DEALSL 199

Query: 154 VEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP-RLFTADIAAFYEG 212
            E  K     +AVV+GGGYI +E ++  +     V + + +   +P R F  ++ A    
Sbjct: 200 EELPK-----RAVVLGGGYIAVEFASIWRGMGATVDLFFRKE--LPLRGFDDEMRAVVAR 252

Query: 213 YYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVA 272
               +GI +   T     T    G   +V    G    AD+V+   G  P       +  
Sbjct: 253 NLEGRGINLHPRTNLTQLTKTEGG--IKVITDHGEEFVADVVLFATGRAPNTKRLNLEAV 310

Query: 273 ----ENKGGIETDDFFKTSADDVYAVGDV 297
               +  G ++ D++ +T+   ++A+GDV
Sbjct: 311 GVELDKAGAVKVDEYSRTNIPSIWAIGDV 339

Length = 499

>gnl|CDD|233412 TIGR01438, TGR, thioredoxin and glutathione reductase selenoprotein

 Score = 50.6 bits (121), Expect = 1e-06
 Identities = 55/213 (25%), Positives = 79/213 (37%), Gaps = 22/213 (10%)

Query: 93  EIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADK 152
           E V       T       I+  +  +IATG    R    G+ GA    I      DD   
Sbjct: 123 EFVDKHRIKATNKKGKEKIYSAERFLIATG---ERPRYPGIPGAKELCI----TSDDLFS 175

Query: 153 LVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVS-MVYPEPWCMPRLFTADIAAFYE 211
           L         GK +VVG  Y+ LE +  L    +DV+ MV        R F  D A    
Sbjct: 176 L-----PYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILL---RGFDQDCANKVG 227

Query: 212 GYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD-GRTLEADIVVVGVGGRPL---ISLF 267
            +    G+K  +  V +         + E      G   E D V++ +G       ++L 
Sbjct: 228 EHMEEHGVKFKRQFVPIKVEQIEAKVLVEFTDSTNGIEEEYDTVLLAIGRDACTRKLNLE 287

Query: 268 KGQVAENK--GGIETDDFFKTSADDVYAVGDVA 298
              V  NK  G I  D+  +T+   +YAVGD+ 
Sbjct: 288 NVGVKINKKTGKIPADEEEQTNVPYIYAVGDIL 320

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. Length = 484

>gnl|CDD|236967 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A; Provisional

 Score = 49.4 bits (119), Expect = 2e-06
 Identities = 54/250 (21%), Positives = 99/250 (39%), Gaps = 48/250 (19%)

Query: 79  EWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADA 138
           E   + G+E+  +TE+ R        ++   L   Y  + I TG+ + R    G+ G + 
Sbjct: 198 ERLLKLGVEIRTNTEVGRD-------ITLDELRAGYDAVFIGTGAGLPR--FLGIPGENL 248

Query: 139 KNIF----YLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLE-LSAALKINNIDVSMVYP 193
             ++    +L  ++ A    +    K+    VV+GGG   ++    A ++    V++VY 
Sbjct: 249 GGVYSAVDFLTRVNQAVADYDLPVGKR---VVVIGGGNTAMDAARTAKRLGAESVTIVY- 304

Query: 194 EPWCMPRLFTADI-AAFYEGYYA-NKGIKIIKGTVAVGFTTNADG----EVKEVKLKDGR 247
                 R    ++ A+  E  +A  +G++       V    +       E   ++L +  
Sbjct: 305 ------RRGREEMPASEEEVEHAKEEGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPD 358

Query: 248 --------------TLEADIVVVGVGGRP---LISLFKGQVAENKGGIETDDF-FKTSAD 289
                         TL AD+V+  +G  P   ++S   G      G I  DD   +TS  
Sbjct: 359 ASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLILSTTPGLELNRWGTIIADDETGRTSLP 418

Query: 290 DVYAVGDVAT 299
            V+A GD+ T
Sbjct: 419 GVFAGGDIVT 428

Length = 457

>gnl|CDD|130488 TIGR01421, gluta_reduc_1, glutathione-disulfide reductase, animal/bacterial

 Score = 49.1 bits (117), Expect = 3e-06
 Identities = 47/188 (25%), Positives = 84/188 (44%), Gaps = 23/188 (12%)

Query: 117 LVIATGSTVLRLTDF-GVE-GADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIG 174
           ++IATG       +  G E G D+   F L E+                + V+VG GYI 
Sbjct: 133 ILIATGGKPSFPENIPGAELGTDSDGFFALEELP--------------KRVVIVGAGYIA 178

Query: 175 LELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNA 234
           +EL+  L     +  +V      + R F + I+      Y  +GI + K +  V      
Sbjct: 179 VELAGVLHGLGSETHLVIRHERVL-RSFDSMISETITEEYEKEGINVHKLSKPVKVEKTV 237

Query: 235 DGEVKEVKLKDGRTL-EADIVVVGVGGRPL---ISLFKGQVAEN-KGGIETDDFFKTSAD 289
           +G++  +  +DG+++ + D ++  +G +P    + L    +  N KG I  D++  T+  
Sbjct: 238 EGKLV-IHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEYQNTNVP 296

Query: 290 DVYAVGDV 297
            +YA+GDV
Sbjct: 297 GIYALGDV 304

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria [Energy metabolism, Electron transport]. Length = 450

>gnl|CDD|180743 PRK06912, acoL, dihydrolipoamide dehydrogenase; Validated

 Score = 48.6 bits (116), Expect = 4e-06
 Identities = 40/139 (28%), Positives = 63/139 (45%), Gaps = 11/139 (7%)

Query: 166 VVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGT 225
           ++VGGG IG E ++        V++V   P  +P     DIA        N G+KI  G 
Sbjct: 174 LIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPGE-DEDIAHILREKLENDGVKIFTGA 232

Query: 226 VAVGFTTNADGEVKEVKLK-DGRTLE--ADIVVVGVGGRPL---ISLFKGQVAENKGGIE 279
              G     +   K+   + +G   E  A+ V+V VG +P    ++L K  V  +  GI 
Sbjct: 233 ALKGL----NSYKKQALFEYEGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKGIS 288

Query: 280 TDDFFKTSADDVYAVGDVA 298
            ++  +T+   +YA GDV 
Sbjct: 289 VNEHMQTNVPHIYACGDVI 307

Length = 458

>gnl|CDD|237213 PRK12810, gltD, glutamate synthase subunit beta; Reviewed

 Score = 47.5 bits (114), Expect = 8e-06
 Identities = 68/298 (22%), Positives = 112/298 (37%), Gaps = 94/298 (31%)

Query: 79  EWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADA 138
           E  + +GIE   + E+ + DI ++ LL+      +Y  + + TG+   R  D G+ G D 
Sbjct: 201 ELMEAEGIEFRTNVEVGK-DITAEELLA------EYDAVFLGTGAYKPR--DLGIPGRDL 251

Query: 139 KNIF----YLREI---DDADKLVEAIKAKKNGKAVVV-GGGYIG-------LELSAA--- 180
             +     +L +       D+    I AK  GK VVV GGG  G       +   A    
Sbjct: 252 DGVHFAMDFLIQNTRRVLGDETEPFISAK--GKHVVVIGGGDTGMDCVGTAIRQGAKSVT 309

Query: 181 -LKINNI-----DVSMVYPEPWCM------------PRLFTADIAAFYEGYYANKGIKII 222
              I  +     + +  +P  W M             R F      F        G+K++
Sbjct: 310 QRDIMPMPPSRRNKNNPWPY-WPMKLEVSNAHEEGVEREFNVQTKEFEGENGKVTGVKVV 368

Query: 223 KGTVAVGFTTNADGEVKEVKLKDG--RTLEADIVVVGVGGRPLISLFKGQVAE--NKGGI 278
           +    +G     +G+ + V   +G    L AD+V++ +G       F G  A    + G+
Sbjct: 369 R--TELG-----EGDFEPV---EGSEFVLPADLVLLAMG-------FTGPEAGLLAQFGV 411

Query: 279 ETDD---------FFKTSADDVYAVGDVATFPMKLYREMRR-----VEHVDHARKSAE 322
           E D+          ++TS   V+A GD           MRR     V  +   R++A 
Sbjct: 412 ELDERGRVAAPDNAYQTSNPKVFAAGD-----------MRRGQSLVVWAIAEGRQAAR 458

Length = 471

>gnl|CDD|180907 PRK07251, PRK07251, pyridine nucleotide-disulfide oxidoreductase; Provisional

 Score = 47.4 bits (113), Expect = 9e-06
 Identities = 47/188 (25%), Positives = 78/188 (41%), Gaps = 24/188 (12%)

Query: 117 LVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLE 176
           +VI TG+    L   G+  AD+K+++    I   + L E        +  ++GGG IGLE
Sbjct: 122 IVINTGAVSNVLPIPGL--ADSKHVYDSTGIQSLETLPE--------RLGIIGGGNIGLE 171

Query: 177 LSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG 236
            +         V+++      +PR     +AA  + Y    GI  +          N   
Sbjct: 172 FAGLYNKLGSKVTVLDAASTILPR-EEPSVAALAKQYMEEDGITFLLN-AHTTEVKNDGD 229

Query: 237 EVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAEN-------KGGIETDDFFKTSAD 289
           +V  + + +  T   D ++   G +P          EN       +G I+ DD+ +TS  
Sbjct: 230 QV--LVVTEDETYRFDALLYATGRKPNTE---PLGLENTDIELTERGAIKVDDYCQTSVP 284

Query: 290 DVYAVGDV 297
            V+AVGDV
Sbjct: 285 GVFAVGDV 292

Length = 438

>gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase; Provisional

 Score = 47.5 bits (114), Expect = 9e-06
 Identities = 52/224 (23%), Positives = 87/224 (38%), Gaps = 48/224 (21%)

Query: 93  EIVRADIASKTLLSATGLIFKYQILVIATGSTVLR--LTDFGVEGADAKNIFYLREIDDA 150
           E+   D      L+A         +VIATGS   R    DF     D   I+      D+
Sbjct: 125 EVECPD-GEVETLTAD-------KIVIATGSRPYRPPDVDF-----DHPRIY------DS 165

Query: 151 DKLVEAIKAKKNGKAVVVGGGYIGLELS---AALKINNIDVSMVYPEPWCMPRLFTADIA 207
           D ++      +    ++ G G IG E +   AAL    + V+++      +  L      
Sbjct: 166 DSILSLDHLPR--SLIIYGAGVIGCEYASIFAAL---GVKVTLINTRDRLLSFLDDEISD 220

Query: 208 AFYEGYYA--NKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVG------ 259
           A     Y   + G+ I             DG +  V LK G+ ++AD ++   G      
Sbjct: 221 ALS---YHLRDSGVTIRHNEEVEKVEGGDDGVI--VHLKSGKKIKADCLLYANGRTGNTD 275

Query: 260 --GRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFP 301
                   L     A+++G ++ ++ ++T+   +YAVGDV  FP
Sbjct: 276 GLNLENAGL----EADSRGQLKVNENYQTAVPHIYAVGDVIGFP 315

Length = 461

>gnl|CDD|162300 TIGR01317, GOGAT_sm_gam, glutamate synthases, NADH/NADPH, small subunit

 Score = 47.1 bits (112), Expect = 1e-05
 Identities = 62/258 (24%), Positives = 105/258 (40%), Gaps = 56/258 (21%)

Query: 84  KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFY 143
           +GI+ + +TEI   DI++  L        ++  +V+A G+T  R  D  + G + K I Y
Sbjct: 206 EGIDFVTNTEIGV-DISADELKE------QFDAVVLAGGATKPR--DLPIPGRELKGIHY 256

Query: 144 LREIDDA-------DKLVEAIKAKKNGKAVVV-GGGYIGLE-LSAALKINNIDVSM--VY 192
             E   +           + I  K  GK VVV GGG  G + +  +L+     V    + 
Sbjct: 257 AMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIM 316

Query: 193 PEP---------W-CMPRLFTADIAAFYEGYYANKGIKIIKGTVAV-GFTTNADGEVKEV 241
           P+P         W   PR++  D A  +E   A+ G    + ++    F  + +G+V  +
Sbjct: 317 PKPPEARAKDNPWPEWPRVYRVDYA--HEEAAAHYGRDPREYSILTKEFIGDDEGKVTAL 374

Query: 242 --------KLKDGR-----------TLEADIVVVGVG----GRPLISLFKGQVAENKGGI 278
                   K +DG+             EAD+V++ +G     + L+  F  +        
Sbjct: 375 RTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQILLDDFGVKKTRRGNIS 434

Query: 279 ETDDFFKTSADDVYAVGD 296
              D + TS   V+A GD
Sbjct: 435 AGYDDYSTSIPGVFAAGD 452

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. Length = 485

>gnl|CDD|236112 PRK07845, PRK07845, flavoprotein disulfide reductase; Reviewed

 Score = 47.2 bits (113), Expect = 1e-05
 Identities = 55/190 (28%), Positives = 85/190 (44%), Gaps = 26/190 (13%)

Query: 116 ILVIATGST--VLRLTDFGVEGA--DAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGG 171
           +++IATG++  +L         A  D + I   R++ D D+L E          +VVG G
Sbjct: 142 VVLIATGASPRILP-------TAEPDGERILTWRQLYDLDELPE--------HLIVVGSG 186

Query: 172 YIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFT 231
             G E ++A     + V++V      +P    AD A   E  +A +G+ ++K + A    
Sbjct: 187 VTGAEFASAYTELGVKVTLVSSRDRVLPGE-DADAAEVLEEVFARRGMTVLKRSRAESVE 245

Query: 232 TNADGEVKEVKLKDGRTLEADIVVVGVGGRPL---ISLFKGQVAENKGG-IETDDFFKTS 287
              DG V  V L DGRT+E    ++ VG  P    + L +  V     G I  D   +TS
Sbjct: 246 RTGDGVV--VTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDRVSRTS 303

Query: 288 ADDVYAVGDV 297
              +YA GD 
Sbjct: 304 VPGIYAAGDC 313

Length = 466

>gnl|CDD|181196 PRK08010, PRK08010, pyridine nucleotide-disulfide oxidoreductase; Provisional

 Score = 46.9 bits (111), Expect = 1e-05
 Identities = 35/139 (25%), Positives = 68/139 (48%), Gaps = 8/139 (5%)

Query: 163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKII 222
           G   ++GGGYIG+E ++        V+++      +PR    DIA        ++G+ II
Sbjct: 159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPRE-DRDIADNIATILRDQGVDII 217

Query: 223 KGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQ---VAEN-KGGI 278
                V   ++ + +V +V  +  +    D +++  G +P  +    +   +A N +G I
Sbjct: 218 L-NAHVERISHHENQV-QVHSEHAQLA-VDALLIASGRQPATASLHPENAGIAVNERGAI 274

Query: 279 ETDDFFKTSADDVYAVGDV 297
             D +  T+AD+++A+GDV
Sbjct: 275 VVDKYLHTTADNIWAMGDV 293

Length = 441

>gnl|CDD|172486 PRK13984, PRK13984, putative oxidoreductase; Provisional

 Score = 45.5 bits (108), Expect = 4e-05
 Identities = 88/338 (26%), Positives = 142/338 (42%), Gaps = 78/338 (23%)

Query: 4   KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTAR-- 61
           K+ K  I+G G  AG +A  F         LA +  EV  YE  +LSK    P G  R  
Sbjct: 282 KNKKVAIVGSG-PAGLSAAYF---------LATMGYEVTVYE--SLSK----PGGVMRYG 325

Query: 62  LPGFHVCVGSGGERLLPEWYKEKGIELI--LSTEI-----VRADIASKTLLSATGLIFKY 114
           +P +           LP+   +K I  I  L  +I     V  DI  + L        K+
Sbjct: 326 IPSYR----------LPDEALDKDIAFIEALGVKIHLNTRVGKDIPLEELRE------KH 369

Query: 115 QILVIATGSTVLRLTDFGVEGADAKNIF----YLREIDDADKLVEAIKAKKNGKAVVVGG 170
             + ++TG T+ R T   + G D  ++      LREI D  +  E  K K     VV+GG
Sbjct: 370 DAVFLSTGFTLGRST--RIPGTDHPDVIQALPLLREIRDYLR-GEGPKPKIPRSLVVIGG 426

Query: 171 GYIGLELSAAL-KINNIDVSMVYPEPWCMPRLFT---ADIAAFYEGYYANKGIKIIKGTV 226
           G + ++++ ++ ++  ++   V  +   + R F    AD+    EG    +G+ I  G  
Sbjct: 427 GNVAMDIARSMARLQKMEYGEVNVKVTSLERTFEEMPADMEEIEEG--LEEGVVIYPGWG 484

Query: 227 AVGFTTNADGEVKEVKLK--------DGR-----------TLEADIVVVGVGGRPLISLF 267
            +      + +VK VK K        +GR            +EAD+VV  +G  P  S  
Sbjct: 485 PMEVVIE-NDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPDYSYL 543

Query: 268 KGQVAE----NKGGIETDDFFKTSADDVYAVGDVATFP 301
             ++       +G I T+++ +TS   ++A GD+   P
Sbjct: 544 PEELKSKLEFVRGRILTNEYGQTSIPWLFAGGDIVHGP 581

Length = 604

>gnl|CDD|223567 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

 Score = 44.6 bits (106), Expect = 8e-05
 Identities = 60/259 (23%), Positives = 93/259 (35%), Gaps = 60/259 (23%)

Query: 82  KEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNI 141
           +  G+E  L+  + R DI  + LL       +Y  + +ATG+   R     + G DAK +
Sbjct: 184 ERSGVEFKLNVRVGR-DITLEELLK------EYDAVFLATGAGKPR--PLDIPGEDAKGV 234

Query: 142 F----YL----REIDDADKLVEAIKAKKNGKAVVVGGGYIGLE-LSAALKINNIDVSMVY 192
                +L    +E+           AK   + VV+GGG   ++    AL++    V+  Y
Sbjct: 235 AFALDFLTRLNKEVLGDFAEDRTPPAK-GKRVVVIGGGDTAMDCAGTALRLGAKSVTCFY 293

Query: 193 PE-------PWCMPRLFTADIAAFYEGYYA-NKGIKIIKGTVAVGFTTNADGEVKEVKLK 244
            E        W          AA  E   A  +G++ +       F  N  G V  VK  
Sbjct: 294 REDRDDETNEWPT-------WAAQLEVRSAGEEGVERLPFVQPKAFIGNEGGRVTGVKFG 346

Query: 245 DGR---------------------TLEADIV--VVGVGGRPLI-SLFKGQVAENKGG-IE 279
                                   T  AD V   +G  G      L +  +  +K G I+
Sbjct: 347 RVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIK 406

Query: 280 TDDFFK-TSADDVYAVGDV 297
            D+  + TS   V+A GD 
Sbjct: 407 VDENLQQTSIPGVFAGGDA 425

Length = 457

>gnl|CDD|180579 PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 36/152 (23%), Positives = 57/152 (37%), Gaps = 20/152 (13%)

Query: 163 GKAVVVGGGYIGLELS---AALKINNIDVSMVYPEPWCMPRLFTA---DIAAFYEGYYAN 216
            + +V+GGG IGLE+      L      V M         ++  A   DI   +      
Sbjct: 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEM-------FDQVIPAADKDIVKVFTKRIKK 227

Query: 217 KGIKIIKGTVAVGFTTNADGEVKEVKLKDG--RTLEADIVVVGVGGRPLISLFKGQVA-- 272
           +   I+  T         DG    ++ K         D V+V VG  P   L   + A  
Sbjct: 228 Q-FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGV 286

Query: 273 --ENKGGIETDDFFKTSADDVYAVGDVATFPM 302
             + +G I  D   +T+   ++A+GD+   PM
Sbjct: 287 EVDERGFIRVDKQCRTNVPHIFAIGDIVGQPM 318

Length = 471

>gnl|CDD|237790 PRK14694, PRK14694, putative mercuric reductase; Provisional

 Score = 42.2 bits (99), Expect = 3e-04
 Identities = 35/147 (23%), Positives = 66/147 (44%), Gaps = 16/147 (10%)

Query: 166 VVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTAD---IAAFYEGYYANKGIKII 222
           +V+G   + LEL+ A       V+++        R+ + +   +    E  +  +GI+++
Sbjct: 182 LVIGASVVALELAQAFARLGSRVTVL-----ARSRVLSQEDPAVGEAIEAAFRREGIEVL 236

Query: 223 KGTVAVGFTTNADGEVKEVKLK-DGRTLEADIVVVGVGGRP---LISLFKGQVAENKGGI 278
           K T A    +  D   +E  L+ +  TL A+ ++V  G  P    ++L    V   +G I
Sbjct: 237 KQTQA----SEVDYNGREFILETNAGTLRAEQLLVATGRTPNTENLNLESIGVETERGAI 292

Query: 279 ETDDFFKTSADDVYAVGDVATFPMKLY 305
             D+  +T+   +YA GD    P  +Y
Sbjct: 293 RIDEHLQTTVSGIYAAGDCTDQPQFVY 319

Length = 468

>gnl|CDD|237197 PRK12770, PRK12770, putative glutamate synthase subunit beta; Provisional

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 67/275 (24%), Positives = 103/275 (37%), Gaps = 66/275 (24%)

Query: 83  EKGIELILSTEIV--------RADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVE 134
           E G+     T++           D   + ++S   L+ KY  ++IATG+   R    G+ 
Sbjct: 80  EAGVVFHTRTKVCCGEPLHEEEGDEFVERIVSLEELVKKYDAVLIATGTWKSRK--LGIP 137

Query: 135 GADAKNIF----YLREIDDADKLVEAIKAK----KNGKAVVVGGGYIGLELSAALKINNI 186
           G D   ++    YL  I  A KL      K    +  K VVVG G   ++  AAL+   +
Sbjct: 138 GEDLPGVYSALEYLFRIR-AAKLGYLPWEKVPPVEGKKVVVVGAGLTAVD--AALEAVLL 194

Query: 187 ---DVSMVYPEPWCMPRLFTADIAAFYEGYY-----ANKGIKIIKGTVAVGFTTNADGEV 238
               V + Y             I     G Y       +G++ ++    V      +G V
Sbjct: 195 GAEKVYLAYRRT----------INEAPAGKYEIERLIARGVEFLELVTPVRI--IGEGRV 242

Query: 239 KEVKLKDGR--------------------TLEADIVVVGVGGRPLISLFKGQVA----EN 274
           + V+L   R                     LEAD VV  +G  P    F  +        
Sbjct: 243 EGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIP-TPPFAKECLGIELNR 301

Query: 275 KGGIETDDFFKTSADDVYAVGDVATFPMKLYREMR 309
           KG I  D+   TS + V+A GDV T P K+ + ++
Sbjct: 302 KGEIVVDEKHMTSREGVFAAGDVVTGPSKIGKAIK 336

Length = 352

>gnl|CDD|185420 PTZ00058, PTZ00058, glutathione reductase; Provisional

 Score = 42.3 bits (99), Expect = 5e-04
 Identities = 34/142 (23%), Positives = 53/142 (37%), Gaps = 4/142 (2%)

Query: 158 KAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK 217
           K K+  +  + G GYI +EL   +     + S ++     + R F   I    E      
Sbjct: 233 KIKEAKRIGIAGSGYIAVELINVVNRLGAE-SYIFARGNRLLRKFDETIINELENDMKKN 291

Query: 218 GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP---LISLFKGQVAEN 274
            I II            +  +        +    D V+  VG  P    ++L    +   
Sbjct: 292 NINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTEDLNLKALNIKTP 351

Query: 275 KGGIETDDFFKTSADDVYAVGD 296
           KG I+ DD  +TS   +YAVGD
Sbjct: 352 KGYIKVDDNQRTSVKHIYAVGD 373

Length = 561

>gnl|CDD|215301 PLN02546, PLN02546, glutathione reductase

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 39/143 (27%), Positives = 60/143 (41%), Gaps = 10/143 (6%)

Query: 161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIK 220
           K  K  +VGGGYI LE +        DV  V+     + R F  ++  F     + +GI+
Sbjct: 251 KPEKIAIVGGGYIALEFAGIFNGLKSDVH-VFIRQKKVLRGFDEEVRDFVAEQMSLRGIE 309

Query: 221 IIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP------LISLFKGQVAEN 274
                       +ADG +  +K   G       V+   G +P      L  +  G   + 
Sbjct: 310 FHTEESPQAIIKSADGSL-SLKTNKGTVEGFSHVMFATGRKPNTKNLGLEEV--GVKMDK 366

Query: 275 KGGIETDDFFKTSADDVYAVGDV 297
            G IE D++ +TS   ++AVGDV
Sbjct: 367 NGAIEVDEYSRTSVPSIWAVGDV 389

Length = 558

>gnl|CDD|237200 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 41/162 (25%), Positives = 67/162 (41%), Gaps = 33/162 (20%)

Query: 164 KAVVVGGGYIGLELS-AALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK--GIK 220
           K  VVGGG   ++ +  A ++    V++VY       R    ++ A  E     K  GI+
Sbjct: 572 KVAVVGGGNTAMDSARTAKRLGAERVTIVY-------RRSEEEMPARLEEVKHAKEEGIE 624

Query: 221 IIKGTVAVGFTTNADGEVKEVKLK---------DGR-----------TLEADIVVVGVGG 260
            +     + +  +  G VK+V L+          GR           T++ D+V+V VG 
Sbjct: 625 FLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGV 684

Query: 261 RP---LISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVAT 299
            P   + S   G     KG I  D+  ++S   +YA GD+  
Sbjct: 685 SPNPLVPSSIPGLELNRKGTIVVDEEMQSSIPGIYAGGDIVR 726

Length = 752

>gnl|CDD|130383 TIGR01316, gltA, glutamate synthase (NADPH), homotetrameric

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 79/330 (23%), Positives = 122/330 (36%), Gaps = 77/330 (23%)

Query: 6   FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYE---RPALSKAYLFPEGTARL 62
            K  ++G G +    A E AK G            V  +E   +P     Y  PE   RL
Sbjct: 134 KKVAVIGAGPAGLACASELAKAG----------HSVTVFEALHKPGGVVTYGIPE--FRL 181

Query: 63  PGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATG 122
           P     V +  + L     K+ G+       +V      + L S      +Y  + I TG
Sbjct: 182 P--KEIVVTEIKTL-----KKLGVT-FRMNFLVGKTATLEELFS------QYDAVFIGTG 227

Query: 123 STVLRLTDF-GVE--GADAKNIFYLR-------EIDDADKLVEAIKAKKNGKAVVVGGGY 172
           + + +L +  G E  G  + N F  R       E   AD  V A K       VV+GGG 
Sbjct: 228 AGLPKLMNIPGEELCGVYSANDFLTRANLMKAYEFPHADTPVYAGK-----SVVVIGGGN 282

Query: 173 IGLELS-AALKINNIDVSMVYPEPWCMPRLFTADIAAFYE--GYYANKGIKIIKGTVAVG 229
             ++ +  AL++   +V  +Y       R    D+ A  E   +   +G+K       V 
Sbjct: 283 TAVDSARTALRLG-AEVHCLY-------RRTREDMTARVEEIAHAEEEGVKFHFLCQPVE 334

Query: 230 FTTNADGEVKEVKLKDGR--------------------TLEAD--IVVVGVGGRPLISLF 267
              + +G V+ VK +                        LEAD  IV +G G  P+++  
Sbjct: 335 IIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIMAET 394

Query: 268 KGQVAENKGGIETDDFFKTSADDVYAVGDV 297
                  +G I  D+  +TS   V+A GD+
Sbjct: 395 TRLKTSERGTIVVDEDQRTSIPGVFAGGDI 424

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH [Amino acid biosynthesis, Glutamate family]. Length = 449

>gnl|CDD|132187 TIGR03143, AhpF_homolog, putative alkyl hydroperoxide reductase F subunit

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 40/143 (27%), Positives = 57/143 (39%), Gaps = 20/143 (13%)

Query: 167 VVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKI----- 221
           V+GGG+   E +  L      V+++  EP      FT       E    +  I++     
Sbjct: 148 VIGGGFAAAEEAVFLTRYASKVTVIVREP-----DFTCA-KLIAEKVKNHPKIEVKFNTE 201

Query: 222 ---IKGTVAV---GFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENK 275
                G   +    F  N  GE+ E K           V V VG  P   LFKG V  +K
Sbjct: 202 LKEATGDDGLRYAKFVNNVTGEITEYKAPKDAGTFG--VFVFVGYAPSSELFKGVVELDK 259

Query: 276 GG-IETDDFFKTSADDVYAVGDV 297
            G I T++  +T+   VYA GD+
Sbjct: 260 RGYIPTNEDMETNVPGVYAAGDL 282

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). Length = 555

>gnl|CDD|173442 PTZ00153, PTZ00153, lipoamide dehydrogenase; Provisional

 Score = 40.7 bits (95), Expect = 0.001
 Identities = 50/215 (23%), Positives = 85/215 (39%), Gaps = 37/215 (17%)

Query: 107 ATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAV 166
            +G  FK + ++IATGST     +  V+    K++F     D A KL             
Sbjct: 268 KSGKEFKVKNIIIATGSTPNIPDNIEVDQ---KSVF---TSDTAVKLEGLQN-----YMG 316

Query: 167 VVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYE---------GYYANK 217
           +VG G IGLE          +V      P  +P L  AD+A ++E           + N 
Sbjct: 317 IVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLP-LLDADVAKYFERVFLKSKPVRVHLNT 375

Query: 218 GIKIIKGT-----VAVGFTTNADGEVKEVK--LKDGRTLEADIVVVGVGGRPL---ISLF 267
            I+ ++       V +G +    GE    K  + D +    D  +V  G +P    + L 
Sbjct: 376 LIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNLGLD 435

Query: 268 KGQVAENKGGIETDDFFKTSADD------VYAVGD 296
           K ++   +G +  D+  +   +D      ++ +GD
Sbjct: 436 KLKIQMKRGFVSVDEHLRVLREDQEVYDNIFCIGD 470

Length = 659

>gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK; Provisional

 Score = 39.6 bits (93), Expect = 0.003
 Identities = 60/232 (25%), Positives = 98/232 (42%), Gaps = 54/232 (23%)

Query: 135 GADAKNIFYLREIDDADKLVEAI----KAKKNGKAV-------VVGGGYIGLELS-AALK 182
           GAD      L        +++A+    + K  G A+       VVGGG   ++ + AAL+
Sbjct: 632 GADKNGGLKLEG--GNQNVIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALR 689

Query: 183 INNI-DVSMVYPEPWCMPRLFTADIAAFYEGYYA--NKGIKIIKGTVAVGFTTNADGEV- 238
           +  +  V++VY       R    ++ A+ E Y      G++  +      F  +ADG + 
Sbjct: 690 VPGVEKVTVVY-------RRTKQEMPAWREEYEEALEDGVEFKELLNPESF--DADGTLT 740

Query: 239 -KEVKLKD----GR----------TLEADIVVVGVGGRPLISLFK--GQVAENKGGIETD 281
            + +KL +    GR          TLEAD V+  +G +    L K  G   + KG    D
Sbjct: 741 CRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTELLKANGIPLDKKGWPVVD 800

Query: 282 DFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEG 333
              +TS  +VY +GDV   P  +      V  +  AR++A      I++ EG
Sbjct: 801 ANGETSLTNVYMIGDVQRGPSTI------VAAIADARRAA----DAILSREG 842

Length = 1019

>gnl|CDD|185416 PTZ00052, PTZ00052, thioredoxin reductase; Provisional

 Score = 39.4 bits (92), Expect = 0.003
 Identities = 39/144 (27%), Positives = 60/144 (41%), Gaps = 11/144 (7%)

Query: 160 KKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGI 219
           K  GK ++VG  YIGLE +  L     DV++         R F    +     Y   +G 
Sbjct: 180 KDPGKTLIVGASYIGLETAGFLNELGFDVTVAVRS--IPLRGFDRQCSEKVVEYMKEQGT 237

Query: 220 KIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFK-----GQVAEN 274
             ++G V +      D ++K V   DG T   D V+   G +P I           V ++
Sbjct: 238 LFLEGVVPINI-EKMDDKIK-VLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKS 295

Query: 275 KGGIETDDFFKTSADDVYAVGDVA 298
              I  +D   T+  +++AVGDV 
Sbjct: 296 NKIIAPND--CTNIPNIFAVGDVV 317

Length = 499

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	433
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	100.0
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	100.0
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	100.0
PRK13512	438	coenzyme A disulfide reductase; Provisional	100.0
PRK09564	444	coenzyme A disulfide reductase; Reviewed	100.0
PRK06370	463	mercuric reductase; Validated	100.0
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	100.0
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	100.0
PRK06116	450	glutathione reductase; Validated	100.0
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	100.0
PLN02507	499	glutathione reductase	100.0
PRK14694	468	putative mercuric reductase; Provisional	100.0
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	100.0
PTZ00058	561	glutathione reductase; Provisional	100.0
PRK14989	847	nitrite reductase subunit NirD; Provisional	100.0
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	100.0
PRK07846	451	mycothione reductase; Reviewed	100.0
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	100.0
PRK07845	466	flavoprotein disulfide reductase; Reviewed	100.0
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	100.0
PLN02546	558	glutathione reductase	100.0
TIGR02053	463	MerA mercuric reductase. This model represents the	100.0
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	100.0
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	100.0
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	100.0
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	100.0
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	100.0
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	100.0
PRK13748	561	putative mercuric reductase; Provisional	100.0
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	100.0
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	100.0
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	100.0
PTZ00153	659	lipoamide dehydrogenase; Provisional	100.0
PRK14727	479	putative mercuric reductase; Provisional	100.0
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	100.0
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	100.0
PTZ00052	499	thioredoxin reductase; Provisional	100.0
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	100.0
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	100.0
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	100.0
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	100.0
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	100.0
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	100.0
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	100.0
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	100.0
PRK10262	321	thioredoxin reductase; Provisional	100.0
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	100.0
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	100.0
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	100.0
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	100.0
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	100.0
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	100.0
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	100.0
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	100.0
PRK12831	464	putative oxidoreductase; Provisional	100.0
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	100.0
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	100.0
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	100.0
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	100.0
PRK12779	944	putative bifunctional glutamate synthase subunit b	100.0
PRK12770	352	putative glutamate synthase subunit beta; Provisio	100.0
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	100.0
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	100.0
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	99.97
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	99.97
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	99.97
PRK12814	652	putative NADPH-dependent glutamate synthase small	99.97
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	99.97
PRK13984	604	putative oxidoreductase; Provisional	99.97
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	99.97
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	99.97
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	99.96
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	99.96
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	99.96
PLN02852	491	ferredoxin-NADP+ reductase	99.96
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	99.95
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	99.94
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	99.9
KOG2755	334	consensus Oxidoreductase [General function predict	99.88
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	99.87
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	99.86
PRK06567	1028	putative bifunctional glutamate synthase subunit b	99.85
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	99.82
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	99.79
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	99.78
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	99.78
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	99.77
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	99.75
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	99.74
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	99.68
PTZ00188	506	adrenodoxin reductase; Provisional	99.65
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	99.64
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	99.57
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	99.52
COG2081	408	Predicted flavoproteins [General function predicti	99.45
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	99.37
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	99.33
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	99.22
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	99.21
PLN02463	447	lycopene beta cyclase	99.16
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	99.14
COG0579	429	Predicted dehydrogenase [General function predicti	99.12
PRK08401	466	L-aspartate oxidase; Provisional	99.1
PRK07804	541	L-aspartate oxidase; Provisional	99.09
PRK12842	574	putative succinate dehydrogenase; Reviewed	99.06
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	99.06
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.04
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	99.03
PRK09897	534	hypothetical protein; Provisional	99.02
PRK08275	554	putative oxidoreductase; Provisional	99.02
PRK11728	393	hydroxyglutarate oxidase; Provisional	99.01
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.99
PRK10015	429	oxidoreductase; Provisional	98.99
PRK10157	428	putative oxidoreductase FixC; Provisional	98.98
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	98.97
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	98.97
PRK08071	510	L-aspartate oxidase; Provisional	98.96
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	98.96
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	98.95
PRK09077	536	L-aspartate oxidase; Provisional	98.88
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	98.88
PRK07512	513	L-aspartate oxidase; Provisional	98.87
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	98.87
PRK06847	375	hypothetical protein; Provisional	98.87
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	98.86
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	98.85
PRK07190	487	hypothetical protein; Provisional	98.84
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	98.82
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	98.82
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	98.81
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	98.81
PRK06834	488	hypothetical protein; Provisional	98.8
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	98.8
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	98.8
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.78
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	98.78
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	98.78
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	98.78
PRK07395	553	L-aspartate oxidase; Provisional	98.78
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	98.77
PRK08274	466	tricarballylate dehydrogenase; Validated	98.77
PRK13977	576	myosin-cross-reactive antigen; Provisional	98.76
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	98.76
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	98.74
PRK09126	392	hypothetical protein; Provisional	98.74
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.74
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	98.74
PRK06184	502	hypothetical protein; Provisional	98.74
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	98.73
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	98.72
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	98.7
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	98.7
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	98.69
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	98.68
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.67
PTZ00383	497	malate:quinone oxidoreductase; Provisional	98.67
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	98.67
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.66
PRK07045	388	putative monooxygenase; Reviewed	98.66
PRK07236	386	hypothetical protein; Provisional	98.65
TIGR00275	400	flavoprotein, HI0933 family. The model when search	98.65
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	98.64
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.64
PLN02697	529	lycopene epsilon cyclase	98.63
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.63
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	98.63
PRK06185	407	hypothetical protein; Provisional	98.62
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	98.62
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	98.61
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.61
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	98.61
PLN02612	567	phytoene desaturase	98.61
PRK08244	493	hypothetical protein; Provisional	98.6
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	98.6
PRK07233	434	hypothetical protein; Provisional	98.59
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	98.59
PF02852	110	Pyr_redox_dim: Pyridine nucleotide-disulphide oxid	98.58
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	98.58
PRK08013	400	oxidoreductase; Provisional	98.56
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.55
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	98.54
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	98.53
PRK08163	396	salicylate hydroxylase; Provisional	98.53
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	98.53
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	98.53
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	98.52
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	98.52
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	98.52
PRK11445	351	putative oxidoreductase; Provisional	98.51
PRK06126	545	hypothetical protein; Provisional	98.51
PRK07208	479	hypothetical protein; Provisional	98.51
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	98.5
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.5
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.5
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	98.5
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	98.5
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	98.49
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.49
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	98.47
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	98.47
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	98.47
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	98.47
PRK08132	547	FAD-dependent oxidoreductase; Provisional	98.46
PRK07121	492	hypothetical protein; Validated	98.46
PRK11883	451	protoporphyrinogen oxidase; Reviewed	98.45
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	98.45
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	98.44
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	98.44
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	98.43
PRK06753	373	hypothetical protein; Provisional	98.43
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	98.43
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	98.43
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	98.43
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	98.43
PRK07588	391	hypothetical protein; Provisional	98.43
PRK06847	375	hypothetical protein; Provisional	98.43
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	98.42
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.42
PLN02661	357	Putative thiazole synthesis	98.42
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	98.42
PRK05257	494	malate:quinone oxidoreductase; Validated	98.41
PRK06996	398	hypothetical protein; Provisional	98.41
PRK06175	433	L-aspartate oxidase; Provisional	98.4
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	98.4
PRK05868	372	hypothetical protein; Validated	98.4
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	98.4
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	98.4
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	98.39
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	98.39
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	98.38
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	98.36
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	98.35
PRK10262	321	thioredoxin reductase; Provisional	98.32
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	98.31
COG2907	447	Predicted NAD/FAD-binding protein [General functio	98.31
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	98.31
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	98.31
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	98.31
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	98.3
PRK12416	463	protoporphyrinogen oxidase; Provisional	98.3
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	98.3
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	98.3
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	98.3
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	98.29
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.29
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	98.28
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.28
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	98.27
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	98.27
PRK06116	450	glutathione reductase; Validated	98.27
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	98.27
PRK13512	438	coenzyme A disulfide reductase; Provisional	98.27
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	98.27
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	98.27
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	98.26
PLN02464	627	glycerol-3-phosphate dehydrogenase	98.26
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.26
PRK14694	468	putative mercuric reductase; Provisional	98.25
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.25
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	98.25
PRK13339	497	malate:quinone oxidoreductase; Reviewed	98.24
PRK14989	847	nitrite reductase subunit NirD; Provisional	98.23
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.23
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	98.23
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	98.23
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	98.22
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.22
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	98.22
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	98.22
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	98.21
PRK07236	386	hypothetical protein; Provisional	98.21
TIGR02053	463	MerA mercuric reductase. This model represents the	98.2
PRK06370	463	mercuric reductase; Validated	98.19
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	98.19
PLN02661	357	Putative thiazole synthesis	98.19
PLN02487	569	zeta-carotene desaturase	98.19
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	98.19
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.19
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.18
PRK07846	451	mycothione reductase; Reviewed	98.18
PLN02576	496	protoporphyrinogen oxidase	98.18
PRK12770	352	putative glutamate synthase subunit beta; Provisio	98.17
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	98.16
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.16
PRK12779	944	putative bifunctional glutamate synthase subunit b	98.16
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	98.16
PLN02463	447	lycopene beta cyclase	98.15
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	98.15
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	98.14
PF14759	85	Reductase_C: Reductase C-terminal; PDB: 3FG2_P 3LX	98.13
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.13
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.13
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	98.13
PRK06475	400	salicylate hydroxylase; Provisional	98.12
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	98.12
PRK07845	466	flavoprotein disulfide reductase; Reviewed	98.11
PRK07538	413	hypothetical protein; Provisional	98.11
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	98.11
PRK08294	634	phenol 2-monooxygenase; Provisional	98.1
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	98.1
PLN02507	499	glutathione reductase	98.1
PRK06834	488	hypothetical protein; Provisional	98.1
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.1
PRK08244	493	hypothetical protein; Provisional	98.09
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	98.09
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	98.09
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	98.08
PRK07045	388	putative monooxygenase; Reviewed	98.08
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.07
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	98.07
PLN02815	594	L-aspartate oxidase	98.06
PRK08163	396	salicylate hydroxylase; Provisional	98.06
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	98.05
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	98.05
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	98.05
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	98.04
PTZ00052	499	thioredoxin reductase; Provisional	98.04
PRK12839	572	hypothetical protein; Provisional	98.04
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	98.04
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	98.02
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	98.02
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.02
PRK13748	561	putative mercuric reductase; Provisional	98.01
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	98.0
PRK14727	479	putative mercuric reductase; Provisional	98.0
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	98.0
PRK12831	464	putative oxidoreductase; Provisional	97.98
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	97.98
PRK06184	502	hypothetical protein; Provisional	97.98
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	97.97
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	97.97
PRK10157	428	putative oxidoreductase FixC; Provisional	97.97
PRK07588	391	hypothetical protein; Provisional	97.97
PRK05868	372	hypothetical protein; Validated	97.96
PLN02852	491	ferredoxin-NADP+ reductase	97.96
PTZ00058	561	glutathione reductase; Provisional	97.96
PRK09126	392	hypothetical protein; Provisional	97.94
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	97.93
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	97.91
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	97.91
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	97.91
PLN02697	529	lycopene epsilon cyclase	97.91
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	97.91
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	97.91
PLN02568	539	polyamine oxidase	97.9
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	97.9
PRK07190	487	hypothetical protein; Provisional	97.9
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	97.89
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	97.89
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	97.87
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.85
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	97.85
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	97.85
PRK06753	373	hypothetical protein; Provisional	97.85
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.83
PRK08132	547	FAD-dependent oxidoreductase; Provisional	97.83
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	97.83
PRK08013	400	oxidoreductase; Provisional	97.82
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.82
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	97.82
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	97.82
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	97.81
PRK10015	429	oxidoreductase; Provisional	97.8
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	97.8
PTZ00188	506	adrenodoxin reductase; Provisional	97.78
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	97.78
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	97.78
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	97.77
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	97.75
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	97.75
PRK06475	400	salicylate hydroxylase; Provisional	97.75
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	97.75
PTZ00153	659	lipoamide dehydrogenase; Provisional	97.74
PRK12814	652	putative NADPH-dependent glutamate synthase small	97.73
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	97.73
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	97.73
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	97.72
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	97.71
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	97.71
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	97.7
PLN02546	558	glutathione reductase	97.69
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	97.68
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.67
PRK06185	407	hypothetical protein; Provisional	97.67
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	97.66
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	97.65
PLN02985	514	squalene monooxygenase	97.62
PRK09897	534	hypothetical protein; Provisional	97.62
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	97.62
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	97.62
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.58
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	97.58
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	97.57
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	97.56
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	97.56
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	97.55
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	97.53
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	97.53
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	97.52
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	97.52
PRK02106	560	choline dehydrogenase; Validated	97.52
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	97.52
PRK06996	398	hypothetical protein; Provisional	97.52
PTZ00367	567	squalene epoxidase; Provisional	97.5
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	97.49
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	97.48
PLN02268	435	probable polyamine oxidase	97.46
PRK13984	604	putative oxidoreductase; Provisional	97.43
PRK11445	351	putative oxidoreductase; Provisional	97.43
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	97.42
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	97.42
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	97.39
PRK07538	413	hypothetical protein; Provisional	97.38
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	97.37
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	97.37
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	97.36
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	97.36
PRK06126	545	hypothetical protein; Provisional	97.34
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	97.34
COG3349	485	Uncharacterized conserved protein [Function unknow	97.33
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	97.32
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	97.3
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	97.3
PRK06567	1028	putative bifunctional glutamate synthase subunit b	97.3
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	97.27
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	97.25
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	97.21
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	97.2
PLN02676	487	polyamine oxidase	97.2
COG2081	408	Predicted flavoproteins [General function predicti	97.18
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	97.17
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	97.17
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.09
PRK08401	466	L-aspartate oxidase; Provisional	97.09
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	97.07
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	97.07
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	97.04
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	97.04
PLN02985	514	squalene monooxygenase	97.02
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	97.01
PLN02529	738	lysine-specific histone demethylase 1	97.01
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	97.0
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	96.99
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	96.98
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	96.97
KOG2960	328	consensus Protein involved in thiamine biosynthesi	96.94
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	96.9
PLN02328	808	lysine-specific histone demethylase 1 homolog	96.89
COG3573	552	Predicted oxidoreductase [General function predict	96.88
PRK07804	541	L-aspartate oxidase; Provisional	96.88
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	96.86
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	96.81
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	96.81
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	96.78
PRK08275	554	putative oxidoreductase; Provisional	96.77
PRK08294	634	phenol 2-monooxygenase; Provisional	96.75
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	96.7
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	96.68
PRK06175	433	L-aspartate oxidase; Provisional	96.61
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	96.6
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	96.57
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	96.55
PF14721	133	AIF_C: Apoptosis-inducing factor, mitochondrion-as	96.55
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	96.55
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	96.53
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	96.42
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.41
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	96.38
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	96.35
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.35
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	96.32
PLN03000	881	amine oxidase	96.31
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	96.31
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.22
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	96.22
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	96.18
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	96.18
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	96.16
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	96.14
PLN02785	587	Protein HOTHEAD	96.13
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	96.12
KOG2853	509	consensus Possible oxidoreductase [General functio	96.11
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	96.11
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	96.08
PLN02976	1713	amine oxidase	96.04
PTZ00367	567	squalene epoxidase; Provisional	95.98
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	95.93
KOG3923	342	consensus D-aspartate oxidase [Amino acid transpor	95.9
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	95.87
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	95.85
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	95.81
PRK08071	510	L-aspartate oxidase; Provisional	95.8
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	95.76
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	95.72
PRK07395	553	L-aspartate oxidase; Provisional	95.67
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	95.51
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	95.5
KOG2755	334	consensus Oxidoreductase [General function predict	95.48
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	95.4
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	95.38

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=100.00  E-value=1.4e-54  Score=415.53  Aligned_cols=391  Identities=27%  Similarity=0.410  Sum_probs=326.1

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHH
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK   82 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (433)
                      +..+|||||||+||++||..|++.+. ..+|+|++++ ..+|.++.+++.++........           .....+++.
T Consensus         2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~-~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~-----------~~~~~~~~~   69 (396)
T PRK09754          2 KEKTIIIVGGGQAAAMAAASLRQQGF-TGELHLFSDERHLPYERPPLSKSMLLEDSPQLQ-----------QVLPANWWQ   69 (396)
T ss_pred             CcCcEEEECChHHHHHHHHHHHhhCC-CCCEEEeCCCCCCCCCCCCCCHHHHCCCCcccc-----------ccCCHHHHH
Confidence            35789999999999999999999885 5679999999 8889998888766543221110           123456778


Q ss_pred             hCCcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCC
Q 013952           83 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKN  162 (433)
Q Consensus        83 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~  162 (433)
                      +.+++++.++.|..++++.+.|.+.++.++.||+||||||+.|+.++   +++....++++++++.++..+.+.+.  .+
T Consensus        70 ~~~i~~~~g~~V~~id~~~~~v~~~~g~~~~yd~LViATGs~~~~~p---~~~~~~~~v~~~~~~~da~~l~~~~~--~~  144 (396)
T PRK09754         70 ENNVHLHSGVTIKTLGRDTRELVLTNGESWHWDQLFIATGAAARPLP---LLDALGERCFTLRHAGDAARLREVLQ--PE  144 (396)
T ss_pred             HCCCEEEcCCEEEEEECCCCEEEECCCCEEEcCEEEEccCCCCCCCC---CCCcCCCCEEecCCHHHHHHHHHHhh--cC
Confidence            89999999989999999999999999989999999999999997766   34445578999999999988887765  47


Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEE
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVK  242 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~  242 (433)
                      ++++|||+|++|+|+|..|.+.|.+|+++++.+.+++..+++.+.+.+.+.+++.||++++++.++++..  ++. ..+.
T Consensus       145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~--~~~-~~v~  221 (396)
T PRK09754        145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVD--GEK-VELT  221 (396)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEeCCeeEEEEc--CCE-EEEE
Confidence            8999999999999999999999999999999998887667889999999999999999999999999975  332 4577


Q ss_pred             eCCCcEEECCEEEEcccCccChhhhh-cccccCCCcEEeCCCCCCCCCCeEEcCccccccccccCcccccccHHHHHHHH
Q 013952          243 LKDGRTLEADIVVVGVGGRPLISLFK-GQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSA  321 (433)
Q Consensus       243 ~~~g~~i~~d~vi~a~G~~p~~~~~~-~~~~~~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g  321 (433)
                      +.+|+++++|.+|+++|.+||+.++. .++.. +++|.||++|||+.|||||+|||+..+.. .+...+.++|..|..||
T Consensus       222 l~~g~~i~aD~Vv~a~G~~pn~~l~~~~gl~~-~~gi~vd~~~~ts~~~IyA~GD~a~~~~~-~g~~~~~~~~~~A~~qg  299 (396)
T PRK09754        222 LQSGETLQADVVIYGIGISANDQLAREANLDT-ANGIVIDEACRTCDPAIFAGGDVAITRLD-NGALHRCESWENANNQA  299 (396)
T ss_pred             ECCCCEEECCEEEECCCCChhhHHHHhcCCCc-CCCEEECCCCccCCCCEEEccceEeeeCC-CCCEEEECcHHHHHHHH
Confidence            88898999999999999999998764 34544 46799999999999999999999987766 67666678999999999


Q ss_pred             HHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCCCcE-EEEcCCCccccCCcEEEEEEeCCEEEEEEEecCCh
Q 013952          322 EQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDT-VLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTP  400 (433)
Q Consensus       322 ~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~g~~~  400 (433)
                      ++||+||++..     .+|..+|++|+.++++.++.+|....+. +..++..    ...|..++.++|+|+|+.++| ..
T Consensus       300 ~~aa~ni~g~~-----~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~g~~~~~-~~  369 (396)
T PRK09754        300 QIAAAAMLGLP-----LPLLPPPWFWSDQYSDNLQFIGDMRGDDWLCRGNPE----TQKAIWFNLQNGVLIGAVTLN-QG  369 (396)
T ss_pred             HHHHHHhcCCC-----CCCCCCCceEEEeCCccEEEeeCCCCCEEEEecCCC----CceEEEEEeeCCEEEEEEEEC-CH
Confidence            99999999753     5678899999999999999999765544 3344422    344666677899999999998 56


Q ss_pred             HHHHHHHHHHHcCCCCCChhhhcccCC
Q 013952          401 EENKAIAKVARVQPSVESLDVLKNEGL  427 (433)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (433)
                      .+...+..+|+.+.++ +.+.|.++.+
T Consensus       370 ~~~~~~~~~~~~~~~~-~~~~~~~~~~  395 (396)
T PRK09754        370 REIRPIRKWIQSGKTF-DAKLLIDENI  395 (396)
T ss_pred             HHHHHHHHHHHCCCCC-CHHHhcCccc
Confidence            7888889999999887 6777877754

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=100.00  E-value=6.2e-55  Score=413.14  Aligned_cols=392  Identities=23%  Similarity=0.284  Sum_probs=303.1

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-C----CCCCCCCccccccCCCCCC----CC---CCcccccC-
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-V----APYERPALSKAYLFPEGTA----RL---PGFHVCVG-   70 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~----~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~-   70 (433)
                      .+||+||||+||+|..||.++++.|.+   |+++|+. .    |....|.++|.++......    +.   .++..... 
T Consensus         3 ~~yDvvVIG~GpaG~~aA~raa~~G~k---valvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~   79 (454)
T COG1249           3 KEYDVVVIGAGPAGYVAAIRAAQLGLK---VALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPK   79 (454)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCC---EEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCC
Confidence            479999999999999999999999987   9999998 2    5556677777776554321    11   11111100 


Q ss_pred             --------------CCCCCCCHhHHHhCCcEEEeCceEEEEECCCCEEEeCC--CcEEecceEEEccCCCccccCCCCCC
Q 013952           71 --------------SGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSAT--GLIFKYQILVIATGSTVLRLTDFGVE  134 (433)
Q Consensus        71 --------------~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~--~~~~~~d~lvlAtG~~~~~~~~~~~~  134 (433)
                                    .........+++..+++++.++..+.   +.++|.+.+  .++++++++|||||++|+.|+.   +
T Consensus        80 id~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~---~~~~v~V~~~~~~~~~a~~iiIATGS~p~~~~~---~  153 (454)
T COG1249          80 IDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFV---DPHTVEVTGEDKETITADNIIIATGSRPRIPPG---P  153 (454)
T ss_pred             cCHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEEC---CCCEEEEcCCCceEEEeCEEEEcCCCCCcCCCC---C
Confidence                          00112233345567999999855443   367777665  4789999999999999999984   5


Q ss_pred             CCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHH
Q 013952          135 GADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYY  214 (433)
Q Consensus       135 g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l  214 (433)
                      +.+...+++.++......        .|++++|||+|++|+|+|..++++|.+||++++.+++++. +|+++++.+.+.|
T Consensus       154 ~~~~~~~~~s~~~l~~~~--------lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~-~D~ei~~~~~~~l  224 (454)
T COG1249         154 GIDGARILDSSDALFLLE--------LPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPG-EDPEISKELTKQL  224 (454)
T ss_pred             CCCCCeEEechhhccccc--------CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCc-CCHHHHHHHHHHH
Confidence            555455665554332222        4899999999999999999999999999999999999997 8999999999999


Q ss_pred             HhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCc--EEECCEEEEcccCccChhhh---hccccc-CCCcEEeCCCCCCCC
Q 013952          215 ANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGR--TLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSA  288 (433)
Q Consensus       215 ~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~--~i~~d~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~  288 (433)
                      ++.|+++++++.+++++..+++  ..+.+.+|+  ++++|.+++|+|++||++-+   +.++.. ++|+|.||++++|++
T Consensus       225 ~~~gv~i~~~~~v~~~~~~~~~--v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD~~~~Tnv  302 (454)
T COG1249         225 EKGGVKILLNTKVTAVEKKDDG--VLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDDQMTTNV  302 (454)
T ss_pred             HhCCeEEEccceEEEEEecCCe--EEEEEecCCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeCCccccCC
Confidence            9999999999999999874444  577777775  79999999999999999843   567887 458999998888999


Q ss_pred             CCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCCCc----
Q 013952          289 DDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGD----  364 (433)
Q Consensus       289 ~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~----  364 (433)
                      |||||+|||++.++          +...|..||++|++||++.  .....+|..+|+++++.|+++++  |+++.+    
T Consensus       303 p~IyA~GDV~~~~~----------Lah~A~~eg~iaa~~i~g~--~~~~~d~~~iP~~ift~Peia~V--Glte~ea~~~  368 (454)
T COG1249         303 PGIYAIGDVIGGPM----------LAHVAMAEGRIAAENIAGG--KRTPIDYRLIPSVVFTDPEIASV--GLTEEEAKEA  368 (454)
T ss_pred             CCEEEeeccCCCcc----------cHhHHHHHHHHHHHHHhCC--CCCcCcccCCCEEEECCCcceee--eCCHHHHHhc
Confidence            99999999998874          4566889999999999982  22347899999999999999888  666422    


Q ss_pred             --EEEEcCCCcc--------ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhcccCCCc
Q 013952          365 --TVLFGDNDLA--------SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSF  429 (433)
Q Consensus       365 --~~~~~~~~~~--------~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (433)
                        .+..+..+..        .++.+|.|+++  ++++|||+|++|+.++|+ +.++.+|+.+++.+|+....-+-+++
T Consensus       369 g~~~~~~~~~f~~~~ra~~~~~~~G~~Klv~d~~t~~IlGahivg~~A~ElI~~~~~a~~~g~t~~~~~~~i~~HPT~  446 (454)
T COG1249         369 GIDYKVGKFPFAANGRAITMGETDGFVKLVVDKETGRILGAHIVGPGASELINEIALAIEMGATAEDLALTIHAHPTL  446 (454)
T ss_pred             CCceEEEEeecccchhHHhccCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcCCCCCCCh
Confidence              2333322222        34578999888  579999999999999996 99999999999888666544444443

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=100.00  E-value=2.7e-52  Score=380.39  Aligned_cols=400  Identities=53%  Similarity=0.895  Sum_probs=359.2

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHh
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   83 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (433)
                      ...++|||+|++|..|+.++++.+. ..+++++.++ ..||.++.+++.+.             ..+.....+..+|+++
T Consensus        74 ar~fvivGgG~~g~vaie~~r~~g~-~~ri~l~~~~~~~pydr~~Ls~~~~-------------~~~~~~a~r~~e~Yke  139 (478)
T KOG1336|consen   74 ARHFVIVGGGPGGAVAIETLRQVGF-TERIALVKREYLLPYDRARLSKFLL-------------TVGEGLAKRTPEFYKE  139 (478)
T ss_pred             cceEEEEcCCchhhhhHhhHHhhCC-CcceEEEeccccCcccchhccccee-------------eccccccccChhhHhh
Confidence            4689999999999999999999986 5678998878 88888877665443             3344446778889999


Q ss_pred             CCcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCC
Q 013952           84 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNG  163 (433)
Q Consensus        84 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~  163 (433)
                      .++++++++.|+.+|...++|.+.+|+++.|++|+||||+.++.++   +||.+.++++++++.+++..+...+..  ..
T Consensus       140 ~gIe~~~~t~v~~~D~~~K~l~~~~Ge~~kys~LilATGs~~~~l~---~pG~~~~nv~~ireieda~~l~~~~~~--~~  214 (478)
T KOG1336|consen  140 KGIELILGTSVVKADLASKTLVLGNGETLKYSKLIIATGSSAKTLD---IPGVELKNVFYLREIEDANRLVAAIQL--GG  214 (478)
T ss_pred             cCceEEEcceeEEeeccccEEEeCCCceeecceEEEeecCccccCC---CCCccccceeeeccHHHHHHHHHHhcc--Cc
Confidence            9999999999999999999999999999999999999999999888   578888999999999999988887763  67


Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe
Q 013952          164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL  243 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~  243 (433)
                      +++++|+|++|+|+|..|...+.+||++.+.+..+++.+.+.+.+.+++.++++||++++++.+.+++.+++|++..|.+
T Consensus       215 ~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l  294 (478)
T KOG1336|consen  215 KVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKL  294 (478)
T ss_pred             eEEEECchHHHHHHHHHHHhcCceEEEEccCccchhhhhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEe
Confidence            89999999999999999999999999999999999999999999999999999999999999999999988899999999


Q ss_pred             CCCcEEECCEEEEcccCccChhhhhcccc-cCCCcEEeCCCCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHH
Q 013952          244 KDGRTLEADIVVVGVGGRPLISLFKGQVA-ENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAE  322 (433)
Q Consensus       244 ~~g~~i~~d~vi~a~G~~p~~~~~~~~~~-~~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~  322 (433)
                      .+|++++||+|++.+|.+|++.+++.+.. ..+|+|.||+++||++|||||+||++..|...++..++.+|++.|..+|+
T Consensus       295 ~dg~~l~adlvv~GiG~~p~t~~~~~g~~~~~~G~i~V~~~f~t~~~~VyAiGDva~fp~~~~~~~~~v~H~~~A~~~g~  374 (478)
T KOG1336|consen  295 KDGKTLEADLVVVGIGIKPNTSFLEKGILLDSKGGIKVDEFFQTSVPNVYAIGDVATFPLKGYGEDRRVEHVDHARASGR  374 (478)
T ss_pred             ccCCEeccCeEEEeeccccccccccccceecccCCEeehhceeeccCCcccccceeecccccccccccchHHHHHHHHHH
Confidence            99999999999999999999999975443 37899999999999999999999999999988887777899999999999


Q ss_pred             HHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCCCcEEEEcCCCccccCCcEEEEEEeCCEEEEEEEecCChHH
Q 013952          323 QAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEE  402 (433)
Q Consensus       323 ~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~g~~~~~  402 (433)
                      .+...|.....    ..++++|+||+..++..|...|...++.+.+|+.+    ...|+.+|++ +..+++.+-+....+
T Consensus       375 ~av~ai~~~~~----~~~~~lPyf~t~~f~~~~~~~G~g~~~~v~~G~~e----~~~f~ay~~k-~~~v~a~~~~g~~~~  445 (478)
T KOG1336|consen  375 QAVKAIKMAPQ----DAYDYLPYFYTRFFSLSWRFAGDGVGDVVLFGDLE----PGSFGAYWIK-GDKVGAVAEGGRDEE  445 (478)
T ss_pred             hhhhhhhccCc----ccccccchHHHHHhhhhccccCcCccceeeecccc----cccceeeEee-ccEEEEEeccCCChH
Confidence            88877776543    23889999999999999999998888899999988    4459999999 999999998877777


Q ss_pred             HHHHHHHHHcCCCCCChhhhcccCCCcccc
Q 013952          403 NKAIAKVARVQPSVESLDVLKNEGLSFASK  432 (433)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (433)
                      .+.++.++++|+.+..++.+...+.+|+..
T Consensus       446 ~~~~a~l~~~~~~v~~~~~~~~~~~~~~~~  475 (478)
T KOG1336|consen  446 VSQFAKLARQGPEVTSLKLLSKSGDSFWLT  475 (478)
T ss_pred             HHHHHHHHhcCCcchhhhhccccchhhHHh
Confidence            899999999999999888898888888764

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=100.00  E-value=4.3e-51  Score=395.56  Aligned_cols=389  Identities=19%  Similarity=0.227  Sum_probs=293.6

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCC-HhHHHhC
Q 013952            7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLL-PEWYKEK   84 (433)
Q Consensus         7 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~   84 (433)
                      +|||||||+||++||..|++.+ +..+|+|||++ ...|.+|.+....-  .   ......     ...... ..+.++.
T Consensus         3 ~VVIIGgG~aG~~aA~~l~~~~-~~~~I~li~~~~~~~~~~~~lp~~~~--~---~~~~~~-----~~~~~~~~~~~~~~   71 (438)
T PRK13512          3 KIIVVGAVAGGATCASQIRRLD-KESDIIIFEKDRDMSFANCALPYYIG--E---VVEDRK-----YALAYTPEKFYDRK   71 (438)
T ss_pred             eEEEECCcHHHHHHHHHHHhhC-CCCCEEEEECCCCcccccCCcchhhc--C---ccCCHH-----HcccCCHHHHHHhC
Confidence            7999999999999999999875 35679999999 66666544332110  0   000000     001112 3444668


Q ss_pred             CcEEEeCceEEEEECCCCEEEeCCC---c--EEecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHh
Q 013952           85 GIELILSTEIVRADIASKTLLSATG---L--IFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKA  159 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~~v~~~~~---~--~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~  159 (433)
                      +++++.+++|..||+++++|.+.++   .  +++||+||||||+.|+.|+   ++   ..++++++++.++..+.+.+..
T Consensus        72 ~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~~~---~~---~~~~~~~~~~~~~~~l~~~l~~  145 (438)
T PRK13512         72 QITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSLG---FE---SDITFTLRNLEDTDAIDQFIKA  145 (438)
T ss_pred             CCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCCCCC---CC---CCCeEEecCHHHHHHHHHHHhh
Confidence            9999988899999999999887653   2  4789999999999997655   23   3678888999999888888766


Q ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEE
Q 013952          160 KKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVK  239 (433)
Q Consensus       160 ~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~  239 (433)
                      ..+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.+.+++.||++++++++.+++.      .
T Consensus       146 ~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~-~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~------~  218 (438)
T PRK13512        146 NQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKL-MDADMNQPILDELDKREIPYRLNEEIDAING------N  218 (438)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchh-cCHHHHHHHHHHHHhcCCEEEECCeEEEEeC------C
Confidence            56899999999999999999999999999999999888765 7999999999999999999999999999964      2


Q ss_pred             EEEeCCCcEEECCEEEEcccCccChhhhhc-cccc-CCCcEEeCCCCCCCCCCeEEcCccccccccccCcccccccHHHH
Q 013952          240 EVKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHA  317 (433)
Q Consensus       240 ~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~-~~~~-~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A  317 (433)
                      .+.+.+|+++++|.+++|+|++||+++++. ++.. ++|+|.||+++||+.|||||+|||+..+....+.+...+.+..|
T Consensus       219 ~v~~~~g~~~~~D~vl~a~G~~pn~~~l~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~la~~A  298 (438)
T PRK13512        219 EVTFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDDKGFIPVNDKFETNVPNIYAIGDIITSHYRHVDLPASVPLAWGA  298 (438)
T ss_pred             EEEECCCCEEEeCEEEECcCCCcChHHHHhcCcccCCCCcEEECCCcccCCCCEEEeeeeEEeeeccCCCceecccchHH
Confidence            466778888999999999999999987753 4665 56889999999999999999999997554333333333566778


Q ss_pred             HHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCCCcEE----EEcCC-----Cc--cccCCcEEEEEE-
Q 013952          318 RKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDTV----LFGDN-----DL--ASATHKFGTYWI-  385 (433)
Q Consensus       318 ~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~~~----~~~~~-----~~--~~~~~~~~~~~~-  385 (433)
                      .++|+++|+||.+... .....+..+|.+.+.  +..+..+|+++.+..    .....     ..  ...+.+|.|+++ 
T Consensus       299 ~~~a~~~a~ni~g~~~-~~~~~~~~~~~~~~~--~~~ia~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d  375 (438)
T PRK13512        299 HRAASIVAEQIAGNDT-IEFKGFLGNNIVKFF--DYTFASVGVKPNELKQFDYKMVEVTQGAHANYYPGNSPLHLRVYYD  375 (438)
T ss_pred             HHHHHHHHHHhcCCCc-cccCCcccceEEEEc--CceEEeecCCHHHHccCCcEEEEEecCCcCCCcCCCceEEEEEEEE
Confidence            8999999999986421 111133345554444  444555577753211    11111     10  123467888877 


Q ss_pred             -eCCEEEEEEEecCC-hHH-HHHHHHHHHcCCCCCChhhh
Q 013952          386 -KDGKVVGVFLESGT-PEE-NKAIAKVARVQPSVESLDVL  422 (433)
Q Consensus       386 -~~~~l~G~~~~g~~-~~~-~~~~~~~~~~~~~~~~~~~~  422 (433)
                       ++++|||+|++|++ ++| ++.++.+|+.++|++|+..+
T Consensus       376 ~~~~~ilGa~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~  415 (438)
T PRK13512        376 TSNRKILRAAAVGKEGADKRIDVLSMAMMNQLTVDELTEF  415 (438)
T ss_pred             CCCCeEEEEEEEccccHHHHHHHHHHHHHcCCcHHHHhhc
Confidence             57999999999986 676 59999999999999987765

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=100.00  E-value=1.1e-50  Score=395.82  Aligned_cols=404  Identities=21%  Similarity=0.267  Sum_probs=306.2

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhCC
Q 013952            7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKG   85 (433)
Q Consensus         7 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (433)
                      +|||||||+||+++|.+|++.+. ..+|+|||++ ...|..+.+.. +....  ...+       ........+.+++.+
T Consensus         2 ~vvIIGgG~aGl~aA~~l~~~~~-~~~Vtli~~~~~~~~~~~~~~~-~~~~~--~~~~-------~~~~~~~~~~~~~~g   70 (444)
T PRK09564          2 KIIIIGGTAAGMSAAAKAKRLNK-ELEITVYEKTDIVSFGACGLPY-FVGGF--FDDP-------NTMIARTPEEFIKSG   70 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHHCC-CCcEEEEECCCcceeecCCCce-Eeccc--cCCH-------HHhhcCCHHHHHHCC
Confidence            79999999999999999999763 4569999999 44444332221 00000  0000       011234566778889


Q ss_pred             cEEEeCceEEEEECCCCEEEeCC---CcEEe--cceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhc
Q 013952           86 IELILSTEIVRADIASKTLLSAT---GLIFK--YQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAK  160 (433)
Q Consensus        86 v~~~~~~~v~~i~~~~~~v~~~~---~~~~~--~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~  160 (433)
                      ++++.+++|+.|+++++.+.+.+   +.++.  ||+||+|||++|..|+   ++|.+.++++++++..++.++.+.+.+.
T Consensus        71 v~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~~---i~g~~~~~v~~~~~~~~~~~l~~~l~~~  147 (444)
T PRK09564         71 IDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPIIPP---IKNINLENVYTLKSMEDGLALKELLKDE  147 (444)
T ss_pred             CeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCCCCC---CCCcCCCCEEEECCHHHHHHHHHHHhhc
Confidence            99998889999999999887754   55666  9999999999998776   5777667899999998888888888765


Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEE
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE  240 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~  240 (433)
                      .+++++|+|+|++|+|+|..|.+.|.+|+++++.+.+++..+++++.+.+.+.+++.||++++++++.++..  ++....
T Consensus       148 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~--~~~~~~  225 (444)
T PRK09564        148 EIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIG--EDKVEG  225 (444)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEEcCCEEEEEec--CCcEEE
Confidence            689999999999999999999999999999999888877557999999999999999999999999999965  455555


Q ss_pred             EEeCCCcEEECCEEEEcccCccChhhhh-ccccc-CCCcEEeCCCCCCCCCCeEEcCccccccccccCcccccccHHHHH
Q 013952          241 VKLKDGRTLEADIVVVGVGGRPLISLFK-GQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHAR  318 (433)
Q Consensus       241 v~~~~g~~i~~d~vi~a~G~~p~~~~~~-~~~~~-~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~  318 (433)
                      +.+.++ ++++|.+++|+|++|+.++++ .++.. ++|+|.||+++||+.|||||+|||+..+....+.+...+++..|.
T Consensus       226 v~~~~~-~i~~d~vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~  304 (444)
T PRK09564        226 VVTDKG-EYEADVVIVATGVKPNTEFLEDTGLKTLKNGAIIVDEYGETSIENIYAAGDCATIYNIVSNKNVYVPLATTAN  304 (444)
T ss_pred             EEeCCC-EEEcCEEEECcCCCcCHHHHHhcCccccCCCCEEECCCcccCCCCEEEeeeEEEEEeccCCCeeeccchHHHH
Confidence            655544 799999999999999988775 45665 568899999999999999999999998766555544557889999


Q ss_pred             HHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCCCcE------EEEcC---CCc----cccCCcEEEEEE
Q 013952          319 KSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDT------VLFGD---NDL----ASATHKFGTYWI  385 (433)
Q Consensus       319 ~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~~------~~~~~---~~~----~~~~~~~~~~~~  385 (433)
                      +||+++|+||.+....   .+....+ ....+++..+..+|.++.+.      +....   ...    .....+|.|+++
T Consensus       305 ~qg~~~a~ni~g~~~~---~~~~~~~-~~~~~~~~~~a~vG~t~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~klv~  380 (444)
T PRK09564        305 KLGRMVGENLAGRHVS---FKGTLGS-ACIKVLDLEAARTGLTEEEAKKLGIDYKTVFIKDKNHTNYYPGQEDLYVKLIY  380 (444)
T ss_pred             HHHHHHHHHhcCCCCC---CCCcccc-eEEEECCEEEEEecCCHHHHHHCCCCeEEEEEecCCCCCcCCCCceEEEEEEE
Confidence            9999999999975321   2222222 22234556666668775311      11111   110    123467888887


Q ss_pred             --eCCEEEEEEEecCC-hHH-HHHHHHHHHcCCCCCChhhhcccC-CCccc
Q 013952          386 --KDGKVVGVFLESGT-PEE-NKAIAKVARVQPSVESLDVLKNEG-LSFAS  431 (433)
Q Consensus       386 --~~~~l~G~~~~g~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  431 (433)
                        ++++|+|+|++|+. +.+ ++.++.+|++++|++|+..+..+. ++|++
T Consensus       381 ~~~~~~ilG~~~~g~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~p~~~~  431 (444)
T PRK09564        381 EADTKVILGGQIIGKKGAVLRIDALAVAIYAKLTTQELGMMDFCYAPPFAR  431 (444)
T ss_pred             ECCCCeEEeEEEEcCccHHHHHHHHHHHHHCCCCHHHHhhcccccCCCCCC
Confidence              68999999999986 666 599999999999999776555444 44443

>PRK06370 mercuric reductase; Validated

Probab=100.00  E-value=5.6e-52  Score=405.61  Aligned_cols=398  Identities=19%  Similarity=0.269  Sum_probs=290.3

Q ss_pred             CCCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC----CCCCCCCCccccccCCCCC------CCCCCcccc--
Q 013952            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE----VAPYERPALSKAYLFPEGT------ARLPGFHVC--   68 (433)
Q Consensus         1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~----~~~~~~~~~~~~~~~~~~~------~~~~~~~~~--   68 (433)
                      |||.+|||+||||||||++||.+|+++|++   |+|+|+.    .+.+..|..++.++.....      ....++...  
T Consensus         1 ~~~~~~DvvVIG~GpaG~~aA~~aa~~G~~---v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~   77 (463)
T PRK06370          1 TPAQRYDAIVIGAGQAGPPLAARAAGLGMK---VALIERGLLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGP   77 (463)
T ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCe---EEEEecCccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCcc
Confidence            788889999999999999999999999987   9999987    2334444455443321100      000111100  


Q ss_pred             cCCC--------------CCCCCHhHHHhC-CcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCCC
Q 013952           69 VGSG--------------GERLLPEWYKEK-GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGV  133 (433)
Q Consensus        69 ~~~~--------------~~~~~~~~~~~~-~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~  133 (433)
                      ...+              .......++++. +++++.++.+.   .+.++|.+ ++.+++||+||||||++|+.|+   +
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~---~~~~~v~v-~~~~~~~d~lViATGs~p~~p~---i  150 (463)
T PRK06370         78 VSVDFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARF---ESPNTVRV-GGETLRAKRIFINTGARAAIPP---I  150 (463)
T ss_pred             CccCHHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEE---ccCCEEEE-CcEEEEeCEEEEcCCCCCCCCC---C
Confidence            0000              011233455565 99999886543   34667766 4567999999999999998887   5


Q ss_pred             CCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHH
Q 013952          134 EGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGY  213 (433)
Q Consensus       134 ~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~  213 (433)
                      ||.+...+++..+..+..        ..+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.+.
T Consensus       151 ~G~~~~~~~~~~~~~~~~--------~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~-~~~~~~~~l~~~  221 (463)
T PRK06370        151 PGLDEVGYLTNETIFSLD--------ELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR-EDEDVAAAVREI  221 (463)
T ss_pred             CCCCcCceEcchHhhCcc--------ccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc-cCHHHHHHHHHH
Confidence            776655666544332211        14789999999999999999999999999999999998886 789999999999


Q ss_pred             HHhcCcEEEcCCeEEEEEecCCCcEEEEEeC-CCcEEECCEEEEcccCccChhhh---hccccc-CCCcEEeCCCCCCCC
Q 013952          214 YANKGIKIIKGTVAVGFTTNADGEVKEVKLK-DGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSA  288 (433)
Q Consensus       214 l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~-~g~~i~~d~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~  288 (433)
                      +++.||++++++++.+++..+++....+... ++.++++|.||+|+|++|+++.+   +.++.. .+|+|.||++|||+.
T Consensus       222 l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~l~t~~  301 (463)
T PRK06370        222 LEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDDQLRTTN  301 (463)
T ss_pred             HHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeECcCCcCCC
Confidence            9999999999999999987333322233332 34579999999999999999832   345655 568899999999999


Q ss_pred             CCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCC------
Q 013952          289 DDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV------  362 (433)
Q Consensus       289 ~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~------  362 (433)
                      |+|||+|||++.+          .....|..||++||+||++...  ....+..+|++.+..++++.+  |+++      
T Consensus       302 ~~IyAiGD~~~~~----------~~~~~A~~~g~~aa~ni~~~~~--~~~~~~~~p~~~~~~p~ia~v--G~te~~a~~~  367 (463)
T PRK06370        302 PGIYAAGDCNGRG----------AFTHTAYNDARIVAANLLDGGR--RKVSDRIVPYATYTDPPLARV--GMTEAEARKS  367 (463)
T ss_pred             CCEEEeeecCCCc----------ccHHHHHHHHHHHHHHHhCCCC--CCcccccCCeEEEcCCCcEee--eCCHHHHHHc
Confidence            9999999998765          4567789999999999987522  125566788877666655544  6664      


Q ss_pred             CcEEEEcCCCcc--------ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhcccCCCccc
Q 013952          363 GDTVLFGDNDLA--------SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFAS  431 (433)
Q Consensus       363 ~~~~~~~~~~~~--------~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (433)
                      +..+..+..+..        ...++|.|+++  ++++|||+|++|+.++|+ +.++.+|++++|++||..+.-+-+++++
T Consensus       368 g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e  447 (463)
T PRK06370        368 GRRVLVGTRPMTRVGRAVEKGETQGFMKVVVDADTDRILGATILGVHGDEMIHEILDAMYAGAPYTTLSRAIHIHPTVSE  447 (463)
T ss_pred             CCCeEEEEEecCcchhHHhcCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcccCCChHH
Confidence            222222222111        23568899888  589999999999999885 9999999999999977776666555543

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=100.00  E-value=1.6e-51  Score=403.01  Aligned_cols=397  Identities=18%  Similarity=0.199  Sum_probs=291.8

Q ss_pred             CCCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-C----CCCCCCCccccccCCCCC----CCCCCc---ccc
Q 013952            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-V----APYERPALSKAYLFPEGT----ARLPGF---HVC   68 (433)
Q Consensus         1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~----~~~~~~~~~~~~~~~~~~----~~~~~~---~~~   68 (433)
                      |++.+|||+||||||+|++||.+|++.|++   |+|||+. .    +.+..|..++.+......    ...+.+   ...
T Consensus         1 ~~~~~yDvvVIGaGpaG~~aA~~la~~G~~---v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~   77 (461)
T PRK05249          1 MHMYDYDLVVIGSGPAGEGAAMQAAKLGKR---VAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVK   77 (461)
T ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCE---EEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCc
Confidence            788889999999999999999999999987   9999985 1    223333333332211000    000000   000


Q ss_pred             cCCC--------------CCCCCHhHHHhCCcEEEeCceEEEEECCCCEEEeCCCc--EEecceEEEccCCCccccCCCC
Q 013952           69 VGSG--------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGL--IFKYQILVIATGSTVLRLTDFG  132 (433)
Q Consensus        69 ~~~~--------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~--~~~~d~lvlAtG~~~~~~~~~~  132 (433)
                      ...+              ........+++.+++++.+ .+..++.....+...++.  +++||+||||||+.|..|+.  
T Consensus        78 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs~p~~p~~--  154 (461)
T PRK05249         78 LRITFADLLARADHVINKQVEVRRGQYERNRVDLIQG-RARFVDPHTVEVECPDGEVETLTADKIVIATGSRPYRPPD--  154 (461)
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE-EEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCC--
Confidence            0000              0012234456789999987 555566544455555554  79999999999999988874  


Q ss_pred             CCCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHH
Q 013952          133 VEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEG  212 (433)
Q Consensus       133 ~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~  212 (433)
                       ++.+..++++..++.+..       . .+++++|||+|++|+|+|..|++.|.+|+++++.+++++. +++++.+.+.+
T Consensus       155 -~~~~~~~v~~~~~~~~~~-------~-~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~l~~  224 (461)
T PRK05249        155 -VDFDHPRIYDSDSILSLD-------H-LPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSF-LDDEISDALSY  224 (461)
T ss_pred             -CCCCCCeEEcHHHhhchh-------h-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCc-CCHHHHHHHHH
Confidence             444445565443322211       1 4799999999999999999999999999999999998886 89999999999


Q ss_pred             HHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh---hccccc-CCCcEEeCCCCCCCC
Q 013952          213 YYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSA  288 (433)
Q Consensus       213 ~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~  288 (433)
                      .+++.||+++++++++++...+++  ..+.+.+|+++++|.+++|+|++||++++   ..++.. ++|++.||+++||+.
T Consensus       225 ~l~~~gI~v~~~~~v~~i~~~~~~--~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~  302 (461)
T PRK05249        225 HLRDSGVTIRHNEEVEKVEGGDDG--VIVHLKSGKKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNENYQTAV  302 (461)
T ss_pred             HHHHcCCEEEECCEEEEEEEeCCe--EEEEECCCCEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeCCCcccCC
Confidence            999999999999999999863332  45667778889999999999999999854   345665 568899999999999


Q ss_pred             CCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCCC-----
Q 013952          289 DDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG-----  363 (433)
Q Consensus       289 ~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~-----  363 (433)
                      |+|||+|||++.+          ..+..|..+|++||.||++...   ...+..+|+++++.|+++.+  |+++.     
T Consensus       303 ~~IyAiGD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~---~~~~~~~p~~i~~~p~ia~v--G~te~~a~~~  367 (461)
T PRK05249        303 PHIYAVGDVIGFP----------SLASASMDQGRIAAQHAVGEAT---AHLIEDIPTGIYTIPEISSV--GKTEQELTAA  367 (461)
T ss_pred             CCEEEeeecCCCc----------ccHhHHHHHHHHHHHHHcCCCc---ccccCCCCeEEECCCcceEe--cCCHHHHHHc
Confidence            9999999999755          4577899999999999986432   25677899999888877655  66642     


Q ss_pred             -cEEEEcC-----CCcc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhcccCCCcc
Q 013952          364 -DTVLFGD-----NDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFA  430 (433)
Q Consensus       364 -~~~~~~~-----~~~~---~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (433)
                       ..+..+.     ....   ....+|.|+++  ++++|+|+|++|++++|+ +.++.+|++++|++|+..+.-+-++++
T Consensus       368 g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~  446 (461)
T PRK05249        368 KVPYEVGRARFKELARAQIAGDNVGMLKILFHRETLEILGVHCFGERATEIIHIGQAIMEQKGTIEYFVNTTFNYPTMA  446 (461)
T ss_pred             CCCeEEEEEccccccceeecCCCCcEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCCHH
Confidence             2122221     1111   23567888887  579999999999999885 999999999999997766655555544

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=100.00  E-value=4.6e-51  Score=396.02  Aligned_cols=393  Identities=17%  Similarity=0.223  Sum_probs=287.6

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC----CCCCCCCCccccccCCCCC----CCCCCcccccC--C--
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE----VAPYERPALSKAYLFPEGT----ARLPGFHVCVG--S--   71 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~----~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~--~--   71 (433)
                      ++|||+||||||||++||..|++.|++   |+|||+.    .+....|.+++.++.....    ...+.+.....  .  
T Consensus         1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~---V~liE~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~   77 (450)
T TIGR01421         1 KHYDYLVIGGGSGGIASARRAAEHGAK---ALLVEAKKLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTF   77 (450)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCc---EEEecccccccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCcc
Confidence            469999999999999999999999988   9999987    2344445555543322110    00000000000  0  


Q ss_pred             --------------CCCCCCHhHHHhCCcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCcccc-CCCCCCCC
Q 013952           72 --------------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRL-TDFGVEGA  136 (433)
Q Consensus        72 --------------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~-~~~~~~g~  136 (433)
                                    .........+++.+++++.++.+.   .+.++|.+ ++++++||+||||||++|+.| +   +||.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~---~~~~~v~v-~~~~~~~d~vIiAtGs~p~~p~~---i~g~  150 (450)
T TIGR01421        78 NWPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARF---TKDGTVEV-NGRDYTAPHILIATGGKPSFPEN---IPGA  150 (450)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE---ccCCEEEE-CCEEEEeCEEEEecCCCCCCCCC---CCCC
Confidence                          000112334556799999986543   24566665 556799999999999999877 5   5664


Q ss_pred             CCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHh
Q 013952          137 DAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYAN  216 (433)
Q Consensus       137 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~  216 (433)
                      +.  .+   +.++...+.    . .+++++|||+|++|+|+|..|++.|.+|+++++.+++++. +++++.+.+++.+++
T Consensus       151 ~~--~~---~~~~~~~~~----~-~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~-~d~~~~~~~~~~l~~  219 (450)
T TIGR01421       151 EL--GT---DSDGFFALE----E-LPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRS-FDSMISETITEEYEK  219 (450)
T ss_pred             ce--eE---cHHHhhCcc----c-cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcc-cCHHHHHHHHHHHHH
Confidence            31  12   222222211    1 3789999999999999999999999999999999988876 799999999999999


Q ss_pred             cCcEEEcCCeEEEEEecCCCcEEEEEeCCC-cEEECCEEEEcccCccChhhh---hccccc-CCCcEEeCCCCCCCCCCe
Q 013952          217 KGIKIIKGTVAVGFTTNADGEVKEVKLKDG-RTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSADDV  291 (433)
Q Consensus       217 ~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g-~~i~~d~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~v  291 (433)
                      .||++++++.++++..+.++ ...+.+.+| +.+++|.|++++|++||++++   ..++.. ++|++.||+++||++|+|
T Consensus       220 ~gI~i~~~~~v~~i~~~~~~-~~~v~~~~g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~T~~p~I  298 (450)
T TIGR01421       220 EGINVHKLSKPVKVEKTVEG-KLVIHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEYQNTNVPGI  298 (450)
T ss_pred             cCCEEEcCCEEEEEEEeCCc-eEEEEECCCcEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCCCCcCCCCCE
Confidence            99999999999999863233 245677777 579999999999999999853   345665 568899999999999999


Q ss_pred             EEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCCCcE------
Q 013952          292 YAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDT------  365 (433)
Q Consensus       292 fa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~~------  365 (433)
                      ||+|||++.+          ..+..|.+||+.+|+||++... ..+..+..+|++.+..|+++.+  |+++.+.      
T Consensus       299 yAiGD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~-~~~~~~~~~p~~~f~~p~ia~v--Glte~~a~~~~g~  365 (450)
T TIGR01421       299 YALGDVVGKV----------ELTPVAIAAGRKLSERLFNGKT-DDKLDYNNVPTVVFSHPPIGTI--GLTEKEAIEKYGK  365 (450)
T ss_pred             EEEEecCCCc----------ccHHHHHHHHHHHHHHHhcCCC-CCccCcccCCeEEeCCCceEEE--eCCHHHHHhhcCC
Confidence            9999999765          3567889999999999986431 1235678899988887877766  6554211      


Q ss_pred             --EEEcCCC--cc------ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhcccCCCccc
Q 013952          366 --VLFGDND--LA------SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFAS  431 (433)
Q Consensus       366 --~~~~~~~--~~------~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (433)
                        +.....+  +.      ...++|.|+++  ++++|||+|++|+.++|+ +.++.+|++++|++|+..+.-+-+++++
T Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e  444 (450)
T TIGR01421       366 ENIKVYNSSFTPMYYAMTSEKQKCRMKLVCAGKEEKVVGLHGIGDGVDEMLQGFAVAIKMGATKADFDNTVAIHPTSSE  444 (450)
T ss_pred             CCEEEEEEEcChhHHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHH
Confidence              2111111  11      24567888877  589999999999999996 9999999999999987776655555543

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK06116 glutathione reductase; Validated

Probab=100.00  E-value=1.1e-50  Score=395.42  Aligned_cols=394  Identities=21%  Similarity=0.239  Sum_probs=290.3

Q ss_pred             CCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-C---CCCCCCCccccccCCCCC----CC-CCCcccccCC--
Q 013952            3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-V---APYERPALSKAYLFPEGT----AR-LPGFHVCVGS--   71 (433)
Q Consensus         3 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~---~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~--   71 (433)
                      +.+|||+||||||||++||..|+++|++   |+|||+. .   +....|.+++.++.....    .. .+.+......  
T Consensus         2 ~~~~DvvVIG~GpaG~~aA~~~a~~G~~---V~liE~~~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~   78 (450)
T PRK06116          2 TKDYDLIVIGGGSGGIASANRAAMYGAK---VALIEAKRLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENK   78 (450)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCe---EEEEeccchhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCC
Confidence            4579999999999999999999999988   9999987 2   334445555543332110    00 0000000000  


Q ss_pred             ---------------CCCCCCHhHHHhCCcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCCCCCC
Q 013952           72 ---------------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGA  136 (433)
Q Consensus        72 ---------------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~  136 (433)
                                     .........+.+.+++++.+ .+..++  .++|.+ ++++++||+||||||++|..|+   ++|.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g-~~~~v~--~~~v~~-~g~~~~~d~lViATGs~p~~p~---i~g~  151 (450)
T PRK06116         79 FDWAKLIANRDAYIDRLHGSYRNGLENNGVDLIEG-FARFVD--AHTVEV-NGERYTADHILIATGGRPSIPD---IPGA  151 (450)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEcc--CCEEEE-CCEEEEeCEEEEecCCCCCCCC---CCCc
Confidence                           00011223355679999997 555554  467777 6778999999999999998877   5654


Q ss_pred             CCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHh
Q 013952          137 DAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYAN  216 (433)
Q Consensus       137 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~  216 (433)
                      +  .+++..   +...+    .. .+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.+.+++
T Consensus       152 ~--~~~~~~---~~~~~----~~-~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~L~~  220 (450)
T PRK06116        152 E--YGITSD---GFFAL----EE-LPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRG-FDPDIRETLVEEMEK  220 (450)
T ss_pred             c--eeEchh---HhhCc----cc-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCccc-cCHHHHHHHHHHHHH
Confidence            3  233222   22111    11 4789999999999999999999999999999999888775 799999999999999


Q ss_pred             cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh---hccccc-CCCcEEeCCCCCCCCCCeE
Q 013952          217 KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSADDVY  292 (433)
Q Consensus       217 ~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~vf  292 (433)
                      .||+++++++|.+++.++++. ..+.+.+|+++++|.|++|+|++|+++.+   ..++.. ++|+|.||+++||++||||
T Consensus       221 ~GV~i~~~~~V~~i~~~~~g~-~~v~~~~g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~Iy  299 (450)
T PRK06116        221 KGIRLHTNAVPKAVEKNADGS-LTLTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQNTNVPGIY  299 (450)
T ss_pred             CCcEEECCCEEEEEEEcCCce-EEEEEcCCcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCCCCCcCCCCEE
Confidence            999999999999998733432 35777888899999999999999999843   345666 5688999999999999999


Q ss_pred             EcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCCC-------c-
Q 013952          293 AVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG-------D-  364 (433)
Q Consensus       293 a~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~-------~-  364 (433)
                      |+|||++.+          .++..|..||+.+|+||++.... ....|..+|+.+++.|+++.+  |+++.       + 
T Consensus       300 A~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~~-~~~~~~~~p~~if~~p~~a~v--Glte~~a~~~~~~~  366 (450)
T PRK06116        300 AVGDVTGRV----------ELTPVAIAAGRRLSERLFNNKPD-EKLDYSNIPTVVFSHPPIGTV--GLTEEEAREQYGED  366 (450)
T ss_pred             EEeecCCCc----------CcHHHHHHHHHHHHHHHhCCCCC-CcCCcCCCCeEEeCCCccEEe--eCCHHHHHHhCCCC
Confidence            999998654          46778999999999999874321 135778899988887777666  65542       1 


Q ss_pred             EEEEcCCCcc--------ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhcccCCCccc
Q 013952          365 TVLFGDNDLA--------SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFAS  431 (433)
Q Consensus       365 ~~~~~~~~~~--------~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (433)
                      .+.....+..        ..+++|.|+++  ++++|||+|++|+.++|+ +.++.+|++++|++|+..+.-+-+++++
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e  444 (450)
T PRK06116        367 NVKVYRSSFTPMYTALTGHRQPCLMKLVVVGKEEKVVGLHGIGFGADEMIQGFAVAIKMGATKADFDNTVAIHPTAAE  444 (450)
T ss_pred             cEEEEEEecchhHHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCChHH
Confidence            1222222111        24578999888  579999999999999885 9999999999999987776655555543

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=100.00  E-value=1.2e-50  Score=393.69  Aligned_cols=392  Identities=21%  Similarity=0.277  Sum_probs=289.6

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC----CCCCCCCCccccccCCCCC----CCCCCcccccCC-----
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE----VAPYERPALSKAYLFPEGT----ARLPGFHVCVGS-----   71 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~----~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-----   71 (433)
                      +|||+||||||||++||..++++|++   |+|+|+.    .+....|.+++.++.....    .+.+.+......     
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~---V~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~   78 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANHGAK---VAIAEEPRVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDW   78 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCc---EEEEecCccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCH
Confidence            59999999999999999999999988   9999986    2344455556544332211    011111100000     


Q ss_pred             ------------CCCCCCHhHHHhCCcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCCCCCCCCC
Q 013952           72 ------------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAK  139 (433)
Q Consensus        72 ------------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~  139 (433)
                                  .....+...+++.+++++.+ ++..+++....+. .++++++||+||||||++|..|+   +||.+. 
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~v~~~~v~v~-~~g~~~~~d~lIiATGs~p~~p~---i~G~~~-  152 (446)
T TIGR01424        79 KKLLQKKDDEIARLSGLYKRLLANAGVELLEG-RARLVGPNTVEVL-QDGTTYTAKKILIAVGGRPQKPN---LPGHEL-  152 (446)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecCCEEEEe-cCCeEEEcCEEEEecCCcCCCCC---CCCccc-
Confidence                        01122344566789999987 7777776433332 45678999999999999998777   566431 


Q ss_pred             CEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCc
Q 013952          140 NIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGI  219 (433)
Q Consensus       140 ~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV  219 (433)
                       .+   +..++..+.    . .+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.+.+++.||
T Consensus       153 -~~---~~~~~~~l~----~-~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~-~d~~~~~~l~~~l~~~gV  222 (446)
T TIGR01424       153 -GI---TSNEAFHLP----T-LPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRG-FDDDMRALLARNMEGRGI  222 (446)
T ss_pred             -ee---chHHhhccc----c-cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcc-cCHHHHHHHHHHHHHCCC
Confidence             22   222222221    1 4789999999999999999999999999999999988876 789999999999999999


Q ss_pred             EEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh---hccccc-CCCcEEeCCCCCCCCCCeEEcC
Q 013952          220 KIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSADDVYAVG  295 (433)
Q Consensus       220 ~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~vfa~G  295 (433)
                      ++++++++.++...+++  ..+.+.+|+++++|.+++|+|++|+++.+   ..++.. ++|+|.||+++||+.|||||+|
T Consensus       223 ~i~~~~~v~~i~~~~~~--~~v~~~~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~G  300 (446)
T TIGR01424       223 RIHPQTSLTSITKTDDG--LKVTLSHGEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDEYSRTSIPSIYAVG  300 (446)
T ss_pred             EEEeCCEEEEEEEcCCe--EEEEEcCCcEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCCCCccCCCCEEEee
Confidence            99999999999863333  45677788889999999999999999853   345655 5688999999999999999999


Q ss_pred             ccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCCC-------cEEEE
Q 013952          296 DVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG-------DTVLF  368 (433)
Q Consensus       296 d~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~-------~~~~~  368 (433)
                      ||++.+          ..+..|.+||++++.||++...  .+.++..+|+.+++.|+++.+  |+++.       ..+..
T Consensus       301 D~~~~~----------~l~~~A~~~g~~~a~~i~~~~~--~~~~~~~~p~~if~~p~ia~v--G~te~~a~~~~~~~~~~  366 (446)
T TIGR01424       301 DVTDRI----------NLTPVAIMEATCFANTEFGNNP--TKFDHDLIATAVFSQPPLGTV--GLTEEEAREKFTGDILV  366 (446)
T ss_pred             ccCCCc----------cchhHHHHHHHHHHHHHhcCCC--CccCcCCCCeEEeCCchhEEE--ECCHHHHHhhcCCCEEE
Confidence            999754          4567899999999999987432  125667899988887876666  66542       22222


Q ss_pred             cCCCc--------cccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhcccCCCccc
Q 013952          369 GDNDL--------ASATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFAS  431 (433)
Q Consensus       369 ~~~~~--------~~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (433)
                      ...+.        ....++|.|+++  ++++|||+|++|++++|+ +.++.+|++++|++|+..+.-+-+++++
T Consensus       367 ~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e  440 (446)
T TIGR01424       367 YRAGFRPMKNTFSGRQEKTLMKLVVDEKDDKVLGAHMVGPDAAEIIQGIAIALKMGATKADFDSTVGIHPSSAE  440 (446)
T ss_pred             EEEecCchHhHhhcCCCceEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhccccCCChHH
Confidence            21111        123468899887  589999999999999885 9999999999999977766555555543

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PLN02507 glutathione reductase

Probab=100.00  E-value=2.8e-50  Score=393.90  Aligned_cols=392  Identities=19%  Similarity=0.228  Sum_probs=289.4

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcC----------C----CCCCCCCCccccccCCCCC----CCCCCcc
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISK----------E----VAPYERPALSKAYLFPEGT----ARLPGFH   66 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~----------~----~~~~~~~~~~~~~~~~~~~----~~~~~~~   66 (433)
                      +||++||||||+|+.||..++++|++   |+|||+          .    .+.+..|.+++.++.....    .....+.
T Consensus        25 ~yDvvVIG~GpaG~~aA~~a~~~G~~---V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G  101 (499)
T PLN02507         25 DFDLFVIGAGSGGVRAARFSANFGAK---VGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYG  101 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCe---EEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcC
Confidence            58999999999999999999999998   999996          1    2334445555655332211    0000000


Q ss_pred             cccCCC------------------CCCCCHhHHHhCCcEEEeCceEEEEECCCCEEEeCCCc--EEecceEEEccCCCcc
Q 013952           67 VCVGSG------------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGL--IFKYQILVIATGSTVL  126 (433)
Q Consensus        67 ~~~~~~------------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~--~~~~d~lvlAtG~~~~  126 (433)
                      ......                  ........+...+++++.+ .+..+++....|...+++  ++.||+||||||++|.
T Consensus       102 ~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g-~a~~vd~~~v~V~~~~g~~~~~~~d~LIIATGs~p~  180 (499)
T PLN02507        102 WEINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEG-EGKIVGPNEVEVTQLDGTKLRYTAKHILIATGSRAQ  180 (499)
T ss_pred             cccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecCCEEEEEeCCCcEEEEEcCEEEEecCCCCC
Confidence            000000                  0011223345579999997 777788777777777775  5899999999999998


Q ss_pred             ccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHH
Q 013952          127 RLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADI  206 (433)
Q Consensus       127 ~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~  206 (433)
                      .|+   +||.+  ..+   +..++..+.    . .+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++
T Consensus       181 ~p~---ipG~~--~~~---~~~~~~~l~----~-~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~-~d~~~  246 (499)
T PLN02507        181 RPN---IPGKE--LAI---TSDEALSLE----E-LPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRG-FDDEM  246 (499)
T ss_pred             CCC---CCCcc--cee---chHHhhhhh----h-cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcc-cCHHH
Confidence            777   56643  122   233333322    1 3789999999999999999999999999999999888875 79999


Q ss_pred             HHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh---hccccc-CCCcEEeCC
Q 013952          207 AAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDD  282 (433)
Q Consensus       207 ~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~  282 (433)
                      .+.+.+.+++.||+++++++|++++..+++  ..+.+.+|+++++|.|++++|++||+.++   ..++.. ++|+|.||+
T Consensus       247 ~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~--~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~  324 (499)
T PLN02507        247 RAVVARNLEGRGINLHPRTNLTQLTKTEGG--IKVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDE  324 (499)
T ss_pred             HHHHHHHHHhCCCEEEeCCEEEEEEEeCCe--EEEEECCCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecCC
Confidence            999999999999999999999999863222  45677788889999999999999999864   345666 568899999


Q ss_pred             CCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCC
Q 013952          283 FFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV  362 (433)
Q Consensus       283 ~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~  362 (433)
                      ++||+.|||||+|||++.+          .++..|.+||++++.||++...  ....+..+|+.+++.|+++.+  |+++
T Consensus       325 ~~~Ts~p~IyAiGDv~~~~----------~l~~~A~~qg~~aa~ni~g~~~--~~~~~~~~p~~if~~p~ia~v--Glte  390 (499)
T PLN02507        325 YSRTNIPSIWAIGDVTNRI----------NLTPVALMEGTCFAKTVFGGQP--TKPDYENVACAVFCIPPLSVV--GLSE  390 (499)
T ss_pred             CCcCCCCCEEEeeEcCCCC----------ccHHHHHHHHHHHHHHHcCCCC--CcCCCCCCCeEEECCCccEEE--eCCH
Confidence            9999999999999999754          3567889999999999986532  124567789888887777665  6654


Q ss_pred             C-------cEEEEcCCCcc--------ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhcc
Q 013952          363 G-------DTVLFGDNDLA--------SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKN  424 (433)
Q Consensus       363 ~-------~~~~~~~~~~~--------~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~  424 (433)
                      .       ..+.....+..        ...++|.|+++  ++++|||+|++|++++++ +.++.||+.++|++|+..+.-
T Consensus       391 ~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~  470 (499)
T PLN02507        391 EEAVEQAKGDILVFTSSFNPMKNTISGRQEKTVMKLIVDAETDKVLGASMCGPDAPEIMQGIAVALKCGATKAQFDSTVG  470 (499)
T ss_pred             HHHHhccCCCEEEEEeecCccccccccCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcCc
Confidence            2       11222211111        12457888887  589999999999998885 999999999999997776555


Q ss_pred             cCCCcc
Q 013952          425 EGLSFA  430 (433)
Q Consensus       425 ~~~~~~  430 (433)
                      +-++++
T Consensus       471 ~hPt~~  476 (499)
T PLN02507        471 IHPSAA  476 (499)
T ss_pred             CCCChH
Confidence            555444

>PRK14694 putative mercuric reductase; Provisional

Probab=100.00  E-value=6.1e-50  Score=391.15  Aligned_cols=395  Identities=18%  Similarity=0.210  Sum_probs=286.2

Q ss_pred             CCCC-cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC----CCCCCCCCccccccCCCCC----C------CCC--
Q 013952            1 MAEK-SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE----VAPYERPALSKAYLFPEGT----A------RLP--   63 (433)
Q Consensus         1 Mm~~-~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~----~~~~~~~~~~~~~~~~~~~----~------~~~--   63 (433)
                      ||+. .|||+||||||||++||..|++.|++   |+|||++    .+....|.+++.++.....    .      .++  
T Consensus         1 ~~~~~~~dviVIGaG~aG~~aA~~l~~~g~~---v~lie~~~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~   77 (468)
T PRK14694          1 MMSDNNLHIAVIGSGGSAMAAALKATERGAR---VTLIERGTIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQ   77 (468)
T ss_pred             CCCCCcCCEEEECCCHHHHHHHHHHHhCCCc---EEEEEccccccceecCCccccHHHHHHHHHHHHHhhccccCCcccC
Confidence            6654 69999999999999999999999987   9999987    1333334444443211100    0      010  


Q ss_pred             --Ccccc--c--CC----CCCC-CCHhHHHh-CCcEEEeCceEEEEECCCCEEEeCCC--cEEecceEEEccCCCccccC
Q 013952           64 --GFHVC--V--GS----GGER-LLPEWYKE-KGIELILSTEIVRADIASKTLLSATG--LIFKYQILVIATGSTVLRLT  129 (433)
Q Consensus        64 --~~~~~--~--~~----~~~~-~~~~~~~~-~~v~~~~~~~v~~i~~~~~~v~~~~~--~~~~~d~lvlAtG~~~~~~~  129 (433)
                        .+.+.  .  ..    .... .....+.+ .+++++.+ ++..+++....|.+.++  .+++||+||||||++|+.|+
T Consensus        78 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g-~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs~p~~p~  156 (468)
T PRK14694         78 APVVDRSALLAQQQARVEELRESKYQSILRENAAITVLNG-EARFVDERTLTVTLNDGGEQTVHFDRAFIGTGARPAEPP  156 (468)
T ss_pred             CCccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEE-EEEEecCCEEEEEecCCCeEEEECCEEEEeCCCCCCCCC
Confidence              00000  0  00    0000 01222333 38999997 78888888888887776  37999999999999998887


Q ss_pred             CCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHH
Q 013952          130 DFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAF  209 (433)
Q Consensus       130 ~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~  209 (433)
                         +||.+...+++..   +...+    .. .+++++|||+|++|+|+|..|.+.|.+|+++.+ +++++. +++++.+.
T Consensus       157 ---i~G~~~~~~~~~~---~~~~l----~~-~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~-~~~l~~-~~~~~~~~  223 (468)
T PRK14694        157 ---VPGLAETPYLTST---SALEL----DH-IPERLLVIGASVVALELAQAFARLGSRVTVLAR-SRVLSQ-EDPAVGEA  223 (468)
T ss_pred             ---CCCCCCCceEcch---hhhch----hc-CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEC-CCCCCC-CCHHHHHH
Confidence               5665443444332   22222    11 478999999999999999999999999999986 456665 78999999


Q ss_pred             HHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh---hcccccCCCcEEeCCCCCC
Q 013952          210 YEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAENKGGIETDDFFKT  286 (433)
Q Consensus       210 l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~---~~~~~~~~g~i~vd~~~~t  286 (433)
                      +++.+++.||++++++.+.+++.  ++....+.+.++ ++++|.+++|+|++||+.++   ..++..++|+|.||+++||
T Consensus       224 l~~~l~~~GI~v~~~~~v~~i~~--~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~G~i~vd~~~~T  300 (468)
T PRK14694        224 IEAAFRREGIEVLKQTQASEVDY--NGREFILETNAG-TLRAEQLLVATGRTPNTENLNLESIGVETERGAIRIDEHLQT  300 (468)
T ss_pred             HHHHHHhCCCEEEeCCEEEEEEE--cCCEEEEEECCC-EEEeCEEEEccCCCCCcCCCCchhcCcccCCCeEeeCCCccc
Confidence            99999999999999999999986  333344555554 79999999999999999865   2345557788999999999


Q ss_pred             CCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCC----
Q 013952          287 SADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV----  362 (433)
Q Consensus       287 ~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~----  362 (433)
                      ++|+|||+|||+..+          ..+..|..+|++||.||++...   ..++..+|.+++..|+++.+  |+++    
T Consensus       301 s~~~IyA~GD~~~~~----------~~~~~A~~~G~~aa~~i~~~~~---~~~~~~~p~~~~~~p~~a~v--Glte~~a~  365 (468)
T PRK14694        301 TVSGIYAAGDCTDQP----------QFVYVAAAGGSRAAINMTGGDA---SLDLSAMPEVIFTDPQVATV--GLSEAEAQ  365 (468)
T ss_pred             CCCCEEEEeecCCCc----------ccHHHHHHHHHHHHHHhcCCCc---ccccCCCCeEEECCCCeEEe--eCCHHHHH
Confidence            999999999999765          3466788999999999986532   25667788887766665555  7664    


Q ss_pred             --CcEEEEcCCC-----c---cccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhcccCCCc
Q 013952          363 --GDTVLFGDND-----L---ASATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSF  429 (433)
Q Consensus       363 --~~~~~~~~~~-----~---~~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (433)
                        +..+.....+     .   .....+|.|+++  ++++|||+|++|+.++|+ +.++.||++++|++||..+.-+-+++
T Consensus       366 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~  445 (468)
T PRK14694        366 AQGYDTDSRTLDLENVPRALVNFDTGGFIKMVAERGSGRLLGVQVVAGEAGELIQTAVMALRARMTVNEIADELFPYLTM  445 (468)
T ss_pred             HcCCceEEEEEecccchhhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhccccCCCch
Confidence              2122111111     1   123567999887  589999999999998885 99999999999999777666555554


Q ss_pred             c
Q 013952          430 A  430 (433)
Q Consensus       430 ~  430 (433)
                      +
T Consensus       446 ~  446 (468)
T PRK14694        446 V  446 (468)
T ss_pred             H
Confidence            4

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=2.7e-50  Score=392.83  Aligned_cols=395  Identities=19%  Similarity=0.207  Sum_probs=280.7

Q ss_pred             CCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-C----CCCCCCCccccccCCCCC----CCCCCcccccCC-
Q 013952            2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-V----APYERPALSKAYLFPEGT----ARLPGFHVCVGS-   71 (433)
Q Consensus         2 m~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~----~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-   71 (433)
                      |+.+|||+||||||+|++||..|++.|++   |+|||+. .    +....|.+++.++.....    .+...+...... 
T Consensus         1 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~---V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~   77 (471)
T PRK06467          1 MEIKTQVVVLGAGPAGYSAAFRAADLGLE---TVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEP   77 (471)
T ss_pred             CCccceEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCC
Confidence            34569999999999999999999999988   9999975 1    333334555544421110    000000000000 


Q ss_pred             ----------------CCCCCCHhHHHhCCcEEEeCceEEEEECCCCEEEeCCC--cEEecceEEEccCCCccccCCCCC
Q 013952           72 ----------------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATG--LIFKYQILVIATGSTVLRLTDFGV  133 (433)
Q Consensus        72 ----------------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~--~~~~~d~lvlAtG~~~~~~~~~~~  133 (433)
                                      .........+++.+++++.+. +..++...-.|...++  .+++||+||||||++|+.++.  +
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~-a~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~p~--~  154 (471)
T PRK06467         78 KIDIDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGL-GKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPF--I  154 (471)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEccCCEEEEecCCCceEEEEcCEEEEeCCCCCCCCCC--C
Confidence                            000112234566799999974 4444432222333455  479999999999999975543  3


Q ss_pred             CCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHH
Q 013952          134 EGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGY  213 (433)
Q Consensus       134 ~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~  213 (433)
                      ++ +...+++.   .++..+.    . .+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.+.
T Consensus       155 ~~-~~~~v~~~---~~~~~~~----~-~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~-~d~~~~~~~~~~  224 (471)
T PRK06467        155 PH-DDPRIWDS---TDALELK----E-VPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPA-ADKDIVKVFTKR  224 (471)
T ss_pred             CC-CCCcEECh---HHhhccc----c-CCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCc-CCHHHHHHHHHH
Confidence            33 33445433   2332221    1 4789999999999999999999999999999999999887 799999999999


Q ss_pred             HHhcCcEEEcCCeEEEEEecCCCcEEEEEeCC--C--cEEECCEEEEcccCccChhhh---hccccc-CCCcEEeCCCCC
Q 013952          214 YANKGIKIIKGTVAVGFTTNADGEVKEVKLKD--G--RTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFK  285 (433)
Q Consensus       214 l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~--g--~~i~~d~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~  285 (433)
                      +++. |++++++.+++++..+++  ..+.+.+  +  +++++|.|++++|++||++++   ..++.. ++|+|.||+++|
T Consensus       225 l~~~-v~i~~~~~v~~i~~~~~~--~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~~~  301 (471)
T PRK06467        225 IKKQ-FNIMLETKVTAVEAKEDG--IYVTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQCR  301 (471)
T ss_pred             Hhhc-eEEEcCCEEEEEEEcCCE--EEEEEEeCCCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCCCcc
Confidence            9988 999999999999863333  3454433  2  469999999999999999854   345666 578899999999


Q ss_pred             CCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCCC--
Q 013952          286 TSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG--  363 (433)
Q Consensus       286 t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~--  363 (433)
                      |+.|+|||+|||++.+          ..+..|.++|+.||.||.+...   ..++..+|++++..|+++.+  |+++.  
T Consensus       302 t~~p~VyAiGDv~~~~----------~la~~A~~eG~~aa~~i~g~~~---~~~~~~~p~~~~~~p~ia~v--Glte~ea  366 (471)
T PRK06467        302 TNVPHIFAIGDIVGQP----------MLAHKGVHEGHVAAEVIAGKKH---YFDPKVIPSIAYTEPEVAWV--GLTEKEA  366 (471)
T ss_pred             cCCCCEEEehhhcCCc----------ccHHHHHHHHHHHHHHHcCCCC---CCCCCCCCeEEECCCceeEE--ECCHHHH
Confidence            9999999999999755          4577899999999999987532   25667788887655555544  76652  


Q ss_pred             ----cEEEEcCCC-----cc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhcccCCC
Q 013952          364 ----DTVLFGDND-----LA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLS  428 (433)
Q Consensus       364 ----~~~~~~~~~-----~~---~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  428 (433)
                          ..+..+..+     ..   ....+|.|+++  ++++|+|+|++|++++|+ +.++.+|++++|++|+..+.-+-++
T Consensus       367 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~t~~ilG~~~vg~~a~e~i~~~a~ai~~~~t~~~l~~~~~~hPt  446 (471)
T PRK06467        367 KEEGIEYETATFPWAASGRAIASDCADGMTKLIFDKETHRVLGGAIVGTNAGELLGEIGLAIEMGCDAEDIALTIHAHPT  446 (471)
T ss_pred             HhcCCCeEEEEEecCcchhhhhCCCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCC
Confidence                122222111     11   23567898888  579999999999999885 9999999999999988877555555


Q ss_pred             cc
Q 013952          429 FA  430 (433)
Q Consensus       429 ~~  430 (433)
                      |+
T Consensus       447 ~~  448 (471)
T PRK06467        447 LH  448 (471)
T ss_pred             hH
Confidence            44

>PTZ00058 glutathione reductase; Provisional

Probab=100.00  E-value=2.1e-49  Score=388.51  Aligned_cols=400  Identities=18%  Similarity=0.207  Sum_probs=289.8

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC----CCCCCCCCccccccCCCCCCC------CCCcccccCC---
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE----VAPYERPALSKAYLFPEGTAR------LPGFHVCVGS---   71 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~----~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~---   71 (433)
                      +||++|||||+||++||..+++.|.+   |+|||++    .+....|.++|.++.......      ..++......   
T Consensus        48 ~yDvvVIG~G~aG~~aA~~aa~~G~~---ValIEk~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~d~~  124 (561)
T PTZ00058         48 VYDLIVIGGGSGGMAAARRAARNKAK---VALVEKDYLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSFNLP  124 (561)
T ss_pred             cccEEEECcCHHHHHHHHHHHHcCCe---EEEEecccccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCccCHH
Confidence            68999999999999999999999987   9999987    355666777777665443211      0011100000   


Q ss_pred             -----------CCCCCCHhHHHhCCcEEEeCceEEEEECCCCEE----------------------------EeCCCcEE
Q 013952           72 -----------GGERLLPEWYKEKGIELILSTEIVRADIASKTL----------------------------LSATGLIF  112 (433)
Q Consensus        72 -----------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v----------------------------~~~~~~~~  112 (433)
                                 .......+.+++.+|+++.+...+.   +.++|                            ...++.++
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~---~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~i  201 (561)
T PTZ00058        125 LLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLL---SENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQVI  201 (561)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEe---cCCEEEeeccccccccccccccccceeeeccceecCCCcEE
Confidence                       0011233445668999999865332   12222                            12466789


Q ss_pred             ecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEc
Q 013952          113 KYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVY  192 (433)
Q Consensus       113 ~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~  192 (433)
                      +||+||||||++|..|+   ++|.+  .+++.   .+...+    .  .+++++|||+|++|+|+|..|.+.|.+|++++
T Consensus       202 ~ad~lVIATGS~P~~P~---IpG~~--~v~ts---~~~~~l----~--~pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~  267 (561)
T PTZ00058        202 EGKNILIAVGNKPIFPD---VKGKE--FTISS---DDFFKI----K--EAKRIGIAGSGYIAVELINVVNRLGAESYIFA  267 (561)
T ss_pred             ECCEEEEecCCCCCCCC---CCCce--eEEEH---HHHhhc----c--CCCEEEEECCcHHHHHHHHHHHHcCCcEEEEE
Confidence            99999999999998877   56643  23332   222221    1  37899999999999999999999999999999


Q ss_pred             cCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCC-CcEEECCEEEEcccCccChhhhhc--
Q 013952          193 PEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD-GRTLEADIVVVGVGGRPLISLFKG--  269 (433)
Q Consensus       193 ~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~-g~~i~~d~vi~a~G~~p~~~~~~~--  269 (433)
                      +.+++++. +++++.+.+.+.+++.||++++++.+.+++..+++.+ .+.+.+ ++++++|.|++|+|++|+++.+..  
T Consensus       268 ~~~~il~~-~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v-~v~~~~~~~~i~aD~VlvA~Gr~Pn~~~L~l~~  345 (561)
T PTZ00058        268 RGNRLLRK-FDETIINELENDMKKNNINIITHANVEEIEKVKEKNL-TIYLSDGRKYEHFDYVIYCVGRSPNTEDLNLKA  345 (561)
T ss_pred             eccccccc-CCHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcE-EEEECCCCEEEECCEEEECcCCCCCccccCccc
Confidence            99988875 7999999999999999999999999999986333333 334434 457999999999999999987642  


Q ss_pred             -ccccCCCcEEeCCCCCCCCCCeEEcCcccccccc-----------------------ccCccc-ccccHHHHHHHHHHH
Q 013952          270 -QVAENKGGIETDDFFKTSADDVYAVGDVATFPMK-----------------------LYREMR-RVEHVDHARKSAEQA  324 (433)
Q Consensus       270 -~~~~~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~-----------------------~~~~~~-~~~~~~~A~~~g~~a  324 (433)
                       ++..++|+|.||+++||+.|+|||+|||++.++.                       ..+.+. ..+++..|.+||+++
T Consensus       346 ~~~~~~~G~I~VDe~lqTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~a  425 (561)
T PTZ00058        346 LNIKTPKGYIKVDDNQRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLL  425 (561)
T ss_pred             cceecCCCeEEECcCCccCCCCEEEeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHH
Confidence             2333678899999999999999999999984321                       122232 357888999999999


Q ss_pred             HHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCCCc--------EEEEcCCCc------------cccCCcEEEEE
Q 013952          325 VKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGD--------TVLFGDNDL------------ASATHKFGTYW  384 (433)
Q Consensus       325 a~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~--------~~~~~~~~~------------~~~~~~~~~~~  384 (433)
                      |.||++....  ..++..+|+.++..|+++.+  |+++.+        .+.....+.            .....+|.|++
T Consensus       426 a~ni~g~~~~--~~~~~~ip~~vft~peiA~v--Glte~eA~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli  501 (561)
T PTZ00058        426 ADRLFGPFSR--TTNYKLIPSVIFSHPPIGTI--GLSEQEAIDIYGKENVKIYESRFTNLFFSVYDMDPAQKEKTYLKLV  501 (561)
T ss_pred             HHHHhCCCCc--ccCCCCCCeEEeCCchheee--eCCHHHHHHhcCCCcEEEEEeecchhhhhhhcccccCCCCeEEEEE
Confidence            9999875321  24677899988877777666  665421        122211111            11245788888


Q ss_pred             E--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhcccCCCcc
Q 013952          385 I--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFA  430 (433)
Q Consensus       385 ~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (433)
                      +  ++++|+|+|++|++++|+ +.++.||++++|++|+..+.-+-++++
T Consensus       502 ~~~~t~~ILG~~ivG~~a~elI~~~a~ai~~~~t~~dl~~~~~~hPt~~  550 (561)
T PTZ00058        502 CVGKEELIKGLHIVGLNADEILQGFAVALKMNATKADFDETIPIHPTAA  550 (561)
T ss_pred             EECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhcccCCCChH
Confidence            7  589999999999999885 999999999999997776655555544

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=100.00  E-value=7.2e-48  Score=393.88  Aligned_cols=389  Identities=20%  Similarity=0.336  Sum_probs=305.0

Q ss_pred             CCCCcCeEEEECCCHHHHHHHHHHHHcCC-CCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCH
Q 013952            1 MAEKSFKYVILGGGVSAGYAAREFAKQGV-KPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLP   78 (433)
Q Consensus         1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g~-~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (433)
                      ||  +.+|||||+|+||+.+|..|++.+. +..+|+||+++ ..+|.++.++..+.. ....           .......
T Consensus         1 m~--~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~-~~~~-----------~l~~~~~   66 (847)
T PRK14989          1 MS--KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSH-HTAE-----------ELSLVRE   66 (847)
T ss_pred             CC--CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcC-CCHH-----------HccCCCH
Confidence            55  3589999999999999999987642 34569999999 788888777653321 1111           1123456


Q ss_pred             hHHHhCCcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHH
Q 013952           79 EWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIK  158 (433)
Q Consensus        79 ~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~  158 (433)
                      +++++.+++++.++.|+.|+++.+.|.+.++.+++||+||||||+.|+.|+   +||.+..+++.++++.++..+.+.+.
T Consensus        67 ~~~~~~gI~~~~g~~V~~Id~~~~~V~~~~G~~i~yD~LVIATGs~p~~p~---ipG~~~~~v~~~rt~~d~~~l~~~~~  143 (847)
T PRK14989         67 GFYEKHGIKVLVGERAITINRQEKVIHSSAGRTVFYDKLIMATGSYPWIPP---IKGSETQDCFVYRTIEDLNAIEACAR  143 (847)
T ss_pred             HHHHhCCCEEEcCCEEEEEeCCCcEEEECCCcEEECCEEEECCCCCcCCCC---CCCCCCCCeEEECCHHHHHHHHHHHh
Confidence            788899999999999999999999999989989999999999999999887   67877788999999999988877765


Q ss_pred             hcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcE
Q 013952          159 AKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEV  238 (433)
Q Consensus       159 ~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~  238 (433)
                        .+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++..++++..+.+++.+++.||++++++.++++..+.++..
T Consensus       144 --~~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~  221 (847)
T PRK14989        144 --RSKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEAR  221 (847)
T ss_pred             --cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhhhcCHHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCce
Confidence              478999999999999999999999999999999999888668999999999999999999999999999976333455


Q ss_pred             EEEEeCCCcEEECCEEEEcccCccChhhhh-ccccc-CCCcEEeCCCCCCCCCCeEEcCccccccccccCcccccccHHH
Q 013952          239 KEVKLKDGRTLEADIVVVGVGGRPLISLFK-GQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDH  316 (433)
Q Consensus       239 ~~v~~~~g~~i~~d~vi~a~G~~p~~~~~~-~~~~~-~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~  316 (433)
                      ..+.+.+|+++++|.||+|+|++||++++. .++.. ++|+|.||++|||+.|+|||+|||+......+      .++..
T Consensus       222 ~~v~~~dG~~i~~D~Vv~A~G~rPn~~L~~~~Gl~~~~~G~I~VD~~l~Ts~p~IYAiGD~a~~~~~~~------gl~~~  295 (847)
T PRK14989        222 KTMRFADGSELEVDFIVFSTGIRPQDKLATQCGLAVAPRGGIVINDSCQTSDPDIYAIGECASWNNRVF------GLVAP  295 (847)
T ss_pred             EEEEECCCCEEEcCEEEECCCcccCchHHhhcCccCCCCCcEEECCCCcCCCCCEEEeecceeEcCccc------ccHHH
Confidence            678889999999999999999999999874 46766 56899999999999999999999998865432      46788


Q ss_pred             HHHHHHHHHHHHhccCCCCCccCCCCC-CeEEEeecccceEEecCCCCc-----EEEEcCCCccccCCcEEEEEE--eCC
Q 013952          317 ARKSAEQAVKTIMATEGGKTVTGYDYL-PYFYSRAFDLSWQFYGDNVGD-----TVLFGDNDLASATHKFGTYWI--KDG  388 (433)
Q Consensus       317 A~~~g~~aa~~i~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~~  388 (433)
                      |..+|++||.||.+..     ..|... .....+.+++.+..+|...+.     .+.+-+.    ....|.|+++  +++
T Consensus       296 a~~~a~vaa~~i~g~~-----~~~~g~~~~~~lk~~G~~v~s~G~~~~~~~~~~~~~~~~~----~~~~y~Klv~~~~~~  366 (847)
T PRK14989        296 GYKMAQVAVDHLLGSE-----NAFEGADLSAKLKLLGVDVGGIGDAHGRTPGARSYVYLDE----SKEIYKRLIVSEDNK  366 (847)
T ss_pred             HHHHHHHHHHHhcCCC-----cCCCCcccceEEEECCcceEecccccCCCCCceeEEEEcC----CCCEEEEEEEECCCC
Confidence            9999999999998753     223321 122345566666666643221     1111111    1467899888  467


Q ss_pred             EEEEEEEecCChHHHHHHHHHHHcCCCCCC-hhhhcc
Q 013952          389 KVVGVFLESGTPEENKAIAKVARVQPSVES-LDVLKN  424 (433)
Q Consensus       389 ~l~G~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~  424 (433)
                      +|+|++++|+. ++...+..++.+++++.+ .+.|..
T Consensus       367 ~LlGa~lvGd~-~~~~~l~~~~~~~~~l~~~~~~l~~  402 (847)
T PRK14989        367 TLLGAVLVGDT-SDYGNLLQLVLNAIELPENPDSLIL  402 (847)
T ss_pred             EEEEEEEECCH-HHHHHHHHHHHcCCCCccchhheec
Confidence            99999999954 445555555556766643 334444

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=100.00  E-value=1.7e-49  Score=385.85  Aligned_cols=393  Identities=20%  Similarity=0.260  Sum_probs=286.1

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHc-CCCCCcEEEEcC----------C---CCCCCCCCccccccCCCCC----CCCCCc
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQ-GVKPGELAIISK----------E---VAPYERPALSKAYLFPEGT----ARLPGF   65 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~-g~~~~~V~lie~----------~---~~~~~~~~~~~~~~~~~~~----~~~~~~   65 (433)
                      +.||++||||||+|..||..++++ |.+   |+|||+          .   .|....|.++|.++.....    .+...+
T Consensus         2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~---V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~   78 (486)
T TIGR01423         2 KAFDLVVIGAGSGGLEAGWNAATLYKKR---VAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGF   78 (486)
T ss_pred             CccCEEEECCChHHHHHHHHHHHhcCCE---EEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhcc
Confidence            469999999999999999999996 887   999996          1   3556667777766544311    011111


Q ss_pred             ccccC--C---C--------------CCCCCHhHHHh-CCcEEEeCceEEEEECCCCEEEeCC--------CcEEecceE
Q 013952           66 HVCVG--S---G--------------GERLLPEWYKE-KGIELILSTEIVRADIASKTLLSAT--------GLIFKYQIL  117 (433)
Q Consensus        66 ~~~~~--~---~--------------~~~~~~~~~~~-~~v~~~~~~~v~~i~~~~~~v~~~~--------~~~~~~d~l  117 (433)
                      .....  .   +              ........++. .+++++.+...+ +  +.++|.+.+        .++++||+|
T Consensus        79 gi~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f-~--~~~~v~V~~~~~~~~~~~~~~~~d~l  155 (486)
T TIGR01423        79 GWEFDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGAL-E--DKNVVLVRESADPKSAVKERLQAEHI  155 (486)
T ss_pred             CeeccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEE-c--cCCEEEEeeccCCCCCcceEEECCEE
Confidence            00000  0   0              00112223444 489999985432 2  456665531        247999999


Q ss_pred             EEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhC---CCeEEEEccC
Q 013952          118 VIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKIN---NIDVSMVYPE  194 (433)
Q Consensus       118 vlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~---g~~V~li~~~  194 (433)
                      |||||++|..|+   +||.+  .+++   ..++..+    .. .+++++|||+|++|+|+|..|..+   |.+|+++++.
T Consensus       156 IIATGs~p~~p~---i~G~~--~~~~---~~~~~~~----~~-~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~  222 (486)
T TIGR01423       156 LLATGSWPQMLG---IPGIE--HCIS---SNEAFYL----DE-PPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRN  222 (486)
T ss_pred             EEecCCCCCCCC---CCChh--heec---hhhhhcc----cc-CCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecC
Confidence            999999998777   56643  2332   2222221    11 478999999999999999877655   9999999999


Q ss_pred             CccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh---hccc
Q 013952          195 PWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQV  271 (433)
Q Consensus       195 ~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~---~~~~  271 (433)
                      +++++. +++++.+.+.+.|++.||++++++.++++...+++ ...+.+.+++++++|.+++|+|++|++.++   ..++
T Consensus       223 ~~il~~-~d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~-~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl  300 (486)
T TIGR01423       223 NMILRG-FDSTLRKELTKQLRANGINIMTNENPAKVTLNADG-SKHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGV  300 (486)
T ss_pred             Cccccc-cCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCc-eEEEEEcCCCEEEcCEEEEeeCCCcCcccCCchhhCc
Confidence            998875 89999999999999999999999999999863333 345677778889999999999999999865   3456


Q ss_pred             cc-CCCcEEeCCCCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEee
Q 013952          272 AE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRA  350 (433)
Q Consensus       272 ~~-~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~  350 (433)
                      .. ++|+|.||+++||+.|||||+|||++.+          .....|.+||+++++||++...  ....+..+|+++++.
T Consensus       301 ~~~~~G~I~Vd~~l~Ts~~~IyA~GDv~~~~----------~l~~~A~~qG~~aa~ni~g~~~--~~~~~~~vp~~vft~  368 (486)
T TIGR01423       301 ELTKKGAIQVDEFSRTNVPNIYAIGDVTDRV----------MLTPVAINEGAAFVDTVFGNKP--RKTDHTRVASAVFSI  368 (486)
T ss_pred             eECCCCCEecCCCCcCCCCCEEEeeecCCCc----------ccHHHHHHHHHHHHHHHhCCCC--cccCCCCCCEEEeCC
Confidence            66 5688999999999999999999999765          4566789999999999986432  124666789999888


Q ss_pred             cccceEEecCCCCc------EEEEcCCCc--------c-ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHc
Q 013952          351 FDLSWQFYGDNVGD------TVLFGDNDL--------A-SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARV  412 (433)
Q Consensus       351 ~~~~~~~~g~~~~~------~~~~~~~~~--------~-~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~  412 (433)
                      |+++.+  |+++.+      .+.....+.        . ...++|.|+++  ++++|||+|++|+.++|+ +.++.||++
T Consensus       369 peia~v--Glte~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~~~~iLGa~ivg~~a~elI~~~~~ai~~  446 (486)
T TIGR01423       369 PPIGTC--GLVEEDAAKKFEKVAVYESSFTPLMHNISGSKYKKFVAKIVTNHADGTVLGVHLLGDSSPEIIQAVGICLKL  446 (486)
T ss_pred             CceEEe--eCCHHHHHhcCCceEEEEEeeCchhhhhccCccCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHc
Confidence            876655  666521      111111110        0 11257888887  579999999999999885 999999999


Q ss_pred             CCCCCChhhhcccCCCccc
Q 013952          413 QPSVESLDVLKNEGLSFAS  431 (433)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~  431 (433)
                      ++|++|+..+.-+-+++++
T Consensus       447 ~~t~~dl~~~~~~hPt~sE  465 (486)
T TIGR01423       447 NAKISDFYNTIGVHPTSAE  465 (486)
T ss_pred             CCCHHHHhhcccCCCCcHH
Confidence            9999988877666655553

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK07846 mycothione reductase; Reviewed

Probab=100.00  E-value=3.8e-49  Score=382.32  Aligned_cols=382  Identities=18%  Similarity=0.229  Sum_probs=280.9

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC----CCCCCCCCccccccCCCCCC----CCC--Ccc-----cc-
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE----VAPYERPALSKAYLFPEGTA----RLP--GFH-----VC-   68 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~----~~~~~~~~~~~~~~~~~~~~----~~~--~~~-----~~-   68 (433)
                      +||++||||||+|.+||..  ..|.+   |+|||++    .+.+..|.++|.++......    +.+  +..     .. 
T Consensus         1 ~yD~vVIG~G~~g~~aa~~--~~G~~---V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~   75 (451)
T PRK07846          1 HYDLIIIGTGSGNSILDER--FADKR---IAIVEKGTFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRW   75 (451)
T ss_pred             CCCEEEECCCHHHHHHHHH--HCCCe---EEEEeCCCCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCH
Confidence            4899999999999988865  45877   9999987    35666677777554332110    000  100     00 


Q ss_pred             ---------cCCCCCC-CCHhH-HHhCCcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCCCCCCC
Q 013952           69 ---------VGSGGER-LLPEW-YKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGAD  137 (433)
Q Consensus        69 ---------~~~~~~~-~~~~~-~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~  137 (433)
                               .-..... ....+ ++..+++++.+.... +  +.++|.+.++++++||+||||||++|+.|+   +++.+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~-~--~~~~V~v~~g~~~~~d~lViATGs~p~~p~---i~g~~  149 (451)
T PRK07846         76 PDIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARF-I--GPKTLRTGDGEEITADQVVIAAGSRPVIPP---VIADS  149 (451)
T ss_pred             HHHHHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEE-e--cCCEEEECCCCEEEeCEEEEcCCCCCCCCC---CCCcC
Confidence                     0000011 12233 567899999985443 3  578888888888999999999999998887   46544


Q ss_pred             CCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhc
Q 013952          138 AKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK  217 (433)
Q Consensus       138 ~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~  217 (433)
                      ...+++   ..++..+..     .+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.+ +.
T Consensus       150 ~~~~~~---~~~~~~l~~-----~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~-~d~~~~~~l~~l~-~~  219 (451)
T PRK07846        150 GVRYHT---SDTIMRLPE-----LPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRH-LDDDISERFTELA-SK  219 (451)
T ss_pred             CccEEc---hHHHhhhhh-----cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc-cCHHHHHHHHHHH-hc
Confidence            333433   333333221     4789999999999999999999999999999999988875 7899988887755 56


Q ss_pred             CcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh---hccccc-CCCcEEeCCCCCCCCCCeEE
Q 013952          218 GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSADDVYA  293 (433)
Q Consensus       218 GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~vfa  293 (433)
                      ||++++++++.+++.. ++ ...+.+.+|+++++|.|++|+|++|+++++   +.++.. ++|+|.||+++||+.|||||
T Consensus       220 ~v~i~~~~~v~~i~~~-~~-~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~~~~Ts~p~IyA  297 (451)
T PRK07846        220 RWDVRLGRNVVGVSQD-GS-GVTLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEYQRTSAEGVFA  297 (451)
T ss_pred             CeEEEeCCEEEEEEEc-CC-EEEEEECCCcEeecCEEEEEECCccCccccCchhcCceECCCCcEeECCCcccCCCCEEE
Confidence            8999999999999862 22 245777788899999999999999999875   345666 57889999999999999999


Q ss_pred             cCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCCC------cEEE
Q 013952          294 VGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG------DTVL  367 (433)
Q Consensus       294 ~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~------~~~~  367 (433)
                      +|||+..+          ++...|.+||++++.||++.... ...++..+|+++++.++++.+  |+++.      ..+.
T Consensus       298 ~GD~~~~~----------~l~~~A~~~g~~~a~ni~~~~~~-~~~~~~~~p~~if~~p~ia~v--Glte~~a~~~g~~~~  364 (451)
T PRK07846        298 LGDVSSPY----------QLKHVANHEARVVQHNLLHPDDL-IASDHRFVPAAVFTHPQIASV--GLTENEARAAGLDIT  364 (451)
T ss_pred             EeecCCCc----------cChhHHHHHHHHHHHHHcCCCCc-cccCCCCCCeEEECCCCcEeE--eCCHHHHHhcCCCEE
Confidence            99999865          34567889999999999865211 125677889988876766655  66652      2222


Q ss_pred             EcCCC-----cc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhh
Q 013952          368 FGDND-----LA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVL  422 (433)
Q Consensus       368 ~~~~~-----~~---~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~  422 (433)
                      .+..+     ..   ...++|.|+++  ++++|+|+|++|++++|+ +.++.+|++++|++||..+
T Consensus       365 ~~~~~~~~~~~~~~~~~~~g~~Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~  430 (451)
T PRK07846        365 VKVQNYGDVAYGWAMEDTTGFVKLIADRDTGRLLGAHIIGPQASTLIQPLIQAMSFGLDAREMARG  430 (451)
T ss_pred             EEEEecCcchhhhhCCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhC
Confidence            22111     11   23468888887  579999999999999885 9999999999999977654

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=3.9e-49  Score=385.99  Aligned_cols=394  Identities=25%  Similarity=0.309  Sum_probs=282.2

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-C---CCCCCCCccccccCCCCCC----CCCCcccccCC----
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-V---APYERPALSKAYLFPEGTA----RLPGFHVCVGS----   71 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~---~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~----   71 (433)
                      ..|||+||||||||++||..|+++|++   |+|+|+. .   +.+..|.+++.++......    ....+......    
T Consensus         3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~---V~liE~~~~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~   79 (462)
T PRK06416          3 FEYDVIVIGAGPGGYVAAIRAAQLGLK---VAIVEKEKLGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGID   79 (462)
T ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCc---EEEEeccccccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccC
Confidence            469999999999999999999999987   9999987 1   3344455555443222110    00000000000    


Q ss_pred             -------------CCCCCCHhHHHhCCcEEEeCceEEEEECCCCEEEeCC-CcEEecceEEEccCCCccccCCCCCCCCC
Q 013952           72 -------------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSAT-GLIFKYQILVIATGSTVLRLTDFGVEGAD  137 (433)
Q Consensus        72 -------------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~-~~~~~~d~lvlAtG~~~~~~~~~~~~g~~  137 (433)
                                   .....+...+++.+++++.+ .+..+++....+...+ +++++||+||||||++|..|+.  ++ ..
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~~~~~~~~v~~~~~~~~~~~d~lViAtGs~p~~~pg--~~-~~  155 (462)
T PRK06416         80 FKKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRG-EAKLVDPNTVRVMTEDGEQTYTAKNIILATGSRPRELPG--IE-ID  155 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEccCCEEEEecCCCcEEEEeCEEEEeCCCCCCCCCC--CC-CC
Confidence                         00011333456689999997 5556665444444323 3679999999999999875432  21 11


Q ss_pred             CCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhc
Q 013952          138 AKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK  217 (433)
Q Consensus       138 ~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~  217 (433)
                      ...+++.   .+...+.    . .+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.+.+++.
T Consensus       156 ~~~v~~~---~~~~~~~----~-~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~~  226 (462)
T PRK06416        156 GRVIWTS---DEALNLD----E-VPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPG-EDKEISKLAERALKKR  226 (462)
T ss_pred             CCeEEcc---hHhhCcc----c-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCc-CCHHHHHHHHHHHHHc
Confidence            2234433   3332221    1 4689999999999999999999999999999999998886 7999999999999999


Q ss_pred             CcEEEcCCeEEEEEecCCCcEEEEEeCCC---cEEECCEEEEcccCccChhhh---hcccccCCCcEEeCCCCCCCCCCe
Q 013952          218 GIKIIKGTVAVGFTTNADGEVKEVKLKDG---RTLEADIVVVGVGGRPLISLF---KGQVAENKGGIETDDFFKTSADDV  291 (433)
Q Consensus       218 GV~v~~~~~v~~i~~~~~g~~~~v~~~~g---~~i~~d~vi~a~G~~p~~~~~---~~~~~~~~g~i~vd~~~~t~~~~v  291 (433)
                      ||+++++++|.+++.++ + ...+.+.++   +++++|.+|+|+|++|++.++   ..++..++|++.||+++||+.|+|
T Consensus       227 gV~i~~~~~V~~i~~~~-~-~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~~g~i~vd~~~~t~~~~V  304 (462)
T PRK06416        227 GIKIKTGAKAKKVEQTD-D-GVTVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTDRGFIEVDEQLRTNVPNI  304 (462)
T ss_pred             CCEEEeCCEEEEEEEeC-C-EEEEEEEeCCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeecCCEEeECCCCccCCCCE
Confidence            99999999999998732 2 244555555   679999999999999999865   345555678899999999999999


Q ss_pred             EEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCCC------cE
Q 013952          292 YAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG------DT  365 (433)
Q Consensus       292 fa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~------~~  365 (433)
                      ||+|||+..+          +.+..|..||+.+|.||.+...   ..++..+|.+....++  +..+|.++.      ..
T Consensus       305 yAiGD~~~~~----------~~~~~A~~~g~~aa~ni~~~~~---~~~~~~~~~~~~~~~~--~a~vG~te~~a~~~g~~  369 (462)
T PRK06416        305 YAIGDIVGGP----------MLAHKASAEGIIAAEAIAGNPH---PIDYRGIPAVTYTHPE--VASVGLTEAKAKEEGFD  369 (462)
T ss_pred             EEeeecCCCc----------chHHHHHHHHHHHHHHHcCCCC---CCCCCCCCeEEECCCc--eEEEeCCHHHHHhcCCC
Confidence            9999999754          5678899999999999997431   2445667776655454  445576652      21


Q ss_pred             EEEcCC-----Ccc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhcccCCCcc
Q 013952          366 VLFGDN-----DLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFA  430 (433)
Q Consensus       366 ~~~~~~-----~~~---~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (433)
                      +.....     ...   ....+|.|+++  ++++|||+|++|++++|+ +.++.+|++++|++||..+..+-++++
T Consensus       370 ~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~  445 (462)
T PRK06416        370 VKVVKFPFAGNGKALALGETDGFVKLIFDKKDGEVLGAHMVGARASELIQEAQLAINWEATPEDLALTIHPHPTLS  445 (462)
T ss_pred             eEEEEEecCcChHhHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCccCCCCHH
Confidence            211111     111   23567888877  589999999999999885 999999999999998887755555544

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=100.00  E-value=3.8e-49  Score=384.68  Aligned_cols=393  Identities=22%  Similarity=0.257  Sum_probs=289.2

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC----CCCCCCCCccccccCCCCC----CCCC--Cccc--------
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE----VAPYERPALSKAYLFPEGT----ARLP--GFHV--------   67 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~----~~~~~~~~~~~~~~~~~~~----~~~~--~~~~--------   67 (433)
                      +|++|||||++|+.||..++++|.+   |+|+|++    .+....|.++|.++.....    .+..  ++..        
T Consensus         2 ~~vvviG~G~~G~~~a~~~~~~g~~---v~~~e~~~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~   78 (466)
T PRK07845          2 TRIVIIGGGPGGYEAALVAAQLGAD---VTVIERDGLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARV   78 (466)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCe---EEEEEccCCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCccccc
Confidence            4899999999999999999999987   9999987    2444455566655433100    0000  0000        


Q ss_pred             c----------cCCCCCCCCHhHHHhCCcEEEeCceEEEEE--CCCCE--EEeCCCc--EEecceEEEccCCCccccCCC
Q 013952           68 C----------VGSGGERLLPEWYKEKGIELILSTEIVRAD--IASKT--LLSATGL--IFKYQILVIATGSTVLRLTDF  131 (433)
Q Consensus        68 ~----------~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~--~~~~~--v~~~~~~--~~~~d~lvlAtG~~~~~~~~~  131 (433)
                      .          ..........+.+++.+++++.+ .+..++  .+.++  |...++.  ++.||+||||||+.|..|+. 
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~~~p~-  156 (466)
T PRK07845         79 DLPAVNARVKALAAAQSADIRARLEREGVRVIAG-RGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPRILPT-  156 (466)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE-EEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCCCCCC-
Confidence            0          00000112345566789999998 455433  33444  4445664  79999999999999976653 


Q ss_pred             CCCCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHH
Q 013952          132 GVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYE  211 (433)
Q Consensus       132 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~  211 (433)
                        ++.....+++..++.+...        .+++++|||+|++|+|+|..|++.|.+|+++++.+++++. +++++.+.+.
T Consensus       157 --~~~~~~~v~~~~~~~~~~~--------~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~l~  225 (466)
T PRK07845        157 --AEPDGERILTWRQLYDLDE--------LPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPG-EDADAAEVLE  225 (466)
T ss_pred             --CCCCCceEEeehhhhcccc--------cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCC-CCHHHHHHHH
Confidence              3333455776555443222        3689999999999999999999999999999999998887 7999999999


Q ss_pred             HHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh---hccccc-CCCcEEeCCCCCCC
Q 013952          212 GYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTS  287 (433)
Q Consensus       212 ~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~  287 (433)
                      +.|++.||++++++++.+++.++++  ..+.+.+|+++++|.+++++|++||+.++   +.++.. ++|+|.||+++||+
T Consensus       226 ~~L~~~gV~i~~~~~v~~v~~~~~~--~~v~~~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd~~~~Ts  303 (466)
T PRK07845        226 EVFARRGMTVLKRSRAESVERTGDG--VVVTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDRVSRTS  303 (466)
T ss_pred             HHHHHCCcEEEcCCEEEEEEEeCCE--EEEEECCCcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeECCCcccC
Confidence            9999999999999999999763332  45677788899999999999999999853   446666 56889999999999


Q ss_pred             CCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCC-----
Q 013952          288 ADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV-----  362 (433)
Q Consensus       288 ~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~-----  362 (433)
                      .|||||+|||++.+          +++..|..||++|+.|+++...  .+..+..+|+.+++.++++.+  |+++     
T Consensus       304 ~~~IyA~GD~~~~~----------~l~~~A~~~g~~aa~~i~g~~~--~~~~~~~~p~~vf~~p~~a~v--Glte~~a~~  369 (466)
T PRK07845        304 VPGIYAAGDCTGVL----------PLASVAAMQGRIAMYHALGEAV--SPLRLKTVASNVFTRPEIATV--GVSQAAIDS  369 (466)
T ss_pred             CCCEEEEeeccCCc----------cchhHHHHHHHHHHHHHcCCCC--CcCCCCCCCEEEeCCCcceee--cCCHHHHHh
Confidence            99999999999764          5678899999999999996431  234577788888776766655  6654     


Q ss_pred             -CcEEEEcC-----CCcc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhcccCCCcc
Q 013952          363 -GDTVLFGD-----NDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFA  430 (433)
Q Consensus       363 -~~~~~~~~-----~~~~---~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (433)
                       +..+....     ....   ..+++|.|+++  ++++|||+|++|++++|+ +.++.+|++++|++||..+.-+-++++
T Consensus       370 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~  449 (466)
T PRK07845        370 GEVPARTVMLPLATNPRAKMSGLRDGFVKLFCRPGTGVVIGGVVVAPRASELILPIALAVQNRLTVDDLAQTFTVYPSLS  449 (466)
T ss_pred             CCCceEEEEEecccCchhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCcCCCCCHH
Confidence             21122211     1111   23568898887  589999999999999885 999999999999998777654444443

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=100.00  E-value=6.4e-49  Score=381.97  Aligned_cols=393  Identities=18%  Similarity=0.208  Sum_probs=280.4

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CC-----CCCCCCccccccCCCCCCCCCCcccccC------C
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VA-----PYERPALSKAYLFPEGTARLPGFHVCVG------S   71 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~   71 (433)
                      ++|||+||||||||++||.+|+++|++   |+|||+. ..     ....|..++.++.....  ...+.....      .
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~la~~g~~---V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~--~~~~~~~~~~~~~~~~   76 (441)
T PRK08010          2 NKYQAVIIGFGKAGKTLAVTLAKAGWR---VALIEQSNAMYGGTCINIGCIPTKTLVHDAQQ--HTDFVRAIQRKNEVVN   76 (441)
T ss_pred             CcCCEEEECCCHhHHHHHHHHHHCCCe---EEEEcCCCCccceeEeeccccchHHHHHHhcc--CCCHHHHHHHHHHHHH
Confidence            369999999999999999999999987   9999986 21     11222223322222110  001100000      0


Q ss_pred             CCCCCC-HhHHHhCCcEEEeCceEEEEECCCCEEEeCCCc-EEecceEEEccCCCccccCCCCCCCCC-CCCEEEecCHH
Q 013952           72 GGERLL-PEWYKEKGIELILSTEIVRADIASKTLLSATGL-IFKYQILVIATGSTVLRLTDFGVEGAD-AKNIFYLREID  148 (433)
Q Consensus        72 ~~~~~~-~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~-~~~~d~lvlAtG~~~~~~~~~~~~g~~-~~~v~~~~~~~  148 (433)
                      ...... ....+..+++++.+ .+..++.....|...++. ++.||+||||||++|..|+   +||.+ ..++++...+.
T Consensus        77 ~~~~~~~~~~~~~~gv~~~~g-~~~~i~~~~~~v~~~~g~~~~~~d~lviATGs~p~~p~---i~G~~~~~~v~~~~~~~  152 (441)
T PRK08010         77 FLRNKNFHNLADMPNIDVIDG-QAEFINNHSLRVHRPEGNLEIHGEKIFINTGAQTVVPP---IPGITTTPGVYDSTGLL  152 (441)
T ss_pred             HHHHhHHHHHhhcCCcEEEEE-EEEEecCCEEEEEeCCCeEEEEeCEEEEcCCCcCCCCC---CCCccCCCCEEChhHhh
Confidence            000001 11222348999887 666677655556666664 6999999999999998887   56653 24565433222


Q ss_pred             HHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEE
Q 013952          149 DADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAV  228 (433)
Q Consensus       149 ~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~  228 (433)
                      +   +    . ..+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.+.+++.||++++++++.
T Consensus       153 ~---~----~-~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~~gV~v~~~~~v~  223 (441)
T PRK08010        153 N---L----K-ELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPR-EDRDIADNIATILRDQGVDIILNAHVE  223 (441)
T ss_pred             c---c----c-ccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCC-cCHHHHHHHHHHHHhCCCEEEeCCEEE
Confidence            1   1    1 14789999999999999999999999999999999988886 689999999999999999999999999


Q ss_pred             EEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh---hccccc-CCCcEEeCCCCCCCCCCeEEcCccccccccc
Q 013952          229 GFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKL  304 (433)
Q Consensus       229 ~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~  304 (433)
                      ++..+ ++ ...+.+.++ ++++|.+++|+|++||++++   ..++.. ++|+|.||+++||+.|||||+|||++.+.  
T Consensus       224 ~i~~~-~~-~v~v~~~~g-~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~--  298 (441)
T PRK08010        224 RISHH-EN-QVQVHSEHA-QLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYLHTTADNIWAMGDVTGGLQ--  298 (441)
T ss_pred             EEEEc-CC-EEEEEEcCC-eEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEECCCcccCCCCEEEeeecCCCcc--
Confidence            99873 23 234555555 68999999999999999754   345666 56889999999999999999999998763  


Q ss_pred             cCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCCC------cEEEEcC-----CCc
Q 013952          305 YREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG------DTVLFGD-----NDL  373 (433)
Q Consensus       305 ~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~------~~~~~~~-----~~~  373 (433)
                              ....|..+|++++.||++... .....+..+|++.+..|+++.+  |+++.      ..+..+.     .+.
T Consensus       299 --------~~~~a~~~~~~~~~~~~g~~~-~~~~~~~~~p~~~~~~p~ia~v--Glte~~a~~~g~~~~~~~~~~~~~~~  367 (441)
T PRK08010        299 --------FTYISLDDYRIVRDELLGEGK-RSTDDRKNVPYSVFMTPPLSRV--GMTEEQARESGADIQVVTLPVAAIPR  367 (441)
T ss_pred             --------chhHHHHHHHHHHHHHcCCCC-cccCccCCCCEEEECCCCceee--eCCHHHHHHcCCCeEEEEEecCcChh
Confidence                    455677899999999986421 1124566788877766666655  76652      2222222     111


Q ss_pred             c---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhcccCCCcc
Q 013952          374 A---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFA  430 (433)
Q Consensus       374 ~---~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (433)
                      .   ....+|.|+++  ++++|+|+|++|++++|+ +.++.+|++++|++|+....-+-++++
T Consensus       368 ~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~  430 (441)
T PRK08010        368 ARVMNDTRGVLKAIVDNKTQRILGASLLCVDSHEMINIVKMVMDAGLPYSILRDQIFTHPSMS  430 (441)
T ss_pred             hhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhccccCCchH
Confidence            1   23456888887  589999999999999885 999999999999998775554444443

>PLN02546 glutathione reductase

Probab=100.00  E-value=2.1e-49  Score=388.87  Aligned_cols=390  Identities=20%  Similarity=0.233  Sum_probs=287.8

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcC----------C----CCCCCCCCccccccCCCCC----CCCCCcc
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISK----------E----VAPYERPALSKAYLFPEGT----ARLPGFH   66 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~----------~----~~~~~~~~~~~~~~~~~~~----~~~~~~~   66 (433)
                      +|||+|||||++|+.||..|+++|.+   |+|+|+          .    .|.+..|..+|.++.....    .....+.
T Consensus        79 ~yDvvVIG~GpaG~~aA~~aa~~G~~---V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g  155 (558)
T PLN02546         79 DFDLFTIGAGSGGVRASRFASNFGAS---AAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFG  155 (558)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCe---EEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcC
Confidence            58999999999999999999999998   999995          2    3555666666665533211    0001111


Q ss_pred             cccCC------------------CCCCCCHhHHHhCCcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCcccc
Q 013952           67 VCVGS------------------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRL  128 (433)
Q Consensus        67 ~~~~~------------------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~  128 (433)
                      .....                  .....+...+++.+++++.+ .+..+++  ++|.+ +++++.||+||||||++|..|
T Consensus       156 ~~~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G-~a~~vd~--~~V~v-~G~~~~~D~LVIATGs~p~~P  231 (558)
T PLN02546        156 WKYETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEG-RGKIVDP--HTVDV-DGKLYTARNILIAVGGRPFIP  231 (558)
T ss_pred             cccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEccC--CEEEE-CCEEEECCEEEEeCCCCCCCC
Confidence            00000                  00122334456689999987 5666654  45655 567899999999999999888


Q ss_pred             CCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHH
Q 013952          129 TDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAA  208 (433)
Q Consensus       129 ~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~  208 (433)
                      +   +||.+  .++   +..++..+.     ..+++++|||+|++|+|+|..|...|.+|+++++.+.+++. +++++.+
T Consensus       232 ~---IpG~~--~v~---~~~~~l~~~-----~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~-~d~~~~~  297 (558)
T PLN02546        232 D---IPGIE--HAI---DSDAALDLP-----SKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRG-FDEEVRD  297 (558)
T ss_pred             C---CCChh--hcc---CHHHHHhcc-----ccCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccc-cCHHHHH
Confidence            7   56643  222   223322221     14789999999999999999999999999999999988875 7999999


Q ss_pred             HHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh---hccccc-CCCcEEeCCCC
Q 013952          209 FYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFF  284 (433)
Q Consensus       209 ~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~  284 (433)
                      .+++.+++.||++++++.+.++....++. ..+.+.+++...+|.+++++|++||++++   ..++.. ++|+|.||+++
T Consensus       298 ~l~~~L~~~GV~i~~~~~v~~i~~~~~g~-v~v~~~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~~l  376 (558)
T PLN02546        298 FVAEQMSLRGIEFHTEESPQAIIKSADGS-LSLKTNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYS  376 (558)
T ss_pred             HHHHHHHHCCcEEEeCCEEEEEEEcCCCE-EEEEECCeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECCCc
Confidence            99999999999999999999997633443 34566665555689999999999999853   346666 46889999999


Q ss_pred             CCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCCCc
Q 013952          285 KTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGD  364 (433)
Q Consensus       285 ~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~  364 (433)
                      ||++|+|||+|||+..+          .++..|..||+++|.||++....  ...|..+|+.++..|+++.+  |+++.+
T Consensus       377 ~Ts~p~IYAaGDv~~~~----------~l~~~A~~~g~~~a~~i~g~~~~--~~~~~~vp~~vft~Peia~V--Glte~e  442 (558)
T PLN02546        377 RTSVPSIWAVGDVTDRI----------NLTPVALMEGGALAKTLFGNEPT--KPDYRAVPSAVFSQPPIGQV--GLTEEQ  442 (558)
T ss_pred             eeCCCCEEEeeccCCCc----------ccHHHHHHHHHHHHHHHcCCCCC--cCCCCCCCEEEeCCchHhhc--cCCHHH
Confidence            99999999999999764          45678999999999999875321  25677899988877777666  665421


Q ss_pred             ------EEEEcCCC--cc------ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhcccCC
Q 013952          365 ------TVLFGDND--LA------SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGL  427 (433)
Q Consensus       365 ------~~~~~~~~--~~------~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  427 (433)
                            .+.....+  +.      ...++|.|+++  ++++|||+|++|+.++|+ +.++.+|++++|++|+..+.-+-+
T Consensus       443 A~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~t~~ILGa~ivG~~a~elI~~~a~ai~~~~t~~dl~~~~~~hP  522 (558)
T PLN02546        443 AIEEYGDVDVFTANFRPLKATLSGLPDRVFMKLIVCAKTNKVLGVHMCGEDAPEIIQGFAVAVKAGLTKADFDATVGIHP  522 (558)
T ss_pred             HHHcCCCeEEEEEecccchhhhhCCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCC
Confidence                  12111111  11      13467898887  689999999999999885 999999999999998776655555


Q ss_pred             Ccc
Q 013952          428 SFA  430 (433)
Q Consensus       428 ~~~  430 (433)
                      +++
T Consensus       523 T~~  525 (558)
T PLN02546        523 TAA  525 (558)
T ss_pred             ChH
Confidence            443

>TIGR02053 MerA mercuric reductase

Probab=100.00  E-value=3.1e-49  Score=386.55  Aligned_cols=387  Identities=22%  Similarity=0.234  Sum_probs=279.6

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC----CCCCCCCCccccccCCCCCCCC---CCccc-------ccC-
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE----VAPYERPALSKAYLFPEGTARL---PGFHV-------CVG-   70 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~----~~~~~~~~~~~~~~~~~~~~~~---~~~~~-------~~~-   70 (433)
                      |||+||||||||++||.+|+++|++   |+|||++    .+....|.+++.++......+.   ..+..       ... 
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~g~~---v~lie~~~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~   77 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELGAS---VAMVERGPLGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGE   77 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCe---EEEEeCCcccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHH
Confidence            7999999999999999999999987   9999986    2233334444443321110000   00000       000 


Q ss_pred             ---------CCCC-CCCHhHHHhCCcEEEeCceEEEEECCCCEEEeCCC-cEEecceEEEccCCCccccCCCCCCCCCCC
Q 013952           71 ---------SGGE-RLLPEWYKEKGIELILSTEIVRADIASKTLLSATG-LIFKYQILVIATGSTVLRLTDFGVEGADAK  139 (433)
Q Consensus        71 ---------~~~~-~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~-~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~  139 (433)
                               .... ......+++.+++++.+. +..+  +.++|.+.++ ..+.||+||||||+.|+.|+   +||.+..
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~-~~~~--~~~~v~v~~g~~~~~~~~lIiATGs~p~~p~---i~G~~~~  151 (463)
T TIGR02053        78 LLEGKREVVEELRHEKYEDVLSSYGVDYLRGR-ARFK--DPKTVKVDLGREVRGAKRFLIATGARPAIPP---IPGLKEA  151 (463)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHhCCcEEEEEE-EEEc--cCCEEEEcCCeEEEEeCEEEEcCCCCCCCCC---CCCcccC
Confidence                     0000 113355677899999874 4333  4677877665 36899999999999998887   5666545


Q ss_pred             CEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCc
Q 013952          140 NIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGI  219 (433)
Q Consensus       140 ~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV  219 (433)
                      ++++..+..   .+    .. .+++++|||+|.+|+|+|..|.+.|.+|+++++.+++++. +++++.+.+++.+++.||
T Consensus       152 ~~~~~~~~~---~~----~~-~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~l~~~l~~~gV  222 (463)
T TIGR02053       152 GYLTSEEAL---AL----DR-IPESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPR-EEPEISAAVEEALAEEGI  222 (463)
T ss_pred             ceECchhhh---Cc----cc-CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCc-cCHHHHHHHHHHHHHcCC
Confidence            555443322   11    11 3689999999999999999999999999999999998886 799999999999999999


Q ss_pred             EEEcCCeEEEEEecCCCcEEEEEeC---CCcEEECCEEEEcccCccChh-h-h-hccccc-CCCcEEeCCCCCCCCCCeE
Q 013952          220 KIIKGTVAVGFTTNADGEVKEVKLK---DGRTLEADIVVVGVGGRPLIS-L-F-KGQVAE-NKGGIETDDFFKTSADDVY  292 (433)
Q Consensus       220 ~v~~~~~v~~i~~~~~g~~~~v~~~---~g~~i~~d~vi~a~G~~p~~~-~-~-~~~~~~-~~g~i~vd~~~~t~~~~vf  292 (433)
                      +++++++|+++..++++  ..+.+.   +++++++|.+++|+|++|+.+ + + ..++.. ++|+|.||++|||+.|+||
T Consensus       223 ~i~~~~~V~~i~~~~~~--~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~Vy  300 (463)
T TIGR02053       223 EVVTSAQVKAVSVRGGG--KIITVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDETLRTSNPGIY  300 (463)
T ss_pred             EEEcCcEEEEEEEcCCE--EEEEEEeCCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeECCCccCCCCCEE
Confidence            99999999999873222  334432   235799999999999999998 3 2 345555 5788999999999999999


Q ss_pred             EcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCCC------cEE
Q 013952          293 AVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG------DTV  366 (433)
Q Consensus       293 a~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~------~~~  366 (433)
                      |+|||+..+          ..+..|..||++||.||++....  ..++..+|.+.+..++++.+  |+++.      ..+
T Consensus       301 AiGD~~~~~----------~~~~~A~~~g~~aa~ni~~~~~~--~~~~~~~p~~~~~~p~~a~v--Glte~~a~~~g~~~  366 (463)
T TIGR02053       301 AAGDVTGGL----------QLEYVAAKEGVVAAENALGGANA--KLDLLVIPRVVFTDPAVASV--GLTEAEAQKAGIEC  366 (463)
T ss_pred             EeeecCCCc----------ccHhHHHHHHHHHHHHhcCCCCC--ccCcCCCCeEEeccCceEEE--eCCHHHHHhcCCCe
Confidence            999999864          46788999999999999875221  24556678776665655555  66642      112


Q ss_pred             EEcCCC-----cc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhcccC
Q 013952          367 LFGDND-----LA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEG  426 (433)
Q Consensus       367 ~~~~~~-----~~---~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  426 (433)
                      ..+..+     ..   ...++|.|+++  ++++|||+|++|++++|+ +.++.+|++++|++|+..+.-+-
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~  437 (463)
T TIGR02053       367 DCRTLPLTNVPRARINRDTRGFIKLVAEPGTGKVLGVQVVAPEAAEVINEAALAIRAGMTVDDLIDTLHPF  437 (463)
T ss_pred             EEEEEecccchHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccC
Confidence            222111     11   23568888887  579999999999999885 99999999999999777764433

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=9.8e-49  Score=381.76  Aligned_cols=394  Identities=23%  Similarity=0.279  Sum_probs=279.1

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcC-C----CCCCCCCCccccccCCCCCCC------CCCcccccCC--
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISK-E----VAPYERPALSKAYLFPEGTAR------LPGFHVCVGS--   71 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~-~----~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~--   71 (433)
                      +|||+||||||||++||.+++++|++   |+|||+ .    .+....|.+++.++......+      ...+......  
T Consensus         3 ~~DvvVIG~GpaG~~AA~~aa~~G~~---V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~   79 (466)
T PRK06115          3 SYDVVIIGGGPGGYNAAIRAGQLGLK---VACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTL   79 (466)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCe---EEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCcc
Confidence            59999999999999999999999988   999996 2    345555666666554332110      0111000000  


Q ss_pred             CCC--------------CCCHhHHHhCCcEEEeCceEEEEECCCC-EEEeCCCc--EEecceEEEccCCCccccCCCCCC
Q 013952           72 GGE--------------RLLPEWYKEKGIELILSTEIVRADIASK-TLLSATGL--IFKYQILVIATGSTVLRLTDFGVE  134 (433)
Q Consensus        72 ~~~--------------~~~~~~~~~~~v~~~~~~~v~~i~~~~~-~v~~~~~~--~~~~d~lvlAtG~~~~~~~~~~~~  134 (433)
                      +..              .....+++..+++++.+..  .++.+.+ .|...+++  +++||+||||||++|..     +|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a--~~~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~-----ip  152 (466)
T PRK06115         80 NLAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWG--RLDGVGKVVVKAEDGSETQLEAKDIVIATGSEPTP-----LP  152 (466)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEE--EEccCCEEEEEcCCCceEEEEeCEEEEeCCCCCCC-----CC
Confidence            000              0112234456899988753  3333332 23344553  69999999999998852     34


Q ss_pred             CCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHH
Q 013952          135 GADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYY  214 (433)
Q Consensus       135 g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l  214 (433)
                      |....+...+. ..++..+    . ..+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+++.+
T Consensus       153 g~~~~~~~~~~-~~~~~~~----~-~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~-~d~~~~~~l~~~l  225 (466)
T PRK06115        153 GVTIDNQRIID-STGALSL----P-EVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPG-TDTETAKTLQKAL  225 (466)
T ss_pred             CCCCCCCeEEC-HHHHhCC----c-cCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCC-CCHHHHHHHHHHH
Confidence            43322322222 2222221    1 14799999999999999999999999999999999998886 7999999999999


Q ss_pred             HhcCcEEEcCCeEEEEEecCCCcEEEEEe-C--CCcEEECCEEEEcccCccChhhh---hcccccCCCcEEeCCCCCCCC
Q 013952          215 ANKGIKIIKGTVAVGFTTNADGEVKEVKL-K--DGRTLEADIVVVGVGGRPLISLF---KGQVAENKGGIETDDFFKTSA  288 (433)
Q Consensus       215 ~~~GV~v~~~~~v~~i~~~~~g~~~~v~~-~--~g~~i~~d~vi~a~G~~p~~~~~---~~~~~~~~g~i~vd~~~~t~~  288 (433)
                      ++.||++++++++.++..++++....+.. .  +++++++|.|++++|++||++.+   ..++..+.+++.||+++||+.
T Consensus       226 ~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G~~vd~~~~Ts~  305 (466)
T PRK06115        226 TKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRGMLANDHHRTSV  305 (466)
T ss_pred             HhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccccccCCcccccceeCCCCEEECCCeecCC
Confidence            99999999999999998633332222322 1  23579999999999999999854   224555545588999999999


Q ss_pred             CCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCC------
Q 013952          289 DDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV------  362 (433)
Q Consensus       289 ~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~------  362 (433)
                      |+|||+|||++.+          .+...|.+||+++|+||++...   ..++..+|.++++.|+++.+  |+++      
T Consensus       306 ~~IyA~GD~~~~~----------~la~~A~~~g~~aa~~i~~~~~---~~~~~~~p~~~~t~p~ia~v--Glte~~a~~~  370 (466)
T PRK06115        306 PGVWVIGDVTSGP----------MLAHKAEDEAVACIERIAGKAG---EVNYGLIPGVIYTRPEVATV--GKTEEQLKAE  370 (466)
T ss_pred             CCEEEeeecCCCc----------ccHHHHHHHHHHHHHHHcCCCC---CCCCCCCCeEEECCcccEEe--eCCHHHHHHC
Confidence            9999999999865          4678899999999999987532   25677899988887777666  6664      


Q ss_pred             CcEEEEcCC-----Ccc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhcccCCCcc
Q 013952          363 GDTVLFGDN-----DLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFA  430 (433)
Q Consensus       363 ~~~~~~~~~-----~~~---~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (433)
                      +..+..+..     ...   ....+|.|+++  ++++|+|+|++|+.++|+ +.++.+|+.++|++||..+.-+-++++
T Consensus       371 g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~dl~~~~~~hPt~~  449 (466)
T PRK06115        371 GRAYKVGKFPFTANSRAKINHETEGFAKILADARTDEVLGVHMVGPSVSEMIGEFCVAMEFSASAEDIALTCHPHPTRS  449 (466)
T ss_pred             CCCEEEEEEecccChhhHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCccCCCChH
Confidence            222222221     111   23568898887  579999999999999885 999999999999997777655555444

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=5.8e-49  Score=384.95  Aligned_cols=399  Identities=24%  Similarity=0.279  Sum_probs=283.6

Q ss_pred             CCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC----CCCCCCCCccccccCCCCCCC----C--CCcc-----
Q 013952            2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE----VAPYERPALSKAYLFPEGTAR----L--PGFH-----   66 (433)
Q Consensus         2 m~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~----~~~~~~~~~~~~~~~~~~~~~----~--~~~~-----   66 (433)
                      |.+.||++||||||||++||.+|+++|++   |+|||+.    .+....|..++.++.......    .  .+..     
T Consensus         1 ~~~~ydvvVIG~GpaG~~aA~~aa~~G~~---v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~   77 (472)
T PRK05976          1 MAKEYDLVIIGGGPGGYVAAIRAGQLGLK---TALVEKGKLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPA   77 (472)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHhCCCe---EEEEEccCCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCc
Confidence            55689999999999999999999999987   9999987    234444555555443211000    0  0000     


Q ss_pred             cccC----------CCCCCCCHhHHHhCCcEEEeCceEEEEECC-------CCEEEeCCC--cEEecceEEEccCCCccc
Q 013952           67 VCVG----------SGGERLLPEWYKEKGIELILSTEIVRADIA-------SKTLLSATG--LIFKYQILVIATGSTVLR  127 (433)
Q Consensus        67 ~~~~----------~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~-------~~~v~~~~~--~~~~~d~lvlAtG~~~~~  127 (433)
                      ..+.          ........+.+++.+++++.+ .+..+++.       ...|.+.++  .+++||+||||||++|..
T Consensus        78 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g-~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~  156 (472)
T PRK05976         78 LDFAKVQERKDGIVDRLTKGVAALLKKGKIDVFHG-IGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPVE  156 (472)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCCC
Confidence            0000          000011223456679999998 66778776       445655666  579999999999999875


Q ss_pred             cCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHH
Q 013952          128 LTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIA  207 (433)
Q Consensus       128 ~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~  207 (433)
                      ++.  ++ .+...+++.   .++..+    .. .+++++|||+|++|+|+|..|++.|.+|+++++.+.+++. +++++.
T Consensus       157 ~p~--~~-~~~~~~~~~---~~~~~~----~~-~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~-~~~~~~  224 (472)
T PRK05976        157 LPG--LP-FDGEYVISS---DEALSL----ET-LPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPT-EDAELS  224 (472)
T ss_pred             CCC--CC-CCCceEEcc---hHhhCc----cc-cCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCc-CCHHHH
Confidence            442  22 222223432   233222    11 3789999999999999999999999999999999988886 789999


Q ss_pred             HHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCC--cEEECCEEEEcccCccChhhhh---cccccCCCcEEeCC
Q 013952          208 AFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG--RTLEADIVVVGVGGRPLISLFK---GQVAENKGGIETDD  282 (433)
Q Consensus       208 ~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g--~~i~~d~vi~a~G~~p~~~~~~---~~~~~~~g~i~vd~  282 (433)
                      +.+.+.+++.||++++++++.++....++.+..+.+.+|  +++++|.+++|+|++|++..+.   .++..++|++.||+
T Consensus       225 ~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~g~i~Vd~  304 (472)
T PRK05976        225 KEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDVEGGFIQIDD  304 (472)
T ss_pred             HHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCCCCCchhcCceecCCEEEECC
Confidence            999999999999999999999997421334444445566  3699999999999999987542   23334678899999


Q ss_pred             CCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCC
Q 013952          283 FFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV  362 (433)
Q Consensus       283 ~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~  362 (433)
                      ++||+.|+|||+|||+..+          +.+..|..+|+.++.||.+...  ...++..+|.+.+..+++  ..+|.++
T Consensus       305 ~l~ts~~~IyAiGD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~--~~~~~~~~p~~~~~~p~~--a~vG~te  370 (472)
T PRK05976        305 FCQTKERHIYAIGDVIGEP----------QLAHVAMAEGEMAAEHIAGKKP--RPFDYAAIPACCYTDPEV--ASVGLTE  370 (472)
T ss_pred             CcccCCCCEEEeeecCCCc----------ccHHHHHHHHHHHHHHHcCCCC--CCCCCCCCCEEEECcCce--EEEeCCH
Confidence            9999999999999998654          4677899999999999986431  124455677766554554  4447664


Q ss_pred             ------CcEEEEcCC-----Ccc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhccc
Q 013952          363 ------GDTVLFGDN-----DLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNE  425 (433)
Q Consensus       363 ------~~~~~~~~~-----~~~---~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  425 (433)
                            +..+.....     ...   ....+|.|+++  ++++|+|+|++|++++|+ +.++.+|++++|++||..+.-+
T Consensus       371 ~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~  450 (472)
T PRK05976        371 EEAKEAGYDVKVGKFPFAANGKALTYGESDGFVKVVADRDTHDILGVQAVGPHVTELISEFALALELGARLWEVAGTIHP  450 (472)
T ss_pred             HHHHHcCCCEEEEEEECCcchhhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCccc
Confidence                  222222211     111   23567888887  579999999999999885 9999999999999988777655


Q ss_pred             CCCcc
Q 013952          426 GLSFA  430 (433)
Q Consensus       426 ~~~~~  430 (433)
                      -++++
T Consensus       451 hPt~~  455 (472)
T PRK05976        451 HPTLS  455 (472)
T ss_pred             CCChH
Confidence            55554

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=9.3e-49  Score=382.91  Aligned_cols=394  Identities=24%  Similarity=0.274  Sum_probs=275.9

Q ss_pred             CCCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC----CCCCCCCCccccccCCCCCC-----CCC--Cccccc
Q 013952            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE----VAPYERPALSKAYLFPEGTA-----RLP--GFHVCV   69 (433)
Q Consensus         1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~----~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~~   69 (433)
                      || .+|||+||||||||++||.+|++.|++   |+|||++    .+....|.+++.++......     ...  +.....
T Consensus         1 ~~-~~~DvvIIG~GpaG~~AA~~aa~~G~~---V~lie~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~~~~   76 (466)
T PRK07818          1 MM-THYDVVVLGAGPGGYVAAIRAAQLGLK---TAVVEKKYWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGISGEV   76 (466)
T ss_pred             CC-CcCCEEEECCCHHHHHHHHHHHhCCCe---EEEEecCCCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCCcCc
Confidence            56 469999999999999999999999987   9999987    23333344454443221100     000  000000


Q ss_pred             CCC--------------CCCCCHhHHHhCCcEEEeCceEEEEECCCCEEEe--CCC--cEEecceEEEccCCCccccCCC
Q 013952           70 GSG--------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLS--ATG--LIFKYQILVIATGSTVLRLTDF  131 (433)
Q Consensus        70 ~~~--------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~--~~~--~~~~~d~lvlAtG~~~~~~~~~  131 (433)
                      ..+              ........++..+++.+.+.. .-+  +.+++.+  .++  ++++||+||||||++|+.|+  
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~-~~~--~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~p--  151 (466)
T PRK07818         77 TFDYGAAFDRSRKVAEGRVKGVHFLMKKNKITEIHGYG-TFT--DANTLEVDLNDGGTETVTFDNAIIATGSSTRLLP--  151 (466)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEE-EEc--CCCEEEEEecCCCeeEEEcCEEEEeCCCCCCCCC--
Confidence            000              000011122335777766532 222  3444433  344  47999999999999987543  


Q ss_pred             CCCCCC-CCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHH
Q 013952          132 GVEGAD-AKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFY  210 (433)
Q Consensus       132 ~~~g~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l  210 (433)
                         +.+ ...+++..+   ..     .....+++++|||+|++|+|+|..|++.|.+|+++++.+++++. +++++.+.+
T Consensus       152 ---g~~~~~~v~~~~~---~~-----~~~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~-~d~~~~~~l  219 (466)
T PRK07818        152 ---GTSLSENVVTYEE---QI-----LSRELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPN-EDAEVSKEI  219 (466)
T ss_pred             ---CCCCCCcEEchHH---Hh-----ccccCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCc-cCHHHHHHH
Confidence               322 134554322   11     11124789999999999999999999999999999999998886 789999999


Q ss_pred             HHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC--CC--cEEECCEEEEcccCccChhhh---hccccc-CCCcEEeCC
Q 013952          211 EGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK--DG--RTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDD  282 (433)
Q Consensus       211 ~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~--~g--~~i~~d~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~  282 (433)
                      ++.|+++||+++++++|+++..  ++....+.+.  +|  +++++|.+++|+|++||++.+   ..++.. ++|+|.||+
T Consensus       220 ~~~l~~~gV~i~~~~~v~~i~~--~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~  297 (466)
T PRK07818        220 AKQYKKLGVKILTGTKVESIDD--NGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDD  297 (466)
T ss_pred             HHHHHHCCCEEEECCEEEEEEE--eCCeEEEEEEecCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCC
Confidence            9999999999999999999986  3322334443  55  479999999999999999853   445665 567899999


Q ss_pred             CCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCC
Q 013952          283 FFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV  362 (433)
Q Consensus       283 ~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~  362 (433)
                      ++||+.|+|||+|||++.+          +++..|..||++||.||++.... ....+..+|.+.+..|+++.+  |+++
T Consensus       298 ~~~Ts~p~IyAiGD~~~~~----------~l~~~A~~~g~~aa~~i~g~~~~-~~~~~~~~p~~~~~~p~~a~v--Glte  364 (466)
T PRK07818        298 YMRTNVPHIYAIGDVTAKL----------QLAHVAEAQGVVAAETIAGAETL-ELGDYRMMPRATFCQPQVASF--GLTE  364 (466)
T ss_pred             CcccCCCCEEEEeecCCCc----------ccHhHHHHHHHHHHHHHcCCCCC-ccCccCCCCeEEECCCCeEEE--eCCH
Confidence            9999999999999998754          56788999999999999864311 112677889888776766655  6654


Q ss_pred             C------cEEEEcCCC-----cc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhccc
Q 013952          363 G------DTVLFGDND-----LA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNE  425 (433)
Q Consensus       363 ~------~~~~~~~~~-----~~---~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  425 (433)
                      .      ..+..+..+     ..   ....+|.|+++  ++++|||+|++|+.++|+ +.++.||++++|++||....-+
T Consensus       365 ~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~~~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~  444 (466)
T PRK07818        365 EQAREEGYDVKVAKFPFTANGKAHGLGDPTGFVKLVADAKYGELLGGHLIGPDVSELLPELTLAQKWDLTAEELARNVHT  444 (466)
T ss_pred             HHHHhCCCcEEEEEEECCccchhhhcCCCCeEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCccC
Confidence            2      222222211     11   23467888887  579999999999999885 9999999999999977765544


Q ss_pred             CCCcc
Q 013952          426 GLSFA  430 (433)
Q Consensus       426 ~~~~~  430 (433)
                      -++|+
T Consensus       445 hPt~~  449 (466)
T PRK07818        445 HPTLS  449 (466)
T ss_pred             CCchH
Confidence            44444

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=100.00  E-value=7.4e-47  Score=387.40  Aligned_cols=381  Identities=24%  Similarity=0.365  Sum_probs=308.2

Q ss_pred             EEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhCCc
Q 013952            8 YVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKGI   86 (433)
Q Consensus         8 vvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   86 (433)
                      |||||||+||+++|.+|++.+....+|+||+++ ..+|.++.++.-+........           ......+++++.++
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~-----------l~~~~~~~~~~~gv   69 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDD-----------ITLNSKDWYEKHGI   69 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHH-----------ccCCCHHHHHHCCC
Confidence            689999999999999999876445679999999 778888777652211111111           12345778889999


Q ss_pred             EEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEE
Q 013952           87 ELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAV  166 (433)
Q Consensus        87 ~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~  166 (433)
                      +++.++.|+.|+++.++|.+.++.++.||+||||||+.|+.|+   +||.+.++++.++++.++..+.+.+.  .+++++
T Consensus        70 ~~~~g~~V~~Id~~~k~V~~~~g~~~~yD~LVlATGs~p~~p~---ipG~~~~~v~~~rt~~d~~~i~~~~~--~~k~vv  144 (785)
T TIGR02374        70 TLYTGETVIQIDTDQKQVITDAGRTLSYDKLILATGSYPFILP---IPGADKKGVYVFRTIEDLDAIMAMAQ--RFKKAA  144 (785)
T ss_pred             EEEcCCeEEEEECCCCEEEECCCcEeeCCEEEECCCCCcCCCC---CCCCCCCCEEEeCCHHHHHHHHHHhh--cCCeEE
Confidence            9999999999999999999999989999999999999998887   68877788999999999988887765  478999


Q ss_pred             EECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCC
Q 013952          167 VVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG  246 (433)
Q Consensus       167 ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g  246 (433)
                      |||+|++|+|+|..|.+.|.+|+++++.+.+++..+++...+.+.+.+++.||++++++.+.++..  ++....+.+.+|
T Consensus       145 VVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~~~~v~~i~~--~~~~~~v~~~dG  222 (785)
T TIGR02374       145 VIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDTVEIVG--ATKADRIRFKDG  222 (785)
T ss_pred             EECCCHHHHHHHHHHHhcCCeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEEeCCceEEEEc--CCceEEEEECCC
Confidence            999999999999999999999999999999887778999999999999999999999999999976  556678889999


Q ss_pred             cEEECCEEEEcccCccChhhhh-cccccCCCcEEeCCCCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHH
Q 013952          247 RTLEADIVVVGVGGRPLISLFK-GQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAV  325 (433)
Q Consensus       247 ~~i~~d~vi~a~G~~p~~~~~~-~~~~~~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa  325 (433)
                      +++++|.||+++|.+|++.++. .++..+ ++|.||++|||+.|+|||+|||+..+...+      ..+..|..||+++|
T Consensus       223 ~~i~~D~Vi~a~G~~Pn~~la~~~gl~~~-ggI~Vd~~~~Ts~p~IyA~GD~a~~~~~~~------gl~~~a~~qa~vaA  295 (785)
T TIGR02374       223 SSLEADLIVMAAGIRPNDELAVSAGIKVN-RGIIVNDSMQTSDPDIYAVGECAEHNGRVY------GLVAPLYEQAKVLA  295 (785)
T ss_pred             CEEEcCEEEECCCCCcCcHHHHhcCCccC-CCEEECCCcccCCCCEEEeeecceeCCccc------ccHHHHHHHHHHHH
Confidence            9999999999999999999875 355555 789999999999999999999998765433      46788999999999


Q ss_pred             HHHhccCCCCCccCCCCCC-eEEEeecccceEEecCCCCc----EEEEcCCCccccCCcEEEEEEeCCEEEEEEEecCCh
Q 013952          326 KTIMATEGGKTVTGYDYLP-YFYSRAFDLSWQFYGDNVGD----TVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTP  400 (433)
Q Consensus       326 ~~i~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~g~~~  400 (433)
                      .||.+...    .+|...+ ......+++.+...|.....    .+.+.+..    ...|.++++++++|+|++++|+ .
T Consensus       296 ~ni~g~~~----~~~~~~~~~~~lk~~g~~v~s~G~~~~~~~~~~~~~~d~~----~~~y~kl~~~~~rLlGavlvgd-~  366 (785)
T TIGR02374       296 DHICGVEC----EEYEGSDLSAKLKLLGVDVWSAGDAQETERTTSIKIYDEQ----KGIYKKLVLSDDKLLGAVLFGD-T  366 (785)
T ss_pred             HHhcCCCC----cCCCCCccceEEEECCcceEecccCCCCCCcEEEEEEcCC----CCEEEEEEEECCEEEEEEEECC-H
Confidence            99987531    2344333 33455677777777754311    22222222    4568899999999999999984 4


Q ss_pred             HHHHHHHHHHHcCCCCCChhhh
Q 013952          401 EENKAIAKVARVQPSVESLDVL  422 (433)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~  422 (433)
                      .+...+..++.++.++.+...|
T Consensus       367 ~~~~~L~~li~~~~~l~~~~~l  388 (785)
T TIGR02374       367 SDYGRLLDMVLKQADISEDPAI  388 (785)
T ss_pred             HHHHHHHHHHHcCCCCCcChhh
Confidence            5778889999999877653333

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=100.00  E-value=7.9e-47  Score=360.12  Aligned_cols=360  Identities=21%  Similarity=0.323  Sum_probs=283.2

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      ++|||||||+||+++|..|++.+. ..+|+||+++ ..+|.++.++..+........+          ......+++++.
T Consensus         3 ~~vvIiG~G~AG~~~a~~lr~~~~-~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~----------~~~~~~~~~~~~   71 (377)
T PRK04965          3 NGIVIIGSGFAARQLVKNIRKQDA-HIPITLITADSGDEYNKPDLSHVFSQGQRADDL----------TRQSAGEFAEQF   71 (377)
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCc-CCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHh----------hcCCHHHHHHhC
Confidence            589999999999999999998763 5779999999 7788888765543321111111          011245667788


Q ss_pred             CcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCCc
Q 013952           85 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGK  164 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  164 (433)
                      +++++.++.|..++++.+.+.+ ++.++.||+||||||+.|..|+   ++|.+.  +++++++.++..+...+.  .+++
T Consensus        72 gv~~~~~~~V~~id~~~~~v~~-~~~~~~yd~LVlATG~~~~~p~---i~G~~~--v~~~~~~~~~~~~~~~~~--~~~~  143 (377)
T PRK04965         72 NLRLFPHTWVTDIDAEAQVVKS-QGNQWQYDKLVLATGASAFVPP---IPGREL--MLTLNSQQEYRAAETQLR--DAQR  143 (377)
T ss_pred             CCEEECCCEEEEEECCCCEEEE-CCeEEeCCEEEECCCCCCCCCC---CCCCce--EEEECCHHHHHHHHHHhh--cCCe
Confidence            9999998899999998888876 5668999999999999998777   576543  888888888877776664  4789


Q ss_pred             EEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC
Q 013952          165 AVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK  244 (433)
Q Consensus       165 v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~  244 (433)
                      ++|||+|++|+|+|..|.+.|.+|+++++.+.+++..+++++.+.+.+.+++.||++++++++.++..  ++....+.+.
T Consensus       144 vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~--~~~~~~v~~~  221 (377)
T PRK04965        144 VLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEK--TDSGIRATLD  221 (377)
T ss_pred             EEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEEECCeEEEEEc--cCCEEEEEEc
Confidence            99999999999999999999999999999998887767899999999999999999999999999986  3333567888


Q ss_pred             CCcEEECCEEEEcccCccChhhhhc-ccccCCCcEEeCCCCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHH
Q 013952          245 DGRTLEADIVVVGVGGRPLISLFKG-QVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQ  323 (433)
Q Consensus       245 ~g~~i~~d~vi~a~G~~p~~~~~~~-~~~~~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~  323 (433)
                      +|+++++|.+|+|+|.+|+..+++. ++..++ ++.||++|||+.|||||+|||+..+..      ..+.+..|..||+.
T Consensus       222 ~g~~i~~D~vI~a~G~~p~~~l~~~~gl~~~~-gi~vd~~l~ts~~~VyA~GD~a~~~~~------~~~~~~~a~~~g~~  294 (377)
T PRK04965        222 SGRSIEVDAVIAAAGLRPNTALARRAGLAVNR-GIVVDSYLQTSAPDIYALGDCAEINGQ------VLPFLQPIQLSAMA  294 (377)
T ss_pred             CCcEEECCEEEECcCCCcchHHHHHCCCCcCC-CEEECCCcccCCCCEEEeeecEeECCc------eeehHHHHHHHHHH
Confidence            9999999999999999999988743 565555 499999999999999999999986532      12457778999999


Q ss_pred             HHHHHhccCCCCCccCCCCCCe-EEEeecccceEEecCCCCcE--EEEcCCCccccCCcEEEEEEeCCEEEEEEEecCCh
Q 013952          324 AVKTIMATEGGKTVTGYDYLPY-FYSRAFDLSWQFYGDNVGDT--VLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTP  400 (433)
Q Consensus       324 aa~~i~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~g~~~  400 (433)
                      +|+||.+..     ..|...+. .....+++.+..+|...++.  ....+.    ....|.++++++|+|+|+.++|+..
T Consensus       295 ~a~n~~g~~-----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~g~~~~g~~~  365 (377)
T PRK04965        295 LAKNLLGQN-----TPLKLPAMLVKVKTPELPLQLAGETQRQDLRWQINAE----SQGMVAKGVDEAGQLRAFVVSEDRM  365 (377)
T ss_pred             HHHHhcCCC-----cccccCCccEEEecCceeeEECCCCCCCCceEEEEeC----CCCeEEEEEccCCcEEEEEEEChhH
Confidence            999999864     34444333 33456777777778764322  211111    1456788888999999999999765


Q ss_pred             HH
Q 013952          401 EE  402 (433)
Q Consensus       401 ~~  402 (433)
                      ..
T Consensus       366 ~~  367 (377)
T PRK04965        366 KE  367 (377)
T ss_pred             HH
Confidence            43

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=4.5e-48  Score=376.96  Aligned_cols=392  Identities=19%  Similarity=0.225  Sum_probs=281.6

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC----CCCCCCCCccccccCCCCC----C--CCCCcccccCC---C-
Q 013952            7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKE----VAPYERPALSKAYLFPEGT----A--RLPGFHVCVGS---G-   72 (433)
Q Consensus         7 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~----~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~---~-   72 (433)
                      +|+||||||||++||.+|++.|.+   |+|||++    .+.+..|..+|.++.....    .  ...+.......   + 
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~~---V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~   78 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGKN---VTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDW   78 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCc---EEEEECCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCH
Confidence            799999999999999999999987   9999997    2455556666665432110    0  00011000000   0 


Q ss_pred             -------------CCCCCHhHHHhCCcEEEeCceEEEEECCCCEEEeCCC-cEEecceEEEccCCCccccCCCCCCCCCC
Q 013952           73 -------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSATG-LIFKYQILVIATGSTVLRLTDFGVEGADA  138 (433)
Q Consensus        73 -------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~-~~~~~d~lvlAtG~~~~~~~~~~~~g~~~  138 (433)
                                   ........++..+++++.+ ++..++.....|...++ ++++||+||||||++|+.|+   +++.+.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~a~~~~~~~v~v~~~~~~~~~~~d~lviATGs~p~~~p---~~~~~~  154 (458)
T PRK06912         79 KQMQARKSQIVTQLVQGIQYLMKKNKIKVIQG-KASFETDHRVRVEYGDKEEVVDAEQFIIAAGSEPTELP---FAPFDG  154 (458)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEE-EEEEccCCEEEEeeCCCcEEEECCEEEEeCCCCCCCCC---CCCCCC
Confidence                         0011223345578999887 55545543334444444 47999999999999998776   345444


Q ss_pred             CCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcC
Q 013952          139 KNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKG  218 (433)
Q Consensus       139 ~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~G  218 (433)
                      ..+++..   ++..+.    . .+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.+.+++.|
T Consensus       155 ~~v~~~~---~~~~~~----~-~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~-~d~e~~~~l~~~L~~~G  225 (458)
T PRK06912        155 KWIINSK---HAMSLP----S-IPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPG-EDEDIAHILREKLENDG  225 (458)
T ss_pred             CeEEcch---HHhCcc----c-cCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCcc-ccHHHHHHHHHHHHHCC
Confidence            4455433   222221    1 3789999999999999999999999999999999998886 68999999999999999


Q ss_pred             cEEEcCCeEEEEEecCCCcEEEEEeCCC-cEEECCEEEEcccCccChhhh---hcccccCCCcEEeCCCCCCCCCCeEEc
Q 013952          219 IKIIKGTVAVGFTTNADGEVKEVKLKDG-RTLEADIVVVGVGGRPLISLF---KGQVAENKGGIETDDFFKTSADDVYAV  294 (433)
Q Consensus       219 V~v~~~~~v~~i~~~~~g~~~~v~~~~g-~~i~~d~vi~a~G~~p~~~~~---~~~~~~~~g~i~vd~~~~t~~~~vfa~  294 (433)
                      |++++++++.+++.  ++....+...++ .++++|.+++|+|++|+.+.+   ..++..+++++.||+++||+.|||||+
T Consensus       226 I~i~~~~~V~~i~~--~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~gi~Vd~~~~ts~~~VyA~  303 (458)
T PRK06912        226 VKIFTGAALKGLNS--YKKQALFEYEGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKGISVNEHMQTNVPHIYAC  303 (458)
T ss_pred             CEEEECCEEEEEEE--cCCEEEEEECCceEEEEeCEEEEecCCccCCCCCCchhcCceecCCCEEeCCCeecCCCCEEEE
Confidence            99999999999976  332233333222 369999999999999998754   335555555699999999999999999


Q ss_pred             CccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCCC------cEEEE
Q 013952          295 GDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG------DTVLF  368 (433)
Q Consensus       295 Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~------~~~~~  368 (433)
                      |||+..+          +.+..|..+|++||.++.+...   ..++..+|.+++..++++.+  |+++.      ..+..
T Consensus       304 GD~~~~~----------~la~~A~~~g~~aa~~~~g~~~---~~~~~~~p~~v~~~p~~a~v--Glte~~a~~~g~~~~~  368 (458)
T PRK06912        304 GDVIGGI----------QLAHVAFHEGTTAALHASGEDV---KVNYHAVPRCIYTSPEIASV--GLTEKQAREQYGDIRI  368 (458)
T ss_pred             eecCCCc----------ccHHHHHHHHHHHHHHHcCCCC---CCCcCCCCeEEecCchhEEe--eCCHHHHHHCCCCeEE
Confidence            9999754          5677899999999999986432   24567788887666666555  66542      11222


Q ss_pred             cCCC--c------cccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhcccCCCccc
Q 013952          369 GDND--L------ASATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFAS  431 (433)
Q Consensus       369 ~~~~--~------~~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (433)
                      +..+  .      ...+.+|.|+++  ++++|||+|++|++++|+ +.++.+|++++|++|+..+..+-++|++
T Consensus       369 ~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e  442 (458)
T PRK06912        369 GEFPFTANGKALIIGEQTGKVKVIVEPKYQEIVGISIIGPRATELIGQGTVMIHTEVTADIMEDFIAAHPTLSE  442 (458)
T ss_pred             EEEecCcchhHhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCCHHH
Confidence            2111  1      123567888887  579999999999999885 9999999999999988877666666554

>PRK13748 putative mercuric reductase; Provisional

Probab=100.00  E-value=8.7e-48  Score=385.51  Aligned_cols=392  Identities=19%  Similarity=0.205  Sum_probs=278.1

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC----CCCCCCCCccccccCCCCC------CCC-CCcccccCCC
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE----VAPYERPALSKAYLFPEGT------ARL-PGFHVCVGSG   72 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~----~~~~~~~~~~~~~~~~~~~------~~~-~~~~~~~~~~   72 (433)
                      .+|||+||||||+|++||..|++.|++   |+|||++    .+.+..|..++.++.....      ..+ .++.......
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~---v~lie~~~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~  173 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVEQGAR---VTLIERGTIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTI  173 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCe---EEEEecCcceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCcc
Confidence            469999999999999999999999987   9999987    2334445555544322110      000 1111000000


Q ss_pred             CCC----------------CCHhHHHhC-CcEEEeCceEEEEECCCCEEEeCCCc--EEecceEEEccCCCccccCCCCC
Q 013952           73 GER----------------LLPEWYKEK-GIELILSTEIVRADIASKTLLSATGL--IFKYQILVIATGSTVLRLTDFGV  133 (433)
Q Consensus        73 ~~~----------------~~~~~~~~~-~v~~~~~~~v~~i~~~~~~v~~~~~~--~~~~d~lvlAtG~~~~~~~~~~~  133 (433)
                      ...                .....+... +++++.+ .+..++.....|...++.  +++||+||||||++|..|+   +
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~---i  249 (561)
T PRK13748        174 DRSRLLAQQQARVDELRHAKYEGILDGNPAITVLHG-EARFKDDQTLIVRLNDGGERVVAFDRCLIATGASPAVPP---I  249 (561)
T ss_pred             CHHHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEE-EEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCC---C
Confidence            000                112223444 7899987 566666554455555553  6999999999999998887   5


Q ss_pred             CCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHH
Q 013952          134 EGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGY  213 (433)
Q Consensus       134 ~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~  213 (433)
                      ||.+...+++  +.. .  +.   ....+++++|||+|++|+|+|..|.+.|.+|+++.+. .+++. +++++.+.+.+.
T Consensus       250 ~g~~~~~~~~--~~~-~--~~---~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~-~~l~~-~d~~~~~~l~~~  319 (561)
T PRK13748        250 PGLKETPYWT--STE-A--LV---SDTIPERLAVIGSSVVALELAQAFARLGSKVTILARS-TLFFR-EDPAIGEAVTAA  319 (561)
T ss_pred             CCCCccceEc--cHH-H--hh---cccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecC-ccccc-cCHHHHHHHHHH
Confidence            6654333332  211 1  11   1124789999999999999999999999999999885 45554 799999999999


Q ss_pred             HHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh---hccccc-CCCcEEeCCCCCCCCC
Q 013952          214 YANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSAD  289 (433)
Q Consensus       214 l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~  289 (433)
                      +++.||++++++.+.+++.+ ++ ...+.+.++ ++++|.+++|+|++||+.++   ..++.. ++|+|.||+++||+.|
T Consensus       320 l~~~gI~i~~~~~v~~i~~~-~~-~~~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~~  396 (561)
T PRK13748        320 FRAEGIEVLEHTQASQVAHV-DG-EFVLTTGHG-ELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQGMRTSVP  396 (561)
T ss_pred             HHHCCCEEEcCCEEEEEEec-CC-EEEEEecCC-eEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECCCcccCCC
Confidence            99999999999999999862 33 234555555 69999999999999999854   345666 5688999999999999


Q ss_pred             CeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCC------C
Q 013952          290 DVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV------G  363 (433)
Q Consensus       290 ~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~------~  363 (433)
                      ||||+|||++.+          .....|..+|++||.||++...   ..++..+|.+.+..++++.+  |+++      +
T Consensus       397 ~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~---~~~~~~~p~~~~~~p~~a~v--Glte~~a~~~g  461 (561)
T PRK13748        397 HIYAAGDCTDQP----------QFVYVAAAAGTRAAINMTGGDA---ALDLTAMPAVVFTDPQVATV--GYSEAEAHHDG  461 (561)
T ss_pred             CEEEeeecCCCc----------cchhHHHHHHHHHHHHHcCCCc---ccCCCCCCeEEEccCCceee--eCCHHHHHHcC
Confidence            999999999865          3456688899999999986432   25566678766555555544  7665      2


Q ss_pred             cEEEEcCC-----Ccc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhcccCCCcc
Q 013952          364 DTVLFGDN-----DLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFA  430 (433)
Q Consensus       364 ~~~~~~~~-----~~~---~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (433)
                      ..+.....     ...   ....+|.|+++  ++++|||+|++|+.++++ +.++.+|++++|++||..+.-+-++++
T Consensus       462 ~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~  539 (561)
T PRK13748        462 IETDSRTLTLDNVPRALANFDTRGFIKLVIEEGSGRLIGVQAVAPEAGELIQTAALAIRNRMTVQELADQLFPYLTMV  539 (561)
T ss_pred             CCeEEEEEecccCchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcccccCCchH
Confidence            11211111     111   23578999888  489999999999999885 999999999999996665554444443

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=100.00  E-value=9.5e-48  Score=373.45  Aligned_cols=390  Identities=17%  Similarity=0.190  Sum_probs=275.3

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CC-----CCCCCCccccccCCCCCCCCCCcccccC------CC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VA-----PYERPALSKAYLFPEGTARLPGFHVCVG------SG   72 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~   72 (433)
                      +|||+||||||||++||..|++.|++   |+|||++ ..     ....|..++.++.....  ...+.....      ..
T Consensus         3 ~~dvvVIG~GpaG~~aA~~l~~~g~~---V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~--~~~~~~~~~~~~~~~~~   77 (438)
T PRK07251          3 TYDLIVIGFGKAGKTLAAKLASAGKK---VALVEESKAMYGGTCINIGCIPTKTLLVAAEK--NLSFEQVMATKNTVTSR   77 (438)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCE---EEEEecCCcccceeeecCccccchHhhhhhhc--CCCHHHHHHHHHHHHHH
Confidence            69999999999999999999999987   9999997 21     11122233333322110  001100000      00


Q ss_pred             CCCCCHhHHHhCCcEEEeCceEEEEECCCCEEEeCC---CcEEecceEEEccCCCccccCCCCCCCCC-CCCEEEecCHH
Q 013952           73 GERLLPEWYKEKGIELILSTEIVRADIASKTLLSAT---GLIFKYQILVIATGSTVLRLTDFGVEGAD-AKNIFYLREID  148 (433)
Q Consensus        73 ~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~---~~~~~~d~lvlAtG~~~~~~~~~~~~g~~-~~~v~~~~~~~  148 (433)
                      ......+.+.+.+++++.+.. ..+  ++++|.+.+   ..++.||+||||||++|+.|+   +||.. ..++++..++.
T Consensus        78 ~~~~~~~~~~~~gV~~~~g~~-~~~--~~~~v~v~~~~~~~~~~~d~vViATGs~~~~p~---i~G~~~~~~v~~~~~~~  151 (438)
T PRK07251         78 LRGKNYAMLAGSGVDLYDAEA-HFV--SNKVIEVQAGDEKIELTAETIVINTGAVSNVLP---IPGLADSKHVYDSTGIQ  151 (438)
T ss_pred             HHHHHHHHHHhCCCEEEEEEE-EEc--cCCEEEEeeCCCcEEEEcCEEEEeCCCCCCCCC---CCCcCCCCcEEchHHHh
Confidence            011123456678999998743 322  456665543   247999999999999998887   56643 34566543322


Q ss_pred             HHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEE
Q 013952          149 DADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAV  228 (433)
Q Consensus       149 ~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~  228 (433)
                         .+.    . .+++++|||+|++|+|+|..|++.|.+|+++++.+.+++. .++++.+.+.+.+++.||++++++++.
T Consensus       152 ---~~~----~-~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~~~~~l~~~GI~i~~~~~V~  222 (438)
T PRK07251        152 ---SLE----T-LPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR-EEPSVAALAKQYMEEDGITFLLNAHTT  222 (438)
T ss_pred             ---cch----h-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC-CCHHHHHHHHHHHHHcCCEEEcCCEEE
Confidence               221    1 4789999999999999999999999999999999998886 689999999999999999999999999


Q ss_pred             EEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhhh---ccccc-CCCcEEeCCCCCCCCCCeEEcCccccccccc
Q 013952          229 GFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFK---GQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKL  304 (433)
Q Consensus       229 ~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~~---~~~~~-~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~  304 (433)
                      +++. +++. ..+. .+++++++|.+++|+|++|+.+.+.   .++.. ++|++.||+++||+.|||||+|||++.+.  
T Consensus       223 ~i~~-~~~~-v~v~-~~g~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd~~~~t~~~~IyaiGD~~~~~~--  297 (438)
T PRK07251        223 EVKN-DGDQ-VLVV-TEDETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDDYCQTSVPGVFAVGDVNGGPQ--  297 (438)
T ss_pred             EEEe-cCCE-EEEE-ECCeEEEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEECCCcccCCCCEEEeeecCCCcc--
Confidence            9986 2222 2333 3566899999999999999987642   34444 56889999999999999999999997653  


Q ss_pred             cCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCCC------cEEEE-----cCCCc
Q 013952          305 YREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG------DTVLF-----GDNDL  373 (433)
Q Consensus       305 ~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~------~~~~~-----~~~~~  373 (433)
                              ....|..+|+.++.++.+... .....+..+|+..+..++++  .+|+++.      ..+..     ...+.
T Consensus       298 --------~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~p~ia--~vGlte~~a~~~g~~~~~~~~~~~~~~~  366 (438)
T PRK07251        298 --------FTYISLDDFRIVFGYLTGDGS-YTLEDRGNVPTTMFITPPLS--QVGLTEKEAKEAGLPYAVKELLVAAMPR  366 (438)
T ss_pred             --------cHhHHHHHHHHHHHHHcCCCC-ccccccCCCCEEEECCCceE--eeeCCHHHHHhcCCCeEEEEEECCcchh
Confidence                    455677899999999886532 12245567887766545544  4476642      11222     11111


Q ss_pred             c---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhcccCCCcc
Q 013952          374 A---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFA  430 (433)
Q Consensus       374 ~---~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (433)
                      .   ....+|.|+++  ++++|||+|++|++++|+ +.++.+|++++|++|+....-+-++++
T Consensus       367 ~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~  429 (438)
T PRK07251        367 AHVNNDLRGAFKVVVNTETKEILGATLFGEGSQEIINLITMAMDNKIPYTYFKKQIFTHPTMA  429 (438)
T ss_pred             hhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCChH
Confidence            1   23456888887  579999999999999885 999999999999987765444444433

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=1.1e-47  Score=375.49  Aligned_cols=395  Identities=22%  Similarity=0.277  Sum_probs=278.4

Q ss_pred             CCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcC-------C----CCCCCCCCccccccCCCCC----C---CCCC
Q 013952            3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISK-------E----VAPYERPALSKAYLFPEGT----A---RLPG   64 (433)
Q Consensus         3 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~-------~----~~~~~~~~~~~~~~~~~~~----~---~~~~   64 (433)
                      ...||++||||||||++||.++++.|.+   |+|||+       .    .+....|..++.++.....    .   ...+
T Consensus         2 ~~~~DviIIG~G~aG~~aA~~~~~~g~~---v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G   78 (475)
T PRK06327          2 SKQFDVVVIGAGPGGYVAAIRAAQLGLK---VACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHG   78 (475)
T ss_pred             CcceeEEEECCCHHHHHHHHHHHhCCCe---EEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcC
Confidence            4579999999999999999999999987   999998       2    1222222233332211100    0   0000


Q ss_pred             cccc-cCCC--------------CCCCCHhHHHhCCcEEEeCceEEEEEC--CCCEEEeC--CCcEEecceEEEccCCCc
Q 013952           65 FHVC-VGSG--------------GERLLPEWYKEKGIELILSTEIVRADI--ASKTLLSA--TGLIFKYQILVIATGSTV  125 (433)
Q Consensus        65 ~~~~-~~~~--------------~~~~~~~~~~~~~v~~~~~~~v~~i~~--~~~~v~~~--~~~~~~~d~lvlAtG~~~  125 (433)
                      .... ...+              ........++..+++++.+ .+..++.  +.++|.+.  ++++++||+||||||+.|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs~p  157 (475)
T PRK06327         79 IHVDGVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKG-RGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSEP  157 (475)
T ss_pred             ccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCCCC
Confidence            0000 0000              0011223445578999987 4555553  24566654  345799999999999999


Q ss_pred             cccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHH
Q 013952          126 LRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTAD  205 (433)
Q Consensus       126 ~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~  205 (433)
                      +.++.  ++ .+...+++..   +...+    . ..+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. ++++
T Consensus       158 ~~~p~--~~-~~~~~~~~~~---~~~~~----~-~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~  225 (475)
T PRK06327        158 RHLPG--VP-FDNKIILDNT---GALNF----T-EVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAA-ADEQ  225 (475)
T ss_pred             CCCCC--CC-CCCceEECcH---HHhcc----c-ccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCc-CCHH
Confidence            75543  22 2223344322   22221    1 14789999999999999999999999999999999988876 7899


Q ss_pred             HHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCC--C--cEEECCEEEEcccCccChhhh---hccccc-CCCc
Q 013952          206 IAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD--G--RTLEADIVVVGVGGRPLISLF---KGQVAE-NKGG  277 (433)
Q Consensus       206 ~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~--g--~~i~~d~vi~a~G~~p~~~~~---~~~~~~-~~g~  277 (433)
                      +.+.+.+.+++.||+++++++|.+++.++++  ..+.+.+  |  +++++|.+++++|++|++..+   ..++.. ++|+
T Consensus       226 ~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~--v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~  303 (475)
T PRK06327        226 VAKEAAKAFTKQGLDIHLGVKIGEIKTGGKG--VSVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGF  303 (475)
T ss_pred             HHHHHHHHHHHcCcEEEeCcEEEEEEEcCCE--EEEEEEeCCCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCe
Confidence            9999999999999999999999999873222  3455443  3  469999999999999999843   234555 5688


Q ss_pred             EEeCCCCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEE
Q 013952          278 IETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQF  357 (433)
Q Consensus       278 i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  357 (433)
                      |.||+++||+.|+|||+|||+..+          ..+..|..||+.||.||.+...   ...|..+|+.++..|+++.+ 
T Consensus       304 i~vd~~~~Ts~~~VyA~GD~~~~~----------~~~~~A~~~G~~aa~~i~g~~~---~~~~~~~p~~~~~~pe~a~v-  369 (475)
T PRK06327        304 IPVDDHCRTNVPNVYAIGDVVRGP----------MLAHKAEEEGVAVAERIAGQKG---HIDYNTIPWVIYTSPEIAWV-  369 (475)
T ss_pred             EeECCCCccCCCCEEEEEeccCCc----------chHHHHHHHHHHHHHHHcCCCC---CCCCCCCCeEEeCCcceEEE-
Confidence            999999999999999999999754          4577899999999999986532   14677889888665665554 


Q ss_pred             ecCCCC------cEEEEcCCCcc--------ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChh
Q 013952          358 YGDNVG------DTVLFGDNDLA--------SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLD  420 (433)
Q Consensus       358 ~g~~~~------~~~~~~~~~~~--------~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~  420 (433)
                       |+++.      ..+..+..+..        ....+|.|+++  ++++|||+|++|++++|+ +.++.+|++++|++||.
T Consensus       370 -Glte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~  448 (475)
T PRK06327        370 -GKTEQQLKAEGVEYKAGKFPFMANGRALAMGEPDGFVKIIADAKTDEILGVHVIGPNASELIAEAVVAMEFKASSEDIA  448 (475)
T ss_pred             -eCCHHHHHHcCCCEEEEEEcccccchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHh
Confidence             76652      22222222111        24568898888  589999999999999885 99999999999999888


Q ss_pred             hhcccCCCcc
Q 013952          421 VLKNEGLSFA  430 (433)
Q Consensus       421 ~~~~~~~~~~  430 (433)
                      .+.-+-++++
T Consensus       449 ~~~~~hPt~~  458 (475)
T PRK06327        449 RICHAHPTLS  458 (475)
T ss_pred             cCCcCCCChH
Confidence            7755555544

>TIGR03452 mycothione_red mycothione reductase

Probab=100.00  E-value=1.2e-47  Score=372.47  Aligned_cols=382  Identities=18%  Similarity=0.226  Sum_probs=279.2

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC----CCCCCCCCccccccCCCCC----CCCCCcccccC------
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE----VAPYERPALSKAYLFPEGT----ARLPGFHVCVG------   70 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~----~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~------   70 (433)
                      +||++|||+||+|..||.  +..|.+   |+|||++    .+.+..|.++|.++.....    .+...+.....      
T Consensus         2 ~yD~vvIG~G~~g~~aa~--~~~g~~---V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~   76 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIPDP--RFADKR---IAIVEKGTFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDSVRW   76 (452)
T ss_pred             CcCEEEECCCHHHHHHHH--HHCCCe---EEEEeCCCCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCCCCccCH
Confidence            599999999999988864  446887   9999986    3667777787776533211    00000000000      


Q ss_pred             --------C----CCCCCCHhHH---HhCCcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCCCCC
Q 013952           71 --------S----GGERLLPEWY---KEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEG  135 (433)
Q Consensus        71 --------~----~~~~~~~~~~---~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g  135 (433)
                              .    ..........   ++.+++++.+..++.   +.++|.+.++++++||+||||||++|..|+.   .+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~---~~~~V~~~~g~~~~~d~lIiATGs~p~~p~~---~~  150 (452)
T TIGR03452        77 PDIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFV---GPRTLRTGDGEEITGDQIVIAAGSRPYIPPA---IA  150 (452)
T ss_pred             HHHHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEe---cCCEEEECCCcEEEeCEEEEEECCCCCCCCC---CC
Confidence                    0    0000011121   237999999866554   5778888788889999999999999987763   22


Q ss_pred             CCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHH
Q 013952          136 ADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYA  215 (433)
Q Consensus       136 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~  215 (433)
                      ..  ++ .+.+..++..+.+     .+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.+.++
T Consensus       151 ~~--~~-~~~~~~~~~~l~~-----~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~-~d~~~~~~l~~~~~  221 (452)
T TIGR03452       151 DS--GV-RYHTNEDIMRLPE-----LPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRH-LDEDISDRFTEIAK  221 (452)
T ss_pred             CC--CC-EEEcHHHHHhhhh-----cCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccc-cCHHHHHHHHHHHh
Confidence            22  22 2234455544432     3789999999999999999999999999999999888775 78999888877554


Q ss_pred             hcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhhh---ccccc-CCCcEEeCCCCCCCCCCe
Q 013952          216 NKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFK---GQVAE-NKGGIETDDFFKTSADDV  291 (433)
Q Consensus       216 ~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~~---~~~~~-~~g~i~vd~~~~t~~~~v  291 (433)
                       .||+++++++|.+++.++++  ..+.+.+|+++++|.+++++|++|+++++.   .++.. ++|+|.||+++||+.|+|
T Consensus       222 -~gI~i~~~~~V~~i~~~~~~--v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~I  298 (452)
T TIGR03452       222 -KKWDIRLGRNVTAVEQDGDG--VTLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYGRTSARGV  298 (452)
T ss_pred             -cCCEEEeCCEEEEEEEcCCe--EEEEEcCCCEEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCCCcccCCCCE
Confidence             68999999999999863222  456777788899999999999999998753   35666 568899999999999999


Q ss_pred             EEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCCC------cE
Q 013952          292 YAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG------DT  365 (433)
Q Consensus       292 fa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~------~~  365 (433)
                      ||+|||+..+          +....|.+||+++|+||.+.... ....+..+|++++..|+++.+  |+++.      ..
T Consensus       299 yA~GD~~~~~----------~l~~~A~~~g~~~a~ni~~~~~~-~~~~~~~~p~~i~t~p~ia~v--Glte~ea~~~g~~  365 (452)
T TIGR03452       299 WALGDVSSPY----------QLKHVANAEARVVKHNLLHPNDL-RKMPHDFVPSAVFTHPQIATV--GLTEQEAREAGHD  365 (452)
T ss_pred             EEeecccCcc----------cChhHHHHHHHHHHHHhcCCCCc-ccCCCCCCCeEEECCCCeeee--eCCHHHHHhcCCC
Confidence            9999999865          34567889999999999865311 125667889888766666555  66652      22


Q ss_pred             EEEcCCCcc--------ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhh
Q 013952          366 VLFGDNDLA--------SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVL  422 (433)
Q Consensus       366 ~~~~~~~~~--------~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~  422 (433)
                      +..+..+..        ..+.+|.|+++  ++++|||+|++|++++|+ +.++.+|+.++|++||..+
T Consensus       366 ~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~  433 (452)
T TIGR03452       366 ITVKIQNYGDVAYGWAMEDTTGFCKLIADRDTGKLLGAHIIGPQASSLIQPLITAMAFGLDAREMARK  433 (452)
T ss_pred             eEEEEecCCchhhHhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhC
Confidence            222211111        24568899888  589999999999999885 9999999999999977654

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=100.00  E-value=6.2e-48  Score=382.63  Aligned_cols=396  Identities=20%  Similarity=0.253  Sum_probs=283.4

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC------CCCCCCCCccccccCCCCCCC----C---CCcccc---
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE------VAPYERPALSKAYLFPEGTAR----L---PGFHVC---   68 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~------~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~---   68 (433)
                      +|||+|||+|++|..||..+++.|++   |+|||+.      .+....|.++|.++......+    .   ..+...   
T Consensus       116 ~yDviVIG~G~gG~~aA~~aa~~G~k---V~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~~~  192 (659)
T PTZ00153        116 EYDVGIIGCGVGGHAAAINAMERGLK---VIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNA  192 (659)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCc---EEEEeCCCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeeecc
Confidence            68999999999999999999999998   9999952      356666777776554432100    0   011000   


Q ss_pred             --------------c-CC-C----------------CCCCCHhHHHhC-------CcEEEeCceEEEEECCCCEEEe-CC
Q 013952           69 --------------V-GS-G----------------GERLLPEWYKEK-------GIELILSTEIVRADIASKTLLS-AT  108 (433)
Q Consensus        69 --------------~-~~-~----------------~~~~~~~~~~~~-------~v~~~~~~~v~~i~~~~~~v~~-~~  108 (433)
                                    . .. .                ........++..       +++++.+...+.   +.++|.. .+
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~---~~~~v~v~~~  269 (659)
T PTZ00153        193 FKNGKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIV---DKNTIKSEKS  269 (659)
T ss_pred             ccccccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEe---cCCeEEEccC
Confidence                          0 00 0                001111223333       367777643322   3455544 35


Q ss_pred             CcEEecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeE
Q 013952          109 GLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDV  188 (433)
Q Consensus       109 ~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V  188 (433)
                      ++++.||+||||||++|..|+.   ++.+...++++.   ++..+..     .+++++|||+|++|+|+|..|.+.|.+|
T Consensus       270 g~~i~ad~lIIATGS~P~~P~~---~~~~~~~V~ts~---d~~~l~~-----lpk~VvIVGgG~iGvE~A~~l~~~G~eV  338 (659)
T PTZ00153        270 GKEFKVKNIIIATGSTPNIPDN---IEVDQKSVFTSD---TAVKLEG-----LQNYMGIVGMGIIGLEFMDIYTALGSEV  338 (659)
T ss_pred             CEEEECCEEEEcCCCCCCCCCC---CCCCCCcEEehH---Hhhhhhh-----cCCceEEECCCHHHHHHHHHHHhCCCeE
Confidence            6789999999999999987763   444445677553   3333321     3789999999999999999999999999


Q ss_pred             EEEccCCccCCCCCCHHHHHHHHHHH-HhcCcEEEcCCeEEEEEecCCCcEEEEEeCC-------C--------cEEECC
Q 013952          189 SMVYPEPWCMPRLFTADIAAFYEGYY-ANKGIKIIKGTVAVGFTTNADGEVKEVKLKD-------G--------RTLEAD  252 (433)
Q Consensus       189 ~li~~~~~~~~~~~~~~~~~~l~~~l-~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~-------g--------~~i~~d  252 (433)
                      +++++.+++++. +++++.+.+.+.+ ++.||++++++.|.++...+++....+.+.+       +        +++++|
T Consensus       339 TLIe~~~~ll~~-~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD  417 (659)
T PTZ00153        339 VSFEYSPQLLPL-LDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVD  417 (659)
T ss_pred             EEEeccCccccc-CCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcC
Confidence            999999999886 8999999998875 6799999999999999863333323443321       1        379999


Q ss_pred             EEEEcccCccChhhh---hcccccCCCcEEeCCCCCCC------CCCeEEcCccccccccccCcccccccHHHHHHHHHH
Q 013952          253 IVVVGVGGRPLISLF---KGQVAENKGGIETDDFFKTS------ADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQ  323 (433)
Q Consensus       253 ~vi~a~G~~p~~~~~---~~~~~~~~g~i~vd~~~~t~------~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~  323 (433)
                      .|++|+|++||++.+   ..++..++|+|.||++|||+      +|+|||+|||++.+          .+...|.+||++
T Consensus       418 ~VlvAtGr~Pnt~~L~l~~~gi~~~~G~I~VDe~lqTs~~~~~~v~~IYAiGDv~g~~----------~La~~A~~qg~~  487 (659)
T PTZ00153        418 SCLVATGRKPNTNNLGLDKLKIQMKRGFVSVDEHLRVLREDQEVYDNIFCIGDANGKQ----------MLAHTASHQALK  487 (659)
T ss_pred             EEEEEECcccCCccCCchhcCCcccCCEEeECCCCCcCCCCCCCCCCEEEEEecCCCc----------cCHHHHHHHHHH
Confidence            999999999999865   33455566889999999997      69999999998754          467788999999


Q ss_pred             HHHHHhccCCC----------CCccCCCCCCeEEEeecccceEEecCCCCcE-------------EEEcCCCcc------
Q 013952          324 AVKTIMATEGG----------KTVTGYDYLPYFYSRAFDLSWQFYGDNVGDT-------------VLFGDNDLA------  374 (433)
Q Consensus       324 aa~~i~~~~~~----------~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~~-------------~~~~~~~~~------  374 (433)
                      +++||.+....          .....|..+|...+..|+++.+  |+++.+.             ..+......      
T Consensus       488 aa~ni~g~~~~~~~~~~~~~~~~~~~~~~iP~~ift~PeiA~V--GlTE~eA~~~g~~~~v~v~~~~~~~~~ra~~~~~~  565 (659)
T PTZ00153        488 VVDWIEGKGKENVNINVENWASKPIIYKNIPSVCYTTPELAFI--GLTEKEAKELYPPDNVGVEISFYKANSKVLCENNI  565 (659)
T ss_pred             HHHHHcCCCccccccccccccccccccCcCCEEEECcCceEEe--eCCHHHHHhcCCCcceEEEEEEecccchhhhcccc
Confidence            99999875210          2235677889888877777666  6654211             111111100      


Q ss_pred             -------------------ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhcccCCCcc
Q 013952          375 -------------------SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFA  430 (433)
Q Consensus       375 -------------------~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (433)
                                         ...++|.|+++  ++++|||+|++|++++++ +.++.+|++++|++||..+.-+-++++
T Consensus       566 ~~p~~~~~~~y~~g~~~~~~~~~G~vKli~d~~t~rILGa~ivG~~A~elI~~~a~aI~~~~tv~dl~~~~~~hPT~s  643 (659)
T PTZ00153        566 SFPNNSKNNSYNKGKYNTVDNTEGMVKIVYLKDTKEILGMFIVGSYASILIHEGVLAINLKLSVKDLAHMVHSHPTIS  643 (659)
T ss_pred             ccccccccccccccccccccCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcCCCCChH
Confidence                               01567898888  589999999999999885 999999999999998887765555544

>PRK14727 putative mercuric reductase; Provisional

Probab=100.00  E-value=2.3e-47  Score=373.35  Aligned_cols=391  Identities=17%  Similarity=0.154  Sum_probs=274.4

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-----CCCCCCCCccccccCCCCC------CCCCCcccccCC-C
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-----VAPYERPALSKAYLFPEGT------ARLPGFHVCVGS-G   72 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-----~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~-~   72 (433)
                      +||++|||+|++|+++|..|++.|.+   |+++|+.     .+....|..++.++.....      ....++...... +
T Consensus        16 ~~dvvvIG~G~aG~~~a~~~~~~g~~---v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~   92 (479)
T PRK14727         16 QLHVAIIGSGSAAFAAAIKAAEHGAR---VTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPSID   92 (479)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCe---EEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCccC
Confidence            58999999999999999999999987   9999975     2334445555544322100      000111100000 0


Q ss_pred             --------------CCC-CCHhHHHhC-CcEEEeCceEEEEECCCCEEEeCCCc--EEecceEEEccCCCccccCCCCCC
Q 013952           73 --------------GER-LLPEWYKEK-GIELILSTEIVRADIASKTLLSATGL--IFKYQILVIATGSTVLRLTDFGVE  134 (433)
Q Consensus        73 --------------~~~-~~~~~~~~~-~v~~~~~~~v~~i~~~~~~v~~~~~~--~~~~d~lvlAtG~~~~~~~~~~~~  134 (433)
                                    ... .....++.. +++++.+. ..-++...-.|...++.  +++||+||||||++|+.|+   +|
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~-a~f~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~p~---i~  168 (479)
T PRK14727         93 RGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGY-ARFKDGNTLVVRLHDGGERVLAADRCLIATGSTPTIPP---IP  168 (479)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEE-EEEecCCEEEEEeCCCceEEEEeCEEEEecCCCCCCCC---CC
Confidence                          000 112233333 78888874 33333322334445553  6999999999999998887   56


Q ss_pred             CCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHH
Q 013952          135 GADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYY  214 (433)
Q Consensus       135 g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l  214 (433)
                      |.+....++.   .+.  +.   ....+++++|||+|++|+|+|..|.+.|.+|+++.+. .+++. +++++.+.+++.+
T Consensus       169 G~~~~~~~~~---~~~--l~---~~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~-~~l~~-~d~~~~~~l~~~L  238 (479)
T PRK14727        169 GLMDTPYWTS---TEA--LF---SDELPASLTVIGSSVVAAEIAQAYARLGSRVTILARS-TLLFR-EDPLLGETLTACF  238 (479)
T ss_pred             CcCccceecc---hHH--hc---cccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC-CCCCc-chHHHHHHHHHHH
Confidence            6543333321   111  11   1114789999999999999999999999999999875 56665 7999999999999


Q ss_pred             HhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh---hccccc-CCCcEEeCCCCCCCCCC
Q 013952          215 ANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSADD  290 (433)
Q Consensus       215 ~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~  290 (433)
                      ++.||+++++++++++..+++  ...+.+.++ ++++|.+++|+|++||+.++   ..++.. .+|+|.||+++||+.|+
T Consensus       239 ~~~GV~i~~~~~V~~i~~~~~--~~~v~~~~g-~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~~~~Ts~~~  315 (479)
T PRK14727        239 EKEGIEVLNNTQASLVEHDDN--GFVLTTGHG-ELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAMETSAPD  315 (479)
T ss_pred             HhCCCEEEcCcEEEEEEEeCC--EEEEEEcCC-eEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECCCeecCCCC
Confidence            999999999999999986322  244555555 69999999999999999854   335665 56889999999999999


Q ss_pred             eEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCCC------c
Q 013952          291 VYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG------D  364 (433)
Q Consensus       291 vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~------~  364 (433)
                      |||+|||++.+.          ....|..+|+.||.||++...   ..++...|++.+..++++.+  |+++.      .
T Consensus       316 IyA~GD~~~~~~----------~~~~A~~~G~~aa~~i~g~~~---~~~~~~~p~~~~~~p~ia~v--Glte~~a~~~g~  380 (479)
T PRK14727        316 IYAAGDCSDLPQ----------FVYVAAAAGSRAGINMTGGNA---TLDLSAMPAVIFTDPQVATV--GLSEAKAHLSGI  380 (479)
T ss_pred             EEEeeecCCcch----------hhhHHHHHHHHHHHHHcCCCc---ccccccCCcEEEecCceeee--eCCHHHHHHcCC
Confidence            999999998763          456788999999999987532   25566778776655655554  76652      1


Q ss_pred             EEE-----EcCCCc---cccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhcccCCCcc
Q 013952          365 TVL-----FGDNDL---ASATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFA  430 (433)
Q Consensus       365 ~~~-----~~~~~~---~~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (433)
                      .+.     +.+...   ....++|.|+++  ++++|||+|++|+.++|+ +.++.+|++++|++||..+.-+-++++
T Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~  457 (479)
T PRK14727        381 ETISRVLTMENVPRALANFETDGFIKLVAEEGTRKLIGAQILAHEGGELIQSAALAIHNRMTVEELADQLFPYLTMV  457 (479)
T ss_pred             ceEEEEEEcccCchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCCccCCChH
Confidence            121     111111   123568899887  589999999999998885 999999999999997666555444443

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=100.00  E-value=1.1e-47  Score=374.36  Aligned_cols=391  Identities=19%  Similarity=0.175  Sum_probs=277.0

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-------------CCCCCCCCccccccCCCCCC----CCCCccc
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-------------VAPYERPALSKAYLFPEGTA----RLPGFHV   67 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-------------~~~~~~~~~~~~~~~~~~~~----~~~~~~~   67 (433)
                      +||+||||||++|+.||..+++.|.+   |++||+.             .+.+..|.++|.++......    ....+..
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~G~~---v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~   78 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADYGAK---VMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGW   78 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCe---EEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCc
Confidence            58999999999999999999999987   9999962             24444555666544322110    0001100


Q ss_pred             ccCC----C--------------CCCCCHhHHHhCCcEEEeCceEEEEECCCCEEEeC--CC--cEEecceEEEccCCCc
Q 013952           68 CVGS----G--------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSA--TG--LIFKYQILVIATGSTV  125 (433)
Q Consensus        68 ~~~~----~--------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~--~~--~~~~~d~lvlAtG~~~  125 (433)
                      ....    +              ........++..+++++.+... -++  .++|.+.  ++  ++++||+||||||++|
T Consensus        79 ~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~-f~~--~~~v~v~~~~g~~~~~~~d~lVIATGs~p  155 (484)
T TIGR01438        79 NVEETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAE-FVD--KHRIKATNKKGKEKIYSAERFLIATGERP  155 (484)
T ss_pred             ccCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEE-EcC--CCEEEEeccCCCceEEEeCEEEEecCCCC
Confidence            0000    0              0112233456789999998543 343  3455442  33  3699999999999999


Q ss_pred             cccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHH
Q 013952          126 LRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTAD  205 (433)
Q Consensus       126 ~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~  205 (433)
                      +.|+   +||... ..++   ..++..+.    . .+++++|||+|++|+|+|..|.+.|.+|+++.+ +.+++. ++++
T Consensus       156 ~~p~---ipG~~~-~~~~---~~~~~~~~----~-~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~-~~~l~~-~d~~  221 (484)
T TIGR01438       156 RYPG---IPGAKE-LCIT---SDDLFSLP----Y-CPGKTLVVGASYVALECAGFLAGIGLDVTVMVR-SILLRG-FDQD  221 (484)
T ss_pred             CCCC---CCCccc-eeec---HHHhhccc----c-cCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEe-cccccc-cCHH
Confidence            8877   566432 2222   22222221    1 468999999999999999999999999999987 466664 7999


Q ss_pred             HHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCC---cEEECCEEEEcccCccChhhh---hcccccC--CCc
Q 013952          206 IAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG---RTLEADIVVVGVGGRPLISLF---KGQVAEN--KGG  277 (433)
Q Consensus       206 ~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g---~~i~~d~vi~a~G~~p~~~~~---~~~~~~~--~g~  277 (433)
                      +.+.+++.|++.||++++++.+.++... ++ ...+.+.++   +++++|.|++|+|++||++++   ..++..+  +|+
T Consensus       222 ~~~~l~~~L~~~gV~i~~~~~v~~v~~~-~~-~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~  299 (484)
T TIGR01438       222 CANKVGEHMEEHGVKFKRQFVPIKVEQI-EA-KVKVTFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGK  299 (484)
T ss_pred             HHHHHHHHHHHcCCEEEeCceEEEEEEc-CC-eEEEEEecCCcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCe
Confidence            9999999999999999999999998763 22 234655554   379999999999999999864   3355553  478


Q ss_pred             EEeCCCCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEE
Q 013952          278 IETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQF  357 (433)
Q Consensus       278 i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  357 (433)
                      |.||+++||+.|+|||+|||+....         ..+..|.+||+.+|+||++...  ....|..+|+..+..|+++.+ 
T Consensus       300 I~Vd~~~~Ts~p~IyA~GDv~~~~~---------~l~~~A~~~g~~aa~~i~~~~~--~~~~~~~~p~~i~~~p~ia~v-  367 (484)
T TIGR01438       300 IPADEEEQTNVPYIYAVGDILEDKQ---------ELTPVAIQAGRLLAQRLFSGST--VICDYENVPTTVFTPLEYGAC-  367 (484)
T ss_pred             EecCCCcccCCCCEEEEEEecCCCc---------cchHHHHHHHHHHHHHHhcCCC--cccccccCCeEEeCCCceeee-
Confidence            9999999999999999999996322         3567789999999999986432  125677789888777766555 


Q ss_pred             ecCCCCc--------EEEEc--CCCcc--------ccCCcEEEEEE---eCCEEEEEEEecCChHHH-HHHHHHHHcCCC
Q 013952          358 YGDNVGD--------TVLFG--DNDLA--------SATHKFGTYWI---KDGKVVGVFLESGTPEEN-KAIAKVARVQPS  415 (433)
Q Consensus       358 ~g~~~~~--------~~~~~--~~~~~--------~~~~~~~~~~~---~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~  415 (433)
                       |+++.+        .+...  ...+.        ....+|.|+++   ++++|||+|++|++++|+ +.++.+|++++|
T Consensus       368 -Glte~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~t~~ILG~~ivg~~a~e~I~~~a~ai~~~~t  446 (484)
T TIGR01438       368 -GLSEEKAVEKFGEENIEVFHSYFWPLEWTIPSRDNSNKCYAKAVCNRKENERVVGFHVVGPNAGEVTQGFAAALRCGLT  446 (484)
T ss_pred             -cCCHHHHHHhcCCCcEEEEEeecchhhhHhhCCCccCCcEEEEEEecCCCCeEEEEEEECCCHHHHHHHHHHHHHcCCC
Confidence             665421        11111  11111        11457888775   379999999999999885 999999999999


Q ss_pred             CCChhhhcccCCCcc
Q 013952          416 VESLDVLKNEGLSFA  430 (433)
Q Consensus       416 ~~~~~~~~~~~~~~~  430 (433)
                      ++||..+.-+-++++
T Consensus       447 ~~dl~~~~~~hPt~s  461 (484)
T TIGR01438       447 KKDLDNTIGIHPVCA  461 (484)
T ss_pred             HHHHhhhhcCCCChH
Confidence            997776544444443

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=4.6e-47  Score=371.48  Aligned_cols=392  Identities=23%  Similarity=0.231  Sum_probs=274.5

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-C---CCCCCCCccccccCCCCC----CCCCCcccccC-CC---
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-V---APYERPALSKAYLFPEGT----ARLPGFHVCVG-SG---   72 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~---~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~---   72 (433)
                      +||||||||||+|++||.+|++.|++   |+|||++ .   +.+..|.+++.++.....    .+.+.+..... ..   
T Consensus         3 ~yDvvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~~~~~~   79 (460)
T PRK06292          3 KYDVIVIGAGPAGYVAARRAAKLGKK---VALIEKGPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHADGPKIDF   79 (460)
T ss_pred             cccEEEECCCHHHHHHHHHHHHCCCe---EEEEeCCccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcCCCccCH
Confidence            69999999999999999999999987   9999986 2   333445455443321100    00111100000 00   


Q ss_pred             -------------CCCCC-HhHHHhCCcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCCCCCCCC
Q 013952           73 -------------GERLL-PEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADA  138 (433)
Q Consensus        73 -------------~~~~~-~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~  138 (433)
                                   ..... ...++..+++++.+ ....++  .+.+.+ ++++++||+||||||+.  .|+.+++.....
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~--~~~v~v-~~~~~~~d~lIiATGs~--~p~ipg~~~~~~  153 (460)
T PRK06292         80 KKVMARVRRERDRFVGGVVEGLEKKPKIDKIKG-TARFVD--PNTVEV-NGERIEAKNIVIATGSR--VPPIPGVWLILG  153 (460)
T ss_pred             HHHHHHHHHHHHHHhcchHHHHHhhCCCEEEEE-EEEEcc--CCEEEE-CcEEEEeCEEEEeCCCC--CCCCCCCcccCC
Confidence                         00111 22344567888776 343333  345555 66789999999999998  334222221123


Q ss_pred             CCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcC
Q 013952          139 KNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKG  218 (433)
Q Consensus       139 ~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~G  218 (433)
                      ..++++.   +...+.     ..+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+++.+++. 
T Consensus       154 ~~~~~~~---~~~~~~-----~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~~~~~l~~~-  223 (460)
T PRK06292        154 DRLLTSD---DAFELD-----KLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPL-EDPEVSKQAQKILSKE-  223 (460)
T ss_pred             CcEECch---HHhCcc-----ccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc-hhHHHHHHHHHHHhhc-
Confidence            3454432   222221     14789999999999999999999999999999999988875 7999999999999999 


Q ss_pred             cEEEcCCeEEEEEecCCCcEEEEEeCCC--cEEECCEEEEcccCccChhhh---hccccc-CCCcEEeCCCCCCCCCCeE
Q 013952          219 IKIIKGTVAVGFTTNADGEVKEVKLKDG--RTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSADDVY  292 (433)
Q Consensus       219 V~v~~~~~v~~i~~~~~g~~~~v~~~~g--~~i~~d~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~vf  292 (433)
                      |++++++++.+++..++ ....+++.++  +++++|.+++++|++|+++.+   ..++.. ++|+|.||+++||+.|+||
T Consensus       224 I~i~~~~~v~~i~~~~~-~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~~~~ts~~~Iy  302 (460)
T PRK06292        224 FKIKLGAKVTSVEKSGD-EKVEELEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQTSVPGIY  302 (460)
T ss_pred             cEEEcCCEEEEEEEcCC-ceEEEEEcCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeECCCcccCCCCEE
Confidence            99999999999986322 1223333333  579999999999999999853   345655 5688999999999999999


Q ss_pred             EcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCCC------cEE
Q 013952          293 AVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG------DTV  366 (433)
Q Consensus       293 a~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~------~~~  366 (433)
                      |+|||++.+          ..+..|..||++||.||.+..  .....+..+|+.++..++++.+  |.++.      ..+
T Consensus       303 A~GD~~~~~----------~~~~~A~~qg~~aa~~i~~~~--~~~~~~~~~p~~~~~~~~~a~v--G~te~~a~~~g~~~  368 (460)
T PRK06292        303 AAGDVNGKP----------PLLHEAADEGRIAAENAAGDV--AGGVRYHPIPSVVFTDPQIASV--GLTEEELKAAGIDY  368 (460)
T ss_pred             EEEecCCCc----------cchhHHHHHHHHHHHHhcCCC--CCCcCCCCCCeEEECCCccEEe--ECCHHHHHhcCCCe
Confidence            999999764          456779999999999998742  1125667788877766666555  76652      222


Q ss_pred             EEcCCC-----cc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhcccCCCcc
Q 013952          367 LFGDND-----LA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFA  430 (433)
Q Consensus       367 ~~~~~~-----~~---~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (433)
                      .....+     ..   ....+|.|+++  ++++|+|+|++|++++|+ +.++.+|++++|++||..+.-+-++++
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~  443 (460)
T PRK06292        369 VVGEVPFEAQGRARVMGKNDGFVKVYADKKTGRLLGAHIIGPDAEHLIHLLAWAMQQGLTVEDLLRMPFYHPTLS  443 (460)
T ss_pred             EEEEEecccchHHHhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCccCCCCHH
Confidence            221111     11   23578898888  579999999999999885 999999999999997776654444443

>PTZ00052 thioredoxin reductase; Provisional

Probab=100.00  E-value=7.2e-47  Score=370.29  Aligned_cols=395  Identities=19%  Similarity=0.211  Sum_probs=275.3

Q ss_pred             CCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-------------CCCCCCCCccccccCCCCCC-------C
Q 013952            2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-------------VAPYERPALSKAYLFPEGTA-------R   61 (433)
Q Consensus         2 m~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-------------~~~~~~~~~~~~~~~~~~~~-------~   61 (433)
                      |...|||+||||||||++||.+|+++|++   |+|||+.             .+....|.+++.++......       .
T Consensus         2 ~~~~yDviVIG~GpaG~~AA~~aa~~G~~---V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~   78 (499)
T PTZ00052          2 LTFMYDLVVIGGGSGGMAAAKEAAAHGKK---VALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQ   78 (499)
T ss_pred             CccccCEEEECCCHHHHHHHHHHHhCCCe---EEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHh
Confidence            33469999999999999999999999988   9999952             12223333443322110000       0


Q ss_pred             CCCcccccCC--------------CCCCCCHhHHHhCCcEEEeCceEEEEECCCCEEEeCC---CcEEecceEEEccCCC
Q 013952           62 LPGFHVCVGS--------------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSAT---GLIFKYQILVIATGST  124 (433)
Q Consensus        62 ~~~~~~~~~~--------------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~---~~~~~~d~lvlAtG~~  124 (433)
                      ..++......              .........++..+++++.+. ....  +.++|.+.+   +.+++||+||||||+.
T Consensus        79 ~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~-a~~~--~~~~v~v~~~~~~~~i~~d~lIIATGs~  155 (499)
T PTZ00052         79 MYGWKTSSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGL-AKLK--DEHTVSYGDNSQEETITAKYILIATGGR  155 (499)
T ss_pred             cCCCCCCCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEE-EEEc--cCCEEEEeeCCCceEEECCEEEEecCCC
Confidence            0000000000              000011122233678888763 3322  345665532   3579999999999999


Q ss_pred             ccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCH
Q 013952          125 VLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTA  204 (433)
Q Consensus       125 ~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~  204 (433)
                      |+.|+.  +||.+. ..+   +..+...+.    . .+++++|||+|++|+|+|..|++.|.+|+++.+. .+++. +++
T Consensus       156 p~~p~~--i~G~~~-~~~---~~~~~~~~~----~-~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l~~-~d~  222 (499)
T PTZ00052        156 PSIPED--VPGAKE-YSI---TSDDIFSLS----K-DPGKTLIVGASYIGLETAGFLNELGFDVTVAVRS-IPLRG-FDR  222 (499)
T ss_pred             CCCCCC--CCCccc-eee---cHHHHhhhh----c-CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC-ccccc-CCH
Confidence            987642  566432 122   223332221    1 4689999999999999999999999999999874 55554 899


Q ss_pred             HHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh---hccccc-CCCcEEe
Q 013952          205 DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIET  280 (433)
Q Consensus       205 ~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~---~~~~~~-~~g~i~v  280 (433)
                      ++.+.+++.|++.||++++++.+.++...+ +. ..+.+.+|+++++|.|++++|++||++++   ..++.. ++|++.+
T Consensus       223 ~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~-~~-~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~  300 (499)
T PTZ00052        223 QCSEKVVEYMKEQGTLFLEGVVPINIEKMD-DK-IKVLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIA  300 (499)
T ss_pred             HHHHHHHHHHHHcCCEEEcCCeEEEEEEcC-Ce-EEEEECCCCEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEee
Confidence            999999999999999999999999997632 22 45777788889999999999999999876   334555 4677777


Q ss_pred             CCCCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecC
Q 013952          281 DDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGD  360 (433)
Q Consensus       281 d~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~  360 (433)
                      +++ +|+.|+|||+|||+....         .++..|.+||+.+|+||++...  ....+..+|+.+++.|+++.+  |+
T Consensus       301 ~~~-~Ts~p~IyAiGDv~~~~~---------~l~~~A~~~g~~aa~ni~g~~~--~~~~~~~~p~~ift~p~ia~v--Gl  366 (499)
T PTZ00052        301 PND-CTNIPNIFAVGDVVEGRP---------ELTPVAIKAGILLARRLFKQSN--EFIDYTFIPTTIFTPIEYGAC--GY  366 (499)
T ss_pred             CCC-cCCCCCEEEEEEecCCCc---------ccHHHHHHHHHHHHHHHhCCCC--CcCccccCCeEEecCCcceee--cC
Confidence            777 999999999999986321         4678899999999999986432  235677889988877777666  66


Q ss_pred             CCCc--------EEEEcCCCc-----c------------------ccCCcEEEEEE-e--CCEEEEEEEecCChHHH-HH
Q 013952          361 NVGD--------TVLFGDNDL-----A------------------SATHKFGTYWI-K--DGKVVGVFLESGTPEEN-KA  405 (433)
Q Consensus       361 ~~~~--------~~~~~~~~~-----~------------------~~~~~~~~~~~-~--~~~l~G~~~~g~~~~~~-~~  405 (433)
                      ++.+        .+.....+.     .                  ..+.+|.|+++ +  +++|||+|++|++++|+ +.
T Consensus       367 te~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~~IlG~~ivg~~A~elI~~  446 (499)
T PTZ00052        367 SSEAAIAKYGEDDIEEYLQEFNTLEIAAVHREKHERARKDEYDFDVSSNCLAKLVCVKSEDNKVVGFHFVGPNAGEITQG  446 (499)
T ss_pred             CHHHHHHhcCCCCEEEEEeecccchhhccccccccccccccccccccCCceEEEEEecCCCCEEEEEEEECCCHHHHHHH
Confidence            5421        111111110     0                  01468999876 2  69999999999999996 99


Q ss_pred             HHHHHHcCCCCCChhhhcccCCCccc
Q 013952          406 IAKVARVQPSVESLDVLKNEGLSFAS  431 (433)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (433)
                      ++.+|++++|++||..+.-+-+++++
T Consensus       447 ~~~ai~~~~t~~~l~~~~~~hPt~sE  472 (499)
T PTZ00052        447 FSLALKLGAKKSDFDSMIGIHPTDAE  472 (499)
T ss_pred             HHHHHHCCCCHHHHhcccccCCCCch
Confidence            99999999999988877666666654

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=100.00  E-value=2.3e-46  Score=366.83  Aligned_cols=394  Identities=22%  Similarity=0.266  Sum_probs=277.7

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-C---CCCCCCCccccccCCCCCCC----CCCcccccCCC----
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-V---APYERPALSKAYLFPEGTAR----LPGFHVCVGSG----   72 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~---~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~----   72 (433)
                      .|||+|||||+||++||.+|++.|++   |+|||+. .   +....|..++.++.......    ...+.......    
T Consensus         1 ~yDvvVIG~G~aGl~aA~~la~~G~~---v~lie~~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~~~~   77 (461)
T TIGR01350         1 AYDVVVIGGGPGGYVAAIRAAQLGLK---VALVEKEYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVSVDW   77 (461)
T ss_pred             CccEEEECCCHHHHHHHHHHHhCCCe---EEEEecCCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCcCCH
Confidence            38999999999999999999999987   9999986 1   22222333443332211100    00000000000    


Q ss_pred             -------------CCCCCHhHHHhCCcEEEeCceEEEEECCCCEEEeCCC-cEEecceEEEccCCCccccCCCCCC-CCC
Q 013952           73 -------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSATG-LIFKYQILVIATGSTVLRLTDFGVE-GAD  137 (433)
Q Consensus        73 -------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~-~~~~~d~lvlAtG~~~~~~~~~~~~-g~~  137 (433)
                                   ........+++.+++++.+ .+..+++....+...++ .+++||+||+|||++|+.|+.   + +.+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~d~lVlAtG~~p~~~~~---~~~~~  153 (461)
T TIGR01350        78 EKMQKRKNKVVKKLVGGVKGLLKKNKVTVIKG-EAKFLDPGTVLVTGENGEETLTAKNIIIATGSRPRSLPG---PFDFD  153 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEccCCEEEEecCCCcEEEEeCEEEEcCCCCCCCCCC---CCCCC
Confidence                         0001123445678999987 44445543333444443 479999999999999987763   3 222


Q ss_pred             CCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhc
Q 013952          138 AKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK  217 (433)
Q Consensus       138 ~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~  217 (433)
                      ...+++.   .+...+.    . .+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.+.+++.
T Consensus       154 ~~~~~~~---~~~~~~~----~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~~~~~l~~~  224 (461)
T TIGR01350       154 GEVVITS---TGALNLK----E-VPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILPG-EDAEVSKVVAKALKKK  224 (461)
T ss_pred             CceEEcc---hHHhccc----c-CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCC-CCHHHHHHHHHHHHHc
Confidence            2234432   3332221    1 4789999999999999999999999999999999988875 7899999999999999


Q ss_pred             CcEEEcCCeEEEEEecCCCcEEEEEeCCC--cEEECCEEEEcccCccChh--hh-hccccc-CCCcEEeCCCCCCCCCCe
Q 013952          218 GIKIIKGTVAVGFTTNADGEVKEVKLKDG--RTLEADIVVVGVGGRPLIS--LF-KGQVAE-NKGGIETDDFFKTSADDV  291 (433)
Q Consensus       218 GV~v~~~~~v~~i~~~~~g~~~~v~~~~g--~~i~~d~vi~a~G~~p~~~--~~-~~~~~~-~~g~i~vd~~~~t~~~~v  291 (433)
                      ||++++++++.+++.+ ++. ..+.+.+|  +++++|.+++|+|++|++.  ++ ..++.. .+|++.||+++||+.|+|
T Consensus       225 gi~i~~~~~v~~i~~~-~~~-v~v~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~I  302 (461)
T TIGR01350       225 GVKILTNTKVTAVEKN-DDQ-VVYENKGGETETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVDEYMRTNVPGI  302 (461)
T ss_pred             CCEEEeCCEEEEEEEe-CCE-EEEEEeCCcEEEEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEeeCCCcccCCCCE
Confidence            9999999999999863 333 34666666  5799999999999999998  33 345555 568899999999999999


Q ss_pred             EEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCCC------cE
Q 013952          292 YAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG------DT  365 (433)
Q Consensus       292 fa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~------~~  365 (433)
                      ||+|||+..+          ..+..|..+|+.+|.||.+....  ..++...|...+..++++..  |.++.      ..
T Consensus       303 yaiGD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~--~~~~~~~~~~~~~~~~~a~v--G~~~~~a~~~g~~  368 (461)
T TIGR01350       303 YAIGDVIGGP----------MLAHVASHEGIVAAENIAGKEPA--PIDYDAVPSCIYTDPEVASV--GLTEEQAKEAGYD  368 (461)
T ss_pred             EEeeecCCCc----------ccHHHHHHHHHHHHHHHcCCCCC--CCCCCCCCeEEecCCceEEE--eCCHHHHHhCCCC
Confidence            9999999754          46788999999999999875321  24566677766655555444  65542      11


Q ss_pred             EEEcCCC-----cc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhcccCCCcc
Q 013952          366 VLFGDND-----LA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFA  430 (433)
Q Consensus       366 ~~~~~~~-----~~---~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (433)
                      +.....+     ..   ....+|.|+++  ++++|+|+|++|++++|+ +.++.+|++++|++||..+..+-++|+
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~g~~kl~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~P~~~  444 (461)
T TIGR01350       369 VKIGKFPFAANGKALALGETDGFVKIIADKKTGEILGAHIIGPHATELISEAVLAMELELTVEELAKTIHPHPTLS  444 (461)
T ss_pred             eEEEEEeCccchHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcccCCCHH
Confidence            2222111     11   23567888877  579999999999998885 999999999999998888755555554

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=100.00  E-value=8.9e-44  Score=344.99  Aligned_cols=382  Identities=19%  Similarity=0.257  Sum_probs=287.5

Q ss_pred             HHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCC-HhHHHhCCcEEEeCceEEE
Q 013952           19 YAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLL-PEWYKEKGIELILSTEIVR   96 (433)
Q Consensus        19 ~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~v~~   96 (433)
                      +||.+|++.+ +..+|+|||++ ...|..+.+..-. .... . .+       ....... ..++.+.+++++.+++|+.
T Consensus         1 saA~~l~~~~-~~~~Vtlid~~~~~~~~~~~l~~~~-~g~~-~-~~-------~~~~~~~~~~~~~~~gv~~~~~~~V~~   69 (427)
T TIGR03385         1 SAASRVRRLD-KESDIIVFEKTEDVSFANCGLPYVI-GGVI-D-DR-------NKLLAYTPEVFIKKRGIDVKTNHEVIE   69 (427)
T ss_pred             CHHHHHHhhC-CCCcEEEEEcCCceeEEcCCCCeEe-cccc-C-CH-------HHcccCCHHHHHHhcCCeEEecCEEEE
Confidence            4788998874 35679999999 4434322221100 0000 0 00       0001222 3455888999988889999


Q ss_pred             EECCCCEEEeCC---CcEEe--cceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCC
Q 013952           97 ADIASKTLLSAT---GLIFK--YQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGG  171 (433)
Q Consensus        97 i~~~~~~v~~~~---~~~~~--~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G  171 (433)
                      ++++++++.+.+   ++++.  ||+||||||++|..|+   ++|.+..++++..++.++..+.+.+....+++++|||+|
T Consensus        70 id~~~~~v~~~~~~~~~~~~~~yd~lIiATG~~p~~~~---i~G~~~~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG  146 (427)
T TIGR03385        70 VNDERQTVVVRNNKTNETYEESYDYLILSPGASPIVPN---IEGINLDIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGG  146 (427)
T ss_pred             EECCCCEEEEEECCCCCEEecCCCEEEECCCCCCCCCC---CCCcCCCCEEEECCHHHHHHHHHHHhhcCCCeEEEECCC
Confidence            999888887753   35677  9999999999998776   677666779999999998888888865568999999999


Q ss_pred             HHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEC
Q 013952          172 YIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEA  251 (433)
Q Consensus       172 ~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~  251 (433)
                      ++|+|+|..|.+.|.+|+++++.+.++...+++++.+.+.+.+++.||++++++.+.++..  ++.+  +.+.+|+++++
T Consensus       147 ~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~~~~--v~~~~g~~i~~  222 (427)
T TIGR03385       147 YIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEG--EERV--KVFTSGGVYQA  222 (427)
T ss_pred             HHHHHHHHHHHhCCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEec--CCCE--EEEcCCCEEEe
Confidence            9999999999999999999999888754447899999999999999999999999999976  4433  45677889999


Q ss_pred             CEEEEcccCccChhhhhc-cccc-CCCcEEeCCCCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHh
Q 013952          252 DIVVVGVGGRPLISLFKG-QVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIM  329 (433)
Q Consensus       252 d~vi~a~G~~p~~~~~~~-~~~~-~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~  329 (433)
                      |.+++|+|++|+..++.. ++.. .+|+|.||+++||+.|+|||+|||+..+....+.+...+++..|.+||+++|+||.
T Consensus       223 D~vi~a~G~~p~~~~l~~~gl~~~~~G~i~vd~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~  302 (427)
T TIGR03385       223 DMVILATGIKPNSELAKDSGLKLGETGAIWVNEKFQTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIA  302 (427)
T ss_pred             CEEEECCCccCCHHHHHhcCcccCCCCCEEECCCcEeCCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhc
Confidence            999999999999987754 5666 56899999999999999999999998876555544444688899999999999998


Q ss_pred             ccCCCCCccCCCC-CCeEEEeecccceEEecCCCC------cEEEEcCC-----Cc--cccCCcEEEEEE--eCCEEEEE
Q 013952          330 ATEGGKTVTGYDY-LPYFYSRAFDLSWQFYGDNVG------DTVLFGDN-----DL--ASATHKFGTYWI--KDGKVVGV  393 (433)
Q Consensus       330 ~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~g~~~~------~~~~~~~~-----~~--~~~~~~~~~~~~--~~~~l~G~  393 (433)
                      +..     ..|.. .+..+..+++..+..+|.++.      ..+.....     ..  .....+|.|+++  ++++|+|+
T Consensus       303 g~~-----~~~~~~~~~~~~~~~~~~~a~vG~t~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~  377 (427)
T TIGR03385       303 GND-----IEFKGVLGTNITKFFDLTIASTGVTENEAKKLNIDYKTVFVKAKTHANYYPGNSPLHLKLIYEKDTRRILGA  377 (427)
T ss_pred             CCC-----CCCCCcceeeEEEEcCeEEEEecCCHHHHHHCCCCeEEEEEecCCCCCcCCCCceEEEEEEEECCCCeEEEE
Confidence            752     33432 223334456667777787652      11111111     10  123456888887  57999999


Q ss_pred             EEecCC-hHHH-HHHHHHHHcCCCCCChhhhc
Q 013952          394 FLESGT-PEEN-KAIAKVARVQPSVESLDVLK  423 (433)
Q Consensus       394 ~~~g~~-~~~~-~~~~~~~~~~~~~~~~~~~~  423 (433)
                      |++|+. ++|+ +.++.+|++++|++|+..+.
T Consensus       378 ~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~  409 (427)
T TIGR03385       378 QAVGKEGADKRIDVLAAAIMAGLTVKDLFFFE  409 (427)
T ss_pred             EEEccccHHHHHHHHHHHHHCCCCHHHHhhcc
Confidence            999998 8885 99999999999999777544

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=100.00  E-value=2.2e-44  Score=343.27  Aligned_cols=383  Identities=26%  Similarity=0.398  Sum_probs=319.5

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHh
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   83 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (433)
                      ..+++|||.|++|..+..++.+......+|+++-.+ ...|+|..++.-+-.......+           .....+|+++
T Consensus         3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi-----------~l~~~dwy~~   71 (793)
T COG1251           3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDI-----------SLNRNDWYEE   71 (793)
T ss_pred             ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHH-----------hccchhhHHH
Confidence            468999999999999999998854344579999999 8889988887654432222221           3456789999


Q ss_pred             CCcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCC
Q 013952           84 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNG  163 (433)
Q Consensus        84 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~  163 (433)
                      ++++++.+..++.||+.++.|+.+.|+++.||.||+||||.|+.+|   +||.+.++++.+++.++.+.+.+..+  ..+
T Consensus        72 ~~i~L~~~~~v~~idr~~k~V~t~~g~~~~YDkLilATGS~pfi~P---iPG~~~~~v~~~R~i~D~~am~~~ar--~~~  146 (793)
T COG1251          72 NGITLYTGEKVIQIDRANKVVTTDAGRTVSYDKLIIATGSYPFILP---IPGSDLPGVFVYRTIDDVEAMLDCAR--NKK  146 (793)
T ss_pred             cCcEEEcCCeeEEeccCcceEEccCCcEeecceeEEecCccccccC---CCCCCCCCeeEEecHHHHHHHHHHHh--ccC
Confidence            9999999999999999999999999999999999999999999998   79999999999999999999988844  356


Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe
Q 013952          164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL  243 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~  243 (433)
                      +.+|||+|..|+|+|..|...|.++++++-.+.++.+.+|+.....|++.+++.|++++++...+++..  ++++.++++
T Consensus       147 ~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi~~~l~~~t~ei~g--~~~~~~vr~  224 (793)
T COG1251         147 KAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVG--EDKVEGVRF  224 (793)
T ss_pred             CcEEEccchhhhHHHHHHHhCCCceEEEeecchHHHHhhhhHHHHHHHHHHHhhcceeecccchhhhhc--CcceeeEee
Confidence            789999999999999999999999999999999988889999999999999999999999999888876  778899999


Q ss_pred             CCCcEEECCEEEEcccCccChhhhhc-ccccCCCcEEeCCCCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHH
Q 013952          244 KDGRTLEADIVVVGVGGRPLISLFKG-QVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAE  322 (433)
Q Consensus       244 ~~g~~i~~d~vi~a~G~~p~~~~~~~-~~~~~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~  322 (433)
                      +||..+++|.|++|+|.+||.++... ++..++ +|+||++|||++|+|||+|+|+......+      .++..+..|++
T Consensus       225 ~DG~~i~ad~VV~a~GIrPn~ela~~aGlavnr-GIvvnd~mqTsdpdIYAvGEcae~~g~~y------GLVaP~yeq~~  297 (793)
T COG1251         225 ADGTEIPADLVVMAVGIRPNDELAKEAGLAVNR-GIVVNDYMQTSDPDIYAVGECAEHRGKVY------GLVAPLYEQAK  297 (793)
T ss_pred             cCCCcccceeEEEecccccccHhHHhcCcCcCC-CeeecccccccCCCeeehhhHHHhcCccc------eehhHHHHHHH
Confidence            99999999999999999999999865 455554 89999999999999999999999876544      57788999999


Q ss_pred             HHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCC----CcEEEEcCCCccccCCcEEEEEEeCCEEEEEEEecC
Q 013952          323 QAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV----GDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESG  398 (433)
Q Consensus       323 ~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~g~  398 (433)
                      ++|.++.+...+.   .-..+++..-+..++.+...|.-.    ...+.+-|..    ...|.|+++++++|+|+.++| 
T Consensus       298 v~a~hl~~~~~~~---y~gsv~stkLKv~Gvdl~S~GD~~e~~~~~~iv~~D~~----~~iYKrlvL~dd~IvgavL~G-  369 (793)
T COG1251         298 VLADHLCGGEAEA---YEGSVTSTKLKVSGVDVFSAGDFQETEGAESIVFRDEQ----RGIYKKLVLKDDKIVGAVLYG-  369 (793)
T ss_pred             HHHHHhccCcccc---cccccchhhhcccccceeeccchhhcCCCceEEEeccc----ccceeEEEEeCCeEEEEEEEe-
Confidence            9999999875431   112233333344555555445322    2244444444    568999999999999999998 


Q ss_pred             ChHHHHHHHHHHHcCCCCCChh
Q 013952          399 TPEENKAIAKVARVQPSVESLD  420 (433)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~  420 (433)
                      ..++-.++-.+|.++.+++++.
T Consensus       370 Dt~d~~~l~~li~~~~~~se~r  391 (793)
T COG1251         370 DTSDGGWLLDLILKGADISEIR  391 (793)
T ss_pred             ecccchHHHHHHhcCCCccccc
Confidence            5577788999999999887655

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=100.00  E-value=4.5e-45  Score=321.38  Aligned_cols=392  Identities=24%  Similarity=0.305  Sum_probs=297.4

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-----CCCCCCCCccccccCCCCCCCCCC------cccccCC--
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-----VAPYERPALSKAYLFPEGTARLPG------FHVCVGS--   71 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-----~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~--   71 (433)
                      .||++|||+||+|..||..+++.|++   -+.+|++     .+....|.+++.++......+...      +....+.  
T Consensus        39 d~DvvvIG~GpGGyvAAikAaQlGlk---TacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~  115 (506)
T KOG1335|consen   39 DYDVVVIGGGPGGYVAAIKAAQLGLK---TACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVS  115 (506)
T ss_pred             cCCEEEECCCCchHHHHHHHHHhcce---eEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCcccccee
Confidence            59999999999999999999999998   7899996     244455667777776553322110      0000000  


Q ss_pred             ---------------CCCCCCHhHHHhCCcEEEeCceEEEEECCCCEEEeCCC--cEEecceEEEccCCCccccCCCCCC
Q 013952           72 ---------------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATG--LIFKYQILVIATGSTVLRLTDFGVE  134 (433)
Q Consensus        72 ---------------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~--~~~~~d~lvlAtG~~~~~~~~~~~~  134 (433)
                                     .+...+...+++.+|++..+.. .-++|..-.+.-.++  ..+.++++|+|||+.-  ++.||+.
T Consensus       116 ~dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~g-sf~~p~~V~v~k~dg~~~ii~aKnIiiATGSeV--~~~PGI~  192 (506)
T KOG1335|consen  116 LDLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFG-SFLDPNKVSVKKIDGEDQIIKAKNIIIATGSEV--TPFPGIT  192 (506)
T ss_pred             cCHHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeE-eecCCceEEEeccCCCceEEeeeeEEEEeCCcc--CCCCCeE
Confidence                           0111233456678888888743 333443333444444  4789999999999953  2321221


Q ss_pred             CCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHH
Q 013952          135 GADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYY  214 (433)
Q Consensus       135 g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l  214 (433)
                       .+.+.+.++........        -|++++|||+|++|+|+..-+.++|.+||+++-.+.+.+. +|.++++.+++.|
T Consensus       193 -IDekkIVSStgALsL~~--------vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~-mD~Eisk~~qr~L  262 (506)
T KOG1335|consen  193 -IDEKKIVSSTGALSLKE--------VPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV-MDGEISKAFQRVL  262 (506)
T ss_pred             -ecCceEEecCCccchhh--------CcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc-cCHHHHHHHHHHH
Confidence             24456666554444433        4899999999999999999999999999999999999887 8999999999999


Q ss_pred             HhcCcEEEcCCeEEEEEecCCCcEEEEEeC---CC--cEEECCEEEEcccCccChhhh---hccccc-CCCcEEeCCCCC
Q 013952          215 ANKGIKIIKGTVAVGFTTNADGEVKEVKLK---DG--RTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFK  285 (433)
Q Consensus       215 ~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~---~g--~~i~~d~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~  285 (433)
                      ++.|++|+++++|..++.+.+|.+ .+++.   ++  ++++||.+++++|++|-+.-+   +-++.. ..+.+.||..++
T Consensus       263 ~kQgikF~l~tkv~~a~~~~dg~v-~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~~~f~  341 (506)
T KOG1335|consen  263 QKQGIKFKLGTKVTSATRNGDGPV-EIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVNTRFQ  341 (506)
T ss_pred             HhcCceeEeccEEEEeeccCCCce-EEEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcccccccccceecccccc
Confidence            999999999999999998777643 34442   22  479999999999999988755   345555 578899999999


Q ss_pred             CCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCC---
Q 013952          286 TSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV---  362 (433)
Q Consensus       286 t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~---  362 (433)
                      |.+|+||++||+...|+.          +..|..||-.+.+.|.+...   ...|..+|.+.++.|+++|+  |.++   
T Consensus       342 t~vP~i~~IGDv~~gpML----------AhkAeeegI~~VE~i~g~~~---hv~ynciP~v~ythPEvawV--G~TEeql  406 (506)
T KOG1335|consen  342 TKVPHIYAIGDVTLGPML----------AHKAEEEGIAAVEGIAGGHG---HVDYNCIPSVVYTHPEVAWV--GKTEEQL  406 (506)
T ss_pred             ccCCceEEecccCCcchh----------hhhhhhhchhheeeecccCc---ccccCCCCceeecccceeee--ccchhhH
Confidence            999999999999999865          55577889988888887643   38999999999999999999  6554   


Q ss_pred             ---CcEEEEcCCCcc--------ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhcccCCC
Q 013952          363 ---GDTVLFGDNDLA--------SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLS  428 (433)
Q Consensus       363 ---~~~~~~~~~~~~--------~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  428 (433)
                         +..+..|..+..        ...++|.|+..  +++||||+||+|+.|.|+ +.+.+||.-+.+.+|.+..--+-++
T Consensus       407 keegi~y~vgkfpF~aNsRaktn~d~eg~vKvl~d~~tdkiLGvHiigp~AgEli~EA~lAieyGasaeDvarvchaHPT  486 (506)
T KOG1335|consen  407 KEEGIKYKVGKFPFSANSRAKTNNDTEGFVKVLADKETDKILGVHIIGPNAGELIHEASLAIEYGASAEDVARVCHAHPT  486 (506)
T ss_pred             HhcCcceEeeeccccccchhhccCCccceeEEEecCCCCcEEEEEEecCCHHHHHHHHHHHHHhCccHHHHhhccCCCCc
Confidence               456777776654        34678999877  799999999999999996 9999999999999998865444333

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=100.00  E-value=7.7e-43  Score=322.14  Aligned_cols=311  Identities=26%  Similarity=0.371  Sum_probs=250.0

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHh
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   83 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (433)
                      +++|||||||++|+.+|..|.+.. ++.+|++||++ .+.| .+.+....     ...++.      ......+...+++
T Consensus         3 ~~~iVIlGgGfgGl~~a~~l~~~~-~~~~itLVd~~~~hl~-~plL~eva-----~g~l~~------~~i~~p~~~~~~~   69 (405)
T COG1252           3 KKRIVILGGGFGGLSAAKRLARKL-PDVEITLVDRRDYHLF-TPLLYEVA-----TGTLSE------SEIAIPLRALLRK   69 (405)
T ss_pred             CceEEEECCcHHHHHHHHHhhhcC-CCCcEEEEeCCCcccc-chhhhhhh-----cCCCCh------hheeccHHHHhcc
Confidence            578999999999999999999975 34569999999 4444 33332211     111110      0112345666665


Q ss_pred             CC-cEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHh---
Q 013952           84 KG-IELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKA---  159 (433)
Q Consensus        84 ~~-v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~---  159 (433)
                      .+ ++|+++ +|++||+++++|++.+++.+.||+||+|+|+.+..+.   +||.. +..+.+++++++.+++..+..   
T Consensus        70 ~~~v~~~~~-~V~~ID~~~k~V~~~~~~~i~YD~LVvalGs~~~~fg---i~G~~-E~a~~lks~edA~~ir~~l~~~fe  144 (405)
T COG1252          70 SGNVQFVQG-EVTDIDRDAKKVTLADLGEISYDYLVVALGSETNYFG---IPGAA-EYAFGLKTLEDALRLRRHLLEAFE  144 (405)
T ss_pred             cCceEEEEE-EEEEEcccCCEEEeCCCccccccEEEEecCCcCCcCC---CCCHH-HhCCCCCCHHHHHHHHHHHHHHHH
Confidence            55 999997 9999999999999999888999999999999987665   67754 667888999999998887751   


Q ss_pred             ----cCC----CcEEEECCCHHHHHHHHHHHhCC-------------CeEEEEccCCccCCCCCCHHHHHHHHHHHHhcC
Q 013952          160 ----KKN----GKAVVVGGGYIGLELSAALKINN-------------IDVSMVYPEPWCMPRLFTADIAAFYEGYYANKG  218 (433)
Q Consensus       160 ----~~~----~~v~ViG~G~~g~e~a~~l~~~g-------------~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~G  218 (433)
                          ...    .+++|+|+|++|+|+|..|.++-             .+|+++++.+++++. +++++++..++.|++.|
T Consensus       145 ~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~-~~~~l~~~a~~~L~~~G  223 (405)
T COG1252         145 KASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPM-FPPKLSKYAERALEKLG  223 (405)
T ss_pred             HhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccC-CCHHHHHHHHHHHHHCC
Confidence                111    26899999999999999886541             389999999999997 89999999999999999


Q ss_pred             cEEEcCCeEEEEEecCCCcEEEEEeCCCc-EEECCEEEEcccCccChhhhh-cccccC-CCcEEeCCCCCC-CCCCeEEc
Q 013952          219 IKIIKGTVAVGFTTNADGEVKEVKLKDGR-TLEADIVVVGVGGRPLISLFK-GQVAEN-KGGIETDDFFKT-SADDVYAV  294 (433)
Q Consensus       219 V~v~~~~~v~~i~~~~~g~~~~v~~~~g~-~i~~d~vi~a~G~~p~~~~~~-~~~~~~-~g~i~vd~~~~t-~~~~vfa~  294 (433)
                      |++++++.|++++.  +    .|.+++|+ +|+++.+|||+|.+++...-+ .+.+.+ .|++.||++||+ ++|+|||+
T Consensus       224 V~v~l~~~Vt~v~~--~----~v~~~~g~~~I~~~tvvWaaGv~a~~~~~~l~~~e~dr~Grl~V~~~L~~~~~~~IFa~  297 (405)
T COG1252         224 VEVLLGTPVTEVTP--D----GVTLKDGEEEIPADTVVWAAGVRASPLLKDLSGLETDRRGRLVVNPTLQVPGHPDIFAA  297 (405)
T ss_pred             CEEEcCCceEEECC--C----cEEEccCCeeEecCEEEEcCCCcCChhhhhcChhhhccCCCEEeCCCcccCCCCCeEEE
Confidence            99999999999986  3    57888887 499999999999999887665 356654 699999999998 99999999


Q ss_pred             CccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCC
Q 013952          295 GDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLP  344 (433)
Q Consensus       295 Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p  344 (433)
                      |||+...+.    ...++.++.|.+||+.+|+||.....++++.+|.+..
T Consensus       298 GD~A~~~~~----~p~P~tAQ~A~Qqg~~~a~ni~~~l~g~~l~~f~y~~  343 (405)
T COG1252         298 GDCAAVIDP----RPVPPTAQAAHQQGEYAAKNIKARLKGKPLKPFKYKD  343 (405)
T ss_pred             eccccCCCC----CCCCChhHHHHHHHHHHHHHHHHHhcCCCCCCCcccc
Confidence            999988764    1123788999999999999999998887777777643

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=7.5e-43  Score=303.57  Aligned_cols=387  Identities=18%  Similarity=0.220  Sum_probs=283.0

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-C----CCCCCCCccccccCCCCC-CC-------------CCCc
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-V----APYERPALSKAYLFPEGT-AR-------------LPGF   65 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~----~~~~~~~~~~~~~~~~~~-~~-------------~~~~   65 (433)
                      .||++|||||..|+++|+++++.|.+   +.|+|.. .    +....|.+.+-+++.... ..             .+.|
T Consensus        20 ~fDylvIGgGSGGvasARrAa~~GAk---v~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~f   96 (478)
T KOG0405|consen   20 DFDYLVIGGGSGGVASARRAASHGAK---VALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGSF   96 (478)
T ss_pred             ccceEEEcCCcchhHHhHHHHhcCce---EEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccCC
Confidence            68999999999999999999999988   8999877 1    222223333333322211 00             1111


Q ss_pred             ccccCCC----CCC----CCHhHHHhCCcEEEeCceEEEEECCCCEEEeCCCc--EEecceEEEccCCCccccCCCCCCC
Q 013952           66 HVCVGSG----GER----LLPEWYKEKGIELILSTEIVRADIASKTLLSATGL--IFKYQILVIATGSTVLRLTDFGVEG  135 (433)
Q Consensus        66 ~~~~~~~----~~~----~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~--~~~~d~lvlAtG~~~~~~~~~~~~g  135 (433)
                      .+..-..    ...    .+...+.+.+|+++.+ +..-+++..-.|...++.  .+++.+++||||++|..|+   |||
T Consensus        97 dW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G-~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~~Pn---IpG  172 (478)
T KOG0405|consen   97 DWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEG-RARFVSPGEVEVEVNDGTKIVYTAKHILIATGGRPIIPN---IPG  172 (478)
T ss_pred             cHHHHHhhhhHHHHHHHHHHHhhccccceeEEee-eEEEcCCCceEEEecCCeeEEEecceEEEEeCCccCCCC---CCc
Confidence            1100000    000    1122234567888888 444455555566666663  3789999999999999997   676


Q ss_pred             CCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHH
Q 013952          136 ADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYA  215 (433)
Q Consensus       136 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~  215 (433)
                      .+.  -..++.+.+.+.        .|++++|+|+|++++|+|..++.+|.+++++-|.+.+++. ||+.+++.+.+.++
T Consensus       173 ~E~--gidSDgff~Lee--------~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR~-FD~~i~~~v~~~~~  241 (478)
T KOG0405|consen  173 AEL--GIDSDGFFDLEE--------QPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRG-FDEMISDLVTEHLE  241 (478)
T ss_pred             hhh--ccccccccchhh--------cCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhcc-hhHHHHHHHHHHhh
Confidence            531  112222222222        5899999999999999999999999999999999999987 89999999999999


Q ss_pred             hcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh---hccccc-CCCcEEeCCCCCCCCCCe
Q 013952          216 NKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSADDV  291 (433)
Q Consensus       216 ~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~v  291 (433)
                      ..||++|.++.++++....++.. .+.+..|....+|.++||+|+.||+.-+   +.++.+ .+|.|.||++.+||+|+|
T Consensus       242 ~~ginvh~~s~~~~v~K~~~g~~-~~i~~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeYq~Tnvp~I  320 (478)
T KOG0405|consen  242 GRGINVHKNSSVTKVIKTDDGLE-LVITSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEYQNTNVPSI  320 (478)
T ss_pred             hcceeecccccceeeeecCCCce-EEEEeccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEeccccCCCCce
Confidence            99999999999999988656644 3444555555699999999999999855   446666 678899999999999999


Q ss_pred             EEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCCCc-------
Q 013952          292 YAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGD-------  364 (433)
Q Consensus       292 fa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~-------  364 (433)
                      |++||+++.-          .+...|+.+|+..+..+++.... ...+|..+|...+..|.+..+  |+++.+       
T Consensus       321 ~avGDv~gk~----------~LTPVAiaagr~la~rlF~~~~~-~kldY~nVp~vVFshP~igtV--GLtE~EAiekyg~  387 (478)
T KOG0405|consen  321 WAVGDVTGKI----------NLTPVAIAAGRKLANRLFGGGKD-TKLDYENVPCVVFSHPPIGTV--GLTEEEAIEKYGK  387 (478)
T ss_pred             EEeccccCcE----------ecchHHHhhhhhHHHHhhcCCCC-CccccccCceEEEecCCcccc--cCCHHHHHHHhCc
Confidence            9999999865          34566888999999999985322 248999999999888888766  666522       


Q ss_pred             ---EEEEcCCCcc------ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhc
Q 013952          365 ---TVLFGDNDLA------SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLK  423 (433)
Q Consensus       365 ---~~~~~~~~~~------~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~  423 (433)
                         .++.....+.      .....+.|+++  ++.+++|+||+|+.+.|| +-++.|+..|.|..|++...
T Consensus       388 ~~i~vy~s~F~pm~~a~~~~k~kt~mKlvc~~~~eKVvG~hm~G~~s~EilQGf~VAvKmGaTKadFD~tV  458 (478)
T KOG0405|consen  388 GDIKVYTSKFNPMKYAMSGRKEKTLMKLVCAGKSEKVVGVHMCGDDSAEILQGFAVAVKMGATKADFDSTV  458 (478)
T ss_pred             cceEEEecCCchhHhHhhcCCcceEEEEEEecCCCcEEEEEEecCCcHHHHhhhhhheecCcchhhhccce
Confidence               1222222221      22345566666  899999999999999997 99999999999999988543

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=100.00  E-value=7.4e-41  Score=322.84  Aligned_cols=301  Identities=21%  Similarity=0.262  Sum_probs=232.9

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHh
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   83 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (433)
                      ++++|||||||+||+++|+.|.+.+.   +|+|||++...+..+.+...........           .....+...+..
T Consensus         9 ~~~~vVIvGgG~aGl~~a~~L~~~~~---~ItlI~~~~~~~~~~~l~~~~~g~~~~~-----------~~~~~~~~~~~~   74 (424)
T PTZ00318          9 KKPNVVVLGTGWAGAYFVRNLDPKKY---NITVISPRNHMLFTPLLPQTTTGTLEFR-----------SICEPVRPALAK   74 (424)
T ss_pred             CCCeEEEECCCHHHHHHHHHhCcCCC---eEEEEcCCCCcchhhhHHHhcccCCChH-----------HhHHHHHHHhcc
Confidence            35799999999999999998865444   4999999933333343322111000000           001123444556


Q ss_pred             CCcEEEeCceEEEEECCCCEEEe----------CCCcEEecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHH
Q 013952           84 KGIELILSTEIVRADIASKTLLS----------ATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKL  153 (433)
Q Consensus        84 ~~v~~~~~~~v~~i~~~~~~v~~----------~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~  153 (433)
                      .+++++.+ +|..||++++.|.+          .++.++.||+||||||+.+..++   +||.. ..++.++++.++..+
T Consensus        75 ~~~~~i~~-~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~~---ipG~~-e~~~~~~~~~~a~~~  149 (424)
T PTZ00318         75 LPNRYLRA-VVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTFN---IPGVE-ERAFFLKEVNHARGI  149 (424)
T ss_pred             CCeEEEEE-EEEEEEcCCCEEEEecccccccccCCceEecCCEEEECCCcccCCCC---CCCHH-HcCCCCCCHHHHHHH
Confidence            78899886 99999999999887          45668999999999999988776   57754 356778888888887


Q ss_pred             HHHHHhc---------------CCCcEEEECCCHHHHHHHHHHHh--------------CCCeEEEEccCCccCCCCCCH
Q 013952          154 VEAIKAK---------------KNGKAVVVGGGYIGLELSAALKI--------------NNIDVSMVYPEPWCMPRLFTA  204 (433)
Q Consensus       154 ~~~~~~~---------------~~~~v~ViG~G~~g~e~a~~l~~--------------~g~~V~li~~~~~~~~~~~~~  204 (433)
                      ++.+.++               ..++++|||+|++|+|+|..|..              .+.+|+++++.+.+++. +++
T Consensus       150 ~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~-~~~  228 (424)
T PTZ00318        150 RKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGS-FDQ  228 (424)
T ss_pred             HHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccccc-CCH
Confidence            7665321               12489999999999999999875              37899999999988885 799


Q ss_pred             HHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhhhccccc-CCCcEEeCCC
Q 013952          205 DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDF  283 (433)
Q Consensus       205 ~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~  283 (433)
                      ++.+.+++.|++.||+++++++|.++..  +    .+.+++|+++++|.+|+++|.+|+..+...++.. ++|+|.||++
T Consensus       229 ~~~~~~~~~L~~~gV~v~~~~~v~~v~~--~----~v~~~~g~~i~~d~vi~~~G~~~~~~~~~~~l~~~~~G~I~Vd~~  302 (424)
T PTZ00318        229 ALRKYGQRRLRRLGVDIRTKTAVKEVLD--K----EVVLKDGEVIPTGLVVWSTGVGPGPLTKQLKVDKTSRGRISVDDH  302 (424)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCeEEEEeC--C----EEEECCCCEEEccEEEEccCCCCcchhhhcCCcccCCCcEEeCCC
Confidence            9999999999999999999999999975  2    4678889999999999999999985433445655 5789999999


Q ss_pred             CC-CCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCC
Q 013952          284 FK-TSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGK  335 (433)
Q Consensus       284 ~~-t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~  335 (433)
                      || +++|||||+|||+..+..+     ..+++..|.+||+++|.||.+...++
T Consensus       303 l~~~~~~~IfAiGD~a~~~~~~-----~~~~~~~A~~qg~~~A~ni~~~l~g~  350 (424)
T PTZ00318        303 LRVKPIPNVFALGDCAANEERP-----LPTLAQVASQQGVYLAKEFNNELKGK  350 (424)
T ss_pred             cccCCCCCEEEEeccccCCCCC-----CCCchHHHHHHHHHHHHHHHHHhcCC
Confidence            99 5999999999999864321     12678889999999999999877654

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=100.00  E-value=6.2e-39  Score=305.08  Aligned_cols=305  Identities=22%  Similarity=0.300  Sum_probs=235.5

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhCC
Q 013952            7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKG   85 (433)
Q Consensus         7 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (433)
                      +|||||||+||+.+|..|+++..+..+|+|||++ ...|... +.. +....    ..      ..+......+++++.+
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~-~~~-~~~g~----~~------~~~~~~~~~~~~~~~g   68 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGM-LPG-MIAGH----YS------LDEIRIDLRRLARQAG   68 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccch-hhH-HHhee----CC------HHHhcccHHHHHHhcC
Confidence            5899999999999999997653345679999999 5555432 211 11000    00      0011233456677789


Q ss_pred             cEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHh-----c
Q 013952           86 IELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKA-----K  160 (433)
Q Consensus        86 v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~-----~  160 (433)
                      ++++.+ .|..||+++++|.+.++++++||+||||||+.+..|+   +|| ..++++.+++.+++....+.+..     .
T Consensus        69 v~~~~~-~v~~id~~~~~V~~~~g~~~~yD~LviAtG~~~~~~~---i~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (364)
T TIGR03169        69 ARFVIA-EATGIDPDRRKVLLANRPPLSYDVLSLDVGSTTPLSG---VEG-AADLAVPVKPIENFLARWEALLESADAPP  143 (364)
T ss_pred             CEEEEE-EEEEEecccCEEEECCCCcccccEEEEccCCCCCCCC---CCc-ccccccccCCHHHHHHHHHHHHHHHhcCC
Confidence            999986 8999999999999999989999999999999998777   566 34677888888777663333321     1


Q ss_pred             CCCcEEEECCCHHHHHHHHHHHh----CC--CeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecC
Q 013952          161 KNGKAVVVGGGYIGLELSAALKI----NN--IDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNA  234 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~----~g--~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~  234 (433)
                      ..++++|+|+|++|+|+|..|.+    .|  .+|+++ ..+.+++. +++++.+.+++.+++.||++++++.+.+++.  
T Consensus       144 ~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l~~-~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~--  219 (364)
T TIGR03169       144 GTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASLLPG-FPAKVRRLVLRLLARRGIEVHEGAPVTRGPD--  219 (364)
T ss_pred             CCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCccccc-CCHHHHHHHHHHHHHCCCEEEeCCeeEEEcC--
Confidence            35799999999999999999875    34  589999 55666665 7889999999999999999999999999864  


Q ss_pred             CCcEEEEEeCCCcEEECCEEEEcccCccChhhhhccccc-CCCcEEeCCCCCC-CCCCeEEcCccccccccccCcccccc
Q 013952          235 DGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKT-SADDVYAVGDVATFPMKLYREMRRVE  312 (433)
Q Consensus       235 ~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t-~~~~vfa~Gd~~~~~~~~~~~~~~~~  312 (433)
                      +    .+.+.+|+++++|.+|+|+|.+|+..+...++.. .+|++.||+++|| +.|||||+|||+..+..+.     .+
T Consensus       220 ~----~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~gl~~~~~g~i~vd~~l~~~~~~~Iya~GD~~~~~~~~~-----~~  290 (364)
T TIGR03169       220 G----ALILADGRTLPADAILWATGARAPPWLAESGLPLDEDGFLRVDPTLQSLSHPHVFAAGDCAVITDAPR-----PK  290 (364)
T ss_pred             C----eEEeCCCCEEecCEEEEccCCChhhHHHHcCCCcCCCCeEEECCccccCCCCCEEEeeeeeecCCCCC-----CC
Confidence            2    4677888899999999999999997666666666 5689999999998 9999999999997653211     15


Q ss_pred             cHHHHHHHHHHHHHHHhccCCCCCccCCC
Q 013952          313 HVDHARKSAEQAVKTIMATEGGKTVTGYD  341 (433)
Q Consensus       313 ~~~~A~~~g~~aa~~i~~~~~~~~~~~~~  341 (433)
                      .+..|..||+++|+||.....++++.+|.
T Consensus       291 ~~~~A~~~g~~~a~ni~~~l~g~~~~~~~  319 (364)
T TIGR03169       291 AGVYAVRQAPILAANLRASLRGQPLRPFR  319 (364)
T ss_pred             chHHHHHhHHHHHHHHHHHhcCCCCCCCc
Confidence            67789999999999999887776555544

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PRK10262 thioredoxin reductase; Provisional

Probab=100.00  E-value=1.7e-37  Score=289.82  Aligned_cols=293  Identities=20%  Similarity=0.195  Sum_probs=212.1

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCccccc-CCCCCCCCHhHH
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVCV-GSGGERLLPEWY   81 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~   81 (433)
                      ..+||+|||||||||+||.+|+++|++   ++++|.. ...        .+......+.+|+..... +......+.+..
T Consensus         5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~---~~~ie~~~~gg--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (321)
T PRK10262          5 KHSKLLILGSGPAGYTAAVYAARANLQ---PVLITGMEKGG--------QLTTTTEVENWPGDPNDLTGPLLMERMHEHA   73 (321)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCC---eEEEEeecCCC--------ceecCceECCCCCCCCCCCHHHHHHHHHHHH
Confidence            468999999999999999999999987   8999854 111        011111112223221100 001122334555


Q ss_pred             HhCCcEEEeCceEEEEECCCCEEEeC-CCcEEecceEEEccCCCccccCCCCCCCCC---CCCEEEecCHHHHHHHHHHH
Q 013952           82 KEKGIELILSTEIVRADIASKTLLSA-TGLIFKYQILVIATGSTVLRLTDFGVEGAD---AKNIFYLREIDDADKLVEAI  157 (433)
Q Consensus        82 ~~~~v~~~~~~~v~~i~~~~~~v~~~-~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~---~~~v~~~~~~~~~~~~~~~~  157 (433)
                      ..+++++..+ .+..++...+.+.+. +..++.||+||+|||+.|+.|+   +||.+   ...++.+.......      
T Consensus        74 ~~~~~~~~~~-~v~~v~~~~~~~~v~~~~~~~~~d~vilAtG~~~~~~~---i~g~~~~~~~~v~~~~~~~~~~------  143 (321)
T PRK10262         74 TKFETEIIFD-HINKVDLQNRPFRLTGDSGEYTCDALIIATGASARYLG---LPSEEAFKGRGVSACATCDGFF------  143 (321)
T ss_pred             HHCCCEEEee-EEEEEEecCCeEEEEecCCEEEECEEEECCCCCCCCCC---CCCHHHcCCCcEEEeecCCHHH------
Confidence            5677777775 677787766654332 2347899999999999998777   45532   33454443333211      


Q ss_pred             HhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCc
Q 013952          158 KAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGE  237 (433)
Q Consensus       158 ~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~  237 (433)
                        ..+++++|||+|++|+|+|..|.+.+.+|+++++.+.+.   .++.+.+.+++.+++.||++++++.+.++.. +++.
T Consensus       144 --~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~---~~~~~~~~~~~~l~~~gV~i~~~~~v~~v~~-~~~~  217 (321)
T PRK10262        144 --YRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR---AEKILIKRLMDKVENGNIILHTNRTLEEVTG-DQMG  217 (321)
T ss_pred             --cCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC---CCHHHHHHHHhhccCCCeEEEeCCEEEEEEc-CCcc
Confidence              158999999999999999999999999999999987653   3577888889999999999999999999986 2334


Q ss_pred             EEEEEeCCC------cEEECCEEEEcccCccChhhhhcccccCCCcEEeCC-----CCCCCCCCeEEcCccccccccccC
Q 013952          238 VKEVKLKDG------RTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDD-----FFKTSADDVYAVGDVATFPMKLYR  306 (433)
Q Consensus       238 ~~~v~~~~g------~~i~~d~vi~a~G~~p~~~~~~~~~~~~~g~i~vd~-----~~~t~~~~vfa~Gd~~~~~~~~~~  306 (433)
                      +..+++.++      +++++|.|++++|++|+..+++.++..++|+|.||+     +++|++|+|||+|||+..+.    
T Consensus       218 ~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~l~~~~l~~~~g~i~vd~~~~~~~~~t~~~~VyA~GD~~~~~~----  293 (321)
T PRK10262        218 VTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIY----  293 (321)
T ss_pred             EEEEEEEEcCCCCeEEEEECCEEEEEeCCccChhHhhccccccCCEEEECCCCcccccccCCCCEEECeeccCCCc----
Confidence            445655432      479999999999999999988766666778999997     78999999999999996542    


Q ss_pred             cccccccHHHHHHHHHHHHHHHhccC
Q 013952          307 EMRRVEHVDHARKSAEQAVKTIMATE  332 (433)
Q Consensus       307 ~~~~~~~~~~A~~~g~~aa~~i~~~~  332 (433)
                           +.+..|+.+|..||..|....
T Consensus       294 -----~~~~~A~~~g~~Aa~~~~~~l  314 (321)
T PRK10262        294 -----RQAITSAGTGCMAALDAERYL  314 (321)
T ss_pred             -----ceEEEEehhHHHHHHHHHHHH
Confidence                 334447789999998887654

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=100.00  E-value=7e-37  Score=283.94  Aligned_cols=285  Identities=24%  Similarity=0.313  Sum_probs=209.7

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccc-cCCCCCCCCHhHHHhC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVC-VGSGGERLLPEWYKEK   84 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   84 (433)
                      |||+|||||+||++||..|++.|.+   |+|+|++. +      .+.+........+|++... .+......+.+.+++.
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~-~------gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   70 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARANLK---TLIIEGME-P------GGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKF   70 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCC---EEEEeccC-C------CcceeecccccccCCCCCCCChHHHHHHHHHHHHHc
Confidence            6999999999999999999999987   99999872 1      1111111111222332210 0111223455667788


Q ss_pred             CcEEEeCceEEEEECCCC--EEEeCCCcEEecceEEEccCCCccccCCCCCCCCC---CCCEEEecCHHHHHHHHHHHHh
Q 013952           85 GIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRLTDFGVEGAD---AKNIFYLREIDDADKLVEAIKA  159 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~---~~~v~~~~~~~~~~~~~~~~~~  159 (433)
                      +++++. ..|..+++.++  .+.+.++.++.||+||+|||+.|..|+   +||.+   ...++........        .
T Consensus        71 gv~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~---i~g~~~~~~~~~~~~~~~~~~--------~  138 (300)
T TIGR01292        71 GAEIIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASARKLG---IPGEDEFLGRGVSYCATCDGP--------F  138 (300)
T ss_pred             CCeEEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCcccCC---CCChhhcCCccEEEeeecChh--------h
Confidence            999998 69999998765  456667778999999999999887766   45532   2344433222211        1


Q ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhc-CcEEEcCCeEEEEEecCCCcE
Q 013952          160 KKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEV  238 (433)
Q Consensus       160 ~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~-GV~v~~~~~v~~i~~~~~g~~  238 (433)
                      .++++++|+|+|.+|+|+|..|.+.+.+|+++.+.+.+..   .    ..+.+.+++. ||++++++.+.++..  ++++
T Consensus       139 ~~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~---~----~~~~~~l~~~~gv~~~~~~~v~~i~~--~~~~  209 (300)
T TIGR01292       139 FKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRA---E----KILLDRLRKNPNIEFLWNSTVKEIVG--DNKV  209 (300)
T ss_pred             cCCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccCc---C----HHHHHHHHhCCCeEEEeccEEEEEEc--cCcE
Confidence            1578999999999999999999999999999998876532   2    3345566676 999999999999986  4455


Q ss_pred             EEEEeC-----CCcEEECCEEEEcccCccChhhhhccccc-CCCcEEeCCCCCCCCCCeEEcCccccccccccCcccccc
Q 013952          239 KEVKLK-----DGRTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVE  312 (433)
Q Consensus       239 ~~v~~~-----~g~~i~~d~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~  312 (433)
                      ..+++.     +++++++|.+++|+|++|+.++++..+.. .+|++.||++++|++||||++|||+....         +
T Consensus       210 ~~v~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~l~~~~~~~~~g~i~v~~~~~t~~~~vya~GD~~~~~~---------~  280 (300)
T TIGR01292       210 EGVKIKNTVTGEEEELKVDGVFIAIGHEPNTELLKGLLELDEGGYIVTDEGMRTSVPGVFAAGDVRDKGY---------R  280 (300)
T ss_pred             EEEEEEecCCCceEEEEccEEEEeeCCCCChHHHHHhheecCCCcEEECCCCccCCCCEEEeecccCcch---------h
Confidence            455542     23579999999999999999887654444 56899999999999999999999997421         5


Q ss_pred             cHHHHHHHHHHHHHHHhc
Q 013952          313 HVDHARKSAEQAVKTIMA  330 (433)
Q Consensus       313 ~~~~A~~~g~~aa~~i~~  330 (433)
                      .+..|..+|+.||.+|..
T Consensus       281 ~~~~A~~~g~~aa~~i~~  298 (300)
T TIGR01292       281 QAVTAAGDGCIAALSAER  298 (300)
T ss_pred             hhhhhhhhHHHHHHHHHh
Confidence            678899999999999875

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=100.00  E-value=4.8e-37  Score=302.77  Aligned_cols=286  Identities=22%  Similarity=0.295  Sum_probs=211.3

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-C-CCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHH
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-V-APYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK   82 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (433)
                      .|||+||||||||++||.+|++.|++   |+|+++. . .+...          ....++.+.+...+......+.+.++
T Consensus       212 ~~dVvIIGgGpAGl~AA~~la~~G~~---v~li~~~~GG~~~~~----------~~~~~~~~~~~~~~~~l~~~l~~~l~  278 (515)
T TIGR03140       212 PYDVLVVGGGPAGAAAAIYAARKGLR---TAMVAERIGGQVKDT----------VGIENLISVPYTTGSQLAANLEEHIK  278 (515)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCCccccC----------cCcccccccCCCCHHHHHHHHHHHHH
Confidence            58999999999999999999999988   9999765 1 11110          00111111111111122334556677


Q ss_pred             hCCcEEEeCceEEEEECCCC--EEEeCCCcEEecceEEEccCCCccccCCCCCCCC---CCCCEEEecCHHHHHHHHHHH
Q 013952           83 EKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRLTDFGVEGA---DAKNIFYLREIDDADKLVEAI  157 (433)
Q Consensus        83 ~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~~~~~~~  157 (433)
                      +.+++++.++.|..++.+.+  .+.+.++.++.||++|+|||+.|+.|+   +||.   ...+++.+.......      
T Consensus       279 ~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~~~~---ipG~~~~~~~~v~~~~~~~~~~------  349 (515)
T TIGR03140       279 QYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWRKLG---VPGEKEYIGKGVAYCPHCDGPF------  349 (515)
T ss_pred             HhCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCcCCCC---CCCHHHcCCCeEEEeeccChhh------
Confidence            78999999989999887653  566677888999999999999987776   4553   223455443322211      


Q ss_pred             HhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHh-cCcEEEcCCeEEEEEecCCC
Q 013952          158 KAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADG  236 (433)
Q Consensus       158 ~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~-~GV~v~~~~~v~~i~~~~~g  236 (433)
                        ..+++++|||+|++|+|+|..|+..+.+|+++++.+.+..       ...+.+.+++ .||++++++.+.++.. +++
T Consensus       350 --~~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~-------~~~l~~~l~~~~gV~i~~~~~v~~i~~-~~~  419 (515)
T TIGR03140       350 --FKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKA-------DKVLQDKLKSLPNVDILTSAQTTEIVG-DGD  419 (515)
T ss_pred             --cCCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCCh-------hHHHHHHHhcCCCCEEEECCeeEEEEc-CCC
Confidence              1578999999999999999999999999999988776532       2345666665 6999999999999986 335


Q ss_pred             cEEEEEeCC---C--cEEECCEEEEcccCccChhhhhccccc-CCCcEEeCCCCCCCCCCeEEcCccccccccccCcccc
Q 013952          237 EVKEVKLKD---G--RTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRR  310 (433)
Q Consensus       237 ~~~~v~~~~---g--~~i~~d~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~  310 (433)
                      ++..|.+.+   +  +++++|.|++++|++|++++++..+.. .+|+|.||+++||++|+|||+|||+..+.        
T Consensus       420 ~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~Pn~~~l~~~~~~~~~G~I~vd~~~~Ts~p~IyAaGDv~~~~~--------  491 (515)
T TIGR03140       420 KVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWLKDAVELNRRGEIVIDERGRTSVPGIFAAGDVTTVPY--------  491 (515)
T ss_pred             EEEEEEEEECCCCcEEEEEcCEEEEEeCCcCCchHHhhhcccCCCCeEEECCCCCCCCCCEEEcccccCCcc--------
Confidence            666676643   2  469999999999999999988655555 56889999999999999999999998654        


Q ss_pred             cccHHHHHHHHHHHHHHHhcc
Q 013952          311 VEHVDHARKSAEQAVKTIMAT  331 (433)
Q Consensus       311 ~~~~~~A~~~g~~aa~~i~~~  331 (433)
                       +++..|+.+|..||.+|...
T Consensus       492 -~~~~~A~~~G~~Aa~~i~~~  511 (515)
T TIGR03140       492 -KQIIIAMGEGAKAALSAFDY  511 (515)
T ss_pred             -ceEEEEEccHHHHHHHHHHH
Confidence             23445788999999988754

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.3e-37  Score=266.22  Aligned_cols=286  Identities=24%  Similarity=0.274  Sum_probs=218.8

Q ss_pred             cEEecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEE
Q 013952          110 LIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVS  189 (433)
Q Consensus       110 ~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~  189 (433)
                      +.+++++++||||.+|+.|+   |||.. +--.+++++.....        .|.+.+|||+|++++|+|.+|+-.|.+|+
T Consensus       158 ~~~ta~~fvIatG~RPrYp~---IpG~~-Ey~ITSDDlFsl~~--------~PGkTLvVGa~YVaLECAgFL~gfg~~vt  225 (503)
T KOG4716|consen  158 RFLTAENFVIATGLRPRYPD---IPGAK-EYGITSDDLFSLPY--------EPGKTLVVGAGYVALECAGFLKGFGYDVT  225 (503)
T ss_pred             EEeecceEEEEecCCCCCCC---CCCce-eeeecccccccccC--------CCCceEEEccceeeeehhhhHhhcCCCcE
Confidence            46899999999999999888   67743 22334444443332        47788999999999999999999999999


Q ss_pred             EEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCC---C--cEEECCEEEEcccCccCh
Q 013952          190 MVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD---G--RTLEADIVVVGVGGRPLI  264 (433)
Q Consensus       190 li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~---g--~~i~~d~vi~a~G~~p~~  264 (433)
                      ++.|+- +++. ||.++++.+.+.+++.||+|.....+.+++.-++++. .|...+   +  -+-++|.|+||+|+++.+
T Consensus       226 VmVRSI-~LrG-FDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l-~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~  302 (503)
T KOG4716|consen  226 VMVRSI-LLRG-FDQDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKL-RVFYKNTNTGEEGEEEYDTVLWAIGRKALT  302 (503)
T ss_pred             EEEEEe-eccc-ccHHHHHHHHHHHHHhCCceeecccceeeeeccCCcE-EEEeecccccccccchhhhhhhhhccccch
Confidence            998863 4443 8999999999999999999999988888887666652 333322   2  245789999999999998


Q ss_pred             hhh---hccccc--CCCcEEeCCCCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccC
Q 013952          265 SLF---KGQVAE--NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTG  339 (433)
Q Consensus       265 ~~~---~~~~~~--~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~  339 (433)
                      +-+   +.++..  ..+-|.+|+.-+|++|+|||+||+.....         ++...|++.|+..|+.+++....  ...
T Consensus       303 ~~l~L~~~GVk~n~ks~KI~v~~~e~t~vp~vyAvGDIl~~kp---------ELTPvAIqsGrlLa~Rlf~gs~q--~~d  371 (503)
T KOG4716|consen  303 DDLNLDNAGVKTNEKSGKIPVDDEEATNVPYVYAVGDILEDKP---------ELTPVAIQSGRLLARRLFAGSTQ--LMD  371 (503)
T ss_pred             hhcCCCccceeecccCCccccChHHhcCCCceEEecceecCCc---------ccchhhhhhchHHHHHHhcCcce--eee
Confidence            755   345555  46789999999999999999999987543         66778999999999999987544  489


Q ss_pred             CCCCCeEEEeecccceEEecCCCCcE---------EEE-cCCCcc-------ccCCcEEEEEE---eCCEEEEEEEecCC
Q 013952          340 YDYLPYFYSRAFDLSWQFYGDNVGDT---------VLF-GDNDLA-------SATHKFGTYWI---KDGKVVGVFLESGT  399 (433)
Q Consensus       340 ~~~~p~~~~~~~~~~~~~~g~~~~~~---------~~~-~~~~~~-------~~~~~~~~~~~---~~~~l~G~~~~g~~  399 (433)
                      |..+|...++-++....  |+++.++         ..+ +...|.       +...+|.|.+.   .+.||+|.|++||+
T Consensus       372 y~~V~TTVFTPLEy~c~--GlsEE~Ai~k~g~dnievfH~~f~P~E~~ipqrd~~~CY~K~vc~r~~~qkv~G~H~lgPn  449 (503)
T KOG4716|consen  372 YDDVATTVFTPLEYGCV--GLSEEDAIEKYGEDNIEVFHSYFKPLEYTIPQRDVRHCYLKAVCERDEDQKVLGLHILGPN  449 (503)
T ss_pred             ccCCceeeecchhcccc--CCCHHHHHHHhCcccEEEeeccccceEEEcccccCCceEEEEeecccCCceEEEEEEecCc
Confidence            99999877765655544  7665211         111 111111       23446667665   67899999999999


Q ss_pred             hHHH-HHHHHHHHcCCCCCChhhhc
Q 013952          400 PEEN-KAIAKVARVQPSVESLDVLK  423 (433)
Q Consensus       400 ~~~~-~~~~~~~~~~~~~~~~~~~~  423 (433)
                      |+|. +-++.|++-++|..||+...
T Consensus       450 AgEV~QGfaaAlk~glt~~~l~nti  474 (503)
T KOG4716|consen  450 AGEVIQGFAAALKCGLTKKDLDNTI  474 (503)
T ss_pred             hhHHHHHHHHHHHhcccHHHHhhcc
Confidence            9996 99999999999999877543

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.1e-36  Score=270.78  Aligned_cols=288  Identities=23%  Similarity=0.290  Sum_probs=219.8

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCccc-ccCCCCCCCCHhHHH
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHV-CVGSGGERLLPEWYK   82 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~   82 (433)
                      .|||+|||||||||+||.++++.+++.  ++|+++. ..        +.+.......++|+++. ..+..+.+...+...
T Consensus         3 ~~DviIIG~GPAGl~AAiya~r~~l~~--~li~~~~~~g--------g~~~~~~~venypg~~~~~~g~~L~~~~~~~a~   72 (305)
T COG0492           3 IYDVIIIGGGPAGLTAAIYAARAGLKV--VLILEGGEPG--------GQLTKTTDVENYPGFPGGILGPELMEQMKEQAE   72 (305)
T ss_pred             eeeEEEECCCHHHHHHHHHHHHcCCCc--EEEEecCCcC--------CccccceeecCCCCCccCCchHHHHHHHHHHHh
Confidence            699999999999999999999998763  4555555 22        11111224566677665 344444555666667


Q ss_pred             hCCcEEEeCceEEEEECCC--CEEEeCCCcEEecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhc
Q 013952           83 EKGIELILSTEIVRADIAS--KTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAK  160 (433)
Q Consensus        83 ~~~v~~~~~~~v~~i~~~~--~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~  160 (433)
                      ..++++.. ..|..++...  ..|.+.++. +++++||||||..++.|..++-+.....+++++..++.  .+       
T Consensus        73 ~~~~~~~~-~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~~~~~~e~e~~g~gv~yc~~cdg--~~-------  141 (305)
T COG0492          73 KFGVEIVE-DEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGARKLGVPGEEEFEGKGVSYCATCDG--FF-------  141 (305)
T ss_pred             hcCeEEEE-EEEEEEeecCceEEEEECCCe-EEEeEEEECcCCcccCCCCCcchhhcCCceEEeeecCc--cc-------
Confidence            78999988 5888888765  356666665 99999999999998887743222233467777776544  22       


Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhc-CcEEEcCCeEEEEEecCCCcEE
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVK  239 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~-GV~v~~~~~v~~i~~~~~g~~~  239 (433)
                      ++++++|||+|.+++|.|.+|.+.+.+|++++|.+.+.+   .    +.+.+.+++. +|++++++.+.++..  ++ +.
T Consensus       142 ~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra---~----~~~~~~l~~~~~i~~~~~~~i~ei~G--~~-v~  211 (305)
T COG0492         142 KGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRA---E----EILVERLKKNVKIEVLTNTVVKEILG--DD-VE  211 (305)
T ss_pred             cCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCc---C----HHHHHHHHhcCCeEEEeCCceeEEec--Cc-cc
Confidence            588999999999999999999999999999999987754   2    3344445544 899999999999987  43 56


Q ss_pred             EEEeCCC----cEEECCEEEEcccCccChhhhhccccc-CCCcEEeCCCCCCCCCCeEEcCccccccccccCcccccccH
Q 013952          240 EVKLKDG----RTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHV  314 (433)
Q Consensus       240 ~v~~~~g----~~i~~d~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~  314 (433)
                      +|.+.+.    +.+.+|-+++++|..|++.++.....+ ++|+|.+|+.++||+|+|||+||++..+.         +++
T Consensus       212 ~v~l~~~~~~~~~~~~~gvf~~iG~~p~~~~~~~~~~~~~~g~I~v~~~~~TsvpGifAaGDv~~~~~---------rqi  282 (305)
T COG0492         212 GVVLKNVKGEEKELPVDGVFIAIGHLPNTELLKGLGVLDENGYIVVDEEMETSVPGIFAAGDVADKNG---------RQI  282 (305)
T ss_pred             eEEEEecCCceEEEEeceEEEecCCCCchHHHhhccccCCCCcEEcCCCcccCCCCEEEeEeeccCcc---------cEE
Confidence            6777653    378999999999999999988665444 78999999999999999999999998764         356


Q ss_pred             HHHHHHHHHHHHHHhccC
Q 013952          315 DHARKSAEQAVKTIMATE  332 (433)
Q Consensus       315 ~~A~~~g~~aa~~i~~~~  332 (433)
                      ..|..+|..||.++....
T Consensus       283 ~ta~~~G~~Aa~~a~~~l  300 (305)
T COG0492         283 ATAAGDGAIAALSAERYL  300 (305)
T ss_pred             eehhhhHHHHHHHHHHHh
Confidence            667788888888776543

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=100.00  E-value=5.5e-36  Score=295.68  Aligned_cols=288  Identities=23%  Similarity=0.285  Sum_probs=214.8

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHh
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   83 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (433)
                      .|||+||||||||++||.+|++.|++   ++|+++. ...+.         ......+++++....+......+...+++
T Consensus       211 ~~dvvIIGgGpaGl~aA~~la~~G~~---v~li~~~~GG~~~---------~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  278 (517)
T PRK15317        211 PYDVLVVGGGPAGAAAAIYAARKGIR---TGIVAERFGGQVL---------DTMGIENFISVPETEGPKLAAALEEHVKE  278 (517)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCCeee---------ccCcccccCCCCCCCHHHHHHHHHHHHHH
Confidence            58999999999999999999999998   9999876 11110         01111222222222222233455667778


Q ss_pred             CCcEEEeCceEEEEECCC--CEEEeCCCcEEecceEEEccCCCccccCCCCCCCC---CCCCEEEecCHHHHHHHHHHHH
Q 013952           84 KGIELILSTEIVRADIAS--KTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGA---DAKNIFYLREIDDADKLVEAIK  158 (433)
Q Consensus        84 ~~v~~~~~~~v~~i~~~~--~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~~~~~~~~  158 (433)
                      ++++++.++.|..+++..  ..|.+.++.++.||++|+|||+.|+.++   +||.   ....++.....+...       
T Consensus       279 ~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r~~~---ipG~~~~~~~~v~~~~~~~~~~-------  348 (517)
T PRK15317        279 YDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARWRNMN---VPGEDEYRNKGVAYCPHCDGPL-------  348 (517)
T ss_pred             CCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCcCCCC---CCCHHHhcCceEEEeeccCchh-------
Confidence            899999988999998764  3566777888999999999999988776   4543   234454443222211       


Q ss_pred             hcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHh-cCcEEEcCCeEEEEEecCCCc
Q 013952          159 AKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGE  237 (433)
Q Consensus       159 ~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~-~GV~v~~~~~v~~i~~~~~g~  237 (433)
                       .++++++|||+|++|+|+|..|+..+.+|+++.+.+.+..   +    +.+.+.+.+ .||++++++.+.++.. ++++
T Consensus       349 -~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~---~----~~l~~~l~~~~gI~i~~~~~v~~i~~-~~g~  419 (517)
T PRK15317        349 -FKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKA---D----QVLQDKLRSLPNVTIITNAQTTEVTG-DGDK  419 (517)
T ss_pred             -cCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccc---c----HHHHHHHhcCCCcEEEECcEEEEEEc-CCCc
Confidence             1578999999999999999999999999999998876532   2    334555554 6999999999999987 3466


Q ss_pred             EEEEEeCC---C--cEEECCEEEEcccCccChhhhhccccc-CCCcEEeCCCCCCCCCCeEEcCccccccccccCccccc
Q 013952          238 VKEVKLKD---G--RTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRV  311 (433)
Q Consensus       238 ~~~v~~~~---g--~~i~~d~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~  311 (433)
                      +..+++.+   +  +++++|.+++++|++|++++++..+.. .+|+|.||+++||++|+|||+|||+..+.         
T Consensus       420 v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p~~~~l~~~v~~~~~g~i~vd~~l~Ts~p~IyAaGDv~~~~~---------  490 (517)
T PRK15317        420 VTGLTYKDRTTGEEHHLELEGVFVQIGLVPNTEWLKGTVELNRRGEIIVDARGATSVPGVFAAGDCTTVPY---------  490 (517)
T ss_pred             EEEEEEEECCCCcEEEEEcCEEEEeECCccCchHHhhheeeCCCCcEEECcCCCCCCCCEEECccccCCCC---------
Confidence            66666542   3  359999999999999999988655555 56889999999999999999999998754         


Q ss_pred             ccHHHHHHHHHHHHHHHhccC
Q 013952          312 EHVDHARKSAEQAVKTIMATE  332 (433)
Q Consensus       312 ~~~~~A~~~g~~aa~~i~~~~  332 (433)
                      +.+..|..+|..||.++...+
T Consensus       491 k~~~~A~~eG~~Aa~~~~~~l  511 (517)
T PRK15317        491 KQIIIAMGEGAKAALSAFDYL  511 (517)
T ss_pred             CEEEEhhhhHHHHHHHHHHHH
Confidence            346668889999998887643

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=100.00  E-value=1.1e-35  Score=295.13  Aligned_cols=291  Identities=23%  Similarity=0.294  Sum_probs=205.4

Q ss_pred             CCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHH
Q 013952            2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWY   81 (433)
Q Consensus         2 m~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (433)
                      |...|||+|||||||||+||.+|++.|++   |+|+|++.  +     .+.+.......++++.....+......+...+
T Consensus         1 m~~~yDVvIIGgGpAGL~AA~~lar~g~~---V~liE~~~--~-----GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~   70 (555)
T TIGR03143         1 MEEIYDLIIIGGGPAGLSAGIYAGRAKLD---TLIIEKDD--F-----GGQITITSEVVNYPGILNTTGPELMQEMRQQA   70 (555)
T ss_pred             CCCcCcEEEECCCHHHHHHHHHHHHCCCC---EEEEecCC--C-----CceEEeccccccCCCCcCCCHHHHHHHHHHHH
Confidence            44569999999999999999999999987   99999871  0     11111111111222221111111123344556


Q ss_pred             HhCCcEEEeCceEEEEECCCC--EEEeCCCcEEecceEEEccCCCccccCCCCCCCC---CCCCEEEecCHHHHHHHHHH
Q 013952           82 KEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRLTDFGVEGA---DAKNIFYLREIDDADKLVEA  156 (433)
Q Consensus        82 ~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~~~~~~  156 (433)
                      ++.+++++. ..|..++.+++  .+.+.++ .+.+++||+|||+.|+.|+   ++|.   ...+++++.......     
T Consensus        71 ~~~gv~~~~-~~V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p~~~~---ipG~~~~~~~~v~~~~~~~~~~-----  140 (555)
T TIGR03143        71 QDFGVKFLQ-AEVLDVDFDGDIKTIKTARG-DYKTLAVLIATGASPRKLG---FPGEEEFTGRGVAYCATCDGEF-----  140 (555)
T ss_pred             HHcCCEEec-cEEEEEEecCCEEEEEecCC-EEEEeEEEECCCCccCCCC---CCCHHHhCCceEEEEeecChhh-----
Confidence            678999865 58888887654  3555444 6899999999999998877   4553   234555543332211     


Q ss_pred             HHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCC
Q 013952          157 IKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG  236 (433)
Q Consensus       157 ~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g  236 (433)
                         ..+++++|||+|++|+|+|..|.+.|.+|+++.+.+.+..   .....   .+.+++.||++++++.|.++..  ++
T Consensus       141 ---~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~~---~~~~~---~~~~~~~gV~i~~~~~V~~i~~--~~  209 (555)
T TIGR03143       141 ---FTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFTC---AKLIA---EKVKNHPKIEVKFNTELKEATG--DD  209 (555)
T ss_pred             ---cCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcccc---CHHHH---HHHHhCCCcEEEeCCEEEEEEc--CC
Confidence               1589999999999999999999999999999999876532   33332   2334567999999999999975  44


Q ss_pred             cEEEEEe---CCCcE----EECCE----EEEcccCccChhhhhccccc-CCCcEEeCCCCCCCCCCeEEcCccccccccc
Q 013952          237 EVKEVKL---KDGRT----LEADI----VVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKL  304 (433)
Q Consensus       237 ~~~~v~~---~~g~~----i~~d~----vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~  304 (433)
                      .+..+.+   .+|+.    +++|.    |++++|++|++.+++..+.+ .+|+|.||+++||+.|+|||+|||+....  
T Consensus       210 ~v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~~~~l~l~~~G~I~vd~~~~Ts~p~IyAaGDv~~~~~--  287 (555)
T TIGR03143       210 GLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSELFKGVVELDKRGYIPTNEDMETNVPGVYAAGDLRPKEL--  287 (555)
T ss_pred             cEEEEEEEECCCCCEEEEeccccccceEEEEEeCCCCChhHHhhhcccCCCCeEEeCCccccCCCCEEEceeccCCCc--
Confidence            4433332   34643    23676    99999999999998776666 46889999999999999999999975321  


Q ss_pred             cCcccccccHHHHHHHHHHHHHHHhccC
Q 013952          305 YREMRRVEHVDHARKSAEQAVKTIMATE  332 (433)
Q Consensus       305 ~~~~~~~~~~~~A~~~g~~aa~~i~~~~  332 (433)
                             +.+..|..+|+.||.+|...+
T Consensus       288 -------~~v~~A~~~G~~Aa~~i~~~l  308 (555)
T TIGR03143       288 -------RQVVTAVADGAIAATSAERYV  308 (555)
T ss_pred             -------chheeHHhhHHHHHHHHHHHH
Confidence                   356679999999999986443

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=100.00  E-value=5.1e-36  Score=266.70  Aligned_cols=407  Identities=23%  Similarity=0.357  Sum_probs=308.5

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCc--ccccCCC--CCCCCHh
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGF--HVCVGSG--GERLLPE   79 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~   79 (433)
                      +.-.+|||+|.+..++++..+... ..+.|.+|..+ ..||.||.+++.+|+...+...-.+  ....|..  ++.....
T Consensus       178 hvp~liigggtaAfaa~rai~s~d-a~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffepd~  256 (659)
T KOG1346|consen  178 HVPYLIIGGGTAAFAAFRAIKSND-ATAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFEPDG  256 (659)
T ss_pred             cCceeEEcCCchhhhcccccccCC-CCceEEeeccCccCcccCCCcchhceecCCCChhhheeecccCCccceeEecCCc
Confidence            456899999998776666555443 35679999999 9999999999999877655332211  1112211  0111111


Q ss_pred             H---------HHhCCcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCC-CCCCCCCCEEEecCHHH
Q 013952           80 W---------YKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFG-VEGADAKNIFYLREIDD  149 (433)
Q Consensus        80 ~---------~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~-~~g~~~~~v~~~~~~~~  149 (433)
                      +         ...-||-+..+..|..|+.+++.|.+.||.++.||.++||||.+|...+.+. .+......+..++...|
T Consensus       257 FfvspeDLp~~~nGGvAvl~G~kvvkid~~d~~V~LnDG~~I~YdkcLIATG~~Pk~l~~~~~A~~evk~kit~fr~p~D  336 (659)
T KOG1346|consen  257 FFVSPEDLPKAVNGGVAVLRGRKVVKIDEEDKKVILNDGTTIGYDKCLIATGVRPKKLQVFEEASEEVKQKITYFRYPAD  336 (659)
T ss_pred             ceeChhHCcccccCceEEEeccceEEeecccCeEEecCCcEeehhheeeecCcCcccchhhhhcCHHhhhheeEEecchH
Confidence            1         1235789999999999999999999999999999999999999998776522 11112456788889999


Q ss_pred             HHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhC----CCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCC
Q 013952          150 ADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKIN----NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGT  225 (433)
Q Consensus       150 ~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~----g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~  225 (433)
                      ..++.+.+.+  .+++.|||+|.+|-|+|..|.+.    |.+|+-+......+...+++.++++-.+.+++.||.++.+.
T Consensus       337 F~rlek~~ae--k~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna  414 (659)
T KOG1346|consen  337 FKRLEKGLAE--KQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNA  414 (659)
T ss_pred             HHHHHHhhhh--cceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhhhhHHHHHHHHHHHHHhcCceeccch
Confidence            9999888875  48999999999999999998764    67888777776667777889999999999999999999999


Q ss_pred             eEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhhhc-cccc--CCCcEEeCCCCCCCCCCeEEcCccccccc
Q 013952          226 VAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAE--NKGGIETDDFFKTSADDVYAVGDVATFPM  302 (433)
Q Consensus       226 ~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~-~~~~--~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~  302 (433)
                      .|.++..+..+  ..+++.||.++..|+|++|+|-.||.+++.. +++.  .-|++.||..|+. ..|||++||++...+
T Consensus       415 ~v~sv~~~~~n--l~lkL~dG~~l~tD~vVvavG~ePN~ela~~sgLeiD~~lGGfrvnaeL~a-r~NvwvAGdaacF~D  491 (659)
T KOG1346|consen  415 KVESVRKCCKN--LVLKLSDGSELRTDLVVVAVGEEPNSELAEASGLEIDEKLGGFRVNAELKA-RENVWVAGDAACFED  491 (659)
T ss_pred             hhhhhhhhccc--eEEEecCCCeeeeeeEEEEecCCCchhhcccccceeecccCcEEeeheeec-ccceeeecchhhhhc
Confidence            99998773333  5688999999999999999999999999954 5665  4589999999998 689999999999998


Q ss_pred             cccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEee-cccceEEecCCCCc----EE-----------
Q 013952          303 KLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRA-FDLSWQFYGDNVGD----TV-----------  366 (433)
Q Consensus       303 ~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~g~~~~~----~~-----------  366 (433)
                      ...|.++ .+++.+|.-.||.|++||.+..     .+|....+||+.. |++.+..+|+-..-    .+           
T Consensus       492 ~~LGrRR-VehhdhavvSGRLAGENMtgAa-----kpy~hqsmFWsdlgP~igyeaIGlvDSSLpTVgVfA~p~s~~~~~  565 (659)
T KOG1346|consen  492 GVLGRRR-VEHHDHAVVSGRLAGENMTGAA-----KPYKHQSMFWSDLGPEIGYEAIGLVDSSLPTVGVFALPSSATRVD  565 (659)
T ss_pred             cccccee-ccccccceeeceeccccccccc-----CCccccceeeeccCcccccceeeecccCCCcceeeeccccccchh
Confidence            8777654 4899999999999999999865     6777788899764 55655555543210    00           


Q ss_pred             ---EEcCC-----------------Ccc--------ccCCcEE---EEEEeCCEEEEEEEecCChHHHHHHHHHHHcCCC
Q 013952          367 ---LFGDN-----------------DLA--------SATHKFG---TYWIKDGKVVGVFLESGTPEENKAIAKVARVQPS  415 (433)
Q Consensus       367 ---~~~~~-----------------~~~--------~~~~~~~---~~~~~~~~l~G~~~~g~~~~~~~~~~~~~~~~~~  415 (433)
                         ...+.                 .+.        .+...|+   .||++|+.|+|+.+|. -=.++..+..+|.++..
T Consensus       566 ~~se~sdt~v~~~s~s~s~ss~~~~~~s~~~v~~~P~e~~~ygKgViFYl~d~~iVGilLwN-~Fnr~~~AR~II~d~kk  644 (659)
T KOG1346|consen  566 QLSESSDTDVPETSTSSSQSSKSDAGASQDGVTCDPDEAGNYGKGVIFYLKDDKIVGILLWN-LFNRIGLARTIINDNKK  644 (659)
T ss_pred             hhhhccCCCCccccccccccccccCCcCCCCCccCcccccccCceEEEEecCCcEEEEEehh-hhccchhhHHHhccccc
Confidence               00011                 000        1123343   4677999999999996 33488999999999999


Q ss_pred             CCChhhhcc
Q 013952          416 VESLDVLKN  424 (433)
Q Consensus       416 ~~~~~~~~~  424 (433)
                      .+|+.+++-
T Consensus       645 ~ddlnEvAK  653 (659)
T KOG1346|consen  645 YDDLNEVAK  653 (659)
T ss_pred             hhhHHHHHh
Confidence            988876553

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=100.00  E-value=2.1e-35  Score=286.31  Aligned_cols=286  Identities=20%  Similarity=0.241  Sum_probs=206.0

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHh
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   83 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (433)
                      ..++|+|||||+||+++|..|++.|++   |+|+|+...+.       +.+..    .++.+..  .........+.+++
T Consensus       132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~---V~vie~~~~~G-------G~l~~----gip~~~~--~~~~~~~~~~~l~~  195 (449)
T TIGR01316       132 THKKVAVIGAGPAGLACASELAKAGHS---VTVFEALHKPG-------GVVTY----GIPEFRL--PKEIVVTEIKTLKK  195 (449)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCc---EEEEecCCCCC-------cEeee----cCCCccC--CHHHHHHHHHHHHh
Confidence            357999999999999999999999987   99999972111       11110    0111110  00111223455677


Q ss_pred             CCcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCC-CccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHH----
Q 013952           84 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGS-TVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIK----  158 (433)
Q Consensus        84 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~-~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~----  158 (433)
                      .+++++.+..+      ++.+.+.+. ...||+||+|||+ .|+.++   +||.+..++++..++.....+.....    
T Consensus       196 ~gv~~~~~~~v------~~~v~~~~~-~~~yd~viiAtGa~~p~~~~---ipG~~~~gv~~~~~~l~~~~~~~~~~~~~~  265 (449)
T TIGR01316       196 LGVTFRMNFLV------GKTATLEEL-FSQYDAVFIGTGAGLPKLMN---IPGEELCGVYSANDFLTRANLMKAYEFPHA  265 (449)
T ss_pred             CCcEEEeCCcc------CCcCCHHHH-HhhCCEEEEeCCCCCCCcCC---CCCCCCCCcEEHHHHHHHHhhccccccccc
Confidence            89999988643      234444333 3579999999998 677666   67877778887665543322221110    


Q ss_pred             ---hcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCC
Q 013952          159 ---AKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD  235 (433)
Q Consensus       159 ---~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~  235 (433)
                         ...+++++|||+|++|+|+|..+.+.|.+|+++.+.+..... ..    ....+.+++.||++++++.+.++..+++
T Consensus       266 ~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~-~~----~~~~~~l~~~GV~~~~~~~~~~i~~~~~  340 (449)
T TIGR01316       266 DTPVYAGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMT-AR----VEEIAHAEEEGVKFHFLCQPVEIIGDEE  340 (449)
T ss_pred             CCcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCC-CC----HHHHHHHHhCCCEEEeccCcEEEEEcCC
Confidence               124689999999999999999999999999999987642111 11    2233567889999999999999976455


Q ss_pred             CcEEEEEeC---------CC-----------cEEECCEEEEcccCccChhhhhc-cccc-CCCcEEeCCCCCCCCCCeEE
Q 013952          236 GEVKEVKLK---------DG-----------RTLEADIVVVGVGGRPLISLFKG-QVAE-NKGGIETDDFFKTSADDVYA  293 (433)
Q Consensus       236 g~~~~v~~~---------~g-----------~~i~~d~vi~a~G~~p~~~~~~~-~~~~-~~g~i~vd~~~~t~~~~vfa  293 (433)
                      |++..|++.         +|           .++++|.||+|+|+.|+..+++. ++.. .+|+|.||++++|+.|+|||
T Consensus       341 g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~l~~~gl~~~~~G~i~vd~~~~Ts~~~VfA  420 (449)
T TIGR01316       341 GNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIMAETTRLKTSERGTIVVDEDQRTSIPGVFA  420 (449)
T ss_pred             CeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCchhhhccCcccCCCCeEEeCCCCccCCCCEEE
Confidence            666666543         22           26999999999999999987753 5666 46889999999999999999


Q ss_pred             cCccccccccccCcccccccHHHHHHHHHHHHHHHhc
Q 013952          294 VGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMA  330 (433)
Q Consensus       294 ~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~  330 (433)
                      +|||+..+          .++..|+.+|+.||.+|..
T Consensus       421 ~GD~~~g~----------~~v~~Ai~~G~~AA~~I~~  447 (449)
T TIGR01316       421 GGDIILGA----------ATVIRAMGQGKRAAKSINE  447 (449)
T ss_pred             ecCCCCCc----------HHHHHHHHHHHHHHHHHHh
Confidence            99998754          4678899999999999865

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK12831 putative oxidoreductase; Provisional

Probab=100.00  E-value=3.8e-35  Score=284.74  Aligned_cols=289  Identities=22%  Similarity=0.244  Sum_probs=207.1

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      .+||+||||||||++||.+|++.|++   |+|+|+...+       ++++.    ..+|.+... .........+++++.
T Consensus       140 ~~~V~IIG~GpAGl~aA~~l~~~G~~---V~v~e~~~~~-------GG~l~----~gip~~~l~-~~~~~~~~~~~~~~~  204 (464)
T PRK12831        140 GKKVAVIGSGPAGLTCAGDLAKMGYD---VTIFEALHEP-------GGVLV----YGIPEFRLP-KETVVKKEIENIKKL  204 (464)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCe---EEEEecCCCC-------CCeee----ecCCCccCC-ccHHHHHHHHHHHHc
Confidence            57999999999999999999999987   9999987111       11111    111211110 000122334667788


Q ss_pred             CcEEEeCceEEEEECCCCEEEeCCC-cEEecceEEEccCC-CccccCCCCCCCCCCCCEEEecCHHHHHHHHHHH-----
Q 013952           85 GIELILSTEIVRADIASKTLLSATG-LIFKYQILVIATGS-TVLRLTDFGVEGADAKNIFYLREIDDADKLVEAI-----  157 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~~v~~~~~-~~~~~d~lvlAtG~-~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~-----  157 (433)
                      |++++.++.+      .+.+.+.+. ..+.||+|+||||+ .|+.++   +||.+..++++..++.....+....     
T Consensus       205 gv~i~~~~~v------~~~v~~~~~~~~~~~d~viiAtGa~~~~~l~---ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~  275 (464)
T PRK12831        205 GVKIETNVVV------GKTVTIDELLEEEGFDAVFIGSGAGLPKFMG---IPGENLNGVFSANEFLTRVNLMKAYKPEYD  275 (464)
T ss_pred             CCEEEcCCEE------CCcCCHHHHHhccCCCEEEEeCCCCCCCCCC---CCCcCCcCcEEHHHHHHHHHhccccccccc
Confidence            9999998654      223333332 24679999999998 577766   6888778888776654433221110     


Q ss_pred             -HhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc-cCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCC
Q 013952          158 -KAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW-CMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD  235 (433)
Q Consensus       158 -~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~-~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~  235 (433)
                       ....+++|+|||+|++|+|+|..+.+.|.+|+++.+.+. .++    ... ..+ +.+++.||++++++.+.++..+++
T Consensus       276 ~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~----a~~-~e~-~~a~~eGV~i~~~~~~~~i~~~~~  349 (464)
T PRK12831        276 TPIKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELP----ARV-EEV-HHAKEEGVIFDLLTNPVEILGDEN  349 (464)
T ss_pred             CcccCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCC----CCH-HHH-HHHHHcCCEEEecccceEEEecCC
Confidence             012579999999999999999999999999999988653 222    111 111 335778999999999999986556


Q ss_pred             CcEEEEEeC------------------CC--cEEECCEEEEcccCccChhhhhc--cccc-CCCcEEeCCC-CCCCCCCe
Q 013952          236 GEVKEVKLK------------------DG--RTLEADIVVVGVGGRPLISLFKG--QVAE-NKGGIETDDF-FKTSADDV  291 (433)
Q Consensus       236 g~~~~v~~~------------------~g--~~i~~d~vi~a~G~~p~~~~~~~--~~~~-~~g~i~vd~~-~~t~~~~v  291 (433)
                      |++..+++.                  +|  .++++|.||+|+|+.|+..++..  ++.. .+|+|.||++ ++|+.|+|
T Consensus       350 g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~Ts~pgV  429 (464)
T PRK12831        350 GWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPLISSTTKGLKINKRGCIVADEETGLTSKEGV  429 (464)
T ss_pred             CeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCCChhhhcccCCceECCCCcEEECCCCCccCCCCE
Confidence            766655542                  22  26999999999999999987753  5655 5688999998 99999999


Q ss_pred             EEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCC
Q 013952          292 YAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEG  333 (433)
Q Consensus       292 fa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~  333 (433)
                      ||+|||+..+          .++..|+.+|+.||.+|...+.
T Consensus       430 fAaGD~~~g~----------~~v~~Ai~~G~~AA~~I~~~L~  461 (464)
T PRK12831        430 FAGGDAVTGA----------ATVILAMGAGKKAAKAIDEYLS  461 (464)
T ss_pred             EEeCCCCCCc----------hHHHHHHHHHHHHHHHHHHHhc
Confidence            9999998765          4578899999999999987653

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=100.00  E-value=2.4e-33  Score=288.38  Aligned_cols=288  Identities=22%  Similarity=0.253  Sum_probs=207.4

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      .+||+||||||||++||.+|++.|++   |+|+|+...+       ++++.    ..+|.+...  ........+++++.
T Consensus       431 ~~~V~IIGaGpAGl~aA~~l~~~G~~---V~v~e~~~~~-------GG~l~----~gip~~rlp--~~~~~~~~~~l~~~  494 (752)
T PRK12778        431 GKKVAVIGSGPAGLSFAGDLAKRGYD---VTVFEALHEI-------GGVLK----YGIPEFRLP--KKIVDVEIENLKKL  494 (752)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCe---EEEEecCCCC-------CCeee----ecCCCCCCC--HHHHHHHHHHHHHC
Confidence            57999999999999999999999987   9999987111       11111    112221110  01112334567788


Q ss_pred             CcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCC-CccccCCCCCCCCCCCCEEEecCHHHHHHHHHHH------
Q 013952           85 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGS-TVLRLTDFGVEGADAKNIFYLREIDDADKLVEAI------  157 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~-~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~------  157 (433)
                      |+++..++.+      ++.+.+++.....||+||||||+ .|+.++   +||.+.+++++..++.....+....      
T Consensus       495 gv~~~~~~~v------~~~v~~~~l~~~~ydavvlAtGa~~~~~l~---ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~  565 (752)
T PRK12778        495 GVKFETDVIV------GKTITIEELEEEGFKGIFIASGAGLPNFMN---IPGENSNGVMSSNEYLTRVNLMDAASPDSDT  565 (752)
T ss_pred             CCEEECCCEE------CCcCCHHHHhhcCCCEEEEeCCCCCCCCCC---CCCCCCCCcEEHHHHHHHHhhcccccccccC
Confidence            9999988543      33444544445779999999998 477666   6888778888766554432221110      


Q ss_pred             HhcCCCcEEEECCCHHHHHHHHHHHhCCCe-EEEEccCCc-cCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCC
Q 013952          158 KAKKNGKAVVVGGGYIGLELSAALKINNID-VSMVYPEPW-CMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD  235 (433)
Q Consensus       158 ~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~-V~li~~~~~-~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~  235 (433)
                      ....+++|+|||+|++|+|+|..+.+.|.+ |+++.+.+. .++. ...+     .+.+++.||++++++.+.++..+++
T Consensus       566 ~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~-~~~e-----~~~~~~~GV~i~~~~~~~~i~~~~~  639 (752)
T PRK12778        566 PIKFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPA-RLEE-----VKHAKEEGIEFLTLHNPIEYLADEK  639 (752)
T ss_pred             cccCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCC-CHHH-----HHHHHHcCCEEEecCcceEEEECCC
Confidence            012468999999999999999999999987 999988754 2222 1111     1346788999999999999976556


Q ss_pred             CcEEEEEeC---------CC-----------cEEECCEEEEcccCccChhhhhc--cccc-CCCcEEeCCCCCCCCCCeE
Q 013952          236 GEVKEVKLK---------DG-----------RTLEADIVVVGVGGRPLISLFKG--QVAE-NKGGIETDDFFKTSADDVY  292 (433)
Q Consensus       236 g~~~~v~~~---------~g-----------~~i~~d~vi~a~G~~p~~~~~~~--~~~~-~~g~i~vd~~~~t~~~~vf  292 (433)
                      +++..+++.         +|           .++++|.||+|+|++|+..++..  ++.. .+|+|.||++++|+.|+||
T Consensus       640 g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~gVf  719 (752)
T PRK12778        640 GWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLVPSSIPGLELNRKGTIVVDEEMQSSIPGIY  719 (752)
T ss_pred             CEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCccccccccCceECCCCCEEeCCCCCCCCCCEE
Confidence            766666542         12           35999999999999999876543  4555 5688999999999999999


Q ss_pred             EcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCC
Q 013952          293 AVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEG  333 (433)
Q Consensus       293 a~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~  333 (433)
                      |+|||+..+          .++..|+.+|+.||.+|...+.
T Consensus       720 A~GD~~~g~----------~~vv~Av~~G~~AA~~I~~~L~  750 (752)
T PRK12778        720 AGGDIVRGG----------ATVILAMGDGKRAAAAIDEYLS  750 (752)
T ss_pred             EeCCccCCc----------HHHHHHHHHHHHHHHHHHHHhc
Confidence            999999764          4578899999999999986543

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=100.00  E-value=8.1e-33  Score=281.20  Aligned_cols=281  Identities=24%  Similarity=0.322  Sum_probs=194.5

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      .++|+||||||||++||.+|++.|++   |+|+|+...+.       +.+.    ..+|++..  .........+++.+.
T Consensus       539 gKkVaIIGgGPAGLsAA~~Lar~G~~---VtV~Ek~~~~G-------G~lr----~~IP~~Rl--p~evL~~die~l~~~  602 (1019)
T PRK09853        539 RKKVAVIGAGPAGLAAAYFLARAGHP---VTVFEREENAG-------GVVK----NIIPQFRI--PAELIQHDIEFVKAH  602 (1019)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCe---EEEEecccccC-------ccee----eecccccc--cHHHHHHHHHHHHHc
Confidence            47999999999999999999999987   99999882221       1111    11222211  001112234667778


Q ss_pred             CcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCcc-ccCCCCCCCCCCCCEEEecC-HHHHHHHHHHHHhcCC
Q 013952           85 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVL-RLTDFGVEGADAKNIFYLRE-IDDADKLVEAIKAKKN  162 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~-~~~~~~~~g~~~~~v~~~~~-~~~~~~~~~~~~~~~~  162 (433)
                      |++++.++.+ .++       +.+.....||+||||||+.+. .++   ++|.+ .++++..+ +.+.......+  ..+
T Consensus       603 GVe~~~gt~V-di~-------le~L~~~gYDaVILATGA~~~~~l~---IpG~~-~gV~saldfL~~~k~~~~~~--~~G  668 (1019)
T PRK09853        603 GVKFEFGCSP-DLT-------VEQLKNEGYDYVVVAIGADKNGGLK---LEGGN-QNVIKALPFLEEYKNKGTAL--KLG  668 (1019)
T ss_pred             CCEEEeCcee-EEE-------hhhheeccCCEEEECcCCCCCCCCC---CCCcc-CCceehHHHHHHHhhhcccc--cCC
Confidence            9999998765 222       223345679999999999753 333   56654 45553222 11111111111  147


Q ss_pred             CcEEEECCCHHHHHHHHHHHhC-C-CeEEEEccCCc-cCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcE-
Q 013952          163 GKAVVVGGGYIGLELSAALKIN-N-IDVSMVYPEPW-CMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEV-  238 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~-g-~~V~li~~~~~-~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~-  238 (433)
                      ++|+|||+|.+|+|+|..+.+. | .+|+++.+.+. .++. .+.+    +.+.+ +.||++++++.+.++..  ++++ 
T Consensus       669 KrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~MPA-~~eE----le~Al-eeGVe~~~~~~p~~I~~--dG~l~  740 (1019)
T PRK09853        669 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPA-WREE----YEEAL-EDGVEFKELLNPESFDA--DGTLT  740 (1019)
T ss_pred             CEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCcccccc-cHHH----HHHHH-HcCCEEEeCCceEEEEc--CCcEE
Confidence            9999999999999999998887 4 48999988763 3332 2333    33333 47999999998888863  3322 


Q ss_pred             ---------------EEEEeCCCcEEECCEEEEcccCccChhhhhc-cccc-CCCcEEeCCCCCCCCCCeEEcCcccccc
Q 013952          239 ---------------KEVKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAE-NKGGIETDDFFKTSADDVYAVGDVATFP  301 (433)
Q Consensus       239 ---------------~~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~-~~~~-~~g~i~vd~~~~t~~~~vfa~Gd~~~~~  301 (433)
                                     ..+...++.++++|.||+|+|.+|+.+++.. ++.. .+|++.||++++|+.|+|||+|||+..+
T Consensus       741 ~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pntelle~~GL~ld~~G~I~VDetlqTs~pgVFAaGD~a~Gp  820 (1019)
T PRK09853        741 CRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTELLKANGIPLDKKGWPVVDANGETSLTNVYMIGDVQRGP  820 (1019)
T ss_pred             EEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCChhHHHhcCccccCCCCEEeCCCcccCCCCEEEEeccccCc
Confidence                           2223334468999999999999999998753 5655 5688999999999999999999998765


Q ss_pred             ccccCcccccccHHHHHHHHHHHHHHHhccCC
Q 013952          302 MKLYREMRRVEHVDHARKSAEQAVKTIMATEG  333 (433)
Q Consensus       302 ~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~  333 (433)
                                .++..|+.+|+.||.+|.+...
T Consensus       821 ----------~tvv~Ai~qGr~AA~nI~~~~~  842 (1019)
T PRK09853        821 ----------STIVAAIADARRAADAILSREG  842 (1019)
T ss_pred             ----------hHHHHHHHHHHHHHHHHhhhcC
Confidence                      4678899999999999987653

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=100.00  E-value=4e-31  Score=256.73  Aligned_cols=386  Identities=25%  Similarity=0.258  Sum_probs=292.3

Q ss_pred             EEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhCCc
Q 013952            8 YVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKGI   86 (433)
Q Consensus         8 vvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   86 (433)
                      ++|||+|++|+++|..+++... ..+++++..+ ...|.++.++.............          ..... +..+.++
T Consensus         1 ivivG~g~aG~~aa~~l~~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~-~~~~~~i   68 (415)
T COG0446           1 IVIVGGGAAGLSAATTLRRLLL-AAEITLIGREPKYSYYRCPLSLYVGGGIASLEDL----------RYPPR-FNRATGI   68 (415)
T ss_pred             CEEECCcHHHHHHHHHHHhcCC-CCCEEEEeCCCCCCCCCCccchHHhcccCCHHHh----------cccch-hHHhhCC
Confidence            5899999999999999888753 5678888888 67777766655443322111110          01111 2256789


Q ss_pred             EEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEE
Q 013952           87 ELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAV  166 (433)
Q Consensus        87 ~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~  166 (433)
                      ++..++.+..++++.+.+.+.++ ++.||+|++|||++|..++     +.....+++.+...++..+......  .++++
T Consensus        69 ~~~~~~~v~~id~~~~~v~~~~g-~~~yd~LvlatGa~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~  140 (415)
T COG0446          69 DVRTGTEVTSIDPENKVVLLDDG-EIEYDYLVLATGARPRPPP-----ISDWEGVVTLRLREDAEALKGGAEP--PKDVV  140 (415)
T ss_pred             EEeeCCEEEEecCCCCEEEECCC-cccccEEEEcCCCcccCCC-----ccccCceEEECCHHHHHHHHHHHhc--cCeEE
Confidence            99999999999999999999998 8999999999999998765     3445678999999999888777653  58999


Q ss_pred             EECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEE--EEeC
Q 013952          167 VVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE--VKLK  244 (433)
Q Consensus       167 ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~--v~~~  244 (433)
                      |+|+|++|+|+|..+.+.|++|++++..+++++..+.+++.+.+.+.+++.||+++++..+.+++... +....  +...
T Consensus       141 vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~-~~~~~~~~~~~  219 (415)
T COG0446         141 VVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKG-NTLVVERVVGI  219 (415)
T ss_pred             EECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEEccc-CcceeeEEEEe
Confidence            99999999999999999999999999999998863228999999999999999999999999998732 22222  5777


Q ss_pred             CCcEEECCEEEEcccCccChhhhhccc--cc-CCCcEEeCCCCCCC-CCCeEEcCccccccccccCcccccccHHHHHHH
Q 013952          245 DGRTLEADIVVVGVGGRPLISLFKGQV--AE-NKGGIETDDFFKTS-ADDVYAVGDVATFPMKLYREMRRVEHVDHARKS  320 (433)
Q Consensus       245 ~g~~i~~d~vi~a~G~~p~~~~~~~~~--~~-~~g~i~vd~~~~t~-~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~  320 (433)
                      ++..+++|.+++++|.+||..+.+...  .. ..|++.||++++|+ .++||++|||+..+....+.....+++..+..+
T Consensus       220 ~~~~~~~d~~~~~~g~~p~~~l~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~GD~~~~~~~~~~~~~~~~~~~~a~~~  299 (415)
T COG0446         220 DGEEIKADLVIIGPGERPNVVLANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAA  299 (415)
T ss_pred             CCcEEEeeEEEEeecccccHHHHhhCccceeccCCCEEEccccccCCCCCEEeccceEeeecccCCceeeeechhhHhhh
Confidence            888999999999999999988887654  33 67789999999997 999999999999887654444556889999999


Q ss_pred             HHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCCC-c-------EEEEcCCCcc--ccCCc--EEEEEE--e
Q 013952          321 AEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG-D-------TVLFGDNDLA--SATHK--FGTYWI--K  386 (433)
Q Consensus       321 g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~-~-------~~~~~~~~~~--~~~~~--~~~~~~--~  386 (433)
                      ++.++.++.+. .    ......++.++..++......|.+.. +       ....+.....  .+...  ..+...  .
T Consensus       300 ~~i~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (415)
T COG0446         300 GRIAAENIAGA-L----RIPGLLGTVISDVGDLCAASTGLTEGKERGIDVVLVVSGGKDPRAHLYPGAELVGIKLVGDAD  374 (415)
T ss_pred             hHHHHHHhccc-c----ccccccCceEEEEcCeEEEEecCCcccccceeeeEEEeccCcccccccCCCCeEEEEEEEcCc
Confidence            99999999865 1    33455677888888888887787764 1       1111111111  01111  122222  6


Q ss_pred             CCEEEEEEEecCChHHHHHHHHHHHcCCCCCChh
Q 013952          387 DGKVVGVFLESGTPEENKAIAKVARVQPSVESLD  420 (433)
Q Consensus       387 ~~~l~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~  420 (433)
                      +++++|++. -.....+..+..+++.+.++.++.
T Consensus       375 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  407 (415)
T COG0446         375 TGRILGGQE-LEVLKRIGALALAIGLGDTVAELD  407 (415)
T ss_pred             ccceehhhh-HHHHhhhhhhhhhhhhcCchhhhh
Confidence            788888888 222334688888888888887443

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=100.00  E-value=2.4e-32  Score=266.49  Aligned_cols=287  Identities=22%  Similarity=0.249  Sum_probs=199.8

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      .++|+|||||++|+++|..|++.|++   |+|+|+....      . +++..    .+|.+..  .........+++++.
T Consensus       140 ~~~VvIIGgGpaGl~aA~~l~~~g~~---V~lie~~~~~------g-G~l~~----gip~~~~--~~~~~~~~~~~l~~~  203 (457)
T PRK11749        140 GKKVAVIGAGPAGLTAAHRLARKGYD---VTIFEARDKA------G-GLLRY----GIPEFRL--PKDIVDREVERLLKL  203 (457)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCe---EEEEccCCCC------C-cEeec----cCCCccC--CHHHHHHHHHHHHHc
Confidence            47999999999999999999999987   9999988211      1 11100    1111110  001122345667788


Q ss_pred             CcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCC-ccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHh-cCC
Q 013952           85 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST-VLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKA-KKN  162 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~-~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~-~~~  162 (433)
                      +++++.++.+.      +.+.+.+. .+.||+||+|||+. +..++   ++|.+..++++..++............ ..+
T Consensus       204 gv~~~~~~~v~------~~v~~~~~-~~~~d~vvlAtGa~~~~~~~---i~G~~~~gv~~~~~~l~~~~~~~~~~~~~~g  273 (457)
T PRK11749        204 GVEIRTNTEVG------RDITLDEL-RAGYDAVFIGTGAGLPRFLG---IPGENLGGVYSAVDFLTRVNQAVADYDLPVG  273 (457)
T ss_pred             CCEEEeCCEEC------CccCHHHH-HhhCCEEEEccCCCCCCCCC---CCCccCCCcEEHHHHHHHHhhccccccCCCC
Confidence            99999886541      22333333 37899999999985 55444   677666677764433222111000011 157


Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCC-eEEEEccCCc-cCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEE
Q 013952          163 GKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPW-CMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE  240 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~-~V~li~~~~~-~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~  240 (433)
                      ++++|||+|.+|+|+|..+.+.|. +|+++.+.+. .++.  ...    ..+.+++.||++++++.+.++..+ ++.+.+
T Consensus       274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~--~~~----~~~~~~~~GV~i~~~~~v~~i~~~-~~~~~~  346 (457)
T PRK11749        274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPA--SEE----EVEHAKEEGVEFEWLAAPVEILGD-EGRVTG  346 (457)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCC--CHH----HHHHHHHCCCEEEecCCcEEEEec-CCceEE
Confidence            899999999999999999999997 8999988654 2332  222    345678899999999999999863 333233


Q ss_pred             EEe-------------------CCCcEEECCEEEEcccCccChhhhhc--cccc-CCCcEEeCC-CCCCCCCCeEEcCcc
Q 013952          241 VKL-------------------KDGRTLEADIVVVGVGGRPLISLFKG--QVAE-NKGGIETDD-FFKTSADDVYAVGDV  297 (433)
Q Consensus       241 v~~-------------------~~g~~i~~d~vi~a~G~~p~~~~~~~--~~~~-~~g~i~vd~-~~~t~~~~vfa~Gd~  297 (433)
                      |.+                   .+++++++|.||+|+|++|+..++..  ++.. .+|+|.||+ +++|+.|+|||+|||
T Consensus       347 v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~~l~~~~~gl~~~~~g~i~vd~~~~~Ts~~~VfA~GD~  426 (457)
T PRK11749        347 VEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLILSTTPGLELNRWGTIIADDETGRTSLPGVFAGGDI  426 (457)
T ss_pred             EEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCchhhccccCccCCCCCCEEeCCCCCccCCCCEEEeCCc
Confidence            332                   12347999999999999999877642  4555 568899998 899999999999999


Q ss_pred             ccccccccCcccccccHHHHHHHHHHHHHHHhccCCC
Q 013952          298 ATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGG  334 (433)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~  334 (433)
                      +..+          .++..|+.+|+.||.+|...+.+
T Consensus       427 ~~~~----------~~~~~A~~~G~~aA~~I~~~l~g  453 (457)
T PRK11749        427 VTGA----------ATVVWAVGDGKDAAEAIHEYLEG  453 (457)
T ss_pred             CCCc----------hHHHHHHHHHHHHHHHHHHHHhc
Confidence            9543          46788999999999999876644

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=100.00  E-value=2.6e-32  Score=282.15  Aligned_cols=288  Identities=19%  Similarity=0.195  Sum_probs=206.9

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      .++|+|||||||||+||.+|++.|++   |+|+|+..      .+ ++++.    ..+|.++..  ........+.+++.
T Consensus       306 gkkVaVIGsGPAGLsaA~~Lar~G~~---VtVfE~~~------~~-GG~l~----yGIP~~rlp--~~vi~~~i~~l~~~  369 (944)
T PRK12779        306 KPPIAVVGSGPSGLINAYLLAVEGFP---VTVFEAFH------DL-GGVLR----YGIPEFRLP--NQLIDDVVEKIKLL  369 (944)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCe---EEEEeeCC------CC-CceEE----ccCCCCcCh--HHHHHHHHHHHHhh
Confidence            57999999999999999999999998   99999881      11 22221    123332210  11122334567788


Q ss_pred             CcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCC-ccccCCCCCCCCCCCCEEEecCHHHHHHHHHHH------
Q 013952           85 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST-VLRLTDFGVEGADAKNIFYLREIDDADKLVEAI------  157 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~-~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~------  157 (433)
                      |++++.++.+      ++.+++++.....||+|+||||+. |+.++   +||.+..+|++..++.....+....      
T Consensus       370 Gv~f~~n~~v------G~dit~~~l~~~~yDAV~LAtGA~~pr~l~---IpG~dl~GV~~a~dfL~~~~~~~~~~~~~~~  440 (944)
T PRK12779        370 GGRFVKNFVV------GKTATLEDLKAAGFWKIFVGTGAGLPTFMN---VPGEHLLGVMSANEFLTRVNLMRGLDDDYET  440 (944)
T ss_pred             cCeEEEeEEe------ccEEeHHHhccccCCEEEEeCCCCCCCcCC---CCCCcCcCcEEHHHHHHHHHhhccccccccc
Confidence            9999987543      445666665556899999999994 76666   7888888898776655443322111      


Q ss_pred             --HhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc-cCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecC
Q 013952          158 --KAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW-CMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNA  234 (433)
Q Consensus       158 --~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~-~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~  234 (433)
                        ....+++|+|||+|.+|+++|..+.+.|.+|+++.+.+. .++.     ....+.+ ..+.||+++++..+.++..++
T Consensus       441 ~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~~mpa-----~~~e~~~-a~eeGV~~~~~~~p~~i~~d~  514 (944)
T PRK12779        441 PLPEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMPA-----RVEELHH-ALEEGINLAVLRAPREFIGDD  514 (944)
T ss_pred             cccccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCcccccc-----cHHHHHH-HHHCCCEEEeCcceEEEEecC
Confidence              112478999999999999999999999999999987753 2221     1122333 346799999999999997632


Q ss_pred             C-CcEEEEEe---------C--------CC--cEEECCEEEEcccCccChhhhhc--cccc-CCCcEEeCC-CCCCCCCC
Q 013952          235 D-GEVKEVKL---------K--------DG--RTLEADIVVVGVGGRPLISLFKG--QVAE-NKGGIETDD-FFKTSADD  290 (433)
Q Consensus       235 ~-g~~~~v~~---------~--------~g--~~i~~d~vi~a~G~~p~~~~~~~--~~~~-~~g~i~vd~-~~~t~~~~  290 (433)
                      + +++..+++         .        +|  .+++||.||+|+|+.|+..+...  ++.. .+|.|.||+ .++|+.|+
T Consensus       515 ~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~l~~~~~gle~~~~G~I~vd~~~~~Ts~pg  594 (944)
T PRK12779        515 HTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPIMKDAEPGLKTNKWGTIEVEKGSQRTSIKG  594 (944)
T ss_pred             CCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcCCChhhhhcccCceECCCCCEEECCCCCccCCCC
Confidence            2 34544432         1        12  36999999999999999765433  4555 568899997 58999999


Q ss_pred             eEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCC
Q 013952          291 VYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEG  333 (433)
Q Consensus       291 vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~  333 (433)
                      |||+|||+..+          .++..|+.+|+.||.+|...+.
T Consensus       595 VFAaGD~~~G~----------~~vv~Ai~eGr~AA~~I~~~L~  627 (944)
T PRK12779        595 VYSGGDAARGG----------STAIRAAGDGQAAAKEIVGEIP  627 (944)
T ss_pred             EEEEEcCCCCh----------HHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999765          4678899999999999987654

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=100.00  E-value=4.5e-32  Score=255.89  Aligned_cols=289  Identities=24%  Similarity=0.298  Sum_probs=198.4

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      .++|+|||+|++|+++|..|++.|++   |+++|+...+.       +++...    ++....  .........+.+.+.
T Consensus        18 ~~~VvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~~g-------g~~~~~----~~~~~~--~~~~~~~~~~~l~~~   81 (352)
T PRK12770         18 GKKVAIIGAGPAGLAAAGYLACLGYE---VHVYDKLPEPG-------GLMLFG----IPEFRI--PIERVREGVKELEEA   81 (352)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCc---EEEEeCCCCCC-------ceeeec----Cccccc--CHHHHHHHHHHHHhC
Confidence            57999999999999999999999887   99999982111       111000    000000  000011233445567


Q ss_pred             CcEEEeCceEEEEEC----CCC-----EEEeCCCcEEecceEEEccCC-CccccCCCCCCCCCCCCEEEecCHHHHHHHH
Q 013952           85 GIELILSTEIVRADI----ASK-----TLLSATGLIFKYQILVIATGS-TVLRLTDFGVEGADAKNIFYLREIDDADKLV  154 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~----~~~-----~v~~~~~~~~~~d~lvlAtG~-~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~  154 (433)
                      ++++..++.+..++.    ...     .+..+ +..++||+||||||+ .+..|+   +||.+..++++..+  ....+.
T Consensus        82 ~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~lviAtGs~~~~~~~---ipg~~~~~v~~~~~--~~~~~~  155 (352)
T PRK12770         82 GVVFHTRTKVCCGEPLHEEEGDEFVERIVSLE-ELVKKYDAVLIATGTWKSRKLG---IPGEDLPGVYSALE--YLFRIR  155 (352)
T ss_pred             CeEEecCcEEeeccccccccccccccccCCHH-HHHhhCCEEEEEeCCCCCCcCC---CCCccccCceeHHH--HHHHhh
Confidence            999998877654432    011     11111 124789999999999 466666   67766667775432  222222


Q ss_pred             HH---------HHhcCCCcEEEECCCHHHHHHHHHHHhCCCe-EEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcC
Q 013952          155 EA---------IKAKKNGKAVVVGGGYIGLELSAALKINNID-VSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKG  224 (433)
Q Consensus       155 ~~---------~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~-V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~  224 (433)
                      ..         .....+++++|+|+|++|+|+|..|.+.|.+ |+++.+.+..... .    .....+.++++||+++++
T Consensus       156 ~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~~-~----~~~~~~~l~~~gi~i~~~  230 (352)
T PRK12770        156 AAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEAP-A----GKYEIERLIARGVEFLEL  230 (352)
T ss_pred             hccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhhCC-C----CHHHHHHHHHcCCEEeec
Confidence            11         0011358999999999999999999999987 9999876543211 1    133445688999999999


Q ss_pred             CeEEEEEecCCCcEEEEEe--------------------CCCcEEECCEEEEcccCccChhhhh--ccccc-CCCcEEeC
Q 013952          225 TVAVGFTTNADGEVKEVKL--------------------KDGRTLEADIVVVGVGGRPLISLFK--GQVAE-NKGGIETD  281 (433)
Q Consensus       225 ~~v~~i~~~~~g~~~~v~~--------------------~~g~~i~~d~vi~a~G~~p~~~~~~--~~~~~-~~g~i~vd  281 (433)
                      +.+.+++.  ++++..+++                    .+++++++|.+|+++|++|+..+..  .++.. .+|++.||
T Consensus       231 ~~v~~i~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l~~~~~g~~~~~~g~i~vd  308 (352)
T PRK12770        231 VTPVRIIG--EGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPFAKECLGIELNRKGEIVVD  308 (352)
T ss_pred             cCceeeec--CCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCchhhhcccCceecCCCcEeeC
Confidence            99999875  344444432                    1235799999999999999988765  34555 56789999


Q ss_pred             CCCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccC
Q 013952          282 DFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE  332 (433)
Q Consensus       282 ~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~  332 (433)
                      ++++|+.|+||++|||+..+          ..+..|+.+|+.||.+|...+
T Consensus       309 ~~~~t~~~~vyaiGD~~~~~----------~~~~~A~~~g~~aa~~i~~~l  349 (352)
T PRK12770        309 EKHMTSREGVFAAGDVVTGP----------SKIGKAIKSGLRAAQSIHEWL  349 (352)
T ss_pred             CCcccCCCCEEEEcccccCc----------chHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998755          457889999999999997654

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=100.00  E-value=3.4e-31  Score=258.68  Aligned_cols=293  Identities=22%  Similarity=0.265  Sum_probs=198.0

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      .++|+|||||+||+++|..|++.|++   |+|+|+...+      . +++.    ..+|.+..  .........+++.+.
T Consensus       143 ~~~VvIIGaGpAGl~aA~~l~~~G~~---V~vie~~~~~------G-G~l~----~gip~~~~--~~~~~~~~~~~~~~~  206 (471)
T PRK12810        143 GKKVAVVGSGPAGLAAADQLARAGHK---VTVFERADRI------G-GLLR----YGIPDFKL--EKEVIDRRIELMEAE  206 (471)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCc---EEEEecCCCC------C-ceee----ecCCcccC--CHHHHHHHHHHHHhC
Confidence            47999999999999999999999987   9999988111      1 1111    01111110  000112234567788


Q ss_pred             CcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCC-ccccCCCCCCCCCCCCEEEecCHHHHH--HHHHH--H--
Q 013952           85 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST-VLRLTDFGVEGADAKNIFYLREIDDAD--KLVEA--I--  157 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~-~~~~~~~~~~g~~~~~v~~~~~~~~~~--~~~~~--~--  157 (433)
                      |++++.++.+. .+..     . +.....||+|++|||+. ++.++   ++|.+..++++..++....  .+...  .  
T Consensus       207 gv~~~~~~~v~-~~~~-----~-~~~~~~~d~vvlAtGa~~~~~l~---ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~  276 (471)
T PRK12810        207 GIEFRTNVEVG-KDIT-----A-EELLAEYDAVFLGTGAYKPRDLG---IPGRDLDGVHFAMDFLIQNTRRVLGDETEPF  276 (471)
T ss_pred             CcEEEeCCEEC-CcCC-----H-HHHHhhCCEEEEecCCCCCCcCC---CCCccCCCcEEHHHHHHHHHhhhcccccccc
Confidence            99999986542 1111     1 11235799999999997 55555   6787777888643321110  00000  0  


Q ss_pred             HhcCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccCCccCCCCCCH----HH-HHHHHHHHHhcCcEEEcCCeEEEEE
Q 013952          158 KAKKNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWCMPRLFTA----DI-AAFYEGYYANKGIKIIKGTVAVGFT  231 (433)
Q Consensus       158 ~~~~~~~v~ViG~G~~g~e~a~~l~~~g~-~V~li~~~~~~~~~~~~~----~~-~~~l~~~l~~~GV~v~~~~~v~~i~  231 (433)
                      ....+++++|||+|++|+|+|..+.+.|. +|+.++..+......++.    .. .....+.+++.||++++++.+.++.
T Consensus       277 ~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i~  356 (471)
T PRK12810        277 ISAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEFE  356 (471)
T ss_pred             ccCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCCCccccccccCCcccchHHHHHHHHHcCCeEEeccCceEEE
Confidence            01257899999999999999998888885 788766554322211000    00 1113455778899999999999997


Q ss_pred             ecCCCcEEEEEeC-----CC---------cEEECCEEEEcccCccChh-hhh-ccccc-CCCcEEeC-CCCCCCCCCeEE
Q 013952          232 TNADGEVKEVKLK-----DG---------RTLEADIVVVGVGGRPLIS-LFK-GQVAE-NKGGIETD-DFFKTSADDVYA  293 (433)
Q Consensus       232 ~~~~g~~~~v~~~-----~g---------~~i~~d~vi~a~G~~p~~~-~~~-~~~~~-~~g~i~vd-~~~~t~~~~vfa  293 (433)
                      . +++++..|++.     +|         .++++|.||+|+|++|+.. +++ .++.. .+|.+.+| ++++|+.|+|||
T Consensus       357 ~-~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~gl~~~~~g~i~vd~~~~~Ts~~gVfa  435 (471)
T PRK12810        357 G-ENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGVELDERGRVAAPDNAYQTSNPKVFA  435 (471)
T ss_pred             c-cCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCchhhccccCcccCCCCCEEeCCCcccCCCCCEEE
Confidence            5 46776655432     22         4799999999999999853 543 34555 46889998 799999999999


Q ss_pred             cCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCC
Q 013952          294 VGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGG  334 (433)
Q Consensus       294 ~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~  334 (433)
                      +|||+..+          .++..|+.+|+.||.+|...+.+
T Consensus       436 ~GD~~~g~----------~~~~~Av~~G~~AA~~i~~~L~g  466 (471)
T PRK12810        436 AGDMRRGQ----------SLVVWAIAEGRQAARAIDAYLMG  466 (471)
T ss_pred             ccccCCCc----------hhHHHHHHHHHHHHHHHHHHHhc
Confidence            99999754          45778999999999999877654

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=100.00  E-value=2.7e-31  Score=277.08  Aligned_cols=290  Identities=21%  Similarity=0.206  Sum_probs=203.7

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      .++|+|||||||||+||.+|+++|++   |+|+|+...+       ++++.    ..+|.+..  ..+......+.+++.
T Consensus       430 ~~kVaIIG~GPAGLsaA~~La~~G~~---VtV~E~~~~~-------GG~l~----~gip~~rl--~~e~~~~~~~~l~~~  493 (1006)
T PRK12775        430 LGKVAICGSGPAGLAAAADLVKYGVD---VTVYEALHVV-------GGVLQ----YGIPSFRL--PRDIIDREVQRLVDI  493 (1006)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCc---EEEEecCCCC-------cceee----ccCCccCC--CHHHHHHHHHHHHHC
Confidence            47999999999999999999999987   9999988111       11111    11222211  111123455677889


Q ss_pred             CcEEEeCceEEEEECCCCEEEeCCCc-EEecceEEEccCCC-ccccCCCCCCCCCCCCEEEecCHHHHHHHHHH-----H
Q 013952           85 GIELILSTEIVRADIASKTLLSATGL-IFKYQILVIATGST-VLRLTDFGVEGADAKNIFYLREIDDADKLVEA-----I  157 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~~v~~~~~~-~~~~d~lvlAtG~~-~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~-----~  157 (433)
                      |+++..++.+      ++.++..+-. ...||+||||||+. |+.++   +||.+..++++..++.....+...     .
T Consensus       494 Gv~~~~~~~v------g~~~~~~~l~~~~~yDaViIATGa~~pr~l~---IpG~~l~gV~~a~~fL~~~~~~~~~~~~~~  564 (1006)
T PRK12775        494 GVKIETNKVI------GKTFTVPQLMNDKGFDAVFLGVGAGAPTFLG---IPGEFAGQVYSANEFLTRVNLMGGDKFPFL  564 (1006)
T ss_pred             CCEEEeCCcc------CCccCHHHHhhccCCCEEEEecCCCCCCCCC---CCCcCCCCcEEHHHHHHHHHhcCccccccc
Confidence            9999988533      2222222211 24699999999994 77666   788777888876655443322100     0


Q ss_pred             --HhcCCCcEEEECCCHHHHHHHHHHHhCCCe-EEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecC
Q 013952          158 --KAKKNGKAVVVGGGYIGLELSAALKINNID-VSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNA  234 (433)
Q Consensus       158 --~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~-V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~  234 (433)
                        ....+++|+|||+|++|+++|..+.+.|.+ |+++.+....-   .+...  .-.+.+++.||++++++.+.++..++
T Consensus       565 ~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~e---m~a~~--~e~~~a~eeGI~~~~~~~p~~i~~~~  639 (1006)
T PRK12775        565 DTPISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEAE---APARI--EEIRHAKEEGIDFFFLHSPVEIYVDA  639 (1006)
T ss_pred             cCCccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCccc---CCCCH--HHHHHHHhCCCEEEecCCcEEEEeCC
Confidence              012579999999999999999999999974 78887654321   11111  11245678899999999999997655


Q ss_pred             CCcEEEEEeC-----------------CC--cEEECCEEEEcccCccChhhhhc--cccc-CCCcEEeCC-----CCCCC
Q 013952          235 DGEVKEVKLK-----------------DG--RTLEADIVVVGVGGRPLISLFKG--QVAE-NKGGIETDD-----FFKTS  287 (433)
Q Consensus       235 ~g~~~~v~~~-----------------~g--~~i~~d~vi~a~G~~p~~~~~~~--~~~~-~~g~i~vd~-----~~~t~  287 (433)
                      +|++.++++.                 .|  .++++|.||+|+|+.|+..++..  ++.+ .+|.|.+|+     +++|+
T Consensus       640 ~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~l~~~G~I~vd~~~v~~~~~Ts  719 (1006)
T PRK12775        640 EGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANPIITQSTPGLALNKWGNIAADDGKLESTQSTN  719 (1006)
T ss_pred             CCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCCChhhhhccCCcccCCCCcEEeCCCccccCcCCC
Confidence            7777666542                 12  26999999999999999876643  4555 567899996     78999


Q ss_pred             CCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCC
Q 013952          288 ADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGG  334 (433)
Q Consensus       288 ~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~  334 (433)
                      .|+|||+|||+..+          .++..|+.+|+.||.+|...+.+
T Consensus       720 ~pgVFAaGDv~~G~----------~~vv~Ai~~Gr~AA~~I~~~L~~  756 (1006)
T PRK12775        720 LPGVFAGGDIVTGG----------ATVILAMGAGRRAARSIATYLRL  756 (1006)
T ss_pred             CCCEEEecCcCCCc----------cHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999998765          46788999999999999776543

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=99.97  E-value=2e-30  Score=265.24  Aligned_cols=283  Identities=20%  Similarity=0.261  Sum_probs=187.7

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      .++|+|||||||||+||.+|++.|++   |+|+|+...+.       +.+..    .+|.+..  .........+++...
T Consensus       537 ~kkVaIIGGGPAGLSAA~~LAr~G~~---VTV~Ek~~~lG-------G~l~~----~IP~~rl--p~e~l~~~ie~l~~~  600 (1012)
T TIGR03315       537 AHKVAVIGAGPAGLSAGYFLARAGHP---VTVFEKKEKPG-------GVVKN----IIPEFRI--SAESIQKDIELVKFH  600 (1012)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCe---EEEEecccccC-------ceeee----cccccCC--CHHHHHHHHHHHHhc
Confidence            47999999999999999999999987   99999982221       11110    1122111  001112234566778


Q ss_pred             CcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHH-HhcCCC
Q 013952           85 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAI-KAKKNG  163 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~-~~~~~~  163 (433)
                      |++++.+...        .+.+.+.+...||+|+||||+.+..+.  +++|.. .+++.  .......+.... ....++
T Consensus       601 GVe~~~g~~~--------d~~ve~l~~~gYDaVIIATGA~~~~~l--~I~G~~-~~v~~--avefL~~~~~~~~~~~~GK  667 (1012)
T TIGR03315       601 GVEFKYGCSP--------DLTVAELKNQGYKYVILAIGAWKHGPL--RLEGGG-ERVLK--SLEFLRAFKEGPTINPLGK  667 (1012)
T ss_pred             CcEEEEeccc--------ceEhhhhhcccccEEEECCCCCCCCCC--CcCCCC-cceee--HHHHHHHhhccccccccCC
Confidence            9999887321        122233344679999999999753332  256543 34442  222222221110 012589


Q ss_pred             cEEEECCCHHHHHHHHHHHhC-CC-eEEEEccCCc-cCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe--------
Q 013952          164 KAVVVGGGYIGLELSAALKIN-NI-DVSMVYPEPW-CMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTT--------  232 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~-g~-~V~li~~~~~-~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~--------  232 (433)
                      +|+|||+|.+|+|+|..+.+. |. +|+++.+.+. .++. .+.+    +.+. .+.||+++++..+.++..        
T Consensus       668 ~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~Mpa-~~eE----l~~a-leeGVe~~~~~~p~~I~~g~l~v~~~  741 (1012)
T TIGR03315       668 HVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMPA-SREE----LEEA-LEDGVDFKELLSPESFEDGTLTCEVM  741 (1012)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCcccccc-CHHH----HHHH-HHcCCEEEeCCceEEEECCeEEEEEE
Confidence            999999999999999998876 74 8999988763 3332 2333    3333 357999999988887751        


Q ss_pred             -----cCCCcEEEEEeCCCcEEECCEEEEcccCccChhhhhc-cccc-CCCcEEeCCC-CCCCCCCeEEcCccccccccc
Q 013952          233 -----NADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAE-NKGGIETDDF-FKTSADDVYAVGDVATFPMKL  304 (433)
Q Consensus       233 -----~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~-~~~~-~~g~i~vd~~-~~t~~~~vfa~Gd~~~~~~~~  304 (433)
                           +.+|+...+...+..++++|.||+|+|.+|+..+++. ++.. .+|++.||++ ++|+.|+|||+|||+..+   
T Consensus       742 ~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pnt~lle~~GL~ld~~G~I~VD~~~~~Ts~pgVFAaGD~a~GP---  818 (1012)
T TIGR03315       742 KLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVDTDLLQKNGIPLDEYGWPVVNQATGETNITNVFVIGDANRGP---  818 (1012)
T ss_pred             EeecccCCCceeeecCCCeEEEEeCEEEEecCCcCChHHHHhcCcccCCCCCEEeCCCCCccCCCCEEEEeCcCCCc---
Confidence                 0111111111112236999999999999999988753 4665 5688999986 999999999999998765   


Q ss_pred             cCcccccccHHHHHHHHHHHHHHHhccC
Q 013952          305 YREMRRVEHVDHARKSAEQAVKTIMATE  332 (433)
Q Consensus       305 ~~~~~~~~~~~~A~~~g~~aa~~i~~~~  332 (433)
                             ..+..|+.+|+.||.+|++..
T Consensus       819 -------~tVv~AIaqGr~AA~nIl~~~  839 (1012)
T TIGR03315       819 -------ATIVEAIADGRKAANAILSRE  839 (1012)
T ss_pred             -------cHHHHHHHHHHHHHHHHhccc
Confidence                   467889999999999998654

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=99.97  E-value=1e-29  Score=247.30  Aligned_cols=285  Identities=21%  Similarity=0.274  Sum_probs=197.9

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      .++|+||||||+|+++|..|++.|++   |+++|+...      + ++++.    ..+|.+..  .........+++++.
T Consensus       141 ~~~V~IIG~GpaGl~aA~~l~~~G~~---V~i~e~~~~------~-gG~l~----~gip~~~~--~~~~~~~~~~~~~~~  204 (467)
T TIGR01318       141 GKRVAVIGAGPAGLACADILARAGVQ---VVVFDRHPE------I-GGLLT----FGIPSFKL--DKAVLSRRREIFTAM  204 (467)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEecCCC------C-Cceee----ecCccccC--CHHHHHHHHHHHHHC
Confidence            47999999999999999999999987   999998811      1 11211    11222111  001112345667889


Q ss_pred             CcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccc-cCCCCCCCCCCCCEEEecCHHHH--HHHHHH-----
Q 013952           85 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLR-LTDFGVEGADAKNIFYLREIDDA--DKLVEA-----  156 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~-~~~~~~~g~~~~~v~~~~~~~~~--~~~~~~-----  156 (433)
                      |++++.++.+..      .+.+.+ ....||.|++|||+.+.. ++   ++|.+.+++++..++...  ..+...     
T Consensus       205 Gv~~~~~~~v~~------~~~~~~-~~~~~D~vilAtGa~~~~~~~---i~g~~~~gV~~a~~~l~~~~~~~~~~~~~~~  274 (467)
T TIGR01318       205 GIEFHLNCEVGR------DISLDD-LLEDYDAVFLGVGTYRSMRGG---LPGEDAPGVLQALPFLIANTRQLMGLPESPE  274 (467)
T ss_pred             CCEEECCCEeCC------ccCHHH-HHhcCCEEEEEeCCCCCCcCC---CCCcCCCCcEEHHHHHHHHHHHhcCCCcccc
Confidence            999998876521      122222 134799999999998743 34   788887888865432211  111000     


Q ss_pred             --HHhcCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccCCcc-CCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013952          157 --IKAKKNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWC-MPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTT  232 (433)
Q Consensus       157 --~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~-~V~li~~~~~~-~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~  232 (433)
                        +....+++++|+|+|.+|+++|..+.+.|. +|+++.+.+.. ++. .+.+     .+.+++.||++++++.+.++..
T Consensus       275 ~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~-~~~e-----~~~~~~~GV~~~~~~~~~~i~~  348 (467)
T TIGR01318       275 EPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEANMPG-SRRE-----VANAREEGVEFLFNVQPVYIEC  348 (467)
T ss_pred             ccccccCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCcccCCC-CHHH-----HHHHHhcCCEEEecCCcEEEEE
Confidence              001246899999999999999999999995 79999987653 332 2222     2346788999999999999976


Q ss_pred             cCCCcEEEEEeC---------C-----------CcEEECCEEEEcccCccChh-hh-hccccc-CCCcEEeC----CCCC
Q 013952          233 NADGEVKEVKLK---------D-----------GRTLEADIVVVGVGGRPLIS-LF-KGQVAE-NKGGIETD----DFFK  285 (433)
Q Consensus       233 ~~~g~~~~v~~~---------~-----------g~~i~~d~vi~a~G~~p~~~-~~-~~~~~~-~~g~i~vd----~~~~  285 (433)
                      ++++++..+++.         +           ..++++|.||+|+|++|+.. ++ ..++.. ++|++.+|    ++++
T Consensus       349 ~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~~~~~gl~~~~~g~i~vd~~~~~~~~  428 (467)
T TIGR01318       349 DEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPWLAGHGITLDSWGRIITGDVSYLPYQ  428 (467)
T ss_pred             CCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCCCccccccccCccCCCCCCEEeCCccccCcc
Confidence            455666555441         1           13699999999999999853 33 334555 56889999    6799


Q ss_pred             CCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhcc
Q 013952          286 TSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMAT  331 (433)
Q Consensus       286 t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~  331 (433)
                      |+.|+|||+|||+..+          ..+..|+.+|+.||.+|...
T Consensus       429 T~~~gVfa~GD~~~~~----------~~~~~Ai~~G~~aA~~i~~~  464 (467)
T TIGR01318       429 TTNPKIFAGGDAVRGA----------DLVVTAVAEGRQAAQGILDW  464 (467)
T ss_pred             CCCCCEEEECCcCCCc----------cHHHHHHHHHHHHHHHHHHH
Confidence            9999999999998764          45678999999999998754

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=99.97  E-value=2.6e-30  Score=232.18  Aligned_cols=295  Identities=21%  Similarity=0.355  Sum_probs=214.4

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHH
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK   82 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (433)
                      ++++|||+|+|.+|.+.+..|-..-++   |++|++. +..|. |.++....     ..+ ..+     ...+.......
T Consensus        54 kKk~vVVLGsGW~a~S~lk~ldts~Yd---V~vVSPRnyFlFT-PLLpS~~v-----GTv-e~r-----SIvEPIr~i~r  118 (491)
T KOG2495|consen   54 KKKRVVVLGSGWGAISLLKKLDTSLYD---VTVVSPRNYFLFT-PLLPSTTV-----GTV-ELR-----SIVEPIRAIAR  118 (491)
T ss_pred             CCceEEEEcCchHHHHHHHhccccccc---eEEeccccceEEe-eccCCccc-----cce-eeh-----hhhhhHHHHhh
Confidence            357999999999999999888776665   9999999 44332 22211000     000 000     00111222222


Q ss_pred             hC--CcEEEeCceEEEEECCCCEEEe----CCC----cEEecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHH
Q 013952           83 EK--GIELILSTEIVRADIASKTLLS----ATG----LIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADK  152 (433)
Q Consensus        83 ~~--~v~~~~~~~v~~i~~~~~~v~~----~~~----~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~  152 (433)
                      ..  ++.++.. +.+.||++.+.|..    +++    ..+.||+||+|+|+.+..+.   +||.. ++.+.++...++++
T Consensus       119 ~k~~~~~y~eA-ec~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TFg---ipGV~-e~~~FLKEv~dAqe  193 (491)
T KOG2495|consen  119 KKNGEVKYLEA-ECTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTFG---IPGVE-ENAHFLKEVEDAQE  193 (491)
T ss_pred             ccCCCceEEec-ccEeecccccEEEEeeeccCCCcceeeecccEEEEeccCCCCCCC---CCchh-hchhhhhhhhHHHH
Confidence            22  5677774 78899999998765    333    36899999999999988776   67754 55666788889988


Q ss_pred             HHHHHHhc---------------CCCcEEEECCCHHHHHHHHHHHhC--------------CCeEEEEccCCccCCCCCC
Q 013952          153 LVEAIKAK---------------KNGKAVVVGGGYIGLELSAALKIN--------------NIDVSMVYPEPWCMPRLFT  203 (433)
Q Consensus       153 ~~~~~~~~---------------~~~~v~ViG~G~~g~e~a~~l~~~--------------g~~V~li~~~~~~~~~~~~  203 (433)
                      ++..+-.+               +-.+++|||||++|+|+|.+|+..              -.+||+++..+.+++. |+
T Consensus       194 IR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~m-Fd  272 (491)
T KOG2495|consen  194 IRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILNM-FD  272 (491)
T ss_pred             HHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHHH-HH
Confidence            86655321               224789999999999999998753              3589999999999885 89


Q ss_pred             HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCC--cEEECCEEEEcccCccChhhhh--ccccc-CCCcE
Q 013952          204 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG--RTLEADIVVVGVGGRPLISLFK--GQVAE-NKGGI  278 (433)
Q Consensus       204 ~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g--~~i~~d~vi~a~G~~p~~~~~~--~~~~~-~~g~i  278 (433)
                      ..+.+..++.+.+.||++..++.|..+..    +...+...+|  +++++-+++|+||..|....-.  ..+.- .+.++
T Consensus       273 krl~~yae~~f~~~~I~~~~~t~Vk~V~~----~~I~~~~~~g~~~~iPYG~lVWatG~~~rp~~k~lm~~i~e~~rr~L  348 (491)
T KOG2495|consen  273 KRLVEYAENQFVRDGIDLDTGTMVKKVTE----KTIHAKTKDGEIEEIPYGLLVWATGNGPRPVIKDLMKQIDEQGRRGL  348 (491)
T ss_pred             HHHHHHHHHHhhhccceeecccEEEeecC----cEEEEEcCCCceeeecceEEEecCCCCCchhhhhHhhcCCccCceee
Confidence            99999999999999999999999998864    2244555555  5799999999999877654322  22221 24489


Q ss_pred             EeCCCCCC-CCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhc
Q 013952          279 ETDDFFKT-SADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMA  330 (433)
Q Consensus       279 ~vd~~~~t-~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~  330 (433)
                      .||++||. +.+||||+|||+..+..       .++++.|.+||.++|+++-.
T Consensus       349 ~vDE~LrV~G~~nvfAiGDca~~~~~-------~~tAQVA~QqG~yLAk~fn~  394 (491)
T KOG2495|consen  349 AVDEWLRVKGVKNVFAIGDCADQRGL-------KPTAQVAEQQGAYLAKNFNK  394 (491)
T ss_pred             eeeceeeccCcCceEEeccccccccC-------ccHHHHHHHHHHHHHHHHHH
Confidence            99999998 89999999999943322       15888999999999998753

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=99.97  E-value=5.2e-30  Score=258.53  Aligned_cols=287  Identities=19%  Similarity=0.266  Sum_probs=194.7

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      .++|+|||||+||+++|..|++.|++   |+|+|++..+       ++.+..    .+|.+..  .........+.+.+.
T Consensus       193 ~k~VaIIGaGpAGl~aA~~La~~G~~---Vtv~e~~~~~-------GG~l~~----gip~~~~--~~~~~~~~~~~l~~~  256 (652)
T PRK12814        193 GKKVAIIGAGPAGLTAAYYLLRKGHD---VTIFDANEQA-------GGMMRY----GIPRFRL--PESVIDADIAPLRAM  256 (652)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCC-------Cceeee----cCCCCCC--CHHHHHHHHHHHHHc
Confidence            47999999999999999999999987   9999988111       111110    1121110  000112234556778


Q ss_pred             CcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCcc-ccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCC
Q 013952           85 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVL-RLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNG  163 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~-~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~  163 (433)
                      |+++..++.+ .++     +.+.+. ...||+|++|||+.+. .++   +||.+..+++...++...  ....-....++
T Consensus       257 Gv~i~~~~~v-~~d-----v~~~~~-~~~~DaVilAtGa~~~~~~~---ipG~~~~gv~~~~~~l~~--~~~~~~~~~gk  324 (652)
T PRK12814        257 GAEFRFNTVF-GRD-----ITLEEL-QKEFDAVLLAVGAQKASKMG---IPGEELPGVISGIDFLRN--VALGTALHPGK  324 (652)
T ss_pred             CCEEEeCCcc-cCc-----cCHHHH-HhhcCEEEEEcCCCCCCCCC---CCCcCcCCcEeHHHHHHH--hhcCCcccCCC
Confidence            9999887543 211     222221 2359999999999753 444   677776777653222111  10000112579


Q ss_pred             cEEEECCCHHHHHHHHHHHhCCC-eEEEEccCCc-cCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcE--E
Q 013952          164 KAVVVGGGYIGLELSAALKINNI-DVSMVYPEPW-CMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEV--K  239 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g~-~V~li~~~~~-~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~--~  239 (433)
                      +++|||+|++|+|+|..+.+.|. +|+++.+.+. .++. .+.+    +.+. .+.||++++++.+.++... ++.+  .
T Consensus       325 ~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa-~~~e----i~~a-~~eGV~i~~~~~~~~i~~~-~~~~~v~  397 (652)
T PRK12814        325 KVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPA-NRAE----IEEA-LAEGVSLRELAAPVSIERS-EGGLELT  397 (652)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCC-CHHH----HHHH-HHcCCcEEeccCcEEEEec-CCeEEEE
Confidence            99999999999999999999986 6999988764 3442 2223    2232 4579999999999998762 3322  1


Q ss_pred             EEEeC---------------CC--cEEECCEEEEcccCccChhhhhc-cccc-CCCcEEeCC-CCCCCCCCeEEcCcccc
Q 013952          240 EVKLK---------------DG--RTLEADIVVVGVGGRPLISLFKG-QVAE-NKGGIETDD-FFKTSADDVYAVGDVAT  299 (433)
Q Consensus       240 ~v~~~---------------~g--~~i~~d~vi~a~G~~p~~~~~~~-~~~~-~~g~i~vd~-~~~t~~~~vfa~Gd~~~  299 (433)
                      .+.+.               +|  ..+++|.||+|+|+.|+..++.. ++.. .+|++.||+ +++|+.|+|||+||++.
T Consensus       398 ~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~~ll~~~gl~~~~~G~I~vd~~~~~Ts~pgVfA~GDv~~  477 (652)
T PRK12814        398 AIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPPIAEAAGIGTSRNGTVKVDPETLQTSVAGVFAGGDCVT  477 (652)
T ss_pred             EEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCcCCcccccccCccccCCCcEeeCCCCCcCCCCCEEEcCCcCC
Confidence            12111               12  25999999999999999987743 4665 468899997 58999999999999987


Q ss_pred             ccccccCcccccccHHHHHHHHHHHHHHHhccCCCCC
Q 013952          300 FPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKT  336 (433)
Q Consensus       300 ~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~  336 (433)
                      .+          .++..|+.+|+.||.+|...+.++.
T Consensus       478 g~----------~~v~~Ai~~G~~AA~~I~~~L~g~~  504 (652)
T PRK12814        478 GA----------DIAINAVEQGKRAAHAIDLFLNGKP  504 (652)
T ss_pred             Cc----------hHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            55          4678899999999999988776543

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=99.97  E-value=3.3e-29  Score=253.93  Aligned_cols=286  Identities=19%  Similarity=0.262  Sum_probs=196.4

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      .++|+|||||||||+||..|++.|++   |+|+|+...      + ++++..    .+|.+..  .........+++++.
T Consensus       327 ~~~VaIIGaGpAGLsaA~~L~~~G~~---V~V~E~~~~------~-GG~l~~----gip~~~l--~~~~~~~~~~~~~~~  390 (654)
T PRK12769        327 DKRVAIIGAGPAGLACADVLARNGVA---VTVYDRHPE------I-GGLLTF----GIPAFKL--DKSLLARRREIFSAM  390 (654)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCC------C-Cceeee----cCCCccC--CHHHHHHHHHHHHHC
Confidence            57999999999999999999999987   999998711      1 111111    1222111  001112234567778


Q ss_pred             CcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCcc-ccCCCCCCCCCCCCEEEecCHH--HHHHHHH---H--
Q 013952           85 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVL-RLTDFGVEGADAKNIFYLREID--DADKLVE---A--  156 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~-~~~~~~~~g~~~~~v~~~~~~~--~~~~~~~---~--  156 (433)
                      |+++..++.+.      ..+...+ ....||+|++|||+... .++   +++.+..+++...++.  ....+..   .  
T Consensus       391 Gv~~~~~~~v~------~~i~~~~-~~~~~DavilAtGa~~~~~l~---i~g~~~~Gv~~a~~~l~~~~~~~~~~~~~~~  460 (654)
T PRK12769        391 GIEFELNCEVG------KDISLES-LLEDYDAVFVGVGTYRSMKAG---LPNEDAPGVYDALPFLIANTKQVMGLEELPE  460 (654)
T ss_pred             CeEEECCCEeC------CcCCHHH-HHhcCCEEEEeCCCCCCCCCC---CCCCCCCCeEEhHHHHHHHHhhhccCccccc
Confidence            99999886552      1111111 12479999999998643 334   6777777877542211  0001000   0  


Q ss_pred             --HHhcCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccCCcc-CCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013952          157 --IKAKKNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWC-MPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTT  232 (433)
Q Consensus       157 --~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~-~V~li~~~~~~-~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~  232 (433)
                        .....+++++|||+|.+|+++|..+.+.|. +|+++.+.+.. ++.  .+.    ..+.+++.||++++++.+.++..
T Consensus       461 ~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~--~~~----e~~~~~~~Gv~~~~~~~~~~i~~  534 (654)
T PRK12769        461 EPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPG--SKK----EVKNAREEGANFEFNVQPVALEL  534 (654)
T ss_pred             cccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCCCCC--CHH----HHHHHHHcCCeEEeccCcEEEEE
Confidence              001246899999999999999999989986 79999876553 332  222    23457889999999999999976


Q ss_pred             cCCCcEEEEEeC---------CC-----------cEEECCEEEEcccCccCh-hhhh-ccccc-CCCcEEeCC----CCC
Q 013952          233 NADGEVKEVKLK---------DG-----------RTLEADIVVVGVGGRPLI-SLFK-GQVAE-NKGGIETDD----FFK  285 (433)
Q Consensus       233 ~~~g~~~~v~~~---------~g-----------~~i~~d~vi~a~G~~p~~-~~~~-~~~~~-~~g~i~vd~----~~~  285 (433)
                      ++++++..|++.         +|           .++++|.||+|+|+.|+. .++. .++.+ .+|.|.+|+    +++
T Consensus       535 ~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~  614 (654)
T PRK12769        535 NEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPWLESHGVTVDKWGRIIADVESQYRYQ  614 (654)
T ss_pred             CCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCCccccccccCCcCCCCCCEEeCCCcccCcc
Confidence            456777666541         12           259999999999999985 3443 35666 568899986    489


Q ss_pred             CCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccC
Q 013952          286 TSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE  332 (433)
Q Consensus       286 t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~  332 (433)
                      |+.|+|||+||++..+          .++..|+.+|+.||.+|...+
T Consensus       615 Ts~~gVfAaGD~~~g~----------~~vv~Ai~~Gr~AA~~I~~~L  651 (654)
T PRK12769        615 TSNPKIFAGGDAVRGA----------DLVVTAMAEGRHAAQGIIDWL  651 (654)
T ss_pred             cCCCCEEEcCCcCCCC----------cHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999998765          457889999999999998654

>PRK13984 putative oxidoreductase; Provisional

Probab=99.97  E-value=3.9e-29  Score=252.06  Aligned_cols=283  Identities=22%  Similarity=0.267  Sum_probs=192.7

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHh
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   83 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (433)
                      +.++|+|||+|++|+++|..|++.|++   |+|+|+...+.       +++.    ..++.+..  .........+++++
T Consensus       282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~---v~vie~~~~~g-------G~~~----~~i~~~~~--~~~~~~~~~~~~~~  345 (604)
T PRK13984        282 KNKKVAIVGSGPAGLSAAYFLATMGYE---VTVYESLSKPG-------GVMR----YGIPSYRL--PDEALDKDIAFIEA  345 (604)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCCCC-------ceEe----ecCCcccC--CHHHHHHHHHHHHH
Confidence            357899999999999999999999987   99999882111       1110    01111100  00001223456778


Q ss_pred             CCcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCC-ccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHh---
Q 013952           84 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST-VLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKA---  159 (433)
Q Consensus        84 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~-~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~---  159 (433)
                      .|++++.++.+.. +     +...+ ....||+||+|||+. ++.++   ++|.+..+++..  ......+...+..   
T Consensus       346 ~gv~~~~~~~v~~-~-----~~~~~-~~~~yD~vilAtGa~~~r~l~---i~G~~~~gv~~a--~~~l~~~~~~~~~~~~  413 (604)
T PRK13984        346 LGVKIHLNTRVGK-D-----IPLEE-LREKHDAVFLSTGFTLGRSTR---IPGTDHPDVIQA--LPLLREIRDYLRGEGP  413 (604)
T ss_pred             CCcEEECCCEeCC-c-----CCHHH-HHhcCCEEEEEcCcCCCccCC---CCCcCCcCeEeH--HHHHHHHHhhhccCCC
Confidence            8999999866631 1     11111 235799999999987 45555   678776777753  3333333333211   


Q ss_pred             --cCCCcEEEECCCHHHHHHHHHHHhCCC------eEEEEccC--CccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEE
Q 013952          160 --KKNGKAVVVGGGYIGLELSAALKINNI------DVSMVYPE--PWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVG  229 (433)
Q Consensus       160 --~~~~~v~ViG~G~~g~e~a~~l~~~g~------~V~li~~~--~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~  229 (433)
                        ..+++++|||+|.+|+|+|..+.+.+.      +|+++...  ...++. ...+    +.+ +.+.||++++++.+.+
T Consensus       414 ~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~~~r~~~~~~~-~~~e----~~~-~~~~GV~i~~~~~~~~  487 (604)
T PRK13984        414 KPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLERTFEEMPA-DMEE----IEE-GLEEGVVIYPGWGPME  487 (604)
T ss_pred             cCCCCCcEEEECCchHHHHHHHHHHhccccccCceEEEEeccccCcccCCC-CHHH----HHH-HHHcCCEEEeCCCCEE
Confidence              136899999999999999999998753      67876432  112221 1112    223 3467999999998888


Q ss_pred             EEecCCCcEEEEEeC-------------------CCcEEECCEEEEcccCccChhhhhc----ccccCCCcEEeCCCCCC
Q 013952          230 FTTNADGEVKEVKLK-------------------DGRTLEADIVVVGVGGRPLISLFKG----QVAENKGGIETDDFFKT  286 (433)
Q Consensus       230 i~~~~~g~~~~v~~~-------------------~g~~i~~d~vi~a~G~~p~~~~~~~----~~~~~~g~i~vd~~~~t  286 (433)
                      +.. +++++..+++.                   ++.++++|.||+|+|++|++.++..    .+..++|+|.||+++||
T Consensus       488 i~~-~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~~~~~~l~~~~G~i~vd~~~~T  566 (604)
T PRK13984        488 VVI-ENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEELKSKLEFVRGRILTNEYGQT  566 (604)
T ss_pred             EEc-cCCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCChhhhhhhhccCccccCCeEEeCCCCcc
Confidence            865 45666555442                   1246999999999999999887753    24446788999999999


Q ss_pred             CCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccC
Q 013952          287 SADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE  332 (433)
Q Consensus       287 ~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~  332 (433)
                      ++|+|||+|||+..+           .+..|+.+|+.||.+|...+
T Consensus       567 s~~gVfAaGD~~~~~-----------~~v~Ai~~G~~AA~~I~~~L  601 (604)
T PRK13984        567 SIPWLFAGGDIVHGP-----------DIIHGVADGYWAAEGIDMYL  601 (604)
T ss_pred             CCCCEEEecCcCCch-----------HHHHHHHHHHHHHHHHHHHh
Confidence            999999999999764           24678999999999997654

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=99.97  E-value=3.6e-29  Score=244.41  Aligned_cols=293  Identities=23%  Similarity=0.276  Sum_probs=195.2

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhCC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKG   85 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (433)
                      ++|+|||||++|+++|.+|++.|++   |+|+|+...+.       +++.    ..+|.+..  .........+++++.|
T Consensus       144 ~~V~IIGaG~aGl~aA~~L~~~g~~---V~v~e~~~~~g-------G~l~----~gip~~~~--~~~~~~~~~~~~~~~G  207 (485)
T TIGR01317       144 KKVAVVGSGPAGLAAADQLNRAGHT---VTVFEREDRCG-------GLLM----YGIPNMKL--DKAIVDRRIDLLSAEG  207 (485)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCe---EEEEecCCCCC-------ceee----ccCCCccC--CHHHHHHHHHHHHhCC
Confidence            7999999999999999999999987   99999882111       1110    01111110  0001123346677889


Q ss_pred             cEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCC-ccccCCCCCCCCCCCCEEEecCHH-HHHHHHH--HH----
Q 013952           86 IELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST-VLRLTDFGVEGADAKNIFYLREID-DADKLVE--AI----  157 (433)
Q Consensus        86 v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~-~~~~~~~~~~g~~~~~v~~~~~~~-~~~~~~~--~~----  157 (433)
                      ++++.++.+. .+.     .. +.....||+|++|||+. |+.++   ++|.+.+++++..++. +......  ..    
T Consensus       208 v~~~~~~~v~-~~~-----~~-~~~~~~~d~VilAtGa~~~~~l~---i~G~~~~gV~~~~~~l~~~~~~~~~~~~~~~~  277 (485)
T TIGR01317       208 IDFVTNTEIG-VDI-----SA-DELKEQFDAVVLAGGATKPRDLP---IPGRELKGIHYAMEFLPSATKALLGKDFKDII  277 (485)
T ss_pred             CEEECCCEeC-Ccc-----CH-HHHHhhCCEEEEccCCCCCCcCC---CCCcCCCCcEeHHHHHHHHhhhhccccccccc
Confidence            9999987653 111     11 11235799999999997 67666   6887777888653322 1111100  00    


Q ss_pred             -HhcCCCcEEEECCCHHHHHHHHHHHhCC-CeEEEEccCCccCCCCC--------CH--HHHHHHHHHHHhcCcEE-EcC
Q 013952          158 -KAKKNGKAVVVGGGYIGLELSAALKINN-IDVSMVYPEPWCMPRLF--------TA--DIAAFYEGYYANKGIKI-IKG  224 (433)
Q Consensus       158 -~~~~~~~v~ViG~G~~g~e~a~~l~~~g-~~V~li~~~~~~~~~~~--------~~--~~~~~l~~~l~~~GV~v-~~~  224 (433)
                       ....+++|+|||+|++|+|+|..+.+.| .+|++++..+..+....        +.  +.....++..+..||.+ +++
T Consensus       278 ~~~~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~~~  357 (485)
T TIGR01317       278 FIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPREYS  357 (485)
T ss_pred             cccCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCCChhhcccccCCCccchhhhhHHHHHhhhhhcCccceEEe
Confidence             0125789999999999999988777776 57999987765432111        01  12223444445567754 567


Q ss_pred             CeEEEEEecCCCcEEEEEe--------CCC-----------cEEECCEEEEcccCc-cChhhhhc-cccc-CCCcEEe-C
Q 013952          225 TVAVGFTTNADGEVKEVKL--------KDG-----------RTLEADIVVVGVGGR-PLISLFKG-QVAE-NKGGIET-D  281 (433)
Q Consensus       225 ~~v~~i~~~~~g~~~~v~~--------~~g-----------~~i~~d~vi~a~G~~-p~~~~~~~-~~~~-~~g~i~v-d  281 (433)
                      +.+.+|..++++++.++++        .+|           .++++|.||+|+|+. |+..++.. ++.. .+|.+.+ |
T Consensus       358 ~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~p~~~~~~~~gl~~~~~G~i~~~~  437 (485)
T TIGR01317       358 ILTKEFIGDDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQILLDDFGVKKTRRGNISAGY  437 (485)
T ss_pred             cCcEEEEEcCCCeEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCcCCCccccccccCcccCCCCCEEecC
Confidence            7888887644466666653        123           269999999999986 88877653 4655 4677754 5


Q ss_pred             CCCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCC
Q 013952          282 DFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGG  334 (433)
Q Consensus       282 ~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~  334 (433)
                      ++++|+.|+|||+|||+..+          ..+..|..+|+.||.+|...+.+
T Consensus       438 ~~~~Ts~~gVfAaGD~~~g~----------~~~~~Av~~G~~AA~~i~~~L~g  480 (485)
T TIGR01317       438 DDYSTSIPGVFAAGDCRRGQ----------SLIVWAINEGRKAAAAVDRYLMG  480 (485)
T ss_pred             CCceECCCCEEEeeccCCCc----------HHHHHHHHHHHHHHHHHHHHHhc
Confidence            78999999999999998754          45677999999999999876654

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=3.3e-30  Score=224.93  Aligned_cols=290  Identities=21%  Similarity=0.280  Sum_probs=211.5

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      .|||+||||||||-+||.+.+|+|.+.+   ++-..        +.+..+..-...++.+.+...|+.....+.+..+++
T Consensus       211 ~yDVLvVGgGPAgaaAAiYaARKGiRTG---l~aer--------fGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y  279 (520)
T COG3634         211 AYDVLVVGGGPAGAAAAIYAARKGIRTG---LVAER--------FGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQY  279 (520)
T ss_pred             CceEEEEcCCcchhHHHHHHHhhcchhh---hhhhh--------hCCeeccccchhheeccccccchHHHHHHHHHHhhc
Confidence            5999999999999999999999998732   22111        111122222223333333333444455667777888


Q ss_pred             CcEEEeCceEEEEECC-----CCEEEeCCCcEEecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHh
Q 013952           85 GIELILSTEIVRADIA-----SKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKA  159 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~-----~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~  159 (433)
                      .+++....+...+.+.     -..|++++|-.+.++.+|+|||++++..+.||-.....++|.++..++....       
T Consensus       280 ~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArWRn~nvPGE~e~rnKGVayCPHCDGPLF-------  352 (520)
T COG3634         280 DVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGPLF-------  352 (520)
T ss_pred             CchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcchhcCCCCchHHHhhCCeeeCCCCCCccc-------
Confidence            9988877777777663     2368899999999999999999999888743333344678888877766543       


Q ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHH-hcCcEEEcCCeEEEEEecCCCcE
Q 013952          160 KKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYA-NKGIKIIKGTVAVGFTTNADGEV  238 (433)
Q Consensus       160 ~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~-~~GV~v~~~~~v~~i~~~~~g~~  238 (433)
                       ++|+|+|||||.+|+|.|..|+-.-..||+++-.+.+..   |    +.+++.++ -.+|+++.+..-++|.. +..++
T Consensus       353 -~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eLkA---D----~VLq~kl~sl~Nv~ii~na~Ttei~G-dg~kV  423 (520)
T COG3634         353 -KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELKA---D----AVLQDKLRSLPNVTIITNAQTTEVKG-DGDKV  423 (520)
T ss_pred             -CCceEEEECCCcchHHHHHhHHhhhheeeeeecchhhhh---H----HHHHHHHhcCCCcEEEecceeeEEec-CCcee
Confidence             799999999999999999999988788999875444322   2    23444444 36899999999999987 33456


Q ss_pred             EEEEeCC---C--cEEECCEEEEcccCccChhhhhccccc-CCCcEEeCCCCCCCCCCeEEcCccccccccccCcccccc
Q 013952          239 KEVKLKD---G--RTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVE  312 (433)
Q Consensus       239 ~~v~~~~---g--~~i~~d~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~  312 (433)
                      .++...+   |  ..++-+-|++-+|..||+++++..+++ ..|-|.||.+..||.|+|||+|||+..+.         +
T Consensus       424 ~Gl~Y~dr~sge~~~l~LeGvFVqIGL~PNT~WLkg~vel~~rGEIivD~~g~TsvpGvFAAGD~T~~~y---------K  494 (520)
T COG3634         424 TGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEWLKGAVELNRRGEIIVDARGETNVPGVFAAGDCTTVPY---------K  494 (520)
T ss_pred             cceEEEeccCCceeEEEeeeeEEEEecccChhHhhchhhcCcCccEEEecCCCcCCCceeecCcccCCcc---------c
Confidence            6665543   3  346778899999999999999988888 67889999999999999999999998876         3


Q ss_pred             cHHHHHHHHHHHHHHHhc
Q 013952          313 HVDHARKSAEQAVKTIMA  330 (433)
Q Consensus       313 ~~~~A~~~g~~aa~~i~~  330 (433)
                      ++..|+.+|..|+.+.+.
T Consensus       495 QIIIamG~GA~AaL~AFD  512 (520)
T COG3634         495 QIIIAMGEGAKASLSAFD  512 (520)
T ss_pred             eEEEEecCcchhhhhhhh
Confidence            444455556555555443

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=99.96  E-value=2.5e-28  Score=246.37  Aligned_cols=287  Identities=21%  Similarity=0.273  Sum_probs=196.6

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      .++|+|||||++||++|..|++.|++   |+++|+...      + ++++.    ..+|.+...  ........+++++.
T Consensus       310 ~kkVaIIG~GpaGl~aA~~L~~~G~~---Vtv~e~~~~------~-GG~l~----~gip~~~l~--~~~~~~~~~~~~~~  373 (639)
T PRK12809        310 SEKVAVIGAGPAGLGCADILARAGVQ---VDVFDRHPE------I-GGMLT----FGIPPFKLD--KTVLSQRREIFTAM  373 (639)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCCc---EEEEeCCCC------C-CCeee----ccCCcccCC--HHHHHHHHHHHHHC
Confidence            58999999999999999999999987   999998821      1 11211    112222110  01112234667789


Q ss_pred             CcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCcc-ccCCCCCCCCCCCCEEEecCHHHHH--HHHHH-----
Q 013952           85 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVL-RLTDFGVEGADAKNIFYLREIDDAD--KLVEA-----  156 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~-~~~~~~~~g~~~~~v~~~~~~~~~~--~~~~~-----  156 (433)
                      |+++..++.+.      +.+.+.+ ....||++++|||+.+. .++   +++.+..++++..++....  .+...     
T Consensus       374 Gv~~~~~~~v~------~~~~~~~-l~~~~DaV~latGa~~~~~~~---i~g~~~~gv~~a~~~l~~~~~~~~~~~~~~~  443 (639)
T PRK12809        374 GIDFHLNCEIG------RDITFSD-LTSEYDAVFIGVGTYGMMRAD---LPHEDAPGVIQALPFLTAHTRQLMGLPESEE  443 (639)
T ss_pred             CeEEEcCCccC------CcCCHHH-HHhcCCEEEEeCCCCCCCCCC---CCCCccCCcEeHHHHHHHHHHhhccCccccc
Confidence            99999886552      1122222 23579999999998653 333   6777777777632221110  00000     


Q ss_pred             --HHhcCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccCCcc-CCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013952          157 --IKAKKNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWC-MPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTT  232 (433)
Q Consensus       157 --~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~-~V~li~~~~~~-~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~  232 (433)
                        +....+++++|+|+|.++++.|..+.+.|. +|+++.+.+.. ++. .+.++     ..+++.||++++++.+.+|..
T Consensus       444 ~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~-~~~e~-----~~a~~eGv~~~~~~~~~~i~~  517 (639)
T PRK12809        444 YPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPG-SRKEV-----VNAREEGVEFQFNVQPQYIAC  517 (639)
T ss_pred             cccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCC-CHHHH-----HHHHHcCCeEEeccCCEEEEE
Confidence              011247899999999999999999888884 89999887554 332 22222     235788999999999999986


Q ss_pred             cCCCcEEEEEe---C------CC-----------cEEECCEEEEcccCccChh-hhh-ccccc-CCCcEEeCC----CCC
Q 013952          233 NADGEVKEVKL---K------DG-----------RTLEADIVVVGVGGRPLIS-LFK-GQVAE-NKGGIETDD----FFK  285 (433)
Q Consensus       233 ~~~g~~~~v~~---~------~g-----------~~i~~d~vi~a~G~~p~~~-~~~-~~~~~-~~g~i~vd~----~~~  285 (433)
                      +++|++..+++   .      +|           .++++|.||+|+|++|+.. ++. .++.. .+|.|.+|+    +++
T Consensus       518 ~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~  597 (639)
T PRK12809        518 DEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQGSGIKLDKWGLIQTGDVGYLPTQ  597 (639)
T ss_pred             CCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCCCccccccccCcccCCCCCEEeCCCcccCcc
Confidence            55666665533   1      12           3699999999999999753 443 34655 467888986    489


Q ss_pred             CCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCC
Q 013952          286 TSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEG  333 (433)
Q Consensus       286 t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~  333 (433)
                      |+.|+|||+||++..+          .++..|+.+|+.||.+|...+.
T Consensus       598 Ts~~gVfA~GD~~~g~----------~~vv~Ai~~Gr~AA~~i~~~l~  635 (639)
T PRK12809        598 THLKKVFAGGDAVHGA----------DLVVTAMAAGRQAARDMLTLFD  635 (639)
T ss_pred             cCCCCEEEcCCCCCCc----------hHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999998765          4578899999999999987653

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=99.96  E-value=1.7e-27  Score=250.35  Aligned_cols=281  Identities=15%  Similarity=0.134  Sum_probs=194.0

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      .+||+|||||||||+||.+|++.|++   |+|+|++..+      .+.+....  ..+++...   ........+.+...
T Consensus       163 ~~dVvIIGaGPAGLaAA~~aar~G~~---V~liD~~~~~------GG~~~~~~--~~~~g~~~---~~~~~~~~~~l~~~  228 (985)
T TIGR01372       163 HCDVLVVGAGPAGLAAALAAARAGAR---VILVDEQPEA------GGSLLSEA--ETIDGKPA---ADWAAATVAELTAM  228 (985)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCc---EEEEecCCCC------CCeeeccc--cccCCccH---HHHHHHHHHHHhcC
Confidence            57999999999999999999999988   9999998111      11111110  11111100   00011223334434


Q ss_pred             -CcEEEeCceEEEEECCCCEEEe---C-------C----C--cEEecceEEEccCCCccccCCCCCCCCCCCCEEEecCH
Q 013952           85 -GIELILSTEIVRADIASKTLLS---A-------T----G--LIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREI  147 (433)
Q Consensus        85 -~v~~~~~~~v~~i~~~~~~v~~---~-------~----~--~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~  147 (433)
                       ++++..++.|..+.........   .       +    +  .++.|++||||||+.++.++   ++|.+.+++++....
T Consensus       229 ~~v~v~~~t~V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~p---ipG~~~pgV~~~~~~  305 (985)
T TIGR01372       229 PEVTLLPRTTAFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPLV---FANNDRPGVMLAGAA  305 (985)
T ss_pred             CCcEEEcCCEEEEEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCCC---CCCCCCCCcEEchHH
Confidence             5999998888887653321111   0       0    1  26899999999999998777   688888888876543


Q ss_pred             HHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCe
Q 013952          148 DDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTV  226 (433)
Q Consensus       148 ~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~-~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~  226 (433)
                      ....   ......++++++|+|+|++++|+|..|.+.|. .|++++..+.+         ...+.+.+++.||++++++.
T Consensus       306 ~~~l---~~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~---------~~~l~~~L~~~GV~i~~~~~  373 (985)
T TIGR01372       306 RTYL---NRYGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV---------SPEARAEARELGIEVLTGHV  373 (985)
T ss_pred             HHHH---HhhCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch---------hHHHHHHHHHcCCEEEcCCe
Confidence            3221   11111257899999999999999999999995 57888765432         23456778999999999999


Q ss_pred             EEEEEecCCCcEEEEEeC----CCcEEECCEEEEcccCccChhhhhc-ccccCCCcEEeCCCC-----CCCCCCeEEcCc
Q 013952          227 AVGFTTNADGEVKEVKLK----DGRTLEADIVVVGVGGRPLISLFKG-QVAENKGGIETDDFF-----KTSADDVYAVGD  296 (433)
Q Consensus       227 v~~i~~~~~g~~~~v~~~----~g~~i~~d~vi~a~G~~p~~~~~~~-~~~~~~g~i~vd~~~-----~t~~~~vfa~Gd  296 (433)
                      +.++..  ++.+..|++.    ++++++||.|+++.|++||++++.. +..     +..|+..     .|+.|+||++||
T Consensus       374 v~~i~g--~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~-----~~~~~~~~~~~~~t~v~gVyaaGD  446 (985)
T TIGR01372       374 VAATEG--GKRVSGVAVARNGGAGQRLEADALAVSGGWTPVVHLFSQRGGK-----LAWDAAIAAFLPGDAVQGCILAGA  446 (985)
T ss_pred             EEEEec--CCcEEEEEEEecCCceEEEECCEEEEcCCcCchhHHHHhcCCC-----eeeccccCceecCCCCCCeEEeec
Confidence            999976  4555555553    4568999999999999999998743 222     1222211     377999999999


Q ss_pred             cccccccccCcccccccHHHHHHHHHHHHHHHhccC
Q 013952          297 VATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE  332 (433)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~  332 (433)
                      +++..           .+..|..+|+.||..|+...
T Consensus       447 ~~g~~-----------~~~~A~~eG~~Aa~~i~~~l  471 (985)
T TIGR01372       447 ANGLF-----------GLAAALADGAAAGAAAARAA  471 (985)
T ss_pred             cCCcc-----------CHHHHHHHHHHHHHHHHHHc
Confidence            98663           46778999999999886543

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=7.9e-29  Score=203.37  Aligned_cols=294  Identities=23%  Similarity=0.221  Sum_probs=208.6

Q ss_pred             CCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCcccc-cCCCCCCCCHh
Q 013952            2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVC-VGSGGERLLPE   79 (433)
Q Consensus         2 m~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~   79 (433)
                      |...-+|+|||+|||+..||.++++..++   -+|+|-. ...   ....+.+.......++|+|+.. .|.++.+...+
T Consensus         5 ~~h~e~v~IiGSGPAa~tAAiYaaraelk---PllfEG~~~~~---i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrk   78 (322)
T KOG0404|consen    5 MTHNENVVIIGSGPAAHTAAIYAARAELK---PLLFEGMMANG---IAPGGQLTTTTDVENFPGFPDGITGPELMDKMRK   78 (322)
T ss_pred             ceeeeeEEEEccCchHHHHHHHHhhcccC---ceEEeeeeccC---cCCCceeeeeeccccCCCCCcccccHHHHHHHHH
Confidence            33345899999999999999999998877   4777655 111   1123334455567888998864 34445556667


Q ss_pred             HHHhCCcEEEeCceEEEEECCCC-EEEeCCCcEEecceEEEccCCCccccCCCCCCCCC-----CCCEEEecCHHHHHHH
Q 013952           80 WYKEKGIELILSTEIVRADIASK-TLLSATGLIFKYQILVIATGSTVLRLTDFGVEGAD-----AKNIFYLREIDDADKL  153 (433)
Q Consensus        80 ~~~~~~v~~~~~~~v~~i~~~~~-~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~-----~~~v~~~~~~~~~~~~  153 (433)
                      ...++|.+++.. .|..++.+.+ ...+.+.+.+.+|.+|+|||+..+...   +||.-     ..++..+.-++.+.- 
T Consensus        79 qs~r~Gt~i~tE-tVskv~~sskpF~l~td~~~v~~~avI~atGAsAkRl~---~pg~ge~~fWqrGiSaCAVCDGaap-  153 (322)
T KOG0404|consen   79 QSERFGTEIITE-TVSKVDLSSKPFKLWTDARPVTADAVILATGASAKRLH---LPGEGEGEFWQRGISACAVCDGAAP-  153 (322)
T ss_pred             HHHhhcceeeee-ehhhccccCCCeEEEecCCceeeeeEEEecccceeeee---cCCCCcchHHhcccchhhcccCcch-
Confidence            777889999885 8888887765 333446678999999999999888776   34431     222322222222211 


Q ss_pred             HHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEec
Q 013952          154 VEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN  233 (433)
Q Consensus       154 ~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~  233 (433)
                           -++.|..+|||||.+++|-|.+|.+++.+|+++.|.+.+..   ...+   .++..+..+|++++++.+.+...+
T Consensus       154 -----ifrnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~fRA---s~~M---q~ra~~npnI~v~~nt~~~ea~gd  222 (322)
T KOG0404|consen  154 -----IFRNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHFRA---SKIM---QQRAEKNPNIEVLYNTVAVEALGD  222 (322)
T ss_pred             -----hhcCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhhhH---HHHH---HHHHhcCCCeEEEechhhhhhccC
Confidence                 12578999999999999999999999999999999887643   2222   234456778999999988887762


Q ss_pred             CCCcE-----EEEEeCCCcEEECCEEEEcccCccChhhhhccccc-CCCcEEeC-CCCCCCCCCeEEcCccccccccccC
Q 013952          234 ADGEV-----KEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETD-DFFKTSADDVYAVGDVATFPMKLYR  306 (433)
Q Consensus       234 ~~g~~-----~~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd-~~~~t~~~~vfa~Gd~~~~~~~~~~  306 (433)
                       .+.+     ..+.+.+...++.+-++.++|..|++.+++..+++ .+|+|++- ..-.|++|++||+||+.....    
T Consensus       223 -~~~l~~l~ikn~~tge~~dl~v~GlFf~IGH~Pat~~l~gqve~d~~GYi~t~pgts~TsvpG~FAAGDVqD~ky----  297 (322)
T KOG0404|consen  223 -GKLLNGLRIKNVKTGEETDLPVSGLFFAIGHSPATKFLKGQVELDEDGYIVTRPGTSLTSVPGVFAAGDVQDKKY----  297 (322)
T ss_pred             -cccccceEEEecccCcccccccceeEEEecCCchhhHhcCceeeccCceEEeccCcccccccceeeccccchHHH----
Confidence             2222     23333334579999999999999999999988888 68999887 457889999999999987543    


Q ss_pred             cccccccHHHHHHHHHHHHHH
Q 013952          307 EMRRVEHVDHARKSAEQAVKT  327 (433)
Q Consensus       307 ~~~~~~~~~~A~~~g~~aa~~  327 (433)
                           .++..|...|.++|..
T Consensus       298 -----RQAvTaAgsGciaald  313 (322)
T KOG0404|consen  298 -----RQAVTAAGSGCIAALD  313 (322)
T ss_pred             -----HHHHhhhccchhhhhh
Confidence                 2334444555555544

>PLN02852 ferredoxin-NADP+ reductase

Probab=99.96  E-value=2.3e-27  Score=227.96  Aligned_cols=294  Identities=18%  Similarity=0.245  Sum_probs=192.3

Q ss_pred             cCeEEEECCCHHHHHHHHHHHH--cCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHH
Q 013952            5 SFKYVILGGGVSAGYAAREFAK--QGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK   82 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~--~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (433)
                      .++|+||||||||++||..|++  .|++   |+|+|+...++.       ++...-....+...     .....+..++.
T Consensus        26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~---Vtv~E~~p~pgG-------lvr~gvaP~~~~~k-----~v~~~~~~~~~   90 (491)
T PLN02852         26 PLHVCVVGSGPAGFYTADKLLKAHDGAR---VDIIERLPTPFG-------LVRSGVAPDHPETK-----NVTNQFSRVAT   90 (491)
T ss_pred             CCcEEEECccHHHHHHHHHHHhhCCCCe---EEEEecCCCCcc-------eEeeccCCCcchhH-----HHHHHHHHHHH
Confidence            4689999999999999999987  4665   999999933332       22211101111000     00123345566


Q ss_pred             hCCcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCc-cccCCCCCCCCCCCCEEEecCHHHHHHHH-H--HHH
Q 013952           83 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTV-LRLTDFGVEGADAKNIFYLREIDDADKLV-E--AIK  158 (433)
Q Consensus        83 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~-~~~~~~~~~g~~~~~v~~~~~~~~~~~~~-~--~~~  158 (433)
                      ..+++++.+..+      ++.+.+++-. ..||+||+|||+.+ +.++   +||.+.++++...++.....-. .  .+.
T Consensus        91 ~~~v~~~~nv~v------g~dvtl~~L~-~~yDaVIlAtGa~~~~~l~---IpG~d~~gV~~a~~fl~~~ng~~d~~~~~  160 (491)
T PLN02852         91 DDRVSFFGNVTL------GRDVSLSELR-DLYHVVVLAYGAESDRRLG---IPGEDLPGVLSAREFVWWYNGHPDCVHLP  160 (491)
T ss_pred             HCCeEEEcCEEE------CccccHHHHh-hhCCEEEEecCCCCCCCCC---CCCCCCCCeEEHHHHHHHhhcchhhhhhh
Confidence            678888876443      2334443332 47999999999985 4455   7888888899766542211100 0  011


Q ss_pred             --hcCCCcEEEECCCHHHHHHHHHHHhC--------------------C-CeEEEEccCCccCCCCCCHHH---------
Q 013952          159 --AKKNGKAVVVGGGYIGLELSAALKIN--------------------N-IDVSMVYPEPWCMPRLFTADI---------  206 (433)
Q Consensus       159 --~~~~~~v~ViG~G~~g~e~a~~l~~~--------------------g-~~V~li~~~~~~~~~~~~~~~---------  206 (433)
                        ...+++++|||+|++|+++|..|.+.                    + .+|+++.|....-..+-..++         
T Consensus       161 ~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~ft~~Elrel~~l~~~  240 (491)
T PLN02852        161 PDLKSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELRELLGLKNV  240 (491)
T ss_pred             hcccCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHhCCCCHHHHHHHhccCCC
Confidence              11478999999999999999998775                    5 469999887642211111111         


Q ss_pred             ----------------------------HHHHHHHHHh---------cCcEEEcCCeEEEEEec--CCCcEEEEEeC---
Q 013952          207 ----------------------------AAFYEGYYAN---------KGIKIIKGTVAVGFTTN--ADGEVKEVKLK---  244 (433)
Q Consensus       207 ----------------------------~~~l~~~l~~---------~GV~v~~~~~v~~i~~~--~~g~~~~v~~~---  244 (433)
                                                  .+.+.+...+         ++|.|++...+.+|...  +++++.++++.   
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~~  320 (491)
T PLN02852        241 RVRIKEADLTLSPEDEEELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVAGVKLERTV  320 (491)
T ss_pred             ceeechhhhccccchhhhhccchhhHHHHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcEEEEEEEEee
Confidence                                        1122222222         57999999999999742  23567666653   


Q ss_pred             --------------CC--cEEECCEEEEcccCc--cChhh-hhc--cccc-CCCcEEeCCCCCCCCCCeEEcCccccccc
Q 013952          245 --------------DG--RTLEADIVVVGVGGR--PLISL-FKG--QVAE-NKGGIETDDFFKTSADDVYAVGDVATFPM  302 (433)
Q Consensus       245 --------------~g--~~i~~d~vi~a~G~~--p~~~~-~~~--~~~~-~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~  302 (433)
                                    +|  +.++||.||.++|++  |...+ +..  ++.. .+|+|.+|+.++|+.|+|||+|||..++.
T Consensus       321 l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~~p~~~l~f~~~~gv~~n~~G~V~~d~~~~T~ipGvyAaGDi~~Gp~  400 (491)
T PLN02852        321 LEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKSLPVDGLPFDHKRGVVPNVHGRVLSSASGADTEPGLYVVGWLKRGPT  400 (491)
T ss_pred             cCCCcccCCcccCCCCCEEEEECCEEEEeecCCCCCCCCCccccCcCeeECCCceEEeCCCCccCCCCEEEeeeEecCCC
Confidence                          12  259999999999997  55543 221  2333 57899999888999999999999998765


Q ss_pred             cccCcccccccHHHHHHHHHHHHHHHhccC
Q 013952          303 KLYREMRRVEHVDHARKSAEQAVKTIMATE  332 (433)
Q Consensus       303 ~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~  332 (433)
                               ..+..++.+|+.++.+|....
T Consensus       401 ---------gvI~t~~~dA~~ta~~i~~d~  421 (491)
T PLN02852        401 ---------GIIGTNLTCAEETVASIAEDL  421 (491)
T ss_pred             ---------CeeeecHhhHHHHHHHHHHHH
Confidence                     356667788888898888654

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=99.95  E-value=1.7e-26  Score=230.74  Aligned_cols=287  Identities=21%  Similarity=0.296  Sum_probs=191.0

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      .++|+|||+||+||++|..|++.|++   |+++|+....      . +++.    ..++.+...  ........+.+.+.
T Consensus       137 g~~V~VIGaGpaGL~aA~~l~~~G~~---V~v~e~~~~~------G-G~l~----~gip~~~~~--~~~~~~~l~~~~~~  200 (564)
T PRK12771        137 GKRVAVIGGGPAGLSAAYHLRRMGHA---VTIFEAGPKL------G-GMMR----YGIPAYRLP--REVLDAEIQRILDL  200 (564)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCCC------C-Ceee----ecCCCccCC--HHHHHHHHHHHHHC
Confidence            46899999999999999999999986   9999988111      1 1111    112222110  00011223456678


Q ss_pred             CcEEEeCceE-EEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCC
Q 013952           85 GIELILSTEI-VRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNG  163 (433)
Q Consensus        85 ~v~~~~~~~v-~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~  163 (433)
                      |+++..+..+ ..+..+.        ....||++++|||+.+..+.  .+++.+..+++..-.+..  ..........++
T Consensus       201 Gv~~~~~~~~~~~~~~~~--------~~~~~D~Vi~AtG~~~~~~~--~i~g~~~~gv~~~~~~l~--~~~~~~~~~~gk  268 (564)
T PRK12771        201 GVEVRLGVRVGEDITLEQ--------LEGEFDAVFVAIGAQLGKRL--PIPGEDAAGVLDAVDFLR--AVGEGEPPFLGK  268 (564)
T ss_pred             CCEEEeCCEECCcCCHHH--------HHhhCCEEEEeeCCCCCCcC--CCCCCccCCcEEHHHHHH--HhhccCCcCCCC
Confidence            9998887554 2211110        12358999999998753222  156665555554322211  111000122478


Q ss_pred             cEEEECCCHHHHHHHHHHHhCC-CeEEEEccCCcc-CCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcE---
Q 013952          164 KAVVVGGGYIGLELSAALKINN-IDVSMVYPEPWC-MPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEV---  238 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g-~~V~li~~~~~~-~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~---  238 (433)
                      +++|+|+|.++++.+..+.+.+ .+|+++.+.+.. ++. ....    + +.+.+.||++++++.+.++..++++.+   
T Consensus       269 ~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~~~~-~~~~----~-~~a~~~GVki~~~~~~~~i~~~~~~~~~v~  342 (564)
T PRK12771        269 RVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTREDMPA-HDEE----I-EEALREGVEINWLRTPVEIEGDENGATGLR  342 (564)
T ss_pred             CEEEECChHHHHHHHHHHHHcCCCEEEEEEecCcccCCC-CHHH----H-HHHHHcCCEEEecCCcEEEEcCCCCEEEEE
Confidence            9999999999999999998888 678988876542 221 2222    2 234568999999999999976334432   


Q ss_pred             -EEEEe----CCC---------cEEECCEEEEcccCccChhhhhc--ccccCCCcEEeCC-CCCCCCCCeEEcCcccccc
Q 013952          239 -KEVKL----KDG---------RTLEADIVVVGVGGRPLISLFKG--QVAENKGGIETDD-FFKTSADDVYAVGDVATFP  301 (433)
Q Consensus       239 -~~v~~----~~g---------~~i~~d~vi~a~G~~p~~~~~~~--~~~~~~g~i~vd~-~~~t~~~~vfa~Gd~~~~~  301 (433)
                       ..+..    .+|         .++++|.||+|+|+.|+..++..  ++..++|+|.+|+ +++|+.|+|||+|||+..+
T Consensus       343 ~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~~~~~~~~gl~~~~G~i~vd~~~~~ts~~~Vfa~GD~~~g~  422 (564)
T PRK12771        343 VITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDSAGLESVPGVEVGRGVVQVDPNFMMTGRPGVFAGGDMVPGP  422 (564)
T ss_pred             EEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCCchhhhhhccCcccCCCCEEeCCCCccCCCCCEEeccCcCCCc
Confidence             11221    112         37999999999999999887763  4444678899998 7899999999999998754


Q ss_pred             ccccCcccccccHHHHHHHHHHHHHHHhccCCCC
Q 013952          302 MKLYREMRRVEHVDHARKSAEQAVKTIMATEGGK  335 (433)
Q Consensus       302 ~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~  335 (433)
                                .++..|+.+|+.||.+|...+.+.
T Consensus       423 ----------~~v~~Av~~G~~aA~~i~~~L~g~  446 (564)
T PRK12771        423 ----------RTVTTAIGHGKKAARNIDAFLGGE  446 (564)
T ss_pred             ----------hHHHHHHHHHHHHHHHHHHHHcCC
Confidence                      568889999999999997766543

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=99.94  E-value=7.6e-25  Score=211.50  Aligned_cols=286  Identities=17%  Similarity=0.176  Sum_probs=181.4

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-C--CCCCC-CCc---------------cccc--cCCCCC---
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-V--APYER-PAL---------------SKAY--LFPEGT---   59 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~--~~~~~-~~~---------------~~~~--~~~~~~---   59 (433)
                      ..++|+|||||++||+||++|++.|++   |+++|++ .  ..|.. +..               +..+  +....+   
T Consensus         9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~---v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~   85 (461)
T PLN02172          9 NSQHVAVIGAGAAGLVAARELRREGHT---VVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPREC   85 (461)
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhcCCe---EEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhh
Confidence            358999999999999999999999987   9999998 1  11211 000               0000  000000   


Q ss_pred             CCCCCcccc--------------cCCCCCCCCHhHHHhCCcE--EEeCceEEEEECCCCE--EEeCCC--c--EEecceE
Q 013952           60 ARLPGFHVC--------------VGSGGERLLPEWYKEKGIE--LILSTEIVRADIASKT--LLSATG--L--IFKYQIL  117 (433)
Q Consensus        60 ~~~~~~~~~--------------~~~~~~~~~~~~~~~~~v~--~~~~~~v~~i~~~~~~--v~~~~~--~--~~~~d~l  117 (433)
                      ..++.++..              ...+..+.+.++.+.+++.  +.++++|..+++.++.  |.+.++  .  +..||+|
T Consensus        86 m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~V  165 (461)
T PLN02172         86 MGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAV  165 (461)
T ss_pred             ccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEE
Confidence            001111110              0011122344455567877  7888999999876553  444322  2  4679999


Q ss_pred             EEccC--CCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Q 013952          118 VIATG--STVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP  195 (433)
Q Consensus       118 vlAtG--~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~  195 (433)
                      |+|||  +.|+.|+++|+..+. ..+++..++.+...+       ++|+|+|||+|.+|+|+|..|...+.+|+++.+.+
T Consensus       166 IvAtG~~~~P~~P~ipG~~~f~-G~~iHs~~yr~~~~~-------~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~  237 (461)
T PLN02172        166 VVCNGHYTEPNVAHIPGIKSWP-GKQIHSHNYRVPDPF-------KNEVVVVIGNFASGADISRDIAKVAKEVHIASRAS  237 (461)
T ss_pred             EEeccCCCCCcCCCCCCcccCC-ceEEEecccCCcccc-------CCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence            99999  678888743332222 234444444443332       68999999999999999999999999999999865


Q ss_pred             ccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhhhcccccCC
Q 013952          196 WCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENK  275 (433)
Q Consensus       196 ~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~~~~~  275 (433)
                      ....          . ..+......++.+..|..+..  ++   +|.+.||+.+++|.||+|||++++..++..     .
T Consensus       238 ~~~~----------~-~~~~~~~~~v~~~~~I~~~~~--~g---~V~f~DG~~~~~D~Ii~~TGy~~~~pfL~~-----~  296 (461)
T PLN02172        238 ESDT----------Y-EKLPVPQNNLWMHSEIDTAHE--DG---SIVFKNGKVVYADTIVHCTGYKYHFPFLET-----N  296 (461)
T ss_pred             cccc----------c-ccCcCCCCceEECCcccceec--CC---eEEECCCCCccCCEEEECCcCCccccccCc-----c
Confidence            3211          0 011122344556667776653  44   488999999999999999999999988753     2


Q ss_pred             CcEEeCCCC------C---CC-CCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccC
Q 013952          276 GGIETDDFF------K---TS-ADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE  332 (433)
Q Consensus       276 g~i~vd~~~------~---t~-~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~  332 (433)
                      +.+.+|+..      +   .. .|++..+|=....           ..+..+-.|++.+|+-+.+..
T Consensus       297 ~~i~v~~~~v~~Ly~~~f~~~~~p~LafiG~~~~~-----------~~f~~~E~Qa~~~a~v~sG~~  352 (461)
T PLN02172        297 GYMRIDENRVEPLYKHVFPPALAPGLSFIGLPAMG-----------IQFVMFEIQSKWVAAVLSGRV  352 (461)
T ss_pred             cceeeCCCcchhhHHhhcCCCCCCcEEEEeccccc-----------cCchhHHHHHHHHHHHHcCCC
Confidence            345454331      1   13 4899999954322           223445678888888776653

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=99.90  E-value=1.3e-22  Score=175.64  Aligned_cols=304  Identities=18%  Similarity=0.230  Sum_probs=209.9

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCc---cccccCCCCCCCCCCcccccCCCCCCCCHhH
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPAL---SKAYLFPEGTARLPGFHVCVGSGGERLLPEW   80 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (433)
                      ++++|+|||||.+|++.|..+.+. +..++|.|+|+...+|.+|..   .+++..-....               ....-
T Consensus        38 ~h~kvLVvGGGsgGi~~A~k~~rk-l~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~sr---------------r~~a~  101 (446)
T KOG3851|consen   38 KHFKVLVVGGGSGGIGMAAKFYRK-LGSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSR---------------RKQAS  101 (446)
T ss_pred             cceEEEEEcCCcchhHHHHHHHhh-cCCCceEEecchhhcccCcceEEeccchhhhhhcc---------------Ccccc
Confidence            468999999999999999888764 346779999999666666643   22221111100               01111


Q ss_pred             HHhCCcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCCC-CCCCCCCEEEecCHHHHHHHHHHHHh
Q 013952           81 YKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGV-EGADAKNIFYLREIDDADKLVEAIKA  159 (433)
Q Consensus        81 ~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~-~g~~~~~v~~~~~~~~~~~~~~~~~~  159 (433)
                      +-..+..++. ..|..+++++++|.+.+|+++.||++|||+|-+-..-.+.|+ +..+.++|.+..+....++..+.+..
T Consensus       102 liP~~a~wi~-ekv~~f~P~~N~v~t~gg~eIsYdylviA~Giql~y~~IkGl~Eal~tP~VcSnYSpkyvdk~y~~~~~  180 (446)
T KOG3851|consen  102 LIPKGATWIK-EKVKEFNPDKNTVVTRGGEEISYDYLVIAMGIQLDYGKIKGLVEALDTPGVCSNYSPKYVDKVYKELMN  180 (446)
T ss_pred             cccCCcHHHH-HHHHhcCCCcCeEEccCCcEEeeeeEeeeeeceeccchhcChHhhccCCCcccccChHHHHHHHHHHHh
Confidence            1123444444 478889999999999999999999999999987654443332 33567788888888888888888876


Q ss_pred             cCCCcEEE---------ECCCHHHHHHHH-HHHhCCC--eEEEE--ccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCC
Q 013952          160 KKNGKAVV---------VGGGYIGLELSA-ALKINNI--DVSMV--YPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGT  225 (433)
Q Consensus       160 ~~~~~v~V---------iG~G~~g~e~a~-~l~~~g~--~V~li--~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~  225 (433)
                      ++..+.+.         -|+-.-.+-+++ .+.+.|.  ++.++  +.-+.+..   -+..++++++..+++.|++....
T Consensus       181 fk~GNAIfTfPntpiKCAGAPQKi~yise~y~Rk~gvRd~a~iiy~Tsl~~iFg---Vk~Y~~AL~k~~~~rni~vn~kr  257 (446)
T KOG3851|consen  181 FKKGNAIFTFPNTPIKCAGAPQKIMYISESYFRKRGVRDNANIIYNTSLPTIFG---VKHYADALEKVIQERNITVNYKR  257 (446)
T ss_pred             ccCCceEEecCCCccccCCCchhhhhhhHHHHHHhCccccccEEEecCccceec---HHHHHHHHHHHHHhcceEeeecc
Confidence            65544433         244444555555 4556664  33443  33333322   36788999999999999999888


Q ss_pred             eEEEEEecCCCcEEEEEeCCC--cEEECCEEEEcccCccChhhhhcccccCCCcEEeCC-CCCC-CCCCeEEcCcccccc
Q 013952          226 VAVGFTTNADGEVKEVKLKDG--RTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDD-FFKT-SADDVYAVGDVATFP  301 (433)
Q Consensus       226 ~v~~i~~~~~g~~~~v~~~~g--~~i~~d~vi~a~G~~p~~~~~~~~~~~~~g~i~vd~-~~~t-~~~~vfa~Gd~~~~~  301 (433)
                      ...++..++...+.+..-+-|  ++++++++-+....++...+.+..+....|++.||. .+|+ ..||||++|||...|
T Consensus       258 nLiEV~~~~~~AvFe~L~kPG~t~ei~yslLHv~Ppms~pe~l~~s~~adktGfvdVD~~TlQs~kypNVFgiGDc~n~P  337 (446)
T KOG3851|consen  258 NLIEVRTNDRKAVFENLDKPGVTEEIEYSLLHVTPPMSTPEVLANSDLADKTGFVDVDQSTLQSKKYPNVFGIGDCMNLP  337 (446)
T ss_pred             ceEEEeccchhhHHHhcCCCCceeEEeeeeeeccCCCCChhhhhcCcccCcccceecChhhhccccCCCceeeccccCCC
Confidence            888887632221111111224  478999999999888877777777777789999995 4776 899999999999999


Q ss_pred             ccccCcccccccHHHHHHHHHHHHHHHhccCCCC
Q 013952          302 MKLYREMRRVEHVDHARKSAEQAVKTIMATEGGK  335 (433)
Q Consensus       302 ~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~  335 (433)
                      +.        ++++.+..|..++-.|+..-.+|+
T Consensus       338 ns--------KTaAAvaaq~~vv~~nl~~~m~g~  363 (446)
T KOG3851|consen  338 NS--------KTAAAVAAQSPVVDKNLTQVMQGK  363 (446)
T ss_pred             ch--------hhHHHHHhcCchhhhhHHHHhcCC
Confidence            76        666666678888888887655554

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=99.88  E-value=2e-22  Score=169.78  Aligned_cols=268  Identities=22%  Similarity=0.287  Sum_probs=174.0

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-C-CCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-V-APYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         7 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      +.+|||||.||.+||..|+..- +..+|+++..+ . ........-..++......+..      ...+...+..     
T Consensus         1 kfivvgggiagvscaeqla~~~-psa~illitass~vksvtn~~~i~~ylekfdv~eq~------~~elg~~f~~-----   68 (334)
T KOG2755|consen    1 KFIVVGGGIAGVSCAEQLAQLE-PSAEILLITASSFVKSVTNYQKIGQYLEKFDVKEQN------CHELGPDFRR-----   68 (334)
T ss_pred             CeEEEcCccccccHHHHHHhhC-CCCcEEEEeccHHHHHHhhHHHHHHHHHhcCccccc------hhhhcccHHH-----
Confidence            3689999999999999999975 45689999888 1 1111000011111111100000      0000111111     


Q ss_pred             CcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCCc
Q 013952           85 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGK  164 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  164 (433)
                         ++.  .|..++.+.+.+.+.+|..+.|++|+++||.+|...-    .+ -.+.+...++.+.++.++..+.  +.|.
T Consensus        69 ---~~~--~v~~~~s~ehci~t~~g~~~ky~kKOG~tg~kPklq~----E~-~n~~Iv~irDtDsaQllq~kl~--kaK~  136 (334)
T KOG2755|consen   69 ---FLN--DVVTWDSSEHCIHTQNGEKLKYFKLCLCTGYKPKLQV----EG-INPKIVGIRDTDSAQLLQCKLV--KAKI  136 (334)
T ss_pred             ---HHH--hhhhhccccceEEecCCceeeEEEEEEecCCCcceee----cC-CCceEEEEecCcHHHHHHHHHh--hcce
Confidence               111  2555667788899999999999999999999986542    33 2366778888888888888887  5789


Q ss_pred             EEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcC------------cEEEcCCe------
Q 013952          165 AVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKG------------IKIIKGTV------  226 (433)
Q Consensus       165 v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~G------------V~v~~~~~------  226 (433)
                      |.|+|.|-+++|++..+.  +.+|+|....+.+...++++.+...+...++..+            ++.+.+++      
T Consensus       137 VlilgnGgia~El~yElk--~~nv~w~ikd~~IsaTFfdpGaaef~~i~l~a~~s~~~iaiKh~q~iea~pk~~~n~vg~  214 (334)
T KOG2755|consen  137 VLILGNGGIAMELTYELK--ILNVTWKIKDEGISATFFDPGAAEFYDINLRADRSTRIIAIKHFQYIEAFPKCEENNVGP  214 (334)
T ss_pred             EEEEecCchhHHHHHHhh--cceeEEEecchhhhhcccCccHHHHhHhhhhcccccchhhhhhhhhhhhcCcccccCccc
Confidence            999999999999998885  5789999888888888888877666555441110            10111100      


Q ss_pred             ------------------------------EEEEEecCCCcEEEEEeCCC--cEEECCEEEEcccCccChhhh-hccccc
Q 013952          227 ------------------------------AVGFTTNADGEVKEVKLKDG--RTLEADIVVVGVGGRPLISLF-KGQVAE  273 (433)
Q Consensus       227 ------------------------------v~~i~~~~~g~~~~v~~~~g--~~i~~d~vi~a~G~~p~~~~~-~~~~~~  273 (433)
                                                    +..........+.......+  ..+.||.+++|+|..||.+++ ...+..
T Consensus       215 algpDw~s~~dl~g~~eseer~l~~l~~~~~~~~d~~d~~sv~~~~~ek~~~~qlt~d~ivSatgvtpn~e~~~~~~lq~  294 (334)
T KOG2755|consen  215 ALGPDWHSQIDLQGISESENRSLTYLRNCVITSTDTSDNLSVHYMDKEKMADNQLTCDFIVSATGVTPNSEWAMNKMLQI  294 (334)
T ss_pred             ccCcchhhhcccccchhhhhhhhHHhhhheeeeccchhhcccccccccccccceeeeeEEEeccccCcCceEEecChhhh
Confidence                                          00000000000000000111  368899999999999999955 334555


Q ss_pred             -CCCcEEeCCCCCCCCCCeEEcCccccc
Q 013952          274 -NKGGIETDDFFKTSADDVYAVGDVATF  300 (433)
Q Consensus       274 -~~g~i~vd~~~~t~~~~vfa~Gd~~~~  300 (433)
                       ++|++.||+.|+|+.|++||+||++..
T Consensus       295 ~edggikvdd~m~tslpdvFa~gDvctt  322 (334)
T KOG2755|consen  295 TEDGGIKVDDAMETSLPDVFAAGDVCTT  322 (334)
T ss_pred             ccccCeeehhhccccccceeeecceecc
Confidence             889999999999999999999998774

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=99.87  E-value=7.7e-22  Score=187.96  Aligned_cols=289  Identities=21%  Similarity=0.251  Sum_probs=199.6

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      -++|.|||||||||+||..|++.|+.   |+++|+.       ...++++.    ..+|.+..  ..+..+...+.+++.
T Consensus       123 g~~VaviGaGPAGl~~a~~L~~~G~~---Vtv~e~~-------~~~GGll~----yGIP~~kl--~k~i~d~~i~~l~~~  186 (457)
T COG0493         123 GKKVAVIGAGPAGLAAADDLSRAGHD---VTVFERV-------ALDGGLLL----YGIPDFKL--PKDILDRRLELLERS  186 (457)
T ss_pred             CCEEEEECCCchHhhhHHHHHhCCCe---EEEeCCc-------CCCceeEE----ecCchhhc--cchHHHHHHHHHHHc
Confidence            37899999999999999999999998   9998888       11222221    11333322  112234456778889


Q ss_pred             CcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCC-ccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHH-----
Q 013952           85 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST-VLRLTDFGVEGADAKNIFYLREIDDADKLVEAIK-----  158 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~-~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~-----  158 (433)
                      |++|+.++++-      +.++.+.- .-.||+++++||+. |+..+   ++|.+.++++...++.........-.     
T Consensus       187 Gv~~~~~~~vG------~~it~~~L-~~e~Dav~l~~G~~~~~~l~---i~g~d~~gv~~A~dfL~~~~~~~~~~~~~~~  256 (457)
T COG0493         187 GVEFKLNVRVG------RDITLEEL-LKEYDAVFLATGAGKPRPLD---IPGEDAKGVAFALDFLTRLNKEVLGDFAEDR  256 (457)
T ss_pred             CeEEEEcceEC------CcCCHHHH-HHhhCEEEEeccccCCCCCC---CCCcCCCcchHHHHHHHHHHHHHhccccccc
Confidence            99999986652      22322221 23569999999974 44444   78887778876544333222111110     


Q ss_pred             h--cCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccCCcc-CCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecC
Q 013952          159 A--KKNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWC-MPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNA  234 (433)
Q Consensus       159 ~--~~~~~v~ViG~G~~g~e~a~~l~~~g~-~V~li~~~~~~-~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~  234 (433)
                      .  ..+++++|||+|.++++++....+.|. +|+.+.+...- -...++..-.....+...++|+...+.....++..++
T Consensus       257 ~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~eeg~~~~~~~~~~~~~~~e  336 (457)
T COG0493         257 TPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERLPFVQPKAFIGNE  336 (457)
T ss_pred             CCCCCCCeEEEECCCCCHHHHHHHHhhcCCeEEEEeccccccccCCcccccchhhhhhhhhhcCCcccccCCceeEeecC
Confidence            0  123899999999999999999999997 67777532221 1111222334455667788899999999999998877


Q ss_pred             CCcEEEEEeCC-------------------C--cEEECCEEEEcccCccChhhh---hccccc-CCCcEEeCCCC-CCCC
Q 013952          235 DGEVKEVKLKD-------------------G--RTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFF-KTSA  288 (433)
Q Consensus       235 ~g~~~~v~~~~-------------------g--~~i~~d~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~-~t~~  288 (433)
                      +|++..+.+..                   |  ..+++|.|+.|+|+.++....   ...+.. ..|.+.+|+.+ +|+.
T Consensus       337 ~GrV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ts~  416 (457)
T COG0493         337 GGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQTSI  416 (457)
T ss_pred             CCcEeeeecccccccCcccccccccCccccCceEEehHHHHHHHhccCCCcccccccccccccCCCCceecccccccccC
Confidence            88877654421                   1  258899999999988875432   223444 67899999998 9999


Q ss_pred             CCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHh
Q 013952          289 DDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIM  329 (433)
Q Consensus       289 ~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~  329 (433)
                      |++||.||+..+.          ..+..|+.+|+.+|+.|.
T Consensus       417 ~~vfa~gD~~~g~----------~~vv~ai~eGr~aak~i~  447 (457)
T COG0493         417 PGVFAGGDAVRGA----------ALVVWAIAEGREAAKAID  447 (457)
T ss_pred             CCeeeCceeccch----------hhhhhHHhhchHHHHhhh
Confidence            9999999999864          567889999999999886

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=99.86  E-value=7.9e-21  Score=185.99  Aligned_cols=298  Identities=16%  Similarity=0.234  Sum_probs=154.7

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC---CCCCCCC---CccccccCC-------CCCCCCCCcccccCC-
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE---VAPYERP---ALSKAYLFP-------EGTARLPGFHVCVGS-   71 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~---~~~~~~~---~~~~~~~~~-------~~~~~~~~~~~~~~~-   71 (433)
                      ++|+|||||++||++|+.|.+.|++   ++++|++   ...|...   .....-.+.       .....+++++..... 
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~g~~---~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p   78 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEEGLE---VTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYP   78 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHTT-E---EEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCS
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCC---CeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCC
Confidence            6899999999999999999999987   9999999   2222100   000000000       001112222221110 


Q ss_pred             ------CCCCCCHhHHHhCCc--EEEeCceEEEEECCC-------CEEEeCC-C--cEEecceEEEccCC--CccccCCC
Q 013952           72 ------GGERLLPEWYKEKGI--ELILSTEIVRADIAS-------KTLLSAT-G--LIFKYQILVIATGS--TVLRLTDF  131 (433)
Q Consensus        72 ------~~~~~~~~~~~~~~v--~~~~~~~v~~i~~~~-------~~v~~~~-~--~~~~~d~lvlAtG~--~~~~~~~~  131 (433)
                            +..+.+..+.+++++  .+.++++|.++.+..       -.|++.+ +  ++-.||+||+|||.  .|..|. +
T Consensus        79 ~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~-~  157 (531)
T PF00743_consen   79 DFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPE-P  157 (531)
T ss_dssp             SSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB----
T ss_pred             CCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCCh-h
Confidence                  112234445555665  477888999887532       2355543 3  24579999999995  576664 1


Q ss_pred             CCCCCC--CCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc-CCCCC------
Q 013952          132 GVEGAD--AKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC-MPRLF------  202 (433)
Q Consensus       132 ~~~g~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~-~~~~~------  202 (433)
                      .+||.+  ...++++.++.+...+       ++|+|+|||+|.+|+++|..++....+|++..|.+.+ +++..      
T Consensus       158 ~~~G~e~F~G~i~HS~~yr~~~~f-------~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr~~~~G~P~  230 (531)
T PF00743_consen  158 SFPGLEKFKGEIIHSKDYRDPEPF-------KGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPRYWDNGYPF  230 (531)
T ss_dssp             --CTGGGHCSEEEEGGG--TGGGG-------TTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC----------------
T ss_pred             hhhhhhcCCeeEEccccCcChhhc-------CCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecccccccccccccccc
Confidence            134432  3467887777665443       7999999999999999999999999999988776432 12111      


Q ss_pred             ----------------CHHHHHHHH-H--------------------------------HHHhcCcEEEcCCeEEEEEec
Q 013952          203 ----------------TADIAAFYE-G--------------------------------YYANKGIKIIKGTVAVGFTTN  233 (433)
Q Consensus       203 ----------------~~~~~~~l~-~--------------------------------~l~~~GV~v~~~~~v~~i~~~  233 (433)
                                      +..+.+.+. +                                .+....|++.  ..|.++.. 
T Consensus       231 D~~~~~R~~~~l~~~lp~~~~~~~~~~~l~~~~~~~~~gl~p~~~~~~~~~~ind~l~~~i~~G~i~vk--~~I~~~~~-  307 (531)
T PF00743_consen  231 DMVFSTRFSSFLQKNLPESLSNWLLEKKLNKRFDHENYGLKPKHRFFSQHPTINDELPNRIRSGRIKVK--PDIKRFTE-  307 (531)
T ss_dssp             --------------------------------------------------------------------E--E-EEEE-S-
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccccccc-
Confidence                            111111110 0                                1111122222  12333332 


Q ss_pred             CCCcEEEEEeCCCcEE-ECCEEEEcccCccChhhhhccccc-CCCcEEeCCCC---CCCCCCeEEcCccccccccccCcc
Q 013952          234 ADGEVKEVKLKDGRTL-EADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFF---KTSADDVYAVGDVATFPMKLYREM  308 (433)
Q Consensus       234 ~~g~~~~v~~~~g~~i-~~d~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~---~t~~~~vfa~Gd~~~~~~~~~~~~  308 (433)
                           .+|.+.||..+ ++|.||+|||++....+++..+.. .++.+..-.++   ....|++..+|=+....       
T Consensus       308 -----~~v~F~DGs~~e~vD~II~~TGY~~~fpFL~~~~~~~~~~~~~LYk~vfp~~~~~ptLafIG~~~~~g-------  375 (531)
T PF00743_consen  308 -----NSVIFEDGSTEEDVDVIIFCTGYKFSFPFLDESLIKVDDNRVRLYKHVFPPNLDHPTLAFIGLVQPFG-------  375 (531)
T ss_dssp             -----SEEEETTSEEEEE-SEEEE---EE---TTB-TTTT-S-SSSSSEETTTEETETTSTTEEESS-SBSSS-------
T ss_pred             -----cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-------
Confidence                 35778999765 699999999999988888655332 33322222222   12458899999653211       


Q ss_pred             cccccHHHHHHHHHHHHHHHhccC
Q 013952          309 RRVEHVDHARKSAEQAVKTIMATE  332 (433)
Q Consensus       309 ~~~~~~~~A~~~g~~aa~~i~~~~  332 (433)
                         .....+..|++.+|+-+.+..
T Consensus       376 ---~~fp~~ElQArw~a~v~sG~~  396 (531)
T PF00743_consen  376 ---SIFPIFELQARWAARVFSGRV  396 (531)
T ss_dssp             ----HHHHHHHHHHHHHHHHTTSS
T ss_pred             ---ccccccccccccccccccccc
Confidence               234556789999888776653

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=99.85  E-value=6.4e-20  Score=185.07  Aligned_cols=281  Identities=13%  Similarity=0.136  Sum_probs=162.3

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-C--CCCC--CCCccccccCCCCCCCC---CCcccccCCCCCCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-V--APYE--RPALSKAYLFPEGTARL---PGFHVCVGSGGERL   76 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~--~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~   76 (433)
                      .++|+||||||||++||++|++.|++   |+++|+. .  .++.  ++......+.+.-....   ++-....+.. ...
T Consensus       383 gKKVaVVGaGPAGLsAA~~La~~Gh~---Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~yGIp-~R~  458 (1028)
T PRK06567        383 NYNILVTGLGPAGFSLSYYLLRSGHN---VTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEYGIT-VRW  458 (1028)
T ss_pred             CCeEEEECcCHHHHHHHHHHHhCCCe---EEEEccccccccccccccccchhhhhccchhhhccccCCcccccCcc-ccc
Confidence            57999999999999999999999998   9999986 2  1111  00000000000000000   0000000000 111


Q ss_pred             CH------hHHHhC--CcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCC-CccccCCCCCCCCCCCCEEEecCH
Q 013952           77 LP------EWYKEK--GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGS-TVLRLTDFGVEGADAKNIFYLREI  147 (433)
Q Consensus        77 ~~------~~~~~~--~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~-~~~~~~~~~~~g~~~~~v~~~~~~  147 (433)
                      ..      ..+.+.  ++.++.+..+      +..++.++-....||+|+||||+ .|+.++   +||.+..++++..++
T Consensus       459 ~k~~l~~i~~il~~g~~v~~~~gv~l------G~dit~edl~~~gyDAV~IATGA~kpr~L~---IPGeda~GV~sA~Df  529 (1028)
T PRK06567        459 DKNNLDILRLILERNNNFKYYDGVAL------DFNITKEQAFDLGFDHIAFCIGAGQPKVLD---IENFEAKGVKTASDF  529 (1028)
T ss_pred             hHHHHHHHHHHHhcCCceEEECCeEE------CccCCHHHHhhcCCCEEEEeCCCCCCCCCC---CCCccCCCeEEHHHH
Confidence            11      112223  3555555331      22233322234679999999999 688777   688777888875553


Q ss_pred             HHHHHHHHHH-----Hh-cCCCcEEEECCCHHHHHHHHHHHh--------------------------------------
Q 013952          148 DDADKLVEAI-----KA-KKNGKAVVVGGGYIGLELSAALKI--------------------------------------  183 (433)
Q Consensus       148 ~~~~~~~~~~-----~~-~~~~~v~ViG~G~~g~e~a~~l~~--------------------------------------  183 (433)
                      ..........     .. ..+++|+|||||.+|+|+|.....                                      
T Consensus       530 L~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~~~~~~~d~eia~~f~~h~r~~g~  609 (1028)
T PRK06567        530 LMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIEKDLTEEDKEIAEEFIAHAKLFKE  609 (1028)
T ss_pred             HHHHhhcccccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhhhhcccccHHHHHHHHHHHHhhcc
Confidence            2221111010     00 025799999999999999983322                                      


Q ss_pred             -------------CCCeEEEEccCCcc-CCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC-----
Q 013952          184 -------------NNIDVSMVYPEPWC-MPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK-----  244 (433)
Q Consensus       184 -------------~g~~V~li~~~~~~-~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~-----  244 (433)
                                   .|. |+++.|...- +|. . .-..+.+. ...+.||+++++..+.++..+++|++.++++.     
T Consensus       610 ~~~~~~v~~l~~~~G~-VtIvYRr~~~empA-~-~~~~eEv~-~A~eEGV~f~~~~~P~~i~~d~~g~v~~l~~~~~~~~  685 (1028)
T PRK06567        610 AKNNEELRKVFNKLGG-ATVYYRGRLQDSPA-Y-KLNHEELI-YALALGVDFKENMQPLRINVDKYGHVESVEFENRNRH  685 (1028)
T ss_pred             hhccchhhhhhccCCc-eEEEecCChhhCCC-C-CCCHHHHH-HHHHcCcEEEecCCcEEEEecCCCeEEEEEEEEEecc
Confidence                         122 7777765432 121 0 00012222 34667999999999999987556777766552     


Q ss_pred             ---------C----------------CcEEECCEEEEcccCccChhhhhcccccCCCcEEeCCCCCCCCCCeEEcCcccc
Q 013952          245 ---------D----------------GRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVAT  299 (433)
Q Consensus       245 ---------~----------------g~~i~~d~vi~a~G~~p~~~~~~~~~~~~~g~i~vd~~~~t~~~~vfa~Gd~~~  299 (433)
                               +                ..+++||.||+|+|..||+.+..           .+..+-++.+++|+      
T Consensus       686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~~~~~~~~-----------~~~s~~~d~~~~f~------  748 (1028)
T PRK06567        686 CEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIENNTQFDE-----------DKYSYFGDCNPKYS------  748 (1028)
T ss_pred             cccccccccccccccCCcCcccCCCccccccCCEEEEecccCCcccccc-----------cccccccCCCCccc------
Confidence                     1                14699999999999999987631           01112223344443      


Q ss_pred             ccccccCcccccccHHHHHHHHHHHHHHHhcc
Q 013952          300 FPMKLYREMRRVEHVDHARKSAEQAVKTIMAT  331 (433)
Q Consensus       300 ~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~  331 (433)
                                  .++..|+.+|+.++.+|...
T Consensus       749 ------------Gtvv~A~as~k~~~~~i~~~  768 (1028)
T PRK06567        749 ------------GSVVKALASSKEGYDAINKK  768 (1028)
T ss_pred             ------------cHHHHHHHHHHhHHHHHHHH
Confidence                        35777899999999998543

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=99.82  E-value=1.4e-21  Score=170.09  Aligned_cols=185  Identities=34%  Similarity=0.475  Sum_probs=122.6

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCcccccCCCCCC--CCHhHHHh
Q 013952            7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVCVGSGGER--LLPEWYKE   83 (433)
Q Consensus         7 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~   83 (433)
                      ||+|||||+||++||.+|++.+.+   ++++++. ..++....+....+.......    .. .. . ..  ...+.+..
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~---v~ii~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~-~-~~~~~~~~~~~~   70 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAK---VLIIEKSPGTPYNSGCIPSPLLVEIAPHR----HE-FL-P-ARLFKLVDQLKN   70 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSE---EEEESSSSHHHHHHSHHHHHHHHHHHHHH----HH-HH-H-HHHGHHHHHHHH
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCe---EEEEecccccccccccccccccccccccc----cc-cc-c-cccccccccccc
Confidence            799999999999999999988877   9999887 322222222111110000000    00 00 0 00  22333467


Q ss_pred             CCcEEEeCceEEEEECCCCEE----------EeCCCcEEecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHH
Q 013952           84 KGIELILSTEIVRADIASKTL----------LSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKL  153 (433)
Q Consensus        84 ~~v~~~~~~~v~~i~~~~~~v----------~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~  153 (433)
                      .++++..+..+.+++...+.+          ...++.++.||+||+|||+.|..|+   +||.+  ..+......++..+
T Consensus        71 ~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~---i~g~~--~~~~~~~~~~~~~~  145 (201)
T PF07992_consen   71 RGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPN---IPGEE--VAYFLRGVDDAQRF  145 (201)
T ss_dssp             HTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEES---STTTT--TECBTTSEEHHHHH
T ss_pred             ceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccccceee---cCCCc--cccccccccccccc
Confidence            899998888999999888742          2234568999999999999988886   56652  22333455566666


Q ss_pred             HHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEec
Q 013952          154 VEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN  233 (433)
Q Consensus       154 ~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~  233 (433)
                      ...+..  +++++|||                                                                
T Consensus       146 ~~~~~~--~~~v~VvG----------------------------------------------------------------  159 (201)
T PF07992_consen  146 LELLES--PKRVAVVG----------------------------------------------------------------  159 (201)
T ss_dssp             HTHSST--TSEEEEES----------------------------------------------------------------
T ss_pred             cccccc--cccccccc----------------------------------------------------------------
Confidence            655543  45999999                                                                


Q ss_pred             CCCcEEEEEeCCCcEEECCEEEEcccCccChhh-hhccccc-CCCcEEeCCCCCCCCCCeEEcCcccccc
Q 013952          234 ADGEVKEVKLKDGRTLEADIVVVGVGGRPLISL-FKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFP  301 (433)
Q Consensus       234 ~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~-~~~~~~~-~~g~i~vd~~~~t~~~~vfa~Gd~~~~~  301 (433)
                                                   ...+ -..++.. ++|++.||+++||+.|||||+|||++.+
T Consensus       160 -----------------------------~~~l~~~~~~~~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~  200 (201)
T PF07992_consen  160 -----------------------------TEFLAEKLGVELDENGFIKVDENLQTSVPGIYAAGDCAGIY  200 (201)
T ss_dssp             -----------------------------TTTSTHHTTSTBTTTSSBEEBTTSBBSSTTEEE-GGGBEES
T ss_pred             -----------------------------ccccccccccccccccccccccccccccccccccccccccC
Confidence                                         1222 2345665 6788999999999999999999999875

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=99.79  E-value=2.4e-19  Score=156.24  Aligned_cols=176  Identities=23%  Similarity=0.327  Sum_probs=102.3

Q ss_pred             EEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-C--CCCCCCCccccccCCCC---CCCCCCc---ccc-----------
Q 013952            9 VILGGGVSAGYAAREFAKQGVKPGELAIISKE-V--APYERPALSKAYLFPEG---TARLPGF---HVC-----------   68 (433)
Q Consensus         9 vIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~--~~~~~~~~~~~~~~~~~---~~~~~~~---~~~-----------   68 (433)
                      +||||||+||++|.+|++.|.++  |+|+|++ .  ..|.+......+..+..   ...++.+   ...           
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~--v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDP--VVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDF   78 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT-----EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSS
T ss_pred             CEECcCHHHHHHHHHHHhCCCCc--EEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCccc
Confidence            79999999999999999998753  9999998 2  11111000000111110   0111110   000           


Q ss_pred             -cCCCCCCCCHhHHHhCCcEEEeCceEEEEECCCC--EEEeCCCcEEecceEEEccCC--CccccCCCCCCC-CCCCCEE
Q 013952           69 -VGSGGERLLPEWYKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGS--TVLRLTDFGVEG-ADAKNIF  142 (433)
Q Consensus        69 -~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~--~~~~~~~~~~~g-~~~~~v~  142 (433)
                       ......+.+..+.++.++++..++.|.++...+.  .|++.+++++.+|+||+|||.  .|+.|+   +++ .. ...+
T Consensus        79 ~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p~---~~g~~~-~~~~  154 (203)
T PF13738_consen   79 PSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPRIPD---IPGSAF-RPII  154 (203)
T ss_dssp             EBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB---S----TTGGC-SEEE
T ss_pred             CCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCCccc---cccccc-cceE
Confidence             0001122344556678999999999999987654  678888888999999999995  677666   566 33 3556


Q ss_pred             EecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc
Q 013952          143 YLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC  197 (433)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~  197 (433)
                      +..+..+...       .++++|+|||+|.+|++++..|.+.|.+|+++.|.+.+
T Consensus       155 h~~~~~~~~~-------~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~~  202 (203)
T PF13738_consen  155 HSADWRDPED-------FKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPIW  202 (203)
T ss_dssp             EGGG-STTGG-------CTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS---
T ss_pred             ehhhcCChhh-------cCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCCC
Confidence            6554433322       26899999999999999999999999999999998754

...

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.78  E-value=1.1e-16  Score=144.72  Aligned_cols=289  Identities=13%  Similarity=0.188  Sum_probs=180.2

Q ss_pred             CCCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCc-ccccc---------CCCCCCC--------
Q 013952            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPAL-SKAYL---------FPEGTAR--------   61 (433)
Q Consensus         1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~-~~~~~---------~~~~~~~--------   61 (433)
                      ||++.+|+|.||-||+.|+.|..|.+.+.  .+...+|+. ...|...++ .+.-+         ....+..        
T Consensus         1 ~~~~~~DliGIG~GPfNL~LA~ll~e~~~--~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL   78 (436)
T COG3486           1 MMAEVLDLIGIGIGPFNLSLAALLEEHSG--LKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYL   78 (436)
T ss_pred             CCCcceeeEEEccCchHHHHHHHhccccC--cceEEEecCCCCCcCCCcccCCccccccchhhhccccCCCCchHHHHHH
Confidence            88889999999999999999999998752  238899998 444443322 11100         0000000        


Q ss_pred             -----CCCccc----ccCCCCCCCCHhHHHhCCcEEEeCceEEEE---ECCCC---EEEeCCCcEEecceEEEccCCCcc
Q 013952           62 -----LPGFHV----CVGSGGERLLPEWYKEKGIELILSTEIVRA---DIASK---TLLSATGLIFKYQILVIATGSTVL  126 (433)
Q Consensus        62 -----~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i---~~~~~---~v~~~~~~~~~~d~lvlAtG~~~~  126 (433)
                           +-.|-.    ......+.....|....--.+..+++|..|   +.+..   .+.+.++..++++.||+.+|.+|+
T Consensus        79 ~~h~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G~~P~  158 (436)
T COG3486          79 HEHGRLYEFLNYETFHIPRREYNDYCQWAASQLPSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVGTQPY  158 (436)
T ss_pred             HHcchHhhhhhhhcccccHHHHHHHHHHHHhhCCccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccCCCcC
Confidence                 000000    000011223334444545667788888844   43332   255667778999999999999999


Q ss_pred             ccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhC----CCeEEEEccCCccCCCC-
Q 013952          127 RLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKIN----NIDVSMVYPEPWCMPRL-  201 (433)
Q Consensus       127 ~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~----g~~V~li~~~~~~~~~~-  201 (433)
                      +|+.  +.....+.+|+..++..-   +..+.  +.++|.|||+|.+|.|+...|...    ..++.|+.|+..+.+.- 
T Consensus       159 IP~~--f~~l~~~~vfHss~~~~~---~~~~~--~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~p~d~  231 (436)
T COG3486         159 IPPC--FRSLIGERVFHSSEYLER---HPELL--QKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFLPMDY  231 (436)
T ss_pred             CChH--HhCcCccceeehHHHHHh---hHHhh--cCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCCcccc
Confidence            9986  455555678876544321   11111  344599999999999999988654    34588999987766531 


Q ss_pred             -------CCHHHHH-------------------------------HHHHHHH------hcCcEEEcCCeEEEEEecCCCc
Q 013952          202 -------FTADIAA-------------------------------FYEGYYA------NKGIKIIKGTVAVGFTTNADGE  237 (433)
Q Consensus       202 -------~~~~~~~-------------------------------~l~~~l~------~~GV~v~~~~~v~~i~~~~~g~  237 (433)
                             |.++..+                               .+....+      +..|.++.++.+..++...+|+
T Consensus       232 Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~  311 (436)
T COG3486         232 SKFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGR  311 (436)
T ss_pred             chhhhhhcCchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCce
Confidence                   1121111                               1111111      2468899999999999866664


Q ss_pred             EEEEEeCC-----CcEEECCEEEEcccCccChh-hh---hccccc-CCCcEEeCCCCCC-----CCCCeEEcCcccc
Q 013952          238 VKEVKLKD-----GRTLEADIVVVGVGGRPLIS-LF---KGQVAE-NKGGIETDDFFKT-----SADDVYAVGDVAT  299 (433)
Q Consensus       238 ~~~v~~~~-----g~~i~~d~vi~a~G~~p~~~-~~---~~~~~~-~~g~i~vd~~~~t-----~~~~vfa~Gd~~~  299 (433)
                       ..+.+..     .++++.|.||+|||++.... ++   ...+.. ++|...|+..++.     ..-.||+.|-+..
T Consensus       312 -~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvqn~e~h  387 (436)
T COG3486         312 -YRLTLRHHETGELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQNAELH  387 (436)
T ss_pred             -EEEEEeeccCCCceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEecCceeeecCCCCcceEEEeccccc
Confidence             4454432     25789999999999885444 44   233444 6788999987654     2247999986654

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=99.78  E-value=4.7e-18  Score=157.97  Aligned_cols=247  Identities=16%  Similarity=0.187  Sum_probs=133.6

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCc-cccccCCCCCCC-----CCCcccc-------cC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPAL-SKAYLFPEGTAR-----LPGFHVC-------VG   70 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~-------~~   70 (433)
                      .+|+|+||.||++|+.|..|.+.+  ..+++.+|+. ...|...++ .+.-+.......     -|..++.       .+
T Consensus         2 ~~D~igIG~GP~nLslA~~l~~~~--~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~   79 (341)
T PF13434_consen    2 IYDLIGIGFGPFNLSLAALLEEHG--DLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHG   79 (341)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHH-----EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT
T ss_pred             ceeEEEEeeCHHHHHHHHHhhhcC--CCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcC
Confidence            589999999999999999999886  2339999988 444443222 111111110011     0110000       00


Q ss_pred             --------C---CC---CCCCHhHHH-hCCcEEEeCceEEEEECCCC------EEEeC----CCcEEecceEEEccCCCc
Q 013952           71 --------S---GG---ERLLPEWYK-EKGIELILSTEIVRADIASK------TLLSA----TGLIFKYQILVIATGSTV  125 (433)
Q Consensus        71 --------~---~~---~~~~~~~~~-~~~v~~~~~~~v~~i~~~~~------~v~~~----~~~~~~~d~lvlAtG~~~  125 (433)
                              .   ..   +..+..|+. +..-.+..+.+|..|++...      .|.+.    +++++.+++||+|||..|
T Consensus        80 rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P  159 (341)
T PF13434_consen   80 RLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQP  159 (341)
T ss_dssp             -HHHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE
T ss_pred             ChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCC
Confidence                    0   00   011122222 23444778889999886542      45552    346899999999999999


Q ss_pred             cccCCCCCCCCC-CCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCC--eEEEEccCCccCCC--
Q 013952          126 LRLTDFGVEGAD-AKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNI--DVSMVYPEPWCMPR--  200 (433)
Q Consensus       126 ~~~~~~~~~g~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~--~V~li~~~~~~~~~--  200 (433)
                      ..|+.  +.... ...+++..++.....-     ....++|+|||||.+|.|++..|.+.+.  +|+|+.|.+.+.+.  
T Consensus       160 ~iP~~--~~~~~~~~~v~Hss~~~~~~~~-----~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~  232 (341)
T PF13434_consen  160 RIPEW--FQDLPGSPRVFHSSEYLSRIDQ-----SLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDD  232 (341)
T ss_dssp             ---GG--GGGGTT-TTEEEGGGHHHHHT----------EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB---
T ss_pred             CCCcc--hhhcCCCCCEEEehHhhhcccc-----ccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCcc
Confidence            98875  34433 3789987765443211     1257899999999999999999988874  89999998765432  


Q ss_pred             ------CCCHH-------------------------------HHHHHHH-----HH-HhcCcEEEcCCeEEEEEecCCCc
Q 013952          201 ------LFTAD-------------------------------IAAFYEG-----YY-ANKGIKIIKGTVAVGFTTNADGE  237 (433)
Q Consensus       201 ------~~~~~-------------------------------~~~~l~~-----~l-~~~GV~v~~~~~v~~i~~~~~g~  237 (433)
                            .++++                               +.+.+.+     .+ .+..+.++.+++|++++..+++.
T Consensus       233 s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~  312 (341)
T PF13434_consen  233 SPFVNEIFSPEYVDYFYSLPDEERRELLREQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGG  312 (341)
T ss_dssp             -CCHHGGGSHHHHHHHHTS-HHHHHHHHHHTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SS
T ss_pred             ccchhhhcCchhhhhhhcCCHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCE
Confidence                  12222                               1111111     11 23357899999999998865433


Q ss_pred             EEEEEeCC-----CcEEECCEEEEcccCc
Q 013952          238 VKEVKLKD-----GRTLEADIVVVGVGGR  261 (433)
Q Consensus       238 ~~~v~~~~-----g~~i~~d~vi~a~G~~  261 (433)
                       ..+.+.+     ..++++|.||+|||++
T Consensus       313 -~~l~~~~~~~~~~~~~~~D~VilATGy~  340 (341)
T PF13434_consen  313 -VRLTLRHRQTGEEETLEVDAVILATGYR  340 (341)
T ss_dssp             -EEEEEEETTT--EEEEEESEEEE---EE
T ss_pred             -EEEEEEECCCCCeEEEecCEEEEcCCcc
Confidence             3555543     2478999999999975

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=99.77  E-value=1.3e-17  Score=160.69  Aligned_cols=186  Identities=17%  Similarity=0.234  Sum_probs=120.3

Q ss_pred             CCCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC---CCCCCCCCc-cccccCCCCCCCCCCcccc------cC
Q 013952            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE---VAPYERPAL-SKAYLFPEGTARLPGFHVC------VG   70 (433)
Q Consensus         1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~~   70 (433)
                      |++.++||+|||||++||++|++|+++|.+.  ++|+|++   ...|...+- +-.+..+.....++.++..      ..
T Consensus         4 ~~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~--~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~   81 (443)
T COG2072           4 GVATHTDVAIIGAGQSGLAAAYALKQAGVPD--FVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPF   81 (443)
T ss_pred             CcCCcccEEEECCCHHHHHHHHHHHHcCCCc--EEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCc
Confidence            4566799999999999999999999999765  9999999   222222111 1111111112233333331      00


Q ss_pred             CCCCCCCHhHHHhCCcE--EEeCceEEEEECCCC----EEEeCCCcE--EecceEEEccCC--CccccCCCCCCCCCC--
Q 013952           71 SGGERLLPEWYKEKGIE--LILSTEIVRADIASK----TLLSATGLI--FKYQILVIATGS--TVLRLTDFGVEGADA--  138 (433)
Q Consensus        71 ~~~~~~~~~~~~~~~v~--~~~~~~v~~i~~~~~----~v~~~~~~~--~~~d~lvlAtG~--~~~~~~~~~~~g~~~--  138 (433)
                      ........+++++++..  +...+.|..++++.+    +|+++++.+  +.+|+||+|||-  .|..|+   ++|.+.  
T Consensus        82 ~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~---~~G~~~f~  158 (443)
T COG2072          82 AEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPD---FAGLDEFK  158 (443)
T ss_pred             ccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCC---CCCccCCC
Confidence            01122344555555543  233334444544432    477777755  559999999994  677777   455432  


Q ss_pred             CCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC
Q 013952          139 KNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM  198 (433)
Q Consensus       139 ~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~  198 (433)
                      ..+++..+..+...+       .+|+|+|||+|.+|++++..|.+.|.+|+++.|.+...
T Consensus       159 g~~~HS~~~~~~~~~-------~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~~  211 (443)
T COG2072         159 GRILHSADWPNPEDL-------RGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPHI  211 (443)
T ss_pred             ceEEchhcCCCcccc-------CCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCce
Confidence            346666555555444       79999999999999999999999999999999886543

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=99.75  E-value=3.5e-18  Score=168.99  Aligned_cols=287  Identities=22%  Similarity=0.287  Sum_probs=169.4

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      -++|.|||+|||||+||-.|.+.|+.   |++.|+.    +|   .++++.    +.+|..+....  ..++-.+++.+.
T Consensus      1785 g~~vaiigsgpaglaaadqlnk~gh~---v~vyer~----dr---~ggll~----ygipnmkldk~--vv~rrv~ll~~e 1848 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHT---VTVYERS----DR---VGGLLM----YGIPNMKLDKF--VVQRRVDLLEQE 1848 (2142)
T ss_pred             CcEEEEEccCchhhhHHHHHhhcCcE---EEEEEec----CC---cCceee----ecCCccchhHH--HHHHHHHHHHhh
Confidence            47999999999999999999999987   9999988    11   122221    22232221100  112345677789


Q ss_pred             CcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCC-ccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHH-----
Q 013952           85 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST-VLRLTDFGVEGADAKNIFYLREIDDADKLVEAIK-----  158 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~-~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~-----  158 (433)
                      |++|+.++++      ++.+.+ |+..-.+|.+|+|+|+. |+..|   +||-+.+++...-.+.+.. -+..+.     
T Consensus      1849 gi~f~tn~ei------gk~vs~-d~l~~~~daiv~a~gst~prdlp---v~grd~kgv~fame~l~~n-tk~lld~~~d~ 1917 (2142)
T KOG0399|consen 1849 GIRFVTNTEI------GKHVSL-DELKKENDAIVLATGSTTPRDLP---VPGRDLKGVHFAMEFLEKN-TKSLLDSVLDG 1917 (2142)
T ss_pred             CceEEeeccc------cccccH-HHHhhccCeEEEEeCCCCCcCCC---CCCccccccHHHHHHHHHh-HHhhhcccccc
Confidence            9999998765      333332 33345789999999984 67666   7888877776432222221 111111     


Q ss_pred             ---hcCCCcEEEECCCHHHHHHHHHHHhCCCeEE-EEc--cCCc-------cCCC---CCCHHHH-HHHHHHHHhcCcEE
Q 013952          159 ---AKKNGKAVVVGGGYIGLELSAALKINNIDVS-MVY--PEPW-------CMPR---LFTADIA-AFYEGYYANKGIKI  221 (433)
Q Consensus       159 ---~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~-li~--~~~~-------~~~~---~~~~~~~-~~l~~~l~~~GV~v  221 (433)
                         +.++|+|+|||||.+|.++...-.+.|++-. -++  +.+.       +.|.   .|.-+.. +..++   ..|-..
T Consensus      1918 ~~~~~~gkkvivigggdtg~dcigtsvrhg~~sv~n~ellp~pp~~ra~~npwpqwprvfrvdygh~e~~~---~~g~dp 1994 (2142)
T KOG0399|consen 1918 NYISAKGKKVIVIGGGDTGTDCIGTSVRHGCKSVGNFELLPQPPPERAPDNPWPQWPRVFRVDYGHAEAKE---HYGSDP 1994 (2142)
T ss_pred             ceeccCCCeEEEECCCCccccccccchhhccceecceeecCCCCcccCCCCCCccCceEEEeecchHHHHH---HhCCCc
Confidence               1268999999999999999888888886432 222  1111       1111   1111111 11111   111111


Q ss_pred             Ec-----------------CCeEE--EEEecCCCcEEEEEeCC-CcEEECCEEEEcccCccChhhhh--ccccc-CCCcE
Q 013952          222 IK-----------------GTVAV--GFTTNADGEVKEVKLKD-GRTLEADIVVVGVGGRPLISLFK--GQVAE-NKGGI  278 (433)
Q Consensus       222 ~~-----------------~~~v~--~i~~~~~g~~~~v~~~~-g~~i~~d~vi~a~G~~p~~~~~~--~~~~~-~~g~i  278 (433)
                      ++                 +-+..  +++.++.|+-.-++..+ .+.++||+||+|.|+........  .++.. .++.|
T Consensus      1995 r~y~vltk~f~~~~~g~v~gl~~vrvew~k~~~g~w~~~ei~~see~~eadlv~lamgf~gpe~~~~~~~~~~~d~rsni 2074 (2142)
T KOG0399|consen 1995 RTYSVLTKRFIGDDNGNVTGLETVRVEWEKDDKGRWQMKEINNSEEIIEADLVILAMGFVGPEKSVIEQLNLKTDPRSNI 2074 (2142)
T ss_pred             ceeeeeeeeeeccCCCceeeEEEEEEEEEecCCCceEEEEcCCcceeeecceeeeeccccCcchhhhhhcCcccCccccc
Confidence            11                 11111  12222333332223322 25799999999999865554332  23444 33444


Q ss_pred             Ee-CCCCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhcc
Q 013952          279 ET-DDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMAT  331 (433)
Q Consensus       279 ~v-d~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~  331 (433)
                      .. ++.+.|.+++|||+|||-.+..          ++..|+++||.+|+.+-..
T Consensus      2075 ~t~~~~y~t~v~~vfaagdcrrgqs----------lvvwai~egrq~a~~vd~~ 2118 (2142)
T KOG0399|consen 2075 LTPKDSYSTDVAKVFAAGDCRRGQS----------LVVWAIQEGRQAARQVDEL 2118 (2142)
T ss_pred             cCCCccccccccceeecccccCCce----------EEEEEehhhhHHHHHHHHH
Confidence            43 4568899999999999998764          3455788999999987643

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=99.74  E-value=6.8e-17  Score=153.52  Aligned_cols=173  Identities=20%  Similarity=0.170  Sum_probs=120.8

Q ss_pred             HHHHHHHHhcCCCcEEEECCCHHHHHHH-HHHH----hCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCC
Q 013952          151 DKLVEAIKAKKNGKAVVVGGGYIGLELS-AALK----INNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGT  225 (433)
Q Consensus       151 ~~~~~~~~~~~~~~v~ViG~G~~g~e~a-~~l~----~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~  225 (433)
                      ..+.+.++......=.|++.+.+|+|.+ ..+.    +.|.+|+++...+..++.   .++.+.+.+.+++.|++++.++
T Consensus       204 ~~l~~~l~~~~~~~~~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG---~rL~~aL~~~l~~~Gv~I~~g~  280 (422)
T PRK05329        204 EALADALKPLAGDAEAVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPG---LRLQNALRRAFERLGGRIMPGD  280 (422)
T ss_pred             HHHHHHHHHhcCCCCEEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCch---HHHHHHHHHHHHhCCCEEEeCC
Confidence            3444444443333447788999999998 6664    569999999888887763   5889999999999999999999


Q ss_pred             eEEEEEecCCCcEEEEEeCCC--cEEECCEEEEcccCccChhhh-----------hcc------------------cccC
Q 013952          226 VAVGFTTNADGEVKEVKLKDG--RTLEADIVVVGVGGRPLISLF-----------KGQ------------------VAEN  274 (433)
Q Consensus       226 ~v~~i~~~~~g~~~~v~~~~g--~~i~~d~vi~a~G~~p~~~~~-----------~~~------------------~~~~  274 (433)
                      +|.+++. .++.+..+...++  ..+++|.+|+|+|+.++..+.           ...                  ....
T Consensus       281 ~V~~v~~-~~~~V~~v~~~~g~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~~  359 (422)
T PRK05329        281 EVLGAEF-EGGRVTAVWTRNHGDIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPFL  359 (422)
T ss_pred             EEEEEEE-eCCEEEEEEeeCCceEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCchh
Confidence            9999986 3455555555455  358999999999986554431           000                  0112


Q ss_pred             CCcEEeCCCCC-------CCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhcc
Q 013952          275 KGGIETDDFFK-------TSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMAT  331 (433)
Q Consensus       275 ~g~i~vd~~~~-------t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~  331 (433)
                      .-+|.+|++||       +..+|+||+|++.+++++.....    ....|+..|-.|+++|...
T Consensus       360 ~~GV~~d~~~~p~~~~g~~~~~nl~a~G~vl~g~d~~~~~~----g~Gva~~ta~~a~~~~~~~  419 (422)
T PRK05329        360 QFGVATDATLRPLDSQGGPVIENLYAAGAVLGGYDPIREGC----GSGVALATALHAAEQIAEE  419 (422)
T ss_pred             hcCceECCCcCcccCCCCeeccceEEeeehhcCCchHHhCC----CchhHHHHHHHHHHHHHHh
Confidence            23466666655       46899999999999988643211    1234667778888887653

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.68  E-value=8.5e-16  Score=145.95  Aligned_cols=238  Identities=18%  Similarity=0.209  Sum_probs=142.1

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC--C-CCCCCC--------Ccccc--ccCCCCCCCCCCcccccC
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE--V-APYERP--------ALSKA--YLFPEGTARLPGFHVCVG   70 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~--~-~~~~~~--------~~~~~--~~~~~~~~~~~~~~~~~~   70 (433)
                      ...+|+|||||+|||++|+.|.+.|++   ++++|+.  . ..|..+        ..-+.  ...+.....++.+++...
T Consensus         5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~---v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~   81 (448)
T KOG1399|consen    5 MSKDVAVIGAGPAGLAAARELLREGHE---VVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPER   81 (448)
T ss_pred             CCCceEEECcchHHHHHHHHHHHCCCC---ceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCccc
Confidence            368999999999999999999999998   9999999  2 222222        00000  011112222333332211


Q ss_pred             -C-------CCCCCCHhHHHhCCc--EEEeCceEEEEECCCC---EEEeCCC----cEEecceEEEccCCC--ccccCCC
Q 013952           71 -S-------GGERLLPEWYKEKGI--ELILSTEIVRADIASK---TLLSATG----LIFKYQILVIATGST--VLRLTDF  131 (433)
Q Consensus        71 -~-------~~~~~~~~~~~~~~v--~~~~~~~v~~i~~~~~---~v~~~~~----~~~~~d~lvlAtG~~--~~~~~~~  131 (433)
                       .       +..+.+.++.+.+++  .+..+++|..++...+   .|.+.++    ++.-||.|++|||-.  |+.|..+
T Consensus        82 ~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~  161 (448)
T KOG1399|consen   82 DPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIP  161 (448)
T ss_pred             CcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCC
Confidence             0       111233444455554  4667777777776552   4555443    467899999999976  6666642


Q ss_pred             CCC-CCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHH
Q 013952          132 GVE-GADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFY  210 (433)
Q Consensus       132 ~~~-g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l  210 (433)
                      +.. ..-...+++..++.....+       .+|+|+|||.|.+|+|++..+++...+|++..+ ...... ...      
T Consensus       162 g~~~~~f~G~~iHS~~Yk~~e~f-------~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~-~~~~~~-~~~------  226 (448)
T KOG1399|consen  162 GPGIESFKGKIIHSHDYKSPEKF-------RDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVV-SPKVHV-EPP------  226 (448)
T ss_pred             CCchhhcCCcceehhhccCcccc-------cCceEEEECCCccHHHHHHHHHHhccCcceeee-cccccc-ccc------
Confidence            210 0223456666665544433       689999999999999999999988888887754 100000 000      


Q ss_pred             HHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhhh
Q 013952          211 EGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFK  268 (433)
Q Consensus       211 ~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~~  268 (433)
                       . ....++..+.  .|..+..  ++   .+.+.++....+|.+|+|||+.-...++.
T Consensus       227 -~-~~~~~~~~~~--~i~~~~e--~~---~~~~~~~~~~~~D~ii~ctgy~y~fPfl~  275 (448)
T KOG1399|consen  227 -E-ILGENLWQVP--SIKSFTE--DG---SVFEKGGPVERVDRIIFCTGYKYKFPFLE  275 (448)
T ss_pred             -c-eeecceEEcc--ccccccC--cc---eEEEcCceeEEeeeEEEeeeeEeecceec
Confidence             0 0111222221  1444432  33   35556777889999999999876665554

>PTZ00188 adrenodoxin reductase; Provisional

Probab=99.65  E-value=1.2e-14  Score=137.96  Aligned_cols=274  Identities=16%  Similarity=0.181  Sum_probs=150.1

Q ss_pred             cCeEEEECCCHHHHHHHHHHH-HcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHh
Q 013952            5 SFKYVILGGGVSAGYAAREFA-KQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   83 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~-~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (433)
                      .++|+||||||||++||.+|. +.|++   |+|+|+...++       |++...-+...+....     ....+...+..
T Consensus        39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~---VtlfEk~p~pg-------GLvR~GVaPdh~~~k~-----v~~~f~~~~~~  103 (506)
T PTZ00188         39 PFKVGIIGAGPSALYCCKHLLKHERVK---VDIFEKLPNPY-------GLIRYGVAPDHIHVKN-----TYKTFDPVFLS  103 (506)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCe---EEEEecCCCCc-------cEEEEeCCCCCccHHH-----HHHHHHHHHhh
Confidence            468999999999999999765 55766   99999994333       2222111111111100     01122233444


Q ss_pred             CCcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCC------CC-CCC----CCCEEEecCH-----
Q 013952           84 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFG------VE-GAD----AKNIFYLREI-----  147 (433)
Q Consensus        84 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~------~~-g~~----~~~v~~~~~~-----  147 (433)
                      .++++..+..+      +..++.++- .-.||.||+|+|+.+..++.++      +. |.+    ..++|...++     
T Consensus       104 ~~v~f~gnv~V------G~Dvt~eeL-~~~YDAVIlAtGA~~l~ipi~~~~~~~~~~GGe~~~~~l~Gvf~A~dfV~WYN  176 (506)
T PTZ00188        104 PNYRFFGNVHV------GVDLKMEEL-RNHYNCVIFCCGASEVSIPIGQQDEDKAVSGGETNPRKQNGIFHARDLIYFYN  176 (506)
T ss_pred             CCeEEEeeeEe------cCccCHHHH-HhcCCEEEEEcCCCCCCCCcccccceeeeccccccccccCcEEehheEEEeec
Confidence            67777643222      122222222 2389999999999865443100      00 222    2355543332     


Q ss_pred             HHH-----HHHHHHHHhc-CCCcEEEECCCHHHHHHHHHHH--------------------hCC-CeEEEEccCCccCCC
Q 013952          148 DDA-----DKLVEAIKAK-KNGKAVVVGGGYIGLELSAALK--------------------INN-IDVSMVYPEPWCMPR  200 (433)
Q Consensus       148 ~~~-----~~~~~~~~~~-~~~~v~ViG~G~~g~e~a~~l~--------------------~~g-~~V~li~~~~~~~~~  200 (433)
                      .+.     ..+..++..+ ..++++|||.|++++++|..|.                    +.+ .+|+++.|....-..
T Consensus       177 g~p~~~~~~~~~ayL~p~~~~~~vvVIG~GNVAlDvARiL~~~~d~L~~TDI~~~aL~~L~~s~v~~V~ivgRRGp~qaa  256 (506)
T PTZ00188        177 NMYNDVRCKAVDNYLNSFENFTTSIIIGNGNVSLDIARILIKSPDDLSKTDISSDYLKVIKRHNIKHIYIVGRRGFWQSS  256 (506)
T ss_pred             CCCCccccccccccccccCCCCcEEEECCCchHHHHHHHHccCHHHhhcCCCcHHHHHHHHhCCCcEEEEEEecCHHHhC
Confidence            111     0121122111 3578999999999999999753                    223 357777765322110


Q ss_pred             CC------------------CHH-----------------------HHHHHHHHHH----------hcCcEEEcCCeEEE
Q 013952          201 LF------------------TAD-----------------------IAAFYEGYYA----------NKGIKIIKGTVAVG  229 (433)
Q Consensus       201 ~~------------------~~~-----------------------~~~~l~~~l~----------~~GV~v~~~~~v~~  229 (433)
                      +-                  +.+                       ..+.+.+..+          .+.+.+++...+.+
T Consensus       257 FT~kElrEL~~l~~~~v~v~~~d~~~~~~~~~~~~~~r~~~r~~~~~~~~l~~~~~~~~~~~~~~~~r~i~l~F~~sP~e  336 (506)
T PTZ00188        257 FTNAELRELISLENTKVILSKKNYDLCCHLKSDEENTNMKKRQHEIFQKMVKNYEEVEKNKEFYKTYKIIEFIFYFEIRQ  336 (506)
T ss_pred             CCHHHHHHHhcCCCCeEEEChhhhcccccccchhhhhhhhhhhhhHHHHHHHHHHhhccCccCCCCceEEEEEccCCceE
Confidence            00                  000                       1112222221          13467888888888


Q ss_pred             EEecCCCcEEEEEeC-----------CC--cEEECCEEEEcccCccChhhhhcccccCCCcEEeCCCCCC--CCCCeEEc
Q 013952          230 FTTNADGEVKEVKLK-----------DG--RTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKT--SADDVYAV  294 (433)
Q Consensus       230 i~~~~~g~~~~v~~~-----------~g--~~i~~d~vi~a~G~~p~~~~~~~~~~~~~g~i~vd~~~~t--~~~~vfa~  294 (433)
                      |.. .++++.++++.           .|  ++++||+|+-++|++...-  . ++..++. +.. ...+.  ..|++|++
T Consensus       337 i~~-~~~~v~~v~~~~n~l~~~~~~~tg~~~~~~~~lV~rsiGY~g~p~--~-g~pFd~~-~~n-~~grv~~~~~g~Y~~  410 (506)
T PTZ00188        337 IRP-IDGAMKNVELELNKNVPMSFSSFKENKVLVTPLVIFATGFKKSNF--A-ENLYNQS-VQM-FKEDIGQHKFAIFKA  410 (506)
T ss_pred             EEC-CCCcEeEEEEEEeecccCccCCCCeeEEEEcCEEEEcccccCCCC--C-CCCcccc-CCC-CCCcccCCCCCcEEe
Confidence            875 34677777765           23  3699999999999875431  1 2222311 211 11221  37999999


Q ss_pred             CccccccccccC
Q 013952          295 GDVATFPMKLYR  306 (433)
Q Consensus       295 Gd~~~~~~~~~~  306 (433)
                      |.+-.+|....+
T Consensus       411 GWiKrGP~GvIg  422 (506)
T PTZ00188        411 GWFDKGPKGNIA  422 (506)
T ss_pred             eecCcCCCceec
Confidence            999988876444

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=99.64  E-value=2.4e-15  Score=134.07  Aligned_cols=289  Identities=18%  Similarity=0.220  Sum_probs=164.0

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      ..+|.|||+||||+++|..|.++ .+...|.|+|+...||.       +....-++..|..+.     ....+...++..
T Consensus        20 ~p~vcIVGsGPAGfYtA~~LLk~-~~~~~Vdi~Ek~PvPFG-------LvRyGVAPDHpEvKn-----vintFt~~aE~~   86 (468)
T KOG1800|consen   20 TPRVCIVGSGPAGFYTAQHLLKR-HPNAHVDIFEKLPVPFG-------LVRYGVAPDHPEVKN-----VINTFTKTAEHE   86 (468)
T ss_pred             CceEEEECCCchHHHHHHHHHhc-CCCCeeEeeecCCcccc-------eeeeccCCCCcchhh-----HHHHHHHHhhcc
Confidence            46999999999999999999986 34566999999944442       211111222222211     112355556666


Q ss_pred             CcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCC-ccccCCCCCCCCCCCCEEEecCHHHHHHHHHHH------
Q 013952           85 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST-VLRLTDFGVEGADAKNIFYLREIDDADKLVEAI------  157 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~-~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~------  157 (433)
                      ...|..+..+      ++.+.+.+ -+-.||.+|||.|+. ++..+   |||.+..+|++.+.+-.   +..-+      
T Consensus        87 rfsf~gNv~v------G~dvsl~e-L~~~ydavvLaYGa~~dR~L~---IPGe~l~~V~Sarefv~---Wyng~P~~~~l  153 (468)
T KOG1800|consen   87 RFSFFGNVKV------GRDVSLKE-LTDNYDAVVLAYGADGDRRLD---IPGEELSGVISAREFVG---WYNGLPENQNL  153 (468)
T ss_pred             ceEEEeccee------cccccHHH-HhhcccEEEEEecCCCCcccC---CCCcccccceehhhhhh---hccCCCccccc
Confidence            6777666443      22233322 235799999999985 56566   79988888887654332   22211      


Q ss_pred             -HhcCCCcEEEECCCHHHHHHHHHHHhC----------------------CCeEEEEccCCccCCCC-------------
Q 013952          158 -KAKKNGKAVVVGGGYIGLELSAALKIN----------------------NIDVSMVYPEPWCMPRL-------------  201 (433)
Q Consensus       158 -~~~~~~~v~ViG~G~~g~e~a~~l~~~----------------------g~~V~li~~~~~~~~~~-------------  201 (433)
                       .+....+++|||.|.+++++|..|..-                      =.+|+++.|.......+             
T Consensus       154 e~dls~~~vvIvG~GNVAlDvARiLls~~~~l~~~TDi~~~aL~~L~~s~VkdV~lvgRRgp~~~aFTiKELRE~~~l~~  233 (468)
T KOG1800|consen  154 EPDLSGRKVVIVGNGNVALDVARILLSPQGPLFRRTDIPKLALNLLKRSNVKDVKLVGRRGPLQVAFTIKELREVLELPG  233 (468)
T ss_pred             CcccccceEEEEccCchhhhhhhhhhCCccccccccCCcHHHHhhhhcCCcceEEEEeccCccceeeeHHHHHHHhCCCC
Confidence             112468999999999999999887431                      13577776653321100             


Q ss_pred             ---------C---------------CHHHHHHHHHHHHhc---------CcE---EEcCCeEEEEEecCCCcEEE-----
Q 013952          202 ---------F---------------TADIAAFYEGYYANK---------GIK---IIKGTVAVGFTTNADGEVKE-----  240 (433)
Q Consensus       202 ---------~---------------~~~~~~~l~~~l~~~---------GV~---v~~~~~v~~i~~~~~g~~~~-----  240 (433)
                               +               -+++.+.+.+.++++         +.+   +.+.....+|...+++ +..     
T Consensus       234 ~~~r~~~~~~~~~~~~~~~~~~~RpRkrl~ell~k~~~e~~~~~~~~~~~~k~w~~~f~r~P~~i~~~~~~-v~~~~~~~  312 (468)
T KOG1800|consen  234 ARPRLDPVDFSGKWMDESETPQHRPRKRLTELLLKWAREHRAKASEEAGGSKQWHLRFFRTPGAILPGADG-VSGVRFQV  312 (468)
T ss_pred             cccccCchhccceeCCcccccccCchhHHHHHHHHHHHhhhhccccccCccchhHHHHhcCHHHhccCccc-ccceEEEe
Confidence                     0               012333333333331         111   1111122233321111 111     


Q ss_pred             --------EEeCCCcEEECCEEEEcccCccChhhhhccccc-CCCcEEeCCCCCC----CCCCeEEcCccccccccccCc
Q 013952          241 --------VKLKDGRTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKT----SADDVYAVGDVATFPMKLYRE  307 (433)
Q Consensus       241 --------v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t----~~~~vfa~Gd~~~~~~~~~~~  307 (433)
                              +.+.+-++++|++++.++|++...  +..++.. +..+++-|.+.+.    -.|++|++|.|..+|..    
T Consensus       313 t~l~~~~~~~tg~~e~~p~~l~i~sIGYks~p--v~~gipFd~~kgvv~n~~GrV~~s~~~pglY~sGW~k~GP~G----  386 (468)
T KOG1800|consen  313 TILEGTQAVPTGAFETLPCGLLIRSIGYKSVP--VDSGIPFDDKKGVVPNVNGRVLVSGCSPGLYASGWVKHGPTG----  386 (468)
T ss_pred             eeehhhcccccCceEeeccceeEeeeeecccc--cCCCCCcccccCcccCCCceEEeeccCCceEEEeeeccCCcc----
Confidence                    112223579999999999976432  2224444 3334444444443    35999999999988763    


Q ss_pred             ccccccHHHHHHHHHHHHHHHhcc
Q 013952          308 MRRVEHVDHARKSAEQAVKTIMAT  331 (433)
Q Consensus       308 ~~~~~~~~~A~~~g~~aa~~i~~~  331 (433)
                           .+..++.++..++..|...
T Consensus       387 -----vIattm~dAf~v~d~I~qD  405 (468)
T KOG1800|consen  387 -----VIATTMQDAFEVADTIVQD  405 (468)
T ss_pred             -----eeeehhhhHHHHHHHHHHH
Confidence                 3445556666666666544

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=99.57  E-value=5.3e-13  Score=122.89  Aligned_cols=198  Identities=18%  Similarity=0.309  Sum_probs=112.9

Q ss_pred             EEecceEEEccCCCccccCCCCCCCC-CCCCEEEecCHHHHHHHHH--------HHH---hcCCCcEEEE---CCCH---
Q 013952          111 IFKYQILVIATGSTVLRLTDFGVEGA-DAKNIFYLREIDDADKLVE--------AIK---AKKNGKAVVV---GGGY---  172 (433)
Q Consensus       111 ~~~~d~lvlAtG~~~~~~~~~~~~g~-~~~~v~~~~~~~~~~~~~~--------~~~---~~~~~~v~Vi---G~G~---  172 (433)
                      ++....+|+|||-.+.......--|. ..++|++.-   +.+++..        .++   ..++++|++|   |+..   
T Consensus       298 e~~vGaIIvAtGy~~~Da~~k~EyGYG~~~nVIT~l---ElErml~~~GPT~GkvlrpSdg~~pKrVaFIqCVGSRD~~~  374 (622)
T COG1148         298 ELEVGAIIVATGYKPFDATRKEEYGYGKYPNVITNL---ELERMLNPNGPTGGKVLRPSDGKPPKRVAFIQCVGSRDFQV  374 (622)
T ss_pred             EEEeceEEEEccccccCcchhhhcCCCCCcchhhHH---HHHHHhccCCCCCceEEecCCCCCCceEEEEEEecCcCccc
Confidence            57889999999988765442111111 123444322   2222211        011   1267888885   6543   


Q ss_pred             -----H------HHHHHHHHHhC--CCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEE
Q 013952          173 -----I------GLELSAALKIN--NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVK  239 (433)
Q Consensus       173 -----~------g~e~a~~l~~~--g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~  239 (433)
                           +      ++.-|....++  ..+|++....-+.    +....-+.+.+.-++.||+++.+ ++.+|...+++. .
T Consensus       375 ~n~YCSrvCCm~slKqA~~Ike~~Pd~~v~I~YmDiRa----fG~~yEefY~~~Q~~~gV~fIRG-rvaei~e~p~~~-l  448 (622)
T COG1148         375 GNPYCSRVCCMVSLKQAQLIKERYPDTDVTIYYMDIRA----FGKDYEEFYVRSQEDYGVRFIRG-RVAEIAEFPKKK-L  448 (622)
T ss_pred             CChhhHHHHHHHHHhhhhhhhhcCCCcceeEEEEEeec----cCccHHHHHHhhhhhhchhhhcC-ChHHheeCCCCe-e
Confidence                 1      12222233332  3456665433222    34444455556556889999988 466666545555 3


Q ss_pred             EEEeCC---C--cEEECCEEEEcccCccChhh--hh--ccccc-CCCcEEeC-CCCC---CCCCCeEEcCcccccccccc
Q 013952          240 EVKLKD---G--RTLEADIVVVGVGGRPLISL--FK--GQVAE-NKGGIETD-DFFK---TSADDVYAVGDVATFPMKLY  305 (433)
Q Consensus       240 ~v~~~~---g--~~i~~d~vi~a~G~~p~~~~--~~--~~~~~-~~g~i~vd-~~~~---t~~~~vfa~Gd~~~~~~~~~  305 (433)
                      .|+..|   |  .++++|+|++++|..|....  +.  .++.. ++|++... +.++   |+.++||.+|-+.+.     
T Consensus       449 ~V~~EdTl~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~~~~gF~k~~hPkl~pv~s~~~GIflAG~aqgP-----  523 (622)
T COG1148         449 IVRVEDTLTGEVKEIEADLVVLATGMEPSEGAKKIAKILGLSQDEDGFLKEAHPKLRPVDSNRDGIFLAGAAQGP-----  523 (622)
T ss_pred             EEEEEeccCccceecccceEEEeeccccCcchHHHHHhcCcccCCCCccccCCCCcccccccCCcEEEeecccCC-----
Confidence            444433   2  47999999999999885542  22  34555 57777665 5554   588999999976664     


Q ss_pred             CcccccccHHHHHHHHHHHHHHH
Q 013952          306 REMRRVEHVDHARKSAEQAVKTI  328 (433)
Q Consensus       306 ~~~~~~~~~~~A~~~g~~aa~~i  328 (433)
                            +.+..++.||..||...
T Consensus       524 ------kdI~~siaqa~aAA~kA  540 (622)
T COG1148         524 ------KDIADSIAQAKAAAAKA  540 (622)
T ss_pred             ------ccHHHHHHHhHHHHHHH
Confidence                  34555666666655443

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=99.52  E-value=2.3e-13  Score=98.89  Aligned_cols=80  Identities=34%  Similarity=0.620  Sum_probs=73.9

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe
Q 013952          164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL  243 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~  243 (433)
                      +++|||+|++|+|+|..|.+.|.+|+++++.+.+++ .+++++.+.+.+.+++.||++++++.++++..++++ +. |++
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~-~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~-~~-V~~   77 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLP-GFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDG-VE-VTL   77 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSST-TSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTS-EE-EEE
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhh-hcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCE-EE-EEE
Confidence            589999999999999999999999999999999995 489999999999999999999999999999986666 55 888


Q ss_pred             CCC
Q 013952          244 KDG  246 (433)
Q Consensus       244 ~~g  246 (433)
                      +||
T Consensus        78 ~~g   80 (80)
T PF00070_consen   78 EDG   80 (80)
T ss_dssp             ETS
T ss_pred             ecC
Confidence            876

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.45  E-value=2.3e-12  Score=117.27  Aligned_cols=84  Identities=13%  Similarity=0.122  Sum_probs=64.8

Q ss_pred             HHHHHHHhCCCeEEEEccCCccCCC-CCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEE
Q 013952          176 ELSAALKINNIDVSMVYPEPWCMPR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIV  254 (433)
Q Consensus       176 e~a~~l~~~g~~V~li~~~~~~~~~-~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~v  254 (433)
                      ++..++.++|.+...= ...+++|. .-..++.+.+.+.+++.||+++++++|.+++.  ++....+.+++|+++.||.+
T Consensus        83 d~i~~~e~~Gi~~~e~-~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~--~~~~f~l~t~~g~~i~~d~l  159 (408)
T COG2081          83 DFIDWVEGLGIALKEE-DLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEK--DDSGFRLDTSSGETVKCDSL  159 (408)
T ss_pred             HHHHHHHhcCCeeEEc-cCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEe--cCceEEEEcCCCCEEEccEE
Confidence            4455666677654443 33444443 33568899999999999999999999999998  44557899999989999999


Q ss_pred             EEccc--Ccc
Q 013952          255 VVGVG--GRP  262 (433)
Q Consensus       255 i~a~G--~~p  262 (433)
                      |+|+|  ..|
T Consensus       160 ilAtGG~S~P  169 (408)
T COG2081         160 ILATGGKSWP  169 (408)
T ss_pred             EEecCCcCCC
Confidence            99999  545

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=99.37  E-value=1.4e-10  Score=109.18  Aligned_cols=138  Identities=17%  Similarity=0.182  Sum_probs=96.8

Q ss_pred             hCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCC--cEEECCEEEEcccC
Q 013952          183 INNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG--RTLEADIVVVGVGG  260 (433)
Q Consensus       183 ~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g--~~i~~d~vi~a~G~  260 (433)
                      ..|+.|..+-   .+.|......+.+.+.+.+++.|++++.+++|.++.. +++++..+.+.++  ..+.+|.+|+|+|.
T Consensus       245 ~~g~~v~E~p---tlPPSv~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~-~~~~v~~V~t~~g~~~~l~AD~vVLAaGa  320 (419)
T TIGR03378       245 ATGLTLCELP---TMPPSLLGIRLEEALKHRFEQLGGVMLPGDRVLRAEF-EGNRVTRIHTRNHRDIPLRADHFVLASGS  320 (419)
T ss_pred             HHCCCEEeCC---CCCCCCcHHHHHHHHHHHHHHCCCEEEECcEEEEEEe-eCCeEEEEEecCCccceEECCEEEEccCC
Confidence            3477776663   3334445789999999999999999999999999986 4566777776665  47999999999997


Q ss_pred             ccChhhh-----------hccc------------------ccCCCcEEeCCCCCC-----CCCCeEEcCccccccccccC
Q 013952          261 RPLISLF-----------KGQV------------------AENKGGIETDDFFKT-----SADDVYAVGDVATFPMKLYR  306 (433)
Q Consensus       261 ~p~~~~~-----------~~~~------------------~~~~g~i~vd~~~~t-----~~~~vfa~Gd~~~~~~~~~~  306 (433)
                      .-...+.           +..+                  ....-+|.+|++||.     ..+|+||+|-+.+++++...
T Consensus       321 w~S~gL~a~l~~i~Epif~L~v~~~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~~g~~~~Nl~a~G~vL~G~d~~~~  400 (419)
T TIGR03378       321 FFSNGLVAEFDKIYEPIFGLDVLQLPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIENLYAIGAVLGGYDPIFE  400 (419)
T ss_pred             CcCHHHHhhcCceeeeccCCCcCCCcchhhhcchhhcCCChhhhcCceEccccCccCCCcccccceEechhhcCCChHhc
Confidence            6222221           1111                  012236889999983     38999999999999886432


Q ss_pred             cccccccHHHHHHHHHHHHHHH
Q 013952          307 EMRRVEHVDHARKSAEQAVKTI  328 (433)
Q Consensus       307 ~~~~~~~~~~A~~~g~~aa~~i  328 (433)
                      ..    -...|+..|-.||++|
T Consensus       401 gc----G~GVai~Ta~~aa~~i  418 (419)
T TIGR03378       401 GC----GSGVAVSTALHAAEQI  418 (419)
T ss_pred             CC----CchhHHHHHHHHHHhh
Confidence            11    1134666777777776

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.33  E-value=2.3e-10  Score=106.99  Aligned_cols=182  Identities=19%  Similarity=0.267  Sum_probs=98.7

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-C----CCCCCCCccccccCCCCC--CCCCCccc----c------
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-V----APYERPALSKAYLFPEGT--ARLPGFHV----C------   68 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~----~~~~~~~~~~~~~~~~~~--~~~~~~~~----~------   68 (433)
                      ++|+|||||++|++.|.+|.+.-.....|.|+|+. .    .+|........+..+...  ...|..+.    .      
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~   81 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ   81 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence            58999999999999999999975434449999998 2    333321111100000000  00011000    0      


Q ss_pred             --------------------cCCCCCCCCHhHHHhCC---cEEEeCceEEEEECC----CCEEEeCCCcEEecceEEEcc
Q 013952           69 --------------------VGSGGERLLPEWYKEKG---IELILSTEIVRADIA----SKTLLSATGLIFKYQILVIAT  121 (433)
Q Consensus        69 --------------------~~~~~~~~~~~~~~~~~---v~~~~~~~v~~i~~~----~~~v~~~~~~~~~~d~lvlAt  121 (433)
                                          +|....+.+..++++..   +.++.. +++++.+.    ...+...+|....+|-+|+||
T Consensus        82 ~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~-~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlat  160 (474)
T COG4529          82 RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIRE-EATSVRQDTNAGGYLVTTADGPSEIADIIVLAT  160 (474)
T ss_pred             ccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEee-eeecceeccCCceEEEecCCCCeeeeeEEEEec
Confidence                                00000111112222222   555553 55555444    234667788888999999999


Q ss_pred             CCCccccCC--CCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCC--eEEEEccCC
Q 013952          122 GSTVLRLTD--FGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNI--DVSMVYPEP  195 (433)
Q Consensus       122 G~~~~~~~~--~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~--~V~li~~~~  195 (433)
                      |..+..++.  ..+++.  +..  ..+...+..+ ..++  ...+|+|+|+|.+.++....|...|.  +||.+.|..
T Consensus       161 gh~~~~~~~~~~~~~~~--~~~--ia~~~~~~~l-d~v~--~~drVli~GsgLt~~D~v~~l~~~gh~g~It~iSRrG  231 (474)
T COG4529         161 GHSAPPADPAARDLKGS--PRL--IADPYPANAL-DGVD--ADDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRRG  231 (474)
T ss_pred             cCCCCCcchhhhccCCC--cce--eccccCCccc-cccc--CCCceEEecCCchhHHHHHHHhccCCccceEEEeccc
Confidence            975533331  001111  111  1111111111 1111  24569999999999999999999875  689888764

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=99.22  E-value=7.6e-11  Score=112.08  Aligned_cols=85  Identities=20%  Similarity=0.268  Sum_probs=56.0

Q ss_pred             HHHHHHHhCCCeEEEEccCCccCCCC-CCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEE
Q 013952          176 ELSAALKINNIDVSMVYPEPWCMPRL-FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIV  254 (433)
Q Consensus       176 e~a~~l~~~g~~V~li~~~~~~~~~~-~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~v  254 (433)
                      ++..++.+.|.... .....++.|.. -..++.+.+++.+++.||+++++++|.++.. .++....|.++++..+.||.|
T Consensus        81 d~~~ff~~~Gv~~~-~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~-~~~~~f~v~~~~~~~~~a~~v  158 (409)
T PF03486_consen   81 DLIAFFEELGVPTK-IEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEK-KEDGVFGVKTKNGGEYEADAV  158 (409)
T ss_dssp             HHHHHHHHTT--EE-E-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEE-ETTEEEEEEETTTEEEEESEE
T ss_pred             HHHHHHHhcCCeEE-EcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeee-cCCceeEeeccCcccccCCEE
Confidence            55667778887644 34455555532 2357888999999999999999999999987 455567888877789999999


Q ss_pred             EEcccCcc
Q 013952          255 VVGVGGRP  262 (433)
Q Consensus       255 i~a~G~~p  262 (433)
                      |+|+|-..
T Consensus       159 ILAtGG~S  166 (409)
T PF03486_consen  159 ILATGGKS  166 (409)
T ss_dssp             EE----SS
T ss_pred             EEecCCCC
Confidence            99999543

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=99.21  E-value=3.5e-10  Score=99.67  Aligned_cols=126  Identities=21%  Similarity=0.212  Sum_probs=85.5

Q ss_pred             CCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCc--EEECCEEEEcccCccChhh-----------h
Q 013952          201 LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGR--TLEADIVVVGVGGRPLISL-----------F  267 (433)
Q Consensus       201 ~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~--~i~~d~vi~a~G~~p~~~~-----------~  267 (433)
                      ...-.+.+.+.+.+++.|.-++.+.+|.+.+- .+++++.|.+.+..  .+.+|..|+|+|.--...+           +
T Consensus       255 llGiRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~-~~~~v~~i~trn~~diP~~a~~~VLAsGsffskGLvae~d~I~EPIf  333 (421)
T COG3075         255 LLGIRLHNQLQRQFEQLGGLWMPGDEVKKATC-KGGRVTEIYTRNHADIPLRADFYVLASGSFFSKGLVAERDKIYEPIF  333 (421)
T ss_pred             hhhhhHHHHHHHHHHHcCceEecCCceeeeee-eCCeEEEEEecccccCCCChhHeeeeccccccccchhhhhhhhcchh
Confidence            34556788889999999999999999999886 67888899888764  4679999999995221111           1


Q ss_pred             hcc------------------cccCCCcEEeCCCCCC-----CCCCeEEcCccccccccccCcccccccHHHHHHHHHHH
Q 013952          268 KGQ------------------VAENKGGIETDDFFKT-----SADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQA  324 (433)
Q Consensus       268 ~~~------------------~~~~~g~i~vd~~~~t-----~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~a  324 (433)
                      ...                  -....-++.+|++||.     ...|+||+|.+.+++++.....    -...|+..|..|
T Consensus       334 ~ldi~~~~dR~~W~~~~ffapqp~~qfGV~tD~~lrp~~~g~~~eNL~aiGavlgGfdpi~egc----GsGVaivta~~a  409 (421)
T COG3075         334 DLDILQTADRAEWYHSDFFAPQPYQQFGVTTDDTLRPSRGGQTIENLYAIGAVLGGFDPIAEGC----GSGVAIVTALHA  409 (421)
T ss_pred             hcccccCcchhhhhhccccCCChhHHhCcccccccCccccchHHHHHHHHHHHhcCCcHHHhcC----CcchHHHHHHHH
Confidence            000                  0112235788888886     3589999999999988653111    012244456666


Q ss_pred             HHHHhcc
Q 013952          325 VKTIMAT  331 (433)
Q Consensus       325 a~~i~~~  331 (433)
                      |..|...
T Consensus       410 a~qi~~~  416 (421)
T COG3075         410 AEQIAER  416 (421)
T ss_pred             HHHHHHH
Confidence            6666654

>PLN02463 lycopene beta cyclase

Probab=99.16  E-value=2.4e-09  Score=103.47  Aligned_cols=118  Identities=14%  Similarity=0.204  Sum_probs=71.2

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCcc--ccc--cC--CCCCCCCCCcccc--------c
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALS--KAY--LF--PEGTARLPGFHVC--------V   69 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~--~~~--~~--~~~~~~~~~~~~~--------~   69 (433)
                      .+||+||||||||+++|..|++.|++   |+|+|+. ...+.+....  ..+  +.  .......+.....        .
T Consensus        28 ~~DVvIVGaGpAGLalA~~La~~Gl~---V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~  104 (447)
T PLN02463         28 VVDLVVVGGGPAGLAVAQQVSEAGLS---VCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDL  104 (447)
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCe---EEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccc
Confidence            58999999999999999999999988   9999997 3333221100  000  00  0000000000000        0


Q ss_pred             CCC--------CCCCCHhHHHhCCcEEEeCceEEEEECCCC--EEEeCCCcEEecceEEEccCCCcc
Q 013952           70 GSG--------GERLLPEWYKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVL  126 (433)
Q Consensus        70 ~~~--------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~  126 (433)
                      ...        ....+.+.+.+.+++++. ..|.++...+.  .|.+.+|.++++|.||.|+|....
T Consensus       105 ~~~y~~V~R~~L~~~Ll~~~~~~GV~~~~-~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~  170 (447)
T PLN02463        105 DRPYGRVNRKKLKSKMLERCIANGVQFHQ-AKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRC  170 (447)
T ss_pred             cCcceeEEHHHHHHHHHHHHhhcCCEEEe-eEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcC
Confidence            000        001122233457899875 58888876554  467788889999999999998654

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=99.14  E-value=4.9e-10  Score=104.69  Aligned_cols=57  Identities=25%  Similarity=0.266  Sum_probs=39.3

Q ss_pred             CCCcEEeCCCCCCCCCCeEEcCccccccccccCccc-ccccHHHHHHHHHHHHHHHhccC
Q 013952          274 NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMR-RVEHVDHARKSAEQAVKTIMATE  332 (433)
Q Consensus       274 ~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~-~~~~~~~A~~~g~~aa~~i~~~~  332 (433)
                      ..|+|.||.+.||+.|++||+|.|+..-.  .|..+ ...+.-.+.--|..+|++|.+..
T Consensus       340 ~mGGI~vD~~GrTsi~gLYAiGEvA~TGl--HGANRLASNSLLE~vV~g~~aA~~i~~~~  397 (518)
T COG0029         340 TMGGIAVDANGRTSIPGLYAIGEVACTGL--HGANRLASNSLLECLVFGKRAAEDIAGRL  397 (518)
T ss_pred             ecccEEECCCCcccCcccEEeeeeccccc--ccchhhhhhhHHHHHHHHHHHHHHhhccc
Confidence            56999999999999999999999986421  22211 11233444455677888887653

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=99.12  E-value=2.2e-09  Score=101.16  Aligned_cols=59  Identities=20%  Similarity=0.313  Sum_probs=49.6

Q ss_pred             CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcE-EECCEEEEcccCcc
Q 013952          203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRT-LEADIVVVGVGGRP  262 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~-i~~d~vi~a~G~~p  262 (433)
                      ..++...+.+.++++|++++++++|..|+..++| +..+.+.+|++ ++|+.||.|.|--.
T Consensus       152 ~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg-~~~~~~~~g~~~~~ak~Vin~AGl~A  211 (429)
T COG0579         152 PGELTRALAEEAQANGVELRLNTEVTGIEKQSDG-VFVLNTSNGEETLEAKFVINAAGLYA  211 (429)
T ss_pred             HHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCc-eEEEEecCCcEEEEeeEEEECCchhH
Confidence            4567888888889999999999999999985565 56778888866 99999999999644

>PRK08401 L-aspartate oxidase; Provisional

Probab=99.10  E-value=3.5e-10  Score=110.82  Aligned_cols=54  Identities=26%  Similarity=0.378  Sum_probs=39.4

Q ss_pred             CCCcEEeCCCCCCCCCCeEEcCcccc-ccccccCccccc-ccHHHHHHHHHHHHHHHhc
Q 013952          274 NKGGIETDDFFKTSADDVYAVGDVAT-FPMKLYREMRRV-EHVDHARKSAEQAVKTIMA  330 (433)
Q Consensus       274 ~~g~i~vd~~~~t~~~~vfa~Gd~~~-~~~~~~~~~~~~-~~~~~A~~~g~~aa~~i~~  330 (433)
                      ..|+|.+|.+.||++||+||+|+|+. ..   +|..+.. .+...+.-.|+.|++++..
T Consensus       309 t~GGi~vd~~~~t~IpGLyAaGE~a~~G~---hG~nrl~gnsl~~~~v~G~~ag~~aa~  364 (466)
T PRK08401        309 TIGGISVDTFYRTGIKNLYAIGEAASNGF---HGANRLASNSLLECIVSGLEVARTISR  364 (466)
T ss_pred             cCCCEEECCCCcccCCCEEECccccccCC---CCCCcchhHHHHHHHHHHHHHHHHHhh
Confidence            56999999999999999999999974 32   2221111 3445566778888888865

>PRK07804 L-aspartate oxidase; Provisional

Probab=99.09  E-value=5.2e-10  Score=111.43  Aligned_cols=33  Identities=24%  Similarity=0.403  Sum_probs=31.2

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      .+||+|||+|.|||+||.++++.|.+   |+|+||.
T Consensus        16 ~~DVlVIG~G~AGl~AAi~aae~G~~---VilleK~   48 (541)
T PRK07804         16 AADVVVVGSGVAGLTAALAARRAGRR---VLVVTKA   48 (541)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCe---EEEEEcc
Confidence            58999999999999999999999887   9999998

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=99.06  E-value=4.1e-10  Score=113.23  Aligned_cols=103  Identities=22%  Similarity=0.230  Sum_probs=77.4

Q ss_pred             CCCcEEEECCCH--HHHHHHHHHHhCCCeEEEEccCCccCCCC-------------CCHHHHHHHHHHHHhcCcEEEcCC
Q 013952          161 KNGKAVVVGGGY--IGLELSAALKINNIDVSMVYPEPWCMPRL-------------FTADIAAFYEGYYANKGIKIIKGT  225 (433)
Q Consensus       161 ~~~~v~ViG~G~--~g~e~a~~l~~~g~~V~li~~~~~~~~~~-------------~~~~~~~~l~~~l~~~GV~v~~~~  225 (433)
                      .++++.|+|+++  ++.+++..+...+.+++++.+...+++..             ....+...+.+.+++.||++++++
T Consensus       156 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~G~~l~~~L~~~~~~~Gv~i~~~~  235 (574)
T PRK12842        156 PLKTITFIGMMFNSSNADLKHFFNATRSLTSFIYVAKRLATHLKDLALYRRGTQVTSGNALAARLAKSALDLGIPILTGT  235 (574)
T ss_pred             CcccccccceecccchHHHHHHHhhccchhHHHHHHHHHHhhHHHHhhccCCcccccHHHHHHHHHHHHHhCCCEEEeCC
Confidence            467889999988  89999999998888887765544433321             124577778888899999999999


Q ss_pred             eEEEEEecCCCcEEEEEeCC--Cc-EEECC-EEEEcccCccCh
Q 013952          226 VAVGFTTNADGEVKEVKLKD--GR-TLEAD-IVVVGVGGRPLI  264 (433)
Q Consensus       226 ~v~~i~~~~~g~~~~v~~~~--g~-~i~~d-~vi~a~G~~p~~  264 (433)
                      .++++.. +++++..|...+  ++ .+.++ .||+|+|..++.
T Consensus       236 ~v~~l~~-~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~~n  277 (574)
T PRK12842        236 PARELLT-EGGRVVGARVIDAGGERRITARRGVVLACGGFSHD  277 (574)
T ss_pred             EEEEEEe-eCCEEEEEEEEcCCceEEEEeCCEEEEcCCCccch
Confidence            9999986 467777776643  32 47786 799999976643

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=99.06  E-value=1.6e-09  Score=109.23  Aligned_cols=33  Identities=30%  Similarity=0.414  Sum_probs=30.7

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHc--CCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQ--GVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~--g~~~~~V~lie~~   40 (433)
                      .+||||||||.||++||.++++.  |.+   |+||||.
T Consensus        11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~---V~lieK~   45 (608)
T PRK06854         11 DTDILIIGGGMAGCGAAFEAKEWAPDLK---VLIVEKA   45 (608)
T ss_pred             EeCEEEECcCHHHHHHHHHHHHhCCCCe---EEEEECC
Confidence            47999999999999999999998  877   9999998

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.04  E-value=7.2e-10  Score=110.83  Aligned_cols=106  Identities=16%  Similarity=0.080  Sum_probs=77.9

Q ss_pred             CCCcEEEECCCHHHHHHHHH-------HHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEec
Q 013952          161 KNGKAVVVGGGYIGLELSAA-------LKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN  233 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~-------l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~  233 (433)
                      .++.++++|+++++++++..       +.+.+.+|++....+..... ....+...+.+.+++.||++++++++.++.. 
T Consensus       159 ~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~g~~~~~~L~~~~~~~gv~v~~~t~v~~l~~-  236 (557)
T PRK07843        159 VPLNMVVMQQDYVWLNLLKRHPRGVLRALKVGARTLWAKATGKNLLG-MGQALAAGLRIGLQRAGVPVLLNTPLTDLYV-  236 (557)
T ss_pred             ccccccccHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhccCCCccc-CcHHHHHHHHHHHHcCCCEEEeCCEEEEEEE-
Confidence            36678899999999998865       56666677665443333222 5778888899999999999999999999986 


Q ss_pred             CCCcEEEEEeC-CCc--EEECC-EEEEccc-CccChhhhh
Q 013952          234 ADGEVKEVKLK-DGR--TLEAD-IVVVGVG-GRPLISLFK  268 (433)
Q Consensus       234 ~~g~~~~v~~~-~g~--~i~~d-~vi~a~G-~~p~~~~~~  268 (433)
                      +++++..|... +++  .+.++ .||+|+| +.+|.++++
T Consensus       237 ~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~n~~m~~  276 (557)
T PRK07843        237 EDGRVTGVHAAESGEPQLIRARRGVILASGGFEHNEQMRA  276 (557)
T ss_pred             eCCEEEEEEEEeCCcEEEEEeceeEEEccCCcCcCHHHHH
Confidence            46777777653 343  47785 5888777 677766654

>TIGR00551 nadB L-aspartate oxidase

Probab=99.03  E-value=1.5e-09  Score=107.17  Aligned_cols=55  Identities=25%  Similarity=0.239  Sum_probs=40.4

Q ss_pred             CCCcEEeCCCCCCCCCCeEEcCcccc-ccccccCcccc-cccHHHHHHHHHHHHHHHhcc
Q 013952          274 NKGGIETDDFFKTSADDVYAVGDVAT-FPMKLYREMRR-VEHVDHARKSAEQAVKTIMAT  331 (433)
Q Consensus       274 ~~g~i~vd~~~~t~~~~vfa~Gd~~~-~~~~~~~~~~~-~~~~~~A~~~g~~aa~~i~~~  331 (433)
                      ..|+|.+|.+.||++||+||+|+|+. ...   |..+. -.+...+.-.|+.|++++...
T Consensus       332 t~GGi~vd~~~~t~I~GLyAaGE~a~~g~h---Ganrl~g~sl~~~~v~G~~Ag~~aa~~  388 (488)
T TIGR00551       332 TCGGISVDDHGRTTVPGLYAIGEVACTGLH---GANRLASNSLLECLVFGWSAAEDISRR  388 (488)
T ss_pred             ecCCEEECCCCcccCCCEEECccccccccC---cccccchhHHHHHHHHHHHHHHHHHhh
Confidence            56899999999999999999999974 322   21111 134566778889999888753

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PRK09897 hypothetical protein; Provisional

Probab=99.02  E-value=5.4e-09  Score=102.64  Aligned_cols=166  Identities=18%  Similarity=0.215  Sum_probs=90.6

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-C----CCCCCCCccccccCCCCCCCCC----Ccccc--------
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-V----APYERPALSKAYLFPEGTARLP----GFHVC--------   68 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~----~~~~~~~~~~~~~~~~~~~~~~----~~~~~--------   68 (433)
                      ++|+|||||++|+++|.+|.+.+. ..+|+|+|++ .    .+|.....+..++.......++    .+...        
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~-~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~   80 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQT-PLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSH   80 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCC-CCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHH
Confidence            589999999999999999998652 3569999996 2    2222211111111110000000    00000        


Q ss_pred             ---------------------cCCCCCCCC---HhHHHhCC--cEEEeCceEEEEECCCCE--EEeCC-CcEEecceEEE
Q 013952           69 ---------------------VGSGGERLL---PEWYKEKG--IELILSTEIVRADIASKT--LLSAT-GLIFKYQILVI  119 (433)
Q Consensus        69 ---------------------~~~~~~~~~---~~~~~~~~--v~~~~~~~v~~i~~~~~~--v~~~~-~~~~~~d~lvl  119 (433)
                                           .|......+   .+.+...|  +.++..++|+++...+..  +.+.+ +..+.+|+||+
T Consensus        81 ~~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVL  160 (534)
T PRK09897         81 LQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVI  160 (534)
T ss_pred             HHhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEE
Confidence                                 000000111   11122344  677778899999876654  44434 46799999999


Q ss_pred             ccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhC
Q 013952          120 ATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKIN  184 (433)
Q Consensus       120 AtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~  184 (433)
                      |||..+..+.    .+.  ...+  .+..... +   +....+.+|+|+|.|.++++.+..|...
T Consensus       161 AtGh~~p~~~----~~~--~~yi--~~pw~~~-~---~~~i~~~~V~I~GtGLt~iD~v~~Lt~~  213 (534)
T PRK09897        161 ATGHVWPDEE----EAT--RTYF--PSPWSGL-M---EAKVDACNVGIMGTSLSGLDAAMAVAIQ  213 (534)
T ss_pred             CCCCCCCCCC----hhh--cccc--CCCCcch-h---hcCCCCCeEEEECCCHHHHHHHHHHHhc
Confidence            9997432111    111  1111  1111111 1   1111468999999999999999998755

>PRK08275 putative oxidoreductase; Provisional

Probab=99.02  E-value=5.3e-09  Score=104.78  Aligned_cols=33  Identities=18%  Similarity=0.438  Sum_probs=29.8

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHc--CCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQ--GVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~--g~~~~~V~lie~~   40 (433)
                      .+||||||||.||++||.++++.  |.+   |+|+||.
T Consensus         9 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~---VilveK~   43 (554)
T PRK08275          9 ETDILVIGGGTAGPMAAIKAKERNPALR---VLLLEKA   43 (554)
T ss_pred             ecCEEEECcCHHHHHHHHHHHHhCCCCe---EEEEeCC
Confidence            47999999999999999999987  455   9999998

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=99.01  E-value=1.5e-08  Score=97.54  Aligned_cols=58  Identities=16%  Similarity=0.137  Sum_probs=47.7

Q ss_pred             CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccC
Q 013952          203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL  263 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~  263 (433)
                      +..+.+.+.+.+++.|++++++++|.++... ++. ..|.+.++ ++.+|.||+|+|....
T Consensus       148 ~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~-~~~-~~V~~~~g-~i~ad~vV~A~G~~s~  205 (393)
T PRK11728        148 YRAVAEAMAELIQARGGEIRLGAEVTALDEH-ANG-VVVRTTQG-EYEARTLINCAGLMSD  205 (393)
T ss_pred             HHHHHHHHHHHHHhCCCEEEcCCEEEEEEec-CCe-EEEEECCC-EEEeCEEEECCCcchH
Confidence            5688889999999999999999999999863 333 46777776 7999999999997653

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.99  E-value=4.8e-09  Score=110.61  Aligned_cols=33  Identities=24%  Similarity=0.496  Sum_probs=31.1

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      .+||+|||||.|||+||.++++.|.+   |+|++|.
T Consensus        13 ~~DVlVVG~G~AGl~AAl~Aa~~G~~---V~lleK~   45 (897)
T PRK13800         13 DCDVLVIGGGTAGTMAALTAAEHGAN---VLLLEKA   45 (897)
T ss_pred             ecCEEEECcCHHHHHHHHHHHHCCCe---EEEEecc
Confidence            57999999999999999999999887   9999998

>PRK10015 oxidoreductase; Provisional

Probab=98.99  E-value=4.9e-09  Score=101.62  Aligned_cols=123  Identities=15%  Similarity=0.227  Sum_probs=73.3

Q ss_pred             CCCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccc-------ccCCCC----C--CCCCC---
Q 013952            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKA-------YLFPEG----T--ARLPG---   64 (433)
Q Consensus         1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~-------~~~~~~----~--~~~~~---   64 (433)
                      |++.+||||||||||||++||+.|++.|++   |+|||+...+..+......       .+.+..    +  .....   
T Consensus         1 m~~~~~DViIVGgGpAG~~aA~~LA~~G~~---VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~   77 (429)
T PRK10015          1 MSDDKFDAIVVGAGVAGSVAALVMARAGLD---VLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKI   77 (429)
T ss_pred             CCccccCEEEECcCHHHHHHHHHHHhCCCe---EEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeE
Confidence            555679999999999999999999999998   9999998222221110000       000000    0  00000   


Q ss_pred             --------cccccCC----------C--CCCC----CHhHHHhCCcEEEeCceEEEEECCCCEEE--eCCCcEEecceEE
Q 013952           65 --------FHVCVGS----------G--GERL----LPEWYKEKGIELILSTEIVRADIASKTLL--SATGLIFKYQILV  118 (433)
Q Consensus        65 --------~~~~~~~----------~--~~~~----~~~~~~~~~v~~~~~~~v~~i~~~~~~v~--~~~~~~~~~d~lv  118 (433)
                              .......          .  ....    +.+.+++.|++++.++.|..+..++..+.  ..++.++.++.+|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI  157 (429)
T PRK10015         78 SFLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVI  157 (429)
T ss_pred             EEEeCCCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEE
Confidence                    0000000          0  0011    22334567999999989988876544432  3345679999999


Q ss_pred             EccCCCcc
Q 013952          119 IATGSTVL  126 (433)
Q Consensus       119 lAtG~~~~  126 (433)
                      +|+|....
T Consensus       158 ~AdG~~s~  165 (429)
T PRK10015        158 LADGVNSM  165 (429)
T ss_pred             EccCcchh
Confidence            99997544

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=98.98  E-value=3.2e-09  Score=102.94  Aligned_cols=123  Identities=22%  Similarity=0.380  Sum_probs=73.9

Q ss_pred             CCCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCC------------CC-CCCC---C
Q 013952            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPE------------GT-ARLP---G   64 (433)
Q Consensus         1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~------------~~-~~~~---~   64 (433)
                      |...+|||+||||||||++||+.|+++|++   |+|+|+...+..+.. .++.+...            .+ ....   .
T Consensus         1 m~~~~~DViIVGaGpAG~~aA~~La~~G~~---V~llEr~~~~g~k~~-~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~   76 (428)
T PRK10157          1 MSEDIFDAIIVGAGLAGSVAALVLAREGAQ---VLVIERGNSAGAKNV-TGGRLYAHSLEHIIPGFADSAPVERLITHEK   76 (428)
T ss_pred             CCcccCcEEEECcCHHHHHHHHHHHhCCCe---EEEEEcCCCCCCccc-ccceechhhHHHHhhhhhhcCcccceeeeee
Confidence            555579999999999999999999999998   999999822211111 01000000            00 0000   0


Q ss_pred             -----------cccccC---C-C--C--------CCCCHhHHHhCCcEEEeCceEEEEECCCCEE--EeCCCcEEecceE
Q 013952           65 -----------FHVCVG---S-G--G--------ERLLPEWYKEKGIELILSTEIVRADIASKTL--LSATGLIFKYQIL  117 (433)
Q Consensus        65 -----------~~~~~~---~-~--~--------~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v--~~~~~~~~~~d~l  117 (433)
                                 +.+...   . .  .        ...+.+.+++.|++++.++.|..+..++..+  ...++.++.++.+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~V  156 (428)
T PRK10157         77 LAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTV  156 (428)
T ss_pred             EEEEcCCCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEE
Confidence                       000000   0 0  0        0112233445899999999999886544432  3446678999999


Q ss_pred             EEccCCCccc
Q 013952          118 VIATGSTVLR  127 (433)
Q Consensus       118 vlAtG~~~~~  127 (433)
                      |.|+|.....
T Consensus       157 I~A~G~~s~l  166 (428)
T PRK10157        157 ILADGVNSIL  166 (428)
T ss_pred             EEEeCCCHHH
Confidence            9999986543

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=98.97  E-value=3e-08  Score=95.40  Aligned_cols=115  Identities=18%  Similarity=0.210  Sum_probs=67.2

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCC-ccc-cc----cCCCCCCCCCC--------cccccCC
Q 013952            7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPA-LSK-AY----LFPEGTARLPG--------FHVCVGS   71 (433)
Q Consensus         7 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~-~~~-~~----~~~~~~~~~~~--------~~~~~~~   71 (433)
                      ||+|||||+||+++|..|++.|++   |+|||+. .....+.. ... .+    +.........+        .......
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~---v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLR---VQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGT   77 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCe---EEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCC
Confidence            799999999999999999999987   9999988 32222110 000 00    00000000001        0000000


Q ss_pred             --------CCCCCCHhHHHhCCcEEEeCceEEEEECC-CC--EEEeCCCcEEecceEEEccCCCc
Q 013952           72 --------GGERLLPEWYKEKGIELILSTEIVRADIA-SK--TLLSATGLIFKYQILVIATGSTV  125 (433)
Q Consensus        72 --------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~-~~--~v~~~~~~~~~~d~lvlAtG~~~  125 (433)
                              .....+.+.+.+.+++++.+ .+..+... ..  .|.+.++.+++++.||.|+|..+
T Consensus        78 ~~~~i~~~~l~~~l~~~~~~~gv~~~~~-~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s  141 (388)
T TIGR01790        78 AYGSVDSTRLHEELLQKCPEGGVLWLER-KAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP  141 (388)
T ss_pred             ceeEEcHHHHHHHHHHHHHhcCcEEEcc-EEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence                    00111223334568888654 78777655 22  45666777899999999999866

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=98.97  E-value=1.5e-07  Score=89.70  Aligned_cols=115  Identities=18%  Similarity=0.313  Sum_probs=67.9

Q ss_pred             eEEEECCCHHHHHHHHHH--HHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCC-------CCCCCCcccccCCC----
Q 013952            7 KYVILGGGVSAGYAAREF--AKQGVKPGELAIISKE-VAPYERPALSKAYLFPEG-------TARLPGFHVCVGSG----   72 (433)
Q Consensus         7 dvvIIGgG~aGl~aA~~l--~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~----   72 (433)
                      ||||||||+||+++|.+|  ++.|.+   |+|||+. ..++.+.. ...++....       .+..+.........    
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~---Vllid~~~~~~~~~~~-tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~   76 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLS---VLLIDPKPKPPWPNDR-TWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRIL   76 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCE---EEEEcCCccccccCCc-ccccccccccchHHHHheecCceEEEeCCCceEE
Confidence            899999999999999999  555655   9999998 44332221 111111110       01111111111000    


Q ss_pred             ---C-----CCCCHhH----HHhCCcEEEeCceEEEEECCCC--EEEeCCCcEEecceEEEccCCCcc
Q 013952           73 ---G-----ERLLPEW----YKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVL  126 (433)
Q Consensus        73 ---~-----~~~~~~~----~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~  126 (433)
                         .     ...+.+.    +...++. ..+..|..|+....  .+.+.+|.+++++.||-|+|..+.
T Consensus        77 ~~~~Y~~i~~~~f~~~l~~~~~~~~~~-~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~  143 (374)
T PF05834_consen   77 IDYPYCMIDRADFYEFLLERAAAGGVI-RLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSP  143 (374)
T ss_pred             cccceEEEEHHHHHHHHHHHhhhCCeE-EEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccc
Confidence               0     0112222    2223444 45568999987776  577889999999999999996543

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PRK08071 L-aspartate oxidase; Provisional

Probab=98.96  E-value=5.4e-09  Score=103.49  Aligned_cols=55  Identities=24%  Similarity=0.215  Sum_probs=40.0

Q ss_pred             CCCcEEeCCCCCCCCCCeEEcCcccc-ccccccCcccc-cccHHHHHHHHHHHHHHHhcc
Q 013952          274 NKGGIETDDFFKTSADDVYAVGDVAT-FPMKLYREMRR-VEHVDHARKSAEQAVKTIMAT  331 (433)
Q Consensus       274 ~~g~i~vd~~~~t~~~~vfa~Gd~~~-~~~~~~~~~~~-~~~~~~A~~~g~~aa~~i~~~  331 (433)
                      ..|+|.+|.+.||++|++||+|+|++ ..+   |..+. -.+...+.-.|+.|++++...
T Consensus       331 ~~GGi~vd~~~~t~I~GLyAaGE~a~~g~h---Ganrl~g~sl~~~~v~G~~Ag~~aa~~  387 (510)
T PRK08071        331 LMGGVKTNLDGETSIPGLYAIGEVACTGVH---GANRLASNSLLEGLVFGKRAAEHILTK  387 (510)
T ss_pred             EcCCEEECCCCcccCCCeEEcccccccccC---CCcccchHHHHHHHHHHHHHHHHHHhh
Confidence            46899999999999999999999975 222   21111 134566777888888888654

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=98.96  E-value=9e-10  Score=104.65  Aligned_cols=60  Identities=23%  Similarity=0.336  Sum_probs=49.2

Q ss_pred             CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccCh
Q 013952          203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI  264 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~  264 (433)
                      +..+.+.+.+.+++.|++++++++|+++.. +++.+.+|.+.+|+ +.+|.||+|+|...+.
T Consensus       146 ~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~-~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~~  205 (358)
T PF01266_consen  146 PRRLIQALAAEAQRAGVEIRTGTEVTSIDV-DGGRVTGVRTSDGE-IRADRVVLAAGAWSPQ  205 (358)
T ss_dssp             HHHHHHHHHHHHHHTT-EEEESEEEEEEEE-ETTEEEEEEETTEE-EEECEEEE--GGGHHH
T ss_pred             ccchhhhhHHHHHHhhhhccccccccchhh-cccccccccccccc-cccceeEeccccccee
Confidence            678899999999999999999999999997 45666669999996 9999999999975433

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=98.95  E-value=5e-09  Score=100.72  Aligned_cols=121  Identities=20%  Similarity=0.289  Sum_probs=73.3

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccc--------cCCCC---CCCCCCccc------
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAY--------LFPEG---TARLPGFHV------   67 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~--------~~~~~---~~~~~~~~~------   67 (433)
                      +|||+||||||||++||+.|++.|++   |+|+|+...+..+++....+        .....   ...+.+...      
T Consensus         3 ~~DVvIVGaGPAGs~aA~~la~~G~~---VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~   79 (396)
T COG0644           3 EYDVVIVGAGPAGSSAARRLAKAGLD---VLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEK   79 (396)
T ss_pred             eeeEEEECCchHHHHHHHHHHHcCCe---EEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCc
Confidence            69999999999999999999999987   99999982222222111111        00000   000000000      


Q ss_pred             -ccCCC-----------CCCCCHhHHHhCCcEEEeCceEEEEECCCCE--E-EeCCCcEEecceEEEccCCCcccc
Q 013952           68 -CVGSG-----------GERLLPEWYKEKGIELILSTEIVRADIASKT--L-LSATGLIFKYQILVIATGSTVLRL  128 (433)
Q Consensus        68 -~~~~~-----------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~--v-~~~~~~~~~~d~lvlAtG~~~~~~  128 (433)
                       .+..+           ..+.+.+..++.|++++.++.+..+..++..  + +..++.+++++.+|.|+|......
T Consensus        80 ~~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s~l~  155 (396)
T COG0644          80 VAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNSALA  155 (396)
T ss_pred             eEEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcchHHH
Confidence             00000           0111333445689999999999988766542  2 223336899999999999765433

>PRK09077 L-aspartate oxidase; Provisional

Probab=98.88  E-value=9.9e-09  Score=102.32  Aligned_cols=55  Identities=22%  Similarity=0.243  Sum_probs=40.6

Q ss_pred             CCCcEEeCCCCCCCCCCeEEcCcccc-ccccccCcccc-cccHHHHHHHHHHHHHHHhcc
Q 013952          274 NKGGIETDDFFKTSADDVYAVGDVAT-FPMKLYREMRR-VEHVDHARKSAEQAVKTIMAT  331 (433)
Q Consensus       274 ~~g~i~vd~~~~t~~~~vfa~Gd~~~-~~~~~~~~~~~-~~~~~~A~~~g~~aa~~i~~~  331 (433)
                      ..|+|.+|.+.||++||+||+|+|+. ..+   |..+. -.+...+.-.|+.|++++...
T Consensus       352 t~GGi~vd~~~~t~I~GLyAaGE~a~~g~h---Ganrl~gnsl~~~~vfG~~Ag~~aa~~  408 (536)
T PRK09077        352 TCGGVMVDLHGRTDLDGLYAIGEVSYTGLH---GANRMASNSLLECLVYGRSAAEDILSR  408 (536)
T ss_pred             ecCCeeECCCCccccCCEEecccccccccC---CCccchhhhHHHHHHHHHHHHHHHHHh
Confidence            56899999999999999999999974 322   22111 134566777889999888754

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=98.88  E-value=2.6e-08  Score=100.07  Aligned_cols=56  Identities=23%  Similarity=0.261  Sum_probs=40.0

Q ss_pred             CCCcEEeCCCCCCCCCCeEEcCccccccccccCcccc-cccHHHHHHHHHHHHHHHhcc
Q 013952          274 NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRR-VEHVDHARKSAEQAVKTIMAT  331 (433)
Q Consensus       274 ~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~-~~~~~~A~~~g~~aa~~i~~~  331 (433)
                      ..|+|.||.+++|++|++||+|+|++..  .+|..+. -.+...|.-.|++|++++...
T Consensus       357 t~GGi~vd~~~~t~i~GLyAaGe~~~~g--~hGanrlggnsl~~a~v~Gr~Ag~~aa~~  413 (582)
T PRK09231        357 TMGGIETDQNCETRIKGLFAVGECSSVG--LHGANRLGSNSLAELVVFGRVAGEQAAER  413 (582)
T ss_pred             eCCCEEECCCCccccCCEEecccccccc--cCCCCCcchhHHHHHHHHHHHHHHHHHHh
Confidence            5789999999999999999999997521  1222111 134566777888888887654

>PRK07512 L-aspartate oxidase; Provisional

Probab=98.87  E-value=1.4e-08  Score=100.66  Aligned_cols=55  Identities=27%  Similarity=0.236  Sum_probs=39.2

Q ss_pred             CCCcEEeCCCCCCCCCCeEEcCcccc-ccccccCcccc-cccHHHHHHHHHHHHHHHhcc
Q 013952          274 NKGGIETDDFFKTSADDVYAVGDVAT-FPMKLYREMRR-VEHVDHARKSAEQAVKTIMAT  331 (433)
Q Consensus       274 ~~g~i~vd~~~~t~~~~vfa~Gd~~~-~~~~~~~~~~~-~~~~~~A~~~g~~aa~~i~~~  331 (433)
                      ..|+|.+|.+.+|++|++||+|+|+. ..   +|..+. -.+...+.-.|+.|++++...
T Consensus       340 t~GGi~vd~~~~t~I~GLyAaGE~a~~G~---hGanrl~gnsl~~~~v~G~~ag~~aa~~  396 (513)
T PRK07512        340 HMGGIAVDADGRSSLPGLWAAGEVASTGL---HGANRLASNSLLEAVVFAARAAEDIAGT  396 (513)
T ss_pred             EcCCEEECCCCccccCCEEecccccccCC---CcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            56899999999999999999999973 22   222111 124455667788888887654

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=98.87  E-value=3.6e-08  Score=91.28  Aligned_cols=99  Identities=16%  Similarity=0.207  Sum_probs=80.6

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc---c--------CCC----CCCHHHHHHHHHHHHhcCcEEEcCCeEE
Q 013952          164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPW---C--------MPR----LFTADIAAFYEGYYANKGIKIIKGTVAV  228 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~---~--------~~~----~~~~~~~~~l~~~l~~~GV~v~~~~~v~  228 (433)
                      +++|||+|+.|+++|..|.+.|.+|+++++.+.   +        .+.    ..+.++...+.+.+++.|+++++ ++|.
T Consensus         2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~   80 (300)
T TIGR01292         2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIY-EEVI   80 (300)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEE-EEEE
Confidence            589999999999999999999999999997541   1        121    12367888999999999999998 8899


Q ss_pred             EEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChh
Q 013952          229 GFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS  265 (433)
Q Consensus       229 ~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~  265 (433)
                      +++.  ++....+.+.+++++.+|.+|+|+|.+|+..
T Consensus        81 ~v~~--~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~  115 (300)
T TIGR01292        81 KVDL--SDRPFKVKTGDGKEYTAKAVIIATGASARKL  115 (300)
T ss_pred             EEEe--cCCeeEEEeCCCCEEEeCEEEECCCCCcccC
Confidence            9987  3334567777888999999999999988654

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK06847 hypothetical protein; Provisional

Probab=98.87  E-value=1.2e-08  Score=97.79  Aligned_cols=123  Identities=22%  Similarity=0.309  Sum_probs=74.6

Q ss_pred             CCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-C-CCCCCCC-cc---------ccc----------------
Q 013952            2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-V-APYERPA-LS---------KAY----------------   53 (433)
Q Consensus         2 m~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~-~~~~~~~-~~---------~~~----------------   53 (433)
                      |.+.+||+|||||++|+++|..|++.|++   |+|+|+. . ....... +.         -++                
T Consensus         1 m~~~~~V~IVGaG~aGl~~A~~L~~~g~~---v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~   77 (375)
T PRK06847          1 MAAVKKVLIVGGGIGGLSAAIALRRAGIA---VDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDL   77 (375)
T ss_pred             CCCcceEEEECCCHHHHHHHHHHHhCCCC---EEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEE
Confidence            45678999999999999999999999987   9999988 2 1111000 00         000                


Q ss_pred             cCCCCC--CCCCCccc---ccC-------CCCCCCCHhHHHhCCcEEEeCceEEEEECCCC--EEEeCCCcEEecceEEE
Q 013952           54 LFPEGT--ARLPGFHV---CVG-------SGGERLLPEWYKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVI  119 (433)
Q Consensus        54 ~~~~~~--~~~~~~~~---~~~-------~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvl  119 (433)
                      +.....  ...+....   ...       ......+.+.+.+.+++++.++.+..++.+..  .+.+.++.++.+|.||.
T Consensus        78 ~~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~  157 (375)
T PRK06847         78 FDPDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVG  157 (375)
T ss_pred             ECCCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEE
Confidence            000000  00000000   000       00011223334457899999999998876554  45667888899999999


Q ss_pred             ccCCCccc
Q 013952          120 ATGSTVLR  127 (433)
Q Consensus       120 AtG~~~~~  127 (433)
                      |+|..+..
T Consensus       158 AdG~~s~~  165 (375)
T PRK06847        158 ADGLYSKV  165 (375)
T ss_pred             CcCCCcch
Confidence            99976543

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=98.86  E-value=8.5e-09  Score=92.36  Aligned_cols=117  Identities=19%  Similarity=0.202  Sum_probs=67.9

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCC-----------CCC------CCccc
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGT-----------ARL------PGFHV   67 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~-----------~~~------~~~~~   67 (433)
                      .+||+||||||||++||++|++.|++   |+|+|+...+-.. ...++.+.....           ..+      ++...
T Consensus        25 ~~DVvIVGgGpAGl~AA~~la~~G~~---V~liEk~~~~Ggg-~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~  100 (257)
T PRK04176         25 EVDVAIVGAGPSGLTAAYYLAKAGLK---VAVFERKLSFGGG-MWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYV  100 (257)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCCCe---EEEEecCCCCCCc-cccCccccccccchHHHHHHHHHCCCCceeecCccee
Confidence            58999999999999999999999988   9999998211111 011111111000           000      00000


Q ss_pred             ccCCCCCCCCHhHHHhCCcEEEeCceEEEEECCCC-EE---EeC-----------CCcEEecceEEEccCCCc
Q 013952           68 CVGSGGERLLPEWYKEKGIELILSTEIVRADIASK-TL---LSA-----------TGLIFKYQILVIATGSTV  125 (433)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~-~v---~~~-----------~~~~~~~d~lvlAtG~~~  125 (433)
                      .........+.+...+.|++++.++.+.++..++. .+   ...           +..++.++.+|+|||...
T Consensus       101 vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a  173 (257)
T PRK04176        101 ADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDA  173 (257)
T ss_pred             ccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCc
Confidence            00000011233344568999999988888764332 22   111           224789999999999654

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=98.85  E-value=1.8e-08  Score=101.06  Aligned_cols=56  Identities=25%  Similarity=0.262  Sum_probs=39.9

Q ss_pred             CCCcEEeCCCCCCCCCCeEEcCccccccccccCcccc-cccHHHHHHHHHHHHHHHhcc
Q 013952          274 NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRR-VEHVDHARKSAEQAVKTIMAT  331 (433)
Q Consensus       274 ~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~-~~~~~~A~~~g~~aa~~i~~~  331 (433)
                      ..|+|.+|.+.+|++|++||+|+|+...  .+|..+. -.+...+.-.|+.|++++...
T Consensus       356 ~~GGi~~d~~~~t~i~GLyAaGe~a~~G--~hGanrl~g~sl~~~~v~G~~ag~~aa~~  412 (580)
T TIGR01176       356 TMGGIETDINCETRIKGLFAVGECASVG--LHGANRLGSNSLAELVVFGRRAGEAAAER  412 (580)
T ss_pred             cCCCeeECcCcccccCCeEeeecccccC--cCCCccccchhHHHHHHHHHHHHHHHHHh
Confidence            5689999999999999999999997421  1222111 134566777888888887653

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PRK07190 hypothetical protein; Provisional

Probab=98.84  E-value=1.5e-08  Score=99.67  Aligned_cols=124  Identities=21%  Similarity=0.219  Sum_probs=76.1

Q ss_pred             CCCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-C-CCCCCCC-cc---------cccc----CCCCC-----
Q 013952            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-V-APYERPA-LS---------KAYL----FPEGT-----   59 (433)
Q Consensus         1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~-~~~~~~~-~~---------~~~~----~~~~~-----   59 (433)
                      |.+..+||+||||||+|+++|..|+++|.+   |+|||+. . ....+.. +.         .+++    .....     
T Consensus         1 m~~~~~dVlIVGAGPaGL~lA~~Lar~Gi~---V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~   77 (487)
T PRK07190          1 MSTQVTDVVIIGAGPVGLMCAYLGQLCGLN---TVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSS   77 (487)
T ss_pred             CCCccceEEEECCCHHHHHHHHHHHHcCCC---EEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEE
Confidence            666678999999999999999999999988   9999998 2 1122210 00         0000    00000     


Q ss_pred             ----CC-----------CCCcc----cccCC-CCCCCCHhHHHhCCcEEEeCceEEEEECCCC--EEEeCCCcEEecceE
Q 013952           60 ----AR-----------LPGFH----VCVGS-GGERLLPEWYKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQIL  117 (433)
Q Consensus        60 ----~~-----------~~~~~----~~~~~-~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~l  117 (433)
                          ..           .+...    ...+. .....+.+.+.+.|+++..+++++.+..++.  .+.+.+++++++++|
T Consensus        78 ~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~v  157 (487)
T PRK07190         78 VWANGKFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYV  157 (487)
T ss_pred             EecCCceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEE
Confidence                00           00000    00000 0001122344567999999999999876554  345567778999999


Q ss_pred             EEccCCCccc
Q 013952          118 VIATGSTVLR  127 (433)
Q Consensus       118 vlAtG~~~~~  127 (433)
                      |.|+|.....
T Consensus       158 VgADG~~S~v  167 (487)
T PRK07190        158 IGADGSRSFV  167 (487)
T ss_pred             EECCCCCHHH
Confidence            9999986643

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=98.82  E-value=1.8e-08  Score=93.04  Aligned_cols=117  Identities=24%  Similarity=0.381  Sum_probs=69.2

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCC--Ccccc---cc----------------CCCCCC--C
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERP--ALSKA---YL----------------FPEGTA--R   61 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~--~~~~~---~~----------------~~~~~~--~   61 (433)
                      |||+|||||++|+++|..|++.|.+   |+|+|+. ......+  .+...   .+                ......  .
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~~g~~---v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   77 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLADKGLR---VLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVE   77 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCe---EEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEE
Confidence            6999999999999999999999987   9999999 3211000  00000   00                000000  0


Q ss_pred             CC---Cccccc-CCCCCCCCHhHHHhCCcEEEeCceEEEEECCCCE--EEeCC-CcEEecceEEEccCCCc
Q 013952           62 LP---GFHVCV-GSGGERLLPEWYKEKGIELILSTEIVRADIASKT--LLSAT-GLIFKYQILVIATGSTV  125 (433)
Q Consensus        62 ~~---~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~~~~-~~~~~~d~lvlAtG~~~  125 (433)
                      .+   .....+ .......+.+.+.+.+++++.++++..+..++..  +.+.+ +.++++|++|.|+|...
T Consensus        78 ~~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s  148 (295)
T TIGR02032        78 IPIETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRS  148 (295)
T ss_pred             eccCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcch
Confidence            00   000000 0001122334455679999999999887655543  33333 45799999999999754

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=98.82  E-value=1.1e-08  Score=102.45  Aligned_cols=31  Identities=35%  Similarity=0.602  Sum_probs=28.6

Q ss_pred             eEEEECCCHHHHHHHHHHH----HcCCCCCcEEEEcCC
Q 013952            7 KYVILGGGVSAGYAAREFA----KQGVKPGELAIISKE   40 (433)
Q Consensus         7 dvvIIGgG~aGl~aA~~l~----~~g~~~~~V~lie~~   40 (433)
                      ||||||||.|||+||.+++    +.|.+   |+|++|.
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~---VilieK~   35 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDKKGLK---IVLVEKA   35 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhCCCe---EEEEEcc
Confidence            7999999999999999998    56776   9999998

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=98.81  E-value=2.4e-07  Score=89.33  Aligned_cols=63  Identities=16%  Similarity=0.115  Sum_probs=54.7

Q ss_pred             CCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccCh
Q 013952          202 FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI  264 (433)
Q Consensus       202 ~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~  264 (433)
                      -..++.+.+.+.++..|.+++++++|.+|..++++++..|++.+|+++.|+.||......|..
T Consensus       230 G~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p~~  292 (443)
T PTZ00363        230 GLGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFPDK  292 (443)
T ss_pred             CHHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECccccccc
Confidence            346788999999999999999999999998755677889999999999999999988877753

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=98.81  E-value=1.9e-08  Score=101.28  Aligned_cols=101  Identities=18%  Similarity=0.166  Sum_probs=68.1

Q ss_pred             CCcEEEECCCHHH-HHHHHHHHhCCCeEEEEccCCccCC-------------CCCCHHHHHHHHHHHHhcCcEEEcCCeE
Q 013952          162 NGKAVVVGGGYIG-LELSAALKINNIDVSMVYPEPWCMP-------------RLFTADIAAFYEGYYANKGIKIIKGTVA  227 (433)
Q Consensus       162 ~~~v~ViG~G~~g-~e~a~~l~~~g~~V~li~~~~~~~~-------------~~~~~~~~~~l~~~l~~~GV~v~~~~~v  227 (433)
                      ..++.++|++.++ .+++..+...+..+.+..+..++++             ......+...+.+.+++.|+++++++++
T Consensus       161 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~a~~~Gv~i~~~t~v  240 (581)
T PRK06134        161 LRETSFMGMPIMAGADLAAFLNPTRSFRAFLHVARRFARHLIDLARHGRGMHLVNGNALVARLLKSAEDLGVRIWESAPA  240 (581)
T ss_pred             cccccccccccccHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHhCCCEEEcCCEE
Confidence            4566778877665 6777776665555444332221111             0124567788889999999999999999


Q ss_pred             EEEEecCCCcEEEEEeC--CCc-EEEC-CEEEEcccCccC
Q 013952          228 VGFTTNADGEVKEVKLK--DGR-TLEA-DIVVVGVGGRPL  263 (433)
Q Consensus       228 ~~i~~~~~g~~~~v~~~--~g~-~i~~-d~vi~a~G~~p~  263 (433)
                      +++.. +++++..|...  ++. ++.+ +.||+|+|...+
T Consensus       241 ~~l~~-~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~  279 (581)
T PRK06134        241 RELLR-EDGRVAGAVVETPGGLQEIRARKGVVLAAGGFPH  279 (581)
T ss_pred             EEEEE-eCCEEEEEEEEECCcEEEEEeCCEEEEcCCCccc
Confidence            99876 36777666553  332 5788 999999995543

>PRK06834 hypothetical protein; Provisional

Probab=98.80  E-value=3.3e-08  Score=97.36  Aligned_cols=122  Identities=26%  Similarity=0.383  Sum_probs=75.0

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCC--CCC-Cccc-------------cccCCCCCCCCCCc--
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPY--ERP-ALSK-------------AYLFPEGTARLPGF--   65 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~--~~~-~~~~-------------~~~~~~~~~~~~~~--   65 (433)
                      .+||+||||||+|+++|..|++.|++   |+|+|+. ....  .|. .++.             .+...........+  
T Consensus         3 ~~dVlIVGaGp~Gl~lA~~La~~G~~---v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~   79 (488)
T PRK06834          3 EHAVVIAGGGPTGLMLAGELALAGVD---VAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAA   79 (488)
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeee
Confidence            68999999999999999999999998   9999998 3221  111 0100             00000000000000  


Q ss_pred             -ccccC---C--C---------CCCCCHhHHHhCCcEEEeCceEEEEECCCC--EEEeCCCcEEecceEEEccCCCcccc
Q 013952           66 -HVCVG---S--G---------GERLLPEWYKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRL  128 (433)
Q Consensus        66 -~~~~~---~--~---------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~~~  128 (433)
                       .....   .  .         ....+.+.+++.+++++.+++++.+..++.  .+++.++.++++|+||.|.|......
T Consensus        80 ~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~vR  159 (488)
T PRK06834         80 TRLDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSLVR  159 (488)
T ss_pred             EecccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCCcH
Confidence             00000   0  0         001122334567999999999999877655  34556777899999999999876544


Q ss_pred             C
Q 013952          129 T  129 (433)
Q Consensus       129 ~  129 (433)
                      .
T Consensus       160 ~  160 (488)
T PRK06834        160 K  160 (488)
T ss_pred             h
Confidence            3

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=98.80  E-value=4e-07  Score=81.62  Aligned_cols=172  Identities=17%  Similarity=0.122  Sum_probs=110.4

Q ss_pred             HHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCC------------------------------------
Q 013952          157 IKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR------------------------------------  200 (433)
Q Consensus       157 ~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~------------------------------------  200 (433)
                      +.+.....|+|||+|+.|+-+|..|++.|.+|.++++.+.+...                                    
T Consensus        20 ~~~~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~   99 (257)
T PRK04176         20 LLDYLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLY   99 (257)
T ss_pred             HHHhccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcce
Confidence            33334568999999999999999999999999999876442110                                    


Q ss_pred             -CCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC-----------CCcEEECCEEEEcccCccChh-hh
Q 013952          201 -LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK-----------DGRTLEADIVVVGVGGRPLIS-LF  267 (433)
Q Consensus       201 -~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~-----------~g~~i~~d~vi~a~G~~p~~~-~~  267 (433)
                       ....++...+.+..++.|++++.++.+.++...+++++..+...           +...+.++.||.|+|...... .+
T Consensus       100 ~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~~~l  179 (257)
T PRK04176        100 VADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVVSVL  179 (257)
T ss_pred             eccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHHHHH
Confidence             01234556677777889999999999999876444466666543           124799999999999654332 22


Q ss_pred             hc-----cccc-CCCc--------EEeCCCCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccC
Q 013952          268 KG-----QVAE-NKGG--------IETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE  332 (433)
Q Consensus       268 ~~-----~~~~-~~g~--------i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~  332 (433)
                      ..     .... ..+.        .+|+..-+ -+|++|++|=.+....   |.++--+....=...|+.||+.|+..+
T Consensus       180 ~~~~~~~~~~~~g~~~~~~~~~e~~v~~~t~~-~~~g~~~~gm~~~~~~---~~~rmg~~fg~m~~sg~~~a~~~~~~~  254 (257)
T PRK04176        180 ARKGPELGIEVPGEKSMWAERGEKLVVENTGE-VYPGLYVAGMAANAVH---GLPRMGPIFGGMLLSGKKVAELILEKL  254 (257)
T ss_pred             HHHcCCcccccCCccccccCchHHHHHhcCCe-EcCCEEEeehhhhhhc---CCCccCchhHhHHHhHHHHHHHHHHHh
Confidence            11     1111 0111        11222222 3799999997765432   222222334434468899998887654

>TIGR00292 thiazole biosynthesis enzyme

Probab=98.80  E-value=2.6e-08  Score=88.90  Aligned_cols=116  Identities=21%  Similarity=0.195  Sum_probs=67.8

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCC------CCCC--CCcccc-cCC----
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEG------TARL--PGFHVC-VGS----   71 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~------~~~~--~~~~~~-~~~----   71 (433)
                      .+||+||||||+|++||++|+++|++   |+|+|++..+-.. ....+.+.+..      ...+  .+.++. .+.    
T Consensus        21 ~~DVvIVGgGpAGL~aA~~la~~G~~---V~vlEk~~~~Ggg-~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~   96 (254)
T TIGR00292        21 ESDVIIVGAGPSGLTAAYYLAKNGLK---VCVLERSLAFGGG-SWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVV   96 (254)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCCCcc-ccCCCcceecccccchHHHHHHHCCCCeeeccCceEE
Confidence            58999999999999999999999987   9999999211110 10111111000      0000  000100 000    


Q ss_pred             ----CCCCCCHhHHHhCCcEEEeCceEEEEECCCC--E---EEeC-----------CCcEEecceEEEccCCC
Q 013952           72 ----GGERLLPEWYKEKGIELILSTEIVRADIASK--T---LLSA-----------TGLIFKYQILVIATGST  124 (433)
Q Consensus        72 ----~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~---v~~~-----------~~~~~~~d~lvlAtG~~  124 (433)
                          .....+.+...+.+++++.++.+.++..++.  .   |.+.           +..+++++.+|.|||..
T Consensus        97 ~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~  169 (254)
T TIGR00292        97 ADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHD  169 (254)
T ss_pred             eeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCC
Confidence                0111223334568999999999988765433  2   2221           12468999999999964

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=98.78  E-value=2e-08  Score=96.74  Aligned_cols=124  Identities=16%  Similarity=0.209  Sum_probs=74.8

Q ss_pred             CC-CCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCC-------cc---------ccccCCCC---C
Q 013952            1 MA-EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPA-------LS---------KAYLFPEG---T   59 (433)
Q Consensus         1 Mm-~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~-------~~---------~~~~~~~~---~   59 (433)
                      || +..+||+|||||++|+++|..|+++|++   |+|+|+. ...+....       +.         -+++..-.   .
T Consensus         1 ~~~~~~~dV~IvGaG~aGl~~A~~La~~G~~---v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~   77 (392)
T PRK08773          1 MSRRSRRDAVIVGGGVVGAACALALADAGLS---VALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARA   77 (392)
T ss_pred             CCCCCCCCEEEECcCHHHHHHHHHHhcCCCE---EEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhC
Confidence            44 3468999999999999999999999987   9999997 32211000       00         00000000   0


Q ss_pred             CCCCCcc---------ccc-----CCCC----------CCCCHhHHHhCCcEEEeCceEEEEECCCC--EEEeCCCcEEe
Q 013952           60 ARLPGFH---------VCV-----GSGG----------ERLLPEWYKEKGIELILSTEIVRADIASK--TLLSATGLIFK  113 (433)
Q Consensus        60 ~~~~~~~---------~~~-----~~~~----------~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~  113 (433)
                      ..+....         ..+     +...          ...+.+.+++.++++..++.++++..++.  ++++.++.++.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~  157 (392)
T PRK08773         78 QPYRRMRVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLE  157 (392)
T ss_pred             CcccEEEEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEE
Confidence            0000000         000     0000          01122234457999999999998876554  35567778899


Q ss_pred             cceEEEccCCCccc
Q 013952          114 YQILVIATGSTVLR  127 (433)
Q Consensus       114 ~d~lvlAtG~~~~~  127 (433)
                      +|.||.|+|.....
T Consensus       158 a~~vV~AdG~~S~v  171 (392)
T PRK08773        158 AALAIAADGAASTL  171 (392)
T ss_pred             eCEEEEecCCCchH
Confidence            99999999987643

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=98.78  E-value=9.5e-08  Score=93.82  Aligned_cols=55  Identities=20%  Similarity=0.229  Sum_probs=45.6

Q ss_pred             CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013952          203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR  261 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~  261 (433)
                      +..+...+.+.+++.|++++.++.|.+++.  ++ ...|.+.+| ++.||.||+|+|..
T Consensus       182 P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~--~~-~~~v~t~~g-~v~A~~VV~Atga~  236 (460)
T TIGR03329       182 PGLLVRGLRRVALELGVEIHENTPMTGLEE--GQ-PAVVRTPDG-QVTADKVVLALNAW  236 (460)
T ss_pred             HHHHHHHHHHHHHHcCCEEECCCeEEEEee--CC-ceEEEeCCc-EEECCEEEEccccc
Confidence            567888899999999999999999999975  22 245777777 69999999999954

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=98.78  E-value=1.8e-07  Score=89.20  Aligned_cols=53  Identities=23%  Similarity=0.307  Sum_probs=42.3

Q ss_pred             CHHHHHHHHHHHHhc-CcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013952          203 TADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP  262 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~-GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p  262 (433)
                      +..+...+.+.+.+. |++++.+++|.+++.  +    .|.+.+| .+.||.||+|+|...
T Consensus       144 p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~--~----~v~t~~g-~i~a~~VV~A~G~~s  197 (365)
T TIGR03364       144 PREAIPALAAYLAEQHGVEFHWNTAVTSVET--G----TVRTSRG-DVHADQVFVCPGADF  197 (365)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEeCCeEEEEec--C----eEEeCCC-cEEeCEEEECCCCCh
Confidence            566777887777765 999999999999964  2    5777777 478999999999754

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>TIGR02734 crtI_fam phytoene desaturase

Probab=98.78  E-value=3.9e-08  Score=97.87  Aligned_cols=57  Identities=23%  Similarity=0.283  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013952          204 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR  261 (433)
Q Consensus       204 ~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~  261 (433)
                      ..+.+.+.+.+++.|+++++++.|.+|.. +++++..|++.+|+++.+|.||++++..
T Consensus       219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~-~~~~~~~V~~~~g~~~~ad~VI~a~~~~  275 (502)
T TIGR02734       219 GALVAAMAKLAEDLGGELRLNAEVIRIET-EGGRATAVHLADGERLDADAVVSNADLH  275 (502)
T ss_pred             HHHHHHHHHHHHHCCCEEEECCeEEEEEe-eCCEEEEEEECCCCEEECCEEEECCcHH
Confidence            57888999999999999999999999987 3566678999999889999999998854

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PRK07395 L-aspartate oxidase; Provisional

Probab=98.78  E-value=2.8e-08  Score=99.04  Aligned_cols=53  Identities=26%  Similarity=0.172  Sum_probs=36.9

Q ss_pred             CCCcEEeCCCCCCCCCCeEEcCcccc-ccccccCccccc-ccHHHHHHHHHHHHHHHh
Q 013952          274 NKGGIETDDFFKTSADDVYAVGDVAT-FPMKLYREMRRV-EHVDHARKSAEQAVKTIM  329 (433)
Q Consensus       274 ~~g~i~vd~~~~t~~~~vfa~Gd~~~-~~~~~~~~~~~~-~~~~~A~~~g~~aa~~i~  329 (433)
                      ..|+|.+|.+.||++||+||+|+|+. +.   +|..+.. .+...+.--|+.+++++.
T Consensus       346 ~~GGi~vd~~~~t~I~GLyAaGE~a~~G~---hGanRL~gnsl~e~lvfG~~a~~~~~  400 (553)
T PRK07395        346 WMGGVVTDLNNQTSIPGLYAVGETASTGV---HGANRLASNSLLECLVFAAQLAQLEL  400 (553)
T ss_pred             cCCCeeECCCCcccCCCEEECccccccCC---CcccchHHHHHHHHHHHHHHHHHHHH
Confidence            56899999999999999999999974 22   2221111 234455556778887774

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=98.77  E-value=6.5e-07  Score=86.73  Aligned_cols=58  Identities=28%  Similarity=0.362  Sum_probs=46.5

Q ss_pred             CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013952          203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR  261 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~  261 (433)
                      +..+...+.+.+++.|++++.+++|.++...+++.+..|.+.+| .+.++.||+|+|..
T Consensus       182 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~  239 (407)
T TIGR01373       182 HDAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGH  239 (407)
T ss_pred             HHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChh
Confidence            45666777888899999999999999997534566667888887 69999998887753

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=98.77  E-value=4.6e-07  Score=89.32  Aligned_cols=64  Identities=14%  Similarity=0.149  Sum_probs=49.3

Q ss_pred             CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC--CC--cEEECCEEEEccc-CccChhhh
Q 013952          203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK--DG--RTLEADIVVVGVG-GRPLISLF  267 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~--~g--~~i~~d~vi~a~G-~~p~~~~~  267 (433)
                      ...+...+.+.+++.|+++++++++.++.. +++++..+...  ++  ..+.++.||+|+| +..|.+++
T Consensus       130 g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~-~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~~n~~~~  198 (466)
T PRK08274        130 GKALVNALYRSAERLGVEIRYDAPVTALEL-DDGRFVGARAGSAAGGAERIRAKAVVLAAGGFESNREWL  198 (466)
T ss_pred             HHHHHHHHHHHHHHCCCEEEcCCEEEEEEe-cCCeEEEEEEEccCCceEEEECCEEEECCCCCCCCHHHH
Confidence            356778888889999999999999999987 46777777663  23  3689999999999 44444444

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=98.76  E-value=1.8e-07  Score=91.30  Aligned_cols=90  Identities=14%  Similarity=0.125  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHhCCCeEEEEccCCcc--CCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEec-CC--CcEEEEEeC-C
Q 013952          172 YIGLELSAALKINNIDVSMVYPEPWC--MPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN-AD--GEVKEVKLK-D  245 (433)
Q Consensus       172 ~~g~e~a~~l~~~g~~V~li~~~~~~--~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~-~~--g~~~~v~~~-~  245 (433)
                      .++.|+...+.+.=..+.-+.....+  ....-.+.+...+.+.++++||+|+++++|+++..+ ++  +++.++... +
T Consensus       192 hSA~E~rry~~rf~~~~~~l~~~s~l~ft~ynqyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~  271 (576)
T PRK13977        192 HSALEMRRYMHRFIHHIGGLPDLSGLKFTKYNQYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRN  271 (576)
T ss_pred             hHHHHHHHHHHHHHHhhccCCccccccCCCCCchhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeC
Confidence            57889988887652222111111111  111123788899999999999999999999999873 22  567777774 2


Q ss_pred             Cc-----EEECCEEEEcccCc
Q 013952          246 GR-----TLEADIVVVGVGGR  261 (433)
Q Consensus       246 g~-----~i~~d~vi~a~G~~  261 (433)
                      |+     ..+.|.||+++|.-
T Consensus       272 ~~~~~I~l~~~DlVivTnGs~  292 (576)
T PRK13977        272 GKEETIDLTEDDLVFVTNGSI  292 (576)
T ss_pred             CceeEEEecCCCEEEEeCCcC
Confidence            32     35689999999953

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=98.76  E-value=2.2e-07  Score=86.26  Aligned_cols=86  Identities=20%  Similarity=0.149  Sum_probs=65.8

Q ss_pred             HHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013952          181 LKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG  260 (433)
Q Consensus       181 l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~  260 (433)
                      +...+....++....+-+....-+.+.+.+.+.+++.|++++++++|..++. +++.+..+.+.+|.++++|.||+|+|+
T Consensus       150 ~~aa~a~~eil~~~~rHiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~-~~~~~~~v~~~~g~~i~~~~vvlA~Gr  228 (486)
T COG2509         150 FRAAGAGEEILPIYQRHIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEI-EDNEVLGVKLTKGEEIEADYVVLAPGR  228 (486)
T ss_pred             HHHhCCCceeeeccccccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEe-cCCceEEEEccCCcEEecCEEEEccCc
Confidence            3344544444433323333335678999999999999999999999999987 566678899999999999999999999


Q ss_pred             ccChhhh
Q 013952          261 RPLISLF  267 (433)
Q Consensus       261 ~p~~~~~  267 (433)
                      ....++-
T Consensus       229 sg~dw~~  235 (486)
T COG2509         229 SGRDWFE  235 (486)
T ss_pred             chHHHHH
Confidence            8776543

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=98.74  E-value=4.5e-07  Score=87.04  Aligned_cols=56  Identities=20%  Similarity=0.233  Sum_probs=45.5

Q ss_pred             CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013952          203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR  261 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~  261 (433)
                      +..+.+.+.+.+++.|++++.+++|.++..+ ++. ..|.+.++ ++.+|.||+|+|..
T Consensus       144 p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~-~~~-~~v~~~~~-~i~a~~vV~aaG~~  199 (380)
T TIGR01377       144 AEKALRALQELAEAHGATVRDGTKVVEIEPT-ELL-VTVKTTKG-SYQANKLVVTAGAW  199 (380)
T ss_pred             HHHHHHHHHHHHHHcCCEEECCCeEEEEEec-CCe-EEEEeCCC-EEEeCEEEEecCcc
Confidence            5677888888889999999999999999872 333 45777666 79999999999964

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK09126 hypothetical protein; Provisional

Probab=98.74  E-value=7.8e-08  Score=92.68  Aligned_cols=124  Identities=19%  Similarity=0.235  Sum_probs=73.9

Q ss_pred             CCCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCC-CCCCccc---------------ccc---CCCCCC
Q 013952            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPY-ERPALSK---------------AYL---FPEGTA   60 (433)
Q Consensus         1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~-~~~~~~~---------------~~~---~~~~~~   60 (433)
                      ||  ++||+||||||+|+++|..|+++|++   |+|+|+. .... ..+....               +++   ......
T Consensus         1 ~~--~~dviIvGgG~aGl~~A~~L~~~G~~---v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~   75 (392)
T PRK09126          1 MM--HSDIVVVGAGPAGLSFARSLAGSGLK---VTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEIS   75 (392)
T ss_pred             CC--cccEEEECcCHHHHHHHHHHHhCCCc---EEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCC
Confidence            67  68999999999999999999999998   9999998 3110 0000000               000   000000


Q ss_pred             CCCCcc---------cccCC-----CCC----------CCCHhHH-HhCCcEEEeCceEEEEECCCC--EEEeCCCcEEe
Q 013952           61 RLPGFH---------VCVGS-----GGE----------RLLPEWY-KEKGIELILSTEIVRADIASK--TLLSATGLIFK  113 (433)
Q Consensus        61 ~~~~~~---------~~~~~-----~~~----------~~~~~~~-~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~  113 (433)
                      ......         ..+..     ...          ..+.+.+ +..+++++.++.+..+..++.  .|.+.++.++.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~  155 (392)
T PRK09126         76 PLRDAKVLNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLT  155 (392)
T ss_pred             ccceEEEEcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEE
Confidence            000000         00000     000          0011111 235899999999998876544  45667888999


Q ss_pred             cceEEEccCCCccccC
Q 013952          114 YQILVIATGSTVLRLT  129 (433)
Q Consensus       114 ~d~lvlAtG~~~~~~~  129 (433)
                      +|.+|.|.|.......
T Consensus       156 a~~vI~AdG~~S~vr~  171 (392)
T PRK09126        156 ARLLVAADSRFSATRR  171 (392)
T ss_pred             eCEEEEeCCCCchhhH
Confidence            9999999998665443

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.74  E-value=3.6e-08  Score=94.86  Aligned_cols=37  Identities=27%  Similarity=0.482  Sum_probs=35.0

Q ss_pred             CCCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ||++.+||+|||||++|+++|..|++.|.+   |+|+|+.
T Consensus         3 ~~~~~~dViIVGaG~~Gl~~A~~L~~~G~~---v~liE~~   39 (388)
T PRK07494          3 MEKEHTDIAVIGGGPAGLAAAIALARAGAS---VALVAPE   39 (388)
T ss_pred             CCCCCCCEEEECcCHHHHHHHHHHhcCCCe---EEEEeCC
Confidence            777889999999999999999999999987   9999998

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=98.74  E-value=4.3e-07  Score=88.28  Aligned_cols=58  Identities=21%  Similarity=0.262  Sum_probs=46.7

Q ss_pred             CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013952          203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP  262 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p  262 (433)
                      +..+...+.+.+++.|++++++++|++++. .++.+..+.+.++ ++.+|.||+|+|...
T Consensus       200 p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~-~~~~~~~v~t~~~-~~~a~~VV~a~G~~~  257 (416)
T PRK00711        200 CQLFTQRLAAMAEQLGVKFRFNTPVDGLLV-EGGRITGVQTGGG-VITADAYVVALGSYS  257 (416)
T ss_pred             HHHHHHHHHHHHHHCCCEEEcCCEEEEEEe-cCCEEEEEEeCCc-EEeCCEEEECCCcch
Confidence            457778888888999999999999999986 3444556776655 799999999999754

>PRK06184 hypothetical protein; Provisional

Probab=98.74  E-value=5.5e-08  Score=96.71  Aligned_cols=121  Identities=22%  Similarity=0.225  Sum_probs=72.1

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCC--CCCCC-cc---------ccc----------------cC
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAP--YERPA-LS---------KAY----------------LF   55 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~--~~~~~-~~---------~~~----------------~~   55 (433)
                      +++||+||||||+||++|..|+++|++   |+|+|+...+  ..+.. +.         -++                +.
T Consensus         2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~---v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~   78 (502)
T PRK06184          2 TTTDVLIVGAGPTGLTLAIELARRGVS---FRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYR   78 (502)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCc---EEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEe
Confidence            368999999999999999999999998   9999998211  11100 00         000                00


Q ss_pred             CCCC-C--CCC-------CcccccC-----CCCCCCCHhHHHhCCcEEEeCceEEEEECCCCE--EEe---CCCcEEecc
Q 013952           56 PEGT-A--RLP-------GFHVCVG-----SGGERLLPEWYKEKGIELILSTEIVRADIASKT--LLS---ATGLIFKYQ  115 (433)
Q Consensus        56 ~~~~-~--~~~-------~~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~~---~~~~~~~~d  115 (433)
                      .... .  .+.       ..+....     ......+.+.+.+.++++..++++.+++.++..  +++   .+++++++|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~  158 (502)
T PRK06184         79 DDGSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRAR  158 (502)
T ss_pred             CCceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeC
Confidence            0000 0  000       0000000     000011233345578999999999998765543  334   455689999


Q ss_pred             eEEEccCCCccc
Q 013952          116 ILVIATGSTVLR  127 (433)
Q Consensus       116 ~lvlAtG~~~~~  127 (433)
                      +||.|+|.....
T Consensus       159 ~vVgADG~~S~v  170 (502)
T PRK06184        159 YLVGADGGRSFV  170 (502)
T ss_pred             EEEECCCCchHH
Confidence            999999986543

>TIGR00292 thiazole biosynthesis enzyme

Probab=98.73  E-value=1.3e-06  Score=77.99  Aligned_cols=169  Identities=17%  Similarity=0.154  Sum_probs=108.5

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC----------CC---------------------------C
Q 013952          160 KKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP----------RL---------------------------F  202 (433)
Q Consensus       160 ~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~----------~~---------------------------~  202 (433)
                      ...-.++|||+|+.|+-+|..|++.|.+|.++++.+.+..          ..                           .
T Consensus        19 ~~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~   98 (254)
T TIGR00292        19 YAESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVAD   98 (254)
T ss_pred             hcCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEee
Confidence            3466899999999999999999999999999988654310          00                           1


Q ss_pred             CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCC-cEEEEEeCC-----------CcEEECCEEEEcccCccCh-hhhhc
Q 013952          203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG-EVKEVKLKD-----------GRTLEADIVVVGVGGRPLI-SLFKG  269 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g-~~~~v~~~~-----------g~~i~~d~vi~a~G~~p~~-~~~~~  269 (433)
                      ..++.+.+.+...+.|++++.++.+.++...+++ ++..+.+..           ...++++.||.|+|..... .++..
T Consensus        99 ~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l~~  178 (254)
T TIGR00292        99 SAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVCAK  178 (254)
T ss_pred             HHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHHHHH
Confidence            1245566677778899999999999998763332 566766542           2478999999999965433 33321


Q ss_pred             c--ccc-C-----CCcEEeCC-------CCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhcc
Q 013952          270 Q--VAE-N-----KGGIETDD-------FFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMAT  331 (433)
Q Consensus       270 ~--~~~-~-----~g~i~vd~-------~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~  331 (433)
                      .  +.. .     .+....+.       +-+--+|++|++|=.+....   |.++--+....=...|+.||+.|+..
T Consensus       179 ~~~~~~~~~~~~g~~~~~~~~~e~~~~~~t~~~~~g~~~~gm~~~~~~---~~~rmgp~fg~m~~sg~~~a~~~~~~  252 (254)
T TIGR00292       179 KIVLEDQVPKLGGEKSMWAEVAEVAIHENTREVVPNLYVAGMAVAAVH---GLPRMGPIFGGMLLSGKHVAEQILEK  252 (254)
T ss_pred             HcCcccCCcccCCchhhhhhhhHHHHHhccCcccCCEEEechhhhhhc---CCCCcCchHHHHHHhhHHHHHHHHHH
Confidence            1  111 1     01111110       11124899999997665322   22222233443346789999888754

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=98.72  E-value=3.9e-07  Score=87.31  Aligned_cols=57  Identities=18%  Similarity=0.140  Sum_probs=46.1

Q ss_pred             CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013952          203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP  262 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p  262 (433)
                      +..+...+.+.+.+.|++++.+++|+++... ++ ...+.+.+| .+.+|.||+|+|...
T Consensus       148 p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~-~~-~~~v~~~~g-~~~a~~vV~A~G~~~  204 (376)
T PRK11259        148 PELAIKAHLRLAREAGAELLFNEPVTAIEAD-GD-GVTVTTADG-TYEAKKLVVSAGAWV  204 (376)
T ss_pred             HHHHHHHHHHHHHHCCCEEECCCEEEEEEee-CC-eEEEEeCCC-EEEeeEEEEecCcch
Confidence            4677777778888899999999999999873 33 356777777 799999999999653

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=98.70  E-value=7.8e-08  Score=95.07  Aligned_cols=37  Identities=41%  Similarity=0.582  Sum_probs=34.3

Q ss_pred             CCCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      |+..++||||||||.|||.||..+++.|.+   |+|+||.
T Consensus         2 ~~~~~~DvvVIG~G~AGl~AAi~aa~~g~~---V~l~~K~   38 (562)
T COG1053           2 MTIHEFDVVVIGGGGAGLRAAIEAAEAGLK---VALLSKA   38 (562)
T ss_pred             cccccCCEEEECCcHHHHHHHHHHHhcCCc---EEEEEcc
Confidence            566689999999999999999999999987   9999998

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.70  E-value=7.4e-08  Score=94.89  Aligned_cols=57  Identities=21%  Similarity=0.251  Sum_probs=49.6

Q ss_pred             CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013952          203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG  260 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~  260 (433)
                      -..+.+.+.+.+++.|++|+++++|++|.. ++|+...+...+|+.+++|.||.+...
T Consensus       223 ~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v-~~g~g~~~~~~~g~~~~ad~vv~~~~~  279 (487)
T COG1233         223 MGALVDALAELAREHGGEIRTGAEVSQILV-EGGKGVGVRTSDGENIEADAVVSNADP  279 (487)
T ss_pred             HHHHHHHHHHHHHHcCCEEECCCceEEEEE-eCCcceEEeccccceeccceeEecCch
Confidence            457899999999999999999999999997 566667788888878999999998775

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=98.69  E-value=5.1e-07  Score=87.58  Aligned_cols=58  Identities=24%  Similarity=0.255  Sum_probs=43.4

Q ss_pred             CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCC-----cEEECCEEEEcccCcc
Q 013952          203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG-----RTLEADIVVVGVGGRP  262 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g-----~~i~~d~vi~a~G~~p  262 (433)
                      +..+...+.+.+++.|++++.+++|.++..+ ++. ..+.+.++     .++.+|.||+|+|...
T Consensus       196 ~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~-~~~-~~v~~~~~~~~~~~~i~a~~vV~a~G~~s  258 (410)
T PRK12409        196 IHKFTTGLAAACARLGVQFRYGQEVTSIKTD-GGG-VVLTVQPSAEHPSRTLEFDGVVVCAGVGS  258 (410)
T ss_pred             HHHHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CCE-EEEEEEcCCCCccceEecCEEEECCCcCh
Confidence            3466778888899999999999999999863 333 33433322     3699999999999654

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=98.68  E-value=1.1e-07  Score=91.58  Aligned_cols=124  Identities=17%  Similarity=0.220  Sum_probs=73.9

Q ss_pred             CCCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCC--------c---------cccccCCC-----
Q 013952            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPA--------L---------SKAYLFPE-----   57 (433)
Q Consensus         1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~--------~---------~~~~~~~~-----   57 (433)
                      |..+.+||+|||||++|+++|..|++.|++   |+|+|+. ...+....        +         .-+++...     
T Consensus         1 ~~~~~~dViIvGgG~aGl~~A~~La~~G~~---V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~   77 (391)
T PRK08020          1 MTNQPTDIAIVGGGMVGAALALGLAQHGFS---VAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRS   77 (391)
T ss_pred             CCcccccEEEECcCHHHHHHHHHHhcCCCE---EEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhC
Confidence            566789999999999999999999999987   9999987 32221100        0         00000000     


Q ss_pred             CC-CC-----CCCcccccC-----CCC------C----CCCHhHHHhC-CcEEEeCceEEEEECCCC--EEEeCCCcEEe
Q 013952           58 GT-AR-----LPGFHVCVG-----SGG------E----RLLPEWYKEK-GIELILSTEIVRADIASK--TLLSATGLIFK  113 (433)
Q Consensus        58 ~~-~~-----~~~~~~~~~-----~~~------~----~~~~~~~~~~-~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~  113 (433)
                      .. ..     .......+.     ...      .    ..+.+.+.+. +++++.++.+..+..++.  .|.+.++.+++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~  157 (391)
T PRK08020         78 HPYRRLETWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQ  157 (391)
T ss_pred             cccceEEEEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEE
Confidence            00 00     000000000     000      0    0111222334 899998889988875544  35667788899


Q ss_pred             cceEEEccCCCccc
Q 013952          114 YQILVIATGSTVLR  127 (433)
Q Consensus       114 ~d~lvlAtG~~~~~  127 (433)
                      +|.||.|.|.....
T Consensus       158 a~~vI~AdG~~S~v  171 (391)
T PRK08020        158 AKLVIGADGANSQV  171 (391)
T ss_pred             eCEEEEeCCCCchh
Confidence            99999999976543

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.67  E-value=5.6e-08  Score=94.96  Aligned_cols=99  Identities=19%  Similarity=0.296  Sum_probs=73.3

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      ..+++|||||+.|+.+|..+++.|.+   |+++++......+          . ..           .......+.+++.
T Consensus       157 ~~~vvIIGgG~~g~e~A~~l~~~g~~---Vtli~~~~~~l~~----------~-~~-----------~~~~~~~~~l~~~  211 (438)
T PRK07251        157 PERLGIIGGGNIGLEFAGLYNKLGSK---VTVLDAASTILPR----------E-EP-----------SVAALAKQYMEED  211 (438)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEecCCccCCC----------C-CH-----------HHHHHHHHHHHHc
Confidence            46899999999999999999998876   9999988211100          0 00           0012345667889


Q ss_pred             CcEEEeCceEEEEECCCCEE-EeCCCcEEecceEEEccCCCcccc
Q 013952           85 GIELILSTEIVRADIASKTL-LSATGLIFKYQILVIATGSTVLRL  128 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~~v-~~~~~~~~~~d~lvlAtG~~~~~~  128 (433)
                      |++++.++.+..++.++..+ ...+++++.+|.+++|+|..|...
T Consensus       212 GI~i~~~~~V~~i~~~~~~v~v~~~g~~i~~D~viva~G~~p~~~  256 (438)
T PRK07251        212 GITFLLNAHTTEVKNDGDQVLVVTEDETYRFDALLYATGRKPNTE  256 (438)
T ss_pred             CCEEEcCCEEEEEEecCCEEEEEECCeEEEcCEEEEeeCCCCCcc
Confidence            99999999999998765544 334567899999999999998753

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=98.67  E-value=4e-07  Score=89.12  Aligned_cols=58  Identities=17%  Similarity=0.256  Sum_probs=47.3

Q ss_pred             CHHHHHHHHHHHHh----cC--cEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013952          203 TADIAAFYEGYYAN----KG--IKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP  262 (433)
Q Consensus       203 ~~~~~~~l~~~l~~----~G--V~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p  262 (433)
                      +..+...+.+.+++    .|  ++++++++|.++.. .++..+.|.+.+| ++.+|.||+|+|...
T Consensus       210 ~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~-~~~~~~~V~T~~G-~i~A~~VVvaAG~~S  273 (497)
T PTZ00383        210 YQKLSESFVKHARRDALVPGKKISINLNTEVLNIER-SNDSLYKIHTNRG-EIRARFVVVSACGYS  273 (497)
T ss_pred             HHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEe-cCCCeEEEEECCC-EEEeCEEEECcChhH
Confidence            45778888888888    77  88999999999987 3355567888877 699999999999654

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=98.67  E-value=1.7e-06  Score=85.92  Aligned_cols=64  Identities=19%  Similarity=0.194  Sum_probs=49.7

Q ss_pred             CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe--CCC--cEEECCEEEEccc-CccChhhh
Q 013952          203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL--KDG--RTLEADIVVVGVG-GRPLISLF  267 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~--~~g--~~i~~d~vi~a~G-~~p~~~~~  267 (433)
                      ...+.+.+.+.+++.||+++++++++++.. +++++..+..  .++  ..+.++.||+|+| +.+|.+++
T Consensus       189 g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~-~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~n~~m~  257 (506)
T PRK06481        189 GGYLVDGLLKNVQERKIPLFVNADVTKITE-KDGKVTGVKVKINGKETKTISSKAVVVTTGGFGANKDMI  257 (506)
T ss_pred             hHHHHHHHHHHHHHcCCeEEeCCeeEEEEe-cCCEEEEEEEEeCCCeEEEEecCeEEEeCCCcccCHHHH
Confidence            356788888889999999999999999986 4677766655  333  3689999999998 66665444

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.66  E-value=2e-07  Score=91.89  Aligned_cols=99  Identities=20%  Similarity=0.250  Sum_probs=72.9

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      ..+++|||||+.|+.+|..|++.|.+   |+++++......  ...         .           .....+.+.+++.
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~~---Vtli~~~~~~l~--~~~---------~-----------~~~~~~~~~l~~~  224 (461)
T TIGR01350       170 PESLVIIGGGVIGIEFASIFASLGSK---VTVIEMLDRILP--GED---------A-----------EVSKVVAKALKKK  224 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCc---EEEEEcCCCCCC--CCC---------H-----------HHHHHHHHHHHHc
Confidence            36899999999999999999999876   999998811110  000         0           0012345667788


Q ss_pred             CcEEEeCceEEEEECCCCEE--EeCCC--cEEecceEEEccCCCcccc
Q 013952           85 GIELILSTEIVRADIASKTL--LSATG--LIFKYQILVIATGSTVLRL  128 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~~v--~~~~~--~~~~~d~lvlAtG~~~~~~  128 (433)
                      +++++.++.+..++.+++.+  .+.++  .++++|.+++|+|..|...
T Consensus       225 gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~  272 (461)
T TIGR01350       225 GVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNTE  272 (461)
T ss_pred             CCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCC
Confidence            99999999999888665544  34455  4799999999999988654

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK07045 putative monooxygenase; Reviewed

Probab=98.66  E-value=8.6e-08  Score=92.22  Aligned_cols=122  Identities=18%  Similarity=0.207  Sum_probs=72.9

Q ss_pred             CCCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCC-CCCCC-c---ccc------ccC---CCCCCCCCCc
Q 013952            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAP-YERPA-L---SKA------YLF---PEGTARLPGF   65 (433)
Q Consensus         1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~-~~~~~-~---~~~------~~~---~~~~~~~~~~   65 (433)
                      |++.++||+||||||+|+++|..|++.|++   |+|+|+. ... ..+.. +   +..      ++.   .........+
T Consensus         1 ~~~~~~~V~IiGgGpaGl~~A~~L~~~G~~---v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~   77 (388)
T PRK07045          1 MKNNPVDVLINGSGIAGVALAHLLGARGHS---VTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAM   77 (388)
T ss_pred             CCCceeEEEEECCcHHHHHHHHHHHhcCCc---EEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccce
Confidence            777789999999999999999999999998   9999988 211 10100 0   000      000   0000000000


Q ss_pred             c----------cccCC----CC-----CCCCHhH----HH-hCCcEEEeCceEEEEECCCC----EEEeCCCcEEecceE
Q 013952           66 H----------VCVGS----GG-----ERLLPEW----YK-EKGIELILSTEIVRADIASK----TLLSATGLIFKYQIL  117 (433)
Q Consensus        66 ~----------~~~~~----~~-----~~~~~~~----~~-~~~v~~~~~~~v~~i~~~~~----~v~~~~~~~~~~d~l  117 (433)
                      .          .....    ..     ...+.+.    +. ..++++..++++..+.....    .|.+.+++++.+|.+
T Consensus        78 ~~~~~g~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~v  157 (388)
T PRK07045         78 RLYHDKELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVL  157 (388)
T ss_pred             EEecCCcEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEE
Confidence            0          00000    00     0011111    11 24789999999998875432    366778889999999


Q ss_pred             EEccCCCc
Q 013952          118 VIATGSTV  125 (433)
Q Consensus       118 vlAtG~~~  125 (433)
                      |-|.|...
T Consensus       158 IgADG~~S  165 (388)
T PRK07045        158 VGADGARS  165 (388)
T ss_pred             EECCCCCh
Confidence            99999765

>PRK07236 hypothetical protein; Provisional

Probab=98.65  E-value=2.2e-07  Score=89.26  Aligned_cols=119  Identities=20%  Similarity=0.195  Sum_probs=69.6

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC-CCC---ccc---cccCCCCCC-----CCCC--ccc--c
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYE-RPA---LSK---AYLFPEGTA-----RLPG--FHV--C   68 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~-~~~---~~~---~~~~~~~~~-----~~~~--~~~--~   68 (433)
                      .++|+|||||++|+++|..|++.|++   |+|+|+...+.. +..   +..   ..+..-...     ..+.  ...  .
T Consensus         6 ~~~ViIVGaG~aGl~~A~~L~~~G~~---v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~   82 (386)
T PRK07236          6 GPRAVVIGGSLGGLFAALLLRRAGWD---VDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDR   82 (386)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCC---EEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeC
Confidence            58999999999999999999999998   999999821211 100   000   000000000     0000  000  0


Q ss_pred             cCCC-----------CCCCCHhHHHh--CCcEEEeCceEEEEECCCC--EEEeCCCcEEecceEEEccCCCcc
Q 013952           69 VGSG-----------GERLLPEWYKE--KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVL  126 (433)
Q Consensus        69 ~~~~-----------~~~~~~~~~~~--~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~  126 (433)
                      .+..           ....+...+.+  .+++++.++.++.+..++.  ++++.+++++++|.||.|-|....
T Consensus        83 ~g~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S~  155 (386)
T PRK07236         83 DGRVVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRST  155 (386)
T ss_pred             CCCEeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCch
Confidence            0000           00001111211  2467888999999876554  366788889999999999997553

>TIGR00275 flavoprotein, HI0933 family

Probab=98.65  E-value=4.7e-07  Score=87.06  Aligned_cols=83  Identities=18%  Similarity=0.232  Sum_probs=60.6

Q ss_pred             HHHHHHHhCCCeEEEEccCCccCCC-CCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEE
Q 013952          176 ELSAALKINNIDVSMVYPEPWCMPR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIV  254 (433)
Q Consensus       176 e~a~~l~~~g~~V~li~~~~~~~~~-~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~v  254 (433)
                      ++..++.+.|.+++..... +.++. ....++.+.+.+.+++.|+++++++.|.++..  ++....+++ +++++.+|.|
T Consensus        77 d~~~~~~~~Gv~~~~~~~g-~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~--~~~~~~v~~-~~~~i~ad~V  152 (400)
T TIGR00275        77 DLIDFFESLGLELKVEEDG-RVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKK--DDNGFGVET-SGGEYEADKV  152 (400)
T ss_pred             HHHHHHHHcCCeeEEecCC-EeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEe--cCCeEEEEE-CCcEEEcCEE
Confidence            4556677788877765433 33321 13578889999999999999999999999976  233345666 4568999999


Q ss_pred             EEcccCcc
Q 013952          255 VVGVGGRP  262 (433)
Q Consensus       255 i~a~G~~p  262 (433)
                      |+|+|...
T Consensus       153 IlAtG~~s  160 (400)
T TIGR00275       153 ILATGGLS  160 (400)
T ss_pred             EECCCCcc
Confidence            99999643

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=98.64  E-value=7.3e-07  Score=85.62  Aligned_cols=61  Identities=21%  Similarity=0.269  Sum_probs=48.0

Q ss_pred             CHHHHHHHHHHHHhcC-cEEEcCCeEEEEEecCCCcEEEEEeC-CCcEEECCEEEEcccCccChh
Q 013952          203 TADIAAFYEGYYANKG-IKIIKGTVAVGFTTNADGEVKEVKLK-DGRTLEADIVVVGVGGRPLIS  265 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~G-V~v~~~~~v~~i~~~~~g~~~~v~~~-~g~~i~~d~vi~a~G~~p~~~  265 (433)
                      ..++.+.+.+.+++.+ |+++.+++|+.++.++ +.+ .+++. +|+++.||++|-|=|......
T Consensus       103 ~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~-~~v-~v~l~~dG~~~~a~llVgADG~~S~vR  165 (387)
T COG0654         103 RSDLLNALLEAARALPNVTLRFGAEVEAVEQDG-DGV-TVTLSFDGETLDADLLVGADGANSAVR  165 (387)
T ss_pred             hHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcC-Cce-EEEEcCCCcEEecCEEEECCCCchHHH
Confidence            3566777888887766 9999999999999833 333 37777 999999999999999765443

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.64  E-value=1.3e-07  Score=91.53  Aligned_cols=120  Identities=16%  Similarity=0.179  Sum_probs=72.3

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcC--CCCCcEEEEcCC-CC-CCC--CCC-c---------cccccCC--CCCCCC-----
Q 013952            6 FKYVILGGGVSAGYAAREFAKQG--VKPGELAIISKE-VA-PYE--RPA-L---------SKAYLFP--EGTARL-----   62 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g--~~~~~V~lie~~-~~-~~~--~~~-~---------~~~~~~~--~~~~~~-----   62 (433)
                      +||+||||||+|+++|..|+++|  ++   |+|+|+. .. +..  +.. +         .-+++..  ......     
T Consensus         2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~---v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~   78 (403)
T PRK07333          2 CDVVIAGGGYVGLALAVALKQAAPHLP---VTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVI   78 (403)
T ss_pred             CCEEEECccHHHHHHHHHHhcCCCCCE---EEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEE
Confidence            79999999999999999999985  66   9999998 21 111  100 0         0000000  000000     


Q ss_pred             ----------CC-cccc----cCCC---------CCCCCHhHHHhCCcEEEeCceEEEEECCCCE--EEeCCCcEEecce
Q 013952           63 ----------PG-FHVC----VGSG---------GERLLPEWYKEKGIELILSTEIVRADIASKT--LLSATGLIFKYQI  116 (433)
Q Consensus        63 ----------~~-~~~~----~~~~---------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d~  116 (433)
                                .. ....    .+..         ....+.+.+.+.+++++.++.++.++.++..  +.+.++.++.+|.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~  158 (403)
T PRK07333         79 TDSRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARL  158 (403)
T ss_pred             EeCCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCE
Confidence                      00 0000    0000         0112233344579999999999998766554  5567788899999


Q ss_pred             EEEccCCCcccc
Q 013952          117 LVIATGSTVLRL  128 (433)
Q Consensus       117 lvlAtG~~~~~~  128 (433)
                      ||.|+|......
T Consensus       159 vI~AdG~~S~vr  170 (403)
T PRK07333        159 LVAADGARSKLR  170 (403)
T ss_pred             EEEcCCCChHHH
Confidence            999999866543

>PLN02697 lycopene epsilon cyclase

Probab=98.63  E-value=1.3e-07  Score=93.09  Aligned_cols=116  Identities=20%  Similarity=0.281  Sum_probs=67.9

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC-cc-ccc----cCCCCCCCCCCcccc--------cC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPA-LS-KAY----LFPEGTARLPGFHVC--------VG   70 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~-~~-~~~----~~~~~~~~~~~~~~~--------~~   70 (433)
                      .+||+||||||||+++|..|++.|++   |++||+. .++..+. .. ..+    +........++....        .+
T Consensus       108 ~~DVvIVGaGPAGLalA~~Lak~Gl~---V~LIe~~-~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~  183 (529)
T PLN02697        108 TLDLVVIGCGPAGLALAAESAKLGLN---VGLIGPD-LPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIG  183 (529)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCc---EEEecCc-ccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeecc
Confidence            58999999999999999999999998   9999987 1121110 00 000    000000000000000        00


Q ss_pred             CCC--------CCCCHhHHHhCCcEEEeCceEEEEECCCCE---EEeCCCcEEecceEEEccCCCc
Q 013952           71 SGG--------ERLLPEWYKEKGIELILSTEIVRADIASKT---LLSATGLIFKYQILVIATGSTV  125 (433)
Q Consensus        71 ~~~--------~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~---v~~~~~~~~~~d~lvlAtG~~~  125 (433)
                      ...        ...+.+.+.+.|+++. +..|..+..+...   +.+.++.++.++.||.|+|...
T Consensus       184 ~~Yg~V~R~~L~~~Ll~~a~~~GV~~~-~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S  248 (529)
T PLN02697        184 RAYGRVSRTLLHEELLRRCVESGVSYL-SSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS  248 (529)
T ss_pred             CcccEEcHHHHHHHHHHHHHhcCCEEE-eeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence            000        0112223345689984 4688888754332   3456778899999999999765

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.63  E-value=1e-06  Score=87.75  Aligned_cols=101  Identities=23%  Similarity=0.248  Sum_probs=81.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccC--Ccc-----------CCCCCCHHHHHHHHHHHHhcCcEEEcCCeEE
Q 013952          162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPE--PWC-----------MPRLFTADIAAFYEGYYANKGIKIIKGTVAV  228 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~--~~~-----------~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~  228 (433)
                      ...++|||+|+.|+.+|..+++.|.+|+++...  ..+           .+.....++.+.+.+.+++.|++++.++++.
T Consensus       211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~  290 (517)
T PRK15317        211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQRAS  290 (517)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCCEEE
Confidence            458999999999999999999999999998642  111           0111356788899999999999999999999


Q ss_pred             EEEecCCCcEEEEEeCCCcEEECCEEEEcccCccCh
Q 013952          229 GFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI  264 (433)
Q Consensus       229 ~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~  264 (433)
                      ++...  +....+.+.+|+++.+|.+|+|+|.+|+.
T Consensus       291 ~I~~~--~~~~~V~~~~g~~i~a~~vViAtG~~~r~  324 (517)
T PRK15317        291 KLEPA--AGLIEVELANGAVLKAKTVILATGARWRN  324 (517)
T ss_pred             EEEec--CCeEEEEECCCCEEEcCEEEECCCCCcCC
Confidence            99873  23456777888889999999999987754

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=98.63  E-value=1.1e-07  Score=92.06  Aligned_cols=123  Identities=19%  Similarity=0.205  Sum_probs=72.6

Q ss_pred             CCCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCC--C----CCC-Ccc---------ccccCCCC---CC
Q 013952            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAP--Y----ERP-ALS---------KAYLFPEG---TA   60 (433)
Q Consensus         1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~--~----~~~-~~~---------~~~~~~~~---~~   60 (433)
                      ||. .+||+|||||++|+++|..|++.|++   |+|+|+. ..+  .    .|. .++         -+++..-.   ..
T Consensus         1 ~m~-~~dV~IvGaG~~Gl~~A~~L~~~G~~---v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~   76 (405)
T PRK08850          1 MMQ-SVDVAIIGGGMVGLALAAALKESDLR---IAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAA   76 (405)
T ss_pred             CCC-cCCEEEECccHHHHHHHHHHHhCCCE---EEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCC
Confidence            664 68999999999999999999999988   9999985 211  0    110 010         00000000   00


Q ss_pred             CCCCcccc---------cCCC-C-C-------------CCCHhHHHh-CCcEEEeCceEEEEECCCC--EEEeCCCcEEe
Q 013952           61 RLPGFHVC---------VGSG-G-E-------------RLLPEWYKE-KGIELILSTEIVRADIASK--TLLSATGLIFK  113 (433)
Q Consensus        61 ~~~~~~~~---------~~~~-~-~-------------~~~~~~~~~-~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~  113 (433)
                      ....+...         +... . .             ..+.+.+.+ .++++..++++..+..++.  .|.+.++++++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~  156 (405)
T PRK08850         77 PYIAMEVWEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALT  156 (405)
T ss_pred             cccEEEEEeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEE
Confidence            00000000         0000 0 0             001111222 3789999999998865443  56778888999


Q ss_pred             cceEEEccCCCccc
Q 013952          114 YQILVIATGSTVLR  127 (433)
Q Consensus       114 ~d~lvlAtG~~~~~  127 (433)
                      +|.||.|.|.....
T Consensus       157 a~lvIgADG~~S~v  170 (405)
T PRK08850        157 AKLVVGADGANSWL  170 (405)
T ss_pred             eCEEEEeCCCCChh
Confidence            99999999976543

>PRK06185 hypothetical protein; Provisional

Probab=98.62  E-value=1.2e-07  Score=91.81  Aligned_cols=37  Identities=27%  Similarity=0.459  Sum_probs=33.5

Q ss_pred             CC-CCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            1 MA-EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         1 Mm-~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      || ...+||+|||||++|+++|..|++.|++   |+|+|+.
T Consensus         1 ~~~~~~~dV~IvGgG~~Gl~~A~~La~~G~~---v~liE~~   38 (407)
T PRK06185          1 MAEVETTDCCIVGGGPAGMMLGLLLARAGVD---VTVLEKH   38 (407)
T ss_pred             CCccccccEEEECCCHHHHHHHHHHHhCCCc---EEEEecC
Confidence            44 3469999999999999999999999987   9999987

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=98.62  E-value=1.9e-07  Score=92.08  Aligned_cols=118  Identities=17%  Similarity=0.258  Sum_probs=68.5

Q ss_pred             CCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCC-CCCccccccCC-CCC---CCCCCc----------c
Q 013952            3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYE-RPALSKAYLFP-EGT---ARLPGF----------H   66 (433)
Q Consensus         3 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~-~~~~~~~~~~~-~~~---~~~~~~----------~   66 (433)
                      +..|||||||||+||+.||..+++.|.+   |+|+|++ ..... .|..+.+.... .-.   ..+.+.          .
T Consensus         2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~k---V~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq   78 (618)
T PRK05192          2 PEEYDVIVVGGGHAGCEAALAAARMGAK---TLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQ   78 (618)
T ss_pred             CccceEEEECchHHHHHHHHHHHHcCCc---EEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCc
Confidence            3469999999999999999999999998   9999987 22211 11111110000 000   000000          0


Q ss_pred             cc-----cCC-------CCC-----CCCHhHHHh-CCcEEEeCceEEEEECCCCE---EEeCCCcEEecceEEEccCCC
Q 013952           67 VC-----VGS-------GGE-----RLLPEWYKE-KGIELILSTEIVRADIASKT---LLSATGLIFKYQILVIATGST  124 (433)
Q Consensus        67 ~~-----~~~-------~~~-----~~~~~~~~~-~~v~~~~~~~v~~i~~~~~~---v~~~~~~~~~~d~lvlAtG~~  124 (433)
                      ..     .+.       ...     ..+.+.+.+ .+++++.+ .|..+..++..   |.+.+|..+.++.+|+|||..
T Consensus        79 ~r~ln~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q~-~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGTF  156 (618)
T PRK05192         79 FRMLNTSKGPAVRALRAQADRKLYRAAMREILENQPNLDLFQG-EVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGTF  156 (618)
T ss_pred             eeecccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEecCCEEEEEEECCCCEEECCEEEEeeCcc
Confidence            00     000       000     011122233 37888764 77777655543   567788899999999999974

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=98.61  E-value=1.2e-07  Score=79.41  Aligned_cols=33  Identities=36%  Similarity=0.472  Sum_probs=31.4

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ..||+||||||+||+||++|++.|++   |+++|++
T Consensus        30 esDViIVGaGPsGLtAAyyLAk~g~k---V~i~E~~   62 (262)
T COG1635          30 ESDVIIVGAGPSGLTAAYYLAKAGLK---VAIFERK   62 (262)
T ss_pred             hccEEEECcCcchHHHHHHHHhCCce---EEEEEee
Confidence            35999999999999999999999998   9999999

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.61  E-value=1.1e-06  Score=87.39  Aligned_cols=102  Identities=24%  Similarity=0.248  Sum_probs=81.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccC--CccC-----------CCCCCHHHHHHHHHHHHhcCcEEEcCCeE
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE--PWCM-----------PRLFTADIAAFYEGYYANKGIKIIKGTVA  227 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~--~~~~-----------~~~~~~~~~~~l~~~l~~~GV~v~~~~~v  227 (433)
                      ....++|||+|+.|+.+|..+++.|.+|+++...  ..+.           +.....++.+.+.+.+++.||+++.+++|
T Consensus       211 ~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~~~V  290 (515)
T TIGR03140       211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQRA  290 (515)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcCCEE
Confidence            4579999999999999999999999999998531  1111           11134678888889999999999999999


Q ss_pred             EEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccCh
Q 013952          228 VGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI  264 (433)
Q Consensus       228 ~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~  264 (433)
                      .++..  ++....+.+.+|+.+.+|.+|+|+|.+|..
T Consensus       291 ~~I~~--~~~~~~v~~~~g~~i~~d~lIlAtGa~~~~  325 (515)
T TIGR03140       291 KKIET--EDGLIVVTLESGEVLKAKSVIVATGARWRK  325 (515)
T ss_pred             EEEEe--cCCeEEEEECCCCEEEeCEEEECCCCCcCC
Confidence            99976  333356777888889999999999988753

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>TIGR02731 phytoene_desat phytoene desaturase

Probab=98.61  E-value=8.4e-07  Score=87.20  Aligned_cols=58  Identities=22%  Similarity=0.278  Sum_probs=48.3

Q ss_pred             CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCc-----EEECCEEEEcccC
Q 013952          203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGR-----TLEADIVVVGVGG  260 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~-----~i~~d~vi~a~G~  260 (433)
                      ...+.+.+.+.+++.|++++++++|++|...+++++..+.+.+++     ++.+|.||+++..
T Consensus       212 ~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~  274 (453)
T TIGR02731       212 PERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPV  274 (453)
T ss_pred             hHHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCH
Confidence            356778888888899999999999999986556777778886665     7999999999874

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PLN02612 phytoene desaturase

Probab=98.61  E-value=1.1e-06  Score=88.14  Aligned_cols=58  Identities=19%  Similarity=0.223  Sum_probs=49.9

Q ss_pred             CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013952          203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG  260 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~  260 (433)
                      +..+.+.+.+.+++.|++++++++|++|..++++.+..+.+.+|+++++|.||+|++.
T Consensus       307 ~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~  364 (567)
T PLN02612        307 PERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPV  364 (567)
T ss_pred             hHHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCH
Confidence            3567788888888999999999999999886677677788888989999999999873

>PRK08244 hypothetical protein; Provisional

Probab=98.60  E-value=1.9e-07  Score=92.75  Aligned_cols=120  Identities=23%  Similarity=0.384  Sum_probs=70.7

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-C-CCCCCCCc----------cccccCC--CCCCCCCC------
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-V-APYERPAL----------SKAYLFP--EGTARLPG------   64 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~-~~~~~~~~----------~~~~~~~--~~~~~~~~------   64 (433)
                      ++||+||||||+|+++|..|++.|++   |+|||+. . ....+...          .-+++..  .....++.      
T Consensus         2 ~~dVlIVGaGpaGl~lA~~L~~~G~~---v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~   78 (493)
T PRK08244          2 KYEVIIIGGGPVGLMLASELALAGVK---TCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGL   78 (493)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecc
Confidence            38999999999999999999999998   9999998 2 11111000          0000000  00000000      


Q ss_pred             ---cccc---cCC---------CCCCCCHhHHHhCCcEEEeCceEEEEECCCCE--EEeC--CC-cEEecceEEEccCCC
Q 013952           65 ---FHVC---VGS---------GGERLLPEWYKEKGIELILSTEIVRADIASKT--LLSA--TG-LIFKYQILVIATGST  124 (433)
Q Consensus        65 ---~~~~---~~~---------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~~~--~~-~~~~~d~lvlAtG~~  124 (433)
                         ....   ...         .....+.+.+++.++++..++++.++..++..  +.+.  ++ .++++|+||.|.|..
T Consensus        79 ~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~  158 (493)
T PRK08244         79 DTRLDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAG  158 (493)
T ss_pred             cccCCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCC
Confidence               0000   000         00111223345579999999999988765554  3333  34 479999999999987


Q ss_pred             ccc
Q 013952          125 VLR  127 (433)
Q Consensus       125 ~~~  127 (433)
                      ...
T Consensus       159 S~v  161 (493)
T PRK08244        159 SIV  161 (493)
T ss_pred             hHH
Confidence            643

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=98.60  E-value=6.6e-07  Score=73.97  Aligned_cols=32  Identities=25%  Similarity=0.413  Sum_probs=28.3

Q ss_pred             EEECCCHHHHHHHHHHHHcC--CCCCcEEEEcCC
Q 013952            9 VILGGGVSAGYAAREFAKQG--VKPGELAIISKE   40 (433)
Q Consensus         9 vIIGgG~aGl~aA~~l~~~g--~~~~~V~lie~~   40 (433)
                      +|||+|++|++++.+|.+..  .+..+|+|+|+.
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~   34 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPS   34 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCC
Confidence            59999999999999999984  456789999998

>PRK07233 hypothetical protein; Provisional

Probab=98.59  E-value=2.8e-07  Score=90.13  Aligned_cols=56  Identities=21%  Similarity=0.219  Sum_probs=44.6

Q ss_pred             CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013952          203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG  260 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~  260 (433)
                      ...+.+.+.+.+++.|++++++++|.+|+.+ ++.+..+. .+++.+++|.||+|++.
T Consensus       197 ~~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~-~~~~~~~~-~~~~~~~ad~vI~a~p~  252 (434)
T PRK07233        197 FATLIDALAEAIEARGGEIRLGTPVTSVVID-GGGVTGVE-VDGEEEDFDAVISTAPP  252 (434)
T ss_pred             HHHHHHHHHHHHHhcCceEEeCCCeeEEEEc-CCceEEEE-eCCceEECCEEEECCCH
Confidence            3567888888899999999999999999873 34443343 56678999999999985

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=98.59  E-value=7.8e-07  Score=91.37  Aligned_cols=57  Identities=16%  Similarity=0.213  Sum_probs=46.6

Q ss_pred             CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013952          203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP  262 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p  262 (433)
                      +..+...+.+.+++ |++++.+++|+++... ++. ..|.+.+|..+.+|.||+|+|...
T Consensus       407 p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~-~~~-~~v~t~~g~~~~ad~VV~A~G~~s  463 (662)
T PRK01747        407 PAELCRALLALAGQ-QLTIHFGHEVARLERE-DDG-WQLDFAGGTLASAPVVVLANGHDA  463 (662)
T ss_pred             HHHHHHHHHHhccc-CcEEEeCCEeeEEEEe-CCE-EEEEECCCcEEECCEEEECCCCCc
Confidence            56788888888888 9999999999999863 333 457888887788999999999754

>PF02852 Pyr_redox_dim: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; InterPro: IPR004099 This entry represents a dimerisation domain that is usually found at the C-terminal of both class I and class II oxidoreductases, as well as in NADH oxidases and peroxidases [, , ]

Probab=98.58  E-value=5e-08  Score=75.50  Aligned_cols=56  Identities=20%  Similarity=0.185  Sum_probs=47.1

Q ss_pred             cCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhcccCCCccc
Q 013952          376 ATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFAS  431 (433)
Q Consensus       376 ~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (433)
                      ..++|.|+++  ++++|+|+|++|++++|+ +.++.+|++++|++++....-+-+++++
T Consensus        46 ~~~g~~Kli~d~~t~~IlGa~~vg~~a~e~I~~~~~ai~~~~t~~~l~~~~~~~Pt~se  104 (110)
T PF02852_consen   46 ETEGFVKLIFDKKTGRILGAQIVGPNASELINELALAIQNGLTVEDLADDIFYHPTFSE  104 (110)
T ss_dssp             TTEEEEEEEEETTTTBEEEEEEEETTHHHHHHHHHHHHHTTSBHHHHHTSBSSSTSTGH
T ss_pred             CcceeeEEEEEeeccceeeeeeecCchHHHHHHHHHHHHcCCCHHHHhCCeeeCCChhH
Confidence            3678899887  579999999999999995 9999999999999877776666666654

; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0045454 cell redox homeostasis, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3II4_B 2A8X_A 2BC0_B 2BC1_B 2W0H_A 2X50_B 2JK6_A 2YAU_A 2EQ9_E 2EQ6_B ....

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=98.58  E-value=2.2e-06  Score=82.47  Aligned_cols=57  Identities=23%  Similarity=0.285  Sum_probs=45.9

Q ss_pred             CHHHHHHHHHHHHhcC-cEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013952          203 TADIAAFYEGYYANKG-IKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP  262 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~G-V~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p  262 (433)
                      +..+.+.+.+.+++.| ..+..++.+..+... . ....|.+.+|+ +.+|.||+|+|...
T Consensus       155 p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~-~-~~~~v~t~~g~-i~a~~vv~a~G~~~  212 (387)
T COG0665         155 PRLLTRALAAAAEELGVVIIEGGTPVTSLERD-G-RVVGVETDGGT-IEADKVVLAAGAWA  212 (387)
T ss_pred             HHHHHHHHHHHHHhcCCeEEEccceEEEEEec-C-cEEEEEeCCcc-EEeCEEEEcCchHH
Confidence            5688889999999999 566668888888762 2 56788888886 99999999999543

>PRK08013 oxidoreductase; Provisional

Probab=98.56  E-value=2.3e-07  Score=89.61  Aligned_cols=120  Identities=19%  Similarity=0.237  Sum_probs=71.4

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCC-CC------CC-Ccc---------ccccCCCC---CCCCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAP-YE------RP-ALS---------KAYLFPEG---TARLP   63 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~-~~------~~-~~~---------~~~~~~~~---~~~~~   63 (433)
                      .+||+||||||+|+++|..|++.|++   |+|+|+. ... ..      +. .+.         -+++..-.   ...+.
T Consensus         3 ~~dV~IvGaGpaGl~~A~~La~~G~~---v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~   79 (400)
T PRK08013          3 SVDVVIAGGGMVGLAVACGLQGSGLR---VAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYH   79 (400)
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCE---EEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCcccc
Confidence            58999999999999999999999998   9999998 311 00      00 000         01110000   00000


Q ss_pred             Ccc---------ccc-----CCCCC----------CCCHhHHHh-CCcEEEeCceEEEEECCCC--EEEeCCCcEEecce
Q 013952           64 GFH---------VCV-----GSGGE----------RLLPEWYKE-KGIELILSTEIVRADIASK--TLLSATGLIFKYQI  116 (433)
Q Consensus        64 ~~~---------~~~-----~~~~~----------~~~~~~~~~-~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~  116 (433)
                      ...         ..+     +....          ..+.+.+.+ .+++++.++++..++.++.  .+++.+++++++|.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~l  159 (400)
T PRK08013         80 GMEVWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARL  159 (400)
T ss_pred             EEEEEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeE
Confidence            000         000     00000          001111223 3799999999998865544  45667888999999


Q ss_pred             EEEccCCCccc
Q 013952          117 LVIATGSTVLR  127 (433)
Q Consensus       117 lvlAtG~~~~~  127 (433)
                      ||-|.|.....
T Consensus       160 vVgADG~~S~v  170 (400)
T PRK08013        160 VVGADGANSWL  170 (400)
T ss_pred             EEEeCCCCcHH
Confidence            99999976543

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.55  E-value=2.2e-07  Score=89.22  Aligned_cols=120  Identities=18%  Similarity=0.303  Sum_probs=71.5

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCC--C------Ccc---------ccccCCC---CCCCCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYER--P------ALS---------KAYLFPE---GTARLP   63 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~--~------~~~---------~~~~~~~---~~~~~~   63 (433)
                      .+||+|||||++|+++|..|++.|++   |+|+|+. ...+..  +      .++         -+++..-   ....+.
T Consensus         3 ~~dv~IvGgG~aGl~~A~~L~~~G~~---v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~   79 (384)
T PRK08849          3 KYDIAVVGGGMVGAATALGFAKQGRS---VAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYK   79 (384)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCc---EEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccc
Confidence            58999999999999999999999998   9999987 322211  0      000         0000000   000000


Q ss_pred             Cc--------ccccCCCC---------C--CCCH----hHHHh-CCcEEEeCceEEEEECCCC--EEEeCCCcEEecceE
Q 013952           64 GF--------HVCVGSGG---------E--RLLP----EWYKE-KGIELILSTEIVRADIASK--TLLSATGLIFKYQIL  117 (433)
Q Consensus        64 ~~--------~~~~~~~~---------~--~~~~----~~~~~-~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~l  117 (433)
                      ..        ...+....         .  ..+.    +.+.. .+++++.++++.++..++.  ++++.++.++++|.|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lv  159 (384)
T PRK08849         80 RLETWEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWV  159 (384)
T ss_pred             eEEEEeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEE
Confidence            00        00000000         0  0011    11122 4689999999998876544  577888889999999


Q ss_pred             EEccCCCccc
Q 013952          118 VIATGSTVLR  127 (433)
Q Consensus       118 vlAtG~~~~~  127 (433)
                      |.|+|.....
T Consensus       160 IgADG~~S~v  169 (384)
T PRK08849        160 IGADGANSQV  169 (384)
T ss_pred             EEecCCCchh
Confidence            9999986543

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=98.54  E-value=7.7e-07  Score=77.30  Aligned_cols=98  Identities=31%  Similarity=0.467  Sum_probs=67.8

Q ss_pred             EEECCCHHHHHHHHHHHhCCCe-EEEEccCCccC--------------CCCC----------------------------
Q 013952          166 VVVGGGYIGLELSAALKINNID-VSMVYPEPWCM--------------PRLF----------------------------  202 (433)
Q Consensus       166 ~ViG~G~~g~e~a~~l~~~g~~-V~li~~~~~~~--------------~~~~----------------------------  202 (433)
                      +|||+|+.|+-+|..|.+.|.+ ++++++.+.+.              +..+                            
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS   80 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence            6999999999999999999999 99998763321              0000                            


Q ss_pred             CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC--ccChh
Q 013952          203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG--RPLIS  265 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~--~p~~~  265 (433)
                      .+++.+.+++..++.+++++++++|+++..++++  ..|++.+++++.||.||+|+|.  .|+..
T Consensus        81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~--w~v~~~~~~~~~a~~VVlAtG~~~~p~~p  143 (203)
T PF13738_consen   81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDG--WTVTTRDGRTIRADRVVLATGHYSHPRIP  143 (203)
T ss_dssp             HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTT--EEEEETTS-EEEEEEEEE---SSCSB---
T ss_pred             HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccE--EEEEEEecceeeeeeEEEeeeccCCCCcc
Confidence            1245678888889999999999999999985444  7899999988999999999995  55544

...

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=98.53  E-value=7.9e-07  Score=85.66  Aligned_cols=99  Identities=14%  Similarity=0.283  Sum_probs=73.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCC--eEEEEccCCccCC--CCCCHHHH---------HHHHHHHHhcCcEEEcCCeEE
Q 013952          162 NGKAVVVGGGYIGLELSAALKINNI--DVSMVYPEPWCMP--RLFTADIA---------AFYEGYYANKGIKIIKGTVAV  228 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g~--~V~li~~~~~~~~--~~~~~~~~---------~~l~~~l~~~GV~v~~~~~v~  228 (433)
                      .++++|||+|+.|+.+|..|++.+.  +|+++.+.+...-  ..+...+.         ..-.+.+++.||+++.++.|.
T Consensus         3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~V~   82 (396)
T PRK09754          3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTIK   82 (396)
T ss_pred             cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCCEEE
Confidence            5789999999999999999999876  7999987643211  01222211         001344677899999999999


Q ss_pred             EEEecCCCcEEEEEeCCCcEEECCEEEEcccCccCh
Q 013952          229 GFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI  264 (433)
Q Consensus       229 ~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~  264 (433)
                      .++.  +.  ..+.+.+|+++.+|.+|+|||.+|+.
T Consensus        83 ~id~--~~--~~v~~~~g~~~~yd~LViATGs~~~~  114 (396)
T PRK09754         83 TLGR--DT--RELVLTNGESWHWDQLFIATGAAARP  114 (396)
T ss_pred             EEEC--CC--CEEEECCCCEEEcCEEEEccCCCCCC
Confidence            9976  33  24677888899999999999998854

>PRK08163 salicylate hydroxylase; Provisional

Probab=98.53  E-value=3e-07  Score=88.72  Aligned_cols=123  Identities=20%  Similarity=0.192  Sum_probs=71.6

Q ss_pred             CCCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCC-CCCC-Ccc---------ccccCC--CCCCCCCCcc
Q 013952            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAP-YERP-ALS---------KAYLFP--EGTARLPGFH   66 (433)
Q Consensus         1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~-~~~~-~~~---------~~~~~~--~~~~~~~~~~   66 (433)
                      |+ ...||+|||||++|+++|..|++.|++   |+|+|+. ... ..+. .+.         -++...  ........+.
T Consensus         1 ~~-~~~~V~IvGaGiaGl~~A~~L~~~g~~---v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~   76 (396)
T PRK08163          1 MT-KVTPVLIVGGGIGGLAAALALARQGIK---VKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLT   76 (396)
T ss_pred             CC-CCCeEEEECCcHHHHHHHHHHHhCCCc---EEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceE
Confidence            55 468999999999999999999999998   9999998 211 0000 000         000000  0000000000


Q ss_pred             c--------------------ccCCCC--------CCCCHhHHHhC-CcEEEeCceEEEEECCCC--EEEeCCCcEEecc
Q 013952           67 V--------------------CVGSGG--------ERLLPEWYKEK-GIELILSTEIVRADIASK--TLLSATGLIFKYQ  115 (433)
Q Consensus        67 ~--------------------~~~~~~--------~~~~~~~~~~~-~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d  115 (433)
                      .                    ..+...        ...+.+.+.+. +++++.++.+.+++.++.  .+.+.++.++.+|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad  156 (396)
T PRK08163         77 MMDAVDAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGD  156 (396)
T ss_pred             EEeCCCCCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecC
Confidence            0                    000000        00111222233 489999999999876554  3556677889999


Q ss_pred             eEEEccCCCccc
Q 013952          116 ILVIATGSTVLR  127 (433)
Q Consensus       116 ~lvlAtG~~~~~  127 (433)
                      .||.|.|.....
T Consensus       157 ~vV~AdG~~S~~  168 (396)
T PRK08163        157 ALIGCDGVKSVV  168 (396)
T ss_pred             EEEECCCcChHH
Confidence            999999976543

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=98.53  E-value=2.4e-07  Score=86.58  Aligned_cols=113  Identities=23%  Similarity=0.319  Sum_probs=62.8

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCC-CCcc-----ccccCCC------------CCCCC-----
Q 013952            7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYER-PALS-----KAYLFPE------------GTARL-----   62 (433)
Q Consensus         7 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~-~~~~-----~~~~~~~------------~~~~~-----   62 (433)
                      ||+|||||+||..||+.+++.|.+   |+|+... ...... |..+     ++.+...            ....+     
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~~---V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~l   77 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGAK---VLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRML   77 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT-----EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCC---EEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhcc
Confidence            899999999999999999999998   9999544 221111 1111     1110000            00000     


Q ss_pred             -----CCccc---ccCCCC-CCCCHhHHHh-CCcEEEeCceEEEEECCCCE---EEeCCCcEEecceEEEccCC
Q 013952           63 -----PGFHV---CVGSGG-ERLLPEWYKE-KGIELILSTEIVRADIASKT---LLSATGLIFKYQILVIATGS  123 (433)
Q Consensus        63 -----~~~~~---~~~~~~-~~~~~~~~~~-~~v~~~~~~~v~~i~~~~~~---v~~~~~~~~~~d~lvlAtG~  123 (433)
                           |....   ...... .....+.++. .+++++.. +|.++..+++.   |.+.+|..+.+|.+|+|||.
T Consensus        78 N~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~-~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt  150 (392)
T PF01134_consen   78 NRSKGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQG-EVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT  150 (392)
T ss_dssp             STTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES--EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred             cccCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEc-ccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence                 00000   000000 0112222333 68899874 89999877764   57789999999999999998

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=98.53  E-value=9.5e-07  Score=85.88  Aligned_cols=60  Identities=23%  Similarity=0.295  Sum_probs=46.8

Q ss_pred             CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC---CCc--EEECCEEEEcccCccC
Q 013952          203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK---DGR--TLEADIVVVGVGGRPL  263 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~---~g~--~i~~d~vi~a~G~~p~  263 (433)
                      ...+.+.+.+.+++.||+++++++++++.. +++++..+...   +|+  .+.++.||+|+|-...
T Consensus       140 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~-e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~  204 (417)
T PF00890_consen  140 GKALIEALAKAAEEAGVDIRFNTRVTDLIT-EDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG  204 (417)
T ss_dssp             HHHHHHHHHHHHHHTTEEEEESEEEEEEEE-ETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred             HHHHHHHHHHHHhhcCeeeeccceeeeEEE-eCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence            467888899999999999999999999988 57788888776   443  5789999999996544

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>TIGR02730 carot_isom carotene isomerase

Probab=98.52  E-value=1.2e-07  Score=94.03  Aligned_cols=57  Identities=21%  Similarity=0.182  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013952          204 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR  261 (433)
Q Consensus       204 ~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~  261 (433)
                      ..+.+.+.+.+++.|++++++++|++|.. +++++..|.+.+|+++++|.||+++|..
T Consensus       229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~-~~~~~~gv~~~~g~~~~ad~vV~a~~~~  285 (493)
T TIGR02730       229 GQIAESLVKGLEKHGGQIRYRARVTKIIL-ENGKAVGVKLADGEKIYAKRIVSNATRW  285 (493)
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCeeeEEEe-cCCcEEEEEeCCCCEEEcCEEEECCChH
Confidence            57888999999999999999999999987 4577889999999899999999998853

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=98.52  E-value=3.4e-06  Score=84.42  Aligned_cols=60  Identities=18%  Similarity=0.176  Sum_probs=47.0

Q ss_pred             CCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC---CC--cEEECCEEEEcccCcc
Q 013952          202 FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK---DG--RTLEADIVVVGVGGRP  262 (433)
Q Consensus       202 ~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~---~g--~~i~~d~vi~a~G~~p  262 (433)
                      .+..+...+.+..+++|++++++++|+++.. +++++..|++.   ++  .++.++.||.|+|...
T Consensus       147 dp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~-~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa  211 (546)
T PRK11101        147 DPFRLTAANMLDAKEHGAQILTYHEVTGLIR-EGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWG  211 (546)
T ss_pred             CHHHHHHHHHHHHHhCCCEEEeccEEEEEEE-cCCeEEEEEEEEcCCCcEEEEECCEEEECCChhH
Confidence            3567777788888999999999999999987 35666666652   23  3799999999999654

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.52  E-value=3.8e-07  Score=66.02  Aligned_cols=78  Identities=19%  Similarity=0.414  Sum_probs=57.4

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhCCc
Q 013952            7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKGI   86 (433)
Q Consensus         7 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   86 (433)
                      +++|||||+.|+-+|..|++.|.+   |+++++...+.  +....                    .......+.+++.|+
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~---vtli~~~~~~~--~~~~~--------------------~~~~~~~~~l~~~gV   55 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKE---VTLIERSDRLL--PGFDP--------------------DAAKILEEYLRKRGV   55 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSE---EEEEESSSSSS--TTSSH--------------------HHHHHHHHHHHHTTE
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcE---EEEEeccchhh--hhcCH--------------------HHHHHHHHHHHHCCC
Confidence            589999999999999999999876   99999992111  00000                    002345677888999


Q ss_pred             EEEeCceEEEEECCCCE--EEeCCC
Q 013952           87 ELILSTEIVRADIASKT--LLSATG  109 (433)
Q Consensus        87 ~~~~~~~v~~i~~~~~~--v~~~~~  109 (433)
                      +++.++.+..+..++..  |+++||
T Consensus        56 ~v~~~~~v~~i~~~~~~~~V~~~~g   80 (80)
T PF00070_consen   56 EVHTNTKVKEIEKDGDGVEVTLEDG   80 (80)
T ss_dssp             EEEESEEEEEEEEETTSEEEEEETS
T ss_pred             EEEeCCEEEEEEEeCCEEEEEEecC
Confidence            99999999999876653  555554

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK11445 putative oxidoreductase; Provisional

Probab=98.51  E-value=5.2e-07  Score=85.39  Aligned_cols=39  Identities=21%  Similarity=0.233  Sum_probs=33.2

Q ss_pred             CCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhcc
Q 013952          288 ADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMAT  331 (433)
Q Consensus       288 ~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~  331 (433)
                      .++++.+||+++...+.+|     ..+..|...|..+++.+...
T Consensus       263 ~~~vvlVGDAAg~i~P~tG-----~Gi~~al~sa~~la~~l~~~  301 (351)
T PRK11445        263 KDNAFLIGEAAGFISPSSL-----EGISYALDSARILSEVLNKQ  301 (351)
T ss_pred             CCCEEEEEcccCccCCccC-----ccHHHHHHhHHHHHHHHHhc
Confidence            4789999999999888776     56788999999999998754

>PRK06126 hypothetical protein; Provisional

Probab=98.51  E-value=7.2e-07  Score=89.74  Aligned_cols=34  Identities=21%  Similarity=0.402  Sum_probs=32.0

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ..+||+|||||++|+++|..|+++|++   |+|+|+.
T Consensus         6 ~~~~VlIVGaGpaGL~~Al~La~~G~~---v~viEr~   39 (545)
T PRK06126          6 SETPVLIVGGGPVGLALALDLGRRGVD---SILVERK   39 (545)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCc---EEEEeCC
Confidence            458999999999999999999999998   9999988

>PRK07208 hypothetical protein; Provisional

Probab=98.51  E-value=2.1e-07  Score=92.21  Aligned_cols=58  Identities=24%  Similarity=0.327  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe--CCCc--EEECCEEEEcccCc
Q 013952          204 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL--KDGR--TLEADIVVVGVGGR  261 (433)
Q Consensus       204 ~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~--~~g~--~i~~d~vi~a~G~~  261 (433)
                      ..+.+.+.+.+++.|++++++++|++|..++++.+..+..  .+|+  ++.+|.||+++...
T Consensus       218 ~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~  279 (479)
T PRK07208        218 GQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLR  279 (479)
T ss_pred             chHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHH
Confidence            4677888889999999999999999998854444444443  2343  68999999998853

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=98.50  E-value=7.3e-07  Score=86.75  Aligned_cols=34  Identities=26%  Similarity=0.607  Sum_probs=32.1

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      .++||+||||||||++||..|++.|++   |+|+|+.
T Consensus        38 ~~~DViIVGaGPAG~~aA~~LA~~G~~---VlllEr~   71 (450)
T PLN00093         38 RKLRVAVIGGGPAGACAAETLAKGGIE---TFLIERK   71 (450)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCc---EEEEecC
Confidence            368999999999999999999999998   9999998

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.50  E-value=3.8e-07  Score=88.29  Aligned_cols=120  Identities=17%  Similarity=0.230  Sum_probs=71.7

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCC-C--CC-----CCCC---c---c------ccccCCC---CCCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEV-A--PY-----ERPA---L---S------KAYLFPE---GTAR   61 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~-~--~~-----~~~~---~---~------~~~~~~~---~~~~   61 (433)
                      .+||+|||||++|+++|..|++.|++   |+|+|+.. .  +.     ..+.   +   +      -+++..-   ....
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~---v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~   78 (405)
T PRK05714          2 RADLLIVGAGMVGSALALALQGSGLE---VLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASP   78 (405)
T ss_pred             CccEEEECccHHHHHHHHHHhcCCCE---EEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCcc
Confidence            48999999999999999999999987   99999872 1  11     0000   0   0      0000000   0000


Q ss_pred             CCCccc---------ccCC-----CC----------CCCCHhHHHhCCcEEEeCceEEEEECCCC--EEEeCCCcEEecc
Q 013952           62 LPGFHV---------CVGS-----GG----------ERLLPEWYKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQ  115 (433)
Q Consensus        62 ~~~~~~---------~~~~-----~~----------~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d  115 (433)
                      ...+..         .+..     ..          ...+.+.+.+.+++++.++.+.+++....  .|.+.+++++++|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~  158 (405)
T PRK05714         79 YSEMQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAP  158 (405)
T ss_pred             ceeEEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeC
Confidence            000000         0000     00          00112223456899999999998876554  3566788889999


Q ss_pred             eEEEccCCCccc
Q 013952          116 ILVIATGSTVLR  127 (433)
Q Consensus       116 ~lvlAtG~~~~~  127 (433)
                      .||.|.|.....
T Consensus       159 ~vVgAdG~~S~v  170 (405)
T PRK05714        159 LVVAADGANSAV  170 (405)
T ss_pred             EEEEecCCCchh
Confidence            999999976543

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.50  E-value=4e-07  Score=88.48  Aligned_cols=33  Identities=24%  Similarity=0.561  Sum_probs=31.6

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      .+||+|||||++|+++|..|++.|++   |+|+|+.
T Consensus        18 ~~dV~IvGaG~aGl~~A~~L~~~G~~---v~v~E~~   50 (415)
T PRK07364         18 TYDVAIVGGGIVGLTLAAALKDSGLR---IALIEAQ   50 (415)
T ss_pred             ccCEEEECcCHHHHHHHHHHhcCCCE---EEEEecC
Confidence            58999999999999999999999988   9999998

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=98.50  E-value=3.8e-06  Score=81.96  Aligned_cols=135  Identities=19%  Similarity=0.215  Sum_probs=89.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC------------------------------------------
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM------------------------------------------  198 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~------------------------------------------  198 (433)
                      ..++|+|||+|++|+-+|..|.+.|.+|+++++.+.+.                                          
T Consensus         9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f   88 (461)
T PLN02172          9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGY   88 (461)
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccC
Confidence            36899999999999999999999999999988653210                                          


Q ss_pred             ---C---C----------C-CCHHHHHHHHHHHHhcCcE--EEcCCeEEEEEecCCCcEEEEEeCCC--c--EEECCEEE
Q 013952          199 ---P---R----------L-FTADIAAFYEGYYANKGIK--IIKGTVAVGFTTNADGEVKEVKLKDG--R--TLEADIVV  255 (433)
Q Consensus       199 ---~---~----------~-~~~~~~~~l~~~l~~~GV~--v~~~~~v~~i~~~~~g~~~~v~~~~g--~--~i~~d~vi  255 (433)
                         +   .          + -..++.+.+++..+..|+.  ++++++|.+++.  .+....|.+.++  .  +..+|.||
T Consensus        89 ~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~--~~~~w~V~~~~~~~~~~~~~~d~VI  166 (461)
T PLN02172         89 RDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEP--VDGKWRVQSKNSGGFSKDEIFDAVV  166 (461)
T ss_pred             CCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEee--cCCeEEEEEEcCCCceEEEEcCEEE
Confidence               0   0          0 0146777888888889988  899999999987  333456666432  2  46799999


Q ss_pred             Eccc--CccChhhhhcccccCCCcEEeCCCCCC----CCCCeEEcCccc
Q 013952          256 VGVG--GRPLISLFKGQVAENKGGIETDDFFKT----SADDVYAVGDVA  298 (433)
Q Consensus       256 ~a~G--~~p~~~~~~~~~~~~~g~i~vd~~~~t----~~~~vfa~Gd~~  298 (433)
                      +|+|  ..|+..-++ ++..-.|.+.--..++.    ..++|.++|--.
T Consensus       167 vAtG~~~~P~~P~ip-G~~~f~G~~iHs~~yr~~~~~~gk~VvVVG~G~  214 (461)
T PLN02172        167 VCNGHYTEPNVAHIP-GIKSWPGKQIHSHNYRVPDPFKNEVVVVIGNFA  214 (461)
T ss_pred             EeccCCCCCcCCCCC-CcccCCceEEEecccCCccccCCCEEEEECCCc
Confidence            9999  566554332 22111122211112232    457788888543

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=98.50  E-value=1.9e-07  Score=83.18  Aligned_cols=60  Identities=17%  Similarity=0.185  Sum_probs=50.9

Q ss_pred             CHHHHHHHHHHHHhcCcEEEcCCeEEEEEe-cCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013952          203 TADIAAFYEGYYANKGIKIIKGTVAVGFTT-NADGEVKEVKLKDGRTLEADIVVVGVGGRP  262 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~-~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p  262 (433)
                      .....+.++..+++.|+.|+.+..+..++. ++++....|.+.+|..+.++.+|+++|..-
T Consensus       152 a~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi  212 (399)
T KOG2820|consen  152 AAKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWI  212 (399)
T ss_pred             HHHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHH
Confidence            467778899999999999999999988863 345667889999998899999999999653

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=98.49  E-value=7.1e-07  Score=85.92  Aligned_cols=33  Identities=27%  Similarity=0.621  Sum_probs=31.4

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ++||+|||||++|+++|..|++.|++   |+|+|+.
T Consensus         5 ~~dv~IvGgG~aGl~~A~~L~~~G~~---v~v~E~~   37 (388)
T PRK07608          5 KFDVVVVGGGLVGASLALALAQSGLR---VALLAPR   37 (388)
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCe---EEEEecC
Confidence            58999999999999999999999987   9999998

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.49  E-value=4.3e-07  Score=87.67  Aligned_cols=43  Identities=19%  Similarity=0.258  Sum_probs=34.3

Q ss_pred             CCcEEEeCceEEEEECCCC--EEEeCCCcEEecceEEEccCCCcc
Q 013952           84 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVL  126 (433)
Q Consensus        84 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~  126 (433)
                      .+++++.++.+.++...+.  .+.+.++.++.+|.||.|.|....
T Consensus       126 ~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~  170 (395)
T PRK05732        126 PGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSHSA  170 (395)
T ss_pred             CCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCChh
Confidence            4789999999998875554  356677778999999999997654

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=98.47  E-value=4.9e-06  Score=81.42  Aligned_cols=65  Identities=18%  Similarity=0.141  Sum_probs=50.5

Q ss_pred             CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC--CCc--EEECCEEEEccc-CccChhhh
Q 013952          203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK--DGR--TLEADIVVVGVG-GRPLISLF  267 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~--~g~--~i~~d~vi~a~G-~~p~~~~~  267 (433)
                      ...+.+.+.+.+++.|++++++++++++..++++++..+...  +++  .+.++.||+|+| +..|.++.
T Consensus       129 g~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~n~~m~  198 (439)
T TIGR01813       129 GAEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGSNKEMI  198 (439)
T ss_pred             HHHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCCCHHHH
Confidence            467888899999999999999999999987556777766553  343  478999999999 55555544

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.47  E-value=9.9e-06  Score=81.80  Aligned_cols=60  Identities=15%  Similarity=0.161  Sum_probs=46.9

Q ss_pred             CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCC---CcEEEEEe---CCCc--EEECCEEEEcccCcc
Q 013952          203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD---GEVKEVKL---KDGR--TLEADIVVVGVGGRP  262 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~---g~~~~v~~---~~g~--~i~~d~vi~a~G~~p  262 (433)
                      ...+.+.+.+.+++.||+++.++.+.++..+++   |++.++..   .+++  .+.++.||+|||...
T Consensus       139 G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~  206 (583)
T PRK08205        139 GHMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG  206 (583)
T ss_pred             HHHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence            356778888888899999999999999976332   77777754   3554  578999999999543

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.47  E-value=1.3e-06  Score=86.70  Aligned_cols=37  Identities=24%  Similarity=0.572  Sum_probs=34.0

Q ss_pred             CCCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ||+.++||+|||||+.|+++|+.|+++|++   |+|+|+.
T Consensus         2 ~~~~~~DVvIIGGGi~G~~~A~~la~rG~~---V~LlEk~   38 (502)
T PRK13369          2 AEPETYDLFVIGGGINGAGIARDAAGRGLK---VLLCEKD   38 (502)
T ss_pred             CCCcccCEEEECCCHHHHHHHHHHHhCCCc---EEEEECC
Confidence            445579999999999999999999999998   9999998

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=98.47  E-value=1.1e-06  Score=87.33  Aligned_cols=57  Identities=18%  Similarity=0.183  Sum_probs=46.3

Q ss_pred             CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCC-----cEEECCEEEEcccC
Q 013952          203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG-----RTLEADIVVVGVGG  260 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g-----~~i~~d~vi~a~G~  260 (433)
                      ...+.+.+.+.+++.|++++++++|++|.. ++++...+.+.++     +++.+|.||+++..
T Consensus       231 ~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~-~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~  292 (492)
T TIGR02733       231 MQTLSDRLVEALKRDGGNLLTGQRVTAIHT-KGGRAGWVVVVDSRKQEDLNVKADDVVANLPP  292 (492)
T ss_pred             HHHHHHHHHHHHHhcCCEEeCCceEEEEEE-eCCeEEEEEEecCCCCceEEEECCEEEECCCH
Confidence            467889999999999999999999999987 3455555665554     57899999999885

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=98.46  E-value=5.9e-07  Score=90.31  Aligned_cols=33  Identities=24%  Similarity=0.423  Sum_probs=31.5

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ++||+||||||+|+++|..|++.|++   |+|||+.
T Consensus        23 ~~dVlIVGaGpaGl~lA~~L~~~G~~---v~viE~~   55 (547)
T PRK08132         23 RHPVVVVGAGPVGLALAIDLAQQGVP---VVLLDDD   55 (547)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCc---EEEEeCC
Confidence            57999999999999999999999998   9999998

>PRK07121 hypothetical protein; Validated

Probab=98.46  E-value=6.1e-06  Score=81.84  Aligned_cols=65  Identities=25%  Similarity=0.256  Sum_probs=49.6

Q ss_pred             CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCC-C--cEEEC-CEEEEcccC-ccChhhh
Q 013952          203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD-G--RTLEA-DIVVVGVGG-RPLISLF  267 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~-g--~~i~~-d~vi~a~G~-~p~~~~~  267 (433)
                      ...+.+.+.+.+++.|++++++++++++..++++++..|...+ +  ..+.+ +.||+|+|- ..|.+++
T Consensus       176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~N~em~  245 (492)
T PRK07121        176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFAMNREMV  245 (492)
T ss_pred             hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcCcCHHHH
Confidence            4567788888899999999999999999874457887776643 3  25788 999999994 4444444

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=98.45  E-value=7.2e-06  Score=80.66  Aligned_cols=39  Identities=38%  Similarity=0.543  Sum_probs=32.3

Q ss_pred             EEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013952          220 KIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG  260 (433)
Q Consensus       220 ~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~  260 (433)
                      +++++++|++|+..+++  ..|.+.+|+++.+|.||+|+..
T Consensus       235 ~i~~~~~V~~i~~~~~~--~~v~~~~g~~~~~d~vI~a~p~  273 (451)
T PRK11883        235 TIHKGTPVTKIDKSGDG--YEIVLSNGGEIEADAVIVAVPH  273 (451)
T ss_pred             eEEeCCEEEEEEEcCCe--EEEEECCCCEEEcCEEEECCCH
Confidence            89999999999873333  5677888889999999999884

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=98.45  E-value=2.1e-07  Score=90.34  Aligned_cols=113  Identities=24%  Similarity=0.242  Sum_probs=28.0

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccc--ccCCC----------------CCCCCCCc---
Q 013952            7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKA--YLFPE----------------GTARLPGF---   65 (433)
Q Consensus         7 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~--~~~~~----------------~~~~~~~~---   65 (433)
                      ||||||||+||++||..+++.|.+   |+|||+...+-.. ....+  .+...                ........   
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~---VlLiE~~~~lGG~-~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~   76 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAK---VLLIEKGGFLGGM-ATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQE   76 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS----EEEE-SSSSSTGG-GGGSSS-EETTEEHHHHHHHHHHHHHHHST---------
T ss_pred             CEEEECccHHHHHHHHHHHHCCCE---EEEEECCccCCCc-ceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccc
Confidence            899999999999999999999998   9999999211100 00000  00000                00000000   


Q ss_pred             ---c----cccCCC-CCCCCHhHHHhCCcEEEeCceEEEEECCCCE---EEeCC---CcEEecceEEEccCC
Q 013952           66 ---H----VCVGSG-GERLLPEWYKEKGIELILSTEIVRADIASKT---LLSAT---GLIFKYQILVIATGS  123 (433)
Q Consensus        66 ---~----~~~~~~-~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~---v~~~~---~~~~~~d~lvlAtG~  123 (433)
                         .    ..+... ....+.+++.+.|++++.++.+..+..++..   |.+.+   ..++.++.+|-|||-
T Consensus        77 ~~~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~  148 (428)
T PF12831_consen   77 DRYGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGD  148 (428)
T ss_dssp             ------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence               0    001111 1234556667789999999999988877643   34433   467999999999993

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=98.44  E-value=7.7e-07  Score=85.56  Aligned_cols=32  Identities=25%  Similarity=0.616  Sum_probs=30.7

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      |||+||||||||+++|+.|++.|++   |+|+|+.
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~G~~---V~l~E~~   32 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARAGIE---TILLERA   32 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCc---EEEEECC
Confidence            7999999999999999999999998   9999987

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=98.44  E-value=9.4e-07  Score=86.12  Aligned_cols=98  Identities=18%  Similarity=0.288  Sum_probs=74.3

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhCC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKG   85 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (433)
                      .+|+|||||++|+.+|..|++.|.+   |+++++......+ .             +.       ......+.+.+++.|
T Consensus       138 ~~vvViGgG~~g~e~A~~l~~~g~~---Vtli~~~~~~~~~-~-------------~~-------~~~~~~~~~~l~~~g  193 (427)
T TIGR03385       138 ENVVIIGGGYIGIEMAEALRERGKN---VTLIHRSERILNK-L-------------FD-------EEMNQIVEEELKKHE  193 (427)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCc---EEEEECCcccCcc-c-------------cC-------HHHHHHHHHHHHHcC
Confidence            6899999999999999999998876   9999987111000 0             00       000123456778889


Q ss_pred             cEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccc
Q 013952           86 IELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLR  127 (433)
Q Consensus        86 v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~  127 (433)
                      ++++.++.+..++.++..+.+.+++++.+|.+++|+|..|..
T Consensus       194 V~v~~~~~v~~i~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~  235 (427)
T TIGR03385       194 INLRLNEEVDSIEGEERVKVFTSGGVYQADMVILATGIKPNS  235 (427)
T ss_pred             CEEEeCCEEEEEecCCCEEEEcCCCEEEeCEEEECCCccCCH
Confidence            999999999999876665566778899999999999998764

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=98.43  E-value=1.1e-06  Score=88.20  Aligned_cols=33  Identities=21%  Similarity=0.313  Sum_probs=31.6

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      .+||+||||||+|+++|..|++.|++   |+|+|+.
T Consensus        10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~---v~v~Er~   42 (538)
T PRK06183         10 DTDVVIVGAGPVGLTLANLLGQYGVR---VLVLERW   42 (538)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCc---EEEEecC
Confidence            58999999999999999999999988   9999998

>PRK06753 hypothetical protein; Provisional

Probab=98.43  E-value=3e-06  Score=81.08  Aligned_cols=117  Identities=17%  Similarity=0.199  Sum_probs=67.8

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCC--cc---------ccccCC--CCCCCCCCcccc--cC
Q 013952            7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPA--LS---------KAYLFP--EGTARLPGFHVC--VG   70 (433)
Q Consensus         7 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~--~~---------~~~~~~--~~~~~~~~~~~~--~~   70 (433)
                      ||+|||||++|+++|..|++.|++   |+|+|+. ........  +.         -+++..  ........+...  .+
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~~g~~---v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g   78 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQGHE---VKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKG   78 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCc---EEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCC
Confidence            899999999999999999999998   9999988 21100000  00         000000  000000000000  00


Q ss_pred             -----------CCC----CCCCHhHHHh--CCcEEEeCceEEEEECCCC--EEEeCCCcEEecceEEEccCCCcc
Q 013952           71 -----------SGG----ERLLPEWYKE--KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVL  126 (433)
Q Consensus        71 -----------~~~----~~~~~~~~~~--~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~  126 (433)
                                 ...    ...+...+.+  .+.+++.++.+++++.++.  .+++.++.++.+|.||-|.|....
T Consensus        79 ~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S~  153 (373)
T PRK06753         79 TLLNKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSK  153 (373)
T ss_pred             CEEeecccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcchH
Confidence                       000    0011222222  2456888999999976555  356678888999999999996543

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=98.43  E-value=1.6e-06  Score=82.44  Aligned_cols=111  Identities=16%  Similarity=0.216  Sum_probs=65.2

Q ss_pred             eEEEECCCHHHHHHHHHHHHc--CCCCCcEEEEcCC-CCCCCCCCccccccCCC------------CCCCCCCcccccCC
Q 013952            7 KYVILGGGVSAGYAAREFAKQ--GVKPGELAIISKE-VAPYERPALSKAYLFPE------------GTARLPGFHVCVGS   71 (433)
Q Consensus         7 dvvIIGgG~aGl~aA~~l~~~--g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~   71 (433)
                      ||+|||||+||+++|..|++.  |++   |+++|+. ...-++..   .++...            ..+..+........
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~---V~lle~~~~~~~~~tw---~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~   74 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFR---IRVIEAGRTIGGNHTW---SFFDSDLSDAQHAWLADLVQTDWPGYEVRFPK   74 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCe---EEEEeCCCCCCCcccc---eecccccchhhhhhhhhhheEeCCCCEEECcc
Confidence            799999999999999999987  776   9999998 32221111   111100            00111111111100


Q ss_pred             C------CC-----CCCHhH-HHhCCcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCc
Q 013952           72 G------GE-----RLLPEW-YKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTV  125 (433)
Q Consensus        72 ~------~~-----~~~~~~-~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~  125 (433)
                      .      .+     ..+.+. ++..+..+..+..|..++.+  .|++.+|++++++.||-|.|..+
T Consensus        75 ~~~~l~~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~~--~v~l~dg~~~~A~~VI~A~G~~s  138 (370)
T TIGR01789        75 YRRKLKTAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDAD--GVDLAPGTRINARSVIDCRGFKP  138 (370)
T ss_pred             hhhhcCCCceEEEHHHHHHHHHHhhcccEEecCEEEEEeCC--EEEECCCCEEEeeEEEECCCCCC
Confidence            0      00     011122 22224446667788888543  46678889999999999999764

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=98.43  E-value=5.8e-07  Score=87.55  Aligned_cols=59  Identities=36%  Similarity=0.649  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccC
Q 013952          204 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL  263 (433)
Q Consensus       204 ~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~  263 (433)
                      ..+.+.|.+..++.||+++.++ |..+..+++|.+..|.+.+|+++++|.+|=|+|++..
T Consensus       154 ~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~  212 (454)
T PF04820_consen  154 AKFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSL  212 (454)
T ss_dssp             HHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-C
T ss_pred             HHHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccch
Confidence            4677888888999999999885 7777776788899999999999999999999998543

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=98.43  E-value=3.1e-07  Score=77.40  Aligned_cols=33  Identities=33%  Similarity=0.531  Sum_probs=28.9

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      .+||+||||||+||+||++|++.|++   |+++|++
T Consensus        17 ~~DV~IVGaGpaGl~aA~~La~~g~k---V~v~E~~   49 (230)
T PF01946_consen   17 EYDVAIVGAGPAGLTAAYYLAKAGLK---VAVIERK   49 (230)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHTS----EEEEESS
T ss_pred             cCCEEEECCChhHHHHHHHHHHCCCe---EEEEecC
Confidence            58999999999999999999999998   9999999

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=98.43  E-value=6e-06  Score=81.47  Aligned_cols=40  Identities=30%  Similarity=0.411  Sum_probs=33.1

Q ss_pred             cEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013952          219 IKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG  260 (433)
Q Consensus       219 V~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~  260 (433)
                      .+++++++|++|+.++++  ..|++.+|+++.+|.||+|++.
T Consensus       238 ~~i~~~~~V~~I~~~~~~--~~v~~~~g~~~~ad~VI~t~P~  277 (462)
T TIGR00562       238 TKVYKGTKVTKLSHRGSN--YTLELDNGVTVETDSVVVTAPH  277 (462)
T ss_pred             CeEEcCCeEEEEEecCCc--EEEEECCCcEEEcCEEEECCCH
Confidence            789999999999874333  4677788888999999999884

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PRK07588 hypothetical protein; Provisional

Probab=98.43  E-value=1.5e-06  Score=83.81  Aligned_cols=119  Identities=16%  Similarity=0.131  Sum_probs=69.6

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CC-CCCCC-Cc-cc--------cc----cCCC-CCCC-----CC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VA-PYERP-AL-SK--------AY----LFPE-GTAR-----LP   63 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~-~~~~~-~~-~~--------~~----~~~~-~~~~-----~~   63 (433)
                      .||+|||||++|+++|..|++.|++   |+|+|+. .. ...+. .+ ..        ++    .... ....     ..
T Consensus         1 ~~V~IVGgG~aGl~~A~~L~~~G~~---v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~   77 (391)
T PRK07588          1 MKVAISGAGIAGPTLAYWLRRYGHE---PTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPT   77 (391)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCc---eEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCC
Confidence            3899999999999999999999987   9999988 21 10000 00 00        00    0000 0000     00


Q ss_pred             C-----ccc-----ccCCCCCC----CCHhHH---HhCCcEEEeCceEEEEECCCCE--EEeCCCcEEecceEEEccCCC
Q 013952           64 G-----FHV-----CVGSGGER----LLPEWY---KEKGIELILSTEIVRADIASKT--LLSATGLIFKYQILVIATGST  124 (433)
Q Consensus        64 ~-----~~~-----~~~~~~~~----~~~~~~---~~~~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d~lvlAtG~~  124 (433)
                      +     +..     ..+.....    .+...+   ...+++++.++.|..++.++..  |.+++|+++++|.||-|.|..
T Consensus        78 g~~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~  157 (391)
T PRK07588         78 GRRKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDGQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLH  157 (391)
T ss_pred             CCEEEEecHHHccccCCCceEEEEHHHHHHHHHHhhhcCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCC
Confidence            0     000     00000000    011111   1346899999999999876654  566788889999999999976


Q ss_pred             ccc
Q 013952          125 VLR  127 (433)
Q Consensus       125 ~~~  127 (433)
                      ...
T Consensus       158 S~v  160 (391)
T PRK07588        158 SHV  160 (391)
T ss_pred             ccc
Confidence            543

>PRK06847 hypothetical protein; Provisional

Probab=98.43  E-value=4.4e-06  Score=79.99  Aligned_cols=102  Identities=25%  Similarity=0.310  Sum_probs=79.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC------------------------------------------
Q 013952          162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP------------------------------------------  199 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~------------------------------------------  199 (433)
                      .++|+|||+|+.|+-+|..|++.|.+|+++++.+.+..                                          
T Consensus         4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g~   83 (375)
T PRK06847          4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDGT   83 (375)
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCCC
Confidence            56899999999999999999999999999986532100                                          


Q ss_pred             ---C----------------CCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013952          200 ---R----------------LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG  260 (433)
Q Consensus       200 ---~----------------~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~  260 (433)
                         .                ....++.+.+.+.+++.|+++++++++.+++.+++  ...+.+.+|+++.+|.||.|.|.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~--~~~v~~~~g~~~~ad~vI~AdG~  161 (375)
T PRK06847         84 LLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDD--GVTVTFSDGTTGRYDLVVGADGL  161 (375)
T ss_pred             EEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCC--EEEEEEcCCCEEEcCEEEECcCC
Confidence               0                00134556677777888999999999999987332  35678888989999999999998


Q ss_pred             ccChh
Q 013952          261 RPLIS  265 (433)
Q Consensus       261 ~p~~~  265 (433)
                      ++...
T Consensus       162 ~s~~r  166 (375)
T PRK06847        162 YSKVR  166 (375)
T ss_pred             Ccchh
Confidence            77654

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=98.42  E-value=6.7e-07  Score=85.89  Aligned_cols=117  Identities=20%  Similarity=0.247  Sum_probs=69.2

Q ss_pred             eEEEECCCHHHHHHHHHHHHcC-CCCCcEEEEcCC-CCCCC-----CC-Ccc---------ccccCCC--CCCCCCCccc
Q 013952            7 KYVILGGGVSAGYAAREFAKQG-VKPGELAIISKE-VAPYE-----RP-ALS---------KAYLFPE--GTARLPGFHV   67 (433)
Q Consensus         7 dvvIIGgG~aGl~aA~~l~~~g-~~~~~V~lie~~-~~~~~-----~~-~~~---------~~~~~~~--~~~~~~~~~~   67 (433)
                      ||+||||||+|+++|..|+++| ++   |+|+|+. .....     +. .+.         -++...-  ..........
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~~---v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~   77 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKIK---IALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHV   77 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCce---EEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEE
Confidence            7999999999999999999999 88   9999998 21111     00 000         0000000  0000000000


Q ss_pred             c---------c-----CCCC----------CCCCHhHHHh-CCcEEEeCceEEEEECCCC--EEEeCCCcEEecceEEEc
Q 013952           68 C---------V-----GSGG----------ERLLPEWYKE-KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIA  120 (433)
Q Consensus        68 ~---------~-----~~~~----------~~~~~~~~~~-~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlA  120 (433)
                      .         .     +...          ...+.+.+.+ .+++++.++.++++..+..  ++.+.++.++.+|.||.|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~A  157 (382)
T TIGR01984        78 SDQGHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAA  157 (382)
T ss_pred             EcCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEe
Confidence            0         0     0000          0011122233 4899999999999875544  456677888999999999


Q ss_pred             cCCCcc
Q 013952          121 TGSTVL  126 (433)
Q Consensus       121 tG~~~~  126 (433)
                      .|....
T Consensus       158 dG~~S~  163 (382)
T TIGR01984       158 DGANSK  163 (382)
T ss_pred             cCCChH
Confidence            997643

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.42  E-value=1.9e-06  Score=84.46  Aligned_cols=101  Identities=22%  Similarity=0.364  Sum_probs=73.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCC--CeEEEEccCCccC------C----CCC--CHHHHHHHHHHHHhcCcEEEcCCeEE
Q 013952          163 GKAVVVGGGYIGLELSAALKINN--IDVSMVYPEPWCM------P----RLF--TADIAAFYEGYYANKGIKIIKGTVAV  228 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g--~~V~li~~~~~~~------~----~~~--~~~~~~~l~~~l~~~GV~v~~~~~v~  228 (433)
                      ++++|||+|+.|+.+|..|++.+  .+|+++++.+.+.      +    ...  ..++.....+.+++.||+++.++.|.
T Consensus         1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~   80 (444)
T PRK09564          1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVV   80 (444)
T ss_pred             CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEE
Confidence            37999999999999999999875  4899999876531      1    101  12233344566788899999999999


Q ss_pred             EEEecCCCcEEEEEe-CCCcEEE--CCEEEEcccCccChh
Q 013952          229 GFTTNADGEVKEVKL-KDGRTLE--ADIVVVGVGGRPLIS  265 (433)
Q Consensus       229 ~i~~~~~g~~~~v~~-~~g~~i~--~d~vi~a~G~~p~~~  265 (433)
                      +++.  +++...+.. .+++.++  +|.+|+|||.+|+..
T Consensus        81 ~id~--~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~  118 (444)
T PRK09564         81 KVDA--KNKTITVKNLKTGSIFNDTYDKLMIATGARPIIP  118 (444)
T ss_pred             EEEC--CCCEEEEEECCCCCEEEecCCEEEECCCCCCCCC
Confidence            9986  444334432 2355666  999999999988654

>PLN02661 Putative thiazole synthesis

Probab=98.42  E-value=9e-07  Score=81.46  Aligned_cols=33  Identities=36%  Similarity=0.483  Sum_probs=30.3

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHc-CCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQ-GVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~-g~~~~~V~lie~~   40 (433)
                      .+||+|||||++|++||++|++. |++   |+|||+.
T Consensus        92 ~~DVlIVGaG~AGl~AA~~La~~~g~k---V~viEk~  125 (357)
T PLN02661         92 DTDVVIVGAGSAGLSCAYELSKNPNVK---VAIIEQS  125 (357)
T ss_pred             cCCEEEECCHHHHHHHHHHHHHcCCCe---EEEEecC
Confidence            57999999999999999999976 666   9999998

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=98.42  E-value=1.6e-06  Score=82.63  Aligned_cols=51  Identities=20%  Similarity=0.153  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013952          205 DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG  260 (433)
Q Consensus       205 ~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~  260 (433)
                      .+.+.+.+.++..   ++++++|++|..+  +.-..+.+.+|.++.+|.||+++..
T Consensus       216 ~l~~al~~~l~~~---i~~~~~V~~i~~~--~~~~~~~~~~g~~~~~D~VI~t~p~  266 (444)
T COG1232         216 SLIEALAEKLEAK---IRTGTEVTKIDKK--GAGKTIVDVGGEKITADGVISTAPL  266 (444)
T ss_pred             HHHHHHHHHhhhc---eeecceeeEEEEc--CCccEEEEcCCceEEcceEEEcCCH
Confidence            4455555555544   8999999999983  3335677888889999999998774

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=98.41  E-value=2e-05  Score=77.54  Aligned_cols=59  Identities=27%  Similarity=0.487  Sum_probs=44.6

Q ss_pred             CHHHHHHHHHHHHhcC-cEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEECCEEEEcccCcc
Q 013952          203 TADIAAFYEGYYANKG-IKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGGRP  262 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~G-V~v~~~~~v~~i~~~~~g~~~~v~~---~~g~--~i~~d~vi~a~G~~p  262 (433)
                      ...+.+.+.+.+++.| ++++++++|.+++.++++.. .+.+   .+|+  ++.|+.||+|+|...
T Consensus       182 ~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~-~v~~~~~~~G~~~~i~A~~VVvaAGg~s  246 (494)
T PRK05257        182 FGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSW-TVTVKDLKTGEKRTVRAKFVFIGAGGGA  246 (494)
T ss_pred             HHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCE-EEEEEEcCCCceEEEEcCEEEECCCcch
Confidence            4677888888888876 89999999999987445432 3333   3453  689999999999754

>PRK06996 hypothetical protein; Provisional

Probab=98.41  E-value=9.5e-07  Score=85.22  Aligned_cols=122  Identities=20%  Similarity=0.168  Sum_probs=69.8

Q ss_pred             CCCCcCeEEEECCCHHHHHHHHHHHHcCC-CCCcEEEEcCC-CCC-CC--CCC-c---------cccccCCCCCCCCCCc
Q 013952            1 MAEKSFKYVILGGGVSAGYAAREFAKQGV-KPGELAIISKE-VAP-YE--RPA-L---------SKAYLFPEGTARLPGF   65 (433)
Q Consensus         1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g~-~~~~V~lie~~-~~~-~~--~~~-~---------~~~~~~~~~~~~~~~~   65 (433)
                      |....+||+||||||+|+++|..|++.|. +..+|+|+|+. ... ..  |.. +         .-+.+.. ....+...
T Consensus         7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~-~~~~~~~~   85 (398)
T PRK06996          7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPA-DATPIEHI   85 (398)
T ss_pred             ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchh-cCCcccEE
Confidence            44557899999999999999999999873 11239999997 211 10  100 0         0000000 00000000


Q ss_pred             cc-----------c---cCC----------CCCCCCHhHHHhCCcEEEeCceEEEEECCCCE--EEeCCC---cEEecce
Q 013952           66 HV-----------C---VGS----------GGERLLPEWYKEKGIELILSTEIVRADIASKT--LLSATG---LIFKYQI  116 (433)
Q Consensus        66 ~~-----------~---~~~----------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~~~~~---~~~~~d~  116 (433)
                      ..           .   ...          .....+.+.+.+.++++..++++..+......  +.+.++   +++++|.
T Consensus        86 ~~~~~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~l  165 (398)
T PRK06996         86 HVSQRGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARI  165 (398)
T ss_pred             EEecCCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeE
Confidence            00           0   000          00112233345578999999998888655554  445543   5899999


Q ss_pred             EEEccCC
Q 013952          117 LVIATGS  123 (433)
Q Consensus       117 lvlAtG~  123 (433)
                      ||-|.|.
T Consensus       166 vIgADG~  172 (398)
T PRK06996        166 AVQAEGG  172 (398)
T ss_pred             EEECCCC
Confidence            9999994

>PRK06175 L-aspartate oxidase; Provisional

Probab=98.40  E-value=1.1e-06  Score=85.26  Aligned_cols=55  Identities=24%  Similarity=0.210  Sum_probs=40.0

Q ss_pred             CCCcEEeCCCCCCCCCCeEEcCcccc-ccccccCcccc-cccHHHHHHHHHHHHHHHhcc
Q 013952          274 NKGGIETDDFFKTSADDVYAVGDVAT-FPMKLYREMRR-VEHVDHARKSAEQAVKTIMAT  331 (433)
Q Consensus       274 ~~g~i~vd~~~~t~~~~vfa~Gd~~~-~~~~~~~~~~~-~~~~~~A~~~g~~aa~~i~~~  331 (433)
                      ..|+|.||...||++||+||+|.|++ ..   +|..+. -.+...+.--|+.|++++...
T Consensus       330 t~GGi~vd~~~~t~i~gLYAaGE~a~~g~---hG~nrl~gnsl~~~lvfGr~Ag~~a~~~  386 (433)
T PRK06175        330 FMGGIKVDLNSKTSMKNLYAFGEVSCTGV---HGANRLASNSLLEGLVFSKRGAEKINSE  386 (433)
T ss_pred             ecCCEEECCCccccCCCeEecccccccCC---CccccchhHHHHHHHHHHHHHHHHHHHh
Confidence            56999999999999999999999974 32   222111 134566777888899888653

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=98.40  E-value=3.9e-07  Score=86.43  Aligned_cols=32  Identities=28%  Similarity=0.529  Sum_probs=29.1

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      +||+|||||++|+++|..|+++|++   |+|+|+.
T Consensus         2 ~dV~IvGaG~aGl~~A~~L~~~G~~---v~i~E~~   33 (356)
T PF01494_consen    2 YDVAIVGAGPAGLAAALALARAGID---VTIIERR   33 (356)
T ss_dssp             EEEEEE--SHHHHHHHHHHHHTTCE---EEEEESS
T ss_pred             ceEEEECCCHHHHHHHHHHHhcccc---cccchhc
Confidence            7999999999999999999999998   9999998

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK05868 hypothetical protein; Validated

Probab=98.40  E-value=1.6e-06  Score=82.80  Aligned_cols=118  Identities=14%  Similarity=0.160  Sum_probs=69.5

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCC-CCCC-Cc---------cccccCC--CCCCCCCCccc----
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAP-YERP-AL---------SKAYLFP--EGTARLPGFHV----   67 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~-~~~~-~~---------~~~~~~~--~~~~~~~~~~~----   67 (433)
                      +||+|||||++|+++|..|++.|++   |+|+|+. ... .... .+         .-+++..  ...........    
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~~G~~---v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~   78 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGRHGYS---VTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRD   78 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCC---EEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCC
Confidence            3899999999999999999999988   9999988 211 0000 00         0000000  00000000000    


Q ss_pred             -----------ccCCC----CC----CCCHhHHH---hCCcEEEeCceEEEEECCCC--EEEeCCCcEEecceEEEccCC
Q 013952           68 -----------CVGSG----GE----RLLPEWYK---EKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGS  123 (433)
Q Consensus        68 -----------~~~~~----~~----~~~~~~~~---~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~  123 (433)
                                 ..+..    ..    ..+.+.+.   ..+++++.+++++.++.+..  ++++.++.++++|.||-|.|.
T Consensus        79 g~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~  158 (372)
T PRK05868         79 GNELFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGL  158 (372)
T ss_pred             CCEEeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCC
Confidence                       00000    00    01112222   35789999999999876554  466788889999999999997


Q ss_pred             Ccc
Q 013952          124 TVL  126 (433)
Q Consensus       124 ~~~  126 (433)
                      ...
T Consensus       159 ~S~  161 (372)
T PRK05868        159 HSN  161 (372)
T ss_pred             Cch
Confidence            543

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.40  E-value=1.1e-06  Score=88.61  Aligned_cols=35  Identities=29%  Similarity=0.454  Sum_probs=30.1

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      .+||||||||.||++||.++++.|. ..+|+|+||.
T Consensus         3 ~~DVlVIG~G~AGl~AAi~aa~~g~-g~~V~vleK~   37 (575)
T PRK05945          3 EHDVVIVGGGLAGCRAALEIKRLDP-SLDVAVVAKT   37 (575)
T ss_pred             cccEEEECccHHHHHHHHHHHHhcC-CCcEEEEecc
Confidence            6899999999999999999998751 1239999998

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.40  E-value=9.8e-07  Score=85.34  Aligned_cols=60  Identities=23%  Similarity=0.182  Sum_probs=48.3

Q ss_pred             CCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCc-----EEECCEEEEcccCccC
Q 013952          202 FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGR-----TLEADIVVVGVGGRPL  263 (433)
Q Consensus       202 ~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~-----~i~~d~vi~a~G~~p~  263 (433)
                      .|..+.........++|-+++..++|+++.. +++ +..|+..|.+     ++.++.||.|+|....
T Consensus       162 ddaRLv~~~a~~A~~~Ga~il~~~~v~~~~r-e~~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d  226 (532)
T COG0578         162 DDARLVAANARDAAEHGAEILTYTRVESLRR-EGG-VWGVEVEDRETGETYEIRARAVVNAAGPWVD  226 (532)
T ss_pred             chHHHHHHHHHHHHhcccchhhcceeeeeee-cCC-EEEEEEEecCCCcEEEEEcCEEEECCCccHH
Confidence            3567777788888999999999999999987 344 7888876532     5899999999997643

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=98.39  E-value=1e-06  Score=84.64  Aligned_cols=117  Identities=25%  Similarity=0.271  Sum_probs=69.7

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC-------CCC-cc---------ccccCCC---CCCCCCCcc
Q 013952            7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYE-------RPA-LS---------KAYLFPE---GTARLPGFH   66 (433)
Q Consensus         7 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~-------~~~-~~---------~~~~~~~---~~~~~~~~~   66 (433)
                      ||+|||||++|+++|..|+++|++   |+|+|+...+..       +.. +.         -+++..-   .........
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~~---v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~   77 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGLK---IALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIH   77 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCCE---EEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEE
Confidence            799999999999999999999987   999999922111       100 00         0000000   000000000


Q ss_pred             c---------ccCC-----C----------CCCCCHhHHHhCC-cEEEeCceEEEEECCCCE--EEeCCCcEEecceEEE
Q 013952           67 V---------CVGS-----G----------GERLLPEWYKEKG-IELILSTEIVRADIASKT--LLSATGLIFKYQILVI  119 (433)
Q Consensus        67 ~---------~~~~-----~----------~~~~~~~~~~~~~-v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d~lvl  119 (433)
                      .         ....     .          ....+.+.+.+.+ ++++.++.|+.++..+..  +.++++.++.+|.+|.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~  157 (385)
T TIGR01988        78 VSDGGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVG  157 (385)
T ss_pred             EEeCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEE
Confidence            0         0000     0          0011222233455 899999999998766554  5567888899999999


Q ss_pred             ccCCCcc
Q 013952          120 ATGSTVL  126 (433)
Q Consensus       120 AtG~~~~  126 (433)
                      |.|....
T Consensus       158 adG~~S~  164 (385)
T TIGR01988       158 ADGANSK  164 (385)
T ss_pred             eCCCCCH
Confidence            9997643

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.39  E-value=1.1e-06  Score=88.74  Aligned_cols=37  Identities=30%  Similarity=0.438  Sum_probs=33.6

Q ss_pred             CCCCcCeEEEECCCHHHHHHHHHHHHcC---CCCCcEEEEcCC
Q 013952            1 MAEKSFKYVILGGGVSAGYAAREFAKQG---VKPGELAIISKE   40 (433)
Q Consensus         1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g---~~~~~V~lie~~   40 (433)
                      |+..++||+|||||.||++||.++++.|   .+   |+|+||.
T Consensus         1 ~~~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~---V~lleK~   40 (577)
T PRK06069          1 MEVLKYDVVIVGSGLAGLRAAVAAAERSGGKLS---VAVVSKT   40 (577)
T ss_pred             CCceecCEEEECccHHHHHHHHHHHHhCCCCCc---EEEEEcc
Confidence            6666789999999999999999999987   55   9999998

>TIGR02028 ChlP geranylgeranyl reductase

Probab=98.38  E-value=2e-06  Score=82.72  Aligned_cols=32  Identities=22%  Similarity=0.558  Sum_probs=30.6

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      +||+||||||||++||+.|++.|++   |+|+|+.
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~G~~---V~llE~~   32 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASAGIQ---TFLLERK   32 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCc---EEEEecC
Confidence            5899999999999999999999998   9999998

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=98.36  E-value=2.1e-06  Score=82.18  Aligned_cols=99  Identities=14%  Similarity=0.279  Sum_probs=74.5

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      ..+++|||||+.|+.+|..|++.|.+   |+++++......+      .        ++.       .....+.+.+++.
T Consensus       141 ~~~vvViGgG~~g~e~A~~L~~~g~~---Vtlv~~~~~~l~~------~--------~~~-------~~~~~l~~~l~~~  196 (377)
T PRK04965        141 AQRVLVVGGGLIGTELAMDLCRAGKA---VTLVDNAASLLAS------L--------MPP-------EVSSRLQHRLTEM  196 (377)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCe---EEEEecCCcccch------h--------CCH-------HHHHHHHHHHHhC
Confidence            36899999999999999999998876   9999987211100      0        000       0012345677889


Q ss_pred             CcEEEeCceEEEEECCCC--EEEeCCCcEEecceEEEccCCCccc
Q 013952           85 GIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLR  127 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~~  127 (433)
                      +++++.++.+..+..+..  .+.+.+++++++|.+|+|+|..|..
T Consensus       197 gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~~  241 (377)
T PRK04965        197 GVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRPNT  241 (377)
T ss_pred             CCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCcch
Confidence            999999999999987554  4667788899999999999998753

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=98.35  E-value=2e-06  Score=84.42  Aligned_cols=99  Identities=16%  Similarity=0.233  Sum_probs=72.3

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      ..+++|||||+.|+.+|..+++.|.+   |+++++......           ....           +....+.+.+++.
T Consensus       170 ~~~vvIIGgG~iG~E~A~~l~~~g~~---Vtli~~~~~ll~-----------~~d~-----------e~~~~l~~~L~~~  224 (458)
T PRK06912        170 PSSLLIVGGGVIGCEFASIYSRLGTK---VTIVEMAPQLLP-----------GEDE-----------DIAHILREKLEND  224 (458)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCe---EEEEecCCCcCc-----------cccH-----------HHHHHHHHHHHHC
Confidence            35899999999999999999998876   999988711110           0000           0012345667788


Q ss_pred             CcEEEeCceEEEEECCCCEEEeC-CC--cEEecceEEEccCCCcccc
Q 013952           85 GIELILSTEIVRADIASKTLLSA-TG--LIFKYQILVIATGSTVLRL  128 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~~v~~~-~~--~~~~~d~lvlAtG~~~~~~  128 (433)
                      |++++.++.+..++.++..+.+. ++  .++.+|.+++|+|..|...
T Consensus       225 GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~~  271 (458)
T PRK06912        225 GVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPRVQ  271 (458)
T ss_pred             CCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCccCCC
Confidence            99999999999998766555442 33  3689999999999988653

>PRK10262 thioredoxin reductase; Provisional

Probab=98.32  E-value=2e-05  Score=73.78  Aligned_cols=100  Identities=13%  Similarity=0.120  Sum_probs=71.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC---cc--------CC----CCCCHHHHHHHHHHHHhcCcEEEcCC
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP---WC--------MP----RLFTADIAAFYEGYYANKGIKIIKGT  225 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~---~~--------~~----~~~~~~~~~~l~~~l~~~GV~v~~~~  225 (433)
                      +.++++|||+|+.|+.+|..+.+.|.++++++...   .+        ++    ....+.+.+.+.+.....+++++.+ 
T Consensus         5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   83 (321)
T PRK10262          5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD-   83 (321)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEee-
Confidence            46799999999999999999999999998885321   10        01    1123456777788888888888775 


Q ss_pred             eEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccCh
Q 013952          226 VAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI  264 (433)
Q Consensus       226 ~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~  264 (433)
                      .+..++.  .+....+...++ .+.+|.||+|+|.+|+.
T Consensus        84 ~v~~v~~--~~~~~~v~~~~~-~~~~d~vilAtG~~~~~  119 (321)
T PRK10262         84 HINKVDL--QNRPFRLTGDSG-EYTCDALIIATGASARY  119 (321)
T ss_pred             EEEEEEe--cCCeEEEEecCC-EEEECEEEECCCCCCCC
Confidence            5667765  233334544433 78999999999998864

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=98.31  E-value=4.1e-05  Score=73.75  Aligned_cols=97  Identities=22%  Similarity=0.248  Sum_probs=73.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC------------------CCCC----------------------
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM------------------PRLF----------------------  202 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~------------------~~~~----------------------  202 (433)
                      -.|+|||+|+.|.-+|..|++.|.+|.++++.+.+.                  +...                      
T Consensus         4 ~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~~~   83 (396)
T COG0644           4 YDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVAIE   83 (396)
T ss_pred             eeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceEEe
Confidence            368999999999999999999999999998864321                  1000                      


Q ss_pred             ----------CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013952          203 ----------TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG  260 (433)
Q Consensus       203 ----------~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~  260 (433)
                                -..+.+++.+..++.|++++.++++..+..++++.+..+ ..++.++.++.||.|.|.
T Consensus        84 ~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~a~~vI~AdG~  150 (396)
T COG0644          84 VPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGV-RAGDDEVRAKVVIDADGV  150 (396)
T ss_pred             cCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEE-EcCCEEEEcCEEEECCCc
Confidence                      013455677788899999999999999988555544333 344468999999999985

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=98.31  E-value=2.9e-05  Score=69.83  Aligned_cols=57  Identities=19%  Similarity=0.160  Sum_probs=42.2

Q ss_pred             CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013952          203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR  261 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~  261 (433)
                      ...-...+++.-..-+-++.+++.|..+...++|  ..+...+|++-.+|.+|+|+-..
T Consensus       216 ~ggS~~yvq~laa~~~~~i~t~~~V~~l~rlPdG--v~l~~~~G~s~rFD~vViAth~d  272 (447)
T COG2907         216 AGGSRAYVQRLAADIRGRIETRTPVCRLRRLPDG--VVLVNADGESRRFDAVVIATHPD  272 (447)
T ss_pred             ccchHHHHHHHhccccceeecCCceeeeeeCCCc--eEEecCCCCccccceeeeecChH
Confidence            3444555666556656568999999999887788  44666778888999999988743

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=98.31  E-value=7.9e-06  Score=76.54  Aligned_cols=95  Identities=25%  Similarity=0.300  Sum_probs=70.6

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEcc-CCccCCC------------------------------------------
Q 013952          164 KAVVVGGGYIGLELSAALKINNIDVSMVYP-EPWCMPR------------------------------------------  200 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~-~~~~~~~------------------------------------------  200 (433)
                      .|+|||+|..|+|+|..+++.|.+|.++.. .+.+...                                          
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s   80 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS   80 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence            379999999999999999999999999932 2221100                                          


Q ss_pred             ----------CCC-HHHHHHHHHHHHh-cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013952          201 ----------LFT-ADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG  260 (433)
Q Consensus       201 ----------~~~-~~~~~~l~~~l~~-~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~  260 (433)
                                ..| ..+.+.+++.+++ .+++++ ..+|+++.. +++++.+|.+.+|+++.+|.||+|||.
T Consensus        81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~-e~~~v~GV~~~~g~~~~a~~vVlaTGt  150 (392)
T PF01134_consen   81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIV-ENGKVKGVVTKDGEEIEADAVVLATGT  150 (392)
T ss_dssp             S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEE-CTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred             CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEe-cCCeEEEEEeCCCCEEecCEEEEeccc
Confidence                      001 1345667777776 688887 568999987 678999999999999999999999998

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=98.31  E-value=2.6e-06  Score=81.82  Aligned_cols=33  Identities=21%  Similarity=0.368  Sum_probs=31.4

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      .+||+|||||++|+++|..|++.|++   |+|+|+.
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~---v~viE~~   34 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHKAGID---NVILERQ   34 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHHCCCC---EEEEECC
Confidence            37999999999999999999999998   9999998

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=98.31  E-value=1.1e-05  Score=74.14  Aligned_cols=59  Identities=20%  Similarity=0.345  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCC---------------CcEEECCEEEEcccCcc
Q 013952          204 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD---------------GRTLEADIVVVGVGGRP  262 (433)
Q Consensus       204 ~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~---------------g~~i~~d~vi~a~G~~p  262 (433)
                      ..+..++-+..++.||+++++....++..+++|.+.++-++|               |-++.+..-|+|-|-+.
T Consensus       183 ~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G  256 (621)
T KOG2415|consen  183 GQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHG  256 (621)
T ss_pred             HHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecceeEEEeccccc
Confidence            456677777889999999999999999888899888888754               23688888888888543

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.30  E-value=2.8e-06  Score=85.41  Aligned_cols=37  Identities=38%  Similarity=0.636  Sum_probs=32.8

Q ss_pred             CCCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      |-...+||||||+|.||++||.++++.|.+   |+|+||.
T Consensus         1 ~~~~~~DVvVVG~G~AGl~AAl~Aae~G~~---V~lveK~   37 (566)
T PRK06452          1 MEKIEYDAVVIGGGLAGLMSAHEIASAGFK---VAVISKV   37 (566)
T ss_pred             CCcccCcEEEECccHHHHHHHHHHHHCCCc---EEEEEcc
Confidence            333468999999999999999999999887   9999998

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=98.30  E-value=8.4e-06  Score=80.39  Aligned_cols=51  Identities=22%  Similarity=0.332  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEccc
Q 013952          205 DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVG  259 (433)
Q Consensus       205 ~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G  259 (433)
                      .+.+.+.+.+++  ++++++++|++|+..+++  ..|.+.+|+.+.+|.||+++.
T Consensus       227 ~l~~~l~~~l~~--~~i~~~~~V~~I~~~~~~--~~v~~~~g~~~~ad~VI~a~p  277 (463)
T PRK12416        227 TIIDRLEEVLTE--TVVKKGAVTTAVSKQGDR--YEISFANHESIQADYVVLAAP  277 (463)
T ss_pred             HHHHHHHHhccc--ccEEcCCEEEEEEEcCCE--EEEEECCCCEEEeCEEEECCC
Confidence            455666665544  689999999999874333  567788888899999999987

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=98.30  E-value=2.4e-05  Score=77.07  Aligned_cols=59  Identities=15%  Similarity=0.143  Sum_probs=45.0

Q ss_pred             CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecC--CC--cEEEEEeCCC---cEEECCEEEEcccCc
Q 013952          203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNA--DG--EVKEVKLKDG---RTLEADIVVVGVGGR  261 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~--~g--~~~~v~~~~g---~~i~~d~vi~a~G~~  261 (433)
                      ..-+.+.+.+.+++.|++++++++|++|..++  ++  +++++.+.+|   +++.+|.||+|++..
T Consensus       218 ~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~  283 (474)
T TIGR02732       218 DKYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVP  283 (474)
T ss_pred             chhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChH
Confidence            44456778888899999999999999998633  23  2566667544   569999999999953

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=98.30  E-value=2.6e-06  Score=73.77  Aligned_cols=32  Identities=22%  Similarity=0.351  Sum_probs=30.5

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      .+|+|||+|++|++||..|++.|++   |+|+||+
T Consensus         2 ~siaIVGaGiAGl~aA~~L~~aG~~---vtV~eKg   33 (331)
T COG3380           2 PSIAIVGAGIAGLAAAYALREAGRE---VTVFEKG   33 (331)
T ss_pred             CcEEEEccchHHHHHHHHHHhcCcE---EEEEEcC
Confidence            4799999999999999999999998   9999999

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=98.30  E-value=3.7e-05  Score=78.01  Aligned_cols=58  Identities=21%  Similarity=0.300  Sum_probs=46.4

Q ss_pred             CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEECCEEEEcccC
Q 013952          203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGG  260 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~---~~g~--~i~~d~vi~a~G~  260 (433)
                      ...+...+.+.+++.||+++.++.+.++..+++|++.++..   .+|+  .+.++.||+|||-
T Consensus       165 G~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG  227 (617)
T PTZ00139        165 GHAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGG  227 (617)
T ss_pred             HHHHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCC
Confidence            45777888888888999999999999987545778887764   3553  5789999999983

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=98.29  E-value=2.9e-05  Score=65.34  Aligned_cols=172  Identities=17%  Similarity=0.157  Sum_probs=106.9

Q ss_pred             HhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCC------C-----------------------------
Q 013952          158 KAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL------F-----------------------------  202 (433)
Q Consensus       158 ~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~------~-----------------------------  202 (433)
                      .++....|+|+|+|++|+-+|.+|++.|.+|.++++.-.+....      |                             
T Consensus        26 ~~~~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v  105 (262)
T COG1635          26 LDYLESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYV  105 (262)
T ss_pred             HhhhhccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEE
Confidence            33356789999999999999999999999999998864332111      1                             


Q ss_pred             --CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC-----------CCcEEECCEEEEcccCccChh-hhh
Q 013952          203 --TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK-----------DGRTLEADIVVVGVGGRPLIS-LFK  268 (433)
Q Consensus       203 --~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~-----------~g~~i~~d~vi~a~G~~p~~~-~~~  268 (433)
                        +.++...+....-+.|.+++....|+.+...++.++.++..+           |--.++++.||-|||.....- ++.
T Consensus       106 ~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~~~  185 (262)
T COG1635         106 ADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSFLA  185 (262)
T ss_pred             ecHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchHHHHHHH
Confidence              113344444455667899999999999876334367776653           223689999999999765442 221


Q ss_pred             -c----cccc-CCCcEEeC--CC-----CCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccC
Q 013952          269 -G----QVAE-NKGGIETD--DF-----FKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE  332 (433)
Q Consensus       269 -~----~~~~-~~g~i~vd--~~-----~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~  332 (433)
                       .    .... ..+....+  +.     -+--.||+|++|=.+..-.   |.++--+....=...|+.||+.|+.++
T Consensus       186 kr~~~l~~~~~Ge~~mw~e~~E~lvV~~T~eV~pgL~vaGMa~~av~---G~pRMGPiFGgMllSGkkaAe~i~e~L  259 (262)
T COG1635         186 KRIPELGIEVPGEKSMWAERGEDLVVENTGEVYPGLYVAGMAVNAVH---GLPRMGPIFGGMLLSGKKAAEEILEKL  259 (262)
T ss_pred             HhccccccccCCCcchhhhHHHHHHHhccccccCCeEeehhhHHhhc---CCcccCchhhhhhhchHHHHHHHHHHh
Confidence             1    1111 11111111  11     1225899999997664321   222211333333467888888887654

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.29  E-value=3.3e-06  Score=83.32  Aligned_cols=99  Identities=15%  Similarity=0.232  Sum_probs=71.2

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      ..+++|||||++|+.+|..|++.|.+   |+++++.....                  +.+.    ......+.+.+++.
T Consensus       180 ~~~vvIIGgG~~G~E~A~~l~~~g~~---Vtli~~~~~il------------------~~~~----~~~~~~l~~~l~~~  234 (472)
T PRK05976        180 PKSLVIVGGGVIGLEWASMLADFGVE---VTVVEAADRIL------------------PTED----AELSKEVARLLKKL  234 (472)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCe---EEEEEecCccC------------------CcCC----HHHHHHHHHHHHhc
Confidence            36899999999999999999998876   99999871110                  0000    00012345667888


Q ss_pred             CcEEEeCceEEEEEC--CCCE-E-EeCCC--cEEecceEEEccCCCcccc
Q 013952           85 GIELILSTEIVRADI--ASKT-L-LSATG--LIFKYQILVIATGSTVLRL  128 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~--~~~~-v-~~~~~--~~~~~d~lvlAtG~~~~~~  128 (433)
                      |++++.++.+..++.  +++. + ...++  +++++|.+++|+|.+|...
T Consensus       235 gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~  284 (472)
T PRK05976        235 GVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTE  284 (472)
T ss_pred             CCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCC
Confidence            999999999999874  3333 2 23455  3699999999999998653

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=98.28  E-value=4.2e-06  Score=80.58  Aligned_cols=33  Identities=12%  Similarity=0.287  Sum_probs=31.4

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ++||+||||||+|+++|..|++.|++   |+|+|+.
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~~G~~---v~v~E~~   34 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHLAGID---SVVLERR   34 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHhcCCC---EEEEEcC
Confidence            47999999999999999999999998   9999998

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.28  E-value=3e-06  Score=83.53  Aligned_cols=98  Identities=15%  Similarity=0.205  Sum_probs=72.7

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhCC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKG   85 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (433)
                      .+++|||||+.|+.+|..|++.|.+   |+++++......  ..                .    ......+.+.+++.+
T Consensus       173 ~~vvVvGgG~~g~E~A~~l~~~g~~---Vtli~~~~~~l~--~~----------------~----~~~~~~l~~~l~~~g  227 (462)
T PRK06416        173 KSLVVIGGGYIGVEFASAYASLGAE---VTIVEALPRILP--GE----------------D----KEISKLAERALKKRG  227 (462)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCe---EEEEEcCCCcCC--cC----------------C----HHHHHHHHHHHHHcC
Confidence            5899999999999999999998876   999998711110  00                0    000134556778899


Q ss_pred             cEEEeCceEEEEECCCCE--EEeCCC---cEEecceEEEccCCCcccc
Q 013952           86 IELILSTEIVRADIASKT--LLSATG---LIFKYQILVIATGSTVLRL  128 (433)
Q Consensus        86 v~~~~~~~v~~i~~~~~~--v~~~~~---~~~~~d~lvlAtG~~~~~~  128 (433)
                      ++++.++.+..++.+++.  +.+.++   +++++|.+|+|+|.+|...
T Consensus       228 V~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~  275 (462)
T PRK06416        228 IKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNTE  275 (462)
T ss_pred             CEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCCC
Confidence            999999999999876544  344455   6799999999999988654

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=98.27  E-value=5.6e-06  Score=80.85  Aligned_cols=44  Identities=14%  Similarity=0.233  Sum_probs=34.7

Q ss_pred             CcEEEeCceEEEEECC---------CCEEEeCCCcEEecceEEEccCCCcccc
Q 013952           85 GIELILSTEIVRADIA---------SKTLLSATGLIFKYQILVIATGSTVLRL  128 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~---------~~~v~~~~~~~~~~d~lvlAtG~~~~~~  128 (433)
                      +++++.++++.+++..         .-+|.+.+++++++|.||-|.|......
T Consensus       134 ~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~vR  186 (437)
T TIGR01989       134 NVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSNVR  186 (437)
T ss_pred             CeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCChhH
Confidence            4899999999988631         2356778889999999999999865443

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=98.27  E-value=7.3e-06  Score=79.66  Aligned_cols=102  Identities=17%  Similarity=0.218  Sum_probs=73.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCC----------CHHHHHHHHHHHHhcCcEEEcCCeEEEE
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLF----------TADIAAFYEGYYANKGIKIIKGTVAVGF  230 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~----------~~~~~~~l~~~l~~~GV~v~~~~~v~~i  230 (433)
                      +.++++|||+|+.|+.+|..|...+.+|+++++.+.+.-...          ..++...+.+.++..+++++.+ +|++|
T Consensus         9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~-~V~~I   87 (424)
T PTZ00318          9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLRA-VVYDV   87 (424)
T ss_pred             CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCeEEEEE-EEEEE
Confidence            457999999999999999999776789999998776432111          1233444566677788988754 78999


Q ss_pred             EecCCCcEEEEEe--------CCCcEEECCEEEEcccCccChh
Q 013952          231 TTNADGEVKEVKL--------KDGRTLEADIVVVGVGGRPLIS  265 (433)
Q Consensus       231 ~~~~~g~~~~v~~--------~~g~~i~~d~vi~a~G~~p~~~  265 (433)
                      +.  +.+...+..        .+|.++++|.+|+|+|.+|+..
T Consensus        88 d~--~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~  128 (424)
T PTZ00318         88 DF--EEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTF  128 (424)
T ss_pred             Ec--CCCEEEEecccccccccCCceEecCCEEEECCCcccCCC
Confidence            86  443333311        4566899999999999987643

>PRK06116 glutathione reductase; Validated

Probab=98.27  E-value=3.5e-06  Score=82.66  Aligned_cols=99  Identities=19%  Similarity=0.161  Sum_probs=74.2

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      ..+++|||+|+.|+..|..|++.|.+   |+++++...+..  .     +               .......+.+.+++.
T Consensus       167 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~~~l~--~-----~---------------~~~~~~~l~~~L~~~  221 (450)
T PRK06116        167 PKRVAVVGAGYIAVEFAGVLNGLGSE---THLFVRGDAPLR--G-----F---------------DPDIRETLVEEMEKK  221 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEecCCCCcc--c-----c---------------CHHHHHHHHHHHHHC
Confidence            36899999999999999999998876   999988711100  0     0               000113455677889


Q ss_pred             CcEEEeCceEEEEECCC-C--EEEeCCCcEEecceEEEccCCCcccc
Q 013952           85 GIELILSTEIVRADIAS-K--TLLSATGLIFKYQILVIATGSTVLRL  128 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~-~--~v~~~~~~~~~~d~lvlAtG~~~~~~  128 (433)
                      |++++.++.+.+++.++ .  .+.+.+++++.+|.+++|+|..|...
T Consensus       222 GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~  268 (450)
T PRK06116        222 GIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNTD  268 (450)
T ss_pred             CcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcCCC
Confidence            99999999999997543 2  45667788899999999999988654

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.27  E-value=3.3e-06  Score=85.39  Aligned_cols=33  Identities=30%  Similarity=0.426  Sum_probs=30.8

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      .+||||||||.||++||.++++.|.+   |+|+||.
T Consensus        12 ~~DVvVIG~G~AGl~AAl~Aa~~G~~---V~lveK~   44 (598)
T PRK09078         12 KYDVVVVGAGGAGLRATLGMAEAGLK---TACITKV   44 (598)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCc---EEEEEcc
Confidence            47999999999999999999999887   9999998

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=98.27  E-value=3.7e-06  Score=82.03  Aligned_cols=95  Identities=13%  Similarity=0.161  Sum_probs=72.9

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhCC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKG   85 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (433)
                      .+++|||||+.|+-.|..|++.|.+   |+++++.....  +.     +.               .+......+.+++.|
T Consensus       149 ~~vvViGgG~ig~E~A~~l~~~g~~---Vtli~~~~~l~--~~-----~d---------------~~~~~~l~~~l~~~g  203 (438)
T PRK13512        149 DKALVVGAGYISLEVLENLYERGLH---PTLIHRSDKIN--KL-----MD---------------ADMNQPILDELDKRE  203 (438)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCc---EEEEecccccc--hh-----cC---------------HHHHHHHHHHHHhcC
Confidence            5899999999999999999998876   99999871100  00     00               000134566678899


Q ss_pred             cEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccc
Q 013952           86 IELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLR  127 (433)
Q Consensus        86 v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~  127 (433)
                      ++++.++.+..++.  ..+++.+++++.+|.+++|+|.+|..
T Consensus       204 I~i~~~~~v~~i~~--~~v~~~~g~~~~~D~vl~a~G~~pn~  243 (438)
T PRK13512        204 IPYRLNEEIDAING--NEVTFKSGKVEHYDMIIEGVGTHPNS  243 (438)
T ss_pred             CEEEECCeEEEEeC--CEEEECCCCEEEeCEEEECcCCCcCh
Confidence            99999999999863  46777788889999999999998864

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.27  E-value=2.9e-06  Score=86.13  Aligned_cols=33  Identities=30%  Similarity=0.532  Sum_probs=31.3

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      .+||||||+|.||++||..+++.|.+   |+||||.
T Consensus         8 ~~DVvVIG~G~AGl~AAl~Aae~G~~---V~lieK~   40 (626)
T PRK07803          8 SYDVVVIGAGGAGLRAAIEARERGLR---VAVVCKS   40 (626)
T ss_pred             eecEEEECcCHHHHHHHHHHHHCCCC---EEEEecc
Confidence            57999999999999999999999987   9999998

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=98.27  E-value=5.3e-06  Score=79.11  Aligned_cols=97  Identities=19%  Similarity=0.302  Sum_probs=73.1

Q ss_pred             cEEEECCCHHHHHHHHHHHhC---CCeEEEEccCCccCCC-CC---------CHHHHHHHHHHHHhcCcEEEcCCeEEEE
Q 013952          164 KAVVVGGGYIGLELSAALKIN---NIDVSMVYPEPWCMPR-LF---------TADIAAFYEGYYANKGIKIIKGTVAVGF  230 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~---g~~V~li~~~~~~~~~-~~---------~~~~~~~l~~~l~~~GV~v~~~~~v~~i  230 (433)
                      +++|||+|+.|+.+|..+.+.   +.+|+++++.+...-. .+         ..++...+.+.+++.||+++.+ +|.++
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~i   79 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIA-EATGI   79 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEEEE-EEEEE
Confidence            589999999999999998643   5799999887653211 01         1234445567778889999876 78888


Q ss_pred             EecCCCcEEEEEeCCCcEEECCEEEEcccCccChh
Q 013952          231 TTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS  265 (433)
Q Consensus       231 ~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~  265 (433)
                      +.  +++  .|.+.+|+++++|.+|+|||.+|+..
T Consensus        80 d~--~~~--~V~~~~g~~~~yD~LviAtG~~~~~~  110 (364)
T TIGR03169        80 DP--DRR--KVLLANRPPLSYDVLSLDVGSTTPLS  110 (364)
T ss_pred             ec--ccC--EEEECCCCcccccEEEEccCCCCCCC
Confidence            76  333  57788888899999999999888654

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=98.26  E-value=3.1e-05  Score=76.19  Aligned_cols=59  Identities=29%  Similarity=0.467  Sum_probs=45.0

Q ss_pred             CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEE---eCCC--cEEECCEEEEcccCcc
Q 013952          203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVK---LKDG--RTLEADIVVVGVGGRP  262 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~---~~~g--~~i~~d~vi~a~G~~p  262 (433)
                      +..+...+.+.+++.|++++++++|.++...+++.. .+.   +.+|  .++.+|.||+|+|...
T Consensus       177 p~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v-~v~~~~~~~g~~~~i~A~~VV~AAG~~s  240 (483)
T TIGR01320       177 FGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSW-TVTVKNTRTGGKRTLNTRFVFVGAGGGA  240 (483)
T ss_pred             HHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeE-EEEEeeccCCceEEEECCEEEECCCcch
Confidence            578888999999999999999999999987333322 333   2334  3689999999999654

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=98.26  E-value=1.5e-05  Score=80.99  Aligned_cols=61  Identities=15%  Similarity=0.186  Sum_probs=48.1

Q ss_pred             CCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecC-CCcEEEEEe---CCCc--EEECCEEEEcccCcc
Q 013952          202 FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNA-DGEVKEVKL---KDGR--TLEADIVVVGVGGRP  262 (433)
Q Consensus       202 ~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~-~g~~~~v~~---~~g~--~i~~d~vi~a~G~~p  262 (433)
                      .+..+...+.+.+++.|++++.+++|.++..++ ++++..|..   .+++  ++.+|.||+|+|...
T Consensus       230 dp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws  296 (627)
T PLN02464        230 NDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFC  296 (627)
T ss_pred             cHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhH
Confidence            367888889999999999999999999998743 466666654   2343  589999999999654

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.26  E-value=3.7e-06  Score=80.42  Aligned_cols=32  Identities=38%  Similarity=0.540  Sum_probs=30.3

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      +||+|||||++|+++|..|++.|++   |+|+|+.
T Consensus         2 ~dV~IvGgG~~Gl~~A~~L~~~G~~---v~l~E~~   33 (374)
T PRK06617          2 SNTVILGCGLSGMLTALSFAQKGIK---TTIFESK   33 (374)
T ss_pred             ccEEEECCCHHHHHHHHHHHcCCCe---EEEecCC
Confidence            5999999999999999999999998   9999976

>PRK14694 putative mercuric reductase; Provisional

Probab=98.25  E-value=5e-06  Score=81.95  Aligned_cols=97  Identities=20%  Similarity=0.336  Sum_probs=71.9

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHh
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   83 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (433)
                      ..+++|||+|+.|+..|..|++.|.+   |+++++. ..+..             ..           .....+.+.+++
T Consensus       178 ~~~vvViG~G~~G~E~A~~l~~~g~~---Vtlv~~~~~l~~~-------------~~-----------~~~~~l~~~l~~  230 (468)
T PRK14694        178 PERLLVIGASVVALELAQAFARLGSR---VTVLARSRVLSQE-------------DP-----------AVGEAIEAAFRR  230 (468)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEECCCCCCCC-------------CH-----------HHHHHHHHHHHh
Confidence            36899999999999999999999876   9999765 11100             00           002345667788


Q ss_pred             CCcEEEeCceEEEEECCCCEEEe-CCCcEEecceEEEccCCCcccc
Q 013952           84 KGIELILSTEIVRADIASKTLLS-ATGLIFKYQILVIATGSTVLRL  128 (433)
Q Consensus        84 ~~v~~~~~~~v~~i~~~~~~v~~-~~~~~~~~d~lvlAtG~~~~~~  128 (433)
                      .|++++.++.+..++.++..+.+ .++.++.+|.+++|+|..|+..
T Consensus       231 ~GI~v~~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn~~  276 (468)
T PRK14694        231 EGIEVLKQTQASEVDYNGREFILETNAGTLRAEQLLVATGRTPNTE  276 (468)
T ss_pred             CCCEEEeCCEEEEEEEcCCEEEEEECCCEEEeCEEEEccCCCCCcC
Confidence            99999999999999876654332 2344799999999999988754

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.25  E-value=4e-06  Score=82.08  Aligned_cols=99  Identities=21%  Similarity=0.248  Sum_probs=73.1

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      ..+++|||+|+.|+.+|..+++.|.+   |+++++......                  .+.    .+....+.+.+++.
T Consensus       166 ~~~vvVIGgG~~g~E~A~~l~~~G~~---Vtli~~~~~~l~------------------~~d----~~~~~~l~~~l~~~  220 (446)
T TIGR01424       166 PKSILILGGGYIAVEFAGIWRGLGVQ---VTLIYRGELILR------------------GFD----DDMRALLARNMEGR  220 (446)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCe---EEEEEeCCCCCc------------------ccC----HHHHHHHHHHHHHC
Confidence            35799999999999999999998876   999998711110                  000    00012345667789


Q ss_pred             CcEEEeCceEEEEECCC--CEEEeCCCcEEecceEEEccCCCcccc
Q 013952           85 GIELILSTEIVRADIAS--KTLLSATGLIFKYQILVIATGSTVLRL  128 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~--~~v~~~~~~~~~~d~lvlAtG~~~~~~  128 (433)
                      |++++.++.+..++..+  ..+.+.+++++++|.+++|+|..|...
T Consensus       221 gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn~~  266 (446)
T TIGR01424       221 GIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSPNTK  266 (446)
T ss_pred             CCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCcCCC
Confidence            99999999999987533  345666778899999999999987643

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=98.25  E-value=4.1e-06  Score=87.37  Aligned_cols=97  Identities=27%  Similarity=0.445  Sum_probs=73.8

Q ss_pred             EEEECCCHHHHHHHHHHHhCC---CeEEEEccCCccC------CCCCC-----HHHHHHHHHHHHhcCcEEEcCCeEEEE
Q 013952          165 AVVVGGGYIGLELSAALKINN---IDVSMVYPEPWCM------PRLFT-----ADIAAFYEGYYANKGIKIIKGTVAVGF  230 (433)
Q Consensus       165 v~ViG~G~~g~e~a~~l~~~g---~~V~li~~~~~~~------~~~~~-----~~~~~~l~~~l~~~GV~v~~~~~v~~i  230 (433)
                      ++|||+|+.|+.+|..|.+.+   .+|+++++.+.+.      +.++.     +++.....+.+++.||+++++++|.+|
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~I   80 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQI   80 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEE
Confidence            589999999999999987754   5899998876532      11111     122223356678899999999999999


Q ss_pred             EecCCCcEEEEEeCCCcEEECCEEEEcccCccChh
Q 013952          231 TTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS  265 (433)
Q Consensus       231 ~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~  265 (433)
                      +.  +.  ..|.+.+|+++.+|.+|+|||.+|+..
T Consensus        81 d~--~~--k~V~~~~g~~~~yD~LVlATGs~p~~p  111 (785)
T TIGR02374        81 DT--DQ--KQVITDAGRTLSYDKLILATGSYPFIL  111 (785)
T ss_pred             EC--CC--CEEEECCCcEeeCCEEEECCCCCcCCC
Confidence            86  33  357788888999999999999988654

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=98.24  E-value=7.1e-05  Score=73.29  Aligned_cols=60  Identities=20%  Similarity=0.266  Sum_probs=43.3

Q ss_pred             CHHHHHHHHHHHH-hcCcEEEcCCeEEEEEecCCCcEEEEE---eCCCc--EEECCEEEEcccCccC
Q 013952          203 TADIAAFYEGYYA-NKGIKIIKGTVAVGFTTNADGEVKEVK---LKDGR--TLEADIVVVGVGGRPL  263 (433)
Q Consensus       203 ~~~~~~~l~~~l~-~~GV~v~~~~~v~~i~~~~~g~~~~v~---~~~g~--~i~~d~vi~a~G~~p~  263 (433)
                      ...+.+.+.+.+. ..|++++++++|..+...+++. +.+.   +.+++  ++.+|.||+|.|....
T Consensus       183 ~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~-w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~  248 (497)
T PRK13339        183 FGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGG-WEVTVKDRNTGEKREQVADYVFIGAGGGAI  248 (497)
T ss_pred             HHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCC-EEEEEEecCCCceEEEEcCEEEECCCcchH
Confidence            4567777877775 4599999999999998742333 3343   34442  6899999999997653

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=98.23  E-value=8.6e-06  Score=85.08  Aligned_cols=100  Identities=25%  Similarity=0.504  Sum_probs=75.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhC----CCeEEEEccCCccC------CCCC----CHHHHHHHHHHHHhcCcEEEcCCeE
Q 013952          162 NGKAVVVGGGYIGLELSAALKIN----NIDVSMVYPEPWCM------PRLF----TADIAAFYEGYYANKGIKIIKGTVA  227 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~----g~~V~li~~~~~~~------~~~~----~~~~~~~l~~~l~~~GV~v~~~~~v  227 (433)
                      .++++|||+|+.|+.+|..|.+.    +.+|+++.+.+.+.      +.++    ..++.....+.+++.||+++.++.|
T Consensus         3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~g~~V   82 (847)
T PRK14989          3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERA   82 (847)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEcCCEE
Confidence            35899999999999999999764    46899998776532      1111    1233333355678899999999999


Q ss_pred             EEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChh
Q 013952          228 VGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS  265 (433)
Q Consensus       228 ~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~  265 (433)
                      .+++.  +.  ..|.+.+|+++.+|.+|+|||.+|...
T Consensus        83 ~~Id~--~~--~~V~~~~G~~i~yD~LVIATGs~p~~p  116 (847)
T PRK14989         83 ITINR--QE--KVIHSSAGRTVFYDKLIMATGSYPWIP  116 (847)
T ss_pred             EEEeC--CC--cEEEECCCcEEECCEEEECCCCCcCCC
Confidence            99976  33  356778888999999999999988654

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.23  E-value=5e-06  Score=81.92  Aligned_cols=99  Identities=20%  Similarity=0.206  Sum_probs=73.9

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      ..+++|||||+.|+..|..+++.|.+   |+++++......                  .+    ..+....+.+.+++.
T Consensus       175 ~~~v~IiGgG~~g~E~A~~l~~~g~~---Vtli~~~~~~l~------------------~~----d~~~~~~l~~~l~~~  229 (461)
T PRK05249        175 PRSLIIYGAGVIGCEYASIFAALGVK---VTLINTRDRLLS------------------FL----DDEISDALSYHLRDS  229 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEecCCCcCC------------------cC----CHHHHHHHHHHHHHc
Confidence            36899999999999999999999877   999998711100                  00    000113455667788


Q ss_pred             CcEEEeCceEEEEECCCC--EEEeCCCcEEecceEEEccCCCcccc
Q 013952           85 GIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRL  128 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~~~  128 (433)
                      |++++.++.+..+...+.  .+.+.+++++++|.+++|+|.+|...
T Consensus       230 gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~  275 (461)
T PRK05249        230 GVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNTD  275 (461)
T ss_pred             CCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCcccc
Confidence            999999999999875443  34556778899999999999988653

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=98.23  E-value=4.6e-06  Score=84.24  Aligned_cols=56  Identities=20%  Similarity=0.131  Sum_probs=40.1

Q ss_pred             CCCcEEeCCCCC----CCCCCeEEcCccccccccccCcccc-cccHHHHHHHHHHHHHHHhcc
Q 013952          274 NKGGIETDDFFK----TSADDVYAVGDVATFPMKLYREMRR-VEHVDHARKSAEQAVKTIMAT  331 (433)
Q Consensus       274 ~~g~i~vd~~~~----t~~~~vfa~Gd~~~~~~~~~~~~~~-~~~~~~A~~~g~~aa~~i~~~  331 (433)
                      ..|+|.||..+|    |++||+||+|+|++..  .+|..+. -.+...|.-.|++|++++...
T Consensus       341 t~GGi~id~~~~v~~~t~I~GLyAaGe~a~~g--~hGa~rl~g~sl~~a~v~G~~Ag~~aa~~  401 (566)
T TIGR01812       341 SMGGIPTDYTGRVICETIVKGLFAAGECACVS--VHGANRLGGNSLLELVVFGRIAGEAAAEY  401 (566)
T ss_pred             cCCCeEECcCcccccCcccCCeeecccccccC--cCcccccchhhHHHHHHHHHHHHHHHHHH
Confidence            569999999999    9999999999997521  1222111 134566777888888887653

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.23  E-value=7.6e-06  Score=83.22  Aligned_cols=33  Identities=18%  Similarity=0.469  Sum_probs=30.7

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      .+||+|||||.|||+||.++++.|.+   |+||++.
T Consensus        35 ~~DVlVVG~G~AGl~AAi~Aae~G~~---VilieK~   67 (640)
T PRK07573         35 KFDVIVVGTGLAGASAAATLGELGYN---VKVFCYQ   67 (640)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCc---EEEEecC
Confidence            47999999999999999999999987   9999975

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=98.22  E-value=7.2e-06  Score=79.05  Aligned_cols=100  Identities=19%  Similarity=0.267  Sum_probs=75.3

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      ..+++|||||+.|+-.|..+++.|.+   |+|+++.....                  |.+.    ++..+.+...+++.
T Consensus       173 P~~lvIiGgG~IGlE~a~~~~~LG~~---VTiie~~~~iL------------------p~~D----~ei~~~~~~~l~~~  227 (454)
T COG1249         173 PKSLVIVGGGYIGLEFASVFAALGSK---VTVVERGDRIL------------------PGED----PEISKELTKQLEKG  227 (454)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCc---EEEEecCCCCC------------------CcCC----HHHHHHHHHHHHhC
Confidence            45799999999999999999999987   99999991110                  1000    01123456667777


Q ss_pred             CcEEEeCceEEEEECCCC--EEEeCCCc--EEecceEEEccCCCccccC
Q 013952           85 GIELILSTEIVRADIASK--TLLSATGL--IFKYQILVIATGSTVLRLT  129 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~--~v~~~~~~--~~~~d~lvlAtG~~~~~~~  129 (433)
                      ++.++.++.+..+...+.  .+.++++.  ++++|++++|+|-+|+...
T Consensus       228 gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~  276 (454)
T COG1249         228 GVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDG  276 (454)
T ss_pred             CeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccCCCC
Confidence            899999999998876654  45666665  6899999999999987653

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.22  E-value=9.1e-05  Score=74.74  Aligned_cols=66  Identities=18%  Similarity=0.205  Sum_probs=49.2

Q ss_pred             CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCC-Cc--EEECC-EEEEccc-CccChhhhh
Q 013952          203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD-GR--TLEAD-IVVVGVG-GRPLISLFK  268 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~-g~--~i~~d-~vi~a~G-~~p~~~~~~  268 (433)
                      ...+...+.+.+++.|++++++++++++..+++|++.+|.... ++  .+.++ .||+|+| +.-|.++++
T Consensus       212 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~~N~em~~  282 (584)
T PRK12835        212 GQSLVARLRLALKDAGVPLWLDSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGGFDHDMDWRK  282 (584)
T ss_pred             cHHHHHHHHHHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCcccCCHHHHH
Confidence            3455666777888999999999999999886678888876643 32  47787 5999888 555666553

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.22  E-value=2.3e-06  Score=74.08  Aligned_cols=103  Identities=21%  Similarity=0.335  Sum_probs=72.1

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC--CCCCH-----------HHH--H--HHHHHHHhcCcEEEcCCe
Q 013952          164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP--RLFTA-----------DIA--A--FYEGYYANKGIKIIKGTV  226 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~--~~~~~-----------~~~--~--~l~~~l~~~GV~v~~~~~  226 (433)
                      +|+|||+|+.|+.+|..|.+.+.++++++..+....  .....           ...  +  .+.+.+.+.+++++.+++
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   80 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLNAK   80 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHHHT
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeeccc
Confidence            589999999999999999999999999976543110  00000           111  1  334445788999999999


Q ss_pred             EEEEEecCCCc-------EEEEEeCCCcEEECCEEEEcccCccChhhh
Q 013952          227 AVGFTTNADGE-------VKEVKLKDGRTLEADIVVVGVGGRPLISLF  267 (433)
Q Consensus       227 v~~i~~~~~g~-------~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~  267 (433)
                      +.++.. ..+.       .......++.++.+|.+|+|+|.+|+...+
T Consensus        81 v~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i  127 (201)
T PF07992_consen   81 VVSIDP-ESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNI  127 (201)
T ss_dssp             EEEEEE-STTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESS
T ss_pred             cccccc-cccccccCcccceeeccCCceEecCCeeeecCccccceeec
Confidence            999987 2331       112234556789999999999988775533

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=98.22  E-value=6.9e-06  Score=77.26  Aligned_cols=101  Identities=21%  Similarity=0.353  Sum_probs=79.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCC--CeEEEEccCCccCCCC----------CCHHHHHHHHHHHHhcC-cEEEcCCeEE
Q 013952          162 NGKAVVVGGGYIGLELSAALKINN--IDVSMVYPEPWCMPRL----------FTADIAAFYEGYYANKG-IKIIKGTVAV  228 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g--~~V~li~~~~~~~~~~----------~~~~~~~~l~~~l~~~G-V~v~~~~~v~  228 (433)
                      .+++||+|+|+-|+.++..|.+.-  .+|+++++.+..+-..          -+.++...+++.++..+ |+++.+ +|+
T Consensus         3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~-~V~   81 (405)
T COG1252           3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQG-EVT   81 (405)
T ss_pred             CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEE-EEE
Confidence            579999999999999999999874  8899999987654211          13455667788888666 998866 688


Q ss_pred             EEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh
Q 013952          229 GFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF  267 (433)
Q Consensus       229 ~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~  267 (433)
                      +|+.  +.  ..|.++++.++++|.+|+++|..++..-.
T Consensus        82 ~ID~--~~--k~V~~~~~~~i~YD~LVvalGs~~~~fgi  116 (405)
T COG1252          82 DIDR--DA--KKVTLADLGEISYDYLVVALGSETNYFGI  116 (405)
T ss_pred             EEcc--cC--CEEEeCCCccccccEEEEecCCcCCcCCC
Confidence            8876  44  35778887789999999999998877543

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.21  E-value=5.5e-06  Score=83.65  Aligned_cols=33  Identities=36%  Similarity=0.561  Sum_probs=31.0

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      .+||||||+|.|||+||.++++.|.+   |+||||.
T Consensus        12 ~~DVlVIG~G~AGl~AAi~Aa~~G~~---V~vleK~   44 (591)
T PRK07057         12 KFDVVIVGAGGSGMRASLQLARAGLS---VAVLSKV   44 (591)
T ss_pred             cCCEEEECccHHHHHHHHHHHHCCCc---EEEEecc
Confidence            57999999999999999999999887   9999997

>PRK07236 hypothetical protein; Provisional

Probab=98.21  E-value=1.4e-05  Score=76.81  Aligned_cols=102  Identities=25%  Similarity=0.344  Sum_probs=73.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCC-----CCHHHHHHHH------------------------
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL-----FTADIAAFYE------------------------  211 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~-----~~~~~~~~l~------------------------  211 (433)
                      ...+|+|||+|+.|+.+|..|++.|.+|+++++.+......     +.+...+.+.                        
T Consensus         5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g   84 (386)
T PRK07236          5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDG   84 (386)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCC
Confidence            45789999999999999999999999999999876432210     1222222221                        


Q ss_pred             -------------------HHHHh--cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccCh
Q 013952          212 -------------------GYYAN--KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI  264 (433)
Q Consensus       212 -------------------~~l~~--~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~  264 (433)
                                         +.|.+  .++++++++++++++.++++  ..+.+.+|+++.+|.||.|-|.+...
T Consensus        85 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~--v~v~~~~g~~~~ad~vIgADG~~S~v  156 (386)
T PRK07236         85 RVVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDR--VTARFADGRRETADLLVGADGGRSTV  156 (386)
T ss_pred             CEeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCe--EEEEECCCCEEEeCEEEECCCCCchH
Confidence                               11111  13568999999999873333  56888999999999999999976654

>TIGR02053 MerA mercuric reductase

Probab=98.20  E-value=6.6e-06  Score=81.07  Aligned_cols=98  Identities=19%  Similarity=0.227  Sum_probs=71.5

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhCC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKG   85 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (433)
                      .+++|||+|+.|+.+|..|++.|.+   |+++++...++..       .    ..           +....+.+.+++.+
T Consensus       167 ~~vvIIGgG~~g~E~A~~l~~~g~~---Vtli~~~~~~l~~-------~----d~-----------~~~~~l~~~l~~~g  221 (463)
T TIGR02053       167 ESLAVIGGGAIGVELAQAFARLGSE---VTILQRSDRLLPR-------E----EP-----------EISAAVEEALAEEG  221 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCc---EEEEEcCCcCCCc-------c----CH-----------HHHHHHHHHHHHcC
Confidence            6899999999999999999999876   9999987111100       0    00           00123456677889


Q ss_pred             cEEEeCceEEEEECCCC--EEEeC---CCcEEecceEEEccCCCcccc
Q 013952           86 IELILSTEIVRADIASK--TLLSA---TGLIFKYQILVIATGSTVLRL  128 (433)
Q Consensus        86 v~~~~~~~v~~i~~~~~--~v~~~---~~~~~~~d~lvlAtG~~~~~~  128 (433)
                      ++++.++.+..+..++.  .+.+.   +++++++|.+++|+|.+|...
T Consensus       222 V~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~  269 (463)
T TIGR02053       222 IEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNTD  269 (463)
T ss_pred             CEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCCC
Confidence            99999998998876543  23332   235799999999999988754

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK06370 mercuric reductase; Validated

Probab=98.19  E-value=6.5e-06  Score=81.10  Aligned_cols=99  Identities=19%  Similarity=0.227  Sum_probs=71.9

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      ..+++|||||+.|+.+|..|++.|.+   |+++++.......          . ..           +....+.+.+++.
T Consensus       171 ~~~vvVIGgG~~g~E~A~~l~~~G~~---Vtli~~~~~~l~~----------~-~~-----------~~~~~l~~~l~~~  225 (463)
T PRK06370        171 PEHLVIIGGGYIGLEFAQMFRRFGSE---VTVIERGPRLLPR----------E-DE-----------DVAAAVREILERE  225 (463)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCe---EEEEEcCCCCCcc----------c-CH-----------HHHHHHHHHHHhC
Confidence            36899999999999999999999876   9999987211100          0 00           0012345667789


Q ss_pred             CcEEEeCceEEEEECCCCE--EEe---CCCcEEecceEEEccCCCcccc
Q 013952           85 GIELILSTEIVRADIASKT--LLS---ATGLIFKYQILVIATGSTVLRL  128 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~~--v~~---~~~~~~~~d~lvlAtG~~~~~~  128 (433)
                      |++++.++.+..++.++..  +.+   .++.++++|.+++|+|.+|...
T Consensus       226 GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~  274 (463)
T PRK06370        226 GIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTD  274 (463)
T ss_pred             CCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCC
Confidence            9999999999999865432  333   2345799999999999988754

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=98.19  E-value=2.5e-05  Score=72.03  Aligned_cols=98  Identities=19%  Similarity=0.234  Sum_probs=74.1

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCC-------------------------------------------
Q 013952          164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR-------------------------------------------  200 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~-------------------------------------------  200 (433)
                      .|+|||+|+.|+-+|..|++.|.+|+++++.+.....                                           
T Consensus         2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (295)
T TIGR02032         2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPIE   81 (295)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEeccC
Confidence            5899999999999999999999999999877432100                                           


Q ss_pred             ------CCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC-CCcEEECCEEEEcccCccC
Q 013952          201 ------LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK-DGRTLEADIVVVGVGGRPL  263 (433)
Q Consensus       201 ------~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~-~g~~i~~d~vi~a~G~~p~  263 (433)
                            ....++.+.+.+.+++.|++++.+++++++...+++  ..+.+. ++.++++|.||.|+|....
T Consensus        82 ~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~a~~vv~a~G~~s~  149 (295)
T TIGR02032        82 TELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDR--VVVIVRGGEGTVTAKIVIGADGSRSI  149 (295)
T ss_pred             CCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCE--EEEEEcCccEEEEeCEEEECCCcchH
Confidence                  011245667788888899999999999998763333  234433 3457999999999997643

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PLN02661 Putative thiazole synthesis

Probab=98.19  E-value=0.00012  Score=67.64  Aligned_cols=169  Identities=17%  Similarity=0.188  Sum_probs=101.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhC-CCeEEEEccCCccCC----------CC----------------CC----------
Q 013952          161 KNGKAVVVGGGYIGLELSAALKIN-NIDVSMVYPEPWCMP----------RL----------------FT----------  203 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~-g~~V~li~~~~~~~~----------~~----------------~~----------  203 (433)
                      ..-.|+|||+|..|+-+|..|++. |.+|+++++...+..          ..                ++          
T Consensus        91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~dgy~vv~h  170 (357)
T PLN02661         91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQENYVVIKH  170 (357)
T ss_pred             ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccCCCeeEecc
Confidence            456899999999999999999975 899999987643211          00                00          


Q ss_pred             -HHHHHHHH-HHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC------C--C------cEEECCEEEEcccCccChh-h
Q 013952          204 -ADIAAFYE-GYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK------D--G------RTLEADIVVVGVGGRPLIS-L  266 (433)
Q Consensus       204 -~~~~~~l~-~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~------~--g------~~i~~d~vi~a~G~~p~~~-~  266 (433)
                       ..+.+.+. +.+++.||+++.++.+.++.. +++++.++.+.      +  +      ..+.++.||+|||..+... .
T Consensus       171 a~e~~stLi~ka~~~~gVkI~~~t~V~DLI~-~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g~~ga~  249 (357)
T PLN02661        171 AALFTSTIMSKLLARPNVKLFNAVAAEDLIV-KGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDGPFGAT  249 (357)
T ss_pred             hHHHHHHHHHHHHhcCCCEEEeCeEeeeEEe-cCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCCcchhh
Confidence             11122233 344557999999999999876 46677777641      1  1      2689999999999654321 1


Q ss_pred             -hh----ccccc-CCC--cEEeC--C-----CCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhcc
Q 013952          267 -FK----GQVAE-NKG--GIETD--D-----FFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMAT  331 (433)
Q Consensus       267 -~~----~~~~~-~~g--~i~vd--~-----~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~  331 (433)
                       ..    .++.. -.|  ...++  |     +-+--+|++|++|=.+..-.   |.++--+....=...|+.||+.|+..
T Consensus       250 ~~~~~~~~g~~~~~pg~~~~~~~~~e~~~v~~t~ev~pgl~~~gm~~~~~~---g~~rmgp~fg~m~~sg~k~a~~~~~~  326 (357)
T PLN02661        250 GVKRLKSIGMIDSVPGMKALDMNAAEDAIVRLTREVVPGMIVTGMEVAEID---GSPRMGPTFGAMMISGQKAAHLALKA  326 (357)
T ss_pred             hhhcccccCCccCCCCccccchhhHHHHHHhccCcccCCEEEeccchhhhc---CCCccCchhHhHHhhhHHHHHHHHHH
Confidence             10    01100 001  11111  1     11114799999997654321   22222233443446789999888876


Q ss_pred             CC
Q 013952          332 EG  333 (433)
Q Consensus       332 ~~  333 (433)
                      +.
T Consensus       327 l~  328 (357)
T PLN02661        327 LG  328 (357)
T ss_pred             Hc
Confidence            53

>PLN02487 zeta-carotene desaturase

Probab=98.19  E-value=1.6e-05  Score=79.18  Aligned_cols=60  Identities=15%  Similarity=0.147  Sum_probs=48.1

Q ss_pred             CCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecC--CC--cEEEEEe---CCCcEEECCEEEEcccCc
Q 013952          202 FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNA--DG--EVKEVKL---KDGRTLEADIVVVGVGGR  261 (433)
Q Consensus       202 ~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~--~g--~~~~v~~---~~g~~i~~d~vi~a~G~~  261 (433)
                      ....+.+.+.+.++++|+++++++.|.+|..+.  ++  ++.++.+   .+++.+.+|.||+|++..
T Consensus       293 ~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~  359 (569)
T PLN02487        293 PDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVP  359 (569)
T ss_pred             chHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHH
Confidence            455688999999999999999999999998742  23  3677777   344579999999999964

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=98.19  E-value=1.9e-06  Score=81.88  Aligned_cols=117  Identities=20%  Similarity=0.242  Sum_probs=67.4

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-C-CCCCCCCc-----cccccCCC------------CCCCCCC
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-V-APYERPAL-----SKAYLFPE------------GTARLPG   64 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~-~~~~~~~~-----~~~~~~~~------------~~~~~~~   64 (433)
                      +.|||||||||.||..||...++.|.+   ++|+..+ . .....|.+     .|+.+...            ....+.-
T Consensus         3 ~~~DVIVIGgGHAG~EAA~AaARmG~k---tlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~   79 (621)
T COG0445           3 KEYDVIVIGGGHAGVEAALAAARMGAK---TLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQF   79 (621)
T ss_pred             CCCceEEECCCccchHHHHhhhccCCe---EEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCch
Confidence            469999999999999999999999988   7888777 2 11211211     12211111            0000000


Q ss_pred             c--ccccCCC---C-----CCCCHhHH-----HhCCcEEEeCceEEEEECCCC----EEEeCCCcEEecceEEEccCCC
Q 013952           65 F--HVCVGSG---G-----ERLLPEWY-----KEKGIELILSTEIVRADIASK----TLLSATGLIFKYQILVIATGST  124 (433)
Q Consensus        65 ~--~~~~~~~---~-----~~~~~~~~-----~~~~v~~~~~~~v~~i~~~~~----~v~~~~~~~~~~d~lvlAtG~~  124 (433)
                      .  ....|+-   .     ...+..++     ...+++++++ .|.++..++.    -|.+.+|..+.++.|||+||.-
T Consensus        80 r~LN~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~-~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGTF  157 (621)
T COG0445          80 RMLNSSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQG-EVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGTF  157 (621)
T ss_pred             hhccCCCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHh-hhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeeccc
Confidence            0  0000100   0     00111111     1357888886 6666655332    3678899999999999999974

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.19  E-value=2.5e-05  Score=78.45  Aligned_cols=99  Identities=17%  Similarity=0.307  Sum_probs=75.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc-----------CCC---CCCHHHHHHHHHHHHhcCcEEEcCCeEE
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC-----------MPR---LFTADIAAFYEGYYANKGIKIIKGTVAV  228 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~-----------~~~---~~~~~~~~~l~~~l~~~GV~v~~~~~v~  228 (433)
                      ..|+|||+|+.|+.+|..+++.|.+|+++++...-           .+.   ....++.+.+++.+++.|++++ +++|.
T Consensus         5 yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~-~~~V~   83 (555)
T TIGR03143         5 YDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDFGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFL-QAEVL   83 (555)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEe-ccEEE
Confidence            47999999999999999999999999999865310           011   0124677888888889999986 66788


Q ss_pred             EEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChh
Q 013952          229 GFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS  265 (433)
Q Consensus       229 ~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~  265 (433)
                      .+..  ++....+.+.++ .+.+|.+|+|||.+|+..
T Consensus        84 ~i~~--~~~~~~V~~~~g-~~~a~~lVlATGa~p~~~  117 (555)
T TIGR03143        84 DVDF--DGDIKTIKTARG-DYKTLAVLIATGASPRKL  117 (555)
T ss_pred             EEEe--cCCEEEEEecCC-EEEEeEEEECCCCccCCC
Confidence            8876  444456676666 689999999999887653

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.18  E-value=8e-06  Score=80.48  Aligned_cols=98  Identities=16%  Similarity=0.153  Sum_probs=71.8

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhCC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKG   85 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (433)
                      .+++|||||+.|+.+|..|++.|.+   |+|+++......                  ...    .+....+.+.+++.|
T Consensus       173 ~~vvVIGgG~ig~E~A~~l~~~G~~---Vtlv~~~~~~l~------------------~~d----~~~~~~l~~~l~~~g  227 (466)
T PRK07818        173 KSIVIAGAGAIGMEFAYVLKNYGVD---VTIVEFLDRALP------------------NED----AEVSKEIAKQYKKLG  227 (466)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCe---EEEEecCCCcCC------------------ccC----HHHHHHHHHHHHHCC
Confidence            5899999999999999999999876   999987711110                  000    000134566778899


Q ss_pred             cEEEeCceEEEEECCCCE--EEeC--CC--cEEecceEEEccCCCcccc
Q 013952           86 IELILSTEIVRADIASKT--LLSA--TG--LIFKYQILVIATGSTVLRL  128 (433)
Q Consensus        86 v~~~~~~~v~~i~~~~~~--v~~~--~~--~~~~~d~lvlAtG~~~~~~  128 (433)
                      ++++.++.+..++.++..  +.+.  ++  +++++|.+++|+|.+|...
T Consensus       228 V~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~  276 (466)
T PRK07818        228 VKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVE  276 (466)
T ss_pred             CEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccCCC
Confidence            999999999999765543  3333  45  4799999999999988653

>PRK07846 mycothione reductase; Reviewed

Probab=98.18  E-value=9e-06  Score=79.57  Aligned_cols=98  Identities=22%  Similarity=0.304  Sum_probs=70.5

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      ..+++|||||+.|+.+|..|++.|.+   |+++++......  ..         ...+           ...+.+ +.+.
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~G~~---Vtli~~~~~ll~--~~---------d~~~-----------~~~l~~-l~~~  219 (451)
T PRK07846        166 PESLVIVGGGFIAAEFAHVFSALGVR---VTVVNRSGRLLR--HL---------DDDI-----------SERFTE-LASK  219 (451)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEEcCCcccc--cc---------CHHH-----------HHHHHH-HHhc
Confidence            36899999999999999999998876   999998711110  00         0000           011222 2356


Q ss_pred             CcEEEeCceEEEEECCCC--EEEeCCCcEEecceEEEccCCCcccc
Q 013952           85 GIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRL  128 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~~~  128 (433)
                      +++++.++.+..++.+++  .+.+.+++++++|.+++|+|.+|...
T Consensus       220 ~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~  265 (451)
T PRK07846        220 RWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNGD  265 (451)
T ss_pred             CeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCccCcc
Confidence            899999999999986554  35566788899999999999988654

>PLN02576 protoporphyrinogen oxidase

Probab=98.18  E-value=7.1e-05  Score=74.54  Aligned_cols=34  Identities=29%  Similarity=0.390  Sum_probs=31.6

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHc-CCCCCcEEEEcCC
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQ-GVKPGELAIISKE   40 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~-g~~~~~V~lie~~   40 (433)
                      .++||+|||||++||+||++|.+. |++   |+|+|++
T Consensus        11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~---v~vlEa~   45 (496)
T PLN02576         11 SSKDVAVVGAGVSGLAAAYALASKHGVN---VLVTEAR   45 (496)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHhcCCC---EEEEecC
Confidence            357999999999999999999999 887   9999999

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=98.17  E-value=6.4e-06  Score=78.02  Aligned_cols=101  Identities=14%  Similarity=0.084  Sum_probs=68.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCC--------CCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR--------LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT  232 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~--------~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~  232 (433)
                      .+++++|||+|+.|+++|..|.+.|.+|+++++.+.+...        ..+.+......+.+.+.|++++.++.+..+..
T Consensus        17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~v~~~~~   96 (352)
T PRK12770         17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEAGVVFHTRTKVCCGEP   96 (352)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHhCCeEEecCcEEeeccc
Confidence            4789999999999999999999999999999987654311        12334444455566777999999988765432


Q ss_pred             --cCCCcEEEEEe--CCCcEEECCEEEEcccCc
Q 013952          233 --NADGEVKEVKL--KDGRTLEADIVVVGVGGR  261 (433)
Q Consensus       233 --~~~g~~~~v~~--~~g~~i~~d~vi~a~G~~  261 (433)
                        ..++.......  .++..+.+|.+|+|+|..
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~  129 (352)
T PRK12770         97 LHEEEGDEFVERIVSLEELVKKYDAVLIATGTW  129 (352)
T ss_pred             cccccccccccccCCHHHHHhhCCEEEEEeCCC
Confidence              00111111111  112247899999999973

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=98.16  E-value=1.4e-05  Score=83.51  Aligned_cols=91  Identities=22%  Similarity=0.271  Sum_probs=68.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC-------CCC-CCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PRL-FTADIAAFYEGYYANKGIKIIKGTVAVGFTT  232 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~-------~~~-~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~  232 (433)
                      .+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.       |.+ .+.++.+.-.+.+++.||++++++.+ .+..
T Consensus       538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~V-di~l  616 (1019)
T PRK09853        538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSP-DLTV  616 (1019)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEeCcee-EEEh
Confidence            46899999999999999999999999999999765431       211 34566666667788899999999876 2322


Q ss_pred             cCCCcEEEEEeCCCcEEECCEEEEcccCccC
Q 013952          233 NADGEVKEVKLKDGRTLEADIVVVGVGGRPL  263 (433)
Q Consensus       233 ~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~  263 (433)
                                 .+.+...+|.||+|||.++.
T Consensus       617 -----------e~L~~~gYDaVILATGA~~~  636 (1019)
T PRK09853        617 -----------EQLKNEGYDYVVVAIGADKN  636 (1019)
T ss_pred             -----------hhheeccCCEEEECcCCCCC
Confidence                       12234568999999998753

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.16  E-value=8.2e-06  Score=79.87  Aligned_cols=99  Identities=17%  Similarity=0.156  Sum_probs=73.1

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      ..+++|||||+.|+-.|..|++.|.+   |+++++...+...  +.         .           .......+.+++.
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~g~~---Vtli~~~~~il~~--~d---------~-----------~~~~~~~~~l~~~  220 (450)
T TIGR01421       166 PKRVVIVGAGYIAVELAGVLHGLGSE---THLVIRHERVLRS--FD---------S-----------MISETITEEYEKE  220 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCc---EEEEecCCCCCcc--cC---------H-----------HHHHHHHHHHHHc
Confidence            36899999999999999999999877   9999987111100  00         0           0013355667889


Q ss_pred             CcEEEeCceEEEEECCC---CEEEeCCC-cEEecceEEEccCCCcccc
Q 013952           85 GIELILSTEIVRADIAS---KTLLSATG-LIFKYQILVIATGSTVLRL  128 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~---~~v~~~~~-~~~~~d~lvlAtG~~~~~~  128 (433)
                      |++++.++.+..+..+.   ..+.+.++ .++.+|.+++|+|..|...
T Consensus       221 gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~  268 (450)
T TIGR01421       221 GINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTK  268 (450)
T ss_pred             CCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCcc
Confidence            99999999999987542   24556666 5799999999999988754

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=98.16  E-value=7.6e-06  Score=86.39  Aligned_cols=93  Identities=20%  Similarity=0.152  Sum_probs=72.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC-------CC-CCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT  232 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~-------~~-~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~  232 (433)
                      .+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.       |. -++.++.+...+.+++.||+|++++.+.    
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG----  380 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVG----  380 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEec----
Confidence            47999999999999999999999999999999865421       11 1467788888888999999999886542    


Q ss_pred             cCCCcEEEEEeCCCcEEECCEEEEcccCc-cC
Q 013952          233 NADGEVKEVKLKDGRTLEADIVVVGVGGR-PL  263 (433)
Q Consensus       233 ~~~g~~~~v~~~~g~~i~~d~vi~a~G~~-p~  263 (433)
                            ..+.+.+.....+|.|++|+|.. |+
T Consensus       381 ------~dit~~~l~~~~yDAV~LAtGA~~pr  406 (944)
T PRK12779        381 ------KTATLEDLKAAGFWKIFVGTGAGLPT  406 (944)
T ss_pred             ------cEEeHHHhccccCCEEEEeCCCCCCC
Confidence                  12444444456799999999974 54

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=98.16  E-value=9.4e-06  Score=82.33  Aligned_cols=33  Identities=27%  Similarity=0.400  Sum_probs=31.1

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      .+||||||+|.||++||.++++.|.+   |+||||.
T Consensus        50 ~~DVlVIG~G~AGl~AAl~Aae~G~~---VilveK~   82 (635)
T PLN00128         50 TYDAVVVGAGGAGLRAAIGLSEHGFN---TACITKL   82 (635)
T ss_pred             ecCEEEECccHHHHHHHHHHHhcCCc---EEEEEcC
Confidence            47999999999999999999999987   9999998

>PLN02463 lycopene beta cyclase

Probab=98.15  E-value=2.9e-05  Score=75.33  Aligned_cols=98  Identities=19%  Similarity=0.265  Sum_probs=73.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC-CCC----------------------------------------
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-PRL----------------------------------------  201 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~-~~~----------------------------------------  201 (433)
                      -.|+|||+|+.|+.+|..|++.|.+|.++++.+... +..                                        
T Consensus        29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~~y  108 (447)
T PLN02463         29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLDRPY  108 (447)
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccccCcc
Confidence            379999999999999999999999999998754211 000                                        


Q ss_pred             ---CCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccC
Q 013952          202 ---FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL  263 (433)
Q Consensus       202 ---~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~  263 (433)
                         ...++.+.+.+.+.+.||+++ ..+|.+++..++  ...|.+++|++++||.||.|+|..+.
T Consensus       109 ~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~--~~~V~~~dG~~i~A~lVI~AdG~~s~  170 (447)
T PLN02463        109 GRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEES--KSLVVCDDGVKIQASLVLDATGFSRC  170 (447)
T ss_pred             eeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCC--eEEEEECCCCEEEcCEEEECcCCCcC
Confidence               011334556666677899997 568999987332  35788889989999999999997654

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=98.15  E-value=8.7e-06  Score=80.37  Aligned_cols=99  Identities=15%  Similarity=0.213  Sum_probs=71.6

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      ..+++|||+|+.|+.+|..|++.|.+   |+++++......  ..         ..           +......+.+++.
T Consensus       183 ~~~vvVvGgG~~g~E~A~~l~~~g~~---Vtli~~~~~~l~--~~---------d~-----------~~~~~~~~~l~~~  237 (475)
T PRK06327        183 PKKLAVIGAGVIGLELGSVWRRLGAE---VTILEALPAFLA--AA---------DE-----------QVAKEAAKAFTKQ  237 (475)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEeCCCccCC--cC---------CH-----------HHHHHHHHHHHHc
Confidence            36899999999999999999998876   999998711100  00         00           0012345667788


Q ss_pred             CcEEEeCceEEEEECCCCE--EEeCC--C--cEEecceEEEccCCCcccc
Q 013952           85 GIELILSTEIVRADIASKT--LLSAT--G--LIFKYQILVIATGSTVLRL  128 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~~--v~~~~--~--~~~~~d~lvlAtG~~~~~~  128 (433)
                      |++++.++.+..++.++..  +.+.+  +  +++++|.+++|+|..|...
T Consensus       238 gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~  287 (475)
T PRK06327        238 GLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTD  287 (475)
T ss_pred             CcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccCCC
Confidence            9999999999999865543  33333  2  4699999999999988754

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=98.14  E-value=8.5e-06  Score=80.04  Aligned_cols=90  Identities=22%  Similarity=0.271  Sum_probs=70.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC-------CC-CCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT  232 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~-------~~-~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~  232 (433)
                      .+++++|||+|+.|+.+|..|.+.|.+|+++++.+.+.       +. ..+.++.+...+.+++.||++++++.+..   
T Consensus       139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~---  215 (457)
T PRK11749        139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTEVGR---  215 (457)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHcCCEEEeCCEECC---
Confidence            46899999999999999999999999999999876542       11 13667888888889999999999987521   


Q ss_pred             cCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013952          233 NADGEVKEVKLKDGRTLEADIVVVGVGGR  261 (433)
Q Consensus       233 ~~~g~~~~v~~~~g~~i~~d~vi~a~G~~  261 (433)
                             .+.+.+. .+.+|.||+|||..
T Consensus       216 -------~v~~~~~-~~~~d~vvlAtGa~  236 (457)
T PRK11749        216 -------DITLDEL-RAGYDAVFIGTGAG  236 (457)
T ss_pred             -------ccCHHHH-HhhCCEEEEccCCC
Confidence                   1222222 36799999999975

>PF14759 Reductase_C: Reductase C-terminal; PDB: 3FG2_P 3LXD_A 2YVG_A 2GR1_A 2GQW_A 2GR3_A 2YVF_A 1F3P_A 2GR0_A 2GR2_A

Probab=98.13  E-value=2.8e-05  Score=56.65  Aligned_cols=79  Identities=22%  Similarity=0.457  Sum_probs=62.5

Q ss_pred             eEEEeecccceEEecCCCC--cEEEEcCCCccccCCcEEEEEEeCCEEEEEEEecCChHHHHHHHHHHHcCCCCCChhhh
Q 013952          345 YFYSRAFDLSWQFYGDNVG--DTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLDVL  422 (433)
Q Consensus       345 ~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  422 (433)
                      ||||.+++..++.+|...+  +.+..|+..    ...|..+++++|+|+|+..++ .+.++..+..+|+.+..+ +.+.|
T Consensus         1 ~FWSdQ~~~~iq~~G~~~~~~~~v~rg~~~----~~~~~~~y~~~g~lva~~~vn-~~~~~~~~rrli~~~~~~-~~~~l   74 (85)
T PF14759_consen    1 WFWSDQYGVRIQIAGLPGGADEVVVRGDPE----SGKFVAFYLRDGRLVAAVSVN-RPRDLRAARRLIAAGARV-DPARL   74 (85)
T ss_dssp             EEEEEETTEEEEEEE-STTSSEEEEEEETT----TTEEEEEEEETTEEEEEEEES--HHHHHHHHHHHHTT-B---HHHH
T ss_pred             CeecccCCCeEEEEECCCCCCEEEEEccCC----CCcEEEEEEcCCEEEEEEecC-CHHHHHHHHHHHHCCCCc-CHHHh
Confidence            6899999999999997653  456777754    578888899999999999996 678899999999999977 57888


Q ss_pred             cccCCCc
Q 013952          423 KNEGLSF  429 (433)
Q Consensus       423 ~~~~~~~  429 (433)
                      .++.++.
T Consensus        75 ~d~~~~L   81 (85)
T PF14759_consen   75 ADPSVDL   81 (85)
T ss_dssp             HSTTSHH
T ss_pred             cCCCCCh
Confidence            8888764

...

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.13  E-value=9.2e-05  Score=74.26  Aligned_cols=65  Identities=26%  Similarity=0.181  Sum_probs=48.8

Q ss_pred             CCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC-CCc--EEEC-CEEEEccc-CccChhhh
Q 013952          202 FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK-DGR--TLEA-DIVVVGVG-GRPLISLF  267 (433)
Q Consensus       202 ~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~-~g~--~i~~-d~vi~a~G-~~p~~~~~  267 (433)
                      ....+...+.+.+++.||+++++++++++.. +++++..|... ++.  .+.+ +.||+|+| +.-|.++.
T Consensus       215 ~G~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~-~~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~n~em~  284 (564)
T PRK12845        215 GGQALAAGLFAGVLRAGIPIWTETSLVRLTD-DGGRVTGAVVDHRGREVTVTARRGVVLAAGGFDHDMEMR  284 (564)
T ss_pred             ChHHHHHHHHHHHHHCCCEEEecCEeeEEEe-cCCEEEEEEEEECCcEEEEEcCCEEEEecCCccccHHHH
Confidence            3578888899989999999999999999876 46888887543 342  3556 57999999 44454444

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=98.13  E-value=4.5e-05  Score=73.50  Aligned_cols=102  Identities=24%  Similarity=0.324  Sum_probs=77.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC--------------C-----------------C-C--------
Q 013952          162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM--------------P-----------------R-L--------  201 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~--------------~-----------------~-~--------  201 (433)
                      ...|+|||+|+.|+-+|..|++.|.+|+++++.+...              +                 . .        
T Consensus         6 ~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~   85 (392)
T PRK08773          6 RRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRMRV   85 (392)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEEEE
Confidence            4589999999999999999999999999998753110              0                 0 0        


Q ss_pred             ----------C---------------CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEE
Q 013952          202 ----------F---------------TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVV  256 (433)
Q Consensus       202 ----------~---------------~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~  256 (433)
                                +               ...+.+.+.+.+++.|+++++++++++++.++++  ..+++.+|+++.+|.||.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~--v~v~~~~g~~~~a~~vV~  163 (392)
T PRK08773         86 WDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADR--VRLRLDDGRRLEAALAIA  163 (392)
T ss_pred             EeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCe--EEEEECCCCEEEeCEEEE
Confidence                      0               0133455666677789999999999999873332  457788888899999999


Q ss_pred             cccCccChh
Q 013952          257 GVGGRPLIS  265 (433)
Q Consensus       257 a~G~~p~~~  265 (433)
                      |.|..+...
T Consensus       164 AdG~~S~vr  172 (392)
T PRK08773        164 ADGAASTLR  172 (392)
T ss_pred             ecCCCchHH
Confidence            999887543

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=98.13  E-value=4.5e-05  Score=76.99  Aligned_cols=64  Identities=19%  Similarity=0.171  Sum_probs=49.4

Q ss_pred             CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCC-c--EEEC-CEEEEccc-CccChhhh
Q 013952          203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG-R--TLEA-DIVVVGVG-GRPLISLF  267 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g-~--~i~~-d~vi~a~G-~~p~~~~~  267 (433)
                      ...+...+.+.+++.||+++.++.+.++.. +++++..|...++ +  .+.+ +.||+|+| +..|.+++
T Consensus       220 G~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~-~~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n~em~  288 (578)
T PRK12843        220 GNALIGRLLYSLRARGVRILTQTDVESLET-DHGRVIGATVVQGGVRRRIRARGGVVLATGGFNRHPQLR  288 (578)
T ss_pred             cHHHHHHHHHHHHhCCCEEEeCCEEEEEEe-eCCEEEEEEEecCCeEEEEEccceEEECCCCcccCHHHH
Confidence            667888899999999999999999999876 4678888776543 2  4776 68999999 44444444

>PRK06475 salicylate hydroxylase; Provisional

Probab=98.12  E-value=1.1e-05  Score=77.95  Aligned_cols=32  Identities=38%  Similarity=0.396  Sum_probs=30.5

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      .+|+|||||++|+++|..|++.|++   |+|+|+.
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G~~---V~i~E~~   34 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARGWA---VTIIEKA   34 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCc---EEEEecC
Confidence            6899999999999999999999987   9999988

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=98.12  E-value=3.3e-06  Score=58.62  Aligned_cols=28  Identities=36%  Similarity=0.553  Sum_probs=25.8

Q ss_pred             EECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952           10 ILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus        10 IIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      |||||++||++|..|++.|++   |+|+|++
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~---v~v~E~~   28 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYR---VTVFEKN   28 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSE---EEEEESS
T ss_pred             CEeeCHHHHHHHHHHHHCCCc---EEEEecC
Confidence            899999999999999999876   9999999

...

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=98.11  E-value=1.2e-05  Score=79.23  Aligned_cols=98  Identities=17%  Similarity=0.286  Sum_probs=72.9

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhCC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKG   85 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (433)
                      .+++|||+|+.|+-.|..|++.|.+   |+++++.......          . ..           .....+.+.+++.|
T Consensus       178 ~~vvVIGgG~ig~E~A~~l~~~g~~---Vtli~~~~~~l~~----------~-d~-----------~~~~~l~~~L~~~g  232 (466)
T PRK07845        178 EHLIVVGSGVTGAEFASAYTELGVK---VTLVSSRDRVLPG----------E-DA-----------DAAEVLEEVFARRG  232 (466)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCe---EEEEEcCCcCCCC----------C-CH-----------HHHHHHHHHHHHCC
Confidence            5899999999999999999998876   9999887111100          0 00           00123456778899


Q ss_pred             cEEEeCceEEEEECCCC--EEEeCCCcEEecceEEEccCCCcccc
Q 013952           86 IELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRL  128 (433)
Q Consensus        86 v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~~~  128 (433)
                      ++++.++.+..++.++.  .+.+.+++++++|.+++|+|..|...
T Consensus       233 V~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~~  277 (466)
T PRK07845        233 MTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNTA  277 (466)
T ss_pred             cEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCCC
Confidence            99999999998864433  35556788899999999999988754

>PRK07538 hypothetical protein; Provisional

Probab=98.11  E-value=1.1e-05  Score=78.29  Aligned_cols=32  Identities=22%  Similarity=0.476  Sum_probs=30.3

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      +||+|||||++|+++|..|++.|++   |+|+|+.
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~G~~---v~v~E~~   32 (413)
T PRK07538          1 MKVLIAGGGIGGLTLALTLHQRGIE---VVVFEAA   32 (413)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCc---EEEEEcC
Confidence            3899999999999999999999998   9999998

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.11  E-value=9.4e-05  Score=67.78  Aligned_cols=99  Identities=17%  Similarity=0.248  Sum_probs=74.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCe-EEEEccC---------------CccCCCCCCHHHHHHHHHHHHhcCcEEEcCCe
Q 013952          163 GKAVVVGGGYIGLELSAALKINNID-VSMVYPE---------------PWCMPRLFTADIAAFYEGYYANKGIKIIKGTV  226 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~-V~li~~~---------------~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~  226 (433)
                      -.++|||+|+.|+-+|-++.+.+.+ +.+++..               +.+......+++.+.+++..+..|+++.. ..
T Consensus         4 ~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~-~~   82 (305)
T COG0492           4 YDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVE-DE   82 (305)
T ss_pred             eeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEE-EE
Confidence            4789999999999999999999988 4444332               11111124568888888888999999988 67


Q ss_pred             EEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChh
Q 013952          227 AVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS  265 (433)
Q Consensus       227 v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~  265 (433)
                      |.+++.  .+....|.+.+++ ++|+.||+|+|..+...
T Consensus        83 v~~v~~--~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~~  118 (305)
T COG0492          83 VEKVEL--EGGPFKVKTDKGT-YEAKAVIIATGAGARKL  118 (305)
T ss_pred             EEEEee--cCceEEEEECCCe-EEEeEEEECcCCcccCC
Confidence            777776  2226788888886 99999999999766543

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=98.10  E-value=1.7e-05  Score=80.66  Aligned_cols=35  Identities=14%  Similarity=0.259  Sum_probs=32.1

Q ss_pred             CCcCeEEEECCCHHHHHHHHHHHHc-CCCCCcEEEEcCC
Q 013952            3 EKSFKYVILGGGVSAGYAAREFAKQ-GVKPGELAIISKE   40 (433)
Q Consensus         3 ~~~~dvvIIGgG~aGl~aA~~l~~~-g~~~~~V~lie~~   40 (433)
                      .+++||+||||||+||++|..|++. |.+   |+|||+.
T Consensus        30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~---v~IiE~~   65 (634)
T PRK08294         30 PDEVDVLIVGCGPAGLTLAAQLSAFPDIT---TRIVERK   65 (634)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHhcCCCCc---EEEEEcC
Confidence            4578999999999999999999995 988   9999988

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=98.10  E-value=4.4e-05  Score=74.13  Aligned_cols=42  Identities=12%  Similarity=0.151  Sum_probs=32.7

Q ss_pred             CcEEEeCceEEEEECCCC--EEEeCCCcEEecceEEEccCCCcc
Q 013952           85 GIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVL  126 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~  126 (433)
                      ...+..+++|.+++....  ++.+.++.++++|.||.|.|....
T Consensus       117 ~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~  160 (414)
T TIGR03219       117 EGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKSA  160 (414)
T ss_pred             CceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccHH
Confidence            455778889999876554  466678889999999999997643

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PLN02507 glutathione reductase

Probab=98.10  E-value=1.4e-05  Score=79.16  Aligned_cols=99  Identities=20%  Similarity=0.302  Sum_probs=73.4

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      ..+++|||||+.|+-.|..+++.|.+   |+|+++...++.                  .+    .......+.+.+++.
T Consensus       203 ~k~vvVIGgG~ig~E~A~~l~~~G~~---Vtli~~~~~~l~------------------~~----d~~~~~~l~~~l~~~  257 (499)
T PLN02507        203 PKRAVVLGGGYIAVEFASIWRGMGAT---VDLFFRKELPLR------------------GF----DDEMRAVVARNLEGR  257 (499)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCe---EEEEEecCCcCc------------------cc----CHHHHHHHHHHHHhC
Confidence            35899999999999999999998876   999987721110                  00    000012345667889


Q ss_pred             CcEEEeCceEEEEECCCC--EEEeCCCcEEecceEEEccCCCcccc
Q 013952           85 GIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRL  128 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~~~  128 (433)
                      |++++.++.+..+..+++  .+.+.+++++++|.+++|+|.+|...
T Consensus       258 GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~  303 (499)
T PLN02507        258 GINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNTK  303 (499)
T ss_pred             CCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCCC
Confidence            999999999999875433  35566777899999999999988654

>PRK06834 hypothetical protein; Provisional

Probab=98.10  E-value=6.1e-05  Score=74.39  Aligned_cols=101  Identities=33%  Similarity=0.554  Sum_probs=76.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC---CCC--CC----------------------------------
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM---PRL--FT----------------------------------  203 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~---~~~--~~----------------------------------  203 (433)
                      ..|+|||+|+.|+-+|..|++.|.+|+++++.+...   ++.  +.                                  
T Consensus         4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~   83 (488)
T PRK06834          4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRLD   83 (488)
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEecc
Confidence            479999999999999999999999999998754211   000  00                                  


Q ss_pred             ----------------HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChh
Q 013952          204 ----------------ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS  265 (433)
Q Consensus       204 ----------------~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~  265 (433)
                                      ..+.+.+.+.+++.||++++++++++++.++++  ..+++.+|+++.+|.||.|.|.++...
T Consensus        84 ~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~--v~v~~~~g~~i~a~~vVgADG~~S~vR  159 (488)
T PRK06834         84 ISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTG--VDVELSDGRTLRAQYLVGCDGGRSLVR  159 (488)
T ss_pred             cccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCe--EEEEECCCCEEEeCEEEEecCCCCCcH
Confidence                            123345556677789999999999999874333  456777788899999999999877553

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.10  E-value=1.3e-05  Score=78.87  Aligned_cols=99  Identities=14%  Similarity=0.242  Sum_probs=71.0

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      ..+++|||||+.|+..|..+++.|.+   |+++++.....                  +.+.    ......+.+.+++.
T Consensus       174 ~~~vvIIGgG~ig~E~A~~l~~~G~~---Vtlie~~~~il------------------~~~d----~~~~~~l~~~l~~~  228 (466)
T PRK06115        174 PKHLVVIGAGVIGLELGSVWRRLGAQ---VTVVEYLDRIC------------------PGTD----TETAKTLQKALTKQ  228 (466)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEeCCCCCC------------------CCCC----HHHHHHHHHHHHhc
Confidence            46899999999999999999999876   99998871111                  0000    00013345677788


Q ss_pred             CcEEEeCceEEEEECCCCE--EEeC---C--CcEEecceEEEccCCCcccc
Q 013952           85 GIELILSTEIVRADIASKT--LLSA---T--GLIFKYQILVIATGSTVLRL  128 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~~--v~~~---~--~~~~~~d~lvlAtG~~~~~~  128 (433)
                      |++++.++.+..+..++..  +.+.   +  ++++++|.+++|+|..|...
T Consensus       229 gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~  279 (466)
T PRK06115        229 GMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQ  279 (466)
T ss_pred             CCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccccc
Confidence            9999999999998764333  3322   2  35799999999999988643

>PRK08244 hypothetical protein; Provisional

Probab=98.09  E-value=4.9e-05  Score=75.54  Aligned_cols=102  Identities=25%  Similarity=0.420  Sum_probs=74.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCC-----------------------------------------
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL-----------------------------------------  201 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~-----------------------------------------  201 (433)
                      ..|+|||+|+.|+-+|..|++.|.+|+++++.+...+..                                         
T Consensus         3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~   82 (493)
T PRK08244          3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTRL   82 (493)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecccccC
Confidence            369999999999999999999999999998753211000                                         


Q ss_pred             -C--------------CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCC-cEEECCEEEEcccCccCh
Q 013952          202 -F--------------TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG-RTLEADIVVVGVGGRPLI  264 (433)
Q Consensus       202 -~--------------~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g-~~i~~d~vi~a~G~~p~~  264 (433)
                       +              ...+.+.+.+.+++.|+++++++++.+++.++++....+...+| +++++|.||.|.|.+...
T Consensus        83 ~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~v  161 (493)
T PRK08244         83 DFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGSIV  161 (493)
T ss_pred             CcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCChHH
Confidence             0              01344556667778899999999999998744442223333345 479999999999987654

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=98.09  E-value=1e-05  Score=82.47  Aligned_cols=37  Identities=19%  Similarity=0.236  Sum_probs=33.0

Q ss_pred             CCCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      |-...+||||||||.|||+||.++++.|.+   |+||++.
T Consensus         1 ~~~~~~DVlVIG~G~AGl~AAi~Aae~G~~---VivleK~   37 (657)
T PRK08626          1 MKIIYTDALVIGAGLAGLRVAIAAAQRGLD---TIVLSLV   37 (657)
T ss_pred             CCceeccEEEECccHHHHHHHHHHHHcCCC---EEEEeCC
Confidence            334468999999999999999999999987   9999987

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.09  E-value=1.5e-05  Score=80.35  Aligned_cols=33  Identities=30%  Similarity=0.454  Sum_probs=31.1

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      .+||||||+|.|||+||.++++.|.+   |+|+||.
T Consensus         7 ~~DVlVVG~G~AGl~AAi~Aa~~G~~---V~lleK~   39 (588)
T PRK08958          7 EFDAVVIGAGGAGMRAALQISQSGQS---CALLSKV   39 (588)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCc---EEEEEcc
Confidence            57999999999999999999999987   9999998

>TIGR00136 gidA glucose-inhibited division protein A

Probab=98.08  E-value=2.3e-05  Score=77.48  Aligned_cols=32  Identities=28%  Similarity=0.499  Sum_probs=30.2

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      |||+|||||+||+.+|..+++.|.+   |+|+++.
T Consensus         1 yDViVIGaG~AGl~aA~ala~~G~~---v~Lie~~   32 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAARMGAK---TLLLTLN   32 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCC---EEEEecc
Confidence            6999999999999999999999987   9999986

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PRK07045 putative monooxygenase; Reviewed

Probab=98.08  E-value=7.2e-05  Score=72.01  Aligned_cols=104  Identities=19%  Similarity=0.278  Sum_probs=77.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCC--C--C-----------------------------------
Q 013952          162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR--L--F-----------------------------------  202 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~--~--~-----------------------------------  202 (433)
                      ..+|+|||+|+.|+-+|..|++.|.+|+++++.+.+...  .  +                                   
T Consensus         5 ~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~   84 (388)
T PRK07045          5 PVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDKE   84 (388)
T ss_pred             eeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCCc
Confidence            347999999999999999999999999999865432100  0  0                                   


Q ss_pred             -------------C-------HHHHHHHHHHHH-hcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013952          203 -------------T-------ADIAAFYEGYYA-NKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR  261 (433)
Q Consensus       203 -------------~-------~~~~~~l~~~l~-~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~  261 (433)
                                   .       .++.+.+.+.+. ..|++++++++++.++.++++.+..|.+.+|+++.+|.||-|.|.+
T Consensus        85 ~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~  164 (388)
T PRK07045         85 LIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGAR  164 (388)
T ss_pred             EEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCC
Confidence                         0       022333444443 3589999999999998766665667888899999999999999977


Q ss_pred             cChh
Q 013952          262 PLIS  265 (433)
Q Consensus       262 p~~~  265 (433)
                      ....
T Consensus       165 S~vR  168 (388)
T PRK07045        165 SMIR  168 (388)
T ss_pred             hHHH
Confidence            6443

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.07  E-value=6.8e-05  Score=72.56  Aligned_cols=99  Identities=30%  Similarity=0.406  Sum_probs=75.5

Q ss_pred             cEEEECCCHHHHHHHHHHHhCC--CeEEEEccCCccCCC-----------------------------------------
Q 013952          164 KAVVVGGGYIGLELSAALKINN--IDVSMVYPEPWCMPR-----------------------------------------  200 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g--~~V~li~~~~~~~~~-----------------------------------------  200 (433)
                      .|+|||+|+.|+-+|..|++.|  .+|+++++.+...+.                                         
T Consensus         3 dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~   82 (403)
T PRK07333          3 DVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITDSR   82 (403)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEeCC
Confidence            6899999999999999999985  899999875321000                                         


Q ss_pred             ----------C---------------CCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEE
Q 013952          201 ----------L---------------FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVV  255 (433)
Q Consensus       201 ----------~---------------~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi  255 (433)
                                .               ....+.+.+.+.+++.|++++++++|++++.++  ....+.+.+|+++.+|.||
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v~v~~~~g~~~~ad~vI  160 (403)
T PRK07333         83 TSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRD--EGVTVTLSDGSVLEARLLV  160 (403)
T ss_pred             CCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcC--CEEEEEECCCCEEEeCEEE
Confidence                      0               002345566677778899999999999998633  3356778888899999999


Q ss_pred             EcccCccCh
Q 013952          256 VGVGGRPLI  264 (433)
Q Consensus       256 ~a~G~~p~~  264 (433)
                      .|.|.++..
T Consensus       161 ~AdG~~S~v  169 (403)
T PRK07333        161 AADGARSKL  169 (403)
T ss_pred             EcCCCChHH
Confidence            999987654

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=98.07  E-value=1e-05  Score=79.07  Aligned_cols=92  Identities=18%  Similarity=0.192  Sum_probs=69.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC-------CC-CCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT  232 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~-------~~-~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~  232 (433)
                      .+++++|||+|+.|+.+|..|++.|.+|+++++.+.+.       +. .++.++.+...+.+++.||++++++.+..   
T Consensus       132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~---  208 (449)
T TIGR01316       132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLVGK---  208 (449)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCCcEEEeCCccCC---
Confidence            46799999999999999999999999999999865431       11 14667777777888999999999975411   


Q ss_pred             cCCCcEEEEEeCCCcEEECCEEEEcccC-ccC
Q 013952          233 NADGEVKEVKLKDGRTLEADIVVVGVGG-RPL  263 (433)
Q Consensus       233 ~~~g~~~~v~~~~g~~i~~d~vi~a~G~-~p~  263 (433)
                             .+.+.+. ...+|.||+|+|. +|.
T Consensus       209 -------~v~~~~~-~~~yd~viiAtGa~~p~  232 (449)
T TIGR01316       209 -------TATLEEL-FSQYDAVFIGTGAGLPK  232 (449)
T ss_pred             -------cCCHHHH-HhhCCEEEEeCCCCCCC
Confidence                   1223322 3468999999997 554

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PLN02815 L-aspartate oxidase

Probab=98.06  E-value=0.00012  Score=73.86  Aligned_cols=57  Identities=16%  Similarity=0.291  Sum_probs=41.7

Q ss_pred             CHHHHHHHHHHHHhc-CcEEEcCCeEEEEEecCCC---cEEEEEe---CCCc--EEECCEEEEccc
Q 013952          203 TADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADG---EVKEVKL---KDGR--TLEADIVVVGVG  259 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~-GV~v~~~~~v~~i~~~~~g---~~~~v~~---~~g~--~i~~d~vi~a~G  259 (433)
                      ...+...+.+.+++. ||+++.++.+.++..++++   ++.++..   .+|+  .+.++.||+|||
T Consensus       154 G~~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATG  219 (594)
T PLN02815        154 GREIERALLEAVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASG  219 (594)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCC
Confidence            456777777777654 9999999999998764344   2667654   3453  568999999999

>PRK08163 salicylate hydroxylase; Provisional

Probab=98.06  E-value=6.5e-05  Score=72.51  Aligned_cols=101  Identities=22%  Similarity=0.240  Sum_probs=74.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCC----------------------------------C------
Q 013952          162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----------------------------------L------  201 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~----------------------------------~------  201 (433)
                      +.+|+|||+|+.|+-+|..|++.|.+|+++++.+.+...                                  .      
T Consensus         4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~   83 (396)
T PRK08163          4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVDA   83 (396)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeCCCC
Confidence            568999999999999999999999999999876432100                                  0      


Q ss_pred             -------C----------------CHHHHHHHHHHHHhc-CcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEc
Q 013952          202 -------F----------------TADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVG  257 (433)
Q Consensus       202 -------~----------------~~~~~~~l~~~l~~~-GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a  257 (433)
                             +                ..++.+.+.+.+.+. +|++++++++.++..++++  ..+.+.+|+++.+|.||.|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~v~~~~g~~~~ad~vV~A  161 (396)
T PRK08163         84 EEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDG--VTVFDQQGNRWTGDALIGC  161 (396)
T ss_pred             CEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCc--eEEEEcCCCEEecCEEEEC
Confidence                   0                011233444445444 4999999999999863332  4577888888999999999


Q ss_pred             ccCccCh
Q 013952          258 VGGRPLI  264 (433)
Q Consensus       258 ~G~~p~~  264 (433)
                      .|.....
T Consensus       162 dG~~S~~  168 (396)
T PRK08163        162 DGVKSVV  168 (396)
T ss_pred             CCcChHH
Confidence            9986654

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.05  E-value=1.2e-05  Score=80.61  Aligned_cols=55  Identities=20%  Similarity=0.165  Sum_probs=40.5

Q ss_pred             CCCcEEeCCCCCCCCCCeEEcCccccccccccCcccc-cccHHHHHHHHHHHHHHHhcc
Q 013952          274 NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRR-VEHVDHARKSAEQAVKTIMAT  331 (433)
Q Consensus       274 ~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~-~~~~~~A~~~g~~aa~~i~~~  331 (433)
                      ..|+|.+|.++||.+||+||+|++++...   |..+. -.+...|.-.|++|++++...
T Consensus       347 t~GGi~vd~~~~t~IpGLyAaGE~~gg~h---G~~rlgG~sl~~a~v~Gr~Ag~~aa~~  402 (543)
T PRK06263        347 FMGGIRINEDCETNIPGLFACGEVAGGVH---GANRLGGNALADTQVFGAIAGKSAAKN  402 (543)
T ss_pred             ecCCEEECCCCcccCCCeEeccccccCCC---CCCccchhhhhhhHHHHHHHHHHHHHH
Confidence            56899999999999999999999975432   21111 134556777888888888754

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=98.05  E-value=0.00011  Score=68.92  Aligned_cols=41  Identities=27%  Similarity=0.353  Sum_probs=35.1

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERP   47 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~   47 (433)
                      +..||||||+|.+||+||++|.+.|++   |+|+|.......|+
T Consensus         6 ~~~~viivGaGlaGL~AA~eL~kaG~~---v~ilEar~r~GGR~   46 (450)
T COG1231           6 KTADVIIVGAGLAGLSAAYELKKAGYQ---VQILEARDRVGGRS   46 (450)
T ss_pred             CCCcEEEECCchHHHHHHHHHhhcCcE---EEEEeccCCcCcee
Confidence            468999999999999999999999998   99999984444443

>TIGR03452 mycothione_red mycothione reductase

Probab=98.05  E-value=2.1e-05  Score=77.02  Aligned_cols=98  Identities=21%  Similarity=0.289  Sum_probs=69.7

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      ..+++|||||+.|+..|..|++.|.+   |+++++......  .     +.    ..+           ...+.+ +.+.
T Consensus       169 ~k~vvVIGgG~ig~E~A~~l~~~G~~---Vtli~~~~~ll~--~-----~d----~~~-----------~~~l~~-~~~~  222 (452)
T TIGR03452       169 PESLVIVGGGYIAAEFAHVFSALGTR---VTIVNRSTKLLR--H-----LD----EDI-----------SDRFTE-IAKK  222 (452)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCc---EEEEEccCcccc--c-----cC----HHH-----------HHHHHH-HHhc
Confidence            36899999999999999999999876   999998711110  0     00    000           111222 2346


Q ss_pred             CcEEEeCceEEEEECCCC--EEEeCCCcEEecceEEEccCCCcccc
Q 013952           85 GIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRL  128 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~~~  128 (433)
                      +++++.+..+..++.++.  .+.+.+++++++|.+++|+|.+|...
T Consensus       223 gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~  268 (452)
T TIGR03452       223 KWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNGD  268 (452)
T ss_pred             CCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcCCC
Confidence            899999999999886544  34556777899999999999988653

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=98.04  E-value=1.5e-05  Score=77.32  Aligned_cols=97  Identities=26%  Similarity=0.313  Sum_probs=75.8

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhCC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKG   85 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (433)
                      .+++|||+|+.|+.+|..|+++|++   |++++....+..+      .+.       +        .....+.+.+++.+
T Consensus       137 ~~v~vvG~G~~gle~A~~~~~~G~~---v~l~e~~~~~~~~------~~~-------~--------~~~~~~~~~l~~~g  192 (415)
T COG0446         137 KDVVVVGAGPIGLEAAEAAAKRGKK---VTLIEAADRLGGQ------LLD-------P--------EVAEELAELLEKYG  192 (415)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCe---EEEEEcccccchh------hhh-------H--------HHHHHHHHHHHHCC
Confidence            6899999999999999999999987   9999999211110      000       0        01245677888899


Q ss_pred             cEEEeCceEEEEECCCCE-----EEeCCCcEEecceEEEccCCCcc
Q 013952           86 IELILSTEIVRADIASKT-----LLSATGLIFKYQILVIATGSTVL  126 (433)
Q Consensus        86 v~~~~~~~v~~i~~~~~~-----v~~~~~~~~~~d~lvlAtG~~~~  126 (433)
                      ++++.+..+..++...+.     +...++..+++|.+++++|.+|.
T Consensus       193 i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~  238 (415)
T COG0446         193 VELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPN  238 (415)
T ss_pred             cEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeeccccc
Confidence            999999999999876653     46677788999999999999885

>PTZ00052 thioredoxin reductase; Provisional

Probab=98.04  E-value=2.3e-05  Score=77.73  Aligned_cols=97  Identities=15%  Similarity=0.183  Sum_probs=71.9

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhCC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKG   85 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (433)
                      .+++|||||+.|+-.|..|++.|.+   |+++++. .+..  .+.         .           .....+.+.+++.|
T Consensus       183 ~~vvIIGgG~iG~E~A~~l~~~G~~---Vtli~~~-~~l~--~~d---------~-----------~~~~~l~~~l~~~G  236 (499)
T PTZ00052        183 GKTLIVGASYIGLETAGFLNELGFD---VTVAVRS-IPLR--GFD---------R-----------QCSEKVVEYMKEQG  236 (499)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCc---EEEEEcC-cccc--cCC---------H-----------HHHHHHHHHHHHcC
Confidence            5899999999999999999999876   9999765 1110  000         0           00134566778899


Q ss_pred             cEEEeCceEEEEECCCC--EEEeCCCcEEecceEEEccCCCcccc
Q 013952           86 IELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRL  128 (433)
Q Consensus        86 v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~~~  128 (433)
                      ++++.++.+..+...+.  .+.+.+++++.+|.+++|+|.+|...
T Consensus       237 V~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~  281 (499)
T PTZ00052        237 TLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPDIK  281 (499)
T ss_pred             CEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCCcc
Confidence            99999988887764332  45666788899999999999988654

>PRK12839 hypothetical protein; Provisional

Probab=98.04  E-value=0.0003  Score=70.78  Aligned_cols=65  Identities=22%  Similarity=0.254  Sum_probs=47.7

Q ss_pred             CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC--CCc-EE-ECCEEEEccc-CccChhhh
Q 013952          203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK--DGR-TL-EADIVVVGVG-GRPLISLF  267 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~--~g~-~i-~~d~vi~a~G-~~p~~~~~  267 (433)
                      +..+...+.+.+++.|++++.++.++++..++++++..|...  +++ .+ .++.||+|+| +.-|.++.
T Consensus       213 g~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~n~~~~  282 (572)
T PRK12839        213 GTALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFPNDVDRR  282 (572)
T ss_pred             HHHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCcccCHHHH
Confidence            556777788888999999999999999976456888887653  343 23 4589999998 44444443

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=98.04  E-value=0.0001  Score=73.18  Aligned_cols=137  Identities=24%  Similarity=0.283  Sum_probs=86.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCC------------------------------C----------
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL------------------------------F----------  202 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~------------------------------~----------  202 (433)
                      |+|+|||+|++|+-.+..|.+.|.+++++++.+.+..-.                              +          
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f~   81 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDFP   81 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSSE
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCCC
Confidence            699999999999999999999999999998764321000                              0          


Q ss_pred             -CHHHHHHHHHHHHhcCc--EEEcCCeEEEEEecCCC---cEEEEEeCC-C--cEEECCEEEEcccC--ccChhhh-hcc
Q 013952          203 -TADIAAFYEGYYANKGI--KIIKGTVAVGFTTNADG---EVKEVKLKD-G--RTLEADIVVVGVGG--RPLISLF-KGQ  270 (433)
Q Consensus       203 -~~~~~~~l~~~l~~~GV--~v~~~~~v~~i~~~~~g---~~~~v~~~~-g--~~i~~d~vi~a~G~--~p~~~~~-~~~  270 (433)
                       ..++.++++...+..++  .+.++++|.+++..++.   ....|.+.+ |  ++..+|.|++|+|.  .|+.... -.+
T Consensus        82 ~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~~~G  161 (531)
T PF00743_consen   82 SHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPSFPG  161 (531)
T ss_dssp             BHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB-----CT
T ss_pred             CHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhhhhh
Confidence             13788889998888877  58999999999874442   245676654 3  24568999999994  5654431 122


Q ss_pred             cccCCCcEEeCCCCCC----CCCCeEEcCcccc
Q 013952          271 VAENKGGIETDDFFKT----SADDVYAVGDVAT  299 (433)
Q Consensus       271 ~~~~~g~i~vd~~~~t----~~~~vfa~Gd~~~  299 (433)
                      ++.=+|.+.=...++.    ..++|-++|-..+
T Consensus       162 ~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~S  194 (531)
T PF00743_consen  162 LEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGNS  194 (531)
T ss_dssp             GGGHCSEEEEGGG--TGGGGTTSEEEEESSSHH
T ss_pred             hhcCCeeEEccccCcChhhcCCCEEEEEeCCHh
Confidence            3222344443333433    4577888886544

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.02  E-value=2.1e-05  Score=76.93  Aligned_cols=99  Identities=20%  Similarity=0.235  Sum_probs=71.4

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      ..+++|||+|+.|+-.|..|++.|.+   |+++++......+  .         ..           .....+.+.+++.
T Consensus       158 ~~~v~ViGgG~~g~E~A~~l~~~g~~---Vtli~~~~~~l~~--~---------~~-----------~~~~~l~~~l~~~  212 (441)
T PRK08010        158 PGHLGILGGGYIGVEFASMFANFGSK---VTILEAASLFLPR--E---------DR-----------DIADNIATILRDQ  212 (441)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCCCCCC--c---------CH-----------HHHHHHHHHHHhC
Confidence            35899999999999999999998876   9999887111100  0         00           0012345677889


Q ss_pred             CcEEEeCceEEEEECCCCEEEeC-CCcEEecceEEEccCCCcccc
Q 013952           85 GIELILSTEIVRADIASKTLLSA-TGLIFKYQILVIATGSTVLRL  128 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~~v~~~-~~~~~~~d~lvlAtG~~~~~~  128 (433)
                      |++++.++.+.+++.++..+.+. ++.++.+|.+++|+|.+|...
T Consensus       213 gV~v~~~~~v~~i~~~~~~v~v~~~~g~i~~D~vl~a~G~~pn~~  257 (441)
T PRK08010        213 GVDIILNAHVERISHHENQVQVHSEHAQLAVDALLIASGRQPATA  257 (441)
T ss_pred             CCEEEeCCEEEEEEEcCCEEEEEEcCCeEEeCEEEEeecCCcCCC
Confidence            99999999999998655544332 234689999999999988653

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=98.02  E-value=2.1e-05  Score=77.46  Aligned_cols=99  Identities=17%  Similarity=0.275  Sum_probs=70.7

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHc---CCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHH
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQ---GVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWY   81 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~---g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (433)
                      ..+++|||||+.|+-.|..+...   |.+   |+|+++......                  .+.    .+......+.+
T Consensus       187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~---Vtli~~~~~il~------------------~~d----~~~~~~l~~~L  241 (486)
T TIGR01423       187 PRRVLTVGGGFISVEFAGIFNAYKPRGGK---VTLCYRNNMILR------------------GFD----STLRKELTKQL  241 (486)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHhccCCCe---EEEEecCCcccc------------------ccC----HHHHHHHHHHH
Confidence            36899999999999999766554   655   999998711100                  000    00013456677


Q ss_pred             HhCCcEEEeCceEEEEECCC---CEEEeCCCcEEecceEEEccCCCcccc
Q 013952           82 KEKGIELILSTEIVRADIAS---KTLLSATGLIFKYQILVIATGSTVLRL  128 (433)
Q Consensus        82 ~~~~v~~~~~~~v~~i~~~~---~~v~~~~~~~~~~d~lvlAtG~~~~~~  128 (433)
                      ++.|++++.++.+..+....   ..+.+.++.++++|.+++|+|..|...
T Consensus       242 ~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~  291 (486)
T TIGR01423       242 RANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQ  291 (486)
T ss_pred             HHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCcc
Confidence            88999999999999887532   246666777899999999999988653

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.02  E-value=8.1e-05  Score=72.07  Aligned_cols=101  Identities=22%  Similarity=0.355  Sum_probs=75.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc----------cCCCC--CC---------------------------
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW----------CMPRL--FT---------------------------  203 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~----------~~~~~--~~---------------------------  203 (433)
                      ..|+|||+|+.|+-+|..|++.|.+|+++++.+.          ..++.  +.                           
T Consensus         3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~   82 (405)
T PRK05714          3 ADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSEM   82 (405)
T ss_pred             ccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCccceeE
Confidence            3699999999999999999999999999987641          00000  00                           


Q ss_pred             -----------------------------HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEE
Q 013952          204 -----------------------------ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIV  254 (433)
Q Consensus       204 -----------------------------~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~v  254 (433)
                                                   ..+.+.+.+.+++.|++++.++++.+++.++++  ..|.+.+|+++.+|.|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--v~v~~~~g~~~~a~~v  160 (405)
T PRK05714         83 QVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDD--WLLTLADGRQLRAPLV  160 (405)
T ss_pred             EEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCe--EEEEECCCCEEEeCEE
Confidence                                         022334455566779999999999999874333  4677888888999999


Q ss_pred             EEcccCccChh
Q 013952          255 VVGVGGRPLIS  265 (433)
Q Consensus       255 i~a~G~~p~~~  265 (433)
                      |.|.|......
T Consensus       161 VgAdG~~S~vR  171 (405)
T PRK05714        161 VAADGANSAVR  171 (405)
T ss_pred             EEecCCCchhH
Confidence            99999866543

>PRK13748 putative mercuric reductase; Provisional

Probab=98.01  E-value=2.5e-05  Score=78.97  Aligned_cols=97  Identities=19%  Similarity=0.267  Sum_probs=71.0

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      ..+++|||||+.|+-.|..|++.|.+   |+++++.. .+     .     .. ..           .....+.+.+++.
T Consensus       270 ~~~vvViGgG~ig~E~A~~l~~~g~~---Vtli~~~~-~l-----~-----~~-d~-----------~~~~~l~~~l~~~  323 (561)
T PRK13748        270 PERLAVIGSSVVALELAQAFARLGSK---VTILARST-LF-----F-----RE-DP-----------AIGEAVTAAFRAE  323 (561)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCE---EEEEecCc-cc-----c-----cc-CH-----------HHHHHHHHHHHHC
Confidence            36899999999999999999999876   99998761 00     0     00 00           0013456677889


Q ss_pred             CcEEEeCceEEEEECCCCEE--EeCCCcEEecceEEEccCCCcccc
Q 013952           85 GIELILSTEIVRADIASKTL--LSATGLIFKYQILVIATGSTVLRL  128 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~~v--~~~~~~~~~~d~lvlAtG~~~~~~  128 (433)
                      |++++.++.+..+..++..+  ...+ .++.+|.+++|+|..|+..
T Consensus       324 gI~i~~~~~v~~i~~~~~~~~v~~~~-~~i~~D~vi~a~G~~pn~~  368 (561)
T PRK13748        324 GIEVLEHTQASQVAHVDGEFVLTTGH-GELRADKLLVATGRAPNTR  368 (561)
T ss_pred             CCEEEcCCEEEEEEecCCEEEEEecC-CeEEeCEEEEccCCCcCCC
Confidence            99999999999887655443  3333 4699999999999988754

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=98.00  E-value=2.7e-05  Score=76.87  Aligned_cols=96  Identities=13%  Similarity=0.145  Sum_probs=69.6

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      .+++|||||+.|+-+|..|++.|.+   |+++++. ..+..    .         .           .......+.+++.
T Consensus       181 ~~vvIIGgG~iG~E~A~~l~~~G~~---Vtli~~~~~l~~~----d---------~-----------~~~~~l~~~L~~~  233 (484)
T TIGR01438       181 GKTLVVGASYVALECAGFLAGIGLD---VTVMVRSILLRGF----D---------Q-----------DCANKVGEHMEEH  233 (484)
T ss_pred             CCEEEECCCHHHHHHHHHHHHhCCc---EEEEEeccccccc----C---------H-----------HHHHHHHHHHHHc
Confidence            5799999999999999999999876   9999765 11100    0         0           0012345677889


Q ss_pred             CcEEEeCceEEEEECCCC--EEEeCCC---cEEecceEEEccCCCcccc
Q 013952           85 GIELILSTEIVRADIASK--TLLSATG---LIFKYQILVIATGSTVLRL  128 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~--~v~~~~~---~~~~~d~lvlAtG~~~~~~  128 (433)
                      |++++.++.+..+...+.  .+.+.++   +++++|.+++|+|..|...
T Consensus       234 gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~  282 (484)
T TIGR01438       234 GVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACTR  282 (484)
T ss_pred             CCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcCCC
Confidence            999999988877765433  3445444   3799999999999988653

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK14727 putative mercuric reductase; Provisional

Probab=98.00  E-value=2.7e-05  Score=76.94  Aligned_cols=96  Identities=18%  Similarity=0.261  Sum_probs=69.8

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhCC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKG   85 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (433)
                      .+++|||+|+.|+-.|..|++.|.+   |+++++.. ..     ..  .   . .           .....+.+.+++.|
T Consensus       189 k~vvVIGgG~iG~E~A~~l~~~G~~---Vtlv~~~~-~l-----~~--~---d-~-----------~~~~~l~~~L~~~G  242 (479)
T PRK14727        189 ASLTVIGSSVVAAEIAQAYARLGSR---VTILARST-LL-----FR--E---D-P-----------LLGETLTACFEKEG  242 (479)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCE---EEEEEcCC-CC-----Cc--c---h-H-----------HHHHHHHHHHHhCC
Confidence            5899999999999999999998876   99997651 00     00  0   0 0           00123456678899


Q ss_pred             cEEEeCceEEEEECCCCE--EEeCCCcEEecceEEEccCCCcccc
Q 013952           86 IELILSTEIVRADIASKT--LLSATGLIFKYQILVIATGSTVLRL  128 (433)
Q Consensus        86 v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d~lvlAtG~~~~~~  128 (433)
                      ++++.++.+..+...+..  +...+ .++.+|.+++|+|..|+..
T Consensus       243 V~i~~~~~V~~i~~~~~~~~v~~~~-g~i~aD~VlvA~G~~pn~~  286 (479)
T PRK14727        243 IEVLNNTQASLVEHDDNGFVLTTGH-GELRAEKLLISTGRHANTH  286 (479)
T ss_pred             CEEEcCcEEEEEEEeCCEEEEEEcC-CeEEeCEEEEccCCCCCcc
Confidence            999999999888755443  33333 4699999999999988654

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=98.00  E-value=2.3e-05  Score=77.04  Aligned_cols=92  Identities=20%  Similarity=0.235  Sum_probs=70.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC-------CC-CCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT  232 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~-------~~-~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~  232 (433)
                      .+++++|||+|+.|+.+|..|++.|.+|+++++.+.+.       +. .++.++.+...+.+++.|++++.++.+...  
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~--  217 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRD--  217 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCc--
Confidence            46799999999999999999999999999998776431       11 146677777788899999999999876321  


Q ss_pred             cCCCcEEEEEeCCCcEEECCEEEEcccCccC
Q 013952          233 NADGEVKEVKLKDGRTLEADIVVVGVGGRPL  263 (433)
Q Consensus       233 ~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~  263 (433)
                              +...+ ....+|.||+|+|..+.
T Consensus       218 --------~~~~~-~~~~~D~vilAtGa~~~  239 (467)
T TIGR01318       218 --------ISLDD-LLEDYDAVFLGVGTYRS  239 (467)
T ss_pred             --------cCHHH-HHhcCCEEEEEeCCCCC
Confidence                    11111 12469999999998764

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK12831 putative oxidoreductase; Provisional

Probab=97.98  E-value=2e-05  Score=77.33  Aligned_cols=94  Identities=22%  Similarity=0.244  Sum_probs=68.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC-------CCC-CCH-HHHHHHHHHHHhcCcEEEcCCeEEEEE
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PRL-FTA-DIAAFYEGYYANKGIKIIKGTVAVGFT  231 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~-------~~~-~~~-~~~~~l~~~l~~~GV~v~~~~~v~~i~  231 (433)
                      .+++++|||+|+.|+.+|..|++.|.+|+++++.+.+.       +.+ ++. ++.....+.+++.||++++++.+..  
T Consensus       139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~~gv~i~~~~~v~~--  216 (464)
T PRK12831        139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKKLGVKIETNVVVGK--  216 (464)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeecCCCccCCccHHHHHHHHHHHHcCCEEEcCCEECC--
Confidence            47899999999999999999999999999998755321       111 223 3666677788999999999986521  


Q ss_pred             ecCCCcEEEEEeCCC-cEEECCEEEEcccC-ccCh
Q 013952          232 TNADGEVKEVKLKDG-RTLEADIVVVGVGG-RPLI  264 (433)
Q Consensus       232 ~~~~g~~~~v~~~~g-~~i~~d~vi~a~G~-~p~~  264 (433)
                              .+.+.+. +.+.+|.||+|+|. +|..
T Consensus       217 --------~v~~~~~~~~~~~d~viiAtGa~~~~~  243 (464)
T PRK12831        217 --------TVTIDELLEEEGFDAVFIGSGAGLPKF  243 (464)
T ss_pred             --------cCCHHHHHhccCCCEEEEeCCCCCCCC
Confidence                    1222222 24569999999997 4643

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=97.98  E-value=0.00011  Score=70.64  Aligned_cols=98  Identities=22%  Similarity=0.338  Sum_probs=73.2

Q ss_pred             cEEEECCCHHHHHHHHHHHhCC-CeEEEEccCCccCCC--------CC--------------------------------
Q 013952          164 KAVVVGGGYIGLELSAALKINN-IDVSMVYPEPWCMPR--------LF--------------------------------  202 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g-~~V~li~~~~~~~~~--------~~--------------------------------  202 (433)
                      .|+|||+|+.|+-+|..|++.| .+|+++++.+...+.        .+                                
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~   80 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ   80 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence            3799999999999999999999 999999875322110        00                                


Q ss_pred             -----------------------CHHHHHHHHHHHHh-cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcc
Q 013952          203 -----------------------TADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGV  258 (433)
Q Consensus       203 -----------------------~~~~~~~l~~~l~~-~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~  258 (433)
                                             ..++.+.+.+.+++ .|++++++++++++..++++  ..+.+.+|+++.+|.||.|.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~--~~v~~~~g~~~~ad~vV~Ad  158 (382)
T TIGR01984        81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDY--VRVTLDNGQQLRAKLLIAAD  158 (382)
T ss_pred             CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCe--EEEEECCCCEEEeeEEEEec
Confidence                                   01234445555666 49999999999999863333  46777888889999999999


Q ss_pred             cCccC
Q 013952          259 GGRPL  263 (433)
Q Consensus       259 G~~p~  263 (433)
                      |....
T Consensus       159 G~~S~  163 (382)
T TIGR01984       159 GANSK  163 (382)
T ss_pred             CCChH
Confidence            97653

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK06184 hypothetical protein; Provisional

Probab=97.98  E-value=0.0001  Score=73.37  Aligned_cols=99  Identities=24%  Similarity=0.372  Sum_probs=73.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCC-----------------------------------------
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL-----------------------------------------  201 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~-----------------------------------------  201 (433)
                      -.|+|||+|+.|+-+|..|++.|.+|+++++.+.+....                                         
T Consensus         4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~   83 (502)
T PRK06184          4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDGSV   83 (502)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCceE
Confidence            479999999999999999999999999998753221000                                         


Q ss_pred             ----------------------CC-HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCcEEECCEEE
Q 013952          202 ----------------------FT-ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGRTLEADIVV  255 (433)
Q Consensus       202 ----------------------~~-~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~---~~g~~i~~d~vi  255 (433)
                                            ++ ..+.+.+.+.+++.|+++++++++.+++.++++  ..+.+   .+++++.+|.||
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~--v~v~~~~~~~~~~i~a~~vV  161 (502)
T PRK06184         84 AESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADG--VTARVAGPAGEETVRARYLV  161 (502)
T ss_pred             EEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCc--EEEEEEeCCCeEEEEeCEEE
Confidence                                  00 123345666777789999999999999874444  33444   456789999999


Q ss_pred             EcccCccC
Q 013952          256 VGVGGRPL  263 (433)
Q Consensus       256 ~a~G~~p~  263 (433)
                      .|.|.+..
T Consensus       162 gADG~~S~  169 (502)
T PRK06184        162 GADGGRSF  169 (502)
T ss_pred             ECCCCchH
Confidence            99997653

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=97.97  E-value=2.9e-05  Score=76.52  Aligned_cols=98  Identities=11%  Similarity=0.161  Sum_probs=70.1

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      ..+++|||+|+.|+..|..|++.|.+   |+++++......                  .+.    ......+.+.+++.
T Consensus       169 ~k~v~VIGgG~~g~E~A~~l~~~g~~---Vtli~~~~~~l~------------------~~d----~~~~~~~~~~l~~~  223 (460)
T PRK06292        169 PKSLAVIGGGVIGLELGQALSRLGVK---VTVFERGDRILP------------------LED----PEVSKQAQKILSKE  223 (460)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCc---EEEEecCCCcCc------------------chh----HHHHHHHHHHHhhc
Confidence            36899999999999999999999877   999988711110                  000    00012345566777


Q ss_pred             CcEEEeCceEEEEECCCC-EEEe--C--CCcEEecceEEEccCCCcccc
Q 013952           85 GIELILSTEIVRADIASK-TLLS--A--TGLIFKYQILVIATGSTVLRL  128 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~-~v~~--~--~~~~~~~d~lvlAtG~~~~~~  128 (433)
                       ++++.++.+..++..++ .+.+  .  ++.++++|.+++|+|..|...
T Consensus       224 -I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~  271 (460)
T PRK06292        224 -FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNTD  271 (460)
T ss_pred             -cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccCCC
Confidence             99999999999876543 3432  2  235799999999999988765

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=97.97  E-value=2.8e-05  Score=73.05  Aligned_cols=101  Identities=18%  Similarity=0.263  Sum_probs=79.0

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      ...|+++|+|..|+-+|..|+..+.+   |++|.++..+..+      ++               +....+...+++++.
T Consensus       213 ~~~vV~vG~G~ig~Evaa~l~~~~~~---VT~V~~e~~~~~~------lf---------------~~~i~~~~~~y~e~k  268 (478)
T KOG1336|consen  213 GGKVVCVGGGFIGMEVAAALVSKAKS---VTVVFPEPWLLPR------LF---------------GPSIGQFYEDYYENK  268 (478)
T ss_pred             CceEEEECchHHHHHHHHHHHhcCce---EEEEccCccchhh------hh---------------hHHHHHHHHHHHHhc
Confidence            45799999999999999999998766   9999999322211      11               112234567888999


Q ss_pred             CcEEEeCceEEEEECCC--C--EEEeCCCcEEecceEEEccCCCccccC
Q 013952           85 GIELILSTEIVRADIAS--K--TLLSATGLIFKYQILVIATGSTVLRLT  129 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~--~--~v~~~~~~~~~~d~lvlAtG~~~~~~~  129 (433)
                      +++++.++.+.+++...  +  .|.+.++.++.+|.||+.+|++|....
T Consensus       269 gVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~  317 (478)
T KOG1336|consen  269 GVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNTSF  317 (478)
T ss_pred             CeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeecccccccc
Confidence            99999998888876544  2  467889999999999999999998765

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=97.97  E-value=0.00014  Score=70.86  Aligned_cols=98  Identities=22%  Similarity=0.320  Sum_probs=72.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC------------------CCC-----C-----------------
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM------------------PRL-----F-----------------  202 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~------------------~~~-----~-----------------  202 (433)
                      -.|+|||+|+.|+-+|..|++.|.+|.++++.+.+.                  +.+     .                 
T Consensus         6 ~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (428)
T PRK10157          6 FDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKSA   85 (428)
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcCCCc
Confidence            479999999999999999999999999998753210                  000     0                 


Q ss_pred             ---------------------CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013952          203 ---------------------TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR  261 (433)
Q Consensus       203 ---------------------~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~  261 (433)
                                           ..++.+.+.+.+++.|++++.+++|.++.. +++.+..+. .++.++.||.||.|.|..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~-~~g~v~~v~-~~g~~i~A~~VI~A~G~~  163 (428)
T PRK10157         86 MTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQ-RDGKVVGVE-ADGDVIEAKTVILADGVN  163 (428)
T ss_pred             eeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEE-eCCEEEEEE-cCCcEEECCEEEEEeCCC
Confidence                                 012234566677788999999999999876 345554444 456689999999999974


Q ss_pred             c
Q 013952          262 P  262 (433)
Q Consensus       262 p  262 (433)
                      .
T Consensus       164 s  164 (428)
T PRK10157        164 S  164 (428)
T ss_pred             H
Confidence            3

>PRK07588 hypothetical protein; Provisional

Probab=97.97  E-value=0.00012  Score=70.59  Aligned_cols=99  Identities=18%  Similarity=0.218  Sum_probs=72.0

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCC------------------------------------------
Q 013952          164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL------------------------------------------  201 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~------------------------------------------  201 (433)
                      +|+|||+|+.|+-+|..|++.|.+|+++++.+......                                          
T Consensus         2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~~   81 (391)
T PRK07588          2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRRK   81 (391)
T ss_pred             eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCEE
Confidence            68999999999999999999999999998664321100                                          


Q ss_pred             --CC-----------------HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013952          202 --FT-----------------ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP  262 (433)
Q Consensus       202 --~~-----------------~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p  262 (433)
                        ++                 .++.+.+.+.+ ..|++++++++|.+++..+++  ..+.+.+|+.+++|.||-|-|.+.
T Consensus        82 ~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~-~~~v~i~~~~~v~~i~~~~~~--v~v~~~~g~~~~~d~vIgADG~~S  158 (391)
T PRK07588         82 ADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAI-DGQVETIFDDSIATIDEHRDG--VRVTFERGTPRDFDLVIGADGLHS  158 (391)
T ss_pred             EEecHHHccccCCCceEEEEHHHHHHHHHHhh-hcCeEEEeCCEEeEEEECCCe--EEEEECCCCEEEeCEEEECCCCCc
Confidence              00                 01222222223 347999999999999873332  468888998899999999999766


Q ss_pred             Chh
Q 013952          263 LIS  265 (433)
Q Consensus       263 ~~~  265 (433)
                      ...
T Consensus       159 ~vR  161 (391)
T PRK07588        159 HVR  161 (391)
T ss_pred             cch
Confidence            553

>PRK05868 hypothetical protein; Validated

Probab=97.96  E-value=8.5e-05  Score=70.94  Aligned_cols=101  Identities=16%  Similarity=0.150  Sum_probs=72.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCC----CCH-------------H--------------------
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL----FTA-------------D--------------------  205 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~----~~~-------------~--------------------  205 (433)
                      ++|+|||+|+.|+.+|..|++.|.+|+++++.+.+....    +.+             .                    
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~   81 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGNE   81 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCCE
Confidence            479999999999999999999999999998764321100    000             0                    


Q ss_pred             ---------------------HHHHHHHHHH---hcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013952          206 ---------------------IAAFYEGYYA---NKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR  261 (433)
Q Consensus       206 ---------------------~~~~l~~~l~---~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~  261 (433)
                                           ....+.+.+.   ..|+++++++++++++.+  +....+.+.+|+++++|+||-|-|.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~--~~~v~v~~~dg~~~~adlvIgADG~~  159 (372)
T PRK05868         82 LFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDD--GDSVRVTFERAAAREFDLVIGADGLH  159 (372)
T ss_pred             EeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEec--CCeEEEEECCCCeEEeCEEEECCCCC
Confidence                                 0112223322   358999999999999763  33356888999899999999999977


Q ss_pred             cChh
Q 013952          262 PLIS  265 (433)
Q Consensus       262 p~~~  265 (433)
                      ....
T Consensus       160 S~vR  163 (372)
T PRK05868        160 SNVR  163 (372)
T ss_pred             chHH
Confidence            6553

>PLN02852 ferredoxin-NADP+ reductase

Probab=97.96  E-value=2.9e-05  Score=75.79  Aligned_cols=91  Identities=16%  Similarity=0.195  Sum_probs=66.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHh--CCCeEEEEccCCccC--------CCC-CCHHHHHHHHHHHHhcCcEEEcCCeEEE
Q 013952          161 KNGKAVVVGGGYIGLELSAALKI--NNIDVSMVYPEPWCM--------PRL-FTADIAAFYEGYYANKGIKIIKGTVAVG  229 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~--~g~~V~li~~~~~~~--------~~~-~~~~~~~~l~~~l~~~GV~v~~~~~v~~  229 (433)
                      .+++|+|||+|+.|+.+|..|.+  .|.+|+++++.+.+.        +.. ....+...+.+.+++.+|+++.+..+..
T Consensus        25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv~vg~  104 (491)
T PLN02852         25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVTLGR  104 (491)
T ss_pred             CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCEEECc
Confidence            46899999999999999999987  799999999887543        110 1234555667778888999998765421


Q ss_pred             EEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013952          230 FTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP  262 (433)
Q Consensus       230 i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p  262 (433)
                                .+.+.+- ...+|.||+|+|..+
T Consensus       105 ----------dvtl~~L-~~~yDaVIlAtGa~~  126 (491)
T PLN02852        105 ----------DVSLSEL-RDLYHVVVLAYGAES  126 (491)
T ss_pred             ----------cccHHHH-hhhCCEEEEecCCCC
Confidence                      1233332 246999999999865

>PTZ00058 glutathione reductase; Provisional

Probab=97.96  E-value=3.6e-05  Score=76.81  Aligned_cols=99  Identities=14%  Similarity=0.133  Sum_probs=70.9

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      ..+++|||||+.|+-.|..+++.|.+   |+++++.....                  +.+.    .+....+.+.+++.
T Consensus       237 pk~VvIIGgG~iGlE~A~~l~~~G~~---Vtli~~~~~il------------------~~~d----~~i~~~l~~~L~~~  291 (561)
T PTZ00058        237 AKRIGIAGSGYIAVELINVVNRLGAE---SYIFARGNRLL------------------RKFD----ETIINELENDMKKN  291 (561)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCc---EEEEEeccccc------------------ccCC----HHHHHHHHHHHHHC
Confidence            46899999999999999999999877   99999871100                  0000    00012345667788


Q ss_pred             CcEEEeCceEEEEECCCC---EEEeCCC-cEEecceEEEccCCCcccc
Q 013952           85 GIELILSTEIVRADIASK---TLLSATG-LIFKYQILVIATGSTVLRL  128 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~---~v~~~~~-~~~~~d~lvlAtG~~~~~~  128 (433)
                      |++++.+..+..++..+.   .+...++ +++++|.+++|+|..|...
T Consensus       292 GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~  339 (561)
T PTZ00058        292 NINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTE  339 (561)
T ss_pred             CCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCCcc
Confidence            999999999998875432   2333343 5799999999999887643

>PRK09126 hypothetical protein; Provisional

Probab=97.94  E-value=0.00018  Score=69.37  Aligned_cols=101  Identities=27%  Similarity=0.408  Sum_probs=73.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC-------CC--------------------C--------------
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PR--------------------L--------------  201 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~-------~~--------------------~--------------  201 (433)
                      -.|+|||+|+.|+-+|..|++.|.+|+++++.+...       ..                    .              
T Consensus         4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~   83 (392)
T PRK09126          4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAKVL   83 (392)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEEEE
Confidence            379999999999999999999999999998764310       00                    0              


Q ss_pred             ---------CC---------------HHHHHHHHHHH-HhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEE
Q 013952          202 ---------FT---------------ADIAAFYEGYY-ANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVV  256 (433)
Q Consensus       202 ---------~~---------------~~~~~~l~~~l-~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~  256 (433)
                               ++               ..+.+.+.+.+ +..|+++++++++.+++.++++  ..|.+++|+++.+|.||.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~--~~v~~~~g~~~~a~~vI~  161 (392)
T PRK09126         84 NGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDG--AQVTLANGRRLTARLLVA  161 (392)
T ss_pred             cCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCe--EEEEEcCCCEEEeCEEEE
Confidence                     00               01222233333 3468999999999999863332  467788888999999999


Q ss_pred             cccCccChh
Q 013952          257 GVGGRPLIS  265 (433)
Q Consensus       257 a~G~~p~~~  265 (433)
                      |.|..+...
T Consensus       162 AdG~~S~vr  170 (392)
T PRK09126        162 ADSRFSATR  170 (392)
T ss_pred             eCCCCchhh
Confidence            999876654

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=97.93  E-value=3.4e-05  Score=76.17  Aligned_cols=90  Identities=23%  Similarity=0.242  Sum_probs=68.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC-------CC-CCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT  232 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~-------~~-~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~  232 (433)
                      .+++++|||+|+.|+.+|..|++.|.+|+++++.+.+.       +. .++.++.....+.+++.||++++++.+..- .
T Consensus       142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~-~  220 (485)
T TIGR01317       142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGVD-I  220 (485)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEECCCEeCCc-c
Confidence            35799999999999999999999999999998876531       11 135677777778889999999999876411 0


Q ss_pred             cCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013952          233 NADGEVKEVKLKDGRTLEADIVVVGVGGR  261 (433)
Q Consensus       233 ~~~g~~~~v~~~~g~~i~~d~vi~a~G~~  261 (433)
                               .. ++....+|.|++|+|..
T Consensus       221 ---------~~-~~~~~~~d~VilAtGa~  239 (485)
T TIGR01317       221 ---------SA-DELKEQFDAVVLAGGAT  239 (485)
T ss_pred             ---------CH-HHHHhhCCEEEEccCCC
Confidence                     00 11235699999999987

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=97.91  E-value=1.7e-05  Score=78.84  Aligned_cols=58  Identities=24%  Similarity=0.319  Sum_probs=44.2

Q ss_pred             CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCC---Cc--EEECCEEEEcccCcc
Q 013952          203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD---GR--TLEADIVVVGVGGRP  262 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~---g~--~i~~d~vi~a~G~~p  262 (433)
                      +..+...+.+..++.|++++.+++|.++..  ++....+.+.+   |+  ++.++.||.|+|...
T Consensus       154 ~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~--~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa  216 (508)
T PRK12266        154 DARLVVLNARDAAERGAEILTRTRVVSARR--ENGLWHVTLEDTATGKRYTVRARALVNAAGPWV  216 (508)
T ss_pred             HHHHHHHHHHHHHHcCCEEEcCcEEEEEEE--eCCEEEEEEEEcCCCCEEEEEcCEEEECCCccH
Confidence            566777777778899999999999999976  23334555543   43  689999999999754

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=97.91  E-value=0.00019  Score=69.14  Aligned_cols=99  Identities=26%  Similarity=0.365  Sum_probs=74.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCC--C-------C-------------------------------
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR--L-------F-------------------------------  202 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~--~-------~-------------------------------  202 (433)
                      ..|+|||+|+.|+-+|..|++.|.+|+++++.+.....  .       +                               
T Consensus         6 ~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~   85 (388)
T PRK07608          6 FDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMRVF   85 (388)
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEEEE
Confidence            47999999999999999999999999999876442110  0       0                               


Q ss_pred             ------------------------CHHHHHHHHHHHHhcC-cEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEc
Q 013952          203 ------------------------TADIAAFYEGYYANKG-IKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVG  257 (433)
Q Consensus       203 ------------------------~~~~~~~l~~~l~~~G-V~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a  257 (433)
                                              ...+.+.+.+.+++.| ++++ +++++++...+++  ..+.+.+|.++.+|.+|.|
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~--~~v~~~~g~~~~a~~vI~a  162 (388)
T PRK07608         86 GDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDA--ATLTLADGQVLRADLVVGA  162 (388)
T ss_pred             ECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCe--EEEEECCCCEEEeeEEEEe
Confidence                                    1123445556667777 9998 8899998763333  4688888888999999999


Q ss_pred             ccCccCh
Q 013952          258 VGGRPLI  264 (433)
Q Consensus       258 ~G~~p~~  264 (433)
                      .|.....
T Consensus       163 dG~~S~v  169 (388)
T PRK07608        163 DGAHSWV  169 (388)
T ss_pred             CCCCchH
Confidence            9986543

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=97.91  E-value=0.00019  Score=69.02  Aligned_cols=99  Identities=21%  Similarity=0.358  Sum_probs=74.0

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC-------C--CCC-------------------------------
Q 013952          164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP-------R--LFT-------------------------------  203 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~-------~--~~~-------------------------------  203 (433)
                      .|+|||+|+.|+-+|..|++.|.+|+++++.+....       +  .+.                               
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~   80 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD   80 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence            389999999999999999999999999987743100       0  000                               


Q ss_pred             -------------------------HHHHHHHHHHHHhcC-cEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEc
Q 013952          204 -------------------------ADIAAFYEGYYANKG-IKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVG  257 (433)
Q Consensus       204 -------------------------~~~~~~l~~~l~~~G-V~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a  257 (433)
                                               .++.+.+.+.+++.| ++++++++|++++.++ +. ..+.+.+|+++.+|.||.|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~-~~-~~v~~~~g~~~~~~~vi~a  158 (385)
T TIGR01988        81 GGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHS-DH-VELTLDDGQQLRARLLVGA  158 (385)
T ss_pred             CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecC-Ce-eEEEECCCCEEEeeEEEEe
Confidence                                     123344555666667 9999999999998733 32 4678888989999999999


Q ss_pred             ccCccCh
Q 013952          258 VGGRPLI  264 (433)
Q Consensus       258 ~G~~p~~  264 (433)
                      .|.....
T Consensus       159 dG~~S~v  165 (385)
T TIGR01988       159 DGANSKV  165 (385)
T ss_pred             CCCCCHH
Confidence            9976543

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PLN02697 lycopene epsilon cyclase

Probab=97.91  E-value=0.00017  Score=71.31  Aligned_cols=98  Identities=18%  Similarity=0.219  Sum_probs=71.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCC-----------------------------------------
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL-----------------------------------------  201 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~-----------------------------------------  201 (433)
                      -.|+|||+|+.|+.+|..+++.|.+|.++++...+....                                         
T Consensus       109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Yg~  188 (529)
T PLN02697        109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAYGR  188 (529)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCcccE
Confidence            479999999999999999999999999998642221110                                         


Q ss_pred             -CCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013952          202 -FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP  262 (433)
Q Consensus       202 -~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p  262 (433)
                       ....+.+.+.+.+.+.|+++ .+++|+++...+ +....+.+.+|.++.++.||.|+|..+
T Consensus       189 V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~-~~~~vv~~~dG~~i~A~lVI~AdG~~S  248 (529)
T PLN02697        189 VSRTLLHEELLRRCVESGVSY-LSSKVDRITEAS-DGLRLVACEDGRVIPCRLATVASGAAS  248 (529)
T ss_pred             EcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcC-CcEEEEEEcCCcEEECCEEEECCCcCh
Confidence             00133455666667789998 577899987633 333334567788899999999999766

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=97.91  E-value=3.2e-05  Score=74.70  Aligned_cols=120  Identities=21%  Similarity=0.167  Sum_probs=83.9

Q ss_pred             CCcEEecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCe
Q 013952          108 TGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNID  187 (433)
Q Consensus       108 ~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~  187 (433)
                      .+..+.++.|..+.|........  +++. .+...                  .+++|+|||+|+.|+.+|..|++.|+.
T Consensus        90 ~~~~v~i~~le~~i~d~~~~~g~--i~~~-~~~~~------------------tg~~VaviGaGPAGl~~a~~L~~~G~~  148 (457)
T COG0493          90 EELPVNIGALERAIGDKADREGW--IPGE-LPGSR------------------TGKKVAVIGAGPAGLAAADDLSRAGHD  148 (457)
T ss_pred             CCCchhhhhHHHHHhhHHHHhCC--CCCC-CCCCC------------------CCCEEEEECCCchHhhhHHHHHhCCCe
Confidence            44567888888888765432211  2221 11111                  368999999999999999999999999


Q ss_pred             EEEEccCCccC-------C-CCCCHHHHHHHHHHHHhcCcEEEcCCeEE-EEEecCCCcEEEEEeCCCcEEECCEEEEcc
Q 013952          188 VSMVYPEPWCM-------P-RLFTADIAAFYEGYYANKGIKIIKGTVAV-GFTTNADGEVKEVKLKDGRTLEADIVVVGV  258 (433)
Q Consensus       188 V~li~~~~~~~-------~-~~~~~~~~~~l~~~l~~~GV~v~~~~~v~-~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~  258 (433)
                      |+++++.+...       | ..++.++.+...+.|++.|++|+.++++- .+.           ++. ..-+.|.|++++
T Consensus       149 Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~~it-----------~~~-L~~e~Dav~l~~  216 (457)
T COG0493         149 VTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGRDIT-----------LEE-LLKEYDAVFLAT  216 (457)
T ss_pred             EEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECCcCC-----------HHH-HHHhhCEEEEec
Confidence            99998876532       1 11467899999999999999999998764 221           111 112349999999


Q ss_pred             cC
Q 013952          259 GG  260 (433)
Q Consensus       259 G~  260 (433)
                      |.
T Consensus       217 G~  218 (457)
T COG0493         217 GA  218 (457)
T ss_pred             cc
Confidence            94

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=97.91  E-value=0.00016  Score=70.67  Aligned_cols=66  Identities=12%  Similarity=0.103  Sum_probs=51.3

Q ss_pred             CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecC-CCcEEEEEeCC-CcEEECCEEEEccc-CccChhhhh
Q 013952          203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNA-DGEVKEVKLKD-GRTLEADIVVVGVG-GRPLISLFK  268 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~-~g~~~~v~~~~-g~~i~~d~vi~a~G-~~p~~~~~~  268 (433)
                      ...+.+.+.+.+++.|++++++++++++..++ ++++..+...+ +..+.++.||+|+| +..|.+++.
T Consensus       122 g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~n~~~~~  190 (432)
T TIGR02485       122 GKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGANRDWLR  190 (432)
T ss_pred             HHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcccCHHHHH
Confidence            45678888889999999999999999998743 56677666543 35799999999999 555555543

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>PLN02568 polyamine oxidase

Probab=97.90  E-value=1.3e-05  Score=79.70  Aligned_cols=40  Identities=25%  Similarity=0.328  Sum_probs=34.3

Q ss_pred             CCCCcCeEEEECCCHHHHHHHHHHHHcCC--CCCcEEEEcCC
Q 013952            1 MAEKSFKYVILGGGVSAGYAAREFAKQGV--KPGELAIISKE   40 (433)
Q Consensus         1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g~--~~~~V~lie~~   40 (433)
                      ||++.+||+|||||++||+||.+|++.|.  +..+|+|+|++
T Consensus         1 ~~~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~   42 (539)
T PLN02568          1 MVAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGG   42 (539)
T ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCC
Confidence            88888999999999999999999999871  11239999998

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=97.90  E-value=3.5e-05  Score=80.38  Aligned_cols=94  Identities=16%  Similarity=0.202  Sum_probs=70.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC-------CC-CCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT  232 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~-------~~-~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~  232 (433)
                      .+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.       +. -++.++.+...+.+++.||+++.++.+..   
T Consensus       430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v~~---  506 (752)
T PRK12778        430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFETDVIVGK---  506 (752)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHCCCEEECCCEECC---
Confidence            46799999999999999999999999999998754321       11 13567777777788999999999875421   


Q ss_pred             cCCCcEEEEEeCCCcEEECCEEEEcccC-ccCh
Q 013952          233 NADGEVKEVKLKDGRTLEADIVVVGVGG-RPLI  264 (433)
Q Consensus       233 ~~~g~~~~v~~~~g~~i~~d~vi~a~G~-~p~~  264 (433)
                             .+.+.+.....+|.||+|+|. .|..
T Consensus       507 -------~v~~~~l~~~~ydavvlAtGa~~~~~  532 (752)
T PRK12778        507 -------TITIEELEEEGFKGIFIASGAGLPNF  532 (752)
T ss_pred             -------cCCHHHHhhcCCCEEEEeCCCCCCCC
Confidence                   123333334669999999997 4653

>PRK07190 hypothetical protein; Provisional

Probab=97.90  E-value=0.00018  Score=71.00  Aligned_cols=100  Identities=16%  Similarity=0.309  Sum_probs=74.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC----------------------------------------CC-
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP----------------------------------------RL-  201 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~----------------------------------------~~-  201 (433)
                      ..|+|||+|++|+-+|..|++.|.+|.++++.+....                                        .. 
T Consensus         6 ~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g~~i   85 (487)
T PRK07190          6 TDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANGKFI   85 (487)
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCCceE
Confidence            4799999999999999999999999999886532100                                        00 


Q ss_pred             ---------CC------------HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013952          202 ---------FT------------ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG  260 (433)
Q Consensus       202 ---------~~------------~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~  260 (433)
                               ..            ..+.+.+.+.+++.|++++.+++++++..++++  ..+.+.+|+++.|+.||.|.|.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~--v~v~~~~g~~v~a~~vVgADG~  163 (487)
T PRK07190         86 SRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAG--CLTTLSNGERIQSRYVIGADGS  163 (487)
T ss_pred             eeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCe--eEEEECCCcEEEeCEEEECCCC
Confidence                     00            112334555677889999999999999874444  3455677788999999999997


Q ss_pred             ccCh
Q 013952          261 RPLI  264 (433)
Q Consensus       261 ~p~~  264 (433)
                      +...
T Consensus       164 ~S~v  167 (487)
T PRK07190        164 RSFV  167 (487)
T ss_pred             CHHH
Confidence            6533

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=97.89  E-value=0.00014  Score=68.88  Aligned_cols=102  Identities=28%  Similarity=0.378  Sum_probs=72.7

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCC------------------------------------------
Q 013952          164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL------------------------------------------  201 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~------------------------------------------  201 (433)
                      .|+|||+|+.|+-+|..|++.|.+|+++++.+.+....                                          
T Consensus         3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~~   82 (356)
T PF01494_consen    3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGISD   82 (356)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEETTT
T ss_pred             eEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecccCC
Confidence            68999999999999999999999999998864321100                                          


Q ss_pred             --------------------------CCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC-CC--cEEECC
Q 013952          202 --------------------------FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK-DG--RTLEAD  252 (433)
Q Consensus       202 --------------------------~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~-~g--~~i~~d  252 (433)
                                                ....+.+.+.+.+++.|+++++++++..+..+.++....+... +|  +++++|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~ad  162 (356)
T PF01494_consen   83 SRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEAD  162 (356)
T ss_dssp             SEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEES
T ss_pred             ccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEe
Confidence                                      0024566777788888999999999999987444433333333 34  368999


Q ss_pred             EEEEcccCccChh
Q 013952          253 IVVVGVGGRPLIS  265 (433)
Q Consensus       253 ~vi~a~G~~p~~~  265 (433)
                      +||-|-|.+....
T Consensus       163 lvVgADG~~S~vR  175 (356)
T PF01494_consen  163 LVVGADGAHSKVR  175 (356)
T ss_dssp             EEEE-SGTT-HHH
T ss_pred             eeecccCcccchh
Confidence            9999999876543

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=97.89  E-value=0.00049  Score=75.04  Aligned_cols=33  Identities=30%  Similarity=0.532  Sum_probs=31.5

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      .+||||||+|.||++||.++++.|.+   |+|+||.
T Consensus       409 ~~DVvVVG~G~AGl~AAi~Aae~Ga~---VivlEK~  441 (1167)
T PTZ00306        409 PARVIVVGGGLAGCSAAIEAASCGAQ---VILLEKE  441 (1167)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCc---EEEEEcc
Confidence            58999999999999999999999987   9999999

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=97.87  E-value=0.0004  Score=67.61  Aligned_cols=137  Identities=26%  Similarity=0.306  Sum_probs=90.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCe-EEEEccCCccCCC-----------------------CC--------CHHHHHH
Q 013952          162 NGKAVVVGGGYIGLELSAALKINNID-VSMVYPEPWCMPR-----------------------LF--------TADIAAF  209 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g~~-V~li~~~~~~~~~-----------------------~~--------~~~~~~~  209 (433)
                      -.+|+|||+|++|+-+|..|.+.|.. +.++++.+.+...                       .+        -.++.+.
T Consensus         8 ~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~y   87 (443)
T COG2072           8 HTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIKDY   87 (443)
T ss_pred             cccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHHHH
Confidence            35899999999999999999999988 9998876432100                       01        0126777


Q ss_pred             HHHHHHhcCcE--EEcCCeEEEEEecCCCcEEEEEeCCCcE--EECCEEEEcccC--ccChhhhhcccccCCCcEEeC--
Q 013952          210 YEGYYANKGIK--IIKGTVAVGFTTNADGEVKEVKLKDGRT--LEADIVVVGVGG--RPLISLFKGQVAENKGGIETD--  281 (433)
Q Consensus       210 l~~~l~~~GV~--v~~~~~v~~i~~~~~g~~~~v~~~~g~~--i~~d~vi~a~G~--~p~~~~~~~~~~~~~g~i~vd--  281 (433)
                      +...+++.++.  +..++.|..+..++++....|.++++..  +.+|.||+|||.  .|+..-+. +.+.-.|.+.=-  
T Consensus        88 ~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~-G~~~f~g~~~HS~~  166 (443)
T COG2072          88 IKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFA-GLDEFKGRILHSAD  166 (443)
T ss_pred             HHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCC-CccCCCceEEchhc
Confidence            78888877654  4556677777776777788999988865  559999999995  44443322 111112222211  


Q ss_pred             --CCCCCCCCCeEEcCcccc
Q 013952          282 --DFFKTSADDVYAVGDVAT  299 (433)
Q Consensus       282 --~~~~t~~~~vfa~Gd~~~  299 (433)
                        +...-.-++|-++|--++
T Consensus       167 ~~~~~~~~GKrV~VIG~GaS  186 (443)
T COG2072         167 WPNPEDLRGKRVLVIGAGAS  186 (443)
T ss_pred             CCCccccCCCeEEEECCCcc
Confidence              112335678888886554

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.85  E-value=7.8e-05  Score=73.84  Aligned_cols=81  Identities=22%  Similarity=0.203  Sum_probs=64.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEE
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE  240 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~  240 (433)
                      .+++++|+|+|.+|+++|..|.+.|.+|+++++.+.        +....+.+.+++.||+++++..+.            
T Consensus        15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~--------~~~~~~~~~l~~~gv~~~~~~~~~------------   74 (480)
T PRK01438         15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD--------ERHRALAAILEALGATVRLGPGPT------------   74 (480)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch--------hhhHHHHHHHHHcCCEEEECCCcc------------
Confidence            468999999999999999999999999999976532        233445666888999998775432            


Q ss_pred             EEeCCCcEEECCEEEEcccCccChhhh
Q 013952          241 VKLKDGRTLEADIVVVGVGGRPLISLF  267 (433)
Q Consensus       241 v~~~~g~~i~~d~vi~a~G~~p~~~~~  267 (433)
                            ....+|.||+++|..|+.+++
T Consensus        75 ------~~~~~D~Vv~s~Gi~~~~~~~   95 (480)
T PRK01438         75 ------LPEDTDLVVTSPGWRPDAPLL   95 (480)
T ss_pred             ------ccCCCCEEEECCCcCCCCHHH
Confidence                  024589999999999999865

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=97.85  E-value=0.00018  Score=71.54  Aligned_cols=96  Identities=20%  Similarity=0.202  Sum_probs=70.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC-ccC--C---C--------------CC--------------------
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEP-WCM--P---R--------------LF--------------------  202 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~-~~~--~---~--------------~~--------------------  202 (433)
                      -.|+|||+|+.|+++|..+++.|.+|.++++.. .+.  +   .              .+                    
T Consensus         5 yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~ln~   84 (618)
T PRK05192          5 YDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRMLNT   84 (618)
T ss_pred             ceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeeccc
Confidence            369999999999999999999999999998762 110  0   0              00                    


Q ss_pred             -------------CH-HHHHHHHHHHHhc-CcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013952          203 -------------TA-DIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG  260 (433)
Q Consensus       203 -------------~~-~~~~~l~~~l~~~-GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~  260 (433)
                                   |. .+...+.+.+++. |++++ ...+.++.. +++++.+|.+.+|..+.|+.||+|+|.
T Consensus        85 skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~-e~grV~GV~t~dG~~I~Ak~VIlATGT  155 (618)
T PRK05192         85 SKGPAVRALRAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIV-ENGRVVGVVTQDGLEFRAKAVVLTTGT  155 (618)
T ss_pred             CCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEe-cCCEEEEEEECCCCEEECCEEEEeeCc
Confidence                         00 1223444455544 88886 456788765 467788899999999999999999994

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.85  E-value=6.9e-05  Score=73.85  Aligned_cols=97  Identities=11%  Similarity=0.228  Sum_probs=68.2

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhCC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKG   85 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (433)
                      .+++|||||+.|+..|..+++.|.+   |+|+++.....                  +.+.    ......+.+.+++. 
T Consensus       175 ~~vvIiGgG~iG~E~A~~l~~~G~~---Vtlv~~~~~il------------------~~~d----~~~~~~~~~~l~~~-  228 (471)
T PRK06467        175 KRLLVMGGGIIGLEMGTVYHRLGSE---VDVVEMFDQVI------------------PAAD----KDIVKVFTKRIKKQ-  228 (471)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCC---EEEEecCCCCC------------------CcCC----HHHHHHHHHHHhhc-
Confidence            6899999999999999999999987   99999871110                  0000    00012334556566 


Q ss_pred             cEEEeCceEEEEECCCCE--EEeCCC----cEEecceEEEccCCCcccc
Q 013952           86 IELILSTEIVRADIASKT--LLSATG----LIFKYQILVIATGSTVLRL  128 (433)
Q Consensus        86 v~~~~~~~v~~i~~~~~~--v~~~~~----~~~~~d~lvlAtG~~~~~~  128 (433)
                      ++++.++.+..+...+..  +.+.++    .++++|.+++|+|.+|...
T Consensus       229 v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~  277 (471)
T PRK06467        229 FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNGK  277 (471)
T ss_pred             eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecccccCC
Confidence            999999999988754433  333332    4699999999999988754

>PRK06753 hypothetical protein; Provisional

Probab=97.85  E-value=0.00015  Score=69.42  Aligned_cols=100  Identities=15%  Similarity=0.170  Sum_probs=70.6

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCC----CCHHH---------------------------------
Q 013952          164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL----FTADI---------------------------------  206 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~----~~~~~---------------------------------  206 (433)
                      +|+|||+|+.|+-+|..|++.|.+|+++++.+.+....    +.+..                                 
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~~~   81 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGTLL   81 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCCEE
Confidence            68999999999999999999999999998765421100    00000                                 


Q ss_pred             ---------------HHHHHHHHHh--cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChh
Q 013952          207 ---------------AAFYEGYYAN--KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS  265 (433)
Q Consensus       207 ---------------~~~l~~~l~~--~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~  265 (433)
                                     ...+.+.|.+  .+.++++++++++++.+ ++ ...+.+.+|+++.+|+||-|-|.+..+.
T Consensus        82 ~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~-~~-~v~v~~~~g~~~~~~~vigadG~~S~vR  155 (373)
T PRK06753         82 NKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENE-TD-KVTIHFADGESEAFDLCIGADGIHSKVR  155 (373)
T ss_pred             eecccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEec-CC-cEEEEECCCCEEecCEEEECCCcchHHH
Confidence                           0112223322  24678999999999863 33 2567888898999999999999776554

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.83  E-value=0.00028  Score=68.58  Aligned_cols=102  Identities=25%  Similarity=0.395  Sum_probs=71.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC----C--CCC--------------------------------
Q 013952          162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP----R--LFT--------------------------------  203 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~----~--~~~--------------------------------  203 (433)
                      ..+|+|||+|+.|+-+|..|++.|.+|+++++.+....    +  .+.                                
T Consensus        18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~   97 (415)
T PRK07364         18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDAD   97 (415)
T ss_pred             ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeCC
Confidence            35799999999999999999999999999987543210    0  000                                


Q ss_pred             -----------------------HHHHHHHHHHHHh-cCcEEEcCCeEEEEEecCCCcEEEEEeCC-C--cEEECCEEEE
Q 013952          204 -----------------------ADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKLKD-G--RTLEADIVVV  256 (433)
Q Consensus       204 -----------------------~~~~~~l~~~l~~-~GV~v~~~~~v~~i~~~~~g~~~~v~~~~-g--~~i~~d~vi~  256 (433)
                                             ..+.+.+.+.+.+ .||++++++++.+++.++++  ..+++.+ +  .++++|+||.
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~--~~v~~~~~~~~~~i~adlvIg  175 (415)
T PRK07364         98 YPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDA--ATVTLEIEGKQQTLQSKLVVA  175 (415)
T ss_pred             CCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe--eEEEEccCCcceEEeeeEEEE
Confidence                                   1122333344444 37999999999999763333  3466653 2  3699999999


Q ss_pred             cccCccChh
Q 013952          257 GVGGRPLIS  265 (433)
Q Consensus       257 a~G~~p~~~  265 (433)
                      |.|......
T Consensus       176 ADG~~S~vR  184 (415)
T PRK07364        176 ADGARSPIR  184 (415)
T ss_pred             eCCCCchhH
Confidence            999876553

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=97.83  E-value=0.00039  Score=70.12  Aligned_cols=103  Identities=25%  Similarity=0.329  Sum_probs=72.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCC-----------------------------------------
Q 013952          162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR-----------------------------------------  200 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~-----------------------------------------  200 (433)
                      ...|+|||+|+.|+-+|..|.+.|.+|+++++.+.+...                                         
T Consensus        23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~  102 (547)
T PRK08132         23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRDEE  102 (547)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeCCCe
Confidence            358999999999999999999999999999876422100                                         


Q ss_pred             -----C-------------C-CHHHHHHHHHHHHh-cCcEEEcCCeEEEEEecCCCcEEEEEeCCCc-EEECCEEEEccc
Q 013952          201 -----L-------------F-TADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKLKDGR-TLEADIVVVGVG  259 (433)
Q Consensus       201 -----~-------------~-~~~~~~~l~~~l~~-~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~-~i~~d~vi~a~G  259 (433)
                           .             . ...+.+.+.+.+++ .++++++++++.+++.++++....++..++. ++.+|.||.|.|
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgADG  182 (547)
T PRK08132        103 VYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACDG  182 (547)
T ss_pred             EEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECCC
Confidence                 0             0 01222344555555 4799999999999987444433334434554 699999999999


Q ss_pred             CccCh
Q 013952          260 GRPLI  264 (433)
Q Consensus       260 ~~p~~  264 (433)
                      .+...
T Consensus       183 ~~S~v  187 (547)
T PRK08132        183 ARSPL  187 (547)
T ss_pred             CCcHH
Confidence            87765

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=97.83  E-value=0.0003  Score=67.69  Aligned_cols=97  Identities=19%  Similarity=0.269  Sum_probs=71.7

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCC-------------------------------------------
Q 013952          164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR-------------------------------------------  200 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~-------------------------------------------  200 (433)
                      .|+|||+|+.|+-+|..|++.|.+|+++++.+.+...                                           
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG   80 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence            3799999999999999999999999999976432100                                           


Q ss_pred             -CCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013952          201 -LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP  262 (433)
Q Consensus       201 -~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p  262 (433)
                       .....+.+.+.+.+.+.|++++ ..++..+... ++....|.+.+|+++.++.||.|+|..+
T Consensus        81 ~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~-~~~~~~v~~~~g~~~~a~~VI~A~G~~s  141 (388)
T TIGR01790        81 SVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEAD-GVALSTVYCAGGQRIQARLVIDARGFGP  141 (388)
T ss_pred             EEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEec-CCceeEEEeCCCCEEEeCEEEECCCCch
Confidence             0002334556666677799886 5578888762 2444567888888899999999999876

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PRK08013 oxidoreductase; Provisional

Probab=97.82  E-value=0.00028  Score=68.22  Aligned_cols=101  Identities=20%  Similarity=0.221  Sum_probs=74.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCC------C----CC-----------------------------
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR------L----FT-----------------------------  203 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~------~----~~-----------------------------  203 (433)
                      ..|+|||+|+.|+-+|..|++.|.+|+++++.+.....      .    +.                             
T Consensus         4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~~   83 (400)
T PRK08013          4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGMEV   83 (400)
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEEE
Confidence            47999999999999999999999999999876431100      0    00                             


Q ss_pred             ---------------------------HHHHHHHHHHHHhc-CcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEE
Q 013952          204 ---------------------------ADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVV  255 (433)
Q Consensus       204 ---------------------------~~~~~~l~~~l~~~-GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi  255 (433)
                                                 ..+.+.+.+.+++. ||++++++++.+++.++++  ..+.+.+|+++.+|+||
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~--v~v~~~~g~~i~a~lvV  161 (400)
T PRK08013         84 WDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENE--AFLTLKDGSMLTARLVV  161 (400)
T ss_pred             EeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe--EEEEEcCCCEEEeeEEE
Confidence                                       01223344444543 7999999999999774433  56778889899999999


Q ss_pred             EcccCccChh
Q 013952          256 VGVGGRPLIS  265 (433)
Q Consensus       256 ~a~G~~p~~~  265 (433)
                      -|-|.+....
T Consensus       162 gADG~~S~vR  171 (400)
T PRK08013        162 GADGANSWLR  171 (400)
T ss_pred             EeCCCCcHHH
Confidence            9999876553

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.82  E-value=0.0003  Score=67.27  Aligned_cols=99  Identities=14%  Similarity=0.266  Sum_probs=72.4

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEccCC----ccCC--CC--C---------------------------------
Q 013952          164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEP----WCMP--RL--F---------------------------------  202 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~----~~~~--~~--~---------------------------------  202 (433)
                      .|+|||+|+.|+-+|..|++.|.+|+++++.+    .+.+  +.  +                                 
T Consensus         3 dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~   82 (374)
T PRK06617          3 NTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVDNK   82 (374)
T ss_pred             cEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEECC
Confidence            68999999999999999999999999998642    1000  00  0                                 


Q ss_pred             --------------------CHHHHHHHHHHHHhc-CcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013952          203 --------------------TADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR  261 (433)
Q Consensus       203 --------------------~~~~~~~l~~~l~~~-GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~  261 (433)
                                          ..++.+.+.+.+++. ++++++++++.++...+++  ..+.+.++ ++.+|+||-|-|.+
T Consensus        83 g~~~~~~~~~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~v~~~~~-~~~adlvIgADG~~  159 (374)
T PRK06617         83 ASEILDLRNDADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDY--SIIKFDDK-QIKCNLLIICDGAN  159 (374)
T ss_pred             CceEEEecCCCCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCe--EEEEEcCC-EEeeCEEEEeCCCC
Confidence                                013344555555555 4899999999999774433  45777776 89999999999987


Q ss_pred             cChh
Q 013952          262 PLIS  265 (433)
Q Consensus       262 p~~~  265 (433)
                      ....
T Consensus       160 S~vR  163 (374)
T PRK06617        160 SKVR  163 (374)
T ss_pred             chhH
Confidence            6654

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=97.82  E-value=9.5e-05  Score=77.80  Aligned_cols=90  Identities=16%  Similarity=0.142  Sum_probs=65.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC-------CC-CCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEec
Q 013952          162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN  233 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~-------~~-~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~  233 (433)
                      +++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.       +. ..+.+..+...+.+++.||+++++....     
T Consensus       537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~GVe~~~g~~~d-----  611 (1012)
T TIGR03315       537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHGVEFKYGCSPD-----  611 (1012)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhcCcEEEEecccc-----
Confidence            5799999999999999999999999999998765431       11 1345566666677888999998874211     


Q ss_pred             CCCcEEEEEeCCCcEEECCEEEEcccCccC
Q 013952          234 ADGEVKEVKLKDGRTLEADIVVVGVGGRPL  263 (433)
Q Consensus       234 ~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~  263 (433)
                             +.+.+.+...+|.||+|+|.++.
T Consensus       612 -------~~ve~l~~~gYDaVIIATGA~~~  634 (1012)
T TIGR03315       612 -------LTVAELKNQGYKYVILAIGAWKH  634 (1012)
T ss_pred             -------eEhhhhhcccccEEEECCCCCCC
Confidence                   11122234568999999998653

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=97.82  E-value=0.00037  Score=67.16  Aligned_cols=101  Identities=20%  Similarity=0.319  Sum_probs=74.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC-------------------------------------C--C--
Q 013952          162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------------------------------------P--R--  200 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~-------------------------------------~--~--  200 (433)
                      ...|+|||+|+.|+-+|..|++.|.+|+++++.+...                                     +  .  
T Consensus         5 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~   84 (391)
T PRK08020          5 PTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRLE   84 (391)
T ss_pred             cccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceEE
Confidence            3479999999999999999999999999998753100                                     0  0  


Q ss_pred             ---C------C---------------CHHHHHHHHHHHHhc-CcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEE
Q 013952          201 ---L------F---------------TADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVV  255 (433)
Q Consensus       201 ---~------~---------------~~~~~~~l~~~l~~~-GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi  255 (433)
                         .      +               ...+.+.+.+.+++. |+++++++++.++...+++  ..|.+.+|+++.+|.||
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~~vI  162 (391)
T PRK08020         85 TWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDG--WELTLADGEEIQAKLVI  162 (391)
T ss_pred             EEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCe--EEEEECCCCEEEeCEEE
Confidence               0      0               012233444555555 9999999999999763333  56778888899999999


Q ss_pred             EcccCccCh
Q 013952          256 VGVGGRPLI  264 (433)
Q Consensus       256 ~a~G~~p~~  264 (433)
                      .|.|.....
T Consensus       163 ~AdG~~S~v  171 (391)
T PRK08020        163 GADGANSQV  171 (391)
T ss_pred             EeCCCCchh
Confidence            999987654

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.81  E-value=2.1e-05  Score=76.89  Aligned_cols=34  Identities=24%  Similarity=0.459  Sum_probs=32.2

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ++++|||||||+|||+||+.|.+.|++   |+|+|..
T Consensus        14 ~~~~VIVIGAGiaGLsAArqL~~~G~~---V~VLEAR   47 (501)
T KOG0029|consen   14 KKKKVIVIGAGLAGLSAARQLQDFGFD---VLVLEAR   47 (501)
T ss_pred             CCCcEEEECCcHHHHHHHHHHHHcCCc---eEEEecc
Confidence            367999999999999999999999998   9999998

>PRK10015 oxidoreductase; Provisional

Probab=97.80  E-value=0.00037  Score=67.82  Aligned_cols=98  Identities=20%  Similarity=0.315  Sum_probs=72.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc------------------CCCC-----------------------
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC------------------MPRL-----------------------  201 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~------------------~~~~-----------------------  201 (433)
                      -.|+|||+|+.|+-+|..|++.|.+|.++++.+.+                  .+.+                       
T Consensus         6 ~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~   85 (429)
T PRK10015          6 FDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLTEESA   85 (429)
T ss_pred             cCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEEeCCCc
Confidence            37999999999999999999999999999865321                  0000                       


Q ss_pred             ----C----------------CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013952          202 ----F----------------TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR  261 (433)
Q Consensus       202 ----~----------------~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~  261 (433)
                          +                ...+.+.+.+.+++.|++++.+++|+.+.. +++++..+.. ++.++.||.||.|.|..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~-~~~~v~~v~~-~~~~i~A~~VI~AdG~~  163 (429)
T PRK10015         86 VTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVR-EGNKVTGVQA-GDDILEANVVILADGVN  163 (429)
T ss_pred             eEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEE-eCCEEEEEEe-CCeEEECCEEEEccCcc
Confidence                0                012233466677888999999999999876 3455555554 34579999999999975


Q ss_pred             c
Q 013952          262 P  262 (433)
Q Consensus       262 p  262 (433)
                      .
T Consensus       164 s  164 (429)
T PRK10015        164 S  164 (429)
T ss_pred             h
Confidence            4

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.80  E-value=6e-05  Score=77.06  Aligned_cols=91  Identities=22%  Similarity=0.261  Sum_probs=69.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC--------CCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM--------PRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTT  232 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~--------~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~  232 (433)
                      .+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.        +..++.++.+...+.+++.||++++++.+..-  
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~--  386 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRD--  386 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCc--
Confidence            36899999999999999999999999999999877532        11256777777778889999999999876311  


Q ss_pred             cCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013952          233 NADGEVKEVKLKDGRTLEADIVVVGVGGRP  262 (433)
Q Consensus       233 ~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p  262 (433)
                              +.+.+ ....+|.|++|+|..+
T Consensus       387 --------~~~~~-l~~~~DaV~latGa~~  407 (639)
T PRK12809        387 --------ITFSD-LTSEYDAVFIGVGTYG  407 (639)
T ss_pred             --------CCHHH-HHhcCCEEEEeCCCCC
Confidence                    11111 1246899999999754

>PTZ00188 adrenodoxin reductase; Provisional

Probab=97.78  E-value=0.00012  Score=70.53  Aligned_cols=130  Identities=11%  Similarity=0.130  Sum_probs=76.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHH-HhCCCeEEEEccCCccCC--------CC-CCHHHHHHHHHHHHhcCcEEEcCCeEEEE
Q 013952          161 KNGKAVVVGGGYIGLELSAAL-KINNIDVSMVYPEPWCMP--------RL-FTADIAAFYEGYYANKGIKIIKGTVAVGF  230 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l-~~~g~~V~li~~~~~~~~--------~~-~~~~~~~~l~~~l~~~GV~v~~~~~v~~i  230 (433)
                      .+++|+|||+|+.|+.+|..| ++.|.+|+++++.+.+..        .. .-..+.+.+.+.+...+++++.+..+.. 
T Consensus        38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~VG~-  116 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHVGV-  116 (506)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEecC-
Confidence            478999999999999999965 567999999998876431        10 1134555666667778888875433311 


Q ss_pred             EecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhhhcccccCCCcEEeCCCCCCCCCCeEEcCcccccccc
Q 013952          231 TTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMK  303 (433)
Q Consensus       231 ~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~~~~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~  303 (433)
                               .+..++ -.-.+|.||+|+|..+....+.  -......+.--+.+.+..+++|.+.|...+++.
T Consensus       117 ---------Dvt~ee-L~~~YDAVIlAtGA~~l~ipi~--~~~~~~~~~GGe~~~~~l~Gvf~A~dfV~WYNg  177 (506)
T PTZ00188        117 ---------DLKMEE-LRNHYNCVIFCCGASEVSIPIG--QQDEDKAVSGGETNPRKQNGIFHARDLIYFYNN  177 (506)
T ss_pred             ---------ccCHHH-HHhcCCEEEEEcCCCCCCCCcc--cccceeeeccccccccccCcEEehheEEEeecC
Confidence                     111111 1236899999999775321110  000111111112222236788888887766543

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=97.78  E-value=7.1e-05  Score=79.92  Aligned_cols=93  Identities=25%  Similarity=0.270  Sum_probs=68.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC-------CC-CCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEec
Q 013952          162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN  233 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~-------~~-~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~  233 (433)
                      +++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.       +. ..+.++.+...+.+++.||++++++.+..    
T Consensus       430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg~----  505 (1006)
T PRK12775        430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIETNKVIGK----  505 (1006)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCCCEEEeCCccCC----
Confidence            5799999999999999999999999999998765431       11 13678888888889999999999965411    


Q ss_pred             CCCcEEEEEeCCC-cEEECCEEEEcccCc-cCh
Q 013952          234 ADGEVKEVKLKDG-RTLEADIVVVGVGGR-PLI  264 (433)
Q Consensus       234 ~~g~~~~v~~~~g-~~i~~d~vi~a~G~~-p~~  264 (433)
                            .+...+- ....+|.||+|||.. |+.
T Consensus       506 ------~~~~~~l~~~~~yDaViIATGa~~pr~  532 (1006)
T PRK12775        506 ------TFTVPQLMNDKGFDAVFLGVGAGAPTF  532 (1006)
T ss_pred             ------ccCHHHHhhccCCCEEEEecCCCCCCC
Confidence                  1111111 124589999999974 543

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=97.78  E-value=0.00012  Score=68.16  Aligned_cols=56  Identities=18%  Similarity=0.230  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013952          204 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG  260 (433)
Q Consensus       204 ~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~  260 (433)
                      ..++..+.+.+++.|-++.+.+.|++|.. ++|+..+|.+.||+++.+..|+..++.
T Consensus       264 Gavs~aia~~~~~~GaeI~tka~Vq~Ill-d~gka~GV~L~dG~ev~sk~VvSNAt~  319 (561)
T KOG4254|consen  264 GAVSFAIAEGAKRAGAEIFTKATVQSILL-DSGKAVGVRLADGTEVRSKIVVSNATP  319 (561)
T ss_pred             hHHHHHHHHHHHhccceeeehhhhhheec-cCCeEEEEEecCCcEEEeeeeecCCch
Confidence            46788889999999999999999999987 459999999999999999888876654

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=97.77  E-value=9.3e-05  Score=72.11  Aligned_cols=73  Identities=16%  Similarity=0.196  Sum_probs=60.1

Q ss_pred             CeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccC
Q 013952          186 IDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL  263 (433)
Q Consensus       186 ~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~  263 (433)
                      ..-.+..+.+..+.   +..+.+.+....++.|..++.++.|+++.. .+++..+|++..| .+++..+|-|+|+...
T Consensus       172 v~g~Ly~P~DG~~D---P~~lC~ala~~A~~~GA~viE~cpV~~i~~-~~~~~~gVeT~~G-~iet~~~VNaaGvWAr  244 (856)
T KOG2844|consen  172 VYGGLYSPGDGVMD---PAGLCQALARAASALGALVIENCPVTGLHV-ETDKFGGVETPHG-SIETECVVNAAGVWAR  244 (856)
T ss_pred             heeeeecCCCcccC---HHHHHHHHHHHHHhcCcEEEecCCcceEEe-ecCCccceeccCc-ceecceEEechhHHHH
Confidence            34467777776653   667888999999999999999999999987 4555569999998 6999999999998653

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=97.75  E-value=7.7e-05  Score=73.54  Aligned_cols=90  Identities=19%  Similarity=0.192  Sum_probs=67.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC-------CC-CCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT  232 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~-------~~-~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~  232 (433)
                      .+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.       +. ..+.++.....+.+++.||++++++.+.. ..
T Consensus       142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~-~~  220 (471)
T PRK12810        142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVGK-DI  220 (471)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEeCCEECC-cC
Confidence            35799999999999999999999999999999876542       11 13566667777788999999999986532 10


Q ss_pred             cCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013952          233 NADGEVKEVKLKDGRTLEADIVVVGVGGR  261 (433)
Q Consensus       233 ~~~g~~~~v~~~~g~~i~~d~vi~a~G~~  261 (433)
                               .. +.....+|.||+|+|..
T Consensus       221 ---------~~-~~~~~~~d~vvlAtGa~  239 (471)
T PRK12810        221 ---------TA-EELLAEYDAVFLGTGAY  239 (471)
T ss_pred             ---------CH-HHHHhhCCEEEEecCCC
Confidence                     00 11124699999999987

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=97.75  E-value=0.0008  Score=57.18  Aligned_cols=106  Identities=19%  Similarity=0.225  Sum_probs=70.8

Q ss_pred             hcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCC------CC-----------------------------
Q 013952          159 AKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL------FT-----------------------------  203 (433)
Q Consensus       159 ~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~------~~-----------------------------  203 (433)
                      +.....++|+|+|++|+-+|..|++.|.+|.++++...+....      |+                             
T Consensus        14 ~~~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g~~v~   93 (230)
T PF01946_consen   14 DYLEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDGYYVA   93 (230)
T ss_dssp             HHTEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSEEEES
T ss_pred             hhccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCeEEEE
Confidence            3356789999999999999999999999999998764332110      11                             


Q ss_pred             --HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC------CC-----cEEECCEEEEcccCccCh
Q 013952          204 --ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK------DG-----RTLEADIVVVGVGGRPLI  264 (433)
Q Consensus       204 --~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~------~g-----~~i~~d~vi~a~G~~p~~  264 (433)
                        .++...+....-+.|++++....|+.+...+++++.+|..+      .|     -.+++..||-|||.....
T Consensus        94 d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~v  167 (230)
T PF01946_consen   94 DSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAEV  167 (230)
T ss_dssp             -HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSSS
T ss_pred             cHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchHH
Confidence              13344444445558999999999999876344788777763      22     379999999999976544

>PRK06475 salicylate hydroxylase; Provisional

Probab=97.75  E-value=0.00049  Score=66.49  Aligned_cols=100  Identities=18%  Similarity=0.248  Sum_probs=70.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCC------------------------------------------
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR------------------------------------------  200 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~------------------------------------------  200 (433)
                      ++|+|||+|+.|+-+|..|++.|.+|+++++.+.+...                                          
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~   82 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR   82 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence            68999999999999999999999999999876431000                                          


Q ss_pred             -CC--------------------CHHHHHHHHHHHHh-cCcEEEcCCeEEEEEecCCCcEEEEEe---CCCcEEECCEEE
Q 013952          201 -LF--------------------TADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKL---KDGRTLEADIVV  255 (433)
Q Consensus       201 -~~--------------------~~~~~~~l~~~l~~-~GV~v~~~~~v~~i~~~~~g~~~~v~~---~~g~~i~~d~vi  255 (433)
                       ..                    -.++.+.+.+.+.+ .+++++++++++++..++++  ..+++   .+++.+++|+||
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~--v~v~~~~~~~~~~~~adlvI  160 (400)
T PRK06475         83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNS--ITATIIRTNSVETVSAAYLI  160 (400)
T ss_pred             eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCc--eEEEEEeCCCCcEEecCEEE
Confidence             00                    01223344444444 48999999999999873333  34444   344679999999


Q ss_pred             EcccCccCh
Q 013952          256 VGVGGRPLI  264 (433)
Q Consensus       256 ~a~G~~p~~  264 (433)
                      -|-|.+...
T Consensus       161 gADG~~S~v  169 (400)
T PRK06475        161 ACDGVWSML  169 (400)
T ss_pred             ECCCccHhH
Confidence            999976544

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=97.75  E-value=0.00053  Score=66.41  Aligned_cols=101  Identities=21%  Similarity=0.361  Sum_probs=72.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccC-CccC----C--C--CCCH----------------------------
Q 013952          162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPE-PWCM----P--R--LFTA----------------------------  204 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~-~~~~----~--~--~~~~----------------------------  204 (433)
                      ...|+|||+|+.|+-+|..|++.|.+|+++++. +...    +  +  .+.+                            
T Consensus         4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~   83 (405)
T PRK08850          4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAMEV   83 (405)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEEE
Confidence            357999999999999999999999999999874 1100    0  0  0000                            


Q ss_pred             ----------------------------HHHHHHHHHHHh-cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEE
Q 013952          205 ----------------------------DIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVV  255 (433)
Q Consensus       205 ----------------------------~~~~~l~~~l~~-~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi  255 (433)
                                                  .+.+.+.+.+.+ .||+++.++++++++.++++  ..|.+.+|+++.+|+||
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~lvI  161 (405)
T PRK08850         84 WEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESE--AWLTLDNGQALTAKLVV  161 (405)
T ss_pred             EeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCe--EEEEECCCCEEEeCEEE
Confidence                                        122233333444 47999999999999763333  56888899999999999


Q ss_pred             EcccCccCh
Q 013952          256 VGVGGRPLI  264 (433)
Q Consensus       256 ~a~G~~p~~  264 (433)
                      .|-|.....
T Consensus       162 gADG~~S~v  170 (405)
T PRK08850        162 GADGANSWL  170 (405)
T ss_pred             EeCCCCChh
Confidence            999976544

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=97.74  E-value=0.00014  Score=73.76  Aligned_cols=98  Identities=15%  Similarity=0.072  Sum_probs=67.0

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhH-HHhC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEW-YKEK   84 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~   84 (433)
                      .+++|||||+.|+-.|..+++.|.+   |+++++......       .+.    .           +........ +++.
T Consensus       313 k~VvIVGgG~iGvE~A~~l~~~G~e---VTLIe~~~~ll~-------~~d----~-----------eis~~l~~~ll~~~  367 (659)
T PTZ00153        313 NYMGIVGMGIIGLEFMDIYTALGSE---VVSFEYSPQLLP-------LLD----A-----------DVAKYFERVFLKSK  367 (659)
T ss_pred             CceEEECCCHHHHHHHHHHHhCCCe---EEEEeccCcccc-------cCC----H-----------HHHHHHHHHHhhcC
Confidence            5899999999999999999998876   999998711100       000    0           001122333 3568


Q ss_pred             CcEEEeCceEEEEECCCC--EEE--eCC-------C--------cEEecceEEEccCCCcccc
Q 013952           85 GIELILSTEIVRADIASK--TLL--SAT-------G--------LIFKYQILVIATGSTVLRL  128 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~--~v~--~~~-------~--------~~~~~d~lvlAtG~~~~~~  128 (433)
                      ||+++.++.|..+...+.  .+.  +.+       +        +++++|.+++|+|.+|...
T Consensus       368 GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~  430 (659)
T PTZ00153        368 PVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTN  430 (659)
T ss_pred             CcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCCc
Confidence            999999999999876442  232  211       1        2699999999999998754

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=97.73  E-value=9.3e-05  Score=75.75  Aligned_cols=92  Identities=21%  Similarity=0.230  Sum_probs=68.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc-------CCC-CCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC-------MPR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT  232 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~-------~~~-~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~  232 (433)
                      .+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+       .+. ..+.++.+...+.+++.|+++++++.+. +. 
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~-~d-  269 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFG-RD-  269 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCccc-Cc-
Confidence            3579999999999999999999999999999987653       111 1466777777788899999999887542 11 


Q ss_pred             cCCCcEEEEEeCCCcEEECCEEEEcccCccC
Q 013952          233 NADGEVKEVKLKDGRTLEADIVVVGVGGRPL  263 (433)
Q Consensus       233 ~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~  263 (433)
                              +.+.+. ...+|.||+|+|..+.
T Consensus       270 --------v~~~~~-~~~~DaVilAtGa~~~  291 (652)
T PRK12814        270 --------ITLEEL-QKEFDAVLLAVGAQKA  291 (652)
T ss_pred             --------cCHHHH-HhhcCEEEEEcCCCCC
Confidence                    111111 2359999999998653

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=97.73  E-value=8e-05  Score=70.23  Aligned_cols=85  Identities=27%  Similarity=0.449  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHHhc-CcEEEcCCeEEEEEecCCCcEEEEEeC-----CCcEEECCEEEEcccCccChhhhhccccc--CC
Q 013952          204 ADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVKEVKLK-----DGRTLEADIVVVGVGGRPLISLFKGQVAE--NK  275 (433)
Q Consensus       204 ~~~~~~l~~~l~~~-GV~v~~~~~v~~i~~~~~g~~~~v~~~-----~g~~i~~d~vi~a~G~~p~~~~~~~~~~~--~~  275 (433)
                      ..+.+.+.+.+++. |++++++++|+.|+..++|. +.|...     +..++.++.|++..|-..-.-+-..++..  .-
T Consensus       181 G~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~-W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~LLqksgi~e~~gy  259 (488)
T PF06039_consen  181 GALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGR-WEVKVKDLKTGEKREVRAKFVFVGAGGGALPLLQKSGIPEGKGY  259 (488)
T ss_pred             HHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCC-EEEEEEecCCCCeEEEECCEEEECCchHhHHHHHHcCChhhccc
Confidence            45666677777666 99999999999999866663 344432     23579999999999976544333556543  33


Q ss_pred             CcEEeC-CCCCCCCC
Q 013952          276 GGIETD-DFFKTSAD  289 (433)
Q Consensus       276 g~i~vd-~~~~t~~~  289 (433)
                      |+.+|. .++++..|
T Consensus       260 ggfPVsG~fl~~~n~  274 (488)
T PF06039_consen  260 GGFPVSGQFLRCKNP  274 (488)
T ss_pred             CCCcccceEEecCCH
Confidence            444444 44665443

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=97.73  E-value=0.00041  Score=69.75  Aligned_cols=101  Identities=25%  Similarity=0.339  Sum_probs=72.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCC----------------------------------C------
Q 013952          162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----------------------------------L------  201 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~----------------------------------~------  201 (433)
                      ...|+|||+|+.|+-+|..|.+.|.+|+++++.+.+...                                  +      
T Consensus        10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~g~   89 (538)
T PRK06183         10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAKGR   89 (538)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCCCC
Confidence            458999999999999999999999999999876421100                                  0      


Q ss_pred             ----CC-----------------HHHHHHHHHHHHh-cCcEEEcCCeEEEEEecCCCcEEEEEeC--CC--cEEECCEEE
Q 013952          202 ----FT-----------------ADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKLK--DG--RTLEADIVV  255 (433)
Q Consensus       202 ----~~-----------------~~~~~~l~~~l~~-~GV~v~~~~~v~~i~~~~~g~~~~v~~~--~g--~~i~~d~vi  255 (433)
                          ++                 +.+.+.+.+.+.+ .|+++++++++++++.++++  ..+.+.  +|  .++.+|.||
T Consensus        90 ~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~--v~v~~~~~~G~~~~i~ad~vV  167 (538)
T PRK06183         90 CLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDG--VTVTLTDADGQRETVRARYVV  167 (538)
T ss_pred             EEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCe--EEEEEEcCCCCEEEEEEEEEE
Confidence                00                 1223344445554 49999999999999875444  345554  56  479999999


Q ss_pred             EcccCccCh
Q 013952          256 VGVGGRPLI  264 (433)
Q Consensus       256 ~a~G~~p~~  264 (433)
                      -|.|.+...
T Consensus       168 gADG~~S~v  176 (538)
T PRK06183        168 GCDGANSFV  176 (538)
T ss_pred             ecCCCchhH
Confidence            999976544

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=97.72  E-value=0.00047  Score=66.23  Aligned_cols=101  Identities=19%  Similarity=0.246  Sum_probs=72.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc--cC---C-C----CCCH----------------------------
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW--CM---P-R----LFTA----------------------------  204 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~--~~---~-~----~~~~----------------------------  204 (433)
                      ..|+|||+|+.|+-+|..|++.|.+|+++++.+.  +.   . .    .+.+                            
T Consensus         4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~~   83 (384)
T PRK08849          4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLET   83 (384)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEEE
Confidence            4799999999999999999999999999996531  00   0 0    0000                            


Q ss_pred             ---------------------------HHHHHHHHHHHh-cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEE
Q 013952          205 ---------------------------DIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVV  256 (433)
Q Consensus       205 ---------------------------~~~~~l~~~l~~-~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~  256 (433)
                                                 .+...+.+.+++ .|++++.++++.+++.++++  ..+++.+|+++.+|+||.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~--~~v~~~~g~~~~~~lvIg  161 (384)
T PRK08849         84 WEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEG--NRVTLESGAEIEAKWVIG  161 (384)
T ss_pred             EeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCe--EEEEECCCCEEEeeEEEE
Confidence                                       011112222322 47999999999999874443  568888999999999999


Q ss_pred             cccCccChh
Q 013952          257 GVGGRPLIS  265 (433)
Q Consensus       257 a~G~~p~~~  265 (433)
                      |.|..+...
T Consensus       162 ADG~~S~vR  170 (384)
T PRK08849        162 ADGANSQVR  170 (384)
T ss_pred             ecCCCchhH
Confidence            999877654

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=97.71  E-value=0.00013  Score=73.95  Aligned_cols=54  Identities=17%  Similarity=0.087  Sum_probs=38.3

Q ss_pred             CCCcEEeCCCCCCCCCCeEEcCccccccccccCcccc-cccHHHHHHHHHHHHHHHhc
Q 013952          274 NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRR-VEHVDHARKSAEQAVKTIMA  330 (433)
Q Consensus       274 ~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~-~~~~~~A~~~g~~aa~~i~~  330 (433)
                      ..|+|.+|...+|++|++||+|+|++..   +|..+. -.+...+.-.|+.|++++..
T Consensus       369 ~~gG~~~d~~~~t~i~gL~a~Ge~~~~~---hg~nrl~~~sl~~~~v~g~~Ag~~aa~  423 (603)
T TIGR01811       369 TMGGLWVDYDQMTNIPGLFAAGECDFSQ---HGANRLGANSLLSAIADGYFALPFTIP  423 (603)
T ss_pred             eCCCeeECCCCcccCCCEEECcccccCc---CCCccchhHHHHHHHHHHHHHHHHHHH
Confidence            4689999999999999999999997543   222211 13445566677777777654

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=97.71  E-value=9.6e-05  Score=65.60  Aligned_cols=59  Identities=15%  Similarity=0.115  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCC---cEEEEEeCCCcEEECCEEEEcccCcc
Q 013952          204 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG---EVKEVKLKDGRTLEADIVVVGVGGRP  262 (433)
Q Consensus       204 ~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g---~~~~v~~~~g~~i~~d~vi~a~G~~p  262 (433)
                      ..+...+-+.++..|-++.++-+++.+..+.++   -...|.-..++++++..++-|+|...
T Consensus       196 ~~v~ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~s  257 (453)
T KOG2665|consen  196 GSVTLSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQS  257 (453)
T ss_pred             HHHHHHHHHHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccH
Confidence            445556666688899999999999888763332   22344444568899999999999754

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.70  E-value=0.00012  Score=75.28  Aligned_cols=91  Identities=22%  Similarity=0.300  Sum_probs=67.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC-------CC-CCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT  232 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~-------~~-~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~  232 (433)
                      .+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.       +. .++.++.+...+.+++.||+++.++.+..   
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~---  402 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGK---  402 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCC---
Confidence            46899999999999999999999999999998865431       11 14567777777788899999999986521   


Q ss_pred             cCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013952          233 NADGEVKEVKLKDGRTLEADIVVVGVGGRP  262 (433)
Q Consensus       233 ~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p  262 (433)
                        +     +...+ ....+|.|++|+|..+
T Consensus       403 --~-----i~~~~-~~~~~DavilAtGa~~  424 (654)
T PRK12769        403 --D-----ISLES-LLEDYDAVFVGVGTYR  424 (654)
T ss_pred             --c-----CCHHH-HHhcCCEEEEeCCCCC
Confidence              0     11111 1236999999999653

>PLN02546 glutathione reductase

Probab=97.69  E-value=0.00014  Score=72.62  Aligned_cols=99  Identities=19%  Similarity=0.194  Sum_probs=68.8

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      ..+++|||||+.|+-.|..|++.|.+   |+|+++......                  .+.    ........+.+++.
T Consensus       252 ~k~V~VIGgG~iGvE~A~~L~~~g~~---Vtlv~~~~~il~------------------~~d----~~~~~~l~~~L~~~  306 (558)
T PLN02546        252 PEKIAIVGGGYIALEFAGIFNGLKSD---VHVFIRQKKVLR------------------GFD----EEVRDFVAEQMSLR  306 (558)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCe---EEEEEecccccc------------------ccC----HHHHHHHHHHHHHC
Confidence            46899999999999999999998866   999987711100                  000    00012345677889


Q ss_pred             CcEEEeCceEEEEECC-CCE--EEeCCCcEEecceEEEccCCCcccc
Q 013952           85 GIELILSTEIVRADIA-SKT--LLSATGLIFKYQILVIATGSTVLRL  128 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~-~~~--v~~~~~~~~~~d~lvlAtG~~~~~~  128 (433)
                      ||+++.++.+..+... +..  +...++....+|.+++|+|..|...
T Consensus       307 GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~  353 (558)
T PLN02546        307 GIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNTK  353 (558)
T ss_pred             CcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCCC
Confidence            9999999998888642 232  3334444445899999999988653

>TIGR00136 gidA glucose-inhibited division protein A

Probab=97.68  E-value=0.00072  Score=67.16  Aligned_cols=98  Identities=17%  Similarity=0.249  Sum_probs=71.0

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC------------------CCC--C---------------------
Q 013952          164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM------------------PRL--F---------------------  202 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~------------------~~~--~---------------------  202 (433)
                      .|+|||+|..|+++|..+++.|.+|.++++.....                  ...  +                     
T Consensus         2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~s   81 (617)
T TIGR00136         2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNSS   81 (617)
T ss_pred             eEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheecccC
Confidence            48999999999999999999999999998642110                  000  0                     


Q ss_pred             ------------C-HHHHHHHHHHHHhc-CcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013952          203 ------------T-ADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP  262 (433)
Q Consensus       203 ------------~-~~~~~~l~~~l~~~-GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p  262 (433)
                                  | ..+...+.+.+++. ++.++.+ .+..+..++++++.+|.+.+|..+.|+.||+|+|...
T Consensus        82 kgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL  154 (617)
T TIGR00136        82 KGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL  154 (617)
T ss_pred             CCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence                        0 01223455556665 7888765 5667655336788899999998999999999999763

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.67  E-value=0.00024  Score=70.41  Aligned_cols=135  Identities=17%  Similarity=0.141  Sum_probs=81.7

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      ..+|+|||+|.+|+++|..|+++|++   |+++|.....                  .           .....+.+++.
T Consensus        16 ~~~v~viG~G~~G~~~A~~L~~~G~~---V~~~d~~~~~------------------~-----------~~~~~~~l~~~   63 (480)
T PRK01438         16 GLRVVVAGLGVSGFAAADALLELGAR---VTVVDDGDDE------------------R-----------HRALAAILEAL   63 (480)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCE---EEEEeCCchh------------------h-----------hHHHHHHHHHc
Confidence            35899999999999999999999987   9999876100                  0           01234556778


Q ss_pred             CcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhc-CCC
Q 013952           85 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAK-KNG  163 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~-~~~  163 (433)
                      |+++..+..+.              ....+|.+|+++|..|..|.   +......++-.....+-   +....... +.+
T Consensus        64 gv~~~~~~~~~--------------~~~~~D~Vv~s~Gi~~~~~~---~~~a~~~gi~v~~~~e~---~~~~~~~~~~~~  123 (480)
T PRK01438         64 GATVRLGPGPT--------------LPEDTDLVVTSPGWRPDAPL---LAAAADAGIPVWGEVEL---AWRLRDPDRPAP  123 (480)
T ss_pred             CCEEEECCCcc--------------ccCCCCEEEECCCcCCCCHH---HHHHHHCCCeecchHHH---HHHhhhccCCCC
Confidence            99988774332              12458999999999887664   22222222222222221   11222110 123


Q ss_pred             cEEEECCC---HHHHHHHHHHHhCCCeEEEE
Q 013952          164 KAVVVGGG---YIGLELSAALKINNIDVSMV  191 (433)
Q Consensus       164 ~v~ViG~G---~~g~e~a~~l~~~g~~V~li  191 (433)
                      .+.|-|+.   -+.-.++..|...|.++...
T Consensus       124 ~I~VTGTnGKTTTt~mi~~iL~~~g~~~~~~  154 (480)
T PRK01438        124 WLAVTGTNGKTTTVQMLASMLRAAGLRAAAV  154 (480)
T ss_pred             EEEEeCCCcHHHHHHHHHHHHHHcCCCeEEE
Confidence            56666642   34456667777777766554

>PRK06185 hypothetical protein; Provisional

Probab=97.67  E-value=0.00076  Score=65.37  Aligned_cols=101  Identities=23%  Similarity=0.332  Sum_probs=71.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCC----CC-----------------------------------
Q 013952          162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----LF-----------------------------------  202 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~----~~-----------------------------------  202 (433)
                      ...|+|||+|++|+-+|..|++.|.+|+++++.+.....    .+                                   
T Consensus         6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~~~   85 (407)
T PRK06185          6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIGGR   85 (407)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEECCe
Confidence            458999999999999999999999999999875321000    00                                   


Q ss_pred             ---------------------CHHHHHHHHHHHHh-cCcEEEcCCeEEEEEecCCCcEEEEE--eCCCc-EEECCEEEEc
Q 013952          203 ---------------------TADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVK--LKDGR-TLEADIVVVG  257 (433)
Q Consensus       203 ---------------------~~~~~~~l~~~l~~-~GV~v~~~~~v~~i~~~~~g~~~~v~--~~~g~-~i~~d~vi~a  257 (433)
                                           ...+.+.+.+.+++ .|++++.++++.++.. +++.+..+.  ..+|+ ++.+|.||.|
T Consensus        86 ~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~-~~~~v~~v~~~~~~g~~~i~a~~vI~A  164 (407)
T PRK06185         86 TVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIE-EGGRVTGVRARTPDGPGEIRADLVVGA  164 (407)
T ss_pred             EEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEE-eCCEEEEEEEEcCCCcEEEEeCEEEEC
Confidence                                 01233444444544 4899999999999986 345444343  34564 7999999999


Q ss_pred             ccCccC
Q 013952          258 VGGRPL  263 (433)
Q Consensus       258 ~G~~p~  263 (433)
                      .|....
T Consensus       165 dG~~S~  170 (407)
T PRK06185        165 DGRHSR  170 (407)
T ss_pred             CCCchH
Confidence            997654

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=97.66  E-value=0.00058  Score=73.34  Aligned_cols=101  Identities=24%  Similarity=0.238  Sum_probs=70.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCC----------CCHHHHHHHHHHHHhc-CcEEEcCCeEEEE
Q 013952          162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL----------FTADIAAFYEGYYANK-GIKIIKGTVAVGF  230 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~----------~~~~~~~~l~~~l~~~-GV~v~~~~~v~~i  230 (433)
                      ...|+|||+|+.|+.+|..+++.|.+|++++..+.+....          -..++...+.+.+++. +|+++.+++|..+
T Consensus       163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~~i  242 (985)
T TIGR01372       163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTLLPRTTAFGY  242 (985)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEEEcCCEEEEE
Confidence            4689999999999999999999999999998765432111          1134444555566655 5999999999887


Q ss_pred             EecCCCcEEEEEe---------C---CC--cEEECCEEEEcccCccCh
Q 013952          231 TTNADGEVKEVKL---------K---DG--RTLEADIVVVGVGGRPLI  264 (433)
Q Consensus       231 ~~~~~g~~~~v~~---------~---~g--~~i~~d~vi~a~G~~p~~  264 (433)
                      ..  ++.+..+..         .   .+  .++.+|.||+|||.+|..
T Consensus       243 ~~--~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~  288 (985)
T TIGR01372       243 YD--HNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERP  288 (985)
T ss_pred             ec--CCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcC
Confidence            53  222221210         0   01  268999999999987754

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.65  E-value=0.0012  Score=63.69  Aligned_cols=137  Identities=23%  Similarity=0.232  Sum_probs=91.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC----------------------------------------CCC
Q 013952          162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM----------------------------------------PRL  201 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~----------------------------------------~~~  201 (433)
                      .++++|||+|++|+-.|..|.+.|.+++++++.+.+.                                        +.+
T Consensus         6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~~   85 (448)
T KOG1399|consen    6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPRY   85 (448)
T ss_pred             CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCccc
Confidence            6899999999999999999999999999988764321                                        000


Q ss_pred             -CC-HHHHHHHHHHHHhcCc--EEEcCCeEEEEEecCCCcEEEEEeCCC----cEEECCEEEEcccCc--cChhhhhcc-
Q 013952          202 -FT-ADIAAFYEGYYANKGI--KIIKGTVAVGFTTNADGEVKEVKLKDG----RTLEADIVVVGVGGR--PLISLFKGQ-  270 (433)
Q Consensus       202 -~~-~~~~~~l~~~l~~~GV--~v~~~~~v~~i~~~~~g~~~~v~~~~g----~~i~~d~vi~a~G~~--p~~~~~~~~-  270 (433)
                       -+ .++.++|+..+++.++  .+.+++++.++....+ ..+.|.+.++    ++..+|.|++|+|-.  |+....... 
T Consensus        86 ~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~-gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~g~~  164 (448)
T KOG1399|consen   86 FPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDK-GKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIPGPG  164 (448)
T ss_pred             CCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccC-CceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCCCCc
Confidence             01 1677788888888876  5777888888876322 2466766544    467899999999954  666554332 


Q ss_pred             cccCCCcEE-eCCCCCC---CCCCeEEcCcccc
Q 013952          271 VAENKGGIE-TDDFFKT---SADDVYAVGDVAT  299 (433)
Q Consensus       271 ~~~~~g~i~-vd~~~~t---~~~~vfa~Gd~~~  299 (433)
                      ++.=.|.+. .-++-..   ....|.++|--.+
T Consensus       165 ~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~S  197 (448)
T KOG1399|consen  165 IESFKGKIIHSHDYKSPEKFRDKVVLVVGCGNS  197 (448)
T ss_pred             hhhcCCcceehhhccCcccccCceEEEECCCcc
Confidence            222223222 2222211   4578888885443

>PLN02985 squalene monooxygenase

Probab=97.62  E-value=6.7e-05  Score=74.40  Aligned_cols=34  Identities=26%  Similarity=0.503  Sum_probs=31.9

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ..+||+|||||++|+++|..|++.|++   |+|+|+.
T Consensus        42 ~~~DViIVGAG~aGlalA~aLa~~G~~---V~vlEr~   75 (514)
T PLN02985         42 GATDVIIVGAGVGGSALAYALAKDGRR---VHVIERD   75 (514)
T ss_pred             CCceEEEECCCHHHHHHHHHHHHcCCe---EEEEECc
Confidence            468999999999999999999999987   9999998

>PRK09897 hypothetical protein; Provisional

Probab=97.62  E-value=0.0012  Score=65.43  Aligned_cols=98  Identities=11%  Similarity=0.088  Sum_probs=65.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCC--CeEEEEccCCccCCC----------------------------------------
Q 013952          163 GKAVVVGGGYIGLELSAALKINN--IDVSMVYPEPWCMPR----------------------------------------  200 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g--~~V~li~~~~~~~~~----------------------------------------  200 (433)
                      ++|+|||+|+.|+-++..|.+.+  .+|+++++...+...                                        
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~   81 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL   81 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence            47999999999999999998765  378998875322100                                        


Q ss_pred             --------------C-----CCHHHHHH---HHHHHHhcC--cEEEcCCeEEEEEecCCCcEEEEEeCC-CcEEECCEEE
Q 013952          201 --------------L-----FTADIAAF---YEGYYANKG--IKIIKGTVAVGFTTNADGEVKEVKLKD-GRTLEADIVV  255 (433)
Q Consensus       201 --------------~-----~~~~~~~~---l~~~l~~~G--V~v~~~~~v~~i~~~~~g~~~~v~~~~-g~~i~~d~vi  255 (433)
                                    +     +...+.+.   +.+.+.+.|  +.++.+++|+++...+++  ..+.+.+ +..+.+|.||
T Consensus        82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g--~~V~t~~gg~~i~aD~VV  159 (534)
T PRK09897         82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAG--VMLATNQDLPSETFDLAV  159 (534)
T ss_pred             HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCE--EEEEECCCCeEEEcCEEE
Confidence                          0     00011111   222334455  788889999999873333  5677655 4679999999


Q ss_pred             EcccCcc
Q 013952          256 VGVGGRP  262 (433)
Q Consensus       256 ~a~G~~p  262 (433)
                      +|+|..+
T Consensus       160 LAtGh~~  166 (534)
T PRK09897        160 IATGHVW  166 (534)
T ss_pred             ECCCCCC
Confidence            9999644

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=97.62  E-value=0.001  Score=64.08  Aligned_cols=100  Identities=30%  Similarity=0.328  Sum_probs=72.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC--------------------------------------CC--
Q 013952          162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP--------------------------------------RL--  201 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~--------------------------------------~~--  201 (433)
                      ...|+|||+|+.|+-+|..|++.|.+|+++++.+....                                      ..  
T Consensus         7 ~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g~~   86 (388)
T PRK07494          7 HTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATGRL   86 (388)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCCCC
Confidence            34799999999999999999999999999987632100                                      00  


Q ss_pred             -------C---------------CHHHHHHHHHHHHhc-CcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcc
Q 013952          202 -------F---------------TADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGV  258 (433)
Q Consensus       202 -------~---------------~~~~~~~l~~~l~~~-GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~  258 (433)
                             +               ...+.+.+.+.+++. ++. +++++|.+++.++++  ..+++.+|+++.+|.||.|.
T Consensus        87 ~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~~vI~Ad  163 (388)
T PRK07494         87 IRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT-RFGDEAESVRPREDE--VTVTLADGTTLSARLVVGAD  163 (388)
T ss_pred             CCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE-EECCeeEEEEEcCCe--EEEEECCCCEEEEeEEEEec
Confidence                   0               012334445555554 466 789999999763333  45778888899999999999


Q ss_pred             cCccCh
Q 013952          259 GGRPLI  264 (433)
Q Consensus       259 G~~p~~  264 (433)
                      |.....
T Consensus       164 G~~S~v  169 (388)
T PRK07494        164 GRNSPV  169 (388)
T ss_pred             CCCchh
Confidence            986543

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=97.62  E-value=4.9e-05  Score=73.90  Aligned_cols=95  Identities=21%  Similarity=0.337  Sum_probs=26.5

Q ss_pred             EEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC-----------C---------------------------------
Q 013952          165 AVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP-----------R---------------------------------  200 (433)
Q Consensus       165 v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~-----------~---------------------------------  200 (433)
                      |+|||+|+.|+-+|..+++.|.+|.++++.+.+..           .                                 
T Consensus         2 VVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~~   81 (428)
T PF12831_consen    2 VVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYGW   81 (428)
T ss_dssp             EEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST--------------
T ss_pred             EEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhccccccccccc
Confidence            79999999999999999999999999998754210           0                                 


Q ss_pred             ----CCCH-HHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCC---CcEEECCEEEEcccC
Q 013952          201 ----LFTA-DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD---GRTLEADIVVVGVGG  260 (433)
Q Consensus       201 ----~~~~-~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~---g~~i~~d~vi~a~G~  260 (433)
                          .+++ .....+.+.+++.||++++++.+.++.. +++++.+|.+.+   ..++.|+.+|-|||.
T Consensus        82 ~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~-~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~  148 (428)
T PF12831_consen   82 VSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIR-DGGRITGVIVETKSGRKEIRAKVFIDATGD  148 (428)
T ss_dssp             --------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence                0111 1223455667788999999999999987 466888888865   467999999999994

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.58  E-value=0.0013  Score=63.54  Aligned_cols=100  Identities=20%  Similarity=0.306  Sum_probs=71.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHhC---CCeEEEEccCCcc---CCCC------CC---------------------------
Q 013952          163 GKAVVVGGGYIGLELSAALKIN---NIDVSMVYPEPWC---MPRL------FT---------------------------  203 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~---g~~V~li~~~~~~---~~~~------~~---------------------------  203 (433)
                      .+|+|||+|+.|+-+|..|++.   |.+|+++++....   .+..      +.                           
T Consensus         4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~   83 (395)
T PRK05732          4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITHIH   83 (395)
T ss_pred             CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccEEE
Confidence            4799999999999999999998   9999999983100   0000      00                           


Q ss_pred             ----------------------------HHHHHHHHHHHHh-cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEE
Q 013952          204 ----------------------------ADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIV  254 (433)
Q Consensus       204 ----------------------------~~~~~~l~~~l~~-~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~v  254 (433)
                                                  .++.+.+.+.+++ .|+++++++++.++...+++  ..+.+.+|..+.+|.|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~~v  161 (395)
T PRK05732         84 VSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGS--VRVTLDDGETLTGRLL  161 (395)
T ss_pred             EecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCe--EEEEECCCCEEEeCEE
Confidence                                        0122334444444 58999999999999763332  4577888888999999


Q ss_pred             EEcccCccCh
Q 013952          255 VVGVGGRPLI  264 (433)
Q Consensus       255 i~a~G~~p~~  264 (433)
                      |.|.|.....
T Consensus       162 I~AdG~~S~v  171 (395)
T PRK05732        162 VAADGSHSAL  171 (395)
T ss_pred             EEecCCChhh
Confidence            9999987643

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=97.58  E-value=0.00015  Score=67.86  Aligned_cols=34  Identities=24%  Similarity=0.501  Sum_probs=30.7

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ..|||||||||.||.-||..+++.|.+   -+++..+
T Consensus        27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~---TlLlT~~   60 (679)
T KOG2311|consen   27 STYDVVVIGGGHAGCEAAAAAARLGAR---TLLLTHN   60 (679)
T ss_pred             CcccEEEECCCccchHHHHHHHhcCCc---eEEeecc
Confidence            368999999999999999999999987   7888877

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=97.57  E-value=0.00066  Score=57.38  Aligned_cols=97  Identities=14%  Similarity=0.143  Sum_probs=73.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEE--------------------EccCCccCCCCCCHHHHHHHHHHHHhcCcEE
Q 013952          162 NGKAVVVGGGYIGLELSAALKINNIDVSM--------------------VYPEPWCMPRLFTADIAAFYEGYYANKGIKI  221 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~l--------------------i~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v  221 (433)
                      ..+++|||+|+.+.-.|.++++...+-.+                    ++..|.+......+++.+.+++..++.|-++
T Consensus         8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~i   87 (322)
T KOG0404|consen    8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTEI   87 (322)
T ss_pred             eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhccee
Confidence            35899999999999999998877543333                    3344555555567899999999999999999


Q ss_pred             EcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013952          222 IKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP  262 (433)
Q Consensus       222 ~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p  262 (433)
                      +.. .|.+++.  ..+...+.++. +.+.+|.||+|||...
T Consensus        88 ~tE-tVskv~~--sskpF~l~td~-~~v~~~avI~atGAsA  124 (322)
T KOG0404|consen   88 ITE-TVSKVDL--SSKPFKLWTDA-RPVTADAVILATGASA  124 (322)
T ss_pred             eee-ehhhccc--cCCCeEEEecC-CceeeeeEEEecccce
Confidence            876 4677766  44555666544 4799999999999644

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=97.56  E-value=9.3e-05  Score=70.19  Aligned_cols=32  Identities=25%  Similarity=0.418  Sum_probs=30.3

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      .||+|||||++|+.+|..|++.|++   |+|+|+.
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~Gl~---V~LiE~r   34 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRGVP---VELYEMR   34 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCc---EEEEEcc
Confidence            5999999999999999999999998   9999976

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=97.56  E-value=0.00049  Score=65.49  Aligned_cols=94  Identities=21%  Similarity=0.300  Sum_probs=63.5

Q ss_pred             cEEEECCCHHHHHHHHHHHhC--CCeEEEEccCCccCCC----C----CCHHHH--------------------------
Q 013952          164 KAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPWCMPR----L----FTADIA--------------------------  207 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~--g~~V~li~~~~~~~~~----~----~~~~~~--------------------------  207 (433)
                      .++|||+|+.|+.+|..|.+.  |.+|.++++.+...+.    +    .++...                          
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~   80 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK   80 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence            379999999999999999987  9999999887632210    1    111110                          


Q ss_pred             --------HHHHHH-HHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccC
Q 013952          208 --------AFYEGY-YANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL  263 (433)
Q Consensus       208 --------~~l~~~-l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~  263 (433)
                              ..+.+. +++.+..++++++|.++..  ++    +.+.+|+++.+|.||.|.|.++.
T Consensus        81 ~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~--~~----v~l~dg~~~~A~~VI~A~G~~s~  139 (370)
T TIGR01789        81 TAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDA--DG----VDLAPGTRINARSVIDCRGFKPS  139 (370)
T ss_pred             CCceEEEHHHHHHHHHHhhcccEEecCEEEEEeC--CE----EEECCCCEEEeeEEEECCCCCCC
Confidence                    011122 2222444777888888843  32    55578889999999999997764

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=97.55  E-value=0.0012  Score=64.47  Aligned_cols=102  Identities=23%  Similarity=0.341  Sum_probs=73.9

Q ss_pred             cEEEECCCHHHHHHHHHHHh----CCCeEEEEccCC--ccC------------CCC--CC--------------------
Q 013952          164 KAVVVGGGYIGLELSAALKI----NNIDVSMVYPEP--WCM------------PRL--FT--------------------  203 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~----~g~~V~li~~~~--~~~------------~~~--~~--------------------  203 (433)
                      .|+|||+|+.|+-+|..|++    .|.+|+++++.+  ...            .+.  +.                    
T Consensus         2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~~   81 (437)
T TIGR01989         2 DVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSDR   81 (437)
T ss_pred             cEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhhc
Confidence            58999999999999999998    799999998732  110            000  00                    


Q ss_pred             -----------------------------------HHHHHHHHHHHHhcC---cEEEcCCeEEEEEec-----CCCcEEE
Q 013952          204 -----------------------------------ADIAAFYEGYYANKG---IKIIKGTVAVGFTTN-----ADGEVKE  240 (433)
Q Consensus       204 -----------------------------------~~~~~~l~~~l~~~G---V~v~~~~~v~~i~~~-----~~g~~~~  240 (433)
                                                         ..+.+.+.+.+++.+   +++++++++.+++..     +++....
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~  161 (437)
T TIGR01989        82 IQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVH  161 (437)
T ss_pred             CCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceE
Confidence                                               123344555566654   999999999999741     2233457


Q ss_pred             EEeCCCcEEECCEEEEcccCccChh
Q 013952          241 VKLKDGRTLEADIVVVGVGGRPLIS  265 (433)
Q Consensus       241 v~~~~g~~i~~d~vi~a~G~~p~~~  265 (433)
                      +.+.+|+++.+|+||-|-|......
T Consensus       162 v~~~~g~~i~a~llVgADG~~S~vR  186 (437)
T TIGR01989       162 ITLSDGQVLYTKLLIGADGSNSNVR  186 (437)
T ss_pred             EEEcCCCEEEeeEEEEecCCCChhH
Confidence            8888999999999999999876554

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=97.53  E-value=9.8e-05  Score=69.73  Aligned_cols=32  Identities=28%  Similarity=0.541  Sum_probs=30.0

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      +||+|||||++|+++|..|++.|.+   |+|+|++
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~G~~---V~viEk~   33 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQLNKR---VLVVEKR   33 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCe---EEEEecC
Confidence            5999999999999999999998876   9999997

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=97.53  E-value=0.00069  Score=65.81  Aligned_cols=99  Identities=19%  Similarity=0.263  Sum_probs=68.6

Q ss_pred             cEEEECCCHHHHHHHHHHHhCC-CeEEEEccCCccCCCC----CCH-------------H--------------------
Q 013952          164 KAVVVGGGYIGLELSAALKINN-IDVSMVYPEPWCMPRL----FTA-------------D--------------------  205 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g-~~V~li~~~~~~~~~~----~~~-------------~--------------------  205 (433)
                      +|+|||+|+.|+-+|..|.+.| .+|+++++.+.+....    +.+             .                    
T Consensus         2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~   81 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEWR   81 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEEE
Confidence            6999999999999999999998 5999998865431100    000             0                    


Q ss_pred             --------------------H-HHHHHHHHHh--cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013952          206 --------------------I-AAFYEGYYAN--KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP  262 (433)
Q Consensus       206 --------------------~-~~~l~~~l~~--~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p  262 (433)
                                          + ...+.+.|.+  ..+.++++++|.+++.++++  ..+.+.+|.++++|.||.|.|.+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~--~~v~~~~g~~~~ad~vVgADG~~S  159 (414)
T TIGR03219        82 NGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPEGIASFGKRATQIEEQAEE--VQVLFTDGTEYRCDLLIGADGIKS  159 (414)
T ss_pred             ecCccceeeeeccccCCcccCCHHHHHHHHHHhCCCceEEcCCEEEEEEecCCc--EEEEEcCCCEEEeeEEEECCCccH
Confidence                                0 0112222221  14567889999999874333  578888998999999999999765


Q ss_pred             Ch
Q 013952          263 LI  264 (433)
Q Consensus       263 ~~  264 (433)
                      ..
T Consensus       160 ~v  161 (414)
T TIGR03219       160 AL  161 (414)
T ss_pred             HH
Confidence            43

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.52  E-value=9.7e-05  Score=74.68  Aligned_cols=55  Identities=16%  Similarity=0.038  Sum_probs=39.8

Q ss_pred             CCCcEEeCCCCCCCCCCeEEcCccccccccccCcccc-cccHHHHHHHHHHHHHHHhcc
Q 013952          274 NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRR-VEHVDHARKSAEQAVKTIMAT  331 (433)
Q Consensus       274 ~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~-~~~~~~A~~~g~~aa~~i~~~  331 (433)
                      ..|+|.||.+.+|++|++||+|+|+...   +|..+. -.+...+.-.|++|++++...
T Consensus       354 ~~GGi~vd~~~~t~I~GLyAaGE~~~g~---hGanrlggnsl~~~lv~Gr~Ag~~aa~~  409 (589)
T PRK08641        354 SMGGLWVDYDQMTNIPGLFAAGECDYSY---HGANRLGANSLLSAIYGGMVAGPNAVEY  409 (589)
T ss_pred             eCCCeEECCCCCeECCCEEECcccccCC---CCCCccchhhHHHHHHHHHHHHHHHHHH
Confidence            5699999999999999999999997543   222211 134566777788888877643

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=97.52  E-value=0.0014  Score=62.55  Aligned_cols=96  Identities=28%  Similarity=0.353  Sum_probs=70.5

Q ss_pred             EEEECCCHHHHHHHHHH--HhCCCeEEEEccCCcc--CCCC----C----------------------------------
Q 013952          165 AVVVGGGYIGLELSAAL--KINNIDVSMVYPEPWC--MPRL----F----------------------------------  202 (433)
Q Consensus       165 v~ViG~G~~g~e~a~~l--~~~g~~V~li~~~~~~--~~~~----~----------------------------------  202 (433)
                      |+|||+|+.|+-+|..|  .+.|.+|.++++.+..  ....    .                                  
T Consensus         2 viIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~Y   81 (374)
T PF05834_consen    2 VIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYPY   81 (374)
T ss_pred             EEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccce
Confidence            79999999999999999  7889999999876543  1100    0                                  


Q ss_pred             ----CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccC
Q 013952          203 ----TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL  263 (433)
Q Consensus       203 ----~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~  263 (433)
                          ..++.+.+.+.+++.|+ .+.+..|.+|+..++  ...+.+++|+++.|+.||-|.|..+.
T Consensus        82 ~~i~~~~f~~~l~~~~~~~~~-~~~~~~V~~i~~~~~--~~~v~~~~g~~i~a~~VvDa~g~~~~  143 (374)
T PF05834_consen   82 CMIDRADFYEFLLERAAAGGV-IRLNARVTSIEETGD--GVLVVLADGRTIRARVVVDARGPSSP  143 (374)
T ss_pred             EEEEHHHHHHHHHHHhhhCCe-EEEccEEEEEEecCc--eEEEEECCCCEEEeeEEEECCCcccc
Confidence                01344555566664454 567789999987333  45678899999999999999996544

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PRK02106 choline dehydrogenase; Validated

Probab=97.52  E-value=0.00011  Score=74.23  Aligned_cols=37  Identities=19%  Similarity=0.478  Sum_probs=34.8

Q ss_pred             CCCCcCeEEEECCCHHHHHHHHHHHH-cCCCCCcEEEEcCC
Q 013952            1 MAEKSFKYVILGGGVSAGYAAREFAK-QGVKPGELAIISKE   40 (433)
Q Consensus         1 Mm~~~~dvvIIGgG~aGl~aA~~l~~-~g~~~~~V~lie~~   40 (433)
                      ||...||+||||||.+|+.+|.+|++ .|++   |+|||+.
T Consensus         1 ~~~~~~D~iIVG~G~aG~vvA~rLae~~g~~---VlvlEaG   38 (560)
T PRK02106          1 MTTMEYDYIIIGAGSAGCVLANRLSEDPDVS---VLLLEAG   38 (560)
T ss_pred             CCCCcCcEEEECCcHHHHHHHHHHHhCCCCe---EEEecCC
Confidence            78888999999999999999999999 6877   9999999

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=97.52  E-value=0.0001  Score=74.05  Aligned_cols=35  Identities=23%  Similarity=0.455  Sum_probs=32.5

Q ss_pred             CCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         3 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ..++||||||+|.|||+||.++++.|.+   |+|||+.
T Consensus         2 ~~~~DVvVVG~G~AGl~AAl~Aa~~G~~---VivlEK~   36 (549)
T PRK12834          2 AMDADVIVVGAGLAGLVAAAELADAGKR---VLLLDQE   36 (549)
T ss_pred             CccCCEEEECcCHHHHHHHHHHHHCCCe---EEEEeCC
Confidence            3578999999999999999999999987   9999998

>PRK06996 hypothetical protein; Provisional

Probab=97.52  E-value=0.0015  Score=63.17  Aligned_cols=98  Identities=22%  Similarity=0.292  Sum_probs=73.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCC----CeEEEEccCCccCCC-------------------------------------
Q 013952          162 NGKAVVVGGGYIGLELSAALKINN----IDVSMVYPEPWCMPR-------------------------------------  200 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g----~~V~li~~~~~~~~~-------------------------------------  200 (433)
                      ...|+|||+|+.|+-+|..|++.|    .+|+++++.+.....                                     
T Consensus        11 ~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~   90 (398)
T PRK06996         11 DFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHVSQR   90 (398)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEEecC
Confidence            458999999999999999999986    479999875311000                                     


Q ss_pred             -C-------------------C-CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCC---cEEECCEEEE
Q 013952          201 -L-------------------F-TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG---RTLEADIVVV  256 (433)
Q Consensus       201 -~-------------------~-~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g---~~i~~d~vi~  256 (433)
                       .                   . ...+.+.+.+.+++.|++++.++++.+++.+.++  ..+.+.++   +++.+|+||-
T Consensus        91 ~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~--v~v~~~~~~g~~~i~a~lvIg  168 (398)
T PRK06996         91 GHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADG--VTLALGTPQGARTLRARIAVQ  168 (398)
T ss_pred             CCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCe--EEEEECCCCcceEEeeeEEEE
Confidence             0                   0 0245667777888889999999999999764444  45666654   5899999999


Q ss_pred             cccCc
Q 013952          257 GVGGR  261 (433)
Q Consensus       257 a~G~~  261 (433)
                      |-|..
T Consensus       169 ADG~~  173 (398)
T PRK06996        169 AEGGL  173 (398)
T ss_pred             CCCCC
Confidence            99953

>PTZ00367 squalene epoxidase; Provisional

Probab=97.50  E-value=0.00011  Score=73.49  Aligned_cols=34  Identities=24%  Similarity=0.585  Sum_probs=31.7

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ..+||+|||||++|+++|..|++.|++   |+|+|+.
T Consensus        32 ~~~dViIVGaGiaGlalA~aLar~G~~---V~VlEr~   65 (567)
T PTZ00367         32 YDYDVIIVGGSIAGPVLAKALSKQGRK---VLMLERD   65 (567)
T ss_pred             cCccEEEECCCHHHHHHHHHHHhcCCE---EEEEccc
Confidence            358999999999999999999999987   9999987

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=97.49  E-value=0.0018  Score=62.39  Aligned_cols=102  Identities=20%  Similarity=0.225  Sum_probs=72.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC--CC----C-----------------------------------
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM--PR----L-----------------------------------  201 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~--~~----~-----------------------------------  201 (433)
                      .+|+|||+|+.|+-+|..|++.|.+|+++++.+...  ..    .                                   
T Consensus         3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g~   82 (392)
T PRK08243          3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDGR   82 (392)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECCE
Confidence            479999999999999999999999999998765310  00    0                                   


Q ss_pred             -----C-------------CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe-CCCc--EEECCEEEEcccC
Q 013952          202 -----F-------------TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL-KDGR--TLEADIVVVGVGG  260 (433)
Q Consensus       202 -----~-------------~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~-~~g~--~i~~d~vi~a~G~  260 (433)
                           +             ...+.+.+.+...+.|+++++++++.+++.. ++....|++ .+|+  ++.+|+||-|-|.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~-~~~~~~V~~~~~G~~~~i~ad~vVgADG~  161 (392)
T PRK08243         83 RHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDF-DSDRPYVTYEKDGEEHRLDCDFIAGCDGF  161 (392)
T ss_pred             EEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEec-CCCceEEEEEcCCeEEEEEeCEEEECCCC
Confidence                 0             0122334444556789999999999988751 222234555 4563  6899999999997


Q ss_pred             ccChh
Q 013952          261 RPLIS  265 (433)
Q Consensus       261 ~p~~~  265 (433)
                      +....
T Consensus       162 ~S~vR  166 (392)
T PRK08243        162 HGVSR  166 (392)
T ss_pred             CCchh
Confidence            76543

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=97.48  E-value=0.00033  Score=70.72  Aligned_cols=91  Identities=21%  Similarity=0.245  Sum_probs=66.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC-------C-CCCCHHHHHHHHHHHHhcCcEEEcCCeE-EEEE
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------P-RLFTADIAAFYEGYYANKGIKIIKGTVA-VGFT  231 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~-------~-~~~~~~~~~~l~~~l~~~GV~v~~~~~v-~~i~  231 (433)
                      .+++|+|||+|++|+.+|..|++.|.+|+++++.+.+.       + ..++.++.+.-.+.+++.|++++.++.+ ..+.
T Consensus       136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~~~  215 (564)
T PRK12771        136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGEDIT  215 (564)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECCcCC
Confidence            57899999999999999999999999999998765431       1 1135566666666778899999988765 3222


Q ss_pred             ecCCCcEEEEEeCCCcEEECCEEEEcccCccC
Q 013952          232 TNADGEVKEVKLKDGRTLEADIVVVGVGGRPL  263 (433)
Q Consensus       232 ~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~  263 (433)
                      .  +.      +    ...+|.||+|+|..+.
T Consensus       216 ~--~~------~----~~~~D~Vi~AtG~~~~  235 (564)
T PRK12771        216 L--EQ------L----EGEFDAVFVAIGAQLG  235 (564)
T ss_pred             H--HH------H----HhhCCEEEEeeCCCCC
Confidence            1  00      1    1248999999997643

>PLN02268 probable polyamine oxidase

Probab=97.46  E-value=0.00013  Score=71.42  Aligned_cols=41  Identities=24%  Similarity=0.362  Sum_probs=34.2

Q ss_pred             CcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013952          218 GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG  260 (433)
Q Consensus       218 GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~  260 (433)
                      +++++++++|++|...+++  ..|++.+|+++.+|.||+|+..
T Consensus       210 ~~~i~~~~~V~~i~~~~~~--v~v~~~~g~~~~ad~VIva~P~  250 (435)
T PLN02268        210 GLDIRLNHRVTKIVRRYNG--VKVTVEDGTTFVADAAIIAVPL  250 (435)
T ss_pred             cCceeCCCeeEEEEEcCCc--EEEEECCCcEEEcCEEEEecCH
Confidence            6789999999999874444  5688888888999999999864

>PRK13984 putative oxidoreductase; Provisional

Probab=97.43  E-value=0.00044  Score=70.56  Aligned_cols=90  Identities=21%  Similarity=0.179  Sum_probs=67.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC-------CC-CCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT  232 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~-------~~-~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~  232 (433)
                      ++++++|||+|+.|+.+|..|.+.|.+|+++++.+...       +. ..+.++.....+.+++.|++++.++.+..-  
T Consensus       282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~~--  359 (604)
T PRK13984        282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNTRVGKD--  359 (604)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCCEeCCc--
Confidence            47889999999999999999999999999998765431       11 134566666667889999999999876321  


Q ss_pred             cCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013952          233 NADGEVKEVKLKDGRTLEADIVVVGVGGR  261 (433)
Q Consensus       233 ~~~g~~~~v~~~~g~~i~~d~vi~a~G~~  261 (433)
                              +...+ ....+|.||+|+|..
T Consensus       360 --------~~~~~-~~~~yD~vilAtGa~  379 (604)
T PRK13984        360 --------IPLEE-LREKHDAVFLSTGFT  379 (604)
T ss_pred             --------CCHHH-HHhcCCEEEEEcCcC
Confidence                    11111 135799999999975

>PRK11445 putative oxidoreductase; Provisional

Probab=97.43  E-value=0.0031  Score=59.76  Aligned_cols=97  Identities=16%  Similarity=0.283  Sum_probs=67.0

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC--------CCCCCH-------------------------------
Q 013952          164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM--------PRLFTA-------------------------------  204 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~--------~~~~~~-------------------------------  204 (433)
                      .|+|||+|+.|+-+|..|++. .+|+++++.+...        ...+.+                               
T Consensus         3 dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~~~   81 (351)
T PRK11445          3 DVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTIDL   81 (351)
T ss_pred             eEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEecc
Confidence            689999999999999999998 9999998765210        000000                               


Q ss_pred             ------------------HHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe-CCCc--EEECCEEEEcccCccC
Q 013952          205 ------------------DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL-KDGR--TLEADIVVVGVGGRPL  263 (433)
Q Consensus       205 ------------------~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~-~~g~--~i~~d~vi~a~G~~p~  263 (433)
                                        ++.+.+.+ ..+.||++++++.+.++...+++  ..+.+ .+|+  ++.+|.||.|.|....
T Consensus        82 ~~~~~~~~~~~~~~i~R~~~~~~L~~-~~~~gv~v~~~~~v~~i~~~~~~--~~v~~~~~g~~~~i~a~~vV~AdG~~S~  158 (351)
T PRK11445         82 ANSLTRNYQRSYINIDRHKFDLWLKS-LIPASVEVYHNSLCRKIWREDDG--YHVIFRADGWEQHITARYLVGADGANSM  158 (351)
T ss_pred             cccchhhcCCCcccccHHHHHHHHHH-HHhcCCEEEcCCEEEEEEEcCCE--EEEEEecCCcEEEEEeCEEEECCCCCcH
Confidence                              11112222 23568999999999999874443  34554 4564  6899999999997654


Q ss_pred             h
Q 013952          264 I  264 (433)
Q Consensus       264 ~  264 (433)
                      .
T Consensus       159 v  159 (351)
T PRK11445        159 V  159 (351)
T ss_pred             H
Confidence            4

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=97.42  E-value=0.00016  Score=72.95  Aligned_cols=34  Identities=24%  Similarity=0.413  Sum_probs=31.7

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      +..+|+|||||++||++|..|++.|++   |+|+|+.
T Consensus        80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~---V~V~Er~  113 (668)
T PLN02927         80 KKSRVLVAGGGIGGLVFALAAKKKGFD---VLVFEKD  113 (668)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhcCCe---EEEEecc
Confidence            357999999999999999999999988   9999987

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=97.42  E-value=0.0024  Score=61.48  Aligned_cols=98  Identities=19%  Similarity=0.366  Sum_probs=67.7

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEccC-CccC--------------------------------CC----------
Q 013952          164 KAVVVGGGYIGLELSAALKINNIDVSMVYPE-PWCM--------------------------------PR----------  200 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~-~~~~--------------------------------~~----------  200 (433)
                      .|+|||+|+.|+-+|..|++.|.+|.++++. +...                                +.          
T Consensus         2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (388)
T TIGR02023         2 DVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTIPS   81 (388)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeeccCC
Confidence            5899999999999999999999999999876 2100                                00          


Q ss_pred             ---C---CC-HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCC------C--cEEECCEEEEcccCccCh
Q 013952          201 ---L---FT-ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD------G--RTLEADIVVVGVGGRPLI  264 (433)
Q Consensus       201 ---~---~~-~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~------g--~~i~~d~vi~a~G~~p~~  264 (433)
                         +   .+ ..+.+.+.+.+.+.|++++.. .++++..++++  ..+.+.+      +  .++.+|.||.|.|.+...
T Consensus        82 ~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~--~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~v  157 (388)
T TIGR02023        82 EDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRDG--VTLTYRTPKKGAGGEKGSVEADVVIGADGANSPV  157 (388)
T ss_pred             CCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCCe--EEEEEEeccccCCCcceEEEeCEEEECCCCCcHH
Confidence               0   00 123345566667789999765 58888763332  3455442      2  479999999999976543

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=97.39  E-value=0.00035  Score=63.80  Aligned_cols=97  Identities=13%  Similarity=0.236  Sum_probs=73.0

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC--CCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHH
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE--VAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK   82 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (433)
                      ..+.+|||||..||-.+--..+.|-+   ||++|-.  ..+...+                        +..+.+...+.
T Consensus       211 Pk~~~viG~G~IGLE~gsV~~rLGse---VT~VEf~~~i~~~mD~------------------------Eisk~~qr~L~  263 (506)
T KOG1335|consen  211 PKKLTVIGAGYIGLEMGSVWSRLGSE---VTVVEFLDQIGGVMDG------------------------EISKAFQRVLQ  263 (506)
T ss_pred             cceEEEEcCceeeeehhhHHHhcCCe---EEEEEehhhhccccCH------------------------HHHHHHHHHHH
Confidence            46899999999999998888898876   9999987  1111101                        11245677888


Q ss_pred             hCCcEEEeCceEEEEECCCC-E--EEeC---CC--cEEecceEEEccCCCcccc
Q 013952           83 EKGIELILSTEIVRADIASK-T--LLSA---TG--LIFKYQILVIATGSTVLRL  128 (433)
Q Consensus        83 ~~~v~~~~~~~v~~i~~~~~-~--v~~~---~~--~~~~~d~lvlAtG~~~~~~  128 (433)
                      +.++.|.+++.|...++... .  |.+.   ++  +++++|.|++++|-+|+..
T Consensus       264 kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~  317 (506)
T KOG1335|consen  264 KQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTE  317 (506)
T ss_pred             hcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCccccc
Confidence            89999999999999887665 3  3332   22  4799999999999998743

>PRK07538 hypothetical protein; Provisional

Probab=97.38  E-value=0.0024  Score=61.95  Aligned_cols=99  Identities=25%  Similarity=0.343  Sum_probs=67.8

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCC-----------------------------------------
Q 013952          164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLF-----------------------------------------  202 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~-----------------------------------------  202 (433)
                      +|+|||+|+.|+-+|..|++.|.+|+++++.+.+.+...                                         
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~~~   81 (413)
T PRK07538          2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQRI   81 (413)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCCEE
Confidence            689999999999999999999999999987643211000                                         


Q ss_pred             -------------------CHHHHHHHHHHHHh-cC-cEEEcCCeEEEEEecCCCcEEEEEeCC-----CcEEECCEEEE
Q 013952          203 -------------------TADIAAFYEGYYAN-KG-IKIIKGTVAVGFTTNADGEVKEVKLKD-----GRTLEADIVVV  256 (433)
Q Consensus       203 -------------------~~~~~~~l~~~l~~-~G-V~v~~~~~v~~i~~~~~g~~~~v~~~~-----g~~i~~d~vi~  256 (433)
                                         -.++.+.+.+.+.+ .| +.+++++++++++.++++.+  +.+.+     ++++.+|+||-
T Consensus        82 ~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~--~~~~~~~~g~~~~~~adlvIg  159 (413)
T PRK07538         82 WSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTV--VFLGDRAGGDLVSVRGDVLIG  159 (413)
T ss_pred             eeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceE--EEEeccCCCccceEEeeEEEE
Confidence                               00122233344433 35 57999999999987555533  33332     24899999999


Q ss_pred             cccCccCh
Q 013952          257 GVGGRPLI  264 (433)
Q Consensus       257 a~G~~p~~  264 (433)
                      |-|.+...
T Consensus       160 ADG~~S~v  167 (413)
T PRK07538        160 ADGIHSAV  167 (413)
T ss_pred             CCCCCHHH
Confidence            99976544

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.37  E-value=0.0014  Score=59.19  Aligned_cols=136  Identities=20%  Similarity=0.226  Sum_probs=94.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEc-cC-Ccc-----------CCCCCCHHHHHHHHHHHHhcCcEEEcCCeE
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVY-PE-PWC-----------MPRLFTADIAAFYEGYYANKGIKIIKGTVA  227 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~-~~-~~~-----------~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v  227 (433)
                      .+-.|+|||+|+.|...|-+.++.|.+.-++. |. ...           .+....+++...+++..++..|+++...+.
T Consensus       210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~qra  289 (520)
T COG3634         210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNLQRA  289 (520)
T ss_pred             CCceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhCCeeccccchhheeccccccchHHHHHHHHHHhhcCchhhhhhhh
Confidence            46689999999999999999999887654432 11 011           112246889999999999999999998888


Q ss_pred             EEEEec-CCCcEEEEEeCCCcEEECCEEEEcccCccChhhhhcccccCCCcEEeCCCCCC---CCCCeEEcCc
Q 013952          228 VGFTTN-ADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKT---SADDVYAVGD  296 (433)
Q Consensus       228 ~~i~~~-~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~~~~~g~i~vd~~~~t---~~~~vfa~Gd  296 (433)
                      +++++. ..+....|++.+|..+++..+|++||.+=+.--.+..-+..+.++.--+||.-   .-++|-++|-
T Consensus       290 ~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArWRn~nvPGE~e~rnKGVayCPHCDGPLF~gK~VAVIGG  362 (520)
T COG3634         290 SKLEPAAVEGGLIEVELANGAVLKARTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIGG  362 (520)
T ss_pred             hcceecCCCCccEEEEecCCceeccceEEEecCcchhcCCCCchHHHhhCCeeeCCCCCCcccCCceEEEECC
Confidence            888762 23556789999999999999999999542211112222233455665566654   3456666653

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=97.37  E-value=0.0013  Score=58.70  Aligned_cols=73  Identities=23%  Similarity=0.302  Sum_probs=52.0

Q ss_pred             CCeEEEEccCCccCCCCCCHHHHHHHHHHHHhc------CcEEEcCCeEEEEEecCCCcEEEEEeCC--C--cEEECCEE
Q 013952          185 NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK------GIKIIKGTVAVGFTTNADGEVKEVKLKD--G--RTLEADIV  254 (433)
Q Consensus       185 g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~------GV~v~~~~~v~~i~~~~~g~~~~v~~~~--g--~~i~~d~v  254 (433)
                      |..|---+|....+|.  ..++...+...+++.      -+++.++++|..|.. .+|++..|+.-|  |  ..+.+|.|
T Consensus       122 GHSvpRTHr~s~plpp--gfei~~~L~~~l~k~as~~pe~~ki~~nskvv~il~-n~gkVsgVeymd~sgek~~~~~~~V  198 (477)
T KOG2404|consen  122 GHSVPRTHRSSGPLPP--GFEIVKALSTRLKKKASENPELVKILLNSKVVDILR-NNGKVSGVEYMDASGEKSKIIGDAV  198 (477)
T ss_pred             CCCCCcccccCCCCCC--chHHHHHHHHHHHHhhhcChHHHhhhhcceeeeeec-CCCeEEEEEEEcCCCCccceecCce
Confidence            4555555677776664  455666665555442      488999999999986 688888887743  3  35889999


Q ss_pred             EEcccC
Q 013952          255 VVGVGG  260 (433)
Q Consensus       255 i~a~G~  260 (433)
                      |+|+|-
T Consensus       199 VlatGG  204 (477)
T KOG2404|consen  199 VLATGG  204 (477)
T ss_pred             EEecCC
Confidence            999994

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=97.36  E-value=0.0036  Score=51.61  Aligned_cols=41  Identities=32%  Similarity=0.498  Sum_probs=31.6

Q ss_pred             CcEEE-cCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013952          218 GIKII-KGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG  260 (433)
Q Consensus       218 GV~v~-~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~  260 (433)
                      ||++. ...+|..+...+++  ..+.+.+|..+.+|.||+|+|.
T Consensus       114 ~i~v~~~~~~V~~i~~~~~~--~~v~~~~g~~~~~d~VvLa~Gh  155 (156)
T PF13454_consen  114 GITVRHVRAEVVDIRRDDDG--YRVVTADGQSIRADAVVLATGH  155 (156)
T ss_pred             CcEEEEEeeEEEEEEEcCCc--EEEEECCCCEEEeCEEEECCCC
Confidence            54443 34588888874444  5788899999999999999995

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=97.36  E-value=0.00061  Score=65.10  Aligned_cols=34  Identities=26%  Similarity=0.301  Sum_probs=31.2

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc
Q 013952          164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC  197 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~  197 (433)
                      +|+|||+|..|+++|..|++.|.+|+++++.+..
T Consensus         2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~   35 (433)
T TIGR00137         2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEK   35 (433)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence            6899999999999999999999999999876654

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PRK06126 hypothetical protein; Provisional

Probab=97.34  E-value=0.0029  Score=63.83  Aligned_cols=100  Identities=25%  Similarity=0.347  Sum_probs=69.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCC-----------------------------------------
Q 013952          162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR-----------------------------------------  200 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~-----------------------------------------  200 (433)
                      ..+|+|||+|+.|+-+|..|++.|.+|+++++.+.....                                         
T Consensus         7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~~~~   86 (545)
T PRK06126          7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAYFTR   86 (545)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceEEec
Confidence            458999999999999999999999999999865321000                                         


Q ss_pred             -------------C----------------------CC-HHHHHHHHHHHHh-cCcEEEcCCeEEEEEecCCCcEEEEEe
Q 013952          201 -------------L----------------------FT-ADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKL  243 (433)
Q Consensus       201 -------------~----------------------~~-~~~~~~l~~~l~~-~GV~v~~~~~v~~i~~~~~g~~~~v~~  243 (433)
                                   .                      .+ ..+.+.+.+.+++ .++++++++++.+++.++++ + .+.+
T Consensus        87 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~-v-~v~~  164 (545)
T PRK06126         87 LTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADG-V-TATV  164 (545)
T ss_pred             CCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCCe-E-EEEE
Confidence                         0                      00 0123334444443 58999999999999874433 2 2333


Q ss_pred             ---CCCc--EEECCEEEEcccCccC
Q 013952          244 ---KDGR--TLEADIVVVGVGGRPL  263 (433)
Q Consensus       244 ---~~g~--~i~~d~vi~a~G~~p~  263 (433)
                         .+|+  ++.+|.||.|.|.+..
T Consensus       165 ~~~~~g~~~~i~ad~vVgADG~~S~  189 (545)
T PRK06126        165 EDLDGGESLTIRADYLVGCDGARSA  189 (545)
T ss_pred             EECCCCcEEEEEEEEEEecCCcchH
Confidence               3453  6899999999997543

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=97.34  E-value=0.00026  Score=66.62  Aligned_cols=35  Identities=26%  Similarity=0.392  Sum_probs=31.3

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ...+|||||||.|||+||.+|.++|..+  ++|+|.+
T Consensus        20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~--~~IlEa~   54 (498)
T KOG0685|consen   20 GNAKIVIIGAGIAGLAAATRLLENGFID--VLILEAS   54 (498)
T ss_pred             CCceEEEECCchHHHHHHHHHHHhCCce--EEEEEec
Confidence            3578999999999999999999888664  9999988

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=97.33  E-value=0.00024  Score=68.00  Aligned_cols=32  Identities=25%  Similarity=0.403  Sum_probs=30.6

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ++|+|+|||.|||+||++|+++|++   |+|+|.+
T Consensus         1 ~rVai~GaG~AgL~~a~~La~~g~~---vt~~ea~   32 (485)
T COG3349           1 MRVAIAGAGLAGLAAAYELADAGYD---VTLYEAR   32 (485)
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCc---eEEEecc
Confidence            3799999999999999999999998   9999999

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=97.32  E-value=0.0002  Score=66.15  Aligned_cols=63  Identities=13%  Similarity=0.226  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHhcCcEEEcCCeEEEEEec-CCCcEEEEEeCC--Cc----EEECCEEEEcccCccChhhh
Q 013952          205 DIAAFYEGYYANKGIKIIKGTVAVGFTTN-ADGEVKEVKLKD--GR----TLEADIVVVGVGGRPLISLF  267 (433)
Q Consensus       205 ~~~~~l~~~l~~~GV~v~~~~~v~~i~~~-~~g~~~~v~~~~--g~----~i~~d~vi~a~G~~p~~~~~  267 (433)
                      .....+...+++.+++++++++|.+|..+ ++++++.|++.+  +.    .+.++.||+|.|.--...++
T Consensus       194 ~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LL  263 (296)
T PF00732_consen  194 AATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLL  263 (296)
T ss_dssp             HHHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHH
T ss_pred             hhhcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhh
Confidence            34556666666669999999999999552 466777777643  33    56789999999965444444

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=97.30  E-value=0.00026  Score=70.57  Aligned_cols=32  Identities=19%  Similarity=0.378  Sum_probs=30.4

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      .+||||||+| +|++||.++++.|.+   |+|||+.
T Consensus         7 ~~DVvVVG~G-aGl~aA~~aa~~G~~---V~vlEk~   38 (513)
T PRK12837          7 EVDVLVAGSG-GGVAGAYTAAREGLS---VALVEAT   38 (513)
T ss_pred             ccCEEEECch-HHHHHHHHHHHCCCc---EEEEecC
Confidence            5799999999 999999999999987   9999998

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=97.30  E-value=0.0035  Score=60.30  Aligned_cols=101  Identities=18%  Similarity=0.240  Sum_probs=69.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC--CC----CCC---------------------------------
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM--PR----LFT---------------------------------  203 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~--~~----~~~---------------------------------  203 (433)
                      .+|+|||+|+.|+-+|..|++.|.+|+++++.+...  ..    .+.                                 
T Consensus         3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~   82 (390)
T TIGR02360         3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFDGQ   82 (390)
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeCCE
Confidence            579999999999999999999999999998765310  00    000                                 


Q ss_pred             --------------------HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC-CCc--EEECCEEEEcccC
Q 013952          204 --------------------ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK-DGR--TLEADIVVVGVGG  260 (433)
Q Consensus       204 --------------------~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~-~g~--~i~~d~vi~a~G~  260 (433)
                                          ..+...+.+.+.+.|+.++++.++..+... ++....|.+. +|+  ++++|+||-|-|.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~-~~~~~~V~~~~~g~~~~i~adlvIGADG~  161 (390)
T TIGR02360        83 RFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDL-AGDRPYVTFERDGERHRLDCDFIAGCDGF  161 (390)
T ss_pred             EEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEec-CCCccEEEEEECCeEEEEEeCEEEECCCC
Confidence                                122234445556678888888887776531 2222356664 664  6899999999997


Q ss_pred             ccCh
Q 013952          261 RPLI  264 (433)
Q Consensus       261 ~p~~  264 (433)
                      +...
T Consensus       162 ~S~V  165 (390)
T TIGR02360       162 HGVS  165 (390)
T ss_pred             chhh
Confidence            6644

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=97.30  E-value=0.00062  Score=70.83  Aligned_cols=34  Identities=26%  Similarity=0.213  Sum_probs=32.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccC
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE  194 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~  194 (433)
                      .+++|+|||+|+.|+.+|..|++.|.+|++++..
T Consensus       382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~  415 (1028)
T PRK06567        382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL  415 (1028)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence            5789999999999999999999999999999864

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=97.27  E-value=0.0007  Score=69.78  Aligned_cols=90  Identities=17%  Similarity=0.194  Sum_probs=70.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC--------CCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP--------RLFTADIAAFYEGYYANKGIKIIKGTVAVGFTT  232 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~--------~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~  232 (433)
                      .+++|.|||+|+.|+-+|..|.+.|..|++.+|.++...        .-+|+.+.++-.+++.+.||+|.+|++|-+-  
T Consensus      1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~-- 1861 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKH-- 1861 (2142)
T ss_pred             cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeecccccc--
Confidence            578999999999999999999999999999999887421        1157788888889999999999999765321  


Q ss_pred             cCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013952          233 NADGEVKEVKLKDGRTLEADIVVVGVGGR  261 (433)
Q Consensus       233 ~~~g~~~~v~~~~g~~i~~d~vi~a~G~~  261 (433)
                              +. -|+-.-+.|.+|+|+|..
T Consensus      1862 --------vs-~d~l~~~~daiv~a~gst 1881 (2142)
T KOG0399|consen 1862 --------VS-LDELKKENDAIVLATGST 1881 (2142)
T ss_pred             --------cc-HHHHhhccCeEEEEeCCC
Confidence                    11 122234578999999953

>TIGR02028 ChlP geranylgeranyl reductase

Probab=97.25  E-value=0.006  Score=58.85  Aligned_cols=100  Identities=22%  Similarity=0.324  Sum_probs=66.3

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC---CC---------------------------------------
Q 013952          164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP---RL---------------------------------------  201 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~---~~---------------------------------------  201 (433)
                      +|+|||+|+.|+-+|..|++.|.+|.++++.+....   ..                                       
T Consensus         2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~~~~   81 (398)
T TIGR02028         2 RVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIGRTL   81 (398)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEeccCC
Confidence            689999999999999999999999999987532100   00                                       


Q ss_pred             --------CC-HHHHHHHHHHHHhcCcEEEcCCeEEEEEec-CCCcEEEEEe--CC-----C--cEEECCEEEEcccCcc
Q 013952          202 --------FT-ADIAAFYEGYYANKGIKIIKGTVAVGFTTN-ADGEVKEVKL--KD-----G--RTLEADIVVVGVGGRP  262 (433)
Q Consensus       202 --------~~-~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~-~~g~~~~v~~--~~-----g--~~i~~d~vi~a~G~~p  262 (433)
                              ++ ..+.+.+.+.+.+.|++++.++ +..+... ..+....|++  .+     |  .++.++.||.|.|..+
T Consensus        82 ~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S  160 (398)
T TIGR02028        82 KEHEYIGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANS  160 (398)
T ss_pred             CCCCceeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcch
Confidence                    00 1222345556677899998775 6666421 1222234442  21     2  4799999999999766


Q ss_pred             Ch
Q 013952          263 LI  264 (433)
Q Consensus       263 ~~  264 (433)
                      ..
T Consensus       161 ~v  162 (398)
T TIGR02028       161 RV  162 (398)
T ss_pred             HH
Confidence            44

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=97.21  E-value=0.0024  Score=63.60  Aligned_cols=102  Identities=24%  Similarity=0.412  Sum_probs=76.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhC---CCeEEEEccCCcc------CCCCC-----CHHHHHHHHHHHHhcCcEEEcCCeE
Q 013952          162 NGKAVVVGGGYIGLELSAALKIN---NIDVSMVYPEPWC------MPRLF-----TADIAAFYEGYYANKGIKIIKGTVA  227 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~---g~~V~li~~~~~~------~~~~~-----~~~~~~~l~~~l~~~GV~v~~~~~v  227 (433)
                      .++++|||.|..|..+...+.+.   -..+|++...++.      +.+.+     -+++.-.-.+.++++||+++.+.++
T Consensus         3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v   82 (793)
T COG1251           3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKV   82 (793)
T ss_pred             ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCee
Confidence            46899999999999888888773   3578887654432      11111     1234444466789999999999999


Q ss_pred             EEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh
Q 013952          228 VGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF  267 (433)
Q Consensus       228 ~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~  267 (433)
                      ..|..  +.  ..|.+++|.++.+|.+|+|||+.|.....
T Consensus        83 ~~idr--~~--k~V~t~~g~~~~YDkLilATGS~pfi~Pi  118 (793)
T COG1251          83 IQIDR--AN--KVVTTDAGRTVSYDKLIIATGSYPFILPI  118 (793)
T ss_pred             EEecc--Cc--ceEEccCCcEeecceeEEecCccccccCC
Confidence            99976  44  46888999999999999999999876543

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=97.20  E-value=0.0028  Score=60.74  Aligned_cols=89  Identities=16%  Similarity=0.153  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHhCCCeEEEEccCCccC--CCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCC---cEEEEEe-CC
Q 013952          172 YIGLELSAALKINNIDVSMVYPEPWCM--PRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG---EVKEVKL-KD  245 (433)
Q Consensus       172 ~~g~e~a~~l~~~g~~V~li~~~~~~~--~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g---~~~~v~~-~~  245 (433)
                      .+++|+-++|.+.=..+.-+..-..+.  +-..-+.+..-+.+.|+++||+|+++++|+.+.-+.++   .+..+.+ .+
T Consensus       173 hSa~E~rRyl~Rf~h~~~~l~~l~~l~~T~YNQyeSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~~  252 (500)
T PF06100_consen  173 HSAVEFRRYLHRFIHEIPGLNDLSGLDRTKYNQYESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQD  252 (500)
T ss_pred             hhHHHHHHHHHHHHHhcCCCCCccccccCccccHHHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEcC
Confidence            367788888776522221111111110  00124678888999999999999999999999763222   2334443 34


Q ss_pred             Cc--EE---ECCEEEEcccC
Q 013952          246 GR--TL---EADIVVVGVGG  260 (433)
Q Consensus       246 g~--~i---~~d~vi~a~G~  260 (433)
                      |+  .+   +-|+|++..|.
T Consensus       253 g~~~~i~l~~~DlV~vT~GS  272 (500)
T PF06100_consen  253 GKEETIDLGPDDLVFVTNGS  272 (500)
T ss_pred             CCeeEEEeCCCCEEEEECCc
Confidence            42  22   35888888885

>PLN02676 polyamine oxidase

Probab=97.20  E-value=0.00045  Score=68.20  Aligned_cols=40  Identities=25%  Similarity=0.317  Sum_probs=34.2

Q ss_pred             cEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013952          219 IKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG  260 (433)
Q Consensus       219 V~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~  260 (433)
                      .+++++++|++|..++++  +.|.+.+|+++.||.||++++.
T Consensus       245 ~~I~l~~~V~~I~~~~~g--V~V~~~~G~~~~a~~VIvtvPl  284 (487)
T PLN02676        245 PRLKLNKVVREISYSKNG--VTVKTEDGSVYRAKYVIVSVSL  284 (487)
T ss_pred             CceecCCEeeEEEEcCCc--EEEEECCCCEEEeCEEEEccCh
Confidence            679999999999885444  5788889989999999999883

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=97.18  E-value=0.0084  Score=55.76  Aligned_cols=116  Identities=22%  Similarity=0.241  Sum_probs=75.9

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--------CCCCccccccCCCCCCCCC-------------
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPY--------ERPALSKAYLFPEGTARLP-------------   63 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~--------~~~~~~~~~~~~~~~~~~~-------------   63 (433)
                      .+||+|||||||||+||..++++|.+   |+|||+...+-        .||.+...........+.|             
T Consensus         3 ~~dviIIGgGpAGlMaA~~aa~~G~~---V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~f   79 (408)
T COG2081           3 RFDVIIIGGGPAGLMAAISAAKAGRR---VLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARF   79 (408)
T ss_pred             cceEEEECCCHHHHHHHHHHhhcCCE---EEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhC
Confidence            68999999999999999999999988   99999982111        1222111110000001111             


Q ss_pred             ------------CcccccC--C----------CCCCCCHhHHHhCCcEEEeCceEEEEECCC--CEEEeCCCcEEecceE
Q 013952           64 ------------GFHVCVG--S----------GGERLLPEWYKEKGIELILSTEIVRADIAS--KTLLSATGLIFKYQIL  117 (433)
Q Consensus        64 ------------~~~~~~~--~----------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~--~~v~~~~~~~~~~d~l  117 (433)
                                  +......  .          +..+.+...+++.||+++..++|.+++.++  ..+.+.+++++.+|.+
T Consensus        80 t~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~l  159 (408)
T COG2081          80 TPEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSL  159 (408)
T ss_pred             CHHHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEE
Confidence                        0000000  0          011223445567899999999999999875  4677888889999999


Q ss_pred             EEccCC
Q 013952          118 VIATGS  123 (433)
Q Consensus       118 vlAtG~  123 (433)
                      |+|||.
T Consensus       160 ilAtGG  165 (408)
T COG2081         160 ILATGG  165 (408)
T ss_pred             EEecCC
Confidence            999994

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=97.17  E-value=0.003  Score=55.27  Aligned_cols=96  Identities=19%  Similarity=0.206  Sum_probs=65.5

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCC-------------------CCHHHHHHHHHH-----------
Q 013952          164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL-------------------FTADIAAFYEGY-----------  213 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~-------------------~~~~~~~~l~~~-----------  213 (433)
                      +++|||+|..|+.+|..|...|.+|++++++.....+.                   -++.+.+.++..           
T Consensus         3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~~   82 (331)
T COG3380           3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVWTP   82 (331)
T ss_pred             cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeeccc
Confidence            68999999999999999999999999998763321110                   011122111111           


Q ss_pred             ------------------------------HHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCC-cEEECCEEEEcccCc
Q 013952          214 ------------------------------YANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG-RTLEADIVVVGVGGR  261 (433)
Q Consensus       214 ------------------------------l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g-~~i~~d~vi~a~G~~  261 (433)
                                                    +-.-..++.++++|+++...  +....+.+++| +...+|.|++++..-
T Consensus        83 ~~~~~~~~~~~~~~d~~pyvg~pgmsalak~LAtdL~V~~~~rVt~v~~~--~~~W~l~~~~g~~~~~~d~vvla~PAP  159 (331)
T COG3380          83 AVWTFTGDGSPPRGDEDPYVGEPGMSALAKFLATDLTVVLETRVTEVART--DNDWTLHTDDGTRHTQFDDVVLAIPAP  159 (331)
T ss_pred             cccccccCCCCCCCCCCccccCcchHHHHHHHhccchhhhhhhhhhheec--CCeeEEEecCCCcccccceEEEecCCC
Confidence                                          11123567788888888773  45578888655 568999999998853

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=97.17  E-value=0.00071  Score=62.87  Aligned_cols=55  Identities=24%  Similarity=0.468  Sum_probs=39.5

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC--CCCCCCC-CccccccCCCCCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE--VAPYERP-ALSKAYLFPEGTA   60 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~--~~~~~~~-~~~~~~~~~~~~~   60 (433)
                      .++|+|+|||.+||++|++|++++. +..|+|+|+.  ...|-+. ....++++...+.
T Consensus        11 ~~~vaVvGGGiSGL~aay~L~r~~p-~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPr   68 (491)
T KOG1276|consen   11 GMTVAVVGGGISGLCAAYYLARLGP-DVTITLFEASPRVGGWIRSDRMQNGFIFEEGPR   68 (491)
T ss_pred             cceEEEECCchhHHHHHHHHHhcCC-CceEEEEecCCcccceeeeccCCCceeeccCCC
Confidence            4799999999999999999999875 5568889998  3444333 3344444444443

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.09  E-value=0.0006  Score=68.59  Aligned_cols=64  Identities=20%  Similarity=0.172  Sum_probs=45.5

Q ss_pred             CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC-CCc--EEECC-EEEEccc-CccChhhh
Q 013952          203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK-DGR--TLEAD-IVVVGVG-GRPLISLF  267 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~-~g~--~i~~d-~vi~a~G-~~p~~~~~  267 (433)
                      ...+...+.+.+++.|+++++++++.++.. +++++.+|... +|+  .+.++ .||+|+| +.-|.++.
T Consensus       207 G~~l~~~l~~~~~~~gv~i~~~~~v~~Li~-~~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~N~em~  275 (557)
T PRK12844        207 GAALIGRMLEAALAAGVPLWTNTPLTELIV-EDGRVVGVVVVRDGREVLIRARRGVLLASGGFGHNAEMR  275 (557)
T ss_pred             cHHHHHHHHHHHHhCCCEEEeCCEEEEEEE-eCCEEEEEEEEECCeEEEEEecceEEEecCCccCCHHHH
Confidence            567777788888888999999999999876 46777777653 332  46774 6888888 44444443

>PRK08401 L-aspartate oxidase; Provisional

Probab=97.09  E-value=0.0065  Score=59.88  Aligned_cols=97  Identities=27%  Similarity=0.371  Sum_probs=67.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC--------------C----------------C-----------
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP--------------R----------------L-----------  201 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~--------------~----------------~-----------  201 (433)
                      ..|+|||+|..|+-+|..+++.|.+|.+++..+....              .                .           
T Consensus         2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~~   81 (466)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVIS   81 (466)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            3689999999999999999999999999876421100              0                0           


Q ss_pred             ------------------------------------CCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCC
Q 013952          202 ------------------------------------FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD  245 (433)
Q Consensus       202 ------------------------------------~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~  245 (433)
                                                          ....+.+.+.+.+++.||+++.+ .+..+.. +++++..+.. +
T Consensus        82 ~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~-~~g~v~Gv~~-~  158 (466)
T PRK08401         82 KSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRG-FAEELAI-KNGKAYGVFL-D  158 (466)
T ss_pred             HHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEe-EeEEEEe-eCCEEEEEEE-C
Confidence                                                00123444555566678888765 6777764 4566666666 4


Q ss_pred             CcEEECCEEEEcccCcc
Q 013952          246 GRTLEADIVVVGVGGRP  262 (433)
Q Consensus       246 g~~i~~d~vi~a~G~~p  262 (433)
                      +..+.++.||+|||...
T Consensus       159 g~~i~a~~VVLATGG~~  175 (466)
T PRK08401        159 GELLKFDATVIATGGFS  175 (466)
T ss_pred             CEEEEeCeEEECCCcCc
Confidence            56799999999999543

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=97.07  E-value=0.0036  Score=58.33  Aligned_cols=104  Identities=20%  Similarity=0.274  Sum_probs=72.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCC----------CHHHHHHHHHHHHhc--CcEEEcCCeEE
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLF----------TADIAAFYEGYYANK--GIKIIKGTVAV  228 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~----------~~~~~~~l~~~l~~~--GV~v~~~~~v~  228 (433)
                      +.++|+|+|+|..|+-+...|-..-.+|+++.+.+.++-..+          -..+.+-+....+..  +++++.. .-.
T Consensus        54 kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~eA-ec~  132 (491)
T KOG2495|consen   54 KKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYLEA-ECT  132 (491)
T ss_pred             CCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhccCCCceEEec-ccE
Confidence            468999999999999999999888899999999877542111          245666666666554  5555533 445


Q ss_pred             EEEecCCCcEEEE--EeCCC----cEEECCEEEEcccCccChhhh
Q 013952          229 GFTTNADGEVKEV--KLKDG----RTLEADIVVVGVGGRPLISLF  267 (433)
Q Consensus       229 ~i~~~~~g~~~~v--~~~~g----~~i~~d~vi~a~G~~p~~~~~  267 (433)
                      .+++  +.+.+.+  .+.++    ..+.+|.+|+|+|..|++.-+
T Consensus       133 ~iDp--~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TFgi  175 (491)
T KOG2495|consen  133 KIDP--DNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTFGI  175 (491)
T ss_pred             eecc--cccEEEEeeeccCCCcceeeecccEEEEeccCCCCCCCC
Confidence            5654  4433333  23344    468999999999999887643

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=97.07  E-value=0.013  Score=59.52  Aligned_cols=35  Identities=31%  Similarity=0.449  Sum_probs=32.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP  195 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~  195 (433)
                      +..+|+|||+|..|+-+|..|++.|.+|+++++.+
T Consensus        80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~  114 (668)
T PLN02927         80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL  114 (668)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence            56799999999999999999999999999998864

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=97.04  E-value=0.0017  Score=61.41  Aligned_cols=73  Identities=21%  Similarity=0.248  Sum_probs=56.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCC------CCCHH------HHHHHHHHHHhcCcEEEcCCeEE
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR------LFTAD------IAAFYEGYYANKGIKIIKGTVAV  228 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~------~~~~~------~~~~l~~~l~~~GV~v~~~~~v~  228 (433)
                      -.++++|||||..|+++|..|++.|.+|++++..+.+..+      .|+..      +...+.+......|++++.++|+
T Consensus       123 v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~hp~i~l~TyaeV~  202 (622)
T COG1148         123 VSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNHPNIELITYAEVE  202 (622)
T ss_pred             hccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhhccCCceeeeeeeeee
Confidence            3579999999999999999999999999999988765432      12221      23344455566789999999999


Q ss_pred             EEEec
Q 013952          229 GFTTN  233 (433)
Q Consensus       229 ~i~~~  233 (433)
                      ++++.
T Consensus       203 ev~G~  207 (622)
T COG1148         203 EVSGS  207 (622)
T ss_pred             eeccc
Confidence            98763

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=97.04  E-value=0.00073  Score=64.59  Aligned_cols=31  Identities=26%  Similarity=0.489  Sum_probs=29.6

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         7 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ||+|||||++|+.+|..|++.|++   |+|+|+.
T Consensus         2 ~VvVIGgGlAGleaA~~LAr~G~~---V~LiE~r   32 (433)
T TIGR00137         2 PVHVIGGGLAGSEAAWQLAQAGVP---VILYEMR   32 (433)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCc---EEEEecc
Confidence            799999999999999999999998   9999976

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PLN02985 squalene monooxygenase

Probab=97.02  E-value=0.01  Score=59.02  Aligned_cols=102  Identities=20%  Similarity=0.250  Sum_probs=67.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCC----------------------------------------
Q 013952          162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL----------------------------------------  201 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~----------------------------------------  201 (433)
                      ...|+|||+|..|+-+|..|++.|.+|+++++.+......                                        
T Consensus        43 ~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v~~~g~  122 (514)
T PLN02985         43 ATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVYKDGK  122 (514)
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcchhhhccCcccccEEEEECCE
Confidence            4589999999999999999999999999998753110000                                        


Q ss_pred             -----C-----------------CHHHHHHHHHHHHhc-CcEEEcCCeEEEEEecCCCcEEEEEe--CCCc--EEECCEE
Q 013952          202 -----F-----------------TADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVKEVKL--KDGR--TLEADIV  254 (433)
Q Consensus       202 -----~-----------------~~~~~~~l~~~l~~~-GV~v~~~~~v~~i~~~~~g~~~~v~~--~~g~--~i~~d~v  254 (433)
                           +                 ..++.+.+.+.+++. +|+++.+ ++.++.. +++.+.+|++  .+|+  ++.+|++
T Consensus       123 ~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~-~~~~v~gV~~~~~dG~~~~~~AdLV  200 (514)
T PLN02985        123 EAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIE-EKGVIKGVTYKNSAGEETTALAPLT  200 (514)
T ss_pred             EEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEE-cCCEEEEEEEEcCCCCEEEEECCEE
Confidence                 0                 012334455555444 6888866 4555544 3454445554  4564  3679999


Q ss_pred             EEcccCccChh
Q 013952          255 VVGVGGRPLIS  265 (433)
Q Consensus       255 i~a~G~~p~~~  265 (433)
                      |.|.|......
T Consensus       201 VgADG~~S~vR  211 (514)
T PLN02985        201 VVCDGCYSNLR  211 (514)
T ss_pred             EECCCCchHHH
Confidence            99999766553

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=97.01  E-value=0.00071  Score=70.70  Aligned_cols=31  Identities=19%  Similarity=0.375  Sum_probs=29.1

Q ss_pred             eEEEECCCHHHHHHHHHHHHc--CCCCCcEEEEcCC
Q 013952            7 KYVILGGGVSAGYAAREFAKQ--GVKPGELAIISKE   40 (433)
Q Consensus         7 dvvIIGgG~aGl~aA~~l~~~--g~~~~~V~lie~~   40 (433)
                      +|+||||||||+++|..|++.  |++   |+|+|+.
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~~---V~vlEr~   34 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAHE---VTVVERN   34 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCe---EEEEecC
Confidence            799999999999999999998  666   9999998

>PLN02529 lysine-specific histone demethylase 1

Probab=97.01  E-value=0.00083  Score=68.80  Aligned_cols=33  Identities=24%  Similarity=0.406  Sum_probs=31.4

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      .+||+|||||++||+||+.|++.|++   |+|+|+.
T Consensus       160 ~~~v~viGaG~aGl~aA~~l~~~g~~---v~v~E~~  192 (738)
T PLN02529        160 EGSVIIVGAGLAGLAAARQLLSFGFK---VVVLEGR  192 (738)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCc---EEEEecC
Confidence            57999999999999999999999997   9999998

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=97.00  E-value=0.014  Score=57.10  Aligned_cols=102  Identities=19%  Similarity=0.271  Sum_probs=67.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC---CC----------CC-------------------------
Q 013952          162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP---RL----------FT-------------------------  203 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~---~~----------~~-------------------------  203 (433)
                      .-.|+|||+|+.|.-+|..|++.|.+|.++++.+....   ..          ++                         
T Consensus        39 ~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~~~~  118 (450)
T PLN00093         39 KLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGK  118 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEEecc
Confidence            35899999999999999999999999999987632100   00          00                         


Q ss_pred             -------------HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCC-CcEEEEEeCC-------C--cEEECCEEEEcccC
Q 013952          204 -------------ADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD-GEVKEVKLKD-------G--RTLEADIVVVGVGG  260 (433)
Q Consensus       204 -------------~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~-g~~~~v~~~~-------g--~~i~~d~vi~a~G~  260 (433)
                                   ..+.+.+.+..++.|++++.+ .+.++....+ +....+.+.+       |  .++.+|.||-|.|.
T Consensus       119 ~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG~  197 (450)
T PLN00093        119 TLKPHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGADGA  197 (450)
T ss_pred             cCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcCCc
Confidence                         012334555667789999865 4667653111 1222344321       2  47999999999997


Q ss_pred             ccCh
Q 013952          261 RPLI  264 (433)
Q Consensus       261 ~p~~  264 (433)
                      ....
T Consensus       198 ~S~v  201 (450)
T PLN00093        198 NSRV  201 (450)
T ss_pred             chHH
Confidence            6543

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=96.99  E-value=0.0022  Score=61.72  Aligned_cols=96  Identities=19%  Similarity=0.228  Sum_probs=66.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc---CC---------------------------------------C
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC---MP---------------------------------------R  200 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~---~~---------------------------------------~  200 (433)
                      -.|+|||+|..|+|+|.+.++.|.++.+++....-   ++                                       .
T Consensus         5 ~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN~   84 (621)
T COG0445           5 YDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLNS   84 (621)
T ss_pred             CceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhccC
Confidence            47899999999999999999999998887643110   00                                       0


Q ss_pred             C-----------CCH-HHHHHHHHHHH-hcCcEEEcCCeEEEEEecCCC-cEEEEEeCCCcEEECCEEEEcccC
Q 013952          201 L-----------FTA-DIAAFYEGYYA-NKGIKIIKGTVAVGFTTNADG-EVKEVKLKDGRTLEADIVVVGVGG  260 (433)
Q Consensus       201 ~-----------~~~-~~~~~l~~~l~-~~GV~v~~~~~v~~i~~~~~g-~~~~v~~~~g~~i~~d~vi~a~G~  260 (433)
                      .           .|. ...+.+++.++ ..++.++.+ .|.++.. +++ ++.+|.+.+|..+.|+.||++||.
T Consensus        85 sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~-~v~dli~-e~~~~v~GV~t~~G~~~~a~aVVlTTGT  156 (621)
T COG0445          85 SKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQG-EVEDLIV-EEGQRVVGVVTADGPEFHAKAVVLTTGT  156 (621)
T ss_pred             CCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHh-hhHHHhh-cCCCeEEEEEeCCCCeeecCEEEEeecc
Confidence            0           000 12334444444 346666654 4566654 344 589999999999999999999995

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=96.98  E-value=0.00088  Score=61.33  Aligned_cols=34  Identities=26%  Similarity=0.509  Sum_probs=31.9

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ..+||||||||.+|-+.|+.|++.|.+   |.|||++
T Consensus        44 ~~~DvIIVGAGV~GsaLa~~L~kdGRr---VhVIERD   77 (509)
T KOG1298|consen   44 GAADVIIVGAGVAGSALAYALAKDGRR---VHVIERD   77 (509)
T ss_pred             CcccEEEECCcchHHHHHHHHhhCCcE---EEEEecc
Confidence            358999999999999999999999987   9999999

>TIGR02462 pyranose_ox pyranose oxidase

Probab=96.97  E-value=0.00083  Score=66.49  Aligned_cols=59  Identities=12%  Similarity=0.236  Sum_probs=42.0

Q ss_pred             HHHHHHHhcCcEEEcCCeEEEEEecCC--CcEEEEEeC---CCc--EEECCEEEEcccCccChhhh
Q 013952          209 FYEGYYANKGIKIIKGTVAVGFTTNAD--GEVKEVKLK---DGR--TLEADIVVVGVGGRPLISLF  267 (433)
Q Consensus       209 ~l~~~l~~~GV~v~~~~~v~~i~~~~~--g~~~~v~~~---~g~--~i~~d~vi~a~G~~p~~~~~  267 (433)
                      .+.+.++..+++++.++.|.+|..+++  +++..|...   +|+  ++.|+.||+|.|..-+..++
T Consensus       219 ~~~~~~~~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIetpRLL  284 (544)
T TIGR02462       219 QPNDDAPSERFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKADVYVLACGAVHNPQIL  284 (544)
T ss_pred             hhhhhccCCCEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECCEEEEccCchhhHHHH
Confidence            333344466699999999999987544  356666443   343  58999999999977666655

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]

Probab=96.94  E-value=0.00024  Score=59.35  Aligned_cols=43  Identities=35%  Similarity=0.294  Sum_probs=33.9

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCc
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPAL   49 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~   49 (433)
                      .||||||+|.+||+||+.+.++. ++.+|++||.+..|....++
T Consensus        77 sDvviVGAGSaGLsAAY~I~~~r-PdlkvaIIE~SVaPGGGaWL  119 (328)
T KOG2960|consen   77 SDVVIVGAGSAGLSAAYVIAKNR-PDLKVAIIESSVAPGGGAWL  119 (328)
T ss_pred             cceEEECCCccccceeeeeeccC-CCceEEEEEeeecCCCcccc
Confidence            59999999999999999999764 46679999999444433333

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=96.90  E-value=0.0012  Score=61.40  Aligned_cols=33  Identities=24%  Similarity=0.490  Sum_probs=31.0

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      +.+|||||||.+|+++|..|.++|.+   |+|+|+.
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r~G~~---v~VlE~~   34 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHRKGID---VVVLESR   34 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCCe---EEEEeec
Confidence            35899999999999999999999998   9999998

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=96.89  E-value=0.0012  Score=68.23  Aligned_cols=33  Identities=24%  Similarity=0.466  Sum_probs=31.2

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ..+|+|||||++|++||+.|.+.|++   |+|+|++
T Consensus       238 ~~~v~IiGaG~aGl~aA~~L~~~g~~---v~v~E~~  270 (808)
T PLN02328        238 PANVVVVGAGLAGLVAARQLLSMGFK---VVVLEGR  270 (808)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCc---EEEEecc
Confidence            57899999999999999999999987   9999998

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=96.88  E-value=0.0014  Score=58.87  Aligned_cols=34  Identities=26%  Similarity=0.483  Sum_probs=32.1

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ..+||||||+|.|||-||.+|+..|++   |+++|.+
T Consensus         4 ~~~dvivvgaglaglvaa~elA~aG~~---V~ildQE   37 (552)
T COG3573           4 LTADVIVVGAGLAGLVAAAELADAGKR---VLILDQE   37 (552)
T ss_pred             ccccEEEECccHHHHHHHHHHHhcCce---EEEEccc
Confidence            468999999999999999999999998   9999988

>PRK07804 L-aspartate oxidase; Provisional

Probab=96.88  E-value=0.016  Score=58.33  Aligned_cols=54  Identities=26%  Similarity=0.404  Sum_probs=39.2

Q ss_pred             HHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC-------CC-cEEECCEEEEcccC
Q 013952          207 AAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK-------DG-RTLEADIVVVGVGG  260 (433)
Q Consensus       207 ~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~-------~g-~~i~~d~vi~a~G~  260 (433)
                      .+.+.+.+++.||+++.++.+.++..++++++.++...       ++ ..+.++.||+|+|.
T Consensus       147 ~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG  208 (541)
T PRK07804        147 QRALDAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGG  208 (541)
T ss_pred             HHHHHHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCC
Confidence            34455566677899999999999876445677776553       22 36899999999995

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=96.86  E-value=0.017  Score=58.54  Aligned_cols=51  Identities=25%  Similarity=0.376  Sum_probs=38.1

Q ss_pred             HHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEECCEEEEcccCc
Q 013952          210 YEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGGR  261 (433)
Q Consensus       210 l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~---~~g~--~i~~d~vi~a~G~~  261 (433)
                      +.+.+++.||+++.++.+.++.. +++++.++..   .+|+  .+.++.||+|+|..
T Consensus       135 L~~~~~~~gv~i~~~~~v~~L~~-~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~  190 (566)
T TIGR01812       135 LYEQCLKLGVSFFNEYFALDLIH-DDGRVRGVVAYDLKTGEIVFFRAKAVVLATGGY  190 (566)
T ss_pred             HHHHHHHcCCEEEeccEEEEEEE-eCCEEEEEEEEECCCCcEEEEECCeEEECCCcc
Confidence            34445667999999999999876 4677766654   3554  58999999999953

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=96.81  E-value=0.002  Score=57.73  Aligned_cols=33  Identities=33%  Similarity=0.589  Sum_probs=31.0

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ++|++|||+|.+|+..|..|+++|.+   |.|||+.
T Consensus         1 ~fd~lIVGaGlsG~V~A~~a~~~gk~---VLIvekR   33 (374)
T COG0562           1 MFDYLIVGAGLSGAVIAEVAAQLGKR---VLIVEKR   33 (374)
T ss_pred             CCcEEEECCchhHHHHHHHHHHcCCE---EEEEecc
Confidence            37999999999999999999999988   9999999

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=96.81  E-value=0.022  Score=56.78  Aligned_cols=33  Identities=18%  Similarity=0.290  Sum_probs=30.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEP  195 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~  195 (433)
                      -.|+|||||.+|+-+|..++++|.+|.++++.+
T Consensus         7 ~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d   39 (508)
T PRK12266          7 YDLLVIGGGINGAGIARDAAGRGLSVLLCEQDD   39 (508)
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            479999999999999999999999999999864

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=96.78  E-value=0.019  Score=57.16  Aligned_cols=32  Identities=19%  Similarity=0.285  Sum_probs=29.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccC
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPE  194 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~  194 (433)
                      -.|+|||||.+|+-+|..|+++|.+|.++++.
T Consensus         7 ~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~   38 (502)
T PRK13369          7 YDLFVIGGGINGAGIARDAAGRGLKVLLCEKD   38 (502)
T ss_pred             cCEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence            37999999999999999999999999999876

>PRK08275 putative oxidoreductase; Provisional

Probab=96.77  E-value=0.027  Score=56.87  Aligned_cols=55  Identities=20%  Similarity=0.257  Sum_probs=41.0

Q ss_pred             HHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEECCEEEEcccCc
Q 013952          207 AAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGGR  261 (433)
Q Consensus       207 ~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~---~~g~--~i~~d~vi~a~G~~  261 (433)
                      .+.+.+.+++.||+++.++.+.++..++++++.++..   .+|+  .+.++.||+|+|..
T Consensus       140 ~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~  199 (554)
T PRK08275        140 KKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAA  199 (554)
T ss_pred             HHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCc
Confidence            3455555677899999999999998743677776653   3554  48899999999964

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=96.75  E-value=0.021  Score=58.50  Aligned_cols=102  Identities=25%  Similarity=0.354  Sum_probs=69.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhC-CCeEEEEccCCccCCC----------------------------------------
Q 013952          162 NGKAVVVGGGYIGLELSAALKIN-NIDVSMVYPEPWCMPR----------------------------------------  200 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~-g~~V~li~~~~~~~~~----------------------------------------  200 (433)
                      .-.|+|||+|+.|+.+|..|++. |.+|+++++.+.....                                        
T Consensus        32 ~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~~  111 (634)
T PRK08294         32 EVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPDP  111 (634)
T ss_pred             CCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCCC
Confidence            35899999999999999999995 9999999866321100                                        


Q ss_pred             -----------C---------C-----C-HHHHHHHHHHHHhcC--cEEEcCCeEEEEEecCCC-cEEEEEeC------C
Q 013952          201 -----------L---------F-----T-ADIAAFYEGYYANKG--IKIIKGTVAVGFTTNADG-EVKEVKLK------D  245 (433)
Q Consensus       201 -----------~---------~-----~-~~~~~~l~~~l~~~G--V~v~~~~~v~~i~~~~~g-~~~~v~~~------~  245 (433)
                                 .         +     . ..+.+.+.+.+++.|  +++.+++++++++.++++ ..+.+++.      +
T Consensus       112 ~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~  191 (634)
T PRK08294        112 ADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHE  191 (634)
T ss_pred             ccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCC
Confidence                       0         0     0 023344555666655  578889999999864322 22345553      3


Q ss_pred             C--cEEECCEEEEcccCccC
Q 013952          246 G--RTLEADIVVVGVGGRPL  263 (433)
Q Consensus       246 g--~~i~~d~vi~a~G~~p~  263 (433)
                      |  +++.||+||-|=|.+..
T Consensus       192 g~~~tv~A~~lVGaDGa~S~  211 (634)
T PRK08294        192 GEEETVRAKYVVGCDGARSR  211 (634)
T ss_pred             CceEEEEeCEEEECCCCchH
Confidence            4  57999999999997543

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=96.70  E-value=0.0015  Score=65.34  Aligned_cols=59  Identities=17%  Similarity=0.271  Sum_probs=43.0

Q ss_pred             HHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC--CC---c-EEECCEEEEcccCccChhhh
Q 013952          208 AFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK--DG---R-TLEADIVVVGVGGRPLISLF  267 (433)
Q Consensus       208 ~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~--~g---~-~i~~d~vi~a~G~~p~~~~~  267 (433)
                      ..+...++..++++.+++.+.++.. +.++...++..  ++   + ...++.||++.|...+..++
T Consensus       207 a~l~~a~~~~nl~v~t~a~v~ri~~-~~~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL  271 (542)
T COG2303         207 AYLKPALKRPNLTLLTGARVRRILL-EGDRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLL  271 (542)
T ss_pred             hcchhHhcCCceEEecCCEEEEEEE-ECCeeEEEEEEeCCCCceEEEecCceEEEeccccCCHHHH
Confidence            3445567788899999999999988 45555566553  33   1 25788999999987777665

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=96.68  E-value=0.031  Score=56.95  Aligned_cols=97  Identities=14%  Similarity=0.195  Sum_probs=66.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHhC--CCeEEEEccCCccCCC---------------CCC-----------------H----
Q 013952          163 GKAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPWCMPR---------------LFT-----------------A----  204 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~--g~~V~li~~~~~~~~~---------------~~~-----------------~----  204 (433)
                      -.|+|||+|..|+-+|..+++.  |.+|.++++.+.....               ..+                 +    
T Consensus        12 ~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~~d~~lv~   91 (608)
T PRK06854         12 TDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGAVAQGLSAINAYIGEGETPEDYVRYVRKDLMGIVREDLVY   91 (608)
T ss_pred             eCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcccccCccccccccccCCCHHHHHHHHHHhccCCCCHHHHH
Confidence            3799999999999999999998  9999998764321000               000                 0    


Q ss_pred             -----------------------------------------HHHHHHHHHHHhcC-cEEEcCCeEEEEEecCCCcEEEEE
Q 013952          205 -----------------------------------------DIAAFYEGYYANKG-IKIIKGTVAVGFTTNADGEVKEVK  242 (433)
Q Consensus       205 -----------------------------------------~~~~~l~~~l~~~G-V~v~~~~~v~~i~~~~~g~~~~v~  242 (433)
                                                               .+.+.+.+.+++.+ |+++.++.+.++.. +++++.++.
T Consensus        92 ~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~g~~~~~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~-~~g~v~Gv~  170 (608)
T PRK06854         92 DIARHVDSVVHLFEEWGLPIWKDENGKYVRRGRWQIMINGESYKPIVAEAAKKALGDNVLNRVFITDLLV-DDNRIAGAV  170 (608)
T ss_pred             HHHHhHHHHHHHHHHcCCeeeecCCCCccccCCccCCCChHHHHHHHHHHHHhcCCCEEEeCCEEEEEEE-eCCEEEEEE
Confidence                                                     11222334455555 99999999999875 356666653


Q ss_pred             ---eCCCc--EEECCEEEEcccC
Q 013952          243 ---LKDGR--TLEADIVVVGVGG  260 (433)
Q Consensus       243 ---~~~g~--~i~~d~vi~a~G~  260 (433)
                         ..+++  .+.++.||+|+|-
T Consensus       171 ~~~~~~g~~~~i~AkaVILATGG  193 (608)
T PRK06854        171 GFSVRENKFYVFKAKAVIVATGG  193 (608)
T ss_pred             EEEccCCcEEEEECCEEEECCCc
Confidence               23453  6899999999993

>PRK06175 L-aspartate oxidase; Provisional

Probab=96.61  E-value=0.029  Score=54.67  Aligned_cols=54  Identities=20%  Similarity=0.335  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHh-cCcEEEcCCeEEEEEecCCCcEEEEE-eCCCc--EEECCEEEEcccC
Q 013952          206 IAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVK-LKDGR--TLEADIVVVGVGG  260 (433)
Q Consensus       206 ~~~~l~~~l~~-~GV~v~~~~~v~~i~~~~~g~~~~v~-~~~g~--~i~~d~vi~a~G~  260 (433)
                      +.+.+.+.+++ .||++++++.+.++.. +++++..+. ..+++  .+.++.||+|+|-
T Consensus       130 l~~~L~~~~~~~~gV~i~~~t~v~~Li~-~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG  187 (433)
T PRK06175        130 VEKILLKKVKKRKNITIIENCYLVDIIE-NDNTCIGAICLKDNKQINIYSKVTILATGG  187 (433)
T ss_pred             HHHHHHHHHHhcCCCEEEECcEeeeeEe-cCCEEEEEEEEECCcEEEEEcCeEEEccCc
Confidence            34445555554 5999999999999876 356666654 33443  5899999999995

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=96.60  E-value=0.03  Score=56.99  Aligned_cols=44  Identities=18%  Similarity=0.297  Sum_probs=34.4

Q ss_pred             cCcEEEcCCeEEEEEecCCCcEEEEEeC---CCc--EEECCEEEEcccC
Q 013952          217 KGIKIIKGTVAVGFTTNADGEVKEVKLK---DGR--TLEADIVVVGVGG  260 (433)
Q Consensus       217 ~GV~v~~~~~v~~i~~~~~g~~~~v~~~---~g~--~i~~d~vi~a~G~  260 (433)
                      .||++++++.+.++..++++++.+|...   +++  .+.++.||+|||-
T Consensus       146 ~gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG  194 (603)
T TIGR01811       146 GLVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGG  194 (603)
T ss_pred             CCcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCC
Confidence            3799999999999876445688887753   343  5889999999995

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.57  E-value=0.034  Score=56.55  Aligned_cols=52  Identities=19%  Similarity=0.286  Sum_probs=38.8

Q ss_pred             HHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEECCEEEEcccC
Q 013952          209 FYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGG  260 (433)
Q Consensus       209 ~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~---~~g~--~i~~d~vi~a~G~  260 (433)
                      .+.+.+++.||++++++.+.++..++++++.++..   .+|+  .+.++.||+|||-
T Consensus       154 ~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG  210 (598)
T PRK09078        154 TLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGG  210 (598)
T ss_pred             HHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCC
Confidence            34445566789999999999987644477888764   3554  6889999999994

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.55  E-value=0.03  Score=56.60  Aligned_cols=51  Identities=12%  Similarity=0.100  Sum_probs=38.3

Q ss_pred             HHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC---CC--cEEECCEEEEcccC
Q 013952          209 FYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK---DG--RTLEADIVVVGVGG  260 (433)
Q Consensus       209 ~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~---~g--~~i~~d~vi~a~G~  260 (433)
                      .+.+.+++.||++++++.+.++.. ++|++.++...   ++  ..+.++.||+|||-
T Consensus       141 ~L~~~~~~~gv~i~~~~~~~~Li~-~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG  196 (566)
T PRK06452        141 TLFERTSGLNVDFYNEWFSLDLVT-DNKKVVGIVAMQMKTLTPFFFKTKAVVLATGG  196 (566)
T ss_pred             HHHHHHHhCCCEEEeCcEEEEEEE-ECCEEEEEEEEECCCCeEEEEEeCeEEECCCc
Confidence            344445567899999999999886 47888887653   33  25789999999993

>PF14721 AIF_C: Apoptosis-inducing factor, mitochondrion-associated, C-term; PDB: 3GD4_A 1GV4_A 3GD3_A 1M6I_A

Probab=96.55  E-value=0.012  Score=44.89  Aligned_cols=33  Identities=18%  Similarity=0.205  Sum_probs=21.0

Q ss_pred             HHHHHhccCCCCCccCCCCCCeEEEee-cccceEEecCC
Q 013952          324 AVKTIMATEGGKTVTGYDYLPYFYSRA-FDLSWQFYGDN  361 (433)
Q Consensus       324 aa~~i~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~g~~  361 (433)
                      |++||.+..     .+|..+|+||+.+ |++.+..+|..
T Consensus         1 AG~NM~ga~-----~py~hq~~fwSdlgp~vgyeAvG~~   34 (133)
T PF14721_consen    1 AGENMTGAN-----KPYWHQSMFWSDLGPDVGYEAVGIV   34 (133)
T ss_dssp             HHHHHTTT--------S-S--EEEEESSTTEEEEEEES-
T ss_pred             CCccccCCC-----CcccccchhHhhcCCCcCeEEeeec
Confidence            568888764     7899999999998 57888777754

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.55  E-value=0.035  Score=56.85  Aligned_cols=47  Identities=26%  Similarity=0.417  Sum_probs=37.1

Q ss_pred             HHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC---CCc--EEECCEEEEcccC
Q 013952          213 YYANKGIKIIKGTVAVGFTTNADGEVKEVKLK---DGR--TLEADIVVVGVGG  260 (433)
Q Consensus       213 ~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~---~g~--~i~~d~vi~a~G~  260 (433)
                      .+++.||++++++.+.++.. +++++.+|...   +|+  .+.++.||+|||-
T Consensus       179 ~~~~~gV~i~~~t~v~~Li~-d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG  230 (640)
T PRK07573        179 QIAAGTVKMYTRTEMLDLVV-VDGRARGIVARNLVTGEIERHTADAVVLATGG  230 (640)
T ss_pred             HHHhcCCEEEeceEEEEEEE-eCCEEEEEEEEECCCCcEEEEECCEEEECCCC
Confidence            45677899999999999876 46778777663   453  5899999999995

>TIGR00551 nadB L-aspartate oxidase

Probab=96.53  E-value=0.035  Score=55.10  Aligned_cols=56  Identities=29%  Similarity=0.335  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHh-cCcEEEcCCeEEEEEecCCCcEEEEEeCC-C--cEEECCEEEEcccCcc
Q 013952          206 IAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKLKD-G--RTLEADIVVVGVGGRP  262 (433)
Q Consensus       206 ~~~~l~~~l~~-~GV~v~~~~~v~~i~~~~~g~~~~v~~~~-g--~~i~~d~vi~a~G~~p  262 (433)
                      +.+.+.+.+++ .||++++++.+.++.. +++++..+...+ +  ..+.++.||+|+|...
T Consensus       130 l~~~L~~~~~~~~gi~i~~~~~v~~l~~-~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~  189 (488)
T TIGR00551       130 VITTLVKKALNHPNIRIIEGENALDLLI-ETGRVVGVWVWNRETVETCHADAVVLATGGAG  189 (488)
T ss_pred             HHHHHHHHHHhcCCcEEEECeEeeeeec-cCCEEEEEEEEECCcEEEEEcCEEEECCCccc
Confidence            34445555665 6899999999999976 356666665543 2  3689999999999644

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.42  E-value=0.05  Score=55.25  Aligned_cols=50  Identities=22%  Similarity=0.283  Sum_probs=37.0

Q ss_pred             HHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEECCEEEEcccC
Q 013952          211 EGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGG  260 (433)
Q Consensus       211 ~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~---~~g~--~i~~d~vi~a~G~  260 (433)
                      .+..++.||+++.++.+.++..+++|++.++..   .+|+  .+.++.||+|||-
T Consensus       150 ~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG  204 (588)
T PRK08958        150 YQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGG  204 (588)
T ss_pred             HHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCC
Confidence            333456788889998888887645678888765   3453  5789999999994

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.41  E-value=0.014  Score=57.40  Aligned_cols=34  Identities=29%  Similarity=0.408  Sum_probs=31.2

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      +.++++|||+|..|+.+|..|++.|++   |+++|+.
T Consensus         4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~---V~~~d~~   37 (450)
T PRK14106          4 KGKKVLVVGAGVSGLALAKFLKKLGAK---VILTDEK   37 (450)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCE---EEEEeCC
Confidence            457899999999999999999999987   9999887

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=96.38  E-value=0.0068  Score=41.95  Aligned_cols=32  Identities=19%  Similarity=0.221  Sum_probs=28.6

Q ss_pred             EECCCHHHHHHHHHHHhCCCeEEEEccCCccC
Q 013952          167 VVGGGYIGLELSAALKINNIDVSMVYPEPWCM  198 (433)
Q Consensus       167 ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~  198 (433)
                      |||+|.+|+-+|..|.+.|.+|+++++.+.+-
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~G   32 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLG   32 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcccC
Confidence            79999999999999999999999999987653

...

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.35  E-value=0.056  Score=54.82  Aligned_cols=53  Identities=23%  Similarity=0.314  Sum_probs=39.1

Q ss_pred             HHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEECCEEEEcccCc
Q 013952          208 AFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGGR  261 (433)
Q Consensus       208 ~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~---~~g~--~i~~d~vi~a~G~~  261 (433)
                      ..+.+.+++.||+++.++.+.++.. +++++.++..   .+++  .+.++.||+|+|-.
T Consensus       139 ~~L~~~~~~~gi~i~~~t~v~~L~~-~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~  196 (575)
T PRK05945        139 HELVNNLRRYGVTIYDEWYVMRLIL-EDNQAKGVVMYHIADGRLEVVRAKAVMFATGGY  196 (575)
T ss_pred             HHHHHHHhhCCCEEEeCcEEEEEEE-ECCEEEEEEEEEcCCCeEEEEECCEEEECCCCC
Confidence            3455556677999999999999875 4676666542   3553  58999999999954

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.35  E-value=0.018  Score=56.55  Aligned_cols=82  Identities=24%  Similarity=0.194  Sum_probs=58.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEE
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE  240 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~  240 (433)
                      ..++++|+|+|.+|+.+|..|.+.|.+|+++++...       ..+ +...+.+.+.|++++.+....+           
T Consensus         4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~-------~~~-~~~~~~l~~~~~~~~~~~~~~~-----------   64 (450)
T PRK14106          4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEE-------DQL-KEALEELGELGIELVLGEYPEE-----------   64 (450)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch-------HHH-HHHHHHHHhcCCEEEeCCcchh-----------
Confidence            468999999999999999999999999999976431       222 2223445677887665543210           


Q ss_pred             EEeCCCcEEECCEEEEcccCccChhhh
Q 013952          241 VKLKDGRTLEADIVVVGVGGRPLISLF  267 (433)
Q Consensus       241 v~~~~g~~i~~d~vi~a~G~~p~~~~~  267 (433)
                            ..-.+|.||.++|..|+.+.+
T Consensus        65 ------~~~~~d~vv~~~g~~~~~~~~   85 (450)
T PRK14106         65 ------FLEGVDLVVVSPGVPLDSPPV   85 (450)
T ss_pred             ------HhhcCCEEEECCCCCCCCHHH
Confidence                  012489999999988877755

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.32  E-value=0.072  Score=54.16  Aligned_cols=32  Identities=25%  Similarity=0.321  Sum_probs=28.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccC
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPE  194 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~  194 (433)
                      -.|+|||+|..|+-+|..+++.|.+|++++..
T Consensus        13 ~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~   44 (591)
T PRK07057         13 FDVVIVGAGGSGMRASLQLARAGLSVAVLSKV   44 (591)
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCcEEEEecc
Confidence            47999999999999999999999999998764

>PLN03000 amine oxidase

Probab=96.31  E-value=0.0049  Score=63.87  Aligned_cols=33  Identities=30%  Similarity=0.480  Sum_probs=31.2

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ..+|+|||||++|++||..|++.|++   |+|+|+.
T Consensus       184 ~~~VvIIGaG~aGL~aA~~L~~~G~~---V~VlE~~  216 (881)
T PLN03000        184 KSSVVIVGAGLSGLAAARQLMRFGFK---VTVLEGR  216 (881)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCc---EEEEEcc
Confidence            47999999999999999999999987   9999998

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.31  E-value=0.058  Score=54.38  Aligned_cols=53  Identities=21%  Similarity=0.388  Sum_probs=38.0

Q ss_pred             HHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEECCEEEEcccCc
Q 013952          209 FYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGGR  261 (433)
Q Consensus       209 ~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~---~~g~--~i~~d~vi~a~G~~  261 (433)
                      .+.+.+++.||++++++.+.++..++++++.++..   .+++  .+.++.||+|||-.
T Consensus       139 ~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~  196 (543)
T PRK06263        139 GLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGA  196 (543)
T ss_pred             HHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCC
Confidence            34445566789999999999987633444766543   4553  58899999999953

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.22  E-value=0.023  Score=56.00  Aligned_cols=136  Identities=18%  Similarity=0.163  Sum_probs=75.1

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhCCc
Q 013952            7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKGI   86 (433)
Q Consensus         7 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   86 (433)
                      +|+|||.|++|+++|+.|+++|++   |++.|+...+.                             .......+...|+
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~---V~~~D~~~~~~-----------------------------~~~~~~~l~~~gi   49 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWE---VVVSDRNDSPE-----------------------------LLERQQELEQEGI   49 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCE---EEEECCCCchh-----------------------------hHHHHHHHHHcCC
Confidence            589999999999999999999987   99998871110                             0111234566788


Q ss_pred             EEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEE
Q 013952           87 ELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAV  166 (433)
Q Consensus        87 ~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~  166 (433)
                      .+..+...   +.+.....     .-.+|.+|+++|..+..|..   ......++-.....+-.   .....  ..+.+.
T Consensus        50 ~~~~g~~~---~~~~~~~~-----~~~~d~vv~s~gi~~~~~~~---~~a~~~~i~v~~~~~~~---~~~~~--~~~~I~  113 (459)
T PRK02705         50 TVKLGKPL---ELESFQPW-----LDQPDLVVVSPGIPWDHPTL---VELRERGIEVIGEIELA---WRALK--HIPWVG  113 (459)
T ss_pred             EEEECCcc---chhhhhHH-----hhcCCEEEECCCCCCCCHHH---HHHHHcCCcEEEhHHHH---HHhhc--CCCEEE
Confidence            88765322   11110000     12478899988876544431   11111121122222211   11111  234666


Q ss_pred             EECCC---HHHHHHHHHHHhCCCeEEE
Q 013952          167 VVGGG---YIGLELSAALKINNIDVSM  190 (433)
Q Consensus       167 ViG~G---~~g~e~a~~l~~~g~~V~l  190 (433)
                      |-|+.   -+.-.++..|...|.+...
T Consensus       114 VTGT~GKTTTt~ml~~iL~~~g~~~~~  140 (459)
T PRK02705        114 ITGTNGKTTVTALLAHILQAAGLNAPA  140 (459)
T ss_pred             EeCCCchHHHHHHHHHHHHHcCCCeEE
Confidence            76652   3445566777777876554

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=96.22  E-value=0.016  Score=60.71  Aligned_cols=33  Identities=27%  Similarity=0.407  Sum_probs=30.1

Q ss_pred             cEEEECCCHHHHHHHHHHHhC--CCeEEEEccCCc
Q 013952          164 KAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPW  196 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~--g~~V~li~~~~~  196 (433)
                      +|+|||+|+.|+-+|..|++.  |.+|+++++.+.
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~   36 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP   36 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence            689999999999999999998  899999998754

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=96.18  E-value=0.077  Score=54.31  Aligned_cols=51  Identities=20%  Similarity=0.356  Sum_probs=36.8

Q ss_pred             HHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEECCEEEEcccC
Q 013952          210 YEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGG  260 (433)
Q Consensus       210 l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~---~~g~--~i~~d~vi~a~G~  260 (433)
                      +.+.+++.||+++.++.+.++..++++++.++..   .+|+  .+.++.||+|||-
T Consensus       193 L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG  248 (635)
T PLN00128        193 LYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGG  248 (635)
T ss_pred             HHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCC
Confidence            3334455688888888888876644677777765   2453  5789999999994

>TIGR01810 betA choline dehydrogenase

Probab=96.18  E-value=0.0042  Score=62.40  Aligned_cols=59  Identities=15%  Similarity=0.228  Sum_probs=42.9

Q ss_pred             HHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCC-c---EEECCEEEEcccCccChhhh
Q 013952          208 AFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG-R---TLEADIVVVGVGGRPLISLF  267 (433)
Q Consensus       208 ~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g-~---~i~~d~vi~a~G~~p~~~~~  267 (433)
                      ..+....++.+++++.++.|.+|.. +++++++|++.++ .   .+.++.||+|.|.--...++
T Consensus       198 ~~l~~a~~r~nl~i~~~~~V~rI~~-~~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LL  260 (532)
T TIGR01810       198 AYLHPAMKRPNLEVQTRAFVTKINF-EGNRATGVEFKKGGRKEHTEANKEVILSAGAINSPQLL  260 (532)
T ss_pred             HHhhhhccCCCeEEEeCCEEEEEEe-cCCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHH
Confidence            3444444577899999999999987 4677888877443 2   35899999999965444444

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=96.16  E-value=0.034  Score=51.97  Aligned_cols=33  Identities=39%  Similarity=0.616  Sum_probs=30.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEP  195 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~  195 (433)
                      .+|+|+|||..|+-.|..|.+.|.+|.+++...
T Consensus         3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e   35 (420)
T KOG2614|consen    3 PKVVIVGGGIVGLATALALHRKGIDVVVLESRE   35 (420)
T ss_pred             CcEEEECCcHHHHHHHHHHHHcCCeEEEEeecc
Confidence            589999999999999999999999999988653

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=96.14  E-value=0.054  Score=51.25  Aligned_cols=84  Identities=21%  Similarity=0.261  Sum_probs=62.8

Q ss_pred             HHHHHHHHHhCCCeEEEEccCCccCCCC-CCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCC-cEEEC
Q 013952          174 GLELSAALKINNIDVSMVYPEPWCMPRL-FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG-RTLEA  251 (433)
Q Consensus       174 g~e~a~~l~~~g~~V~li~~~~~~~~~~-~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g-~~i~~  251 (433)
                      .-++..++.+.|.... .+...++.|.. -..++.+.+.+.+++.||+++++++|++|+.  ++  ..+.+.++ ..+.|
T Consensus        56 ~~d~~~fF~~~Gi~~~-~e~~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i~~--~~--~~v~~~~~~~~~~a  130 (376)
T TIGR03862        56 AVALQDWARGLGIETF-VGSSGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGWQG--GT--LRFETPDGQSTIEA  130 (376)
T ss_pred             HHHHHHHHHHCCCceE-ECCCCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEeC--Cc--EEEEECCCceEEec
Confidence            3467788888887533 44556666632 3568899999999999999999999999932  33  45666443 46999


Q ss_pred             CEEEEcccCcc
Q 013952          252 DIVVVGVGGRP  262 (433)
Q Consensus       252 d~vi~a~G~~p  262 (433)
                      |.||+|+|..+
T Consensus       131 ~~vIlAtGG~s  141 (376)
T TIGR03862       131 DAVVLALGGAS  141 (376)
T ss_pred             CEEEEcCCCcc
Confidence            99999999654

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>PLN02785 Protein HOTHEAD

Probab=96.13  E-value=0.0062  Score=61.46  Aligned_cols=36  Identities=17%  Similarity=0.577  Sum_probs=31.1

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPY   44 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~   44 (433)
                      .||+||||||.||..+|.+|.+ +.+   |+|||+...++
T Consensus        55 ~yD~IIVG~G~aG~~lA~~Ls~-~~~---VLllE~G~~~~   90 (587)
T PLN02785         55 AYDYIVVGGGTAGCPLAATLSQ-NFS---VLLLERGGVPF   90 (587)
T ss_pred             cCCEEEECcCHHHHHHHHHHhc-CCc---EEEEecCCCCC
Confidence            5999999999999999999999 455   99999993333

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.12  E-value=0.085  Score=54.03  Aligned_cols=32  Identities=25%  Similarity=0.377  Sum_probs=28.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccC
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPE  194 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~  194 (433)
                      -.|+|||+|..|+-+|..+++.|.+|.+++..
T Consensus         9 ~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~   40 (626)
T PRK07803          9 YDVVVIGAGGAGLRAAIEARERGLRVAVVCKS   40 (626)
T ss_pred             ecEEEECcCHHHHHHHHHHHHCCCCEEEEecc
Confidence            36999999999999999999999999998764

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=96.11  E-value=0.0057  Score=55.28  Aligned_cols=36  Identities=19%  Similarity=0.324  Sum_probs=29.8

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCC-CcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKP-GELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~-~~V~lie~~   40 (433)
                      +.||+|||||..|.+.|.+|+++-.+. .+|+|+|++
T Consensus        86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErd  122 (509)
T KOG2853|consen   86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERD  122 (509)
T ss_pred             ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEecc
Confidence            579999999999999999998762211 349999999

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=96.11  E-value=0.021  Score=54.06  Aligned_cols=33  Identities=27%  Similarity=0.304  Sum_probs=29.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccC
Q 013952          162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPE  194 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~  194 (433)
                      .-.|+|||+|..|+|.|.+.++.|.+.++++..
T Consensus        28 ~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~   60 (679)
T KOG2311|consen   28 TYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN   60 (679)
T ss_pred             cccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence            348999999999999999999999998887654

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.08  E-value=0.089  Score=53.44  Aligned_cols=50  Identities=18%  Similarity=0.291  Sum_probs=35.3

Q ss_pred             HHHHHh-cCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEECCEEEEcccCc
Q 013952          211 EGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGGR  261 (433)
Q Consensus       211 ~~~l~~-~GV~v~~~~~v~~i~~~~~g~~~~v~~---~~g~--~i~~d~vi~a~G~~  261 (433)
                      .+.+++ .||+++.++.+.++.. +++++.++..   .+++  .+.++.||+|+|-.
T Consensus       144 ~~~~~~~~gv~i~~~~~v~~Li~-~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~  199 (577)
T PRK06069        144 YSRALRFDNIHFYDEHFVTSLIV-ENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGA  199 (577)
T ss_pred             HHHHHhcCCCEEEECCEEEEEEE-ECCEEEEEEEEEcCCCeEEEEECCcEEEcCchh
Confidence            333433 5889999988888875 3666666543   3554  58999999999953

>PLN02976 amine oxidase

Probab=96.04  E-value=0.0072  Score=65.34  Aligned_cols=33  Identities=24%  Similarity=0.472  Sum_probs=31.0

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      .++|+|||||++|+++|+.|.+.|++   |+|+|+.
T Consensus       693 ~~dV~IIGAG~AGLaAA~~L~~~G~~---V~VlEa~  725 (1713)
T PLN02976        693 RKKIIVVGAGPAGLTAARHLQRQGFS---VTVLEAR  725 (1713)
T ss_pred             CCcEEEECchHHHHHHHHHHHHCCCc---EEEEeec
Confidence            47999999999999999999999987   9999987

>PTZ00367 squalene epoxidase; Provisional

Probab=95.98  E-value=0.078  Score=53.36  Aligned_cols=33  Identities=27%  Similarity=0.337  Sum_probs=30.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEP  195 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~  195 (433)
                      ..|+|||+|+.|+-+|..|++.|.+|+++++.+
T Consensus        34 ~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~   66 (567)
T PTZ00367         34 YDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL   66 (567)
T ss_pred             ccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence            479999999999999999999999999999764

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.93  E-value=0.084  Score=50.56  Aligned_cols=101  Identities=22%  Similarity=0.302  Sum_probs=62.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCC---CeEEEEccCCccCCC---------------------C---CCHHHHHHHH----
Q 013952          163 GKAVVVGGGYIGLELSAALKINN---IDVSMVYPEPWCMPR---------------------L---FTADIAAFYE----  211 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g---~~V~li~~~~~~~~~---------------------~---~~~~~~~~l~----  211 (433)
                      .+|+|||+|.+|+.+|..|.+.-   ..|+++++.+.+...                     .   .+.++.+++.    
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~   81 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ   81 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence            47999999999999999998762   237887766432110                     0   1122333322    


Q ss_pred             ------------------------------HHHHhcC---cEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcc
Q 013952          212 ------------------------------GYYANKG---IKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGV  258 (433)
Q Consensus       212 ------------------------------~~l~~~G---V~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~  258 (433)
                                                    .++++.-   |.++ ..+...+....++....+...+|....||.+|+||
T Consensus        82 ~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~-~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlat  160 (474)
T COG4529          82 RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTI-REEATSVRQDTNAGGYLVTTADGPSEIADIIVLAT  160 (474)
T ss_pred             ccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEE-eeeeecceeccCCceEEEecCCCCeeeeeEEEEec
Confidence                                          2233222   3333 33444444433466677888899999999999999


Q ss_pred             cCccCh
Q 013952          259 GGRPLI  264 (433)
Q Consensus       259 G~~p~~  264 (433)
                      |..+..
T Consensus       161 gh~~~~  166 (474)
T COG4529         161 GHSAPP  166 (474)
T ss_pred             cCCCCC
Confidence            965443

>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]

Probab=95.90  E-value=0.014  Score=51.90  Aligned_cols=53  Identities=13%  Similarity=0.205  Sum_probs=38.4

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHc----CCCCCcEEEEcCCCCCCCCCCccccccCCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQ----GVKPGELAIISKEVAPYERPALSKAYLFPE   57 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~----g~~~~~V~lie~~~~~~~~~~~~~~~~~~~   57 (433)
                      +.+|+|||+|..|++.|..+.+.    ..+..+|++++....+..-+...-+++.+.
T Consensus         3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e~T~s~~~AGl~~p~   59 (342)
T KOG3923|consen    3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTEDTTSDVAAGLFRPD   59 (342)
T ss_pred             CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCccccccccccceeecc
Confidence            57999999999999999888874    345578999998854544444444555443

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=95.87  E-value=0.015  Score=55.91  Aligned_cols=57  Identities=21%  Similarity=0.208  Sum_probs=46.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccC-CccCCCCCCHHHHHHHHHHHHhcCc
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPE-PWCMPRLFTADIAAFYEGYYANKGI  219 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~-~~~~~~~~~~~~~~~l~~~l~~~GV  219 (433)
                      ..|+|||+|+.|+-+|..|++.|.+|+++++. ..+.+......+...-.+.|++.|+
T Consensus         3 ~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~   60 (387)
T COG0654           3 LDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGL   60 (387)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCC
Confidence            57999999999999999999999999999997 3444432334556667778888888

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.85  E-value=0.13  Score=52.26  Aligned_cols=32  Identities=31%  Similarity=0.513  Sum_probs=28.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEcc
Q 013952          162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYP  193 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~  193 (433)
                      +..|+|||+|..|+-+|..+++.|.+|.+++.
T Consensus         3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK   34 (589)
T PRK08641          3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSL   34 (589)
T ss_pred             CccEEEECchHHHHHHHHHHHHcCCcEEEEEc
Confidence            44799999999999999999999999999874

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=95.81  E-value=0.14  Score=52.71  Aligned_cols=47  Identities=11%  Similarity=0.160  Sum_probs=36.1

Q ss_pred             HHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEECCEEEEccc
Q 013952          212 GYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVG  259 (433)
Q Consensus       212 ~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~---~~g~--~i~~d~vi~a~G  259 (433)
                      +.+++.||+++.++.+.++.. +++++.++..   .+|+  .+.|+.||+|||
T Consensus       166 ~~~~~~gv~i~~~~~~~~Li~-~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATG  217 (657)
T PRK08626        166 NEAIKLGVPVHDRKEAIALIH-DGKRCYGAVVRCLITGELRAYVAKATLIATG  217 (657)
T ss_pred             HHHHhCCCEEEeeEEEEEEEE-ECCEEEEEEEEEcCCCcEEEEEcCeEEECCC
Confidence            445667999999999999986 4677766654   3554  468999999999

>PRK08071 L-aspartate oxidase; Provisional

Probab=95.80  E-value=0.077  Score=52.96  Aligned_cols=45  Identities=24%  Similarity=0.429  Sum_probs=32.5

Q ss_pred             cCcEEEcCCeEEEEEecCCCcEEEEEeCC--Cc--EEECCEEEEcccCcc
Q 013952          217 KGIKIIKGTVAVGFTTNADGEVKEVKLKD--GR--TLEADIVVVGVGGRP  262 (433)
Q Consensus       217 ~GV~v~~~~~v~~i~~~~~g~~~~v~~~~--g~--~i~~d~vi~a~G~~p  262 (433)
                      .||++++++.+.++.. +++++..+...+  ++  .+.++.||+|+|-..
T Consensus       142 ~gV~i~~~~~v~~Li~-~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~  190 (510)
T PRK08071        142 PHVTVVEQEMVIDLII-ENGRCIGVLTKDSEGKLKRYYADYVVLASGGCG  190 (510)
T ss_pred             cCCEEEECeEhhheee-cCCEEEEEEEEECCCcEEEEEcCeEEEecCCCc
Confidence            4788888888888765 466666666533  32  688999999999644

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=95.76  E-value=0.052  Score=50.95  Aligned_cols=59  Identities=20%  Similarity=0.245  Sum_probs=50.0

Q ss_pred             CCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013952          202 FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP  262 (433)
Q Consensus       202 ~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p  262 (433)
                      .+..+...+.+.+++.|++++.+++|.++.. .++.+..|.+.+| .+.||.||+|+|...
T Consensus       135 ~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~-~~~~~~~v~~~~g-~~~a~~vV~a~G~~~  193 (337)
T TIGR02352       135 DPRALLKALEKALEKLGVEIIEHTEVQHIEI-RGEKVTAIVTPSG-DVQADQVVLAAGAWA  193 (337)
T ss_pred             ChHHHHHHHHHHHHHcCCEEEccceEEEEEe-eCCEEEEEEcCCC-EEECCEEEEcCChhh
Confidence            3678899999999999999999999999987 4555667887777 799999999999543

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=95.72  E-value=0.03  Score=52.57  Aligned_cols=102  Identities=22%  Similarity=0.360  Sum_probs=61.2

Q ss_pred             cEEEECCCHHHHHHHHHHHhCC-CeEEEEccCCcc--CCCCC------------------C-------------------
Q 013952          164 KAVVVGGGYIGLELSAALKINN-IDVSMVYPEPWC--MPRLF------------------T-------------------  203 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g-~~V~li~~~~~~--~~~~~------------------~-------------------  203 (433)
                      .++.||.|+..+-+|..|.+.+ .++.++++.+.+  .+.++                  +                   
T Consensus         4 D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl~~   83 (341)
T PF13434_consen    4 DLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRLYE   83 (341)
T ss_dssp             SEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-HHH
T ss_pred             eEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCChhh
Confidence            5789999999999999998876 778888865432  11000                  0                   


Q ss_pred             -----------HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCC--cEEEEEeC----CCcEEECCEEEEcccCccChh
Q 013952          204 -----------ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG--EVKEVKLK----DGRTLEADIVVVGVGGRPLIS  265 (433)
Q Consensus       204 -----------~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g--~~~~v~~~----~g~~i~~d~vi~a~G~~p~~~  265 (433)
                                 .+..+.++-..++..-.+.++++|++|....++  ....|.+.    +++.+.|+.||+++|..|...
T Consensus        84 f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P~iP  162 (341)
T PF13434_consen   84 FYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQPRIP  162 (341)
T ss_dssp             HHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE---
T ss_pred             hhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCCCCC
Confidence                       133445555555566558889999999874433  35677773    346899999999999888764

>PRK07395 L-aspartate oxidase; Provisional

Probab=95.67  E-value=0.084  Score=53.15  Aligned_cols=51  Identities=24%  Similarity=0.391  Sum_probs=34.8

Q ss_pred             HHHHHHh-cCcEEEcCCeEEEEEecC-CCcEEEEEeC-CCc--EEECCEEEEcccC
Q 013952          210 YEGYYAN-KGIKIIKGTVAVGFTTNA-DGEVKEVKLK-DGR--TLEADIVVVGVGG  260 (433)
Q Consensus       210 l~~~l~~-~GV~v~~~~~v~~i~~~~-~g~~~~v~~~-~g~--~i~~d~vi~a~G~  260 (433)
                      +.+.+++ .||++++++.+.++..++ ++++.++... +|.  .+.++.||+|||-
T Consensus       140 L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG  195 (553)
T PRK07395        140 LTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGG  195 (553)
T ss_pred             HHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCC
Confidence            3334443 478888888888886532 3677776543 443  3789999999995

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=95.51  E-value=0.3  Score=49.33  Aligned_cols=33  Identities=30%  Similarity=0.385  Sum_probs=28.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEP  195 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~  195 (433)
                      -.|+|||+|..|+-+|..+++.|.+|.+++..+
T Consensus         5 ~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~   37 (549)
T PRK12834          5 ADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN   37 (549)
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            368999999999999999999999998887654

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=95.50  E-value=0.027  Score=52.40  Aligned_cols=101  Identities=15%  Similarity=0.232  Sum_probs=66.5

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCC-CCCcEE-EEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHH
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGV-KPGELA-IISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK   82 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~-~~~~V~-lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (433)
                      ...|-|||+|+-|--.|..|.+.-. ...+|. |++...   .   ..         .-+|.+.       .....+.++
T Consensus       347 k~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~---n---m~---------kiLPeyl-------s~wt~ekir  404 (659)
T KOG1346|consen  347 KQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKY---N---ME---------KILPEYL-------SQWTIEKIR  404 (659)
T ss_pred             cceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccC---C---hh---------hhhHHHH-------HHHHHHHHH
Confidence            4579999999999999999887521 122232 333220   0   00         0111110       123345567


Q ss_pred             hCCcEEEeCceEEEEECCCC--EEEeCCCcEEecceEEEccCCCccc
Q 013952           83 EKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLR  127 (433)
Q Consensus        83 ~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~~  127 (433)
                      +.||.++.+..|.++....+  .+.+.||.++..|.+|+|+|..|+.
T Consensus       405 ~~GV~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~  451 (659)
T KOG1346|consen  405 KGGVDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNS  451 (659)
T ss_pred             hcCceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecCCCch
Confidence            78999999988877655444  4678899999999999999998864

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=95.48  E-value=0.014  Score=50.94  Aligned_cols=91  Identities=15%  Similarity=0.250  Sum_probs=56.8

Q ss_pred             EEEECCCHHHHHHHHHHHhC--CCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcE----------EE--cCCeEEEE
Q 013952          165 AVVVGGGYIGLELSAALKIN--NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIK----------II--KGTVAVGF  230 (433)
Q Consensus       165 v~ViG~G~~g~e~a~~l~~~--g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~----------v~--~~~~v~~i  230 (433)
                      .+|||||..|+.+|..|+.+  ..+|.+++.++-...-    .--+.+-+.+++..|+          +.  .+. |..+
T Consensus         2 fivvgggiagvscaeqla~~~psa~illitass~vksv----tn~~~i~~ylekfdv~eq~~~elg~~f~~~~~~-v~~~   76 (334)
T KOG2755|consen    2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSV----TNYQKIGQYLEKFDVKEQNCHELGPDFRRFLND-VVTW   76 (334)
T ss_pred             eEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHH----hhHHHHHHHHHhcCccccchhhhcccHHHHHHh-hhhh
Confidence            58999999999999999876  4577777765433221    1112223333333332          11  011 2233


Q ss_pred             EecCCCcEEEEEeCCCcEEECCEEEEcccCccCh
Q 013952          231 TTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI  264 (433)
Q Consensus       231 ~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~  264 (433)
                      ..    .-..+++.+|.++.++.+++++|.+|-.
T Consensus        77 ~s----~ehci~t~~g~~~ky~kKOG~tg~kPkl  106 (334)
T KOG2755|consen   77 DS----SEHCIHTQNGEKLKYFKLCLCTGYKPKL  106 (334)
T ss_pred             cc----ccceEEecCCceeeEEEEEEecCCCcce
Confidence            22    1146888999999999999999999954

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=95.40  E-value=0.25  Score=50.12  Aligned_cols=43  Identities=28%  Similarity=0.336  Sum_probs=32.4

Q ss_pred             cCcEEEcCCeEEEEEecCCCcEEEEEe---CCC--cEEECCEEEEcccC
Q 013952          217 KGIKIIKGTVAVGFTTNADGEVKEVKL---KDG--RTLEADIVVVGVGG  260 (433)
Q Consensus       217 ~GV~v~~~~~v~~i~~~~~g~~~~v~~---~~g--~~i~~d~vi~a~G~  260 (433)
                      .+|+++.++.+.++.. +++++.++..   .+|  ..+.++.||+|+|-
T Consensus       146 ~~i~i~~~~~v~~Li~-~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG  193 (580)
T TIGR01176       146 PQIMRYDEWFVTDLLV-DDGRVCGLVAIEMAEGRLVTILADAVVLATGG  193 (580)
T ss_pred             CCCEEEeCeEEEEEEe-eCCEEEEEEEEEcCCCcEEEEecCEEEEcCCC
Confidence            4788888888888876 4677766543   355  36889999999994

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=95.38  E-value=0.025  Score=54.06  Aligned_cols=35  Identities=23%  Similarity=0.261  Sum_probs=31.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC  197 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~  197 (433)
                      ++|+|||+|+.|+++|..|++.|.+|++++..+..
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~   37 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK   37 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence            57999999999999999999999999999975544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	433
3lxd_A	415	Crystal Structure Of Ferredoxin Reductase Arr From		4e-33
3fg2_P	404	Crystal Structure Of Ferredoxin Reductase For The C		3e-32
1q1r_A	431	Crystal Structure Of Putidaredoxin Reductase From P		3e-24
3lb8_A	436	Crystal Structure Of The Covalent Putidaredoxin Red		3e-24
2gr3_A	408	Crystal Structure Of Ferredoxin Reductase, Bpha4 (O		2e-20
1d7y_A	408	Crystal Structure Of Nadh-Dependent Ferredoxin Redu		2e-20
3ef6_A	410	Crystal Structure Of Toluene 2,3-Dioxygenase Reduct		1e-18
1gv4_A	528	Murine Apoptosis-Inducing Factor (Aif) Length = 528		8e-16
3gd3_A	535	Crystal Structure Of A Naturally Folded Murine Apop		9e-16
3gd4_A	511	Crystal Structure Of The Reduced, Nad-Bound Form Of		9e-16
4fdc_B	514	Crystal Structure Of The E493v Mutant Of Human Apop		4e-15
1m6i_A	493	Crystal Structure Of Apoptosis Inducing Factor (Aif		5e-15
2cdu_A	452	The Crystal Structure Of Water-Forming Nad(P)h Oxid		2e-12
1nhr_A	447	An L40c Mutation Converts The Cysteine-Sulfenic Aci		1e-10
1nhs_A	447	An L40c Mutation Converts The Cysteine-Sulfenic Aci		1e-10
1joa_A	447	Nadh Peroxidase With Cysteine-Sulfenic Acid Length		1e-10
1nhq_A	447	Crystallographic Analyses Of Nadh Peroxidase Cys42a		1e-10
1nhp_A	447	Crystallographic Analyses Of Nadh Peroxidase Cys42a		1e-10
1f8w_A	447	Crystal Structure Of Nadh Peroxidase Mutant: R303m		2e-10
1xhc_A	367	Nadh Oxidase /nitrite Reductase From Pyrococcus Fur		2e-10
2qae_A	468	Crystal Structure Analysis Of Trypanosoma Cruzi Lip		4e-10
3cgc_A	480	Pyridine Nucleotide Complexes With Bacillus Anthrac		2e-09
3iwa_A	472	Crystal Structure Of A Fad-Dependent Pyridine Nucle		6e-09
3klj_A	385	Crystal Structure Of Nadh:rubredoxin Oxidoreductase		2e-08
1mo9_A	523	Nadph Dependent 2-Ketopropyl Coenzyme M Oxidoreduct		1e-07
2v3a_A	384	Crystal Structure Of Rubredoxin Reductase From Pseu		1e-07
3icr_A	588	Crystal Structure Of Oxidized Bacillus Anthracis Co		2e-07
3ntd_A	565	Structure Of The Shewanella Loihica Pv-4 Nadh-Depen		3e-07
1lvl_A	458	The Refined Structure Of Pseudomonas Putida Lipoami		5e-07
3cgb_A	480	Pyridine Nucleotide Complexes With Bacillus Anthrac		8e-07
2eq7_A	455	Crystal Structure Of Lipoamide Dehydrogenase From T		3e-06
2woi_A	495	Trypanothione Reductase From Trypanosoma Brucei Len		5e-06
2wba_A	492	Properties Of Trypanothione Reductase From T. Bruce		5e-06
1nda_A	491	The Structure Of Trypanosoma Cruzi Trypanothione Re		2e-05
1gxf_A	492	Crystal Structure Of Trypanosoma Cruzi Trypanothion		2e-05
1aog_A	485	Trypanosoma Cruzi Trypanothione Reductase (Oxidized		2e-05
1bzl_A	486	Crystal Structure Of Trypanosoma Cruzi Trypanothion		2e-05
3nta_A	574	Structure Of The Shewanella Loihica Pv-4 Nadh-Depen		3e-05
3nt6_A	574	Structure Of The Shewanella Loihica Pv-4 Nadh-Depen		3e-05
1dxl_A	470	Dihydrolipoamide Dehydrogenase Of Glycine Decarboxy		5e-05
1lpf_A	477	Three-Dimensional Structure Of Lipoamide Dehydrogen		1e-04
1ebd_A	455	Dihydrolipoamide Dehydrogenase Complexed With The B		2e-04
1jeh_A	478	Crystal Structure Of Yeast E3, Lipoamide Dehydrogen		4e-04
2bc1_A	490	Structural Analysis Of Streptococcus Pyogenes Nadh		4e-04
2bc0_A	490	Structural Analysis Of Streptococcus Pyogenes Nadh		4e-04
3urh_A	491	Crystal Structure Of A Dihydrolipoamide Dehydrogena		4e-04
3lad_A	476	Refined Crystal Structure Of Lipoamide Dehydrogenas		4e-04
3kd9_A	449	Crystal Structure Of Pyridine Nucleotide Disulfide		5e-04

>pdb|3LXD|A Chain A, Crystal Structure Of Ferredoxin Reductase Arr From Novosphingobium Aromaticivorans Length = 415

Iteration: 1
 Score =  139 bits (349), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 111/367 (30%), Positives = 172/367 (46%), Gaps = 30/367 (8%)
Query: 32  GELAIISKEVA-PYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKGIELIL 90
           G + +I +E   PYERP LSK YL  E T       +C+         +++++K +E+ L
Sbjct: 35  GRVLVIGREPEIPYERPPLSKEYLAREKTFE----RICIRPA------QFWEDKAVEMKL 84
Query: 91  STEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDA 150
             E+V  D A+ T+    G   +Y  L+ ATG    RL+     GAD   +  +R  +DA
Sbjct: 85  GAEVVSLDPAAHTVKLGDGSAIEYGKLIWATGGDPRRLS---CVGADLAGVHAVRTKEDA 141
Query: 151 DKLVEXXXXXXXXXXXXXXXXYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFY 210
           D+L+                 YIGLE +A L    ++V+++   P  + R+    ++ FY
Sbjct: 142 DRLM-AELDAGAKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLARVAGEALSEFY 200
Query: 211 EGYYANKGIKIIKGTVAVGFTTNADG-EVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG 269
           +  +   G+ +  G  A       DG +V  V+++DG  + ADIV+VG+G  P +     
Sbjct: 201 QAEHRAHGVDLRTG--AAMDCIEGDGTKVTGVRMQDGSVIPADIVIVGIGIVPCVGALIS 258
Query: 270 QVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYR-EMRRVEHVDHARKSAEQAVKTI 328
             A    G++ D+F +TS  DVYA+GD A          + R+E V +A   A  A K I
Sbjct: 259 AGASGGNGVDVDEFCRTSLTDVYAIGDCAAHANDFADGAVIRLESVQNANDMATAAAKDI 318
Query: 329 MATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG--DTVLFGDNDLASATHKFGTYWIK 386
                      Y   P+F+S  +DL  Q  G + G  + VL GD     AT  F   ++K
Sbjct: 319 CGAP-----VPYKATPWFWSNQYDLKLQTVGLSTGHDNAVLRGD----PATRSFSVVYLK 369
Query: 387 DGKVVGV 393
            GKVV +
Sbjct: 370 GGKVVAL 376

>pdb|3FG2|P Chain P, Crystal Structure Of Ferredoxin Reductase For The Cyp199a2 System From Rhodopseudomonas Palustris Length = 404

Iteration: 1
 Score =  135 bits (341), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 118/389 (30%), Positives = 178/389 (45%), Gaps = 31/389 (7%)
Query: 9   VILGGGVSAGYAAREFAKQGVKPGELAIISKEVA-PYERPALSKAYLFPEGTARLPGFHV 67
           V++ G   AG+      +Q   PG +A+I+ E   PY+RP LSKAYL   G      F  
Sbjct: 4   VLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLSKAYLKSGGDPNSLMFR- 62
Query: 68  CVGSGGERLLPE-WYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVL 126
                     PE +++++ IELI S  +V  D   + LL A+G   +Y  LV+ATG+   
Sbjct: 63  ----------PEKFFQDQAIELI-SDRMVSIDREGRKLLLASGTAIEYGHLVLATGARN- 110
Query: 127 RLTDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKINNI 186
           R+ D  V  A   ++ YLR +D+++ L +                +IGLE +A  +   +
Sbjct: 111 RMLD--VPNASLPDVLYLRTLDESEVLRQRMPDKKHVVVIGAG--FIGLEFAATARAKGL 166
Query: 187 DVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG 246
           +V +V   P  M R+ T +I++++   ++  GI++  G  A       D  V  V L DG
Sbjct: 167 EVDVVELAPRVMARVVTPEISSYFHDRHSGAGIRMHYGVRATEIAAEGD-RVTGVVLSDG 225
Query: 247 RTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYR 306
            TL  D+VVVGVG  P + +          GI  D    TS   + A+GD A F    + 
Sbjct: 226 NTLPCDLVVVGVGVIPNVEIAAAAGLPTAAGIIVDQQLLTSDPHISAIGDCALFESVRFG 285
Query: 307 EMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG--D 364
           E  RVE V +A   A    + + A   G     YD  P+F+S   D   Q  G   G   
Sbjct: 286 ETMRVESVQNATDQA----RCVAARLTGDA-KPYDGYPWFWSDQGDDKLQIVGLTAGFDQ 340
Query: 365 TVLFGDNDLASATHKFGTYWIKDGKVVGV 393
            V+ G    + A   F  +  K GK++G+
Sbjct: 341 VVIRG----SVAERSFSAFCYKAGKLIGI 365

>pdb|1Q1R|A Chain A, Crystal Structure Of Putidaredoxin Reductase From Pseudomonas Putida Length = 431

Iteration: 1
 Score =  109 bits (273), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 98/354 (27%), Positives = 157/354 (44%), Gaps = 20/354 (5%)
Query: 41  VAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIA 100
           V P+  P LSKAYL  + TA                 P+ Y  + I+L+  T++   +  
Sbjct: 40  VIPHHLPPLSKAYLAGKATAESLYLRT----------PDAYAAQNIQLLGGTQVTAINRD 89
Query: 101 SKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEXXXXX 160
            + ++ + G    Y  LV+ATG     L         A N  YLR ++DA+ +       
Sbjct: 90  RQQVILSDGRALDYDRLVLATGGRPRPLPVASGAVGKANNFRYLRTLEDAECI--RRQLI 147
Query: 161 XXXXXXXXXXXYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIK 220
                      YIGLE++A     N+ V+++      + R+    ++AFYE  +   G+ 
Sbjct: 148 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVD 207
Query: 221 IIKGTVAVGFTTNADGE-VKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIE 279
           I  GT   GF  + D + V  V  +DG  L AD+V+ G+G  P   L      +   GI 
Sbjct: 208 IRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGLIPNCELASAAGLQVDNGIV 267
Query: 280 TDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTG 339
            ++  +TS   + AVGD A F  +LY    R+E V +A    EQA K I A   GK V  
Sbjct: 268 INEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNA---LEQARK-IAAILCGK-VPR 322
Query: 340 YDYLPYFYSRAFDLSWQFYGDNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGV 393
            +  P+F+S  +++  +  G + G   +     LA     F  ++++  +V+ V
Sbjct: 323 DEAAPWFWSDQYEIGLKMVGLSEGYDRIIVRGSLAQP--DFSVFYLQGDRVLAV 374

>pdb|3LB8|A Chain A, Crystal Structure Of The Covalent Putidaredoxin Reductase- Putidaredoxin Complex Length = 436

Iteration: 1
 Score =  109 bits (273), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 98/354 (27%), Positives = 157/354 (44%), Gaps = 20/354 (5%)
Query: 41  VAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIA 100
           V P+  P LSKAYL  + TA                 P+ Y  + I+L+  T++   +  
Sbjct: 39  VIPHHLPPLSKAYLAGKATAESLYLRT----------PDAYAAQNIQLLGGTQVTAINRD 88
Query: 101 SKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEXXXXX 160
            + ++ + G    Y  LV+ATG     L         A N  YLR ++DA+ +       
Sbjct: 89  RQQVILSDGRALDYDRLVLATGGRPRPLPVASGAVGKANNFRYLRTLEDAECI--RRQLI 146
Query: 161 XXXXXXXXXXXYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIK 220
                      YIGLE++A     N+ V+++      + R+    ++AFYE  +   G+ 
Sbjct: 147 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVD 206
Query: 221 IIKGTVAVGFTTNADGE-VKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIE 279
           I  GT   GF  + D + V  V  +DG  L AD+V+ G+G  P   L      +   GI 
Sbjct: 207 IRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGLIPNCELASAAGLQVDNGIV 266
Query: 280 TDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTG 339
            ++  +TS   + AVGD A F  +LY    R+E V +A    EQA K I A   GK V  
Sbjct: 267 INEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNA---LEQARK-IAAILCGK-VPR 321
Query: 340 YDYLPYFYSRAFDLSWQFYGDNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGV 393
            +  P+F+S  +++  +  G + G   +     LA     F  ++++  +V+ V
Sbjct: 322 DEAAPWFWSDQYEIGLKMVGLSEGYDRIIVRGSLAQP--DFSVFYLQGDRVLAV 373

>pdb|2GR3|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized Form) Length = 408

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 104/397 (26%), Positives = 174/397 (43%), Gaps = 38/397 (9%)
Query: 1   MAEKSFK--YVILGGGVSAGYAAREFAKQGVKPGELAIISKEVA-PYERPALSKAYLFPE 57
           M++++ K   V+LG G+++     E  + G + G + ++  E   PY+RP LSK ++   
Sbjct: 1   MSQEALKAPVVVLGAGLASVSFVAELRQAGYQ-GLITVVGDEAERPYDRPPLSKDFMA-H 58
Query: 58  GTARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQIL 117
           G A             E++  +  +   +E +L       D  + T+  + G    Y  L
Sbjct: 59  GDA-------------EKIRLDCKRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTL 105
Query: 118 VIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLEL 177
           V+ATG+    L     +GA    +  LR ++DA ++                   IGLEL
Sbjct: 106 VLATGAAPRALPTL--QGA-TMPVHTLRTLEDARRI--QAGLRPQSRLLIVGGGVIGLEL 160
Query: 178 SAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGE 237
           +A  +   + VS+V  +P  M R   A +A F   Y+A +G+ +        F  +  G 
Sbjct: 161 AATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDL-------RFERSVTGS 213
Query: 238 VKEV-KLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGD 296
           V  V  L DG  + AD+VVVG+G     +L +        GI  D + +T+  DVYA+GD
Sbjct: 214 VDGVVLLDDGTRIAADMVVVGIGVLANDALARAAGLACDDGIFVDAYGRTTCPDVYALGD 273
Query: 297 VATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQ 356
           V      L     R+E   +A+       + ++      T  GY  LP+++S    L  Q
Sbjct: 274 VTRQRNPLSGRFERIETWSNAQNQGIAVARHLV----DPTAPGYAELPWYFSDQGALRIQ 329
Query: 357 FYGDNVGD-TVLFGDNDLASATHKFGTYWIKDGKVVG 392
             G   GD  ++ G+  L +   KF    ++ G++VG
Sbjct: 330 VAGLASGDEEIVRGEVSLDAP--KFTLIELQKGRIVG 364

>pdb|1D7Y|A Chain A, Crystal Structure Of Nadh-Dependent Ferredoxin Reductase, Bpha4 Length = 408

Iteration: 1
 Score = 96.7 bits (239), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 104/397 (26%), Positives = 174/397 (43%), Gaps = 38/397 (9%)
Query: 1   MAEKSFK--YVILGGGVSAGYAAREFAKQGVKPGELAIISKEVA-PYERPALSKAYLFPE 57
           M++++ K   V+LG G+++     E  + G + G + ++  E   PY+RP LSK ++   
Sbjct: 1   MSQEALKAPVVVLGAGLASVSFVAELRQAGYQ-GLITVVGDEAERPYDRPPLSKDFMA-H 58
Query: 58  GTARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQIL 117
           G A             E++  +  +   +E +L       D  + T+  + G    Y  L
Sbjct: 59  GDA-------------EKIRLDCKRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTL 105
Query: 118 VIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLEL 177
           V+ATG+    L     +GA    +  LR ++DA ++                   IGLEL
Sbjct: 106 VLATGAAPRALPTL--QGA-TMPVHTLRTLEDARRI--QAGLRPQSRLLIVGGGVIGLEL 160
Query: 178 SAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGE 237
           +A  +   + VS+V  +P  M R   A +A F   Y+A +G+ +        F  +  G 
Sbjct: 161 AATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDL-------RFERSVTGS 213
Query: 238 VKEV-KLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGD 296
           V  V  L DG  + AD+VVVG+G     +L +        GI  D + +T+  DVYA+GD
Sbjct: 214 VDGVVLLDDGTRIAADMVVVGIGVLANDALARAAGLACDDGIFVDAYGRTTCPDVYALGD 273
Query: 297 VATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQ 356
           V      L     R+E   +A+       + ++      T  GY  LP+++S    L  Q
Sbjct: 274 VTRQRNPLSGRFERIETWSNAQNQGIAVARHLV----DPTAPGYAELPWYWSDQGALRIQ 329
Query: 357 FYGDNVGD-TVLFGDNDLASATHKFGTYWIKDGKVVG 392
             G   GD  ++ G+  L +   KF    ++ G++VG
Sbjct: 330 VAGLASGDEEIVRGEVSLDAP--KFTLIELQKGRIVG 364

>pdb|3EF6|A Chain A, Crystal Structure Of Toluene 2,3-Dioxygenase Reductase Length = 410

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 131/295 (44%), Gaps = 20/295 (6%)
Query: 10  ILGGGVSAGYAAREFAKQGVKPGELAIISKEVA-PYERPALSKAYLFPEGTARLPGFHVC 68
           I+G GV     A+    +G + G +++I  E   PY+RP+LSKA L  +G+   P     
Sbjct: 7   IIGNGVGGFTTAQALRAEGFE-GRISLIGDEPHLPYDRPSLSKAVL--DGSLERPPILAE 63
Query: 69  VGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRL 128
                     +WY E  I+++   E+   D+ ++T+    G       +VIATGS   R 
Sbjct: 64  A---------DWYGEARIDMLTGPEVTALDVQTRTISLDDGTTLSADAIVIATGS---RA 111
Query: 129 TDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKINNIDV 188
               + G+    +  LR   D   L +                 IG E++   +   + V
Sbjct: 112 RTMALPGSQLPGVVTLRTYGDVQVLRDSWTSATRLLIVGGG--LIGCEVATTARKLGLSV 169
Query: 189 SMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRT 248
           +++      + R+    I A+  G     G+++  GT  VGF+   +G++++V   DGR+
Sbjct: 170 TILEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFS--GEGQLEQVMASDGRS 227
Query: 249 LEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMK 303
             AD  ++ VG  P   L +        G+  D    T A  V+AVGDVA++P++
Sbjct: 228 FVADSALICVGAEPADQLARQAGLACDRGVIVDHCGATLAKGVFAVGDVASWPLR 282

>pdb|1GV4|A Chain A, Murine Apoptosis-Inducing Factor (Aif) Length = 528

Iteration: 1
 Score = 81.6 bits (200), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 98/362 (27%), Positives = 154/362 (42%), Gaps = 54/362 (14%)
Query: 31  PGELAIISKEVA--PYERPALSKAYLFPEGTARLPGFHVCVGSGGERLL----PEWY--- 81
           PG   +I  E    PY RP LSK   F +             +G ER +    P +Y   
Sbjct: 72  PGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLQFRQWNGKERSIYFQPPSFYVSA 131
Query: 82  ------KEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEG 135
                 +  G+ ++   ++V  D+    +    G    ++  +IATG T   L+     G
Sbjct: 132 QDLPNIENGGVAVLTGKKVVHLDVRGNMVKLNDGSQITFEKCLIATGGTPRSLSAIDRAG 191
Query: 136 ADAKNIFYL-REIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAAL----KINNIDVSM 190
           A+ K+   L R+I D   L                  ++G EL+ AL    + + I+V  
Sbjct: 192 AEVKSRTTLFRKIGDFRAL--EKISREVKSITVIGGGFLGSELACALGRKSQASGIEVIQ 249
Query: 191 VYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLE 250
           ++PE   M ++    ++ +       +G+K++    A+  +    G    +KLKDGR +E
Sbjct: 250 LFPEKGNMGKILPQYLSNWTMEKVKREGVKVMPN--AIVQSVGVSGGRLLIKLKDGRKVE 307
Query: 251 ADIVVVGVGGRPLISLFKGQVAENKGGIETD-DF--FKTSAD-----DVYAVGDVATF-P 301
            D +V  VG  P + L K       GG+E D DF  F+ +A+     +++  GD A F  
Sbjct: 308 TDHIVTAVGLEPNVELAK------TGGLEIDSDFGGFRVNAELQARSNIWVAGDAACFYD 361
Query: 302 MKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDN 361
           +KL R  RRVEH DHA  S   A         G+ +TG    PY++   F   W   G +
Sbjct: 362 IKLGR--RRVEHHDHAVVSGRLA---------GENMTGAAK-PYWHQSMF---WSDLGPD 406
Query: 362 VG 363
           VG
Sbjct: 407 VG 408

>pdb|3GD3|A Chain A, Crystal Structure Of A Naturally Folded Murine Apoptosis Inducing Factor Length = 535

Iteration: 1
 Score = 81.3 bits (199), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 98/362 (27%), Positives = 154/362 (42%), Gaps = 54/362 (14%)
Query: 31  PGELAIISKEVA--PYERPALSKAYLFPEGTARLPGFHVCVGSGGERLL----PEWY--- 81
           PG   +I  E    PY RP LSK   F +             +G ER +    P +Y   
Sbjct: 77  PGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLQFRQWNGKERSIYFQPPSFYVSA 136
Query: 82  ------KEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEG 135
                 +  G+ ++   ++V  D+    +    G    ++  +IATG T   L+     G
Sbjct: 137 QDLPNIENGGVAVLTGKKVVHLDVRGNMVKLNDGSQITFEKCLIATGGTPRSLSAIDRAG 196
Query: 136 ADAKNIFYL-REIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAAL----KINNIDVSM 190
           A+ K+   L R+I D   L                  ++G EL+ AL    + + I+V  
Sbjct: 197 AEVKSRTTLFRKIGDFRAL--EKISREVKSITVIGGGFLGSELACALGRKSQASGIEVIQ 254
Query: 191 VYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLE 250
           ++PE   M ++    ++ +       +G+K++    A+  +    G    +KLKDGR +E
Sbjct: 255 LFPEKGNMGKILPQYLSNWTMEKVKREGVKVMPN--AIVQSVGVSGGRLLIKLKDGRKVE 312
Query: 251 ADIVVVGVGGRPLISLFKGQVAENKGGIETD-DF--FKTSAD-----DVYAVGDVATF-P 301
            D +V  VG  P + L K       GG+E D DF  F+ +A+     +++  GD A F  
Sbjct: 313 TDHIVTAVGLEPNVELAK------TGGLEIDSDFGGFRVNAELQARSNIWVAGDAACFYD 366
Query: 302 MKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDN 361
           +KL R  RRVEH DHA  S   A         G+ +TG    PY++   F   W   G +
Sbjct: 367 IKLGR--RRVEHHDHAVVSGRLA---------GENMTGAAK-PYWHQSMF---WSDLGPD 411
Query: 362 VG 363
           VG
Sbjct: 412 VG 413

>pdb|3GD4|A Chain A, Crystal Structure Of The Reduced, Nad-Bound Form Of Murine Apoptosis Inducing Factor Length = 511

Iteration: 1
 Score = 81.3 bits (199), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 98/362 (27%), Positives = 154/362 (42%), Gaps = 54/362 (14%)
Query: 31  PGELAIISKEVA--PYERPALSKAYLFPEGTARLPGFHVCVGSGGERLL----PEWY--- 81
           PG   +I  E    PY RP LSK   F +             +G ER +    P +Y   
Sbjct: 53  PGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLQFRQWNGKERSIYFQPPSFYVSA 112
Query: 82  ------KEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEG 135
                 +  G+ ++   ++V  D+    +    G    ++  +IATG T   L+     G
Sbjct: 113 QDLPNIENGGVAVLTGKKVVHLDVRGNMVKLNDGSQITFEKCLIATGGTPRSLSAIDRAG 172
Query: 136 ADAKNIFYL-REIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAAL----KINNIDVSM 190
           A+ K+   L R+I D   L                  ++G EL+ AL    + + I+V  
Sbjct: 173 AEVKSRTTLFRKIGDFRAL--EKISREVKSITVIGGGFLGSELACALGRKSQASGIEVIQ 230
Query: 191 VYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLE 250
           ++PE   M ++    ++ +       +G+K++    A+  +    G    +KLKDGR +E
Sbjct: 231 LFPEKGNMGKILPQYLSNWTMEKVKREGVKVMPN--AIVQSVGVSGGRLLIKLKDGRKVE 288
Query: 251 ADIVVVGVGGRPLISLFKGQVAENKGGIETD-DF--FKTSAD-----DVYAVGDVATF-P 301
            D +V  VG  P + L K       GG+E D DF  F+ +A+     +++  GD A F  
Sbjct: 289 TDHIVTAVGLEPNVELAK------TGGLEIDSDFGGFRVNAELQARSNIWVAGDAACFYD 342
Query: 302 MKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDN 361
           +KL R  RRVEH DHA  S   A         G+ +TG    PY++   F   W   G +
Sbjct: 343 IKLGR--RRVEHHDHAVVSGRLA---------GENMTGAAK-PYWHQSMF---WSDLGPD 387
Query: 362 VG 363
           VG
Sbjct: 388 VG 389

>pdb|4FDC|B Chain B, Crystal Structure Of The E493v Mutant Of Human Apoptosis Inducing Factor (Aif) Length = 514

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 99/364 (27%), Positives = 158/364 (43%), Gaps = 58/364 (15%)
Query: 31  PGELAIISKEVA--PYERPALSKAYLFPEGTARLPGFHVCVGSGGERLL----PEWY--- 81
           PG   +I  E    PY RP LSK   F +             +G ER +    P +Y   
Sbjct: 53  PGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSFYVSA 112
Query: 82  ------KEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEG 135
                 +  G+ ++   ++V+ D+    +    G    Y+  +IATG T   L+     G
Sbjct: 113 QDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAG 172
Query: 136 ADAKNIFYL-REIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAAL----KINNIDVSM 190
           A+ K+   L R+I D   L                  ++G EL+ AL    +    +V  
Sbjct: 173 AEVKSRTTLFRKIGDFRSL--EKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQ 230
Query: 191 VYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTV--AVGFTTNADGEVKEVKLKDGRT 248
           ++PE   M ++    ++ +       +G+K++   +  +VG ++   G++  +KLKDGR 
Sbjct: 231 LFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGVSS---GKLL-IKLKDGRK 286
Query: 249 LEADIVVVGVGGRPLISLFKGQVAENKGGIETD-DF--FKTSAD-----DVYAVGDVATF 300
           +E D +V  VG  P + L K       GG+E D DF  F+ +A+     +++  GD A F
Sbjct: 287 VETDHIVAAVGLEPNVELAK------TGGLEIDSDFGGFRVNAELQARSNIWVAGDAACF 340
Query: 301 -PMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYG 359
             +KL R  RRVEH DHA  S   A         G+ +TG    PY++   F   W   G
Sbjct: 341 YDIKLGR--RRVEHHDHAVVSGRLA---------GENMTGAAK-PYWHQSMF---WSDLG 385
Query: 360 DNVG 363
            +VG
Sbjct: 386 PDVG 389

>pdb|1M6I|A Chain A, Crystal Structure Of Apoptosis Inducing Factor (Aif) Length = 493

Iteration: 1
 Score = 79.0 bits (193), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 99/364 (27%), Positives = 158/364 (43%), Gaps = 58/364 (15%)
Query: 31  PGELAIISKEVA--PYERPALSKAYLFPEGTARLPGFHVCVGSGGERLL----PEWY--- 81
           PG   +I  E    PY RP LSK   F +             +G ER +    P +Y   
Sbjct: 35  PGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSFYVSA 94
Query: 82  ------KEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEG 135
                 +  G+ ++   ++V+ D+    +    G    Y+  +IATG T   L+     G
Sbjct: 95  QDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAG 154
Query: 136 ADAKNIFYL-REIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAAL----KINNIDVSM 190
           A+ K+   L R+I D   L                  ++G EL+ AL    +    +V  
Sbjct: 155 AEVKSRTTLFRKIGDFRSL--EKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQ 212
Query: 191 VYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTV--AVGFTTNADGEVKEVKLKDGRT 248
           ++PE   M ++    ++ +       +G+K++   +  +VG ++   G++  +KLKDGR 
Sbjct: 213 LFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGVSS---GKLL-IKLKDGRK 268
Query: 249 LEADIVVVGVGGRPLISLFKGQVAENKGGIETD-DF--FKTSAD-----DVYAVGDVATF 300
           +E D +V  VG  P + L K       GG+E D DF  F+ +A+     +++  GD A F
Sbjct: 269 VETDHIVAAVGLEPNVELAK------TGGLEIDSDFGGFRVNAELQARSNIWVAGDAACF 322
Query: 301 -PMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYG 359
             +KL R  RRVEH DHA  S   A         G+ +TG    PY++   F   W   G
Sbjct: 323 YDIKLGR--RRVEHHDHAVVSGRLA---------GENMTGAAK-PYWHQSMF---WSDLG 367
Query: 360 DNVG 363
            +VG
Sbjct: 368 PDVG 371

>pdb|2CDU|A Chain A, The Crystal Structure Of Water-Forming Nad(P)h Oxidase From Lactobacillus Sanfranciscensis Length = 452

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 101/227 (44%), Gaps = 13/227 (5%)
Query: 78  PEWYKEKGIELILSTEIVRADIASKT-----LLSATGLIFKYQILVIATGSTVLRLTDFG 132
           PE     G  + +  ++   D  +KT     L++       Y  L++ TGS   + T   
Sbjct: 65  PEELSNLGANVQMRHQVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGS---KPTVPP 121
Query: 133 VEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKINNIDVSMVY 192
           + G D+  ++  +  +DA KL E                YIG EL+ A    N +V+++ 
Sbjct: 122 IPGIDSSRVYLCKNYNDAKKLFEEAPKAKTITIIGSG--YIGAELAEAYSNQNYNVNLID 179
Query: 193 PEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEAD 252
                + + F  +        Y   G+ ++ G+    F    D E+   K  DG+ +++D
Sbjct: 180 GHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFE-EVDDEII-TKTLDGKEIKSD 237
Query: 253 IVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTSADDVYAVGDVA 298
           I ++ +G RP   L KG+VA  + G I TD++  +S  D++A GD A
Sbjct: 238 IAILCIGFRPNTELLKGKVAMLDNGAIITDEYMHSSNRDIFAAGDSA 284

>pdb|1NHR|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox Centre In Enterococcal Nadh Peroxidase To A Disulfide Length = 447

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 112/264 (42%), Gaps = 28/264 (10%)
Query: 79  EWYKEKGIELILSTEIV-----RADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGV 133
           E  + +G+ +  +TEI         +  K L+S    +  Y  L+I+ G+    L    +
Sbjct: 64  EKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFEL---DI 120
Query: 134 EGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAAL-----KINNIDV 188
            G D  NI+ +R    A KL +                YIG+E + A      K+  ID+
Sbjct: 121 PGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDI 180
Query: 189 SMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN---ADGEVKEVKLKD 245
            +  P    + + FT       E   AN        T+A G T      DG V++V + D
Sbjct: 181 -LDRPLGVYLDKEFTD---VLTEEMEANNI------TIATGETVERYEGDGRVQKV-VTD 229
Query: 246 GRTLEADIVVVGVGGRPLISLFKGQVAENKGG-IETDDFFKTSADDVYAVGDVATFPMKL 304
               +AD+VVV VG RP  +  KG +  +  G I+TD++ +TS  DV+AVGD        
Sbjct: 230 KNAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNP 289
Query: 305 YREMRRVEHVDHARKSAEQAVKTI 328
                 +    +ARK    AVK +
Sbjct: 290 ADTEVNIALATNARKQGRFAVKNL 313

>pdb|1NHS|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox Centre In Enterococcal Nadh Peroxidase To A Disulfide Length = 447

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 112/264 (42%), Gaps = 28/264 (10%)
Query: 79  EWYKEKGIELILSTEIV-----RADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGV 133
           E  + +G+ +  +TEI         +  K L+S    +  Y  L+I+ G+    L    +
Sbjct: 64  EKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFEL---DI 120
Query: 134 EGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAAL-----KINNIDV 188
            G D  NI+ +R    A KL +                YIG+E + A      K+  ID+
Sbjct: 121 PGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDI 180
Query: 189 SMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN---ADGEVKEVKLKD 245
            +  P    + + FT       E   AN        T+A G T      DG V++V + D
Sbjct: 181 -LDRPLGVYLDKEFTD---VLTEEMEANNI------TIATGETVERYEGDGRVQKV-VTD 229
Query: 246 GRTLEADIVVVGVGGRPLISLFKGQVAENKGG-IETDDFFKTSADDVYAVGDVATFPMKL 304
               +AD+VVV VG RP  +  KG +  +  G I+TD++ +TS  DV+AVGD        
Sbjct: 230 KNAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNP 289
Query: 305 YREMRRVEHVDHARKSAEQAVKTI 328
                 +    +ARK    AVK +
Sbjct: 290 ADTEVNIALATNARKQGRFAVKNL 313

>pdb|1JOA|A Chain A, Nadh Peroxidase With Cysteine-Sulfenic Acid Length = 447

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 112/264 (42%), Gaps = 28/264 (10%)
Query: 79  EWYKEKGIELILSTEIV-----RADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGV 133
           E  + +G+ +  +TEI         +  K L+S    +  Y  L+I+ G+    L    +
Sbjct: 64  EKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFEL---DI 120
Query: 134 EGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAAL-----KINNIDV 188
            G D  NI+ +R    A KL +                YIG+E + A      K+  ID+
Sbjct: 121 PGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDI 180
Query: 189 SMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN---ADGEVKEVKLKD 245
            +  P    + + FT       E   AN        T+A G T      DG V++V + D
Sbjct: 181 -LDRPLGVYLDKEFTD---VLTEEMEANNI------TIATGETVERYEGDGRVQKV-VTD 229
Query: 246 GRTLEADIVVVGVGGRPLISLFKGQVAENKGG-IETDDFFKTSADDVYAVGDVATFPMKL 304
               +AD+VVV VG RP  +  KG +  +  G I+TD++ +TS  DV+AVGD        
Sbjct: 230 KNAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNP 289
Query: 305 YREMRRVEHVDHARKSAEQAVKTI 328
                 +    +ARK    AVK +
Sbjct: 290 ADTEVNIALATNARKQGRFAVKNL 313

>pdb|1NHQ|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And Cys42ser Mutants: Active Site Structure, Mechanistic Implications, And An Unusual Environment Of Arg303 Length = 447

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 112/264 (42%), Gaps = 28/264 (10%)
Query: 79  EWYKEKGIELILSTEIV-----RADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGV 133
           E  + +G+ +  +TEI         +  K L+S    +  Y  L+I+ G+    L    +
Sbjct: 64  EKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFEL---DI 120
Query: 134 EGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAAL-----KINNIDV 188
            G D  NI+ +R    A KL +                YIG+E + A      K+  ID+
Sbjct: 121 PGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDI 180
Query: 189 SMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN---ADGEVKEVKLKD 245
            +  P    + + FT       E   AN        T+A G T      DG V++V + D
Sbjct: 181 -LDRPLGVYLDKEFTD---VLTEEMEANNI------TIATGETVERYEGDGRVQKV-VTD 229
Query: 246 GRTLEADIVVVGVGGRPLISLFKGQVAENKGG-IETDDFFKTSADDVYAVGDVATFPMKL 304
               +AD+VVV VG RP  +  KG +  +  G I+TD++ +TS  DV+AVGD        
Sbjct: 230 KNAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNP 289
Query: 305 YREMRRVEHVDHARKSAEQAVKTI 328
                 +    +ARK    AVK +
Sbjct: 290 ADTEVNIALATNARKQGRFAVKNL 313

>pdb|1NHP|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And Cys42ser Mutants: Active Site Structure, Mechanistic Implications, And An Unusual Environment Of Arg303 Length = 447

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 112/264 (42%), Gaps = 28/264 (10%)
Query: 79  EWYKEKGIELILSTEIV-----RADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGV 133
           E  + +G+ +  +TEI         +  K L+S    +  Y  L+I+ G+    L    +
Sbjct: 64  EKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFEL---DI 120
Query: 134 EGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAAL-----KINNIDV 188
            G D  NI+ +R    A KL +                YIG+E + A      K+  ID+
Sbjct: 121 PGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDI 180
Query: 189 SMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN---ADGEVKEVKLKD 245
            +  P    + + FT       E   AN        T+A G T      DG V++V + D
Sbjct: 181 -LDRPLGVYLDKEFTD---VLTEEMEANNI------TIATGETVERYEGDGRVQKV-VTD 229
Query: 246 GRTLEADIVVVGVGGRPLISLFKGQVAENKGG-IETDDFFKTSADDVYAVGDVATFPMKL 304
               +AD+VVV VG RP  +  KG +  +  G I+TD++ +TS  DV+AVGD        
Sbjct: 230 KNAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNP 289
Query: 305 YREMRRVEHVDHARKSAEQAVKTI 328
                 +    +ARK    AVK +
Sbjct: 290 ADTEVNIALATNARKQGRFAVKNL 313

>pdb|1F8W|A Chain A, Crystal Structure Of Nadh Peroxidase Mutant: R303m Length = 447

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 121/285 (42%), Gaps = 35/285 (12%)
Query: 79  EWYKEKGIELILSTEIV-----RADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGV 133
           E  + +G+ +  +TEI         +  K L+S    +  Y  L+I+ G+    L    +
Sbjct: 64  EKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFEL---DI 120
Query: 134 EGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAAL-----KINNIDV 188
            G D  NI+ +R    A KL +                YIG+E + A      K+  ID+
Sbjct: 121 PGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDI 180
Query: 189 SMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN---ADGEVKEVKLKD 245
            +  P    + + FT       E   AN        T+A G T      DG V++V + D
Sbjct: 181 -LDRPLGVYLDKEFTD---VLTEEMEANNI------TIATGETVERYEGDGRVQKV-VTD 229
Query: 246 GRTLEADIVVVGVGGRPLISLFKGQVAENKGG-IETDDFFKTSADDVYAVGDV------- 297
               +AD+VVV VG RP  +  KG +  +  G I+TD++ +TS  DV+AVGD        
Sbjct: 230 KNAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNP 289
Query: 298 ATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDY 342
           A   + +      ++    A K+ E+ VK     +G   +  +DY
Sbjct: 290 ADTEVNIALATNAMKQGRFAVKNLEEPVKPFPGVQGSSGLAVFDY 334

>pdb|1XHC|A Chain A, Nadh Oxidase /nitrite Reductase From Pyrococcus Furiosus Pfu-1140779- 001 Length = 367

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 126/300 (42%), Gaps = 43/300 (14%)
Query: 7   KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPY-ERPALSK--AYLFPEGTARLP 63
           K VI+G G   G+   E AKQ  +  E+ +I KE  PY  +P LS   A   P       
Sbjct: 10  KVVIVGNG-PGGF---ELAKQLSQTYEVTVIDKEPVPYYSKPMLSHYIAGFIPRN----- 60
Query: 64  GFHVCVGSGGERLLP---EWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIA 120
                      RL P   +WY+++GIE+ L+ E    D   K +++  G +  Y  LV+A
Sbjct: 61  -----------RLFPYSLDWYRKRGIEIRLAEEAKLIDRGRKVVITEKGEV-PYDTLVLA 108
Query: 121 TGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAA 180
           TG+   R  +  ++G +   +  LR I DAD++ E                   LEL+  
Sbjct: 109 TGA---RAREPQIKGKEY--LLTLRTIFDADRIKESIENSGEAIIIGGGFIG--LELAGN 161
Query: 181 LKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE 240
           L      V +++     +      +++   +      G+K    +  +    N +G    
Sbjct: 162 LAEAGYHVKLIHRGAMFLG--LDEELSNMIKDMLEETGVKFFLNSELL--EANEEG---- 213
Query: 241 VKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATF 300
             L +   +E  + +  +G  P + L +        GI  DD F+TSA DVYA+GD A +
Sbjct: 214 -VLTNSGFIEGKVKICAIGIVPNVDLARRSGIHTGRGILIDDNFRTSAKDVYAIGDCAEY 272

>pdb|2QAE|A Chain A, Crystal Structure Analysis Of Trypanosoma Cruzi Lipoamide Dehydrogenase Length = 468

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/131 (35%), Positives = 68/131 (51%), Gaps = 6/131 (4%)
Query: 173 IGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 232
           IGLEL +       +V++V   P C P L      A       N+ +K +  T  VG T 
Sbjct: 185 IGLELGSVWARLGAEVTVVEFAPRCAPTLDEDVTNALVGALAKNEKMKFMTSTKVVGGTN 244
Query: 233 NADGEVKEVKLKDGR--TLEADIVVVGVGGRPL---ISLFKGQVAEN-KGGIETDDFFKT 286
           N D    EV+ K+G+  T+  + ++V VG RP    + L K  VA+N +G ++  D F+T
Sbjct: 245 NGDSVSLEVEGKNGKRETVTCEALLVSVGRRPFTGGLGLDKINVAKNERGFVKIGDHFET 304
Query: 287 SADDVYAVGDV 297
           S  DVYA+GDV
Sbjct: 305 SIPDVYAIGDV 315

>pdb|3CGC|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis Coenzyme A- Disulfide Reductase: A Structural Analysis Of Dual Nad(p)h Specificity Length = 480

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 128/307 (41%), Gaps = 31/307 (10%)
Query: 5   SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPG 64
           S  YVI+GG  +AG +A   A Q V+  E A +           L K  ++      LP 
Sbjct: 36  SMNYVIIGGD-AAGMSA---AMQIVRNDENANVV---------TLEKGEIYSYAQCGLPY 82
Query: 65  FHVCVGSGGERLLP---EWYKEK-GIELILSTEIVRADIASKTLLSATGLI-----FKYQ 115
                 +  E+L+    + +++K GI+  +  E+ + D   K + +          F Y 
Sbjct: 83  VISGAIASTEKLIARNVKTFRDKYGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYD 142
Query: 116 ILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGL 175
            L+IATG   +R      EG D + +  L+ I DA+++++                 IGL
Sbjct: 143 RLLIATG---VRPVMPEWEGRDLQGVHLLKTIPDAERILKTLETNKVEDVTIIGGGAIGL 199
Query: 176 ELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD 235
           E++         V M+      +  ++  D+A +         I+I+       F  N  
Sbjct: 200 EMAETFVELGKKVRMIERNDH-IGTIYDGDMAEYIYKEADKHHIEILTNENVKAFKGNER 258
Query: 236 GEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQ--VAENKGGIETDDFFKTSADDVYA 293
            E  E    D  T +AD+V+V VG +P     +G      +KG IE + + +T+  DVYA
Sbjct: 259 VEAVET---DKGTYKADLVLVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYMQTNVQDVYA 315
Query: 294 VGDVATF 300
            GD AT 
Sbjct: 316 AGDCATH 322

>pdb|3IWA|A Chain A, Crystal Structure Of A Fad-Dependent Pyridine Nucleotide-Disulphide Oxidoreductase From Desulfovibrio Vulgaris Length = 472

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 100/233 (42%), Gaps = 14/233 (6%)
Query: 78  PEWYK-EKGIELILSTEIVRADIASKT-----LLSATGLIFKYQILVIATGSTVLRLTDF 131
           PE+++  K +E ++ T     D A+ T     L +      KY  LV+A GS   R    
Sbjct: 72  PEFFRINKDVEALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSKANRPP-- 129
Query: 132 GVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAAL-KINNIDVSM 190
            VEG D   +  +  +D+A+ +                  +IGLE++ +L  +  ID ++
Sbjct: 130 -VEGMDLAGVTPVTNLDEAEFVQHAISAGEVSKAVIVGGGFIGLEMAVSLADMWGIDTTV 188
Query: 191 VYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLE 250
           V      MP   +  ++           + +  G   V      +G+V  V + D RTL+
Sbjct: 189 VELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLE-GENGKVARV-ITDKRTLD 246
Query: 251 ADIVVVGVGGRPLISLFK--GQVAENKGGIETDDFFKTSADDVYAVGDVATFP 301
           AD+V++  G  P   L +  G   + +G I  D   +TS  D++A GD  T P
Sbjct: 247 ADLVILAAGVSPNTQLARDAGLELDPRGAIIVDTRMRTSDPDIFAGGDCVTIP 299

>pdb|3KLJ|A Chain A, Crystal Structure Of Nadh:rubredoxin Oxidoreductase From Clostridium Acetobutylicum Length = 385

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 127/299 (42%), Gaps = 39/299 (13%)
Query: 4   KSFKYVILGGGVSAGYAAREFAKQGV-KPGELAIISKE-VAPYERPALSKAYLFPEGTAR 61
           KS K +ILG G  AG++A   AK  + K  ++ +I+ E   PY RP L+      E  A+
Sbjct: 8   KSTKILILGAG-PAGFSA---AKAALGKCDDITMINSEKYLPYYRPRLN------EIIAK 57
Query: 62  LPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIAT 121
                  +    +     WY++  I++I S      D  +K +   +G   KY+ L+IA+
Sbjct: 58  NKSIDDILIKKND-----WYEKNNIKVITSEFATSIDPNNKLVTLKSGEKIKYEKLIIAS 112
Query: 122 GSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAAL 181
           GS   ++    V  AD   IF L   DDA K+ +                   +EL+ A+
Sbjct: 113 GSIANKIK---VPHADE--IFSLYSYDDALKIKDECKNKGKAFIIGGGILG--IELAQAI 165
Query: 182 KINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEV 241
             +    S+     + + R    D   F +      GIKI          TN++ E    
Sbjct: 166 IDSGTPASIGIILEYPLERQLDRDGGLFLKDKLDRLGIKI---------YTNSNFE---- 212
Query: 242 KLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATF 300
             + G  + +  V+  VG +P +   K     +K GI  +D  +TS  D+YA GDVA F
Sbjct: 213 --EMGDLIRSSCVITAVGVKPNLDFIKDTEIASKRGILVNDHMETSIKDIYACGDVAEF 269

>pdb|1MO9|A Chain A, Nadph Dependent 2-Ketopropyl Coenzyme M OxidoreductaseCARBOXYLASE Complexed With 2-Ketopropyl Coenzyme M Length = 523

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 77/318 (24%), Positives = 131/318 (41%), Gaps = 39/318 (12%)
Query: 49  LSKAYLFPEGTARLPGFHVCVG------SGGERLLPEWYKEK-GIELILSTEIVRADIAS 101
            S  Y FP+ T ++ G    V       +G   ++    KE+  +E IL+     A +  
Sbjct: 106 FSGQYWFPDMTEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCP---AKVID 162
Query: 102 KTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEXXXXXX 161
              + A G +FK + L++A G+    L    V G +AK +F      D   LVE      
Sbjct: 163 NHTVEAAGKVFKAKNLILAVGAGPGTLD---VPGVNAKGVF------DHATLVEELDYEP 213
Query: 162 XXXXXXXXXXYIGLELSAALK-INNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIK 220
                        +E            V +V  EP  + +    +  A+       +G++
Sbjct: 214 GSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIK--DNETRAYVLDRMKEQGME 271
Query: 221 IIKGTVAVGFTTNADGEVKEV--KLKDGRT-LEADIVVVGVGGRPL---ISLFKGQVAEN 274
           II G+       +A+G V+ V     +G   +E D V +G+G +P    ++   G     
Sbjct: 272 IISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRSAELAKILGLDLGP 331
Query: 275 KGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGG 334
           KG +  +++ +TS  +VYAVGD+   PM++++          ARKS   A + +M  +  
Sbjct: 332 KGEVLVNEYLQTSVPNVYAVGDLIGGPMEMFK----------ARKSGCYAARNVMGEKIS 381
Query: 335 KTVTGY-DYLPYFYSRAF 351
            T   Y D+L   Y  +F
Sbjct: 382 YTPKNYPDFLHTHYEVSF 399

>pdb|2V3A|A Chain A, Crystal Structure Of Rubredoxin Reductase From Pseudomonas Aeruginosa. Length = 384

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 81/188 (43%), Gaps = 11/188 (5%)
Query: 113 KYQILVIATGSTVLRLTDFGVEGADAKNIFY-LREIDDADKLVEXXXXXXXXXXXXXXXX 171
           +Y+ LV+A G+  +R+    VEG DA++  Y + +++D  +  +                
Sbjct: 101 RYRDLVLAWGAEPIRVP---VEG-DAQDALYPINDLEDYARFRQAAAGKRRVLLLGAG-- 154
Query: 172 YIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFT 231
            IG E +  L      + +V P    MP L     A   +      G++   G V     
Sbjct: 155 LIGCEFANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLK 214
Query: 232 TNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISL-FKGQVAENKGGIETDDFFKTSADD 290
               GE  E  L DG  +  D+VV  VG RP   L F   +A N+ GI  D   +TS  +
Sbjct: 215 KA--GEGLEAHLSDGEVIPCDLVVSAVGLRPRTELAFAAGLAVNR-GIVVDRSLRTSHAN 271
Query: 291 VYAVGDVA 298
           +YA+GD A
Sbjct: 272 IYALGDCA 279

>pdb|3ICR|A Chain A, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd Length = 588

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 91/187 (48%), Gaps = 13/187 (6%)
Query: 114 YQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYI 173
           Y +L+++ G+  +  +  G+E  +AK +F LR + D D++                  +I
Sbjct: 141 YDVLILSPGAKPIVPSIPGIE--EAKALFTLRNVPDTDRIKAYIDEKKPRHATVIGGGFI 198
Query: 174 GLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKII--KGTVAVGFT 231
           G+E    L+   I+V++V       P +   + AA+   +  N  ++++   G  A+   
Sbjct: 199 GVEXVENLRERGIEVTLVEXANQVXPPI-DYEXAAYVHEHXKNHDVELVFEDGVDAL--- 254
Query: 232 TNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQ--VAENKGGIETDDFFKTSAD 289
              +G V  V+LK G  ++ D +++ +G +P  SL KG       +G I+ ++ F+TS  
Sbjct: 255 -EENGAV--VRLKSGSVIQTDXLILAIGVQPESSLAKGAGLALGVRGTIKVNEKFQTSDP 311
Query: 290 DVYAVGD 296
            +YA+GD
Sbjct: 312 HIYAIGD 318

>pdb|3NTD|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent Persulfide Reductase C531s Mutant Length = 565

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 104/244 (42%), Gaps = 29/244 (11%)
Query: 78  PEWYKEK-GIELILSTEIVRADIASK-----TLLSATGLIFKYQILVIATGSTVLRLTDF 131
           PE +K +  +E+ +  E+V  D A+K      LL  +     Y  L+++ G+  +     
Sbjct: 64  PESFKARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIVPP-- 121
Query: 132 GVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKINNIDVSMV 191
            + G D      LR I D D++++                +IGLE+  +L    I  +++
Sbjct: 122 -IPGVDNPLTHSLRNIPDMDRILQTIQMNNVEHATVVGGGFIGLEMMESLHHLGIKTTLL 180
Query: 192 YPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGT--------VAVGFTTNADGE------ 237
                 M  +   ++A F      ++G+ +  GT        V     ++A GE      
Sbjct: 181 ELADQVMTPV-DREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQH 239
Query: 238 VK---EVKLKDGRTLEADIVVVGVGGRPLISLFK--GQVAENKGGIETDDFFKTSADDVY 292
           +K    + L +G  LE D++++ +G RP   L +  G      GGI+ +   +TS   +Y
Sbjct: 240 IKGHLSLTLSNGELLETDLLIMAIGVRPETQLARDAGLAIGELGGIKVNAMMQTSDPAIY 299
Query: 293 AVGD 296
           AVGD
Sbjct: 300 AVGD 303

>pdb|1LVL|A Chain A, The Refined Structure Of Pseudomonas Putida Lipoamide Dehydrogenase Complexed With Nad+ At 2.45 Angstroms Resolution Length = 458

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 69/150 (46%), Gaps = 14/150 (9%)
Query: 172 YIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFT 231
           YIGLEL  A +     VS+V      +P  + +++ A         GI +  G    G+ 
Sbjct: 181 YIGLELGIAYRKLGAQVSVVEARERILPT-YDSELTAPVAESLKKLGIALHLGHSVEGYE 239
Query: 232 TNA----DGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAE---NKGGIETDDFF 284
                  DG+  +++L      EAD V+V VG RP    F  +  +   N   I  D+  
Sbjct: 240 NGCLLANDGKGGQLRL------EADRVLVAVGRRPRTKGFNLECLDLKMNGAAIAIDERC 293
Query: 285 KTSADDVYAVGDVATFPMKLYREMRRVEHV 314
           +TS  +V+A+GDVA  PM  +R M + E V
Sbjct: 294 QTSMHNVWAIGDVAGEPMLAHRAMAQGEMV 323

>pdb|3CGB|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis Coenzyme A- Disulfide Reductase: A Structural Analysis Of Dual Nad(P)h Specificity Length = 480

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 93/228 (40%), Gaps = 24/228 (10%)
Query: 85  GIELILSTEIVRADIASKTLLSATGLI-----FKYQILVIATGSTVLRLTDFGVEGADAK 139
           GI+  +  E+ + D   K + +          F Y  L+IATG   +R      EG D +
Sbjct: 107 GIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATG---VRPVXPEWEGRDLQ 163
Query: 140 NIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAAL-----KINNIDVSMVYPE 194
            +  L+ I DA+++++                 IGLE +        K+  I+ +     
Sbjct: 164 GVHLLKTIPDAERILKTLETNKVEDVTIIGGGAIGLEXAETFVELGKKVRXIERND---- 219
Query: 195 PWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIV 254
              +  ++  D A +         I+I+       F  N   E  E    D  T +AD+V
Sbjct: 220 --HIGTIYDGDXAEYIYKEADKHHIEILTNENVKAFKGNERVEAVET---DKGTYKADLV 274
Query: 255 VVGVGGRPLISLFKGQ--VAENKGGIETDDFFKTSADDVYAVGDVATF 300
           +V VG +P     +G      +KG IE + + +T+  DVYA GD AT 
Sbjct: 275 LVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYXQTNVQDVYAAGDCATH 322

>pdb|2EQ7|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus Thermophilus Hb8 With Psbdo Length = 455

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 78/183 (42%), Gaps = 24/183 (13%)
Query: 173 IGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 232
           IGLEL         +V ++      +P +   +++   E  +  +G+ I  G        
Sbjct: 178 IGLELGVVWHRLGAEVIVLEYMDRILPTM-DLEVSRAAERVFKKQGLTIRTGVRVTAVVP 236
Query: 233 NADGEVKEVKLKDGRTLEADIVVVGVGGRPL---ISLFK-GQVAENKGGIETDDFFKTSA 288
            A G    V+L+ G  LEAD V+V VG RP    +SL   G   + +G I  D+  +T  
Sbjct: 237 EAKG--ARVELEGGEVLEADRVLVAVGRRPYTEGLSLENAGLSTDERGRIPVDEHLRTRV 294
Query: 289 DDVYAVGDVATFPMKLYRE-----------MRRVEHVDHARKSAEQAVKTIMATEGGKTV 337
             +YA+GDV   PM  ++            +R   HVD+      QA+ +++ T      
Sbjct: 295 PHIYAIGDVVRGPMLAHKASEEGIAAVEHMVRGFGHVDY------QAIPSVVYTHPEIAA 348
Query: 338 TGY 340
            GY
Sbjct: 349 VGY 351

>pdb|2WOI|A Chain A, Trypanothione Reductase From Trypanosoma Brucei Length = 495

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 217 KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS-LFKGQVA--- 272
            GI+I+        + N DG  K V  + G+TL+ D+V++ +G  P  + L  G V    
Sbjct: 248 NGIEIMTNENPAKVSLNTDGS-KHVTFESGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKL 306
Query: 273 ENKGGIETDDFFKTSADDVYAVGDV 297
             KGG++ D+F +T+  ++YA+GD+
Sbjct: 307 TPKGGVQVDEFSRTNVPNIYAIGDI 331

>pdb|2WBA|A Chain A, Properties Of Trypanothione Reductase From T. Brucei Length = 492

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 217 KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS-LFKGQVA--- 272
            GI+I+        + N DG  K V  + G+TL+ D+V++ +G  P  + L  G V    
Sbjct: 245 NGIEIMTNENPAKVSLNTDGS-KHVTFESGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKL 303
Query: 273 ENKGGIETDDFFKTSADDVYAVGDV 297
             KGG++ D+F +T+  ++YA+GD+
Sbjct: 304 TPKGGVQVDEFSRTNVPNIYAIGDI 328

>pdb|1NDA|A Chain A, The Structure Of Trypanosoma Cruzi Trypanothione Reductase In The Oxidized And Nadph Reduced State Length = 491

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 217 KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL---ISLFKGQVAE 273
            GI+I+          NADG  K V  + G+ ++ D+V++ +G  P    + L    V  
Sbjct: 245 NGIQILTKENPAKVELNADGS-KSVTFESGKKMDFDLVMMAIGRSPRTKDLQLQNAGVMI 303
Query: 274 NKGGIETDDFFKTSADDVYAVGDVATFPM 302
             GG++ D++ +T+  ++YA+GDV    M
Sbjct: 304 KNGGVQVDEYSRTNVSNIYAIGDVTNRVM 332

>pdb|1GXF|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione Reductase In Complex With The Inhibitor Quinacrine Mustard Length = 492

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 217 KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL---ISLFKGQVAE 273
            GI+I+          NADG  K V  + G+ ++ D+V++ +G  P    + L    V  
Sbjct: 246 NGIQILTKENPAKVELNADGS-KSVTFESGKKMDFDLVMMAIGRSPRTKDLQLQNAGVMI 304
Query: 274 NKGGIETDDFFKTSADDVYAVGDVATFPM 302
             GG++ D++ +T+  ++YA+GDV    M
Sbjct: 305 KNGGVQVDEYSRTNVSNIYAIGDVTNRVM 333

>pdb|1AOG|A Chain A, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form) Length = 485

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 217 KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL---ISLFKGQVAE 273
            GI+I+          NADG  K V  + G+ ++ D+V++ +G  P    + L    V  
Sbjct: 244 NGIQILTKENPAKVELNADGS-KSVTFESGKKMDFDLVMMAIGRSPRTKDLQLQNAGVMI 302
Query: 274 NKGGIETDDFFKTSADDVYAVGDVATFPM 302
             GG++ D++ +T+  ++YA+GDV    M
Sbjct: 303 KNGGVQVDEYSRTNVSNIYAIGDVTNRVM 331

>pdb|1BZL|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione Reductase In Complex With Trypanothione, And The Structure- Based Discovery Of New Natural Product Inhibitors Length = 486

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 217 KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL---ISLFKGQVAE 273
            GI+I+          NADG  K V  + G+ ++ D+V++ +G  P    + L    V  
Sbjct: 245 NGIQILTKENPAKVELNADGS-KSVTFESGKKMDFDLVMMAIGRSPRTKDLQLQNAGVMI 303
Query: 274 NKGGIETDDFFKTSADDVYAVGDVATFPM 302
             GG++ D++ +T+  ++YA+GDV    M
Sbjct: 304 KNGGVQVDEYSRTNVSNIYAIGDVTNRVM 332

>pdb|3NTA|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent Persulfide Reductase Length = 574

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 102/245 (41%), Gaps = 31/245 (12%)
Query: 78  PEWYKEK-GIELILSTEIVRADIASK-----TLLSATGLIFKYQILVIATGSTVLRLTDF 131
           PE +K +  +E+ +  E+V  D A+K      LL  +     Y  L+++ G+  +     
Sbjct: 64  PESFKARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIVPP-- 121
Query: 132 GVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKINNIDVSMV 191
            + G D      LR I D D++++                +IGLE   +L    I  +++
Sbjct: 122 -IPGVDNPLTHSLRNIPDXDRILQTIQXNNVEHATVVGGGFIGLEXXESLHHLGIKTTLL 180
Query: 192 -YPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGT--------VAVGFTTNADGE----- 237
              +    P     + A F      ++G+ +  GT        V     ++A GE     
Sbjct: 181 ELADQVXTP--VDREXAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQ 238
Query: 238 -VK---EVKLKDGRTLEADIVVVGVGGRPLISLFK--GQVAENKGGIETDDFFKTSADDV 291
            +K    + L +G  LE D+++  +G RP   L +  G      GGI+ +   +TS   +
Sbjct: 239 HIKGHLSLTLSNGELLETDLLIXAIGVRPETQLARDAGLAIGELGGIKVNAXXQTSDPAI 298
Query: 292 YAVGD 296
           YAVGD
Sbjct: 299 YAVGD 303

>pdb|3NT6|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent Persulfide Reductase C43sC531S DOUBLE MUTANT Length = 574

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 102/245 (41%), Gaps = 31/245 (12%)
Query: 78  PEWYKEK-GIELILSTEIVRADIASK-----TLLSATGLIFKYQILVIATGSTVLRLTDF 131
           PE +K +  +E+ +  E+V  D A+K      LL  +     Y  L+++ G+  +     
Sbjct: 64  PESFKARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIVPP-- 121
Query: 132 GVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKINNIDVSMV 191
            + G D      LR I D D++++                +IGLE   +L    I  +++
Sbjct: 122 -IPGVDNPLTHSLRNIPDXDRILQTIQXNNVEHATVVGGGFIGLEXXESLHHLGIKTTLL 180
Query: 192 -YPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGT--------VAVGFTTNADGE----- 237
              +    P     + A F      ++G+ +  GT        V     ++A GE     
Sbjct: 181 ELADQVXTP--VDREXAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQ 238
Query: 238 -VK---EVKLKDGRTLEADIVVVGVGGRPLISLFK--GQVAENKGGIETDDFFKTSADDV 291
            +K    + L +G  LE D+++  +G RP   L +  G      GGI+ +   +TS   +
Sbjct: 239 HIKGHLSLTLSNGELLETDLLIXAIGVRPETQLARDAGLAIGELGGIKVNAXXQTSDPAI 298
Query: 292 YAVGD 296
           YAVGD
Sbjct: 299 YAVGD 303

>pdb|1DXL|A Chain A, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase From Pisum Sativum Length = 470

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 67/146 (45%), Gaps = 16/146 (10%)
Query: 172 YIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFT 231
           YIGLE+ +       +V++V      +P +  A+I   ++     +G+K    T  VG  
Sbjct: 187 YIGLEMGSVWGRIGSEVTVVEFASEIVPTM-DAEIRKQFQRSLEKQGMKFKLKTKVVGVD 245
Query: 232 TNADGEVKEVKLKDG---RTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDF----- 283
           T+ DG    V+   G     +EAD+V+V  G  P    F   +  +K G+ETD       
Sbjct: 246 TSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTP----FTSGLNLDKIGVETDKLGRILV 301
Query: 284 ---FKTSADDVYAVGDVATFPMKLYR 306
              F T+   VYA+GDV   PM  ++
Sbjct: 302 NERFSTNVSGVYAIGDVIPGPMLAHK 327

>pdb|1LPF|A Chain A, Three-Dimensional Structure Of Lipoamide Dehydrogenase From Pseudomonas Fluorescens At 2.8 Angstroms Resolution. Analysis Of Redox And Thermostability Properties Length = 477

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 58/137 (42%), Gaps = 27/137 (19%)
Query: 223 KGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP----LISLFKGQVAENKGGI 278
           K  V V FT +A+GE KE           D ++V VG RP    L++   G   + +G I
Sbjct: 251 KKQVTVTFT-DANGEQKET---------FDKLIVAVGRRPVTTDLLAADSGVTLDERGFI 300
Query: 279 ETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVT 338
             DD  KTS   V+A+GDV    M              A K++E+ V       G K   
Sbjct: 301 YVDDHCKTSVPGVFAIGDVVRGAML-------------AHKASEEGVMVAERIAGHKAQM 347
Query: 339 GYDYLPYFYSRAFDLSW 355
            YD +P       +++W
Sbjct: 348 NYDLIPSVIYTHPEIAW 364

>pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed With The Binding Domain Of The Dihydrolipoamide Acetylase Length = 455

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 64/140 (45%), Gaps = 6/140 (4%)
Query: 172 YIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFT 231
           YIG+EL  A       V+++      +   F   +AA  +     KG++++   +A G  
Sbjct: 180 YIGIELGTAYANFGTKVTILEGAGEILSG-FEKQMAAIIKKRLKKKGVEVVTNALAKGAE 238
Query: 232 TNADGEVKEVKLK-DGRTLEADIVVVGVGGRPLISLFK----GQVAENKGGIETDDFFKT 286
              DG     +   + +T++AD V+V VG RP          G    N+G IE D   +T
Sbjct: 239 EREDGVTVTYEANGETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRT 298
Query: 287 SADDVYAVGDVATFPMKLYR 306
           S  +++A+GD+   P   ++
Sbjct: 299 SVPNIFAIGDIVPGPALAHK 318

>pdb|1JEH|A Chain A, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase Length = 478

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 67/160 (41%), Gaps = 22/160 (13%)
Query: 205 DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRT-----LEADIVVVGVG 259
           ++A   + +   +G+     T  +    N D  V E+ ++D +T     LEA++++V VG
Sbjct: 225 EVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVG 284
Query: 260 GRPLISLFK----GQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVD 315
            RP I+       G   + +G +  DD F +    +  VGDV   PM             
Sbjct: 285 RRPYIAGLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVGDVTFGPML------------ 332
Query: 316 HARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSW 355
            A K+ E+ +  +   + G     Y+ +P       +++W
Sbjct: 333 -AHKAEEEGIAAVEMLKTGHGHVNYNNIPSVMYSHPEVAW 371

>pdb|2BC1|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh Oxidase: C44s Nox Length = 490

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 70/162 (43%), Gaps = 4/162 (2%)
Query: 172 YIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFT 231
           YIG+EL+ A +    +V ++     C+   +  D+           GI++  G       
Sbjct: 204 YIGVELAEAFQRKGKEVVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQLAFGETVKEVA 263
Query: 232 TNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTSADD 290
            N  G+V+++ + D    + D+V++ VG RP  +L  G++     G    +   +TS   
Sbjct: 264 GN--GKVEKI-ITDKNEYDVDMVILAVGFRPNTTLGNGKIDLFRNGAFLVNKRQETSIPG 320
Query: 291 VYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 332
           VYA+GD AT      R+   +    +A ++   A      T+
Sbjct: 321 VYAIGDCATIYDNATRDTNYIALASNAVRTGIVAAHNACGTD 362

>pdb|2BC0|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh Oxidase: Wild-Type Nox Length = 490

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 70/162 (43%), Gaps = 4/162 (2%)
Query: 172 YIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFT 231
           YIG+EL+ A +    +V ++     C+   +  D+           GI++  G       
Sbjct: 204 YIGVELAEAFQRKGKEVVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQLAFGETVKEVA 263
Query: 232 TNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTSADD 290
            N  G+V+++ + D    + D+V++ VG RP  +L  G++     G    +   +TS   
Sbjct: 264 GN--GKVEKI-ITDKNEYDVDMVILAVGFRPNTTLGNGKIDLFRNGAFLVNKRQETSIPG 320
Query: 291 VYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 332
           VYA+GD AT      R+   +    +A ++   A      T+
Sbjct: 321 VYAIGDCATIYDNATRDTNYIALASNAVRTGIVAAHNACGTD 362

>pdb|3URH|A Chain A, Crystal Structure Of A Dihydrolipoamide Dehydrogenase From Sinorhizobium Meliloti 1021 Length = 491

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 20/147 (13%)
Query: 205 DIAAFYEGYYANKGIKIIKGTVAVGFTTNADG---EVKEVKLKDGRTLEADIVVVGVGGR 261
           ++A   +     +GI    G    G   + DG     + VK  +  TL+A++V++  G +
Sbjct: 240 EVAKQLQRXLTKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRK 299
Query: 262 PL---ISLFK-GQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHA 317
           P    + L K G V +++G +E D  F+TS   VYA+GDV   P            + H 
Sbjct: 300 PSTDGLGLAKAGVVLDSRGRVEIDRHFQTSIAGVYAIGDVVRGPX-----------LAHK 348
Query: 318 RKSAEQAVKTIMATEGGKTVTGYDYLP 344
            +    AV  I+A + G     YD +P
Sbjct: 349 AEDEGVAVAEIIAGQAGH--VNYDVIP 373

>pdb|3LAD|A Chain A, Refined Crystal Structure Of Lipoamide Dehydrogenase From Azotobacter Vinelandii At 2.2 Angstroms Resolution. A Comparison With The Structure Of Glutathione Reductase Length = 476

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 74/177 (41%), Gaps = 19/177 (10%)
Query: 173 IGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGF-T 231
           IGLEL +       +V+++      +P +    +A   +     +G+KI+ G    G   
Sbjct: 191 IGLELGSVWARLGAEVTVLEAMDKFLPAV-DEQVAKEAQKILTKQGLKILLGARVTGTEV 249
Query: 232 TNADGEVKEVKLKDGRTLEADIVVVGVGGRP----LISLFKGQVAENKGGIETDDFFKTS 287
            N    VK V  +  ++   D ++V VG RP    L++   G   + +G I  DD+  TS
Sbjct: 250 KNKQVTVKFVDAEGEKSQAFDKLIVAVGRRPVTTDLLAADSGVTLDERGFIYVDDYCATS 309
Query: 288 ADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLP 344
              VYA+GDV    M              A K++E+ V       G K    YD +P
Sbjct: 310 VPGVYAIGDVVRGAML-------------AHKASEEGVVVAERIAGHKAQMNYDLIP 353

>pdb|3KD9|A Chain A, Crystal Structure Of Pyridine Nucleotide Disulfide Oxidoreductase From Pyrococcus Horikoshii Length = 449

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 101/229 (44%), Gaps = 19/229 (8%)
Query: 78  PEWY-KEKGIELILSTEIVRADIASKTLLSATG-LIFKYQILVIATGSTVLRLTDFGVEG 135
           PE + K++GI+L L+ E++  D     +    G   +++  LV A G++        +EG
Sbjct: 65  PEVFIKKRGIDLHLNAEVIEVDTGYVRVRENGGEKSYEWDYLVFANGASP---QVPAIEG 121
Query: 136 ADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKINNIDVSMVYPEP 195
            + K +F      DA  + E                YIG+E++ A      +V+M+    
Sbjct: 122 VNLKGVFTADLPPDALAIREYMEKYKVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGE 181
Query: 196 WCMPRLFTADIAAFYE---GYYANKGIKIIKGTVAVGFTTNADGEVK-EVKLKDGRTLEA 251
             + R F  ++    E     + N  ++ I        T   +GE + E  + D    +A
Sbjct: 182 RVLRRSFDKEVTDILEEKLKKHVNLRLQEI--------TMKIEGEERVEKVVTDAGEYKA 233
Query: 252 DIVVVGVGGRPLISLFK--GQVAENKGGIETDDFFKTSADDVYAVGDVA 298
           ++V++  G +P I L K  G      G I T++  +TS ++VYA GDVA
Sbjct: 234 ELVILATGIKPNIELAKQLGVRIGETGAIWTNEKMQTSVENVYAAGDVA 282

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	433
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	1e-108
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	2e-92
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	3e-92
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	2e-91
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	2e-90
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	3e-90
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	2e-60
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	8e-60
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	3e-54
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	4e-54
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	2e-52
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	3e-52
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	4e-50
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	4e-50
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	3e-49
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	2e-48
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	2e-48
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	6e-47
1yqz_A	438	Coenzyme A disulfide reductase; oxidoreductase; HE	4e-46
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	3e-23
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	6e-23
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	4e-22
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	2e-21
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	2e-21
1fec_A	490	Trypanothione reductase; redox-active center, oxid	2e-21
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	5e-21
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	2e-20
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	2e-20
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	2e-19
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	3e-19
4dna_A	463	Probable glutathione reductase; structural genomic	3e-19
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	2e-18
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	3e-18
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	7e-18
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	2e-17
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	2e-17
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	3e-17
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	3e-05
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	7e-17
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	7e-17
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	9e-17
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	1e-16
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	2e-16
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	4e-16
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	5e-16
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	5e-16
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	6e-16
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	1e-15
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	3e-15
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	6e-15
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	9e-15
1ojt_A	482	Surface protein; redox-active center, glycolysis,	1e-14
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	1e-13
4fk1_A	304	Putative thioredoxin reductase; structural genomic	2e-13
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	7e-13
1fcd_A	401	Flavocytochrome C sulfide dehydrogenase (flavin- b	7e-10
1fcd_A	401	Flavocytochrome C sulfide dehydrogenase (flavin- b	4e-04
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	2e-09
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	2e-09
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	3e-09
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	3e-09
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	1e-08
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	2e-08
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	2e-07
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	3e-07
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	3e-07
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	1e-06
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	2e-06
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	2e-06
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	2e-05
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	9e-05
3r9u_A	315	Thioredoxin reductase; structural genomics, center	6e-04
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	8e-04

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* Length = 493

 Score =  328 bits (843), Expect = e-108
 Identities = 101/451 (22%), Positives = 176/451 (39%), Gaps = 35/451 (7%)

Query: 2   AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTA 60
           A     ++++GGG +A  AAR    +      + I+S++   PY RP LSK   F +   
Sbjct: 8   APSHVPFLLIGGGTAAFAAARSIRARD-PGARVLIVSEDPELPYMRPPLSKELWFSDDPN 66

Query: 61  RLPGFHVCVGSGGERLL----PEWY---------KEKGIELILSTEIVRADIASKTLLSA 107
                     +G ER +    P +Y         +  G+ ++   ++V+ D+    +   
Sbjct: 67  VTKTLRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLN 126

Query: 108 TGLIFKYQILVIATGSTVLRLTDFGVEGADAK-NIFYLREIDDADKLVEAIKAKKNGKAV 166
            G    Y+  +IATG T   L+     GA+ K      R+I D   L +  +  K     
Sbjct: 127 DGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRSLEKISREVK--SIT 184

Query: 167 VVGGGYIGLELSAALKIN----NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKII 222
           ++GGG++G EL+ AL         +V  ++PE   M ++    ++ +       +G+K++
Sbjct: 185 IIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVM 244

Query: 223 KGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG---QVAENKGGIE 279
              +              +KLKDGR +E D +V  VG  P + L K    ++  + GG  
Sbjct: 245 PNAIVQSVG--VSSGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFR 302

Query: 280 TDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTG 339
            +   +    +++  GD A F        RRVEH DHA  S   A + +     G     
Sbjct: 303 VNAELQAR-SNIWVAGDAACFYDIKLGR-RRVEHHDHAVVSGRLAGENMT----GAAKP- 355

Query: 340 YDYLPYFYSRAF-DLSWQFYGDNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESG 398
           Y +   F+S    D+ ++  G         G    A+A     +   + G  +    E+ 
Sbjct: 356 YWHQSMFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQSGTGIRSESETE 415

Query: 399 TPEENKAIAKVARVQPSVESLDVLKNEGLSF 429
           +      I       P          +G+ F
Sbjct: 416 SEASEITIPPSTPAVPQAPVQGEDYGKGVIF 446

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* Length = 431

 Score =  284 bits (730), Expect = 2e-92
 Identities = 104/393 (26%), Positives = 176/393 (44%), Gaps = 32/393 (8%)

Query: 8   YVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFH 66
            VI+G G++    A      G + G + ++    V P+  P LSKAYL  + TA      
Sbjct: 7   VVIVGTGLAGVEVAFGLRASGWE-GNIRLVGDATVIPHHLPPLSKAYLAGKATA------ 59

Query: 67  VCVGSGGERLL---PEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGS 123
                  E L    P+ Y  + I+L+  T++   +   + ++ + G    Y  LV+ATG 
Sbjct: 60  -------ESLYLRTPDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGG 112

Query: 124 TVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKI 183
               L         A N  YLR ++DA+ +   + A      VV+GGGYIGLE++A    
Sbjct: 113 RPRPLPVASGAVGKANNFRYLRTLEDAECIRRQLIADNR--LVVIGGGYIGLEVAATAIK 170

Query: 184 NNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNA-DGEVKEVK 242
            N+ V+++      + R+    ++AFYE  +   G+ I  GT   GF  +    +V  V 
Sbjct: 171 ANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVL 230

Query: 243 LKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPM 302
            +DG  L AD+V+ G+G  P   L      +   GI  ++  +TS   + AVGD A F  
Sbjct: 231 CEDGTRLPADLVIAGIGLIPNCELASAAGLQVDNGIVINEHMQTSDPLIMAVGDCARFHS 290

Query: 303 KLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV 362
           +LY    R+E V +A + A +    +            +  P+F+S  +++  +  G + 
Sbjct: 291 QLYDRWVRIESVPNALEQARKIAAILCGKV-----PRDEAAPWFWSDQYEIGLKMVGLSE 345

Query: 363 GD--TVLFGDNDLASATHKFGTYWIKDGKVVGV 393
           G    ++ G      A   F  ++++  +V+ V
Sbjct: 346 GYDRIIVRGS----LAQPDFSVFYLQGDRVLAV 374

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* Length = 408

 Score =  283 bits (726), Expect = 3e-92
 Identities = 99/387 (25%), Positives = 170/387 (43%), Gaps = 34/387 (8%)

Query: 9   VILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHV 67
           V+LG G+++     E  + G + G + ++  E   PY+RP LSK ++             
Sbjct: 11  VVLGAGLASVSFVAELRQAGYQ-GLITVVGDEAERPYDRPPLSKDFM------------- 56

Query: 68  CVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLR 127
                 E++  +  +   +E +L       D  + T+  + G    Y  LV+ATG+    
Sbjct: 57  -AHGDAEKIRLDCKRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRA 115

Query: 128 LTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNID 187
           L            +  LR ++DA ++   ++ +   + ++VGGG IGLEL+A  +   + 
Sbjct: 116 LP---TLQGATMPVHTLRTLEDARRIQAGLRPQS--RLLIVGGGVIGLELAATARTAGVH 170

Query: 188 VSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGR 247
           VS+V  +P  M R   A +A F   Y+A +G+ +       G           V L DG 
Sbjct: 171 VSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSVDGV------VLLDDGT 224

Query: 248 TLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYRE 307
            + AD+VVVG+G     +L +        GI  D + +T+  DVYA+GDV      L   
Sbjct: 225 RIAADMVVVGIGVLANDALARAAGLACDDGIFVDAYGRTTCPDVYALGDVTRQRNPLSGR 284

Query: 308 MRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG-DTV 366
             R+E   +A+       + ++      T  GY  LP+++S    L  Q  G   G + +
Sbjct: 285 FERIETWSNAQNQGIAVARHLV----DPTAPGYAELPWYWSDQGALRIQVAGLASGDEEI 340

Query: 367 LFGDNDLASATHKFGTYWIKDGKVVGV 393
           + G+  L +   KF    ++ G++VG 
Sbjct: 341 VRGEVSLDA--PKFTLIELQKGRIVGA 365

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} Length = 410

 Score =  281 bits (721), Expect = 2e-91
 Identities = 92/390 (23%), Positives = 165/390 (42%), Gaps = 36/390 (9%)

Query: 9   VILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHV 67
            I+G GV     A+    +G + G +++I  E   PY+RP+LSKA L             
Sbjct: 6   AIIGNGVGGFTTAQALRAEGFE-GRISLIGDEPHLPYDRPSLSKAVLDGSLER------- 57

Query: 68  CVGSGGERLL--PEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTV 125
                   +L   +WY E  I+++   E+   D+ ++T+    G       +VIATGS  
Sbjct: 58  ------PPILAEADWYGEARIDMLTGPEVTALDVQTRTISLDDGTTLSADAIVIATGSRA 111

Query: 126 LRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINN 185
             +    + G+    +  LR   D   L ++  +    + ++VGGG IG E++   +   
Sbjct: 112 RTMA---LPGSQLPGVVTLRTYGDVQVLRDSWTSAT--RLLIVGGGLIGCEVATTARKLG 166

Query: 186 IDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD 245
           + V+++      + R+    I A+  G     G+++  GT  VGF+   +G++++V   D
Sbjct: 167 LSVTILEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFS--GEGQLEQVMASD 224

Query: 246 GRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLY 305
           GR+  AD  ++ VG  P   L +        G+  D    T A  V+AVGDVA++P++  
Sbjct: 225 GRSFVADSALICVGAEPADQLARQAGLACDRGVIVDHCGATLAKGVFAVGDVASWPLRAG 284

Query: 306 REMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGD- 364
                +E   +A++ A      I+             LP  ++       Q  GD  G  
Sbjct: 285 GRR-SLETYMNAQRQAAAVAAAILGKN-----VSAPQLPVSWTEIAGHRMQMAGDIEGPG 338

Query: 365 -TVLFGDNDLASATHKFGTYWIKDGKVVGV 393
             V  G       +     + +++ ++  V
Sbjct: 339 DFVSRGM----PGSGAALLFRLQERRIQAV 364

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} Length = 415

 Score =  279 bits (715), Expect = 2e-90
 Identities = 123/400 (30%), Positives = 191/400 (47%), Gaps = 35/400 (8%)

Query: 1   MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGT 59
           +  +    VI+G G     AA    + G + G + +I +E   PYERP LSK YL  E T
Sbjct: 5   VQAERADVVIVGAGHGGAQAAIALRQNGFE-GRVLVIGREPEIPYERPPLSKEYLAREKT 63

Query: 60  ARLPGFHVCVGSGGERLL---PEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQI 116
                         ER+     +++++K +E+ L  E+V  D A+ T+    G   +Y  
Sbjct: 64  F-------------ERICIRPAQFWEDKAVEMKLGAEVVSLDPAAHTVKLGDGSAIEYGK 110

Query: 117 LVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLE 176
           L+ ATG    RL+     GAD   +  +R  +DAD+L+  + A     AVV+GGGYIGLE
Sbjct: 111 LIWATGGDPRRLS---CVGADLAGVHAVRTKEDADRLMAELDAGAK-NAVVIGGGYIGLE 166

Query: 177 LSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG 236
            +A L    ++V+++   P  + R+    ++ FY+  +   G+ +  G        +   
Sbjct: 167 AAAVLTKFGVNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEGD-GT 225

Query: 237 EVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGD 296
           +V  V+++DG  + ADIV+VG+G  P +       A    G++ D+F +TS  DVYA+GD
Sbjct: 226 KVTGVRMQDGSVIPADIVIVGIGIVPCVGALISAGASGGNGVDVDEFCRTSLTDVYAIGD 285

Query: 297 VATFPMKLYR-EMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSW 355
            A          + R+E V +A   A  A K I           Y   P+F+S  +DL  
Sbjct: 286 CAAHANDFADGAVIRLESVQNANDMATAAAKDICGAP-----VPYKATPWFWSNQYDLKL 340

Query: 356 QFYGDNVG--DTVLFGDNDLASATHKFGTYWIKDGKVVGV 393
           Q  G + G  + VL GD     AT  F   ++K GKVV +
Sbjct: 341 QTVGLSTGHDNAVLRGD----PATRSFSVVYLKGGKVVAL 376

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} Length = 404

 Score =  278 bits (713), Expect = 3e-90
 Identities = 115/391 (29%), Positives = 177/391 (45%), Gaps = 36/391 (9%)

Query: 9   VILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHV 67
           +I G G +    A    +     G +A+I+ E   PY+RP LSKAYL   G         
Sbjct: 5   LIAGAGHAGFQVAVSLRQAKYP-GRIALINDEKHLPYQRPPLSKAYLKSGGDP------- 56

Query: 68  CVGSGGERLL---PEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST 124
                   L+    ++++++ IEL +S  +V  D   + LL A+G   +Y  LV+ATG+ 
Sbjct: 57  ------NSLMFRPEKFFQDQAIEL-ISDRMVSIDREGRKLLLASGTAIEYGHLVLATGAR 109

Query: 125 VLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKIN 184
              L    V  A   ++ YLR +D+++ L + +  KK+   VV+G G+IGLE +A  +  
Sbjct: 110 NRMLD---VPNASLPDVLYLRTLDESEVLRQRMPDKKH--VVVIGAGFIGLEFAATARAK 164

Query: 185 NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK 244
            ++V +V   P  M R+ T +I++++   ++  GI++  G  A          V  V L 
Sbjct: 165 GLEVDVVELAPRVMARVVTPEISSYFHDRHSGAGIRMHYGVRATEIAA-EGDRVTGVVLS 223

Query: 245 DGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKL 304
           DG TL  D+VVVGVG  P + +          GI  D    TS   + A+GD A F    
Sbjct: 224 DGNTLPCDLVVVGVGVIPNVEIAAAAGLPTAAGIIVDQQLLTSDPHISAIGDCALFESVR 283

Query: 305 YREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG- 363
           + E  RVE V +A   A      +           YD  P+F+S   D   Q  G   G 
Sbjct: 284 FGETMRVESVQNATDQARCVAARLTGDA-----KPYDGYPWFWSDQGDDKLQIVGLTAGF 338

Query: 364 -DTVLFGDNDLASATHKFGTYWIKDGKVVGV 393
              V+ G      A   F  +  K GK++G+
Sbjct: 339 DQVVIRGS----VAERSFSAFCYKAGKLIGI 365

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* Length = 384

 Score =  200 bits (511), Expect = 2e-60
 Identities = 78/353 (22%), Positives = 134/353 (37%), Gaps = 48/353 (13%)

Query: 1   MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYL---FP 56
           M+E++   VI+G G++    ARE+ K       L +I+ +    Y +P LS  +      
Sbjct: 1   MSERA-PLVIIGTGLAGYNLAREWRKLD-GETPLLMITADDGRSYSKPMLSTGFSKNKDA 58

Query: 57  EGTARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQI 116
           +G A                     ++    ++  T +   D   + +      + +Y+ 
Sbjct: 59  DGLAMAEP-------------GAMAEQLNARILTHTRVTGIDPGHQRIWIGEEEV-RYRD 104

Query: 117 LVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLE 176
           LV+A G+  +R+    VEG     ++ + +++D  +  +A   K+  + +++G G IG E
Sbjct: 105 LVLAWGAEPIRVP---VEGDAQDALYPINDLEDYARFRQAAAGKR--RVLLLGAGLIGCE 159

Query: 177 LSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG 236
            +  L      + +V P    MP L     A   +      G++   G V         G
Sbjct: 160 FANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLK--KAG 217

Query: 237 EVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKG-----GIETDDFFKTSADDV 291
           E  E  L DG  +  D+VV  VG RP   L     A   G     GI  D   +TS  ++
Sbjct: 218 EGLEAHLSDGEVIPCDLVVSAVGLRPRTEL-----AFAAGLAVNRGIVVDRSLRTSHANI 272

Query: 292 YAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLP 344
           YA+GD A              +V      A    +T+         +   Y P
Sbjct: 273 YALGDCAEVDGLNL------LYVMPLMACARALAQTLAGNP-----SQVAYGP 314

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} Length = 385

 Score =  198 bits (507), Expect = 8e-60
 Identities = 96/400 (24%), Positives = 164/400 (41%), Gaps = 59/400 (14%)

Query: 2   AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTA 60
             KS K +ILG G +   AA+    +     ++ +I+ E   PY RP L++  +    + 
Sbjct: 6   HHKSTKILILGAGPAGFSAAKAALGKC---DDITMINSEKYLPYYRPRLNE-IIAKNKSI 61

Query: 61  RLPGFHVCVGSGGERLL---PEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQIL 117
                        + +L    +WY++  I++I S      D  +K +   +G   KY+ L
Sbjct: 62  -------------DDILIKKNDWYEKNNIKVITSEFATSIDPNNKLVTLKSGEKIKYEKL 108

Query: 118 VIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLEL 177
           +IA+GS   ++    V  AD   IF L   DDA K+ +    K  GKA ++GGG +G+EL
Sbjct: 109 IIASGSIANKIK---VPHAD--EIFSLYSYDDALKIKDE--CKNKGKAFIIGGGILGIEL 161

Query: 178 SAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGE 237
           + A+  +    S+     + + R    D   F +      GIKI   +            
Sbjct: 162 AQAIIDSGTPASIGIILEYPLERQLDRDGGLFLKDKLDRLGIKIYTNS-----------N 210

Query: 238 VKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDV 297
            +E+    G  + +  V+  VG +P +   K     +K GI  +D  +TS  D+YA GDV
Sbjct: 211 FEEM----GDLIRSSCVITAVGVKPNLDFIKDTEIASKRGILVNDHMETSIKDIYACGDV 266

Query: 298 ATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQF 357
           A F  K          ++ A K  E A         G+  +  + +P    +   +S   
Sbjct: 267 AEFYGKNPG------LINIANKQGEVAGLNAC----GEDASYSEIIPSPILKVSGISIIS 316

Query: 358 YGDNVG--DTVLFGDNDLASATHKFGTYWIKDGKVVGVFL 395
            GD      + +F      +   K+    +K+ K+    +
Sbjct: 317 CGDIENNKPSKVFRS----TQEDKYIVCMLKENKIDAAAV 352

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} Length = 452

 Score =  186 bits (474), Expect = 3e-54
 Identities = 41/226 (18%), Positives = 91/226 (40%), Gaps = 12/226 (5%)

Query: 78  PEWYKEKGIELILSTEIVRADIASKTLL---SATGLIFKYQILVIATGSTVLRLTDFGVE 134
            E  + + I+L+L+ E+V  D+ ++ +          + Y  L++ATG++        + 
Sbjct: 65  EEELRRQKIQLLLNREVVAMDVENQLIAWTRKEEQQWYSYDKLILATGASQFST---QIR 121

Query: 135 GADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE 194
           G+  + +   + +  A   V  ++  +     V+G G IG+E    L      V +    
Sbjct: 122 GSQTEKLLKYKFLSGALAAVPLLENSQ--TVAVIGAGPIGMEAIDFLVKMKKTVHVFESL 179

Query: 195 PWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIV 254
              +P+ F  ++ A  +     + +        +G    A+G    V     + +  D  
Sbjct: 180 ENLLPKYFDKEMVAEVQKSLEKQAVIFHFEETVLGIEETANG---IVLETSEQEISCDSG 236

Query: 255 VVGVGGRPLISLFKGQVAEN-KGGIETDDFFKTSADDVYAVGDVAT 299
           +  +   P ++    ++  N    I  D + +TS  +V+A+GD  +
Sbjct: 237 IFALNLHPQLAYLDKKIQRNLDQTIAVDAYLQTSVPNVFAIGDCIS 282

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* Length = 447

 Score =  185 bits (472), Expect = 4e-54
 Identities = 60/228 (26%), Positives = 97/228 (42%), Gaps = 12/228 (5%)

Query: 78  PEWYKEKGIELILSTEIVRADIASKTLL---SATGLIFK--YQILVIATGSTVLRLTDFG 132
            E  + +G+ +  +TEI         +      +G      Y  L+I+ G+    L    
Sbjct: 63  GEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFEL---D 119

Query: 133 VEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVY 192
           + G D  NI+ +R    A KL +     +    VV+G GYIG+E + A       V+++ 
Sbjct: 120 IPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVID 179

Query: 193 PEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEAD 252
                +      +             I I  G     +    DG V++V + D    +AD
Sbjct: 180 ILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYE--GDGRVQKV-VTDKNAYDAD 236

Query: 253 IVVVGVGGRPLISLFKGQVAEN-KGGIETDDFFKTSADDVYAVGDVAT 299
           +VVV VG RP  +  KG +  +  G I+TD++ +TS  DV+AVGD   
Sbjct: 237 LVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATL 284

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} Length = 452

 Score =  181 bits (462), Expect = 2e-52
 Identities = 59/228 (25%), Positives = 101/228 (44%), Gaps = 13/228 (5%)

Query: 78  PEWYKEKGIELILSTEIVRADIASKTLL---SATGLIFK--YQILVIATGSTVLRLTDFG 132
           PE     G  + +  ++   D  +KT+      T       Y  L++ TGS         
Sbjct: 65  PEELSNLGANVQMRHQVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPTVPP--- 121

Query: 133 VEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVY 192
           + G D+  ++  +  +DA KL E     K     ++G GYIG EL+ A    N +V+++ 
Sbjct: 122 IPGIDSSRVYLCKNYNDAKKLFEEAPKAK--TITIIGSGYIGAELAEAYSNQNYNVNLID 179

Query: 193 PEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEAD 252
                + + F  +        Y   G+ ++ G+    F    D E+      DG+ +++D
Sbjct: 180 GHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFEEV-DDEIITK-TLDGKEIKSD 237

Query: 253 IVVVGVGGRPLISLFKGQVAEN-KGGIETDDFFKTSADDVYAVGDVAT 299
           I ++ +G RP   L KG+VA    G I TD++  +S  D++A GD A 
Sbjct: 238 IAILCIGFRPNTELLKGKVAMLDNGAIITDEYMHSSNRDIFAAGDSAA 285

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 367

 Score =  178 bits (454), Expect = 3e-52
 Identities = 77/303 (25%), Positives = 135/303 (44%), Gaps = 39/303 (12%)

Query: 7   KYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGF 65
           K VI+G G      A++ ++      E+ +I KE V  Y +P LS  Y+           
Sbjct: 10  KVVIVGNGPGGFELAKQLSQTY----EVTVIDKEPVPYYSKPMLSH-YIAGFIPR----- 59

Query: 66  HVCVGSGGERLL---PEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATG 122
                    RL     +WY+++GIE+ L+ E    D   K +++  G +  Y  LV+ATG
Sbjct: 60  --------NRLFPYSLDWYRKRGIEIRLAEEAKLIDRGRKVVITEKGEV-PYDTLVLATG 110

Query: 123 STVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALK 182
           +         ++G +   +  LR I DAD++ E+I+     +A+++GGG+IGLEL+  L 
Sbjct: 111 ARAREPQ---IKGKE--YLLTLRTIFDADRIKESIENSG--EAIIIGGGFIGLELAGNLA 163

Query: 183 INNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVK 242
                V +++     +      +++   +      G+K    +  +          +E  
Sbjct: 164 EAGYHVKLIHRGAMFLG--LDEELSNMIKDMLEETGVKFFLNSELLEAN-------EEGV 214

Query: 243 LKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPM 302
           L +   +E  + +  +G  P + L +        GI  DD F+TSA DVYA+GD A +  
Sbjct: 215 LTNSGFIEGKVKICAIGIVPNVDLARRSGIHTGRGILIDDNFRTSAKDVYAIGDCAEYSG 274

Query: 303 KLY 305
            + 
Sbjct: 275 IIA 277

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A* Length = 490

 Score =  175 bits (447), Expect = 4e-50
 Identities = 53/234 (22%), Positives = 103/234 (44%), Gaps = 15/234 (6%)

Query: 78  PEWYKEKGIELILSTEIVRADIASKTLL-SATGLIFK--YQILVIATGSTVLRLTDFGVE 134
            E  +  G ++ + + +   D  +KT+     G      Y  L+ ATGS  +     G E
Sbjct: 99  KEELESLGAKVYMESPVQSIDYDAKTVTALVDGKNHVETYDKLIFATGSQPILPPIKGAE 158

Query: 135 GA--------DAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNI 186
                       +N+ +++   ++  ++  ++ K   +  VVG GYIG+EL+ A +    
Sbjct: 159 IKEGSLEFEATLENLQFVKLYQNSADVIAKLENKDIKRVAVVGAGYIGVELAEAFQRKGK 218

Query: 187 DVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG 246
           +V ++     C+   +  D+           GI++  G          +G+V+++ + D 
Sbjct: 219 EVVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQLAFGETVKEVA--GNGKVEKI-ITDK 275

Query: 247 RTLEADIVVVGVGGRPLISLFKGQVAENK-GGIETDDFFKTSADDVYAVGDVAT 299
              + D+V++ VG RP  +L  G++   + G    +   +TS   VYA+GD AT
Sbjct: 276 NEYDVDMVILAVGFRPNTTLGNGKIDLFRNGAFLVNKRQETSIPGVYAIGDCAT 329

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} Length = 472

 Score =  175 bits (446), Expect = 4e-50
 Identities = 68/231 (29%), Positives = 109/231 (47%), Gaps = 14/231 (6%)

Query: 78  PEWYKEK-GIELILSTEIVRADIASKTLL---SATGLIFK--YQILVIATGSTVLRLTDF 131
           PE+++    +E ++ T     D A+ T+      TG      Y  LV+A GS   R    
Sbjct: 72  PEFFRINKDVEALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSKANRP--- 128

Query: 132 GVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAAL-KINNIDVSM 190
            VEG D   +  +  +D+A+ +  AI A +  KAV+VGGG+IGLE++ +L  +  ID ++
Sbjct: 129 PVEGMDLAGVTPVTNLDEAEFVQHAISAGEVSKAVIVGGGFIGLEMAVSLADMWGIDTTV 188

Query: 191 VYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLE 250
           V      MP   +  ++           + +  G   V      +G+V  V + D RTL+
Sbjct: 189 VELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLEGE-NGKVARV-ITDKRTLD 246

Query: 251 ADIVVVGVGGRPLISLFKGQVAE--NKGGIETDDFFKTSADDVYAVGDVAT 299
           AD+V++  G  P   L +    E   +G I  D   +TS  D++A GD  T
Sbjct: 247 ADLVILAAGVSPNTQLARDAGLELDPRGAIIVDTRMRTSDPDIFAGGDCVT 297

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} Length = 449

 Score =  172 bits (439), Expect = 3e-49
 Identities = 59/227 (25%), Positives = 104/227 (45%), Gaps = 13/227 (5%)

Query: 78  PEWYKEK-GIELILSTEIVRADIASKTLLSATGLIFK--YQILVIATGSTVLRLTDFGVE 134
           PE + +K GI+L L+ E++  D     +    G      +  LV A G++        +E
Sbjct: 65  PEVFIKKRGIDLHLNAEVIEVDTGYVRVR-ENGGEKSYEWDYLVFANGASPQVP---AIE 120

Query: 135 GADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE 194
           G + K +F      DA  + E ++  K    V++GGGYIG+E++ A      +V+M+   
Sbjct: 121 GVNLKGVFTADLPPDALAIREYMEKYKVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRG 180

Query: 195 PWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIV 254
              + R F  ++    E     K + +    + +      +  V++V   D    +A++V
Sbjct: 181 ERVLRRSFDKEVTDILEEKL-KKHVNLRLQEITMKIE--GEERVEKVVT-DAGEYKAELV 236

Query: 255 VVGVGGRPLISLFKGQVAE--NKGGIETDDFFKTSADDVYAVGDVAT 299
           ++  G +P I L K         G I T++  +TS ++VYA GDVA 
Sbjct: 237 ILATGIKPNIELAKQLGVRIGETGAIWTNEKMQTSVENVYAAGDVAE 283

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* Length = 480

 Score =  171 bits (435), Expect = 2e-48
 Identities = 61/230 (26%), Positives = 109/230 (47%), Gaps = 15/230 (6%)

Query: 78  PEWYKEK-GIELILSTEIVRADIASKTLL---SATGLIFK--YQILVIATGSTVLRLTDF 131
            + +++K GI+  +  E+ + D   K +    + T  +F+  Y  L+IATG   +     
Sbjct: 99  VKTFRDKYGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPVMP--- 155

Query: 132 GVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMV 191
             EG D + +  L+ I DA+++++ ++  K     ++GGG IGLE++         V M+
Sbjct: 156 EWEGRDLQGVHLLKTIPDAERILKTLETNKVEDVTIIGGGAIGLEMAETFVELGKKVRMI 215

Query: 192 YPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEA 251
                    ++  D+A +         I+I+       F    +  V+ V+  D  T +A
Sbjct: 216 ERNDHIGT-IYDGDMAEYIYKEADKHHIEILTNENVKAFK--GNERVEAVET-DKGTYKA 271

Query: 252 DIVVVGVGGRPLISLFKGQVAE--NKGGIETDDFFKTSADDVYAVGDVAT 299
           D+V+V VG +P     +G      +KG IE + + +T+  DVYA GD AT
Sbjct: 272 DLVLVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYMQTNVQDVYAAGDCAT 321

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* Length = 588

 Score =  173 bits (440), Expect = 2e-48
 Identities = 58/230 (25%), Positives = 116/230 (50%), Gaps = 15/230 (6%)

Query: 78  PEWYKEK-GIELILSTEIVRADIASKTLL---SATGLIFK--YQILVIATGSTVLRLTDF 131
            E   ++  +++ + +E+V+ +   KT+      T   +   Y +L+++ G+  +  +  
Sbjct: 99  VERMSKRFNLDIRVLSEVVKINKEEKTITIKNVTTNETYNEAYDVLILSPGAKPIVPSIP 158

Query: 132 GVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMV 191
           G+E  +AK +F LR + D D++   I  KK   A V+GGG+IG+E+   L+   I+V++V
Sbjct: 159 GIE--EAKALFTLRNVPDTDRIKAYIDEKKPRHATVIGGGFIGVEMVENLRERGIEVTLV 216

Query: 192 YPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEA 251
                 MP     ++AA+   +  N  ++++            +     V+LK G  ++ 
Sbjct: 217 EMANQVMPP-IDYEMAAYVHEHMKNHDVELVFEDGVDAL----EENGAVVRLKSGSVIQT 271

Query: 252 DIVVVGVGGRPLISLFKGQVAE--NKGGIETDDFFKTSADDVYAVGDVAT 299
           D++++ +G +P  SL KG       +G I+ ++ F+TS   +YA+GD   
Sbjct: 272 DMLILAIGVQPESSLAKGAGLALGVRGTIKVNEKFQTSDPHIYAIGDAIE 321

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* Length = 565

 Score =  168 bits (429), Expect = 6e-47
 Identities = 59/247 (23%), Positives = 105/247 (42%), Gaps = 29/247 (11%)

Query: 78  PEWYKEK-GIELILSTEIVRADIASKTLL---SATGLIFK--YQILVIATGSTVLRLTDF 131
           PE +K +  +E+ +  E+V  D A+K +       G  ++  Y  L+++ G+  +     
Sbjct: 64  PESFKARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIVP--- 120

Query: 132 GVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMV 191
            + G D      LR I D D++++ I+      A VVGGG+IGLE+  +L    I  +++
Sbjct: 121 PIPGVDNPLTHSLRNIPDMDRILQTIQMNNVEHATVVGGGFIGLEMMESLHHLGIKTTLL 180

Query: 192 YPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVK------------ 239
                 M      ++A F      ++G+ +  GT     +      V             
Sbjct: 181 ELADQVMTP-VDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQH 239

Query: 240 -----EVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAE--NKGGIETDDFFKTSADDVY 292
                 + L +G  LE D++++ +G RP   L +         GGI+ +   +TS   +Y
Sbjct: 240 IKGHLSLTLSNGELLETDLLIMAIGVRPETQLARDAGLAIGELGGIKVNAMMQTSDPAIY 299

Query: 293 AVGDVAT 299
           AVGD   
Sbjct: 300 AVGDAVE 306

>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A {Staphylococcus aureus} Length = 438

 Score =  164 bits (417), Expect = 4e-46
 Identities = 52/230 (22%), Positives = 98/230 (42%), Gaps = 21/230 (9%)

Query: 78  PEWYKEK-GIELILSTEIVRADIASKTLL---SATGLIFK--YQILVIATGSTVLRLTDF 131
           PE + ++  I +    E++  +   +T+      T   F+  Y  L+++ G++       
Sbjct: 64  PEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASAN----- 118

Query: 132 GVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMV 191
              G ++   F LR ++D D + + IKA +  K +VVG GY+ LE+   L    +  +++
Sbjct: 119 -SLGFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLI 177

Query: 192 YPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEA 251
           +        L  AD+          + I                    E+  K G+    
Sbjct: 178 HRSDKINK-LMDADMNQPILDELDKREIPYRLNEEINAI------NGNEITFKSGKVEHY 230

Query: 252 DIVVVGVGGRPLISLFKGQVAE--NKGGIETDDFFKTSADDVYAVGDVAT 299
           D+++ GVG  P     +    +   KG I  +D F+T+  ++YA+GD+AT
Sbjct: 231 DMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIAT 280

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* Length = 409

 Score = 99.0 bits (247), Expect = 6e-23
 Identities = 66/378 (17%), Positives = 121/378 (32%), Gaps = 85/378 (22%)

Query: 9   VILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVC 68
           ++LGG   A  AA    +      ++ +I+K    Y RP        P            
Sbjct: 5   LVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRP------ALPH----------- 47

Query: 69  VGSGGERL------LPEWYKEKGIELILSTEIVRADIASKTLL----SATGLIFKYQILV 118
           V  G   +      L E   EKGI+      + + D  S  +       +    +Y  ++
Sbjct: 48  VAIGVRDVDELKVDLSEALPEKGIQFQEG-TVEKIDAKSSMVYYTKPDGSMAEEEYDYVI 106

Query: 119 IATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELS 178
           +  G+    L    V+G   K  + + E + A KL E +++ + G   +  G +      
Sbjct: 107 VGIGA---HLATELVKGW-DKYGYSVCEPEFATKLREKLESFQGGNIAIGSGPFYQGHNP 162

Query: 179 ------------------AALKI--------------NNIDVSMVYPEPWCMPRLFTADI 206
                                ++              + + V++  P  +      + + 
Sbjct: 163 KPKVPENFVPNADSACEGPVFEMSLMLHGYFKKKGMLDKVHVTVFSPGEYLSD--LSPNS 220

Query: 207 AAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEAD--IVVVGVGGRPLI 264
                  Y   GIK++          +      E+  + G T+ AD  I++    G P +
Sbjct: 221 RKAVASIYNQLGIKLVHNFKIKEIREH------EIVDEKGNTIPADITILLPPYTGNPAL 274

Query: 265 SLFKGQVAENKGGIETDDFFK-TSADDVYAVGDVATFPM-KLYREMRRVEHVDHARKSAE 322
                 + ++ G I TD        D+VYAVGD  +  + KL            A  +  
Sbjct: 275 KNSTPDLVDDGGFIPTDLNMVSIKYDNVYAVGDANSMTVPKL---------GYLAVMTGR 325

Query: 323 QAVKTIMATEGGKTVTGY 340
            A + +    G  T    
Sbjct: 326 IAAQHLANRLGVPTKVDK 343

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 Length = 499

 Score = 97.3 bits (243), Expect = 4e-22
 Identities = 47/192 (24%), Positives = 76/192 (39%), Gaps = 24/192 (12%)

Query: 118 VIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLEL 177
           ++ATG++   L        D + I   R++ D D L + +        +VVG G  G E 
Sbjct: 149 LVATGASPRILPSAQP---DGERILTWRQLYDLDALPDHL--------IVVGSGVTGAEF 197

Query: 178 SAALKINNIDVSMVYPEPWCMPRL---FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNA 234
             A     + V++V         +     AD A   E  +A +G+++ K   A   T   
Sbjct: 198 VDAYTELGVPVTVV--A--SQDHVLPYEDADAALVLEESFAERGVRLFKNARAASVTRTG 253

Query: 235 DGEVKEVKLKDGRTLEADIVVVGVGGRPLIS---LFKGQVA-ENKGGIETDDFFKTSADD 290
            G V  V + DGRT+E    ++ +G  P  S   L +  +       +  D   +T A  
Sbjct: 254 AG-VL-VTMTDGRTVEGSHALMTIGSVPNTSGLGLERVGIQLGRGNYLTVDRVSRTLATG 311

Query: 291 VYAVGDVATFPM 302
           +YA GD      
Sbjct: 312 IYAAGDCTGLLP 323

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 500

 Score = 95.4 bits (238), Expect = 2e-21
 Identities = 48/222 (21%), Positives = 78/222 (35%), Gaps = 22/222 (9%)

Query: 118 VIATGSTVLRLTDFGVE-GADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLE 176
           +IA G+  +     G+E    +   F +               K++ K  +VG GYI +E
Sbjct: 146 LIAVGNKPVFPPVKGIENTISSDEFFNI---------------KESKKIGIVGSGYIAVE 190

Query: 177 LSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG 236
           L   +K   ID  +       + + F   +    E       I I+     V     +D 
Sbjct: 191 LINVIKRLGIDSYIFARGNRILRK-FDESVINVLENDMKKNNINIVTFADVVEIKKVSDK 249

Query: 237 EVKEVKLKDGRTLE-ADIVVVGVGGRPLIS---LFKGQVAENKGGIETDDFFKTSADDVY 292
            +  + L DGR  E  D V+  VG  P      L K  V  N   I  D+  +TS +++Y
Sbjct: 250 NLS-IHLSDGRIYEHFDHVIYCVGRSPDTENLKLEKLNVETNNNYIVVDENQRTSVNNIY 308

Query: 293 AVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGG 334
           AVGD          E   +  + +  +   +           
Sbjct: 309 AVGDCCMVKKSKEIEDLNLLKLYNEERYLNKKENVTEDIFYN 350

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* Length = 495

 Score = 95.3 bits (238), Expect = 2e-21
 Identities = 40/142 (28%), Positives = 68/142 (47%), Gaps = 9/142 (6%)

Query: 163 GKAVVVGGGYIGLELS---AALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGI 219
            + + VGGG+I +E +    A K     V++ Y     + R F   I           GI
Sbjct: 192 RRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLIL-RGFDETIREEVTKQLTANGI 250

Query: 220 KIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS---LFKGQVAEN-K 275
           +I+        + N DG  K V  + G+TL+ D+V++ +G  P  +   L    V    K
Sbjct: 251 EIMTNENPAKVSLNTDGS-KHVTFESGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPK 309

Query: 276 GGIETDDFFKTSADDVYAVGDV 297
           GG++ D+F +T+  ++YA+GD+
Sbjct: 310 GGVQVDEFSRTNVPNIYAIGDI 331

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* Length = 490

 Score = 95.3 bits (238), Expect = 2e-21
 Identities = 42/142 (29%), Positives = 65/142 (45%), Gaps = 9/142 (6%)

Query: 163 GKAVVVGGGYIGLELS---AALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGI 219
            +A+ VGGGYI +E +    A K     V + Y     + R F +++           GI
Sbjct: 188 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL-RGFDSELRKQLTEQLRANGI 246

Query: 220 KIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS---LFKGQVAENKG 276
            +         T NADG  + V  + G   + D+V++ +G  P      L K  V   K 
Sbjct: 247 NVRTHENPAKVTKNADGT-RHVVFESGAEADYDVVMLAIGRVPRSQTLQLEKAGVEVAKN 305

Query: 277 G-IETDDFFKTSADDVYAVGDV 297
           G I+ D + KT+ D++YA+GDV
Sbjct: 306 GAIKVDAYSKTNVDNIYAIGDV 327

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* Length = 450

 Score = 93.7 bits (234), Expect = 5e-21
 Identities = 49/221 (22%), Positives = 80/221 (36%), Gaps = 25/221 (11%)

Query: 82  KEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVE-GADAKN 140
            +  +++I       A       L   G       ++IATG         GVE G D+  
Sbjct: 104 GKNNVDVIKG----FARFVDAKTLEVNGETITADHILIATGGRPSHPDIPGVEYGIDSDG 159

Query: 141 IFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR 200
            F L  +                +  VVG GYIG+EL   +        +       +  
Sbjct: 160 FFALPALP--------------ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPL-P 204

Query: 201 LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 260
            F   I+         +G ++    +      N DG +  ++L+DGR+   D ++  +G 
Sbjct: 205 SFDPMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLT-LELEDGRSETVDCLIWAIGR 263

Query: 261 RPLIS---LFKGQVAENKGG-IETDDFFKTSADDVYAVGDV 297
            P      L    V  N+ G I  D +  T+ + +YAVGD 
Sbjct: 264 EPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVGDN 304

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* Length = 523

 Score = 92.8 bits (231), Expect = 2e-20
 Identities = 64/341 (18%), Positives = 114/341 (33%), Gaps = 60/341 (17%)

Query: 1   MAEKSFKYVILGGGVSAGY-AAREFAKQGVKPGELAIISKEVAPYERPAL---------- 49
              + +  + +GGG +AG   +      G +     I+ +       P L          
Sbjct: 40  DPRE-YDAIFIGGG-AAGRFGSAYLRAMGGR---QLIVDR------WPFLGGSCPHNACV 88

Query: 50  -SKAYL----FPEGTARLPGFHVCVGSGGERLLPEWYKEK---------GIELILSTEIV 95
               +              G +       + +  +   +          GI    S E +
Sbjct: 89  PHHLFSDCAAELMLARTFSGQYWFPDMTEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQL 148

Query: 96  --------RADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREI 147
                    A +     + A G +FK + L++A G+    L   GV             +
Sbjct: 149 NLEYILNCPAKVIDNHTVEAAGKVFKAKNLILAVGAGPGTLDVPGVNAKG---------V 199

Query: 148 DDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIA 207
            D   LVE +  +     VVVGG    +E             M+         +   +  
Sbjct: 200 FDHATLVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKL-IKDNETR 258

Query: 208 AFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG---RTLEADIVVVGVGGRPLI 264
           A+       +G++II G+       +A+G V+ V          +E D V +G+G +P  
Sbjct: 259 AYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRS 318

Query: 265 SLF---KGQVAENKGGIETDDFFKTSADDVYAVGDVATFPM 302
           +      G     KG +  +++ +TS  +VYAVGD+   PM
Sbjct: 319 AELAKILGLDLGPKGEVLVNEYLQTSVPNVYAVGDLIGGPM 359

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} Length = 484

 Score = 92.2 bits (230), Expect = 2e-20
 Identities = 45/186 (24%), Positives = 79/186 (42%), Gaps = 23/186 (12%)

Query: 118 VIATGSTVLRLTDF-GVE-GADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGL 175
           +IATG+ ++  +   G +    +  IF L ++                  V+VGGGYIG+
Sbjct: 159 LIATGAKIVSNSAIKGSDLCLTSNEIFDLEKLP--------------KSIVIVGGGYIGV 204

Query: 176 ELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD 235
           E +       +  ++++     + R F  D+          KGI II         +  +
Sbjct: 205 EFANIFHGLGVKTTLLHRGDLIL-RNFDYDLRQLLNDAMVAKGISIIYEATVSQVQSTEN 263

Query: 236 GEVKEVKLKDGRTLEADIVVVGVGGRPLIS---LFKGQVAENKGG-IETDDFFKTSADDV 291
                V L +G+T+ AD V++  G  P  +   L +  V  N+ G +  D+   T+   +
Sbjct: 264 C--YNVVLTNGQTICADRVMLATGRVPNTTGLGLERAGVKVNEFGAVVVDEKMTTNVSHI 321

Query: 292 YAVGDV 297
           +AVGDV
Sbjct: 322 WAVGDV 327

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} Length = 479

 Score = 89.5 bits (223), Expect = 2e-19
 Identities = 43/227 (18%), Positives = 90/227 (39%), Gaps = 30/227 (13%)

Query: 82  KEKGIELILSTEIVRADIASKTLLSATGLIFKYQIL-----VIATGSTVLRLTDF-GVE- 134
           +++ ++++       A       +         ++      ++ATG   +   +  G E 
Sbjct: 116 EKEKVDVVFG----WARFNKDGNVEVQKRDNTTEVYSANHILVATGGKAIFPENIPGFEL 171

Query: 135 GADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE 194
           G D+   F L E                 K VVVG GYIG+EL+        +  +V   
Sbjct: 172 GTDSDGFFRLEEQP--------------KKVVVVGAGYIGIELAGVFHGLGSETHLVIRG 217

Query: 195 PWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLE-ADI 253
              + R F   I      +Y  +GI + K +  V    N + +  ++ + D ++++  D 
Sbjct: 218 ETVL-RKFDECIQNTITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDE 276

Query: 254 VVVGVGGRPLISLF--KGQVAEN-KGGIETDDFFKTSADDVYAVGDV 297
           ++  +G +  + +      +  N    I  D++  T+  ++Y++GDV
Sbjct: 277 LIWTIGRKSHLGMGSENVGIKLNSHDQIIADEYQNTNVPNIYSLGDV 323

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* Length = 483

 Score = 88.8 bits (221), Expect = 3e-19
 Identities = 39/143 (27%), Positives = 63/143 (44%), Gaps = 11/143 (7%)

Query: 163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP-RLFTADIAAFYEGYYANKGIKI 221
           GK +VVG GYIGLE +  LK    + +++      +  R F   +A         +GI  
Sbjct: 188 GKTLVVGAGYIGLECAGFLKGLGYEPTVMVRS---IVLRGFDQQMAELVAASMEERGIPF 244

Query: 222 IKGTVAVGFTTNADGEV----KEVKLKDGRTLEADIVVVGVGGRPLIS---LFKGQVAEN 274
           ++ TV +      DG++    K V+  +      D V+  +G + L+    L    V   
Sbjct: 245 LRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQ 304

Query: 275 KGGIETDDFFKTSADDVYAVGDV 297
           K  I  D    T+  ++YAVGD+
Sbjct: 305 KDKIPVDSQEATNVANIYAVGDI 327

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} Length = 463

 Score = 88.7 bits (221), Expect = 3e-19
 Identities = 43/186 (23%), Positives = 70/186 (37%), Gaps = 22/186 (11%)

Query: 118 VIATGSTVLRLTDF-GVE-GADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGL 175
           VIA G          G E    +   F L  +                  ++ GGGYI +
Sbjct: 138 VIAVGGHPSPHDALPGHELCITSNEAFDLPALP--------------ESILIAGGGYIAV 183

Query: 176 ELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD 235
           E +       +  +++Y     +   F  D+          KGI+I+   +    + +AD
Sbjct: 184 EFANIFHGLGVKTTLIYRGKEIL-SRFDQDMRRGLHAAMEEKGIRILCEDIIQSVSADAD 242

Query: 236 GEVKEVKLKDGRTLEADIVVVGVGGRPLIS---LFKGQVAENKGG-IETDDFFKTSADDV 291
           G  +         + AD V++ +G  P  +   L    V  N+ G I  D F +TS   +
Sbjct: 243 G-RRVATTMKHGEIVADQVMLALGRMPNTNGLGLEAAGVRTNELGAIIVDAFSRTSTPGI 301

Query: 292 YAVGDV 297
           YA+GDV
Sbjct: 302 YALGDV 307

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* Length = 463

 Score = 86.0 bits (214), Expect = 2e-18
 Identities = 34/139 (24%), Positives = 56/139 (40%), Gaps = 6/139 (4%)

Query: 163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKII 222
            +  ++G GYIG+EL+  L+    +V++V  E   +   F   ++A        +GI+  
Sbjct: 167 KRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLL-FQFDPLLSATLAENMHAQGIETH 225

Query: 223 KGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS---LFKGQVAENKGG-I 278
                     +A G    V     R    D V+  VG  P      L    +     G +
Sbjct: 226 LEFAVAALERDAQG-TTLVAQDGTRLEGFDSVIWAVGRAPNTRDLGLEAAGIEVQSNGMV 284

Query: 279 ETDDFFKTSADDVYAVGDV 297
            TD +  T+   VYA+GD+
Sbjct: 285 PTDAYQNTNVPGVYALGDI 303

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* Length = 467

 Score = 85.7 bits (213), Expect = 3e-18
 Identities = 40/195 (20%), Positives = 70/195 (35%), Gaps = 32/195 (16%)

Query: 118 VIATGSTVLRLTDFGVEGA---DAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIG 174
           ++ATG++       G++ +    +        I   ++L             V+G   + 
Sbjct: 143 LVATGASPAVPPIPGLKESPYWTSTEALASDTI--PERLA------------VIGSSVVA 188

Query: 175 LELSAALKINNIDVSMVYPEPWCMPRLFT---ADIAAFYEGYYANKGIKIIKGTVAVGFT 231
           LEL+ A       V+++         LF      I       +  +GI++++ T A    
Sbjct: 189 LELAQAFARLGSKVTVL-----ARNTLFFREDPAIGEAVTAAFRAEGIEVLEHTQASQVA 243

Query: 232 TNADGEVKEVKLKDGRTLEADIVVVGVGGRP---LISLFKGQVAEN-KGGIETDDFFKTS 287
                 V          L AD ++V  G  P    ++L    V  N +G I  D   +TS
Sbjct: 244 HMDGEFVLTTT---HGELRADKLLVATGRTPNTRSLALDAAGVTVNAQGAIVIDQGMRTS 300

Query: 288 ADDVYAVGDVATFPM 302
             ++YA GD    P 
Sbjct: 301 NPNIYAAGDCTDQPQ 315

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* Length = 464

 Score = 84.5 bits (210), Expect = 7e-18
 Identities = 47/191 (24%), Positives = 78/191 (40%), Gaps = 20/191 (10%)

Query: 118 VIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKN-GKAVVVGGGYIGLE 176
           +IATGS+   +   G     A  + Y           E I +++     ++ G G IG+E
Sbjct: 139 IIATGSSTRLVP--GTS-LSANVVTY----------EEQILSRELPKSIIIAGAGAIGME 185

Query: 177 LSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG 236
               LK   +DV++V   P  +P    AD++   E  +   G+ I+  T           
Sbjct: 186 FGYVLKNYGVDVTIVEFLPRALP-NEDADVSKEIEKQFKKLGVTILTATKVESIADGGSQ 244

Query: 237 EVKEVKLKDGR-TLEADIVVVGVGGRPLIS---LFKGQVA-ENKGGIETDDFFKTSADDV 291
               V        L+A+ V+  +G  P +    L K  VA  ++  I  DD+ +T+   +
Sbjct: 245 VTVTVTKDGVAQELKAEKVLQAIGFAPNVEGYGLDKAGVALTDRKAIGVDDYMRTNVGHI 304

Query: 292 YAVGDVATFPM 302
           YA+GDV     
Sbjct: 305 YAIGDVNGLLQ 315

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* Length = 455

 Score = 83.3 bits (207), Expect = 2e-17
 Identities = 56/194 (28%), Positives = 83/194 (42%), Gaps = 28/194 (14%)

Query: 118 VIATGSTVLRLTDFGVEGADAKNIFYLREID--DADKLVEAIKAKKNGKAVVVGGGYIGL 175
           +IATGS  L      V   D + +     +   +A    E  K     + +VVGGG IGL
Sbjct: 134 LIATGSAPLIPPWAQV---DYERV-----VTSTEALSFPEVPK-----RLIVVGGGVIGL 180

Query: 176 ELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD 235
           EL         +V ++      +P     +++   E  +  +G+ I  G         A 
Sbjct: 181 ELGVVWHRLGAEVIVLEYMDRILP-TMDLEVSRAAERVFKKQGLTIRTGVRVTAVVPEAK 239

Query: 236 GEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAEN-------KGGIETDDFFKTSA 288
           G  + V+L+ G  LEAD V+V VG RP     +G   EN       +G I  D+  +T  
Sbjct: 240 G-AR-VELEGGEVLEADRVLVAVGRRPYT---EGLSLENAGLSTDERGRIPVDEHLRTRV 294

Query: 289 DDVYAVGDVATFPM 302
             +YA+GDV   PM
Sbjct: 295 PHIYAIGDVVRGPM 308

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* Length = 488

 Score = 83.0 bits (206), Expect = 2e-17
 Identities = 49/195 (25%), Positives = 76/195 (38%), Gaps = 34/195 (17%)

Query: 118 VIATGSTVLRLTDFGVEGADAKNI-----FYLREIDDADKLVEAIKAKKNGKAVVVGGGY 172
           VIATG      T   V+GA    I     F+L+E                GK +VVG  Y
Sbjct: 152 VIATGGRPRYPTQ--VKGALEYGITSDDIFWLKESP--------------GKTLVVGASY 195

Query: 173 IGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 232
           + LE +  L    +D +++        R F   +++    +  + G + +KG V      
Sbjct: 196 VALECAGFLTGIGLDTTVMMRSI--PLRGFDQQMSSLVTEHMESHGTQFLKGCVPSHIKK 253

Query: 233 NADGEVKEVKLKDG-----RTLEADIVVVGVGGRPLIS---LFKGQVAEN-KGG-IETDD 282
               +++ V  +D       T   D V+  +G  P      L K  ++ N K   I  D 
Sbjct: 254 LPTNQLQ-VTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDA 312

Query: 283 FFKTSADDVYAVGDV 297
              TS   +YA+GDV
Sbjct: 313 QEATSVPHIYAIGDV 327

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* Length = 437

 Score = 82.1 bits (203), Expect = 3e-17
 Identities = 58/368 (15%), Positives = 107/368 (29%), Gaps = 60/368 (16%)

Query: 9   VILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVC 68
           VILG G     AA E  +      E+ +IS        P+                    
Sbjct: 8   VILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSN---PW-------------- 50

Query: 69  VGSGG------ERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATG 122
           VG G          +  + + KGI  I      + D  ++ +  A G    Y  L+IATG
Sbjct: 51  VGVGWKERDDIAFPIRHYVERKGIHFIAQ-SAEQIDAEAQNITLADGNTVHYDYLMIATG 109

Query: 123 STVLRLTDFGVEGAD--AKNIFYLREIDDADKLVEAIKA-KKNGKAVVVGGGYIGLELS- 178
               +L    V G+D     +  +  +D A++     +A  +    +V+G    G     
Sbjct: 110 ---PKLAFENVPGSDPHEGPVQSICTVDHAERAFAEYQALLREPGPIVIGAM-AGASCFG 165

Query: 179 AALKI---------------NNIDVSMVYPEPWCMPRL--FTADIAAFYEGYYANKGIKI 221
            A +                     + +  EP+          D           +GI+ 
Sbjct: 166 PAYEYAMIVASDLKKRGMRDKIPSFTFITSEPYIGHLGIQGVGDSKGILTKGLKEEGIEA 225

Query: 222 IKGTVAVGFTTN---ADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGG- 277
                      N        ++ +      L     ++    + + ++   +   N GG 
Sbjct: 226 YTNCKVTKVEDNKMYVTQVDEKGETIKEMVLPVKFGMMIPAFKGVPAVAGVEGLCNPGGF 285

Query: 278 IETDDFFK-TSADDVYAVGDVATFPMKLYREMRRVE----HVDHARKSAEQAVKTIMATE 332
           +  D+  +     +++A G     P      +        ++         AV  I A  
Sbjct: 286 VLVDEHQRSKKYANIFAAGIAIAIPPVETTPVPTGAPKTGYM--IESMVSAAVHNIKADL 343

Query: 333 GGKTVTGY 340
            G+     
Sbjct: 344 EGRKGEQT 351

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* Length = 437

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 32/196 (16%), Positives = 64/196 (32%), Gaps = 57/196 (29%)

Query: 160 KKNGKAVVVGGGYIGLELSAALK---INNIDVSMVYPEPW-------------CMPRLFT 203
           + +   V++G G  G+  +  +K    +  +V+++    +                R   
Sbjct: 2   RGSAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKER--- 58

Query: 204 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL 263
            DIA     Y   KGI  I  +         D E + + L DG T+  D +++  G +  
Sbjct: 59  DDIAFPIRHYVERKGIHFIAQSA-EQI----DAEAQNITLADGNTVHYDYLMIATGPKLA 113

Query: 264 ISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQ 323
                G    ++G +++          +                   V+H + A    + 
Sbjct: 114 FENVPG-SDPHEGPVQS----------IC-----------------TVDHAERAFAEYQA 145

Query: 324 AVKTIMATEGGKTVTG 339
            ++     E G  V G
Sbjct: 146 LLR-----EPGPIVIG 156

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} Length = 466

 Score = 81.4 bits (202), Expect = 7e-17
 Identities = 42/191 (21%), Positives = 78/191 (40%), Gaps = 19/191 (9%)

Query: 118 VIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKN-GKAVVVGGGYIGLE 176
           +IA+G+   +L   GVE            +   D        +K     V++G GYIGLE
Sbjct: 137 IIASGAETAKLRLPGVE----------YCLTSDDIFGYKTSFRKLPQDMVIIGAGYIGLE 186

Query: 177 LSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG 236
           +++  ++  +   ++      +  L   DI        +   + I   +         D 
Sbjct: 187 IASIFRLMGVQTHIIEMLDRALITLEDQDIVNTLL---SILKLNIKFNSPVTEVKKIKDD 243

Query: 237 EVKEVK-LKDG--RTLEADIVVVGVGGRPLIS--LFKGQVAENKGGIETDDFFKTSADDV 291
           E + +   KDG  +++  + VV+  G RP+I     +  ++ +K GI  D+  KT+  +V
Sbjct: 244 EYEVIYSTKDGSKKSIFTNSVVLAAGRRPVIPEGAREIGLSISKTGIVVDETMKTNIPNV 303

Query: 292 YAVGDVATFPM 302
           +A GD      
Sbjct: 304 FATGDANGLAP 314

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... Length = 478

 Score = 81.4 bits (202), Expect = 7e-17
 Identities = 44/195 (22%), Positives = 74/195 (37%), Gaps = 30/195 (15%)

Query: 118 VIATGSTVLRLTDFGVEGA----DAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYI 173
           +IATG       +  + GA     +   F L E+               G++V+VG GYI
Sbjct: 153 LIATGGMPSTPHESQIPGASLGITSDGFFQLEELP--------------GRSVIVGAGYI 198

Query: 174 GLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN 233
            +E++  L       S++      + R F + I+        N G++++K +        
Sbjct: 199 AVEMAGILSALGSKTSLMIRHDKVL-RSFDSMISTNCTEELENAGVEVLKFSQVKEVKKT 257

Query: 234 ADG-------EVKEVKLKDGRTLEADIVVVGVGGRPLIS---LFKGQVAEN-KGGIETDD 282
             G        V           + D ++  +G  P      L K  +  + KG I  D+
Sbjct: 258 LSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDE 317

Query: 283 FFKTSADDVYAVGDV 297
           F  T+   +YAVGDV
Sbjct: 318 FQNTNVKGIYAVGDV 332

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* Length = 478

 Score = 81.0 bits (201), Expect = 9e-17
 Identities = 53/221 (23%), Positives = 89/221 (40%), Gaps = 27/221 (12%)

Query: 93  EIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREID--DA 150
            +   D    T+     L  K  I  +ATGS V       +   D + I     +    A
Sbjct: 127 RVTPVDGLEGTVKEDHILDVKNII--VATGSEVTPFPGIEI---DEEKI-----VSSTGA 176

Query: 151 DKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFY 210
             L E  K     +  ++GGG IGLE+ +        V++V  +P         ++A   
Sbjct: 177 LSLKEIPK-----RLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGA-SMDGEVAKAT 230

Query: 211 EGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGR-----TLEADIVVVGVGGRP--- 262
           + +   +G+     T  +    N D  V E+ ++D +      LEA++++V VG RP   
Sbjct: 231 QKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYIA 290

Query: 263 LISLFKGQVA-ENKGGIETDDFFKTSADDVYAVGDVATFPM 302
            +   K  +  + +G +  DD F +    +  VGDV   PM
Sbjct: 291 GLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVGDVTFGPM 331

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* Length = 474

 Score = 80.6 bits (200), Expect = 1e-16
 Identities = 48/195 (24%), Positives = 83/195 (42%), Gaps = 23/195 (11%)

Query: 118 VIATGSTVLRLTDFGVEGADAKNIFYLREID--DADKLVEAIKAKKNGKAVVVGGGYIGL 175
           +IATGS V       +   D   I     +    A  L +  +     K VV+G G IG+
Sbjct: 145 LIATGSEVTPFPGITI---DEDTI-----VSSTGALSLKKVPE-----KMVVIGAGVIGV 191

Query: 176 ELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD 235
           EL +  +    DV+ V             +I+  ++     +G K    T   G T  +D
Sbjct: 192 ELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSD 251

Query: 236 GEVK-EVKLKDG---RTLEADIVVVGVGGRP---LISLFKGQVAEN-KGGIETDDFFKTS 287
           G++   ++   G     +  D+++V +G RP    + L +  +  + +G I  +  F+T 
Sbjct: 252 GKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTK 311

Query: 288 ADDVYAVGDVATFPM 302
             ++YA+GDV   PM
Sbjct: 312 IPNIYAIGDVVAGPM 326

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 458

 Score = 79.9 bits (198), Expect = 2e-16
 Identities = 57/212 (26%), Positives = 85/212 (40%), Gaps = 22/212 (10%)

Query: 96  RADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREID--DADKL 153
            A +     +   G   + + L++ATGS+ + L    + G           I   +A   
Sbjct: 117 WAKVLDGKQVEVDGQRIQCEHLLLATGSSSVELPMLPLGG---------PVISSTEALAP 167

Query: 154 VEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGY 213
               +       VVVGGGYIGLEL  A +     VS+V      +P  + +++ A     
Sbjct: 168 KALPQ-----HLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILP-TYDSELTAPVAES 221

Query: 214 YANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP---LISLFKGQ 270
               GI +  G    G        +          LEAD V+V VG RP     +L    
Sbjct: 222 LKKLGIALHLGHSVEG--YENGCLLANDGKGGQLRLEADRVLVAVGRRPRTKGFNLECLD 279

Query: 271 VAENKGGIETDDFFKTSADDVYAVGDVATFPM 302
           +  N   I  D+  +TS  +V+A+GDVA  PM
Sbjct: 280 LKMNGAAIAIDERCQTSMHNVWAIGDVAGEPM 311

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* Length = 464

 Score = 79.1 bits (196), Expect = 4e-16
 Identities = 54/219 (24%), Positives = 93/219 (42%), Gaps = 29/219 (13%)

Query: 96  RADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLV- 154
            A +     +   G  +  + L++ATGS  L L  F                 +   +  
Sbjct: 114 FARLVGPKEVEVGGERYGAKSLILATGSEPLELKGF--------------PFGE--DVWD 157

Query: 155 --EAIKAKKN--GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFY 210
              A+K ++    + +V+GGG +GLEL    +    +V+++   P  +P     + AA  
Sbjct: 158 STRALKVEEGLPKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILP-QGDPETAALL 216

Query: 211 EGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG---RTLEADIVVVGVGGRP---LI 264
                 +GI++   T AVG+    DG    ++  +G     +  D V+V VG +P    +
Sbjct: 217 RRALEKEGIRVRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRTEGL 276

Query: 265 SLFKGQVA-ENKGGIETDDFFKTSADDVYAVGDVATFPM 302
            L K  V  + +G I  +   +TS   VYA+GD A  P+
Sbjct: 277 GLEKAGVKVDERGFIRVNARMETSVPGVYAIGDAARPPL 315

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} Length = 491

 Score = 79.1 bits (196), Expect = 5e-16
 Identities = 55/197 (27%), Positives = 80/197 (40%), Gaps = 27/197 (13%)

Query: 118 VIATGSTVLRLTDFGVEGADAKNIFYLREID--DADKLVEAIKAKKNGKAVVVGGGYIGL 175
           VIATGS V  +    V   D K I     +    A  L +          +VVGGG IGL
Sbjct: 163 VIATGSDVAGIPGVEVA-FDEKTI-----VSSTGALALEKVPA-----SMIVVGGGVIGL 211

Query: 176 ELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD 235
           EL +        V++V      +      ++A   +     +GI    G    G   + D
Sbjct: 212 ELGSVWARLGAKVTVVEFLDTILG-GMDGEVAKQLQRMLTKQGIDFKLGAKVTGAVKSGD 270

Query: 236 G---EVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAEN-------KGGIETDDFFK 285
           G     + VK  +  TL+A++V++  G +P      G            +G +E D  F+
Sbjct: 271 GAKVTFEPVKGGEATTLDAEVVLIATGRKPST---DGLGLAKAGVVLDSRGRVEIDRHFQ 327

Query: 286 TSADDVYAVGDVATFPM 302
           TS   VYA+GDV   PM
Sbjct: 328 TSIAGVYAIGDVVRGPM 344

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* Length = 519

 Score = 79.2 bits (196), Expect = 5e-16
 Identities = 34/152 (22%), Positives = 59/152 (38%), Gaps = 20/152 (13%)

Query: 163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKII 222
           GK +VVG  Y+ LE +  L    +DV+++        R F  D+A     +    GIK I
Sbjct: 211 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSILL--RGFDQDMANKIGEHMEEHGIKFI 268

Query: 223 KGTVAVGFTTNADGE--VKEVKLKDGRT-----LEADIVVVGVGGRPLISLFKG------ 269
           +  V +       G      V  +   +      E + V++ +G        +       
Sbjct: 269 RQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACT---RKIGLETV 325

Query: 270 --QVAENKGGIETDDFFKTSADDVYAVGDVAT 299
             ++ E  G I   D  +T+   +YA+GD+  
Sbjct: 326 GVKINEKTGKIPVTDEEQTNVPYIYAIGDILE 357

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 470

 Score = 78.3 bits (194), Expect = 6e-16
 Identities = 59/197 (29%), Positives = 84/197 (42%), Gaps = 29/197 (14%)

Query: 118 VIATGSTVLRLTDFGVEGADAKNIFYLREID--DADKLVEAIKAKKNGKAVVVGGGYIGL 175
           +IATGS V  L    +   D K I     +    A  L E  K     K VV+G GYIGL
Sbjct: 144 IIATGSDVKSLPGVTI---DEKKI-----VSSTGALALSEIPK-----KLVVIGAGYIGL 190

Query: 176 ELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD 235
           E+ +       +V++V      +P    A+I   ++     +G+K    T  VG  T+ D
Sbjct: 191 EMGSVWGRIGSEVTVVEFASEIVP-TMDAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGD 249

Query: 236 GEVKEVKLKDG---RTLEADIVVVGVGGRPLISLFKGQVAEN-------KGGIETDDFFK 285
           G    V+   G     +EAD+V+V  G  P      G   +         G I  ++ F 
Sbjct: 250 GVKLTVEPSAGGEQTIIEADVVLVSAGRTPFT---SGLNLDKIGVETDKLGRILVNERFS 306

Query: 286 TSADDVYAVGDVATFPM 302
           T+   VYA+GDV   PM
Sbjct: 307 TNVSGVYAIGDVIPGPM 323

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* Length = 476

 Score = 77.9 bits (193), Expect = 1e-15
 Identities = 48/192 (25%), Positives = 76/192 (39%), Gaps = 21/192 (10%)

Query: 118 VIATGSTVLRLTDFGVEGADAKNIFYLREID--DADKLVEAIKAKKNGKAVVVGGGYIGL 175
           ++A+GS  + +    V   D   I     +D   A             K  V+G G IGL
Sbjct: 147 ILASGSKPVEIPPAPV---DQDVI-----VDSTGALDFQNVPG-----KLGVIGAGVIGL 193

Query: 176 ELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD 235
           EL +       +V+++      +P      +A   +     +G+KI+ G    G      
Sbjct: 194 ELGSVWARLGAEVTVLEAMDKFLP-AVDEQVAKEAQKILTKQGLKILLGARVTGTEVKNK 252

Query: 236 G-EVKEVKLKDGRTLEADIVVVGVGGRP---LISLFKGQVA-ENKGGIETDDFFKTSADD 290
              VK V  +  ++   D ++V VG RP    +      V  + +G I  DD+  TS   
Sbjct: 253 QVTVKFVDAEGEKSQAFDKLIVAVGRRPVTTDLLAADSGVTLDERGFIYVDDYCATSVPG 312

Query: 291 VYAVGDVATFPM 302
           VYA+GDV    M
Sbjct: 313 VYAIGDVVRGAM 324

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* Length = 598

 Score = 76.6 bits (189), Expect = 3e-15
 Identities = 48/200 (24%), Positives = 72/200 (36%), Gaps = 39/200 (19%)

Query: 118 VIATGSTVLRLTDFGVEGADAKNI-----FYLREIDDADKLVEAIKAKKNGKAVVVGGGY 172
           ++ATG          + GA    I     F L                  GK +V+G  Y
Sbjct: 254 ILATGERPKYP---EIPGAVEYGITSDDLFSLPYFP--------------GKTLVIGASY 296

Query: 173 IGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTV------ 226
           + LE +  L     DV+++        R F   +A     Y  N G+K  K  V      
Sbjct: 297 VALECAGFLASLGGDVTVMVRSILL--RGFDQQMAEKVGDYMENHGVKFAKLCVPDEIKQ 354

Query: 227 --AVGFTTNADGEVKE-VKLKDGRTLE--ADIVVVGVGGRPLIS---LFKGQVAENKGG- 277
              V    N  G +       DG+  E   + V+  VG  P +S        V  +K G 
Sbjct: 355 LKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLCETVGVKLDKNGR 414

Query: 278 IETDDFFKTSADDVYAVGDV 297
           +   D  +T+  +VYA+GD+
Sbjct: 415 VVCTDDEQTTVSNVYAIGDI 434

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} Length = 492

 Score = 75.3 bits (186), Expect = 6e-15
 Identities = 61/349 (17%), Positives = 99/349 (28%), Gaps = 80/349 (22%)

Query: 1   MAEKSFKYVILGGGVSAGY-AAREFAKQGVKPGELAIISKEVAPYERPAL---------- 49
           M   +    I+G G +AG  A R   K   K   + +I       E  A           
Sbjct: 4   MKVINVDVAIIGTG-TAGMGAYRAAKKHTDK---VVLI-------EGGAYGTTCARVGCM 52

Query: 50  -SKAYL----FPEGTARLPGFHVCVGSG---GERLLPEWYKEK---------GIELILST 92
            SK  +         ++   F + V      G+ ++     E+          +E     
Sbjct: 53  PSKLLIAAADASYHASQTDLFGIQVDRISVNGKAVMKRIQTERDRFVGFVVESVESFDEQ 112

Query: 93  EIVR--ADIASKTLLS---ATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREI 147
           + +R  A    +  L     + +I K   +VIATGS                        
Sbjct: 113 DKIRGFAKFLDEHTLQVDDHSQVIAKR--IVIATGSRPNYPEFLAA-------------- 156

Query: 148 DDADKLV---EAIKAKKN-GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFT 203
               +L+      +         V G G IGLEL  AL    + V +          L  
Sbjct: 157 -AGSRLLTNDNLFELNDLPKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVAN-LQD 214

Query: 204 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG--RTLEADIVVVGVGGR 261
            ++  + E  + N+          +      D        K G   T     V+   G +
Sbjct: 215 EEMKRYAEKTF-NEEFYFDAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAATGRK 273

Query: 262 PLISLFKGQVAEN-------KGGIETDDF-FKTSADDVYAVGDVATFPM 302
             +        EN       K     D+   +TS D ++  GD      
Sbjct: 274 ANV---DKLGLENTSIELDKKNSPLFDELTLQTSVDHIFVAGDANNTLT 319

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 455

 Score = 74.9 bits (185), Expect = 9e-15
 Identities = 51/194 (26%), Positives = 89/194 (45%), Gaps = 26/194 (13%)

Query: 118 VIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLV---EAIKAKKN-GKAVVVGGGYI 173
           +IATGS  + L +F              +  +  +++    A+   +     VV+GGGYI
Sbjct: 138 IIATGSRPIELPNF--------------KFSN--RILDSTGALNLGEVPKSLVVIGGGYI 181

Query: 174 GLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN 233
           G+EL  A       V+++      +   F   +AA  +     KG++++   +A G    
Sbjct: 182 GIELGTAYANFGTKVTILEGAGEILS-GFEKQMAAIIKKRLKKKGVEVVTNALAKGAEER 240

Query: 234 ADG-EVKEVKLKDGRTLEADIVVVGVGGRP---LISLFKGQVA-ENKGGIETDDFFKTSA 288
            DG  V      + +T++AD V+V VG RP    + L +  +   N+G IE D   +TS 
Sbjct: 241 EDGVTVTYEANGETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRTSV 300

Query: 289 DDVYAVGDVATFPM 302
            +++A+GD+   P 
Sbjct: 301 PNIFAIGDIVPGPA 314

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* Length = 482

 Score = 74.9 bits (185), Expect = 1e-14
 Identities = 50/193 (25%), Positives = 74/193 (38%), Gaps = 23/193 (11%)

Query: 118 VIATGSTVLRLTDFGVEGADAKNIFYLREID--DADKLVEAIKAKKNGKAVVVGGGYIGL 175
           +IA GS V +L     +          R ID   A  L E        K +++GGG IGL
Sbjct: 153 IIAAGSRVTKLPFIPEDP---------RIIDSSGALALKEVPG-----KLLIIGGGIIGL 198

Query: 176 ELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD 235
           E+          + +V      M      D+   ++     +   I+  T  V      D
Sbjct: 199 EMGTVYSTLGSRLDVVEMMDGLMQ-GADRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKED 257

Query: 236 GEVKEVKLKDGR--TLEADIVVVGVGGRP---LISLFKGQVA-ENKGGIETDDFFKTSAD 289
           G     +  +        D V+V  G  P   LIS  K  VA  ++G IE D   +T+  
Sbjct: 258 GVYVTFEGANAPKEPQRYDAVLVAAGRAPNGKLISAEKAGVAVTDRGFIEVDKQMRTNVP 317

Query: 290 DVYAVGDVATFPM 302
            +YA+GD+   PM
Sbjct: 318 HIYAIGDIVGQPM 330

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} Length = 468

 Score = 71.8 bits (177), Expect = 1e-13
 Identities = 64/195 (32%), Positives = 88/195 (45%), Gaps = 24/195 (12%)

Query: 118 VIATGSTVLRLTDFGVEGADAKNIFYLREID--DADKLVEAIKAKKNGKAVVVGGGYIGL 175
           +IATGS    L        D K +     +    A  L    K       VV+GGG IGL
Sbjct: 141 IIATGSEPTELPFLPF---DEKVV-----LSSTGALALPRVPK-----TMVVIGGGVIGL 187

Query: 176 ELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK-GIKIIKGTVAVGFTTNA 234
           EL +       +V++V   P C P     D+     G  A    +K +  T  VG T N 
Sbjct: 188 ELGSVWARLGAEVTVVEFAPRCAP-TLDEDVTNALVGALAKNEKMKFMTSTKVVGGTNNG 246

Query: 235 DGEVKEVKLKDGR--TLEADIVVVGVGGRP---LISLFKGQVA-ENKGGIETDDFFKTSA 288
           D    EV+ K+G+  T+  + ++V VG RP    + L K  VA   +G ++  D F+TS 
Sbjct: 247 DSVSLEVEGKNGKRETVTCEALLVSVGRRPFTGGLGLDKINVAKNERGFVKIGDHFETSI 306

Query: 289 DDVYAVGDVATF-PM 302
            DVYA+GDV    PM
Sbjct: 307 PDVYAIGDVVDKGPM 321

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* Length = 304

 Score = 69.5 bits (171), Expect = 2e-13
 Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 8/93 (8%)

Query: 215 ANKGIKIIKGTVA--VGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG-QV 271
           +NK I +I  ++    G      G +K+V+   G  +E     +           +    
Sbjct: 191 SNKNIPVITESIRTLQG----EGGYLKKVEFHSGLRIERAGGFIVPTFFRPNQFIEQLGC 246

Query: 272 AENKGG-IETDDFFKTSADDVYAVGDVATFPMK 303
                G    DDF +TS  ++Y  G+  T    
Sbjct: 247 ELQSNGTFVIDDFGRTSEKNIYLAGETTTQGPS 279

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} Length = 690

 Score = 69.6 bits (171), Expect = 7e-13
 Identities = 42/237 (17%), Positives = 70/237 (29%), Gaps = 45/237 (18%)

Query: 77  LPEWY-----KEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST-----VL 126
           + E+      +   +E+   + +   DI            F ++ ++ ATG+T     V 
Sbjct: 445 VKEYREAVLAELPNVEIYRESPMTGDDIVE----------FGFEHVITATGATWRTDGVA 494

Query: 127 RLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVV---GGGYIGLELSAALKI 183
           R     +  A+   +    ++               GK VVV      Y+G  ++  L  
Sbjct: 495 RFHTTALPIAEGMQVLGPDDLFAGRLPD--------GKKVVVYDDDHYYLGGVVAELLAQ 546

Query: 184 NNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL 243
              +VS+V P                 +      G+  +     V       G V     
Sbjct: 547 KGYEVSIVTPGAQVSSWTNNTFEVNRIQRRLIENGVARVTDHAVVAVG---AGGVTVRDT 603

Query: 244 KDG--RTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVA 298
                R LE D VV+     P   L+   VA    G             V  +GD  
Sbjct: 604 YASIERELECDAVVMVTARLPREELYLDLVARRDAGEIA---------SVRGIGDAW 651

>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit); electron transport(flavocytochrome); HET: FAD HEM; 2.53A {Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 401

 Score = 59.4 bits (144), Expect = 7e-10
 Identities = 67/417 (16%), Positives = 124/417 (29%), Gaps = 72/417 (17%)

Query: 9   VILGGGVSAGY-AAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHV 67
           V++GGG + G  AA+          E+ +I            +  Y              
Sbjct: 6   VVVGGG-TGGATAAKYIKLAD-PSIEVTLIEP----------NTDYYTC------YLS-N 46

Query: 68  CVGSGGERLLPEWYKE------KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIAT 121
            V  GG+R L             GI+++        D   K + +A G  F Y   V+A 
Sbjct: 47  EVI-GGDRKLESIKHGYDGLRAHGIQVV-HDSATGIDPDKKLVKTAGGAEFGYDRCVVAP 104

Query: 122 GSTVLRLTDFG-VEG----ADAKNIFYLREIDDADKLVEAIKAKKNGKAVVV-------- 168
           G  +     +  +EG    A AK     +  +    L + ++   +G  VV+        
Sbjct: 105 GIEL----IYDKIEGYSEEAAAKLPHAWKAGEQTAILRKQLEDMADGGTVVIAPPAAPFR 160

Query: 169 --GGGYIGLELSAA-LKINNI--DVSMVYPEP-WCMPRLFTADIAAFYEGYYANKGIKII 222
              G Y      A  LK +     V ++     +     F+      Y     N  I+  
Sbjct: 161 CPPGPYERASQVAYYLKAHKPMSKVIILDSSQTFSKQSQFSKGWERLYGFGTENAMIEWH 220

Query: 223 KGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETD- 281
            G  +       DG    V+   G   +AD++ +    R         +  + G    D 
Sbjct: 221 PGPDSA--VVKVDGGEMMVETAFGDEFKADVINLIPPQRAGKIAQIAGLTNDAGWCPVDI 278

Query: 282 -DFFKTSADDVYAVGDVATF-PMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTV-- 337
             F  +    ++ +GD +   PM              A    + A   ++    G+    
Sbjct: 279 KTFESSIHKGIHVIGDASIANPMPKSGYS--------ANSQGKVAAAAVVVLLKGEEPGT 330

Query: 338 ---TGYDYLPYFYSRAFDLSWQF-YGDNVGDTVLFGDNDLASATHKFGTYWIKDGKV 390
                  Y     +    ++  +    +        D+   +        W+ + +V
Sbjct: 331 PSYLNTCYSILAPAYGISVAAIYRPNADGSAIESVPDSGGVTPVDA--PDWVLEREV 385

>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit); electron transport(flavocytochrome); HET: FAD HEM; 2.53A {Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 401

 Score = 41.3 bits (97), Expect = 4e-04
 Identities = 25/112 (22%), Positives = 41/112 (36%), Gaps = 18/112 (16%)

Query: 159 AKKNGKAVVVGGGYIGLELSAALKI--NNIDVSMVYPEP---------WCMPRLFTADIA 207
           A +  K VVVGGG  G   +  +K+   +I+V+++ P             +      +  
Sbjct: 1   AGR--KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESI 58

Query: 208 AFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVG 259
                     GI+++  +      T  D + K VK   G     D  VV  G
Sbjct: 59  KHGYDGLRAHGIQVVHDSA-----TGIDPDKKLVKTAGGAEFGYDRCVVAPG 105

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} Length = 335

 Score = 58.0 bits (141), Expect = 2e-09
 Identities = 38/215 (17%), Positives = 77/215 (35%), Gaps = 31/215 (14%)

Query: 103 TLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADA---KNIFYLREIDDADKLVEAIKA 159
            + ++ G  +  + ++IA G         G  G      + ++Y   +    +       
Sbjct: 99  KVTTSQGNAYTAKAVIIAAGVGAFEPRRIGAPGEREFEGRGVYYA--VKSKAEF------ 150

Query: 160 KKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR--LFTA--DIAAFYEGYYA 215
            +  + ++VGGG   ++ +  L      +++++       R   F A           + 
Sbjct: 151 -QGKRVLIVGGGDSAVDWALNLLDTARRITLIH-------RRPQFRAHEASVKELMKAHE 202

Query: 216 NKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRT-----LEADIVVVGVGGRPLISLFKG- 269
              ++++            D  V+   +   +T     LE D V++  G    +      
Sbjct: 203 EGRLEVLTPYELRRV--EGDERVRWAVVFHNQTQEELALEVDAVLILAGYITKLGPLANW 260

Query: 270 QVAENKGGIETDDFFKTSADDVYAVGDVATFPMKL 304
            +A  K  I+ D    TS   VYA GD+ T+P KL
Sbjct: 261 GLALEKNKIKVDTTMATSIPGVYACGDIVTYPGKL 295

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} Length = 360

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 49/224 (21%), Positives = 92/224 (41%), Gaps = 26/224 (11%)

Query: 92  TEIVRADIASKTLLSATGLIFKYQILVIATGSTVL---RLTDFG-VEGADAKNIFYLREI 147
           T+  + D  +    + TG +++ + ++IA G       +L   G ++     +++Y   +
Sbjct: 98  TKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGSSVYYA--V 155

Query: 148 DDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTA--D 205
              +         K  + V+VGGG   L+ +  L  N   V++V+         F     
Sbjct: 156 KSVEDF-------KGKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGH-----EFQGHGK 203

Query: 206 IAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG----RTLEADIVVVGVGGR 261
            A   E   AN  I +   T       + +G +  V L+       T+EAD +++ +G +
Sbjct: 204 TAHEVERARANGTIDVYLETEVASIEES-NGVLTRVHLRSSDGSKWTVEADRLLILIGFK 262

Query: 262 PLISLFKG-QVAENKGGIETDDFFKTSADDVYAVGDVATFPMKL 304
             +       +   +  +  D   KTS D +YA GD+A +P KL
Sbjct: 263 SNLGPLARWDLELYENALVVDSHMKTSVDGLYAAGDIAYYPGKL 306

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} Length = 297

 Score = 57.2 bits (139), Expect = 3e-09
 Identities = 31/146 (21%), Positives = 53/146 (36%), Gaps = 20/146 (13%)

Query: 161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIK 220
             GK  V+    + +    AL + +   +  +           AD  A      A +G++
Sbjct: 140 DQGKIGVIAASPMAIH--HALMLPDWGETTFFTN---GIVEPDADQHALL----AARGVR 190

Query: 221 IIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG---QVAENKGG 277
           +    +      +AD     V L DGR++    +      R  +   +     V E   G
Sbjct: 191 VETTRIR-EIAGHAD-----VVLADGRSIALAGLFTQPKLRITVDWIEKLGCAVEEGPMG 244

Query: 278 --IETDDFFKTSADDVYAVGDVATFP 301
             I TD   +T+A  ++A GDVA   
Sbjct: 245 STIVTDPMKQTTARGIFACGDVARPA 270

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A Length = 521

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 36/151 (23%), Positives = 61/151 (40%), Gaps = 17/151 (11%)

Query: 161 KNGKAVVVGGGYIGLELSAALKINNI--DVSMVYPEPWCMPRLFTADIAAFYEGYYANKG 218
           K  +  V+GGG  G+E  AA+ +  I   V+++   P        AD     +   + K 
Sbjct: 354 KGKRVAVIGGGNSGVE--AAIDLAGIVEHVTLLEFAP-----EMKAD-QVLQDKVRSLKN 405

Query: 219 IKIIKGTVAVGFTTNADGEVKEVKLKDGRT-----LEADIVVVGVGGRPLISLFKGQVAE 273
           + II          +   +V  ++ +D  +     +    + V +G  P     +G +  
Sbjct: 406 VDIILNAQTTEVKGD-GSKVVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTHWLEGALER 464

Query: 274 NKGG-IETDDFFKTSADDVYAVGDVATFPMK 303
           N+ G I  D   +TS   V+A GD  T P K
Sbjct: 465 NRMGEIIIDAKCETSVKGVFAAGDCTTVPYK 495

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* Length = 332

 Score = 55.3 bits (134), Expect = 1e-08
 Identities = 35/202 (17%), Positives = 79/202 (39%), Gaps = 37/202 (18%)

Query: 117 LVIATGSTVLRLTDFGVEGADA---KNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYI 173
           ++I  G+   +     +E A+    KN+ Y   +DD  K           +  ++GGG  
Sbjct: 115 VIITAGNGAFKPRKLELENAEQYEGKNLHYF--VDDLQKF-------AGRRVAILGGGDS 165

Query: 174 GLELSAALKINNIDVSMVYPEPWCMPR--LFTA---DIAAFYEGYYANKGIKIIKGTVAV 228
            ++ +  L+    +VS+++       R   F A    +   +        + ++   V  
Sbjct: 166 AVDWALMLEPIAKEVSIIH-------RRDKFRAHEHSVENLHAS-----KVNVLTPFVPA 213

Query: 229 GFTTNADGEVKEVKLKDGRT-----LEADIVVVGVGGRPLISLFKG-QVAENKGGIETDD 282
                 + +++++ L++ +      LE D ++V  G    +   K   +   K  I    
Sbjct: 214 EL--IGEDKIEQLVLEEVKGDRKEILEIDDLIVNYGFVSSLGPIKNWGLDIEKNSIVVKS 271

Query: 283 FFKTSADDVYAVGDVATFPMKL 304
             +T+ +  +A GD+ T+  K+
Sbjct: 272 TMETNIEGFFAAGDICTYEGKV 293

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* Length = 1025

 Score = 55.6 bits (134), Expect = 2e-08
 Identities = 58/322 (18%), Positives = 103/322 (31%), Gaps = 69/322 (21%)

Query: 79  EWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADA 138
           E  K+ G+++I    +   +I   TL         Y+   I  G    +  D        
Sbjct: 246 ELMKDLGVKIICGKSLSENEITLNTLKEE-----GYKAAFIGIGLPEPKTDDIFQGLTQD 300

Query: 139 KNIF----YLREIDDADKLVEAIKA----KKNGKAVVVGGGYIGLELSA------ALKIN 184
           +  +    +L  +  + K              G  +V+G G       A      AL+  
Sbjct: 301 QGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGDT-----AFDCATSALRCG 355

Query: 185 NIDVSMVY----PEPWCMPRLFTADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVK 239
              V +V+         +        A   E   A +   + +             G + 
Sbjct: 356 ARRVFLVFRKGFVN---IR-------AVPEEVELAKEEKCEFLPFLSPRKVIVK-GGRIV 404

Query: 240 EVKLK------DGR---------TLEADIVVVGVGGR---PLISLFKGQVAENK-GGIET 280
            V+         G+          L+AD+V+   G     P +      +  N+    E 
Sbjct: 405 AVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEV 464

Query: 281 DDF-FKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTG 339
           D    +TS   V+A GD+             VE V+  ++++    K I A + G +V+ 
Sbjct: 465 DPETMQTSEPWVFAGGDIVGMANTT------VESVNDGKQASWYIHKYIQA-QYGASVSA 517

Query: 340 YDYLPYFYSRAF--DLSWQFYG 359
              LP FY+     D+S +  G
Sbjct: 518 KPELPLFYTPVDLVDISVEMAG 539

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} Length = 456

 Score = 51.7 bits (125), Expect = 2e-07
 Identities = 59/265 (22%), Positives = 94/265 (35%), Gaps = 72/265 (27%)

Query: 79  EWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADA 138
           +   + G+    + E+ R D +   L        K+  +++ATG    R  D    G+  
Sbjct: 180 KLLADAGVIYHPNFEVGR-DASLPELRR------KHVAVLVATGVYKAR--DIKAPGSGL 230

Query: 139 KNIF----YL-----REIDDADKLVEA--IKAKKNGKAVVV-GGGYIG-------LELSA 179
            NI     YL       + D  +  E   + A   GK VVV GGG          +   A
Sbjct: 231 GNIVAALDYLTTSNKVSLGDTVEAYENGSLNAA--GKHVVVLGGGDTAMDCVRTAIRQGA 288

Query: 180 ALKINNIDVSMVYPEPWC-MPRLFTADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGE 237
                   V  +Y      MP        +  E  +A + G++ I      GFT   D  
Sbjct: 289 T------SVKCLYRRDRKNMP-------GSQREVAHAEEEGVEFIWQAAPEGFT--GDTV 333

Query: 238 VKEVKL---------KDGR-----------TLEADIVVVGVG--GRPLISLFKG-QVAEN 274
           V  V+            GR           T++AD+V+  +G     L + F   ++   
Sbjct: 334 VTGVRAVRIHLGVADATGRQTPQVIEGSEFTVQADLVIKALGFEPEDLPNAFDEPELKVT 393

Query: 275 K-GGIETD-DFFKTSADDVYAVGDV 297
           + G +  D     T+ D V+A GD+
Sbjct: 394 RWGTLLVDHRTKMTNMDGVFAAGDI 418

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 Length = 310

 Score = 50.9 bits (123), Expect = 3e-07
 Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 7/96 (7%)

Query: 214 YANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRT-----LEADIVVVGVGGRPLISLFK 268
            + K + II          +    V  ++ +D  +     +E   + V +G  P  +  +
Sbjct: 190 RSLKNVDIILNAQTTEVKGDGSK-VVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTNWLE 248

Query: 269 GQVAENKGG-IETDDFFKTSADDVYAVGDVATFPMK 303
           G V  N+ G I  D   +T+   V+A GD  T P K
Sbjct: 249 GAVERNRMGEIIIDAKCETNVKGVFAAGDCTTVPYK 284

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* Length = 729

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 36/240 (15%), Positives = 70/240 (29%), Gaps = 47/240 (19%)

Query: 82  KEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNI 141
           K K  +L L  + + AD   +         +    ++IATG+        G        I
Sbjct: 457 KNKESQLALGQKPMTADDVLQ---------YGADKVIIATGARWNTD---GTNCLTHDPI 504

Query: 142 FYLREIDDADKLV----EAIKAKKN-GKAVVV---GGGYIGLELSAALKINNIDVSMVYP 193
                 D +        + +  KK  GK VV+      ++   L+  L     +V++V  
Sbjct: 505 ---PGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSG 561

Query: 194 EPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNA---------------DGEV 238
                   FT +             ++ +                            G  
Sbjct: 562 VHLANYMHFTLEYPNMMR-RLHELHVEELGDHFCSRIEPGRMEIYNIWGDGSKRTYRGPG 620

Query: 239 KEVKLKDG--RTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGD 296
              +  +   R +E D +V+  G     +L+    A         ++ +     +Y +GD
Sbjct: 621 VSPRDANTSHRWIEFDSLVLVTGRHSECTLWNELKARES------EWAENDIKGIYLIGD 674

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} Length = 325

 Score = 49.1 bits (118), Expect = 1e-06
 Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 11/98 (11%)

Query: 215 ANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRT-----LEADIVVVGVGGRPLISLFKG 269
           AN  +K I  T            V  VKL++ +T     L  D V + +G  P  +  K 
Sbjct: 199 ANPKMKFIWDTAVEEI--QGADSVSGVKLRNLKTGEVSELATDGVFIFIGHVPNTAFVKD 256

Query: 270 QVAENKGG-IETDDFFKTSADDVYAVGDVATFPMKLYR 306
            V+    G ++  D   T+   ++A GDV+     +YR
Sbjct: 257 TVSLRDDGYVDVRDEIYTNIPMLFAAGDVSD---YIYR 291

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} Length = 319

 Score = 48.7 bits (117), Expect = 2e-06
 Identities = 40/155 (25%), Positives = 56/155 (36%), Gaps = 25/155 (16%)

Query: 161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVY-----PEPWCMPRLFTADIAAFYEGYYA 215
           K  + V +GGG  G    AA+ ++   V  V      P+       +  +    Y     
Sbjct: 154 KGKRVVTIGGGNSGAI--AAISMSEY-VKNVTIIEYMPK-------YMCE--NAYVQEIK 201

Query: 216 NKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRT-----LEADIVVVGVGGRPLISLFKGQ 270
            + I  I          +    V  VK KD  T     +E D V + VG  P  S  K  
Sbjct: 202 KRNIPYIMNAQVTEIVGDGKK-VTGVKYKDRTTGEEKLIETDGVFIYVGLIPQTSFLKDS 260

Query: 271 -VAENKGG-IETDDFFKTSADDVYAVGDVATFPMK 303
            V  ++ G I  D   +TS   VYA GDV +    
Sbjct: 261 GVKLDERGYIVVDSRQRTSVPGVYAAGDVTSGNFA 295

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* Length = 323

 Score = 48.7 bits (117), Expect = 2e-06
 Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 10/99 (10%)

Query: 215 ANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRT-----LEADIVVVGVGGRPLISLFKG 269
               ++ +  +V        D  VK+V +++ +T     L  + V + +G  P     K 
Sbjct: 201 KKPNVEFVLNSVVKEI--KGDKVVKQVVVENLKTGEIKELNVNGVFIEIGFDPPTDFAKS 258

Query: 270 QVAE--NKGGIETDDFFKTSADDVYAVGDVATFPMKLYR 306
              E    G I+ D++ +TS   V+A GD  +     +R
Sbjct: 259 NGIETDTNGYIKVDEWMRTSVPGVFAAGDCTS-AWLGFR 296

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Length = 671

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 46/340 (13%), Positives = 88/340 (25%), Gaps = 106/340 (31%)

Query: 2   AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTAR 61
           A +     ++G G +    A   A +G +                       LF +  + 
Sbjct: 370 AVQKKNLAVVGAGPAGLAFAINAAARGHQV---------------------TLF-DAHSE 407

Query: 62  LPG-FHV-CVGSGGERL--LPEWY----KEKGIELILSTEIVRADIASKTLLSATGLIFK 113
           + G F++     G E       +Y    +  G+ L L+  +    +              
Sbjct: 408 IGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVTADQLQ------------A 455

Query: 114 YQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYI 173
           +   ++A+G          ++G D   +    +       V   KA    K  ++G G I
Sbjct: 456 FDETILASGIVPRTP---PIDGIDHPKVLSYLD-------VLRDKAPVGNKVAIIGCGGI 505

Query: 174 GLELSAALKINNIDVSMVYPEPWC---------------------------------MPR 200
           G + +  L       S                                            
Sbjct: 506 GFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKAS 565

Query: 201 LFTADIAAFYEGYY----ANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVV 256
                +       +     ++G+K+I G          D  +  V   + + L  D VV+
Sbjct: 566 KPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKID---DDGLHVVINGETQVLAVDNVVI 622

Query: 257 GVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGD 296
             G  P  +L                    S   V+ +G 
Sbjct: 623 CAGQEPNRALA--------------QPLIDSGKTVHLIGG 648

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* Length = 311

 Score = 43.3 bits (103), Expect = 9e-05
 Identities = 20/103 (19%), Positives = 35/103 (33%), Gaps = 15/103 (14%)

Query: 215 ANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRT-----LEADIVVVGVGGRPLISLFKG 269
            N  I+ +   V      +A G V  + +K+  T     L      + VG     ++ K 
Sbjct: 190 NNDKIEFLTPYVVEEIKGDASG-VSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLKQ 248

Query: 270 QVAEN------KGGIETDDFFKTSADDVYAVGDVATFPMKLYR 306
           +           G I  D   KT+   ++A GD+        +
Sbjct: 249 EDNSMLCKCDEYGSIVVDFSMKTNVQGLFAAGDIRI---FAPK 288

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} Length = 315

 Score = 40.6 bits (96), Expect = 6e-04
 Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 11/74 (14%)

Query: 241 VKLKDG--RTLEADIVVVGVGGRPLISLFKGQVAE-----NKGG-IETDDFFKTSADDVY 292
           VKLKDG  R L    +   VG      + K   ++      +GG +  D   +TS   ++
Sbjct: 221 VKLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDSKFLCNMEEGGQVSVDLKMQTSVAGLF 280

Query: 293 AVGDVATFPMKLYR 306
           A GD+        +
Sbjct: 281 AAGDLRK---DAPK 291

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} Length = 335

 Score = 40.2 bits (95), Expect = 8e-04
 Identities = 22/99 (22%), Positives = 37/99 (37%), Gaps = 12/99 (12%)

Query: 215 ANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRT-----LEADIVVVGVGGRPLISLFKG 269
            N  I+ +     V    + D  V  ++++D  T     L    V V +G  P   L + 
Sbjct: 202 NNDKIRFLTNHTVVAV--DGDTTVTGLRVRDTNTGAETTLPVTGVFVAIGHEPRSGLVRE 259

Query: 270 QVAENKGG-IETD-DFFKTSADDVYAVGDVATFPMKLYR 306
            +  +  G +        TS   V+A GD+     + YR
Sbjct: 260 AIDVDPDGYVLVQGRTTSTSLPGVFAAGDLVD---RTYR 295

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	433
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	100.0
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	100.0
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	100.0
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	100.0
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	100.0
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	100.0
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	100.0
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	100.0
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	100.0
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	100.0
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	100.0
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	100.0
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	100.0
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	100.0
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	100.0
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	100.0
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	100.0
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	100.0
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	100.0
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	100.0
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	100.0
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	100.0
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	100.0
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	100.0
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	100.0
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	100.0
1ojt_A	482	Surface protein; redox-active center, glycolysis,	100.0
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	100.0
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	100.0
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	100.0
4dna_A	463	Probable glutathione reductase; structural genomic	100.0
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	100.0
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	100.0
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	100.0
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	100.0
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	100.0
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	100.0
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	100.0
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	100.0
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	100.0
1fec_A	490	Trypanothione reductase; redox-active center, oxid	100.0
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	100.0
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	100.0
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	100.0
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	100.0
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	100.0
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	100.0
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	100.0
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	100.0
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	100.0
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	100.0
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	100.0
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	100.0
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	100.0
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	100.0
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	100.0
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	100.0
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	100.0
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	100.0
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	100.0
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	100.0
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	100.0
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	100.0
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	100.0
4fk1_A	304	Putative thioredoxin reductase; structural genomic	100.0
3r9u_A	315	Thioredoxin reductase; structural genomics, center	100.0
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	100.0
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	100.0
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	100.0
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	100.0
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	100.0
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	100.0
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	100.0
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	100.0
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	100.0
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	100.0
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	100.0
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	100.0
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	100.0
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	100.0
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	100.0
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	99.98
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	99.98
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	99.97
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	99.97
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	99.97
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	99.97
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	99.96
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	99.96
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	99.95
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	99.95
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	99.93
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.9
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	99.83
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	99.73
2cul_A	232	Glucose-inhibited division protein A-related PROT	99.63
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	99.62
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	99.59
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	99.35
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	99.35
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	99.27
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	99.22
3dme_A	369	Conserved exported protein; structural genomics, P	99.22
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.19
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	99.16
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	99.15
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	99.11
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	99.11
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	99.06
2cul_A	232	Glucose-inhibited division protein A-related PROT	99.03
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	99.02
2bry_A	497	NEDD9 interacting protein with calponin homology a	99.01
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	99.01
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	98.97
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	98.92
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	98.92
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	98.91
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	98.89
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.89
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	98.88
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	98.88
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	98.87
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	98.86
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	98.86
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	98.86
3atr_A	453	Conserved archaeal protein; saturating double bond	98.86
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	98.86
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	98.84
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	98.84
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.83
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	98.82
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	98.81
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	98.78
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	98.78
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	98.77
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	98.77
2bry_A	497	NEDD9 interacting protein with calponin homology a	98.76
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	98.76
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	98.76
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	98.76
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	98.75
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	98.75
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	98.74
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	98.74
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	98.74
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	98.72
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.71
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	98.68
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	98.67
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	98.66
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	98.66
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	98.64
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.64
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	98.63
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	98.62
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	98.61
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.61
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	98.6
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	98.6
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	98.59
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	98.59
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	98.59
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	98.59
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.58
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	98.58
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	98.57
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	98.57
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	98.56
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	98.56
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	98.56
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	98.56
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.56
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	98.55
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	98.55
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	98.54
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	98.54
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	98.54
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	98.54
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	98.53
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	98.53
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	98.52
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	98.51
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.51
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	98.51
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.5
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.5
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	98.47
4fk1_A	304	Putative thioredoxin reductase; structural genomic	98.47
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	98.46
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.45
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	98.45
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.44
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	98.44
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	98.44
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.44
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.44
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	98.43
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	98.43
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	98.42
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	98.42
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.41
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	98.41
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.4
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.4
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	98.39
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	98.39
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.38
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	98.38
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	98.38
4hb9_A	412	Similarities with probable monooxygenase; flavin,	98.38
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.37
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	98.37
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	98.37
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.37
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	98.37
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.37
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.36
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.35
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	98.35
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	98.35
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.34
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.33
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.33
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.33
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	98.32
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	98.32
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.32
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	98.31
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.31
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	98.3
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	98.3
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.3
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	98.28
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	98.28
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	98.28
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.27
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.27
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.25
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	98.24
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	98.24
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	98.24
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.24
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	98.23
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	98.22
1fec_A	490	Trypanothione reductase; redox-active center, oxid	98.21
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.21
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.2
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.2
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	98.2
3atr_A	453	Conserved archaeal protein; saturating double bond	98.2
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.19
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	98.19
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.19
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.18
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.18
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.17
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	98.16
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	98.15
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	98.14
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	98.14
4hb9_A	412	Similarities with probable monooxygenase; flavin,	98.13
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.13
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.12
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	98.12
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	98.11
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.11
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	98.1
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	98.1
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	98.08
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	98.07
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	98.06
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.06
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	98.04
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	98.04
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	98.04
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	98.04
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	98.03
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	98.02
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	98.02
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	98.02
4dna_A	463	Probable glutathione reductase; structural genomic	98.01
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.01
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	98.0
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	97.99
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	97.98
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	97.95
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	97.95
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	97.94
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	97.93
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	97.93
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	97.92
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	97.91
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	97.9
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	97.87
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	97.85
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	97.84
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	97.83
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	97.82
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	97.82
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	97.8
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	97.8
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	97.8
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.78
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	97.77
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	97.77
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	97.75
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	97.75
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	97.72
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	97.72
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	97.71
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	97.69
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	97.68
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	97.68
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	97.67
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	97.64
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	97.63
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	97.62
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.61
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	97.58
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	97.56
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	97.55
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	97.53
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	97.53
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	97.52
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	97.5
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	97.48
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	97.4
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	97.35
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	97.3
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	97.28
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	97.22
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	97.21
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	97.2
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	97.18
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	97.16
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	97.1
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	97.02
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	96.99
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	96.97
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	96.95
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	96.94
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	96.92
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	96.92
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	96.86
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	96.85
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	96.83
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	96.82
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	96.76
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	96.75
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	96.74
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	96.72
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	96.71
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	96.65
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	96.48
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	96.47
4g65_A	461	TRK system potassium uptake protein TRKA; structur	96.38
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	95.94
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	95.9
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	95.87
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	95.63
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	95.54
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	95.47
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	95.45
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	95.27
1id1_A	153	Putative potassium channel protein; RCK domain, E.	95.2
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	95.13
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	94.8
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	94.78
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	94.77
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	94.76
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	94.74
3tl2_A	315	Malate dehydrogenase; center for structural genomi	94.37
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	94.27
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	94.13
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	94.07
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	94.06
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	94.01
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	93.89
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	93.86
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	93.86
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	93.81
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	93.79
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	93.78
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	93.67
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	93.6
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	93.45
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	93.45
3dme_A	369	Conserved exported protein; structural genomics, P	93.4
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	93.39
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	93.36
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	93.2
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	93.19
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	93.18
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	93.13
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	93.09
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	93.08
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	93.08
3c85_A	183	Putative glutathione-regulated potassium-efflux S	93.07
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	93.07
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	93.04
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	92.95
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	92.94
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	92.94
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	92.88
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	92.86
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	92.79
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	92.64
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	92.61
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	92.56
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	92.47
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	92.46
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	92.45
1id1_A	153	Putative potassium channel protein; RCK domain, E.	92.4
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	92.36
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	92.33
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	92.32
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	92.1
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	92.07
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	91.87
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	91.85
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	91.84
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	91.81
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	91.78
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	91.77
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	91.68
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	91.65
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	91.6
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	91.54
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	91.54
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	91.54
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	91.53
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	91.48
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	91.47
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	91.44
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	91.38
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	91.34
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	91.32
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	91.29
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	91.28
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	91.25
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	91.25
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	91.2
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	91.14
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	91.05
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	91.03
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	91.02
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	91.0
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	90.99
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	90.78
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	90.75
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	90.75
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	90.74
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	90.69
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	90.53
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	90.52
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	90.49
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	90.48
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	90.48
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	90.34
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	90.34
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	90.32
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	90.3
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	90.28
3qha_A	296	Putative oxidoreductase; seattle structural genomi	90.26
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	90.22
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	90.18
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	90.16
4ezb_A	317	Uncharacterized conserved protein; structural geno	90.15
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	89.75
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	89.7
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	89.69
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	89.57
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	89.5
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	89.48
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	89.46
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	89.34
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	89.24
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	89.22
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	89.2
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	89.07
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	89.06
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	89.0
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	88.98
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	88.96
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	88.95
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	88.91
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	88.85
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	88.84
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	88.81
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	88.69
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	88.56
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	88.56
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	88.53
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	88.51
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	88.42
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	88.4
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	88.35
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	88.21
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	88.19
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	88.17

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=100.00  E-value=2.6e-56  Score=431.06  Aligned_cols=400  Identities=31%  Similarity=0.499  Sum_probs=344.8

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHH
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK   82 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (433)
                      +++||||||||+||++||.+|++.|+ ..+|+|+|++ ..+|.++.+++.++......          ........+++.
T Consensus         8 ~~~~vvIIGaG~aGl~aA~~L~~~g~-~~~V~lie~~~~~~y~~~~l~~~~~~~~~~~----------~~~~~~~~~~~~   76 (415)
T 3lxd_A            8 ERADVVIVGAGHGGAQAAIALRQNGF-EGRVLVIGREPEIPYERPPLSKEYLAREKTF----------ERICIRPAQFWE   76 (415)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTC-CSCEEEEESSSSCCBCSGGGGTTTTTTSSCS----------GGGBSSCHHHHH
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCc-CCCEEEEecCCCCCcCcccCCHHHHcCCCCH----------HHhccCCHHHHH
Confidence            35899999999999999999999986 4679999999 78888887776555332111          011245678888


Q ss_pred             hCCcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCC
Q 013952           83 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKN  162 (433)
Q Consensus        83 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~  162 (433)
                      +.+++++.++.+..+++..+.|.+.+++++.||+||+|||+.|+.|+   ++|.+..+++++++..++..+...+.. .+
T Consensus        77 ~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~~~~~~---i~g~~~~~v~~~~~~~d~~~l~~~~~~-~~  152 (415)
T 3lxd_A           77 DKAVEMKLGAEVVSLDPAAHTVKLGDGSAIEYGKLIWATGGDPRRLS---CVGADLAGVHAVRTKEDADRLMAELDA-GA  152 (415)
T ss_dssp             HTTEEEEETCCEEEEETTTTEEEETTSCEEEEEEEEECCCEECCCCB---TTSSCCBTEECCCSHHHHHHHHHHHHT-TC
T ss_pred             HCCcEEEeCCEEEEEECCCCEEEECCCCEEEeeEEEEccCCccCCCC---CCCccccCEEEEcCHHHHHHHHHHhhh-cC
Confidence            99999999999999999999999999999999999999999998887   577777889999999999888877752 27


Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEE
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVK  242 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~  242 (433)
                      ++++|||+|++|+|+|..+.+.|.+|+++++.+.++++.+++++.+.+.+.+++.||++++++.|+++.. +++++..|.
T Consensus       153 ~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~-~~~~v~~v~  231 (415)
T 3lxd_A          153 KNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEG-DGTKVTGVR  231 (415)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEE-SSSBEEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchhhhhcCHHHHHHHHHHHHhCCCEEEECCEEEEEEe-cCCcEEEEE
Confidence            8999999999999999999999999999999999998778999999999999999999999999999987 456777899


Q ss_pred             eCCCcEEECCEEEEcccCccChhhhh-cccccCCCcEEeCCCCCCCCCCeEEcCcccccccccc-CcccccccHHHHHHH
Q 013952          243 LKDGRTLEADIVVVGVGGRPLISLFK-GQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLY-REMRRVEHVDHARKS  320 (433)
Q Consensus       243 ~~~g~~i~~d~vi~a~G~~p~~~~~~-~~~~~~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~-~~~~~~~~~~~A~~~  320 (433)
                      +.+|++++||.||+|+|++|+++++. .++..++ +|.||+++||+.|+|||+|||+..+...+ |.+.+.++|..|..|
T Consensus       232 l~dG~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~~-gi~vd~~~~t~~~~iyA~GD~a~~~~~~~~g~~~~~~~~~~A~~q  310 (415)
T 3lxd_A          232 MQDGSVIPADIVIVGIGIVPCVGALISAGASGGN-GVDVDEFCRTSLTDVYAIGDCAAHANDFADGAVIRLESVQNANDM  310 (415)
T ss_dssp             ESSSCEEECSEEEECSCCEESCHHHHHTTCCCSS-SEECCTTCBCSSTTEEECGGGEEEECGGGTTCEECCCSHHHHHHH
T ss_pred             eCCCCEEEcCEEEECCCCccChHHHHhCCCCcCC-CEEECCCCCcCCCCEEEEEeeeeecCcccCCcceeechHHHHHHH
Confidence            99999999999999999999998774 3566564 59999999999999999999999988666 777788899999999


Q ss_pred             HHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCCC--cEEEEcCCCccccCCcEEEEEEeCCEEEEEEEecC
Q 013952          321 AEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG--DTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESG  398 (433)
Q Consensus       321 g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~g~  398 (433)
                      |+.||+||++..     .+|..+|++|+.++++.++.+|...+  +.+..++..    ...|.++++++|+|+|+.++| 
T Consensus       311 g~~aa~~i~g~~-----~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~~~-  380 (415)
T 3lxd_A          311 ATAAAKDICGAP-----VPYKATPWFWSNQYDLKLQTVGLSTGHDNAVLRGDPA----TRSFSVVYLKGGKVVALDCVN-  380 (415)
T ss_dssp             HHHHHHHHTTCC-----CCCCCCCEEEEEETTEEEEEEECCTTCSEEEEEEEGG----GTEEEEEEEETTEEEEEEEES-
T ss_pred             HHHHHHHhcCCC-----CCCCCCCeeEeeeCCcEEEEEeCCCCCCEEEEEecCC----CCeEEEEEEECCEEEEEEEEC-
Confidence            999999999753     57889999999999999999998764  344555543    567999999999999999997 


Q ss_pred             ChHHHHHHHHHHHcCCCCCChhhhcccCCCccc
Q 013952          399 TPEENKAIAKVARVQPSVESLDVLKNEGLSFAS  431 (433)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (433)
                      ...+...+..+|+++.++ +.+.|.++.+++.+
T Consensus       381 ~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~~  412 (415)
T 3lxd_A          381 MVKDYVQGKKLVEARAQI-APEQLADAGVPLKE  412 (415)
T ss_dssp             CHHHHHHHHHHHHHTCCC-CHHHHTCTTSCGGG
T ss_pred             ChHHHHHHHHHHHCCCCC-CHHHhcCCCCChHH
Confidence            677788899999999888 47788998887654

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=100.00  E-value=3.4e-56  Score=428.92  Aligned_cols=394  Identities=25%  Similarity=0.398  Sum_probs=338.5

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      +||+|||||+||++||.+|++.|+ ..+|+|||++ ..+|.++.+++.++.......          .. ....+++.+.
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~~g~-~~~V~li~~~~~~~y~~~~l~~~~~~g~~~~~----------~~-~~~~~~~~~~   70 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRAEGF-EGRISLIGDEPHLPYDRPSLSKAVLDGSLERP----------PI-LAEADWYGEA   70 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-CSEEEEEECSSSSSBCSGGGGTHHHHTSSSSC----------CB-SSCTTHHHHT
T ss_pred             CCEEEEcccHHHHHHHHHHHccCc-CCeEEEEECCCCCCcCCccccHHHhCCCCCHH----------Hh-cCCHHHHHHC
Confidence            599999999999999999999986 5779999999 888988888775543321111          11 2346778889


Q ss_pred             CcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCCc
Q 013952           85 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGK  164 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  164 (433)
                      +++++.++++..+++..++|.+.+++++.||+||+|||+.|+.|+   +||.+..+++++++..++..+.+.+.  .+++
T Consensus        71 ~i~~~~~~~v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~p~~~~---ipG~~~~~v~~~~~~~d~~~l~~~~~--~~~~  145 (410)
T 3ef6_A           71 RIDMLTGPEVTALDVQTRTISLDDGTTLSADAIVIATGSRARTMA---LPGSQLPGVVTLRTYGDVQVLRDSWT--SATR  145 (410)
T ss_dssp             TCEEEESCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECCCC---CTTTTSTTEECCCSHHHHHHHHHHCC--TTCE
T ss_pred             CCEEEeCCEEEEEECCCCEEEECCCCEEECCEEEEccCCcccCCC---CCCccccceEEeccHHHHHHHHHHhc--cCCe
Confidence            999999999999999999999999999999999999999998887   67777788999999999888877554  4789


Q ss_pred             EEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC
Q 013952          165 AVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK  244 (433)
Q Consensus       165 v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~  244 (433)
                      ++|||+|++|+|+|..|.+.|.+|+++++.+.++++.+++++.+.+.+.+++.||++++++.|+++..  ++.+..|.+.
T Consensus       146 vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~--~~~~~~v~~~  223 (410)
T 3ef6_A          146 LLIVGGGLIGCEVATTARKLGLSVTILEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSG--EGQLEQVMAS  223 (410)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSHHHHCHHHHHHHHHHHHHHTCEEECSCCEEEEEC--SSSCCEEEET
T ss_pred             EEEECCCHHHHHHHHHHHhCCCeEEEEecCCccchhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEec--cCcEEEEEEC
Confidence            99999999999999999999999999999999887667999999999999999999999999999987  4466789999


Q ss_pred             CCcEEECCEEEEcccCccChhhhh-cccccCCCcEEeCCCCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHH
Q 013952          245 DGRTLEADIVVVGVGGRPLISLFK-GQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQ  323 (433)
Q Consensus       245 ~g~~i~~d~vi~a~G~~p~~~~~~-~~~~~~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~  323 (433)
                      +|+++++|.||+|+|++|++++++ .++..+ ++|.||+++||+.|+|||+|||+..+... +.+.+.++|..|..||+.
T Consensus       224 dg~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~-~gi~vd~~~~t~~~~IyA~GD~a~~~~~~-g~~~~~~~~~~A~~qg~~  301 (410)
T 3ef6_A          224 DGRSFVADSALICVGAEPADQLARQAGLACD-RGVIVDHCGATLAKGVFAVGDVASWPLRA-GGRRSLETYMNAQRQAAA  301 (410)
T ss_dssp             TSCEEECSEEEECSCEEECCHHHHHTTCCBS-SSEECCTTSBCSSTTEEECGGGEEEEBTT-SSEECCCCHHHHHHHHHH
T ss_pred             CCCEEEcCEEEEeeCCeecHHHHHhCCCccC-CeEEEccCeeECCCCEEEEEcceeccCCC-CCeeeechHHHHHHHHHH
Confidence            999999999999999999998774 456666 55999999999999999999999988765 666667899999999999


Q ss_pred             HHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCCC--cEEEEcCCCccccCCcEEEEEEeCCEEEEEEEecCChH
Q 013952          324 AVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG--DTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPE  401 (433)
Q Consensus       324 aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~g~~~~  401 (433)
                      ||+||++..     .+|..+|++|+.++++.+..+|...+  +.+..++..    ...|.++++++|+|+|++++| ...
T Consensus       302 aa~~i~g~~-----~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~g~~~~~-~~~  371 (410)
T 3ef6_A          302 VAAAILGKN-----VSAPQLPVSWTEIAGHRMQMAGDIEGPGDFVSRGMPG----SGAALLFRLQERRIQAVVAVD-APR  371 (410)
T ss_dssp             HHHHHTTCC-----CCCCBCCEEEEEETTEEEEEESCSSSSSEEEEESCTT----SSSEEEEEEETTEEEEEEEES-CHH
T ss_pred             HHHHHcCCC-----CCCCCCCeeEEEECCceEEEEcCCCCCCEEEEEeeCC----CCeEEEEEEECCEEEEEEEEC-ChH
Confidence            999999753     67888999999999999999998764  345555544    567899999999999999998 577


Q ss_pred             HHHHHHHHHHcCCCCCChhhhcccCCCccc
Q 013952          402 ENKAIAKVARVQPSVESLDVLKNEGLSFAS  431 (433)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (433)
                      +...+..+|+++.++ +.+.|.++.+++.+
T Consensus       372 ~~~~~~~~i~~~~~~-~~~~l~~~~~~l~~  400 (410)
T 3ef6_A          372 DFALATRLVEARAAI-EPARLADLSNSMRD  400 (410)
T ss_dssp             HHHHHHHHHHHTCBC-CHHHHHCTTSCGGG
T ss_pred             HHHHHHHHHhCCCCC-CHHHhcCCCCCHHH
Confidence            788899999999887 45788888887654

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=100.00  E-value=3e-55  Score=421.97  Aligned_cols=395  Identities=29%  Similarity=0.460  Sum_probs=342.2

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      +||+|||||+||++||.+|++.|+ ..+|+|||++ ..+|.++.+++.++......          ........+++.+.
T Consensus         2 k~vvIIGaG~aGl~aA~~L~~~g~-~~~V~lie~~~~~~y~~~~l~~~~l~~~~~~----------~~~~~~~~~~~~~~   70 (404)
T 3fg2_P            2 DTVLIAGAGHAGFQVAVSLRQAKY-PGRIALINDEKHLPYQRPPLSKAYLKSGGDP----------NSLMFRPEKFFQDQ   70 (404)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTC-CSCEEEECCSSSSSBCSGGGGTGGGGSCCCT----------TSSBSSCHHHHHHT
T ss_pred             CCEEEEcChHHHHHHHHHHHhhCc-CCCEEEEeCCCCCCCCCccCCHHHHCCCCCH----------HHccCCCHHHHHhC
Confidence            689999999999999999999997 3459999999 78898888876665432111          11134567888899


Q ss_pred             CcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCCc
Q 013952           85 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGK  164 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  164 (433)
                      +++++. .++..++++.+.+.+.+++++.||+||+|||+.|+.|+   +||.+..+++++++..++..+...+.  .+++
T Consensus        71 ~i~~~~-~~v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~p~~~~---i~g~~~~~v~~~~~~~d~~~l~~~~~--~~~~  144 (404)
T 3fg2_P           71 AIELIS-DRMVSIDREGRKLLLASGTAIEYGHLVLATGARNRMLD---VPNASLPDVLYLRTLDESEVLRQRMP--DKKH  144 (404)
T ss_dssp             TEEEEC-CCEEEEETTTTEEEESSSCEEECSEEEECCCEEECCCC---STTTTSTTEECCSSHHHHHHHHHHGG--GCSE
T ss_pred             CCEEEE-EEEEEEECCCCEEEECCCCEEECCEEEEeeCCCccCCC---CCCCCCCcEEEECCHHHHHHHHHHhh--cCCe
Confidence            999999 89999999999999999999999999999999998877   57777788999999999988877765  4789


Q ss_pred             EEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC
Q 013952          165 AVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK  244 (433)
Q Consensus       165 v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~  244 (433)
                      ++|||+|++|+|+|..+.+.|.+|+++++.+.+++..+++++.+.+.+.+++.||++++++.|.++.. +++++..|.+.
T Consensus       145 vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~-~~~~v~~V~~~  223 (404)
T 3fg2_P          145 VVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMARVVTPEISSYFHDRHSGAGIRMHYGVRATEIAA-EGDRVTGVVLS  223 (404)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEE-ETTEEEEEEET
T ss_pred             EEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcchhhccCHHHHHHHHHHHHhCCcEEEECCEEEEEEe-cCCcEEEEEeC
Confidence            99999999999999999999999999999999988778999999999999999999999999999987 45677789999


Q ss_pred             CCcEEECCEEEEcccCccChhhhh-cccccCCCcEEeCCCCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHH
Q 013952          245 DGRTLEADIVVVGVGGRPLISLFK-GQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQ  323 (433)
Q Consensus       245 ~g~~i~~d~vi~a~G~~p~~~~~~-~~~~~~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~  323 (433)
                      +|+++++|.||+|+|++|++++++ .++..++| |.||+++||+.|+|||+|||+..+...+|.+.+.+++..|..||+.
T Consensus       224 dG~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~~G-i~vd~~~~t~~~~iya~GD~a~~~~~~~g~~~~~~~~~~A~~qg~~  302 (404)
T 3fg2_P          224 DGNTLPCDLVVVGVGVIPNVEIAAAAGLPTAAG-IIVDQQLLTSDPHISAIGDCALFESVRFGETMRVESVQNATDQARC  302 (404)
T ss_dssp             TSCEEECSEEEECCCEEECCHHHHHTTCCBSSS-EEECTTSBCSSTTEEECGGGEEEEETTTTEEECCCSHHHHHHHHHH
T ss_pred             CCCEEEcCEEEECcCCccCHHHHHhCCCCCCCC-EEECCCcccCCCCEEEeecceeecCccCCceeeehHHHHHHHHHHH
Confidence            999999999999999999998774 45666654 9999999999999999999999988777877778899999999999


Q ss_pred             HHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCCC--cEEEEcCCCccccCCcEEEEEEeCCEEEEEEEecCChH
Q 013952          324 AVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG--DTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPE  401 (433)
Q Consensus       324 aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~g~~~~  401 (433)
                      ||+||++..     .+|..+|++|+.++++.++.+|...+  +.+..++..    ...|.++++++|+|+|+.++| ...
T Consensus       303 aa~~i~g~~-----~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~~~-~~~  372 (404)
T 3fg2_P          303 VAARLTGDA-----KPYDGYPWFWSDQGDDKLQIVGLTAGFDQVVIRGSVA----ERSFSAFCYKAGKLIGIESVN-RAA  372 (404)
T ss_dssp             HHHHTTTCC-----CCCCCCCEEEEEETTEEEEEEECCTTCCEEEEEEETT----TTEEEEEEEETTEEEEEEEES-CHH
T ss_pred             HHHHhCCCC-----CCCCCCCceEeEECCcEEEEEeCCCCCCEEEEEecCC----CCcEEEEEEECCEEEEEEEeC-CHH
Confidence            999999753     57889999999999999999998754  345555544    567999999999999999997 668


Q ss_pred             HHHHHHHHHHcCCCCCChhhhcccCCCcc
Q 013952          402 ENKAIAKVARVQPSVESLDVLKNEGLSFA  430 (433)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (433)
                      +...+..+|+++.++ +.+.|.++.+++.
T Consensus       373 ~~~~~~~~~~~~~~~-~~~~l~~~~~~~~  400 (404)
T 3fg2_P          373 DHVFGRKILPLDKSV-TPEQAADLSFDLK  400 (404)
T ss_dssp             HHHHHHHHTTTTCCC-CHHHHHCTTSCHH
T ss_pred             HHHHHHHHHHcCCCC-CHHHhcCCCCChH
Confidence            889999999999888 4678888888764

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=100.00  E-value=3.5e-55  Score=424.26  Aligned_cols=400  Identities=18%  Similarity=0.224  Sum_probs=313.8

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      .+|||||||+||++||.+|++.|. +.+|+|||++ ..+|.+|+++..+.....     ....    .......+++++.
T Consensus         1 PKVvIIG~G~AGl~aA~~l~~~g~-~~~V~lie~~~~~~~~~~~l~~~~~~~~~-----~~~~----~~~~~~~~~~~~~   70 (437)
T 4eqs_A            1 PKIVVVGAVAGGATCASQIRRLDK-ESDIIIFEKDRDMSFANCALPYVIGEVVE-----DRRY----ALAYTPEKFYDRK   70 (437)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHCS-SSCEEEEESSSCSSBCGGGHHHHHTTSSC-----CGGG----TBCCCHHHHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCC-CCcEEEEeCCCCCCCCcchhHHHHcCCcc-----chhh----hhhcCHHHHHHhc
Confidence            379999999999999999999985 4669999999 777777766532211100     0000    0112335677888


Q ss_pred             CcEEEeCceEEEEECCCCEEEeCCC-----cEEecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHh
Q 013952           85 GIELILSTEIVRADIASKTLLSATG-----LIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKA  159 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~~v~~~~~-----~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~  159 (433)
                      +++++.+++|..|+++.+.+.+.++     .++.||+||||||++|+.|+   +++   .+++..++..++..+.+.+..
T Consensus        71 ~i~~~~~~~V~~id~~~~~~~~~~~~~~~~~~~~yd~lVIATGs~p~~p~---i~g---~~~~~~~~~~~~~~l~~~~~~  144 (437)
T 4eqs_A           71 QITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSLG---FES---DITFTLRNLEDTDAIDQFIKA  144 (437)
T ss_dssp             CCEEEETEEEEEEETTTTEEEEEETTTTEEEEEECSEEEECCCEEECCCC---CCC---TTEECCSSHHHHHHHHHHHHH
T ss_pred             CCEEEeCCeEEEEEccCcEEEEEeccCCceEEEEcCEEEECCCCcccccc---ccC---ceEEeeccHHHHHHHHHhhhc
Confidence            9999999999999999988765332     36899999999999988765   454   678888999999998888776


Q ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEE
Q 013952          160 KKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVK  239 (433)
Q Consensus       160 ~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~  239 (433)
                      .++++++|||+|++|+|+|..+.+.|.+|+++++.+++++. +++++.+.+.+.++++||+++++++|++++.      .
T Consensus       145 ~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~~-~d~~~~~~~~~~l~~~gV~i~~~~~v~~~~~------~  217 (437)
T 4eqs_A          145 NQVDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKL-MDADMNQPILDELDKREIPYRLNEEINAING------N  217 (437)
T ss_dssp             HTCCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCSTT-SCGGGGHHHHHHHHHTTCCEEESCCEEEEET------T
T ss_pred             cCCcEEEEECCccchhhhHHHHHhcCCcceeeeeecccccc-ccchhHHHHHHHhhccceEEEeccEEEEecC------C
Confidence            67899999999999999999999999999999999999886 7999999999999999999999999999875      2


Q ss_pred             EEEeCCCcEEECCEEEEcccCccChhhhh-ccccc-CCCcEEeCCCCCCCCCCeEEcCccccccccccCcccccccHHHH
Q 013952          240 EVKLKDGRTLEADIVVVGVGGRPLISLFK-GQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHA  317 (433)
Q Consensus       240 ~v~~~~g~~i~~d~vi~a~G~~p~~~~~~-~~~~~-~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A  317 (433)
                      .+.+++|+++++|.|++|+|++||+++++ .++.. ++|+|.||++|||++|||||+|||++.++...+.+.+.+++..|
T Consensus       218 ~v~~~~g~~~~~D~vl~a~G~~Pn~~~~~~~gl~~~~~G~I~vd~~~~Ts~p~IyA~GDva~~~~~~~~~~~~~~~a~~A  297 (437)
T 4eqs_A          218 EITFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPASVPLAWGA  297 (437)
T ss_dssp             EEEETTSCEEECSEEEECCCEEESCGGGTTSSCCCCTTSCEECCTTCBCSSTTEEECGGGEEEEBSSSSSEECCCSHHHH
T ss_pred             eeeecCCeEEeeeeEEEEeceecCcHHHHhhhhhhccCCcEecCCCccCCCCCEEEEEEccCcccccCCccccchhHHHH
Confidence            57889999999999999999999998875 45766 57889999999999999999999999998888877777899999


Q ss_pred             HHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCCCcE---------EEEcCCCc--cccCCcEEEEEE-
Q 013952          318 RKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDT---------VLFGDNDL--ASATHKFGTYWI-  385 (433)
Q Consensus       318 ~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~~---------~~~~~~~~--~~~~~~~~~~~~-  385 (433)
                      .+||+++|+||++....   ....+.+..+..+.+..+..+|+++.+.         +.......  ...+.+|.|+++ 
T Consensus       298 ~~~g~~~a~ni~g~~~~---~~~~~~~~~~~~~~~p~ia~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d  374 (437)
T 4eqs_A          298 HRAASIVAEQIAGNDTI---EFKGFLGNNIVKFFDYTFASVGVKPNELKQFDYKMVEVTQGAHANYYPGNSPLHLRVYYD  374 (437)
T ss_dssp             HHHHHHHHHHHHSCTTC---CCCCBCCCEEEEETTEEEEEEESCGGGGGGSCEEEEEEEEESSCTTSSSCCEEEEEEEEE
T ss_pred             HHHHHHHHHHHcCCCCc---ccccceeEEeeeeccceEEEeeCCHHHHHhCCceEEEEecCCchhhcCCCCcEEEEEEEE
Confidence            99999999999986431   1122333333344555555668775321         11111111  123567888887 


Q ss_pred             -eCCEEEEEEEecCC-hHH-HHHHHHHHHcCCCCCChhhhccc-CCCccc
Q 013952          386 -KDGKVVGVFLESGT-PEE-NKAIAKVARVQPSVESLDVLKNE-GLSFAS  431 (433)
Q Consensus       386 -~~~~l~G~~~~g~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  431 (433)
                       ++++|||+|++|++ ++| |+.++.||++++|++||..+.-. -++|.+
T Consensus       375 ~~~~~ilGa~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~yhP~~s~  424 (437)
T 4eqs_A          375 TSNRQILRAAAVGKEGADKRIDVLSMAMMNQLTVDELTEFEVAFAPPYSH  424 (437)
T ss_dssp             TTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBGGGGGGCCCCCCTTTCC
T ss_pred             CCCCEEEEEEEECcCCHHHHHHHHHHHHHcCCcHHHHhcCccccCCCCCc
Confidence             57999999999985 777 59999999999999977765433 244443

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=100.00  E-value=9.9e-54  Score=413.95  Aligned_cols=401  Identities=26%  Similarity=0.425  Sum_probs=327.9

Q ss_pred             CCCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHh
Q 013952            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPE   79 (433)
Q Consensus         1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (433)
                      |++ .+||+|||||+||+++|..|++.|+ ..+|+|||++ ..+|.++.+++.++.......          .......+
T Consensus         1 M~~-~~~vvIIGgG~aGl~aA~~l~~~g~-~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~----------~~~~~~~~   68 (431)
T 1q1r_A            1 MNA-NDNVVIVGTGLAGVEVAFGLRASGW-EGNIRLVGDATVIPHHLPPLSKAYLAGKATAE----------SLYLRTPD   68 (431)
T ss_dssp             -CC-SCEEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSCCSCCBCSGGGGTTTTTTCSCSG----------GGBSSCHH
T ss_pred             CCC-CCcEEEEcCHHHHHHHHHHHHccCc-CCCEEEEECCCCCCCcCCCCcHHHhCCCCChH----------HhcccCHH
Confidence            543 5899999999999999999999986 3469999999 778877766665543221100          01123467


Q ss_pred             HHHhCCcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCCCCCCCCCC---EEEecCHHHHHHHHHH
Q 013952           80 WYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKN---IFYLREIDDADKLVEA  156 (433)
Q Consensus        80 ~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~---v~~~~~~~~~~~~~~~  156 (433)
                      ++++.+++++.++.|..++++.++|.+.+++++.||+||+|||++|+.|+   ++|.+..+   ++++.+..++..+.+.
T Consensus        69 ~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~p~~~~---i~G~~~~~~~~v~~~~~~~d~~~l~~~  145 (431)
T 1q1r_A           69 AYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPRPLP---VASGAVGKANNFRYLRTLEDAECIRRQ  145 (431)
T ss_dssp             HHHHTTEEEECSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECCCG---GGTTHHHHSTTEEESSSHHHHHHHHHT
T ss_pred             HHHhCCCEEEeCCEEEEEECCCCEEEECCCCEEECCEEEEcCCCCccCCC---CCCcccCCCceEEEECCHHHHHHHHHH
Confidence            78889999999999999999889999988889999999999999998887   56654334   8888898888777665


Q ss_pred             HHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEec-CC
Q 013952          157 IKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN-AD  235 (433)
Q Consensus       157 ~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~-~~  235 (433)
                      +.  .+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++..+++++.+.+.+.+++.||+++++++|.++..+ ++
T Consensus       146 l~--~~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~  223 (431)
T 1q1r_A          146 LI--ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQ  223 (431)
T ss_dssp             CC--TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEECTTT
T ss_pred             hh--cCCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccccchhhHHHHHHHHHHHHhCCeEEEeCCEEEEEEeccCC
Confidence            43  4789999999999999999999999999999999998887789999999999999999999999999999852 24


Q ss_pred             CcEEEEEeCCCcEEECCEEEEcccCccChhhhh-cccccCCCcEEeCCCCCCCCCCeEEcCccccccccccCcccccccH
Q 013952          236 GEVKEVKLKDGRTLEADIVVVGVGGRPLISLFK-GQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHV  314 (433)
Q Consensus       236 g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~~-~~~~~~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~  314 (433)
                      +++..+.+.+|+++++|.||+|+|++|++++++ .++..++ +|.||+++||+.|+|||+|||+..+.+.+|.+.+.+++
T Consensus       224 ~~v~~v~~~~G~~i~~D~Vv~a~G~~p~~~l~~~~gl~~~~-gi~Vd~~~~ts~~~IyA~GD~~~~~~~~~g~~~~~~~~  302 (431)
T 1q1r_A          224 QKVTAVLCEDGTRLPADLVIAGIGLIPNCELASAAGLQVDN-GIVINEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESV  302 (431)
T ss_dssp             CCEEEEEETTSCEEECSEEEECCCEEECCHHHHHTTCCBSS-SEECCTTSBCSSTTEEECGGGEEEEETTTTEEEECCSH
T ss_pred             CcEEEEEeCCCCEEEcCEEEECCCCCcCcchhhccCCCCCC-CEEECCCcccCCCCEEEEEeEEEEccccCCceEeeCHH
Confidence            666688899999999999999999999998774 3566654 59999999999999999999999887666766677899


Q ss_pred             HHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCCCc--EEEEcCCCccccCCcEEEEEEeCCEEEE
Q 013952          315 DHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGD--TVLFGDNDLASATHKFGTYWIKDGKVVG  392 (433)
Q Consensus       315 ~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~G  392 (433)
                      ..|..||+.+|.||.+..     .+|..+|++|+..++..+..+|.++..  .+..++..    ...|.+++.++|+|+|
T Consensus       303 ~~A~~qg~~aa~~i~g~~-----~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~G  373 (431)
T 1q1r_A          303 PNALEQARKIAAILCGKV-----PRDEAAPWFWSDQYEIGLKMVGLSEGYDRIIVRGSLA----QPDFSVFYLQGDRVLA  373 (431)
T ss_dssp             HHHHHHHHHHHHHHTTCC-----CCCCCCCEEEEEETTEEEEEEECCTTCSEEEEEEETT----TTEEEEEEEETTEEEE
T ss_pred             HHHHHHHHHHHHHhcCCC-----CCCCCCCeEEEEECCceEEEEeCCCCCCEEEEEccCC----CCeEEEEEEeCCEEEE
Confidence            999999999999999753     467789999999999888888877642  33344322    4567888889999999


Q ss_pred             EEEecCChHHHHHHHHHHHcCCCCCChhhhcccCCCcc
Q 013952          393 VFLESGTPEENKAIAKVARVQPSVESLDVLKNEGLSFA  430 (433)
Q Consensus       393 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (433)
                      ++++|+. .+...+..+|..+.++ +...|.++.+++.
T Consensus       374 ~~~~g~~-~~~~~~~~~i~~~~~~-~~~~l~~~~~~~~  409 (431)
T 1q1r_A          374 VDTVNRP-VEFNQSKQIITDRLPV-EPNLLGDESVPLK  409 (431)
T ss_dssp             EEEESCH-HHHHHHHHHHHTTCCC-CHHHHTCTTSCHH
T ss_pred             EEEECCh-HHHHHHHHHHHCCCCC-CHHHhhCCCCCHH
Confidence            9999854 5566677788888777 4567888877764

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=100.00  E-value=1.8e-53  Score=409.48  Aligned_cols=390  Identities=26%  Similarity=0.432  Sum_probs=319.8

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHh
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   83 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (433)
                      ++||+|||||++|+++|.+|++.|. ..+|+|+|++ ..+|.++.+++.++.......             ..+. ++++
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~g~-~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~-~~~~   71 (408)
T 2gqw_A            7 KAPVVVLGAGLASVSFVAELRQAGY-QGLITVVGDEAERPYDRPPLSKDFMAHGDAEK-------------IRLD-CKRA   71 (408)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHHHTC-CSCEEEEESSCSCCBCSGGGGTHHHHHCCGGG-------------SBCC-CTTS
T ss_pred             CCcEEEECChHHHHHHHHHHHccCC-CCeEEEEECCCCCcccCCCCCHHHhCCCchhh-------------hhHH-HHHH
Confidence            5899999999999999999999986 3569999999 677877766654442211000             0111 4567


Q ss_pred             CCcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCCC-CCCCCCCEEEecCHHHHHHHHHHHHhcCC
Q 013952           84 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGV-EGADAKNIFYLREIDDADKLVEAIKAKKN  162 (433)
Q Consensus        84 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~-~g~~~~~v~~~~~~~~~~~~~~~~~~~~~  162 (433)
                      .+++++.+++|..++++.++|.+.+++++.||+||+|||++|+.|+   + +|.+ ++++++.+..++..+.+.+.  .+
T Consensus        72 ~~v~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~---i~~G~~-~~v~~~~~~~~~~~l~~~~~--~~  145 (408)
T 2gqw_A           72 PEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRALP---TLQGAT-MPVHTLRTLEDARRIQAGLR--PQ  145 (408)
T ss_dssp             CSCEEEETCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECCCG---GGTTCS-SCEEECCSHHHHHHHHTTCC--TT
T ss_pred             CCCEEEcCCEEEEEECCCCEEEECCCCEEECCEEEECCCCCCCCCC---ccCCCC-CcEEEECCHHHHHHHHHHhh--cC
Confidence            8999999988999999989999988889999999999999998877   5 6766 78999899988877765443  47


Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEE
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVK  242 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~  242 (433)
                      ++++|||+|++|+|+|..|.+.|.+|+++++.+.++++.+++++.+.+.+.+++.||+++++++|.+++   ++   .|.
T Consensus       146 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~---~~---~v~  219 (408)
T 2gqw_A          146 SRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSV---DG---VVL  219 (408)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHHTTCEEEESCCEEEEE---TT---EEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcccccccCHHHHHHHHHHHHHcCcEEEeCCEEEEEE---CC---EEE
Confidence            899999999999999999999999999999999998866899999999999999999999999999997   23   577


Q ss_pred             eCCCcEEECCEEEEcccCccChhhhh-cccccCCCcEEeCCCCCCCCCCeEEcCccccccccccCcccccccHHHHHHHH
Q 013952          243 LKDGRTLEADIVVVGVGGRPLISLFK-GQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSA  321 (433)
Q Consensus       243 ~~~g~~i~~d~vi~a~G~~p~~~~~~-~~~~~~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g  321 (433)
                      +.+|+++++|.||+|+|++|++++++ .++..++| |.||+++||+.|+|||+|||+..+.+.+|.+.+.+++..|..||
T Consensus       220 ~~~g~~i~~D~vi~a~G~~p~~~l~~~~gl~~~~g-i~Vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g  298 (408)
T 2gqw_A          220 LDDGTRIAADMVVVGIGVLANDALARAAGLACDDG-IFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQG  298 (408)
T ss_dssp             ETTSCEEECSEEEECSCEEECCHHHHHHTCCBSSS-EECCTTCBCSSTTEEECGGGEEEEETTTTEEECCCCHHHHHHHH
T ss_pred             ECCCCEEEcCEEEECcCCCccHHHHHhCCCCCCCC-EEECCCCccCCCCEEEEEEEEEecCccCCceeeccHHHHHHHHH
Confidence            88998999999999999999998774 35666654 99999999999999999999998876566665667899999999


Q ss_pred             HHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCC-CcEEEEcCCCccccCCcEEEEEEeCCEEEEEEEecCCh
Q 013952          322 EQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV-GDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTP  400 (433)
Q Consensus       322 ~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~g~~~  400 (433)
                      +.+|.||.+...    ..|..+|++|+..++..+..+|... ++.+..++..  .....|.+++.++|+|+|++++|+. 
T Consensus       299 ~~aa~~i~g~~~----~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~G~~~~g~~-  371 (408)
T 2gqw_A          299 IAVARHLVDPTA----PGYAELPWYWSDQGALRIQVAGLASGDEEIVRGEVS--LDAPKFTLIELQKGRIVGATCVNNA-  371 (408)
T ss_dssp             HHHHHHHHCTTS----CCCCCCCEEEEEETTEEEEEEECSCCSEEEEESCCC--SSSCCEEEEEEETTEEEEEEEESCH-
T ss_pred             HHHHHHhcCCCC----CcCCCCCeEEEEECCceEEEECCCCCCEEEEEccCC--CCCCeEEEEEEeCCEEEEEEEECCh-
Confidence            999999997531    2778899999999999888889721 2233333321  1135688888899999999999854 


Q ss_pred             HHHHHHHHHHHcCCCCCChhhhcccCCCcc
Q 013952          401 EENKAIAKVARVQPSVESLDVLKNEGLSFA  430 (433)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (433)
                      .++..+..+|+++.++. ...|.++.+++.
T Consensus       372 ~~~~~~~~~i~~~~~~~-~~~l~~~~~~~~  400 (408)
T 2gqw_A          372 RDFAPLRRLLAVGAKPD-RAALADPATDLR  400 (408)
T ss_dssp             HHHHHHHHHHHTTCCCC-HHHHHCTTCCHH
T ss_pred             HHHHHHHHHHHCCCCCC-hHHhcCCCCCHH
Confidence            56899999999999884 457788877654

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=100.00  E-value=1.3e-53  Score=406.04  Aligned_cols=362  Identities=27%  Similarity=0.362  Sum_probs=305.1

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHH
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK   82 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (433)
                      ++.+|+|||||+||++||.+|++.+.+   |+|||++ ..+|.++.+++.+.......           .......++++
T Consensus         8 ~~~~~vIvGgG~AGl~aA~~L~~~~~~---itlie~~~~~~y~~~~l~~~l~g~~~~~-----------~l~~~~~~~~~   73 (385)
T 3klj_A            8 KSTKILILGAGPAGFSAAKAALGKCDD---ITMINSEKYLPYYRPRLNEIIAKNKSID-----------DILIKKNDWYE   73 (385)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHTTTCSC---EEEECSSSSCCBCGGGHHHHHHSCCCGG-----------GTBSSCHHHHH
T ss_pred             CCCCEEEEcCcHHHHHHHHHHhCCCCE---EEEEECCCCCCcccChhhHHHcCCCCHH-----------HccCCCHHHHH
Confidence            357999999999999999999554544   9999999 77888888776432211111           11346788899


Q ss_pred             hCCcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCC
Q 013952           83 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKN  162 (433)
Q Consensus        83 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~  162 (433)
                      +.+++++.+++|..++++.++|++.+++++.||+||||||++|+.|+   +||.+  +++++++..++..+.+.+..  +
T Consensus        74 ~~~i~~~~~~~V~~id~~~~~v~~~~g~~~~yd~lvlAtG~~p~~p~---i~G~~--~v~~~~~~~d~~~l~~~l~~--~  146 (385)
T 3klj_A           74 KNNIKVITSEFATSIDPNNKLVTLKSGEKIKYEKLIIASGSIANKIK---VPHAD--EIFSLYSYDDALKIKDECKN--K  146 (385)
T ss_dssp             HTTCEEECSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECCCC---CTTCS--CEECCSSHHHHHHHHHHHHH--H
T ss_pred             HCCCEEEeCCEEEEEECCCCEEEECCCCEEECCEEEEecCCCcCCCC---CCCCC--CeEEeCCHHHHHHHHHHhhc--C
Confidence            99999999999999999999999999999999999999999998887   57765  89999999999998887763  6


Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEE
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVK  242 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~  242 (433)
                      ++++|||+|++|+|+|..|.+.|.+|+++++.+.++++.+++++.+.+.+.+++.||++++++.+.++            
T Consensus       147 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i------------  214 (385)
T 3klj_A          147 GKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPLERQLDRDGGLFLKDKLDRLGIKIYTNSNFEEM------------  214 (385)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTTSCHHHHHHHHHHHHTTTCEEECSCCGGGC------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchhhcCHHHHHHHHHHHHhCCCEEEeCCEEEEc------------
Confidence            89999999999999999999999999999999999988789999999999999999999999888665            


Q ss_pred             eCCCcEEECCEEEEcccCccChhhhhc-ccccCCCcEEeCCCCCCCCCCeEEcCccccccccccCcccccccHHHHHHHH
Q 013952          243 LKDGRTLEADIVVVGVGGRPLISLFKG-QVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSA  321 (433)
Q Consensus       243 ~~~g~~i~~d~vi~a~G~~p~~~~~~~-~~~~~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g  321 (433)
                         |+++++|.||+|+|++|++++++. ++..++ +|.||++|||+.|+|||+|||+..+...      ..++..|..||
T Consensus       215 ---g~~~~~D~vv~a~G~~p~~~~~~~~gl~~~~-gi~vd~~~~t~~~~IyA~GD~a~~~~~~------~~~~~~A~~qg  284 (385)
T 3klj_A          215 ---GDLIRSSCVITAVGVKPNLDFIKDTEIASKR-GILVNDHMETSIKDIYACGDVAEFYGKN------PGLINIANKQG  284 (385)
T ss_dssp             ---HHHHHHSEEEECCCEEECCGGGTTSCCCBSS-SEEECTTCBCSSTTEEECGGGEEETTBC------CCCHHHHHHHH
T ss_pred             ---CeEEecCeEEECcCcccChhhhhhcCCCcCC-CEEECCCcccCCCCEEEEEeeEecCCCc------ccHHHHHHHHH
Confidence               457899999999999999988754 565554 4999999999999999999999876431      26789999999


Q ss_pred             HHHHHHHhccCCCCCccCCCC-CCeEEEeecccceEEecCCCCc---EEEEcCCCccccCCcEEEEEEeCCEEEEEEEec
Q 013952          322 EQAVKTIMATEGGKTVTGYDY-LPYFYSRAFDLSWQFYGDNVGD---TVLFGDNDLASATHKFGTYWIKDGKVVGVFLES  397 (433)
Q Consensus       322 ~~aa~~i~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~g  397 (433)
                      +.||.||++..     .+|.. +|++|+.+++..+..+|.++++   .+.. +.    ....|.++++++|+|+|++++|
T Consensus       285 ~~aa~~i~g~~-----~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~l~g~~~~g  354 (385)
T 3klj_A          285 EVAGLNACGED-----ASYSEIIPSPILKVSGISIISCGDIENNKPSKVFR-ST----QEDKYIVCMLKENKIDAAAVIG  354 (385)
T ss_dssp             HHHHHHHTTCC-----CCCCCCCCCCEEEETTEEEEEESCCTTCCCSEEEE-EE----CSSCEEEEEEETTEEEEEEEES
T ss_pred             HHHHHHhcCCC-----cCCCCCCCcEEEEeCCCcEEEEcCCCCCCCeEEEE-EC----CCCeEEEEEEECCEEEEEEEEC
Confidence            99999999754     45555 6999999999999999987643   2322 22    2568999999999999999998


Q ss_pred             CChHHHHHHHHHHHcCCCCCCh
Q 013952          398 GTPEENKAIAKVARVQPSVESL  419 (433)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~  419 (433)
                      +. .....+..+|+++.+++++
T Consensus       355 ~~-~~~~~~~~~i~~~~~~~~~  375 (385)
T 3klj_A          355 DV-SLGTKLKKAIDSSKSFDNI  375 (385)
T ss_dssp             CH-HHHHHHHHHHHTTCBCSCC
T ss_pred             Cc-HHHHHHHHHHHcCCCcccc
Confidence            55 4445889999999999876

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=100.00  E-value=4.9e-53  Score=412.30  Aligned_cols=400  Identities=17%  Similarity=0.221  Sum_probs=307.8

Q ss_pred             CeEEEECCCHHHHHHHHHHHHc--CCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHH
Q 013952            6 FKYVILGGGVSAGYAAREFAKQ--GVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK   82 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~--g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (433)
                      +||+|||||+||++||.+|++.  +.+   |+|||++ ...|.++.+.. ++.. .....        ........+++.
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~---V~vie~~~~~g~~~~~~~~-~~~~-~~~~~--------~~~~~~~~~~~~   69 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAE---ISLIDKQATVGYLSGGLSA-YFNH-TINEL--------HEARYITEEELR   69 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSE---EEEECSSSCCSSCCC--------------------------CCCCHHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCc---EEEEECCCCCcccCccchh-hhcC-CCCCH--------HHhhcCCHHHHH
Confidence            5999999999999999999998  554   9999999 55554332221 1100 00000        111234677888


Q ss_pred             hCCcEEEeCceEEEEECCCCEEEeC---CCcEEecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHh
Q 013952           83 EKGIELILSTEIVRADIASKTLLSA---TGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKA  159 (433)
Q Consensus        83 ~~~v~~~~~~~v~~i~~~~~~v~~~---~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~  159 (433)
                      +.+++++.+++|..++++.+.+.+.   ++.++.||++|+|||++|..|+   ++|.+..++++++++.+...+.+... 
T Consensus        70 ~~gi~~~~~~~V~~id~~~~~v~v~~~~~~~~~~~d~lviAtG~~p~~p~---i~g~~~~~v~~~~~~~~~~~~~~~~~-  145 (452)
T 3oc4_A           70 RQKIQLLLNREVVAMDVENQLIAWTRKEEQQWYSYDKLILATGASQFSTQ---IRGSQTEKLLKYKFLSGALAAVPLLE-  145 (452)
T ss_dssp             HTTEEEECSCEEEEEETTTTEEEEEETTEEEEEECSEEEECCCCCBCCCC---CBTTTCTTEEEGGGCC----CCHHHH-
T ss_pred             HCCCEEEECCEEEEEECCCCEEEEEecCceEEEEcCEEEECCCcccCCCC---CCCCCCCCEEEeCCHHHHHHHHHHHh-
Confidence            9999999999999999999888663   4567999999999999998887   67777788998887777666555444 


Q ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEE
Q 013952          160 KKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVK  239 (433)
Q Consensus       160 ~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~  239 (433)
                       .+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++..+++++.+.+.+.+++.||+++++++|++++. .++.+ 
T Consensus       146 -~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~-~~~~v-  222 (452)
T 3oc4_A          146 -NSQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLPKYFDKEMVAEVQKSLEKQAVIFHFEETVLGIEE-TANGI-  222 (452)
T ss_dssp             -TCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTCCHHHHHHHHHHHHTTTEEEEETCCEEEEEE-CSSCE-
T ss_pred             -cCCEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccccccCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEc-cCCeE-
Confidence             579999999999999999999999999999999999998768999999999999999999999999999986 34454 


Q ss_pred             EEEeCCCcEEECCEEEEcccCccChhhhhccccc-CCCcEEeCCCCCCCCCCeEEcCccccccccccCcccccccHHHHH
Q 013952          240 EVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHAR  318 (433)
Q Consensus       240 ~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~  318 (433)
                      .+.+.++ ++++|.||+|+|++|+++++...+.. ++|+|.||++|||+.|+|||+|||++.+....+.+.+.+++..|.
T Consensus       223 ~v~~~~g-~i~aD~Vv~A~G~~p~~~~l~~~~~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~  301 (452)
T 3oc4_A          223 VLETSEQ-EISCDSGIFALNLHPQLAYLDKKIQRNLDQTIAVDAYLQTSVPNVFAIGDCISVMNEPVAETFYAPLVNNAV  301 (452)
T ss_dssp             EEEESSC-EEEESEEEECSCCBCCCSSCCTTSCBCTTSCBCCCTTCBCSSTTEEECGGGBCEEEGGGTEEECCCCHHHHH
T ss_pred             EEEECCC-EEEeCEEEECcCCCCChHHHHhhhccCCCCCEEECcCccCCCCCEEEEEeeEEeccccCCceeecchHHHHH
Confidence            7788777 89999999999999999988665555 578899999999999999999999998776666555567899999


Q ss_pred             HHHHHHHHHHhccCCCCCccCCC-CCCeEEEeecccceEEecCCCCc------EEEEcCCC-----ccccCCcEEEEEE-
Q 013952          319 KSAEQAVKTIMATEGGKTVTGYD-YLPYFYSRAFDLSWQFYGDNVGD------TVLFGDND-----LASATHKFGTYWI-  385 (433)
Q Consensus       319 ~~g~~aa~~i~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~g~~~~~------~~~~~~~~-----~~~~~~~~~~~~~-  385 (433)
                      .||++||.||++...     .+. ..+...+.+|+..+..+|+++.+      .+.....+     ....+.+|.|+++ 
T Consensus       302 ~~g~~aa~~i~g~~~-----~~~~~~~~~~~~~~~~~~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~kli~~  376 (452)
T 3oc4_A          302 RTGLVVANNLEEKTH-----RFIGSLRTMGTKVGDYYLASTGLTETEGLFFPQTLASIIVRQPAPPLQHGTEILGKLIYD  376 (452)
T ss_dssp             HHHHHHTTSSSSCCC-----CCCCCCCCEEEEETTEEEEEEECCSGGGGGSSSCEEEEEEEEECTTTTCSCEEEEEEEEE
T ss_pred             HHHHHHHHHhcCCCc-----cCCCccccEEEEEcCeeEEEecCCHHHHHHCCCceEEEEEecCCccCCCCCeEEEEEEEE
Confidence            999999999987532     222 12234445566677777887632      12211111     1123568899888 


Q ss_pred             -eCCEEEEEEEecC-ChHHH-HHHHHHHHcCCCCCChhhh-cccCCCccc
Q 013952          386 -KDGKVVGVFLESG-TPEEN-KAIAKVARVQPSVESLDVL-KNEGLSFAS  431 (433)
Q Consensus       386 -~~~~l~G~~~~g~-~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  431 (433)
                       ++++|||+|++|+ +++|+ +.++.||++++|++||..+ .-+.++|++
T Consensus       377 ~~~~~ilG~~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~P~~~~  426 (452)
T 3oc4_A          377 KVTQRVLGAQLCSKNNCLEKINTLALSIQTGQTLTDLLQKDYFYQPSLTN  426 (452)
T ss_dssp             TTTCBEEEEEEEESSCCTHHHHHHHHHHHTTCBHHHHHTCCCCCCTTTSC
T ss_pred             CCCCEEEEEEEEeCCCHHHHHHHHHHHHHcCCCHHHHHhhHhccCCCCCC
Confidence             4699999999998 68874 9999999999999988876 345555554

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=100.00  E-value=9e-53  Score=412.85  Aligned_cols=404  Identities=23%  Similarity=0.267  Sum_probs=300.6

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHc--CCCCCcEEEEcCC-CCCCCCCCccccccCCCC-CCCCCCcccccCCCCCCCCHhH
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQ--GVKPGELAIISKE-VAPYERPALSKAYLFPEG-TARLPGFHVCVGSGGERLLPEW   80 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~--g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~   80 (433)
                      ++||+|||||++|++||.+|++.  |.+   |+|||++ ..+|.++.++..+..... ...+..++.    . .....++
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~---Vtvie~~~~~~~~~~gl~~~~~g~~~~~~~~~~~~~----~-~~~~~~~   74 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLDPEAH---VTMIDQASRISYGGCGIPYYVSGEVSNIESLQATPY----N-VVRDPEF   74 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHCTTSE---EEEECCC------------------------------------------
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCCC---EEEEECCCcccccccccchhhcCCCCchHHhccccc----h-hccCHHH
Confidence            57999999999999999999998  554   9999999 655655433221100000 000000000    0 1122233


Q ss_pred             H-HhCCcEEEeCceEEEEECCCCEEEeCC---Cc--EEecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHH
Q 013952           81 Y-KEKGIELILSTEIVRADIASKTLLSAT---GL--IFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLV  154 (433)
Q Consensus        81 ~-~~~~v~~~~~~~v~~i~~~~~~v~~~~---~~--~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~  154 (433)
                      + ++.+++++.+++|..++++.+.+.+.+   +.  ++.||+||+|||+.|..|+   ++|.+..+++++.+..++..+.
T Consensus        75 ~~~~~gi~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~---i~G~~~~~v~~~~~~~~~~~l~  151 (472)
T 3iwa_A           75 FRINKDVEALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSKANRPP---VEGMDLAGVTPVTNLDEAEFVQ  151 (472)
T ss_dssp             ------CEEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCS---CTTTTSBTEEECCSHHHHHHHH
T ss_pred             HhhhcCcEEEECCEEEEEECCCCEEEEeecCCCCEEEEECCEEEEeCCCCcCCCC---CCCCCCCCEEEeCCHHHHHHHH
Confidence            3 357999999999999999999887754   55  7999999999999998887   5777667899999998888887


Q ss_pred             HHHHhcCCCcEEEECCCHHHHHHHHHHHhC-CCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEec
Q 013952          155 EAIKAKKNGKAVVVGGGYIGLELSAALKIN-NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN  233 (433)
Q Consensus       155 ~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~-g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~  233 (433)
                      +.+....+++++|||+|++|+|+|..|.+. |.+|+++++.+.++++.+++++.+.+.+.+++.||+++++++|.+++. 
T Consensus       152 ~~l~~~~~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~-  230 (472)
T 3iwa_A          152 HAISAGEVSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLEG-  230 (472)
T ss_dssp             HHCCTTSCSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSSTTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEE-
T ss_pred             HHhhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCcccccccCHHHHHHHHHHHHhcCCEEEeCCEEEEEEc-
Confidence            766544589999999999999999999999 999999999999988558999999999999999999999999999987 


Q ss_pred             CCCcEEEEEeCCCcEEECCEEEEcccCccChhhhh-ccccc-CCCcEEeCCCCCCCCCCeEEcCccccccccccCccccc
Q 013952          234 ADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFK-GQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRV  311 (433)
Q Consensus       234 ~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~~-~~~~~-~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~  311 (433)
                      +++.+ .+.+.+|+++++|.||+|+|++|+++++. .++.. ++|+|.||+++||+.|+|||+|||+..+....|.+.+.
T Consensus       231 ~~~~v-~v~~~~g~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~g~~~~~  309 (472)
T 3iwa_A          231 ENGKV-ARVITDKRTLDADLVILAAGVSPNTQLARDAGLELDPRGAIIVDTRMRTSDPDIFAGGDCVTIPNLVTGKPGFF  309 (472)
T ss_dssp             SSSBE-EEEEESSCEEECSEEEECSCEEECCHHHHHHTCCBCTTCCEECCTTCBCSSTTEEECGGGEEEEBTTTSSEECC
T ss_pred             cCCeE-EEEEeCCCEEEcCEEEECCCCCcCHHHHHhCCccCCCCCCEEECCCcccCCCCEEEeccceecccccCCceeec
Confidence            34444 47788888999999999999999988774 35666 57899999999999999999999998887766666556


Q ss_pred             ccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCCCc------EEE---EcCCCcc----ccCC
Q 013952          312 EHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGD------TVL---FGDNDLA----SATH  378 (433)
Q Consensus       312 ~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~------~~~---~~~~~~~----~~~~  378 (433)
                      +++..|..||+++|+||.+...    .....+|++++.+++..+..+|+++.+      .+.   +......    ..+.
T Consensus       310 ~~~~~A~~~g~~aa~~i~g~~~----~~~~~~~~~~~~~~~~~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~  385 (472)
T 3iwa_A          310 PLGSMANRQGRVIGTNLADGDA----TFPGAVGSWAVKLFEGSASGAGLTVEGALREGYDAVNVHVEQFDRAHFYPEKTI  385 (472)
T ss_dssp             CCTTHHHHHHHHHHHHHTTCCC----CCCCBCCCEEEECSSCEEEEEECCHHHHHHTTCCEEEEEEEC-----------C
T ss_pred             chHHHHHHHHHHHHHHhcCCCc----cCCCCCcceEEEECCceeEEEECCHHHHHHcCCceEEEEEecCCccCccCCCce
Confidence            7888999999999999997542    223456778888888888888987621      121   1111111    2356


Q ss_pred             cEEEEEE--eCCEEEEEEEecC---ChHH-HHHHHHHHHcCCCCCChhhhccc
Q 013952          379 KFGTYWI--KDGKVVGVFLESG---TPEE-NKAIAKVARVQPSVESLDVLKNE  425 (433)
Q Consensus       379 ~~~~~~~--~~~~l~G~~~~g~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~  425 (433)
                      +|.|+++  ++++|||+|++|+   .++| ++.++.||++++|++||..+.-+
T Consensus       386 ~~~kli~~~~~~~ilG~~~~g~~~~~~~~~i~~~~~ai~~~~t~~~l~~~~~~  438 (472)
T 3iwa_A          386 MTLQLVVDRPTRRVLGIQGFSTLGDALTARINAVATMLASKPTVEDISNAEVV  438 (472)
T ss_dssp             EEEEEEEETTTCBEEEEEEEESCHHHHHHHHHHHHHHHTTCCBHHHHHTCCCC
T ss_pred             EEEEEEEECCCCEEEEEEEECCCcccHHHHHHHHHHHHHcCCCHHHHhccccc
Confidence            7889888  5899999999998   3356 59999999999999966655433

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=100.00  E-value=1.6e-52  Score=408.43  Aligned_cols=395  Identities=20%  Similarity=0.236  Sum_probs=305.0

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHH-H
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWY-K   82 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~   82 (433)
                      ++||+|||||+||+++|.+|++.+. ..+|+|||++ ...+..+.+...+. ..  ..        .........+++ +
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~~-~~~V~vie~~~~~~~~~~~~p~~~~-~~--~~--------~~~~~~~~~~~~~~   70 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLKP-EWDVKVFEATEWVSHAPCGIPYVVE-GL--ST--------PDKLMYYPPEVFIK   70 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCT-TSEEEEECSSSCCC-----------------------------------CTHHH
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhCc-CCCEEEEECCCccccCCcCCccccC-CC--CC--------HHHhhhcCHHHHHH
Confidence            5899999999999999999999842 3449999999 44343322221100 00  00        001112233344 6


Q ss_pred             hCCcEEEeCceEEEEECCCCEEEeCCC-cEEecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcC
Q 013952           83 EKGIELILSTEIVRADIASKTLLSATG-LIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKK  161 (433)
Q Consensus        83 ~~~v~~~~~~~v~~i~~~~~~v~~~~~-~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~  161 (433)
                      +.+++++.+++|..+++..+.+.+.++ .++.||+||+|||+.|+.|+   ++|.+..++++..+..++..+.+.+....
T Consensus        71 ~~gi~v~~~~~v~~i~~~~~~v~~~~g~~~~~~d~lviAtG~~p~~p~---i~G~~~~~v~~~~~~~~~~~~~~~~~~~~  147 (449)
T 3kd9_A           71 KRGIDLHLNAEVIEVDTGYVRVRENGGEKSYEWDYLVFANGASPQVPA---IEGVNLKGVFTADLPPDALAIREYMEKYK  147 (449)
T ss_dssp             HTTCEEETTCEEEEECSSEEEEECSSSEEEEECSEEEECCCEEECCCS---CBTTTSTTEECSCSTHHHHHHHHHHSSSC
T ss_pred             hcCcEEEecCEEEEEecCCCEEEECCceEEEEcCEEEECCCCCCCCCC---CCCCCCCCEEEeCCHHHHHHHHHHHHhcC
Confidence            789999999999999988888887777 48999999999999998877   67777778998888888888888776556


Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEE
Q 013952          162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEV  241 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v  241 (433)
                      +++++|||+|++|+|+|..|.+.|.+|+++++.+++++..+++++.+.+.+.+++. |++++++.+.++..  ++.+..+
T Consensus       148 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~-v~i~~~~~v~~i~~--~~~v~~v  224 (449)
T 3kd9_A          148 VENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRRSFDKEVTDILEEKLKKH-VNLRLQEITMKIEG--EERVEKV  224 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHTTT-SEEEESCCEEEEEC--SSSCCEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchhhcCHHHHHHHHHHHHhC-cEEEeCCeEEEEec--cCcEEEE
Confidence            88999999999999999999999999999999999998768999999999999999 99999999999986  3344344


Q ss_pred             EeCCCcEEECCEEEEcccCccChhhhh-ccccc-CCCcEEeCCCCCCCCCCeEEcCccccccccccCcccccccHHHHHH
Q 013952          242 KLKDGRTLEADIVVVGVGGRPLISLFK-GQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARK  319 (433)
Q Consensus       242 ~~~~g~~i~~d~vi~a~G~~p~~~~~~-~~~~~-~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~  319 (433)
                       +.+++++++|.||+|+|++|++++++ .++.. ++|+|.||+++||+.|+|||+|||+..++...|.+.+.+++..|..
T Consensus       225 -~~~g~~i~~D~Vv~a~G~~p~~~l~~~~gl~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~l~~~A~~  303 (449)
T 3kd9_A          225 -VTDAGEYKAELVILATGIKPNIELAKQLGVRIGETGAIWTNEKMQTSVENVYAAGDVAETRHVITGRRVWVPLAPAGNK  303 (449)
T ss_dssp             -EETTEEEECSEEEECSCEEECCHHHHHTTCCBCTTSSBCCCTTCBCSSTTEEECSTTBCEEBTTTCSEECCCCHHHHHH
T ss_pred             -EeCCCEEECCEEEEeeCCccCHHHHHhCCccCCCCCCEEECCCCccCCCCEEEeeeeeeeccccCCceEEeccHHHHHH
Confidence             44667899999999999999998775 36666 5688999999999999999999999887766666555688999999


Q ss_pred             HHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCC------CcEEEEcCCC------cc-ccCCcEEEEEE-
Q 013952          320 SAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV------GDTVLFGDND------LA-SATHKFGTYWI-  385 (433)
Q Consensus       320 ~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~------~~~~~~~~~~------~~-~~~~~~~~~~~-  385 (433)
                      ||+++|+||++...    ......|+.++.+++..+..+|+++      +..+......      .. ..+.+|.|+++ 
T Consensus       304 ~g~~aa~~i~g~~~----~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~kli~~  379 (449)
T 3kd9_A          304 MGYVAGSNIAGKEL----HFPGVLGTAVTKFMDVEIGKTGLTEMEALKEGYDVRTAFIKASTRPHYYPGGREIWLKGVVD  379 (449)
T ss_dssp             HHHHHHHHHTTCCC----CCCCBCCCEEEEETTEEEEEEECCHHHHHHTTCCEEEEEEEEESSCTTSTTCCEEEEEEEEE
T ss_pred             HHHHHHHHhcCCCc----cCCCcccceEEEEcCcEEEEecCCHHHHHHCCCceEEEEEecCCccccCCCCceEEEEEEEE
Confidence            99999999997532    1223356667777787787788875      2222221111      00 23567899888 


Q ss_pred             -eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhh
Q 013952          386 -KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVL  422 (433)
Q Consensus       386 -~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~  422 (433)
                       ++++|||+|++|+.++|+ +.++.||++++|++||..+
T Consensus       380 ~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~  418 (449)
T 3kd9_A          380 NETNRLLGVQVVGSDILPRIDTAAAMLMAGFTTKDAFFT  418 (449)
T ss_dssp             TTTCBEEEEEEEESSCHHHHHHHHHHHHTTCBHHHHHTC
T ss_pred             CCCCEEEEEEEEChHHHHHHHHHHHHHHcCCcHHHHhhc
Confidence             459999999999998885 9999999999999977655

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=100.00  E-value=1.6e-52  Score=408.93  Aligned_cols=404  Identities=20%  Similarity=0.294  Sum_probs=314.1

Q ss_pred             CeEEEECCCHHHHHHHHHHHHc--CCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHH
Q 013952            6 FKYVILGGGVSAGYAAREFAKQ--GVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK   82 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~--g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (433)
                      +||+|||||++|+++|.+|++.  |.+   |+|||++ ..+|..+.+.. ++... .... ..     ........++++
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~---V~lie~~~~~~~~~~~~~~-~~~g~-~~~~-~~-----~~~~~~~~~~~~   69 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDAD---VTAYEMNDNISFLSCGIAL-YLGKE-IKNN-DP-----RGLFYSSPEELS   69 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCE---EEEEESSSCCCBCGGGHHH-HHTTC-BGGG-CG-----GGGBSCCHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCc---EEEEECCCCCCcccccchh-hhcCC-cccC-CH-----HHhhhcCHHHHH
Confidence            5899999999999999999998  665   9999999 44554332110 11100 0000 00     011234567788


Q ss_pred             hCCcEEEeCceEEEEECCCCEEEeCC-----CcEEecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHH
Q 013952           83 EKGIELILSTEIVRADIASKTLLSAT-----GLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAI  157 (433)
Q Consensus        83 ~~~v~~~~~~~v~~i~~~~~~v~~~~-----~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~  157 (433)
                      +.+++++.++.+..++++.+++.+.+     +.+++||++|+|||++|+.|+   ++|.+..++++++++.+...+.+..
T Consensus        70 ~~gv~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtGs~p~~p~---i~g~~~~~v~~~~~~~~~~~~~~~~  146 (452)
T 2cdu_A           70 NLGANVQMRHQVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPTVPP---IPGIDSSRVYLCKNYNDAKKLFEEA  146 (452)
T ss_dssp             HTTCEEEESEEEEEEEGGGTEEEEEETTTCCEEEEECSEEEECCCEEECCCC---CTTTTSTTEEECSSHHHHHHHHHHG
T ss_pred             HcCCEEEeCCEEEEEEcCCCEEEEEecCCCceEEEECCEEEEccCCCcCCCC---CCCCCCCCEEEeCcHHHHHHHHHHh
Confidence            89999999888999998888887754     457999999999999998877   5776667899999998888887765


Q ss_pred             HhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCc
Q 013952          158 KAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGE  237 (433)
Q Consensus       158 ~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~  237 (433)
                      .  .+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++..+++++.+.+.+.+++.||+++++++|+++.. ++++
T Consensus       147 ~--~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~-~~~~  223 (452)
T 2cdu_A          147 P--KAKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFEE-VDDE  223 (452)
T ss_dssp             G--GCSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHHTTCEEEESSCEEEEEE-ETTE
T ss_pred             c--cCCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchhhhhhhhhHHHHHHHHHHHCCCEEEcCCeeEEEEc-CCCe
Confidence            4  589999999999999999999999999999999999988668999999999999999999999999999986 3555


Q ss_pred             EEEEEeCCCcEEECCEEEEcccCccChhhhhccccc-CCCcEEeCCCCCCCCCCeEEcCccccccccccCcccccccHHH
Q 013952          238 VKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDH  316 (433)
Q Consensus       238 ~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~  316 (433)
                      +..+.+ +|+++++|.||+|+|++|++++++..+.. ++|+|.||++|||+.|+|||+|||+..+....+.+.+.+++..
T Consensus       224 v~~v~~-~g~~i~~D~vv~a~G~~p~~~ll~~~l~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~  302 (452)
T 2cdu_A          224 IITKTL-DGKEIKSDIAILCIGFRPNTELLKGKVAMLDNGAIITDEYMHSSNRDIFAAGDSAAVHYNPTNSNAYIPLATN  302 (452)
T ss_dssp             EEEEET-TSCEEEESEEEECCCEEECCGGGTTTSCBCTTSCBCCCTTSBCSSTTEEECSTTBCEEETTTTEEECCCCHHH
T ss_pred             EEEEEe-CCCEEECCEEEECcCCCCCHHHHHHhhhcCCCCCEEECCCcCcCCCCEEEcceEEEeccccCCCeeecchHHH
Confidence            545655 67889999999999999999987655555 5688999999999999999999999987666665555678999


Q ss_pred             HHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCCCc------EEE---EcCCCcc----ccCCcEEEE
Q 013952          317 ARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGD------TVL---FGDNDLA----SATHKFGTY  383 (433)
Q Consensus       317 A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~------~~~---~~~~~~~----~~~~~~~~~  383 (433)
                      |..||+++|.||.+...    ....+.|++++.+++..+..+|.++.+      .+.   +.+....    ....+|.|+
T Consensus       303 A~~~g~~aa~~i~g~~~----~~~~~~~~~~~~~~~~~~~~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~k~  378 (452)
T 2cdu_A          303 AVRQGRLVGLNLTEDKV----KDMGTQSSSGLKLYGRTYVSTGINTALAKANNLKVSEVIIADNYRPEFMLSTDEVLMSL  378 (452)
T ss_dssp             HHHHHHHHHHTSSSCCC----CCCCBCCCEEEEETTEEEEEEECCHHHHHHTTCCCEEEEEEEESSCTTBSCCCEEEEEE
T ss_pred             HHHHHHHHHHHhCCCCC----cCCCccceEEEEECCeeeEeecCCHHHHHHcCCceEEEEEecCCccccCCCCceEEEEE
Confidence            99999999999986431    222345677788888888888977521      111   1111111    123468888


Q ss_pred             EE--eCCEEEEEEEecC-ChHHH-HHHHHHHHcCCCCCChhhh-cccCCCccc
Q 013952          384 WI--KDGKVVGVFLESG-TPEEN-KAIAKVARVQPSVESLDVL-KNEGLSFAS  431 (433)
Q Consensus       384 ~~--~~~~l~G~~~~g~-~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  431 (433)
                      ++  ++++|+|+|++|+ .++++ +.++.+|++++|++|+..+ .-+-++|++
T Consensus       379 ~~~~~~~~ilG~~~~g~~~~~~~i~~~~~ai~~~~~~~~l~~~~~~~~Pt~~e  431 (452)
T 2cdu_A          379 VYDPKTRVILGGALSSMHDVSQSANVLSVCIQNKNTIDDLAMVDMLFQPQFDR  431 (452)
T ss_dssp             EECTTTCBEEEEEEEESSCCHHHHHHHHHHHHTTCBHHHHHHSCCCCCTTTCC
T ss_pred             EEECCCCEEEEEEEEcCccHHHHHHHHHHHHHcCCCHHHHhhhhhccCCCCCc
Confidence            87  4799999999998 78775 9999999999999988765 444555543

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=100.00  E-value=1.5e-50  Score=407.44  Aligned_cols=400  Identities=21%  Similarity=0.286  Sum_probs=313.6

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHh
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   83 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (433)
                      ++||+|||||+||++||.+|++.+. ..+|+|||++ ...|.++.+...+. ..    +....    ......+..+.++
T Consensus        36 ~~~VvIIGgG~AGl~aA~~L~~~~~-g~~V~vie~~~~~~~~~~~lp~~~~-g~----~~~~~----~~~~~~~~~~~~~  105 (588)
T 3ics_A           36 SRKIVVVGGVAGGASVAARLRRLSE-EDEIIMVERGEYISFANCGLPYYIG-GV----ITERQ----KLLVQTVERMSKR  105 (588)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCS-SSEEEEECSSSCSSBCGGGHHHHHT-TS----SCCGG----GGBSSCHHHHHHH
T ss_pred             CCCEEEECCcHHHHHHHHHHHhhCc-CCCEEEEECCCCccccCCCCchhhc-Cc----CCChH----HhhccCHHHHHHh
Confidence            4799999999999999999999831 2349999999 55555433321110 00    00000    0012234455568


Q ss_pred             CCcEEEeCceEEEEECCCCEEEeC---CCc--EEecceEEEccCCCccccCCCCCCCC-CCCCEEEecCHHHHHHHHHHH
Q 013952           84 KGIELILSTEIVRADIASKTLLSA---TGL--IFKYQILVIATGSTVLRLTDFGVEGA-DAKNIFYLREIDDADKLVEAI  157 (433)
Q Consensus        84 ~~v~~~~~~~v~~i~~~~~~v~~~---~~~--~~~~d~lvlAtG~~~~~~~~~~~~g~-~~~~v~~~~~~~~~~~~~~~~  157 (433)
                      .++++..++.|..++++.+.+.+.   ++.  ++.||+||+|||+.|..|+   ++|. +..++++.++..+...+...+
T Consensus       106 ~gi~v~~~~~V~~id~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~~p~---i~G~~~~~~v~~~~~~~~~~~~~~~l  182 (588)
T 3ics_A          106 FNLDIRVLSEVVKINKEEKTITIKNVTTNETYNEAYDVLILSPGAKPIVPS---IPGIEEAKALFTLRNVPDTDRIKAYI  182 (588)
T ss_dssp             TTCEEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCC---CTTTTTCTTEEECSSHHHHHHHHHHH
T ss_pred             cCcEEEECCEEEEEECCCCEEEEeecCCCCEEEEeCCEEEECCCCCCCCCC---CCCcccCCCeEEeCCHHHHHHHHHHH
Confidence            899999999999999999988764   455  7899999999999998887   5776 567899999999998888877


Q ss_pred             HhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCc
Q 013952          158 KAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGE  237 (433)
Q Consensus       158 ~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~  237 (433)
                      ....+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.+.+++.||+++++++|.+++.+  +.
T Consensus       183 ~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~--~~  259 (588)
T 3ics_A          183 DEKKPRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMPP-IDYEMAAYVHEHMKNHDVELVFEDGVDALEEN--GA  259 (588)
T ss_dssp             HHHCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-SCHHHHHHHHHHHHHTTCEEECSCCEEEEEGG--GT
T ss_pred             hhcCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccccc-CCHHHHHHHHHHHHHcCCEEEECCeEEEEecC--CC
Confidence            6557899999999999999999999999999999999998887 89999999999999999999999999999862  22


Q ss_pred             EEEEEeCCCcEEECCEEEEcccCccChhhhh-ccccc-CCCcEEeCCCCCCCCCCeEEcCccccccccccCcccccccHH
Q 013952          238 VKEVKLKDGRTLEADIVVVGVGGRPLISLFK-GQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVD  315 (433)
Q Consensus       238 ~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~~-~~~~~-~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~  315 (433)
                        .+.+.+|+++++|.||+|+|++|++++++ .++.. ++|+|.||+++||+.|+|||+|||+..+....|.+...+++.
T Consensus       260 --~v~~~~g~~i~~D~Vi~a~G~~p~~~~l~~~g~~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~  337 (588)
T 3ics_A          260 --VVRLKSGSVIQTDMLILAIGVQPESSLAKGAGLALGVRGTIKVNEKFQTSDPHIYAIGDAIEVKDFVTETETMIPLAW  337 (588)
T ss_dssp             --EEEETTSCEEECSEEEECSCEEECCHHHHHTTCCBCGGGCBCCCTTSBCSSTTEEECGGGBCEEBTTTCCEECCCCHH
T ss_pred             --EEEECCCCEEEcCEEEEccCCCCChHHHHhcCceEcCCCCEEECCccccCCCCEEEeeeeeecccccCCcccccccHH
Confidence              47788999999999999999999998774 45666 578999999999999999999999988776666655567899


Q ss_pred             HHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCCC------cEEEEcCCC-------ccccCCcEEE
Q 013952          316 HARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG------DTVLFGDND-------LASATHKFGT  382 (433)
Q Consensus       316 ~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~------~~~~~~~~~-------~~~~~~~~~~  382 (433)
                      .|..||+++|+||++...   ......+|..+..+++..+..+|+++.      ..+.....+       ....+.+|.|
T Consensus       338 ~A~~~g~~aa~~i~g~~~---~~~~~~~~~~~~~~~~~~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~k  414 (588)
T 3ics_A          338 PANRQGRMLADIIHGHTD---SLYKGTLGTSVAKVFDLTVATTGLNEKILKRLNIPYEVVHVQANSHAGYYPNATPVLIK  414 (588)
T ss_dssp             HHHHHHHHHHHHHTTCCS---SCCCCBCCCEEEEETTEEEEEEECCHHHHHHTTCCCEEEEEEEESSCTTSTTCCEEEEE
T ss_pred             HHHHHHHHHHHHhcCCCc---cccCCcccceEEEECCeEEEEecCCHHHHHHcCCCeEEEEEecCCccccCCCCceEEEE
Confidence            999999999999997211   123345677776677777777888752      111111111       0123467899


Q ss_pred             EEE--eCCEEEEEEEecCC-hHH-HHHHHHHHHcCCCCCChhhhccc
Q 013952          383 YWI--KDGKVVGVFLESGT-PEE-NKAIAKVARVQPSVESLDVLKNE  425 (433)
Q Consensus       383 ~~~--~~~~l~G~~~~g~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~  425 (433)
                      +++  ++++|||+|++|+. ++| |+.++.||+.++|++||..+.-.
T Consensus       415 ~i~~~~~~~ilG~~~~g~~~~~e~i~~~~~ai~~~~t~~~l~~~~~~  461 (588)
T 3ics_A          415 LIFNKDSGKIYGAQTLGRDGVDKRMDVIATAIKANLTVLDLPDLELS  461 (588)
T ss_dssp             EEECTTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBTTTGGGCCCC
T ss_pred             EEEECCCCeEEEEEEEcCCcHHHHHHHHHHHHHcCCCHHHhhhhhhc
Confidence            888  68999999999974 666 59999999999999987765543

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=100.00  E-value=3e-51  Score=399.26  Aligned_cols=402  Identities=22%  Similarity=0.281  Sum_probs=310.2

Q ss_pred             CeEEEECCCHHHHHHHHHHHHc--CCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHH
Q 013952            6 FKYVILGGGVSAGYAAREFAKQ--GVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK   82 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~--g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (433)
                      +||+|||||+||++||..|++.  |.+   |+|||++ ...|..+.+.. ++...    ....     ........++++
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~---V~lie~~~~~~~~~~~~~~-~~~~~----~~~~-----~~~~~~~~~~~~   67 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAE---IQWYEKGDFISFLSAGMQL-YLEGK----VKDV-----NSVRYMTGEKME   67 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSE---EEEEESSSSSSBCGGGHHH-HHTTS----SCCG-----GGSBSCCHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCe---EEEEECCCccCcccccchh-hhcCc----cCCH-----HHhhcCCHHHHH
Confidence            4899999999999999999998  555   9999999 44443322111 11100    0000     011234567788


Q ss_pred             hCCcEEEeCceEEEEECCCCEEEeCC---Cc--EEecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHH
Q 013952           83 EKGIELILSTEIVRADIASKTLLSAT---GL--IFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAI  157 (433)
Q Consensus        83 ~~~v~~~~~~~v~~i~~~~~~v~~~~---~~--~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~  157 (433)
                      +.+++++.++.+..++++.++|.+.+   ++  ++.||+||+|||++|..|+   +||.+..+++++++..++..+.+.+
T Consensus        68 ~~gv~~~~~~~v~~i~~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~---i~G~~~~~v~~~~~~~~~~~l~~~~  144 (447)
T 1nhp_A           68 SRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELD---IPGKDLDNIYLMRGRQWAIKLKQKT  144 (447)
T ss_dssp             HTTCEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCC---STTTTSBSEECCCHHHHHHHHHHHH
T ss_pred             HCCCEEEECCEEEEEeCCCCEEEEEecCCCceEEEeCCEEEEcCCCCcCCCC---CCCCCCCCeEEECCHHHHHHHHHHh
Confidence            88999999999999999888887754   54  4899999999999998887   5776666799888888888887776


Q ss_pred             HhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCc
Q 013952          158 KAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGE  237 (433)
Q Consensus       158 ~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~  237 (433)
                      ....+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++..+++++.+.+.+.+++.||+++++++|.++..  +++
T Consensus       145 ~~~~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~--~~~  222 (447)
T 1nhp_A          145 VDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEG--DGR  222 (447)
T ss_dssp             TCTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTTEEEEESCCEEEEEC--SSB
T ss_pred             hhcCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCcccccccCCHHHHHHHHHHHHhCCCEEEcCCEEEEEEc--cCc
Confidence            543589999999999999999999999999999999998888668999999999999999999999999999986  344


Q ss_pred             EEEEEeCCCcEEECCEEEEcccCccChhhhhccccc-CCCcEEeCCCCCCCCCCeEEcCccccccccccCcccccccHHH
Q 013952          238 VKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDH  316 (433)
Q Consensus       238 ~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~  316 (433)
                      +..+.+ ++.++++|.||+|+|++|+..+++..+.. .+|+|.||++|||+.|+|||+|||+..+....+.+.+.+++..
T Consensus       223 v~~v~~-~~~~i~~d~vi~a~G~~p~~~~~~~~~~~~~~G~i~Vd~~~~t~~~~Iya~GD~~~~~~~~~g~~~~~~~~~~  301 (447)
T 1nhp_A          223 VQKVVT-DKNAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATN  301 (447)
T ss_dssp             CCEEEE-SSCEEECSEEEECSCEEESCGGGTTTSCBCTTSCBCCCTTCBCSSTTEEECGGGSCEEEGGGTEEECCCCHHH
T ss_pred             EEEEEE-CCCEEECCEEEECcCCCCChHHHHhhhhhcCCCcEEECccccCCCCCEEEeeeEEEeeccCCCCceechhHHH
Confidence            445666 45689999999999999999877655555 5688999999999999999999999877655565555578999


Q ss_pred             HHHHHHHHHHHHhccCCCCCccCC-CCCCeEEEeecccceEEecCCCCc------EEE---EcCCCcc----ccCCcEEE
Q 013952          317 ARKSAEQAVKTIMATEGGKTVTGY-DYLPYFYSRAFDLSWQFYGDNVGD------TVL---FGDNDLA----SATHKFGT  382 (433)
Q Consensus       317 A~~~g~~aa~~i~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~g~~~~~------~~~---~~~~~~~----~~~~~~~~  382 (433)
                      |..||+++|.||.+..     ..+ ...++.+..+++..+..+|.++.+      .+.   +.+....    ....+|.|
T Consensus       302 A~~qg~~aa~~i~g~~-----~~~~~~~~~~~~~~~~~~~~~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~k  376 (447)
T 1nhp_A          302 ARKQGRFAVKNLEEPV-----KPFPGVQGSSGLAVFDYKFASTGINEVMAQKLGKETKAVTVVEDYLMDFNPDKQKAWFK  376 (447)
T ss_dssp             HHHHHHHHHHTSSSCC-----CCCCCBCCCEEEEETTEEEEEEECCHHHHHHHTCCCEEEEEEEESSCTTCTTCCEEEEE
T ss_pred             HHHHHHHHHHhhcCCC-----CCCCCccccEEEEECCeeeEEecCCHHHHHHcCCceEEEEEEcCCccccCCCCceEEEE
Confidence            9999999999998742     223 234666777777777777876521      111   1111111    12456888


Q ss_pred             EEEe--CCEEEEEEEecCC-hHH-HHHHHHHHHcCCCCCChhhh-cccCCCccc
Q 013952          383 YWIK--DGKVVGVFLESGT-PEE-NKAIAKVARVQPSVESLDVL-KNEGLSFAS  431 (433)
Q Consensus       383 ~~~~--~~~l~G~~~~g~~-~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  431 (433)
                      +++.  +++|+|+|++|+. +.+ ++.++.+|++++|++|+..+ .-+-++|++
T Consensus       377 ~~~~~~~~~ilG~~~~g~~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~~Pt~~e  430 (447)
T 1nhp_A          377 LVYDPETTQILGAQLMSKADLTANINAISLAIQAKMTIEDLAYADFFFQPAFDK  430 (447)
T ss_dssp             EEECTTTCBEEEEEEEESSCCTTHHHHHHHHHHTTCBHHHHHTCCCCCCTTTCC
T ss_pred             EEEECCCCEEEEEEEEcCccHHHHHHHHHHHHHcCCCHHHHhhcceecCCCCCC
Confidence            8873  7999999999988 777 59999999999999988765 344555544

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=100.00  E-value=2.6e-50  Score=404.64  Aligned_cols=397  Identities=22%  Similarity=0.304  Sum_probs=312.7

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHH-Hh
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWY-KE   83 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~   83 (433)
                      +||+|||||+||++||.+|++.+. ..+|+|+|++ ...|.++.+...+ ......         .........+++ ++
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~-~~~V~lie~~~~~~~~~~~l~~~~-~~~~~~---------~~~~~~~~~~~~~~~   70 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSE-TAEIIMFERGEYVSFANCGLPYHI-SGEIAQ---------RSALVLQTPESFKAR   70 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCS-SSEEEEECSSSCSSBCGGGHHHHH-TSSSCC---------GGGGBCCCHHHHHHH
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCc-CCCEEEEECCCCccccccCchHHh-cCCcCC---------hHHhhccCHHHHHHh
Confidence            489999999999999999999842 3459999999 5555544332111 110000         000112333444 45


Q ss_pred             CCcEEEeCceEEEEECCCCEEEeCC---Cc--EEecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHH
Q 013952           84 KGIELILSTEIVRADIASKTLLSAT---GL--IFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIK  158 (433)
Q Consensus        84 ~~v~~~~~~~v~~i~~~~~~v~~~~---~~--~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~  158 (433)
                      .+++++.+++|..++++.+.+.+.+   +.  ++.||+||||||++|+.|+   +||.+..+++++++..++..+.+.+.
T Consensus        71 ~~i~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~---ipG~~~~~v~~~~~~~~~~~l~~~~~  147 (565)
T 3ntd_A           71 FNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIVPP---IPGVDNPLTHSLRNIPDMDRILQTIQ  147 (565)
T ss_dssp             HCCEEETTEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCC---CTTCCSTTEECCSSHHHHHHHHHHHH
T ss_pred             cCcEEEECCEEEEEECCCCEEEEEecCCCCeEEEECCEEEECCCCCCCCCC---CCCCCCCCEEEeCCHHHHHHHHHHHh
Confidence            8999999999999999999887653   43  7899999999999998887   67877788999999998888887776


Q ss_pred             hcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEec-----
Q 013952          159 AKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN-----  233 (433)
Q Consensus       159 ~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~-----  233 (433)
                      ...+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.+.+++.||++++++.+.++..+     
T Consensus       148 ~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~  226 (565)
T 3ntd_A          148 MNNVEHATVVGGGFIGLEMMESLHHLGIKTTLLELADQVMTP-VDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHV  226 (565)
T ss_dssp             HTTCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSCTT-SCHHHHHHHHHHHHHTTCEEEETCCEEEEEEECCCCC
T ss_pred             hCCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCccchh-cCHHHHHHHHHHHHHCCCEEEeCCeEEEEeccccccc
Confidence            667899999999999999999999999999999999998884 89999999999999999999999999999862     


Q ss_pred             -------------CCCcEEEEEeCCCcEEECCEEEEcccCccChhhhh-ccccc-CCCcEEeCCCCCCCCCCeEEcCccc
Q 013952          234 -------------ADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFK-GQVAE-NKGGIETDDFFKTSADDVYAVGDVA  298 (433)
Q Consensus       234 -------------~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~~-~~~~~-~~g~i~vd~~~~t~~~~vfa~Gd~~  298 (433)
                                   .++. ..+.+.+|+++++|.||+|+|++|++.++. .++.. ++|+|.||+++||+.|+|||+|||+
T Consensus       227 ~~~~~~~~~~~~~~~~~-~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~g~~~~~~g~i~vd~~~~t~~~~IyA~GD~~  305 (565)
T 3ntd_A          227 ASDAAGEDTAHQHIKGH-LSLTLSNGELLETDLLIMAIGVRPETQLARDAGLAIGELGGIKVNAMMQTSDPAIYAVGDAV  305 (565)
T ss_dssp             CCGGGTCCCTTCCTTCE-EEEEETTSCEEEESEEEECSCEEECCHHHHHHTCCBCTTSSBCCCTTCBCSSTTEEECGGGB
T ss_pred             cccccccccccccCCCc-EEEEEcCCCEEEcCEEEECcCCccchHHHHhCCcccCCCCCEEECCCcccCCCCEEEeeeeE
Confidence                         1333 457778888999999999999999988774 36666 5789999999999999999999999


Q ss_pred             cccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCC-CeEEEeecccceEEecCCCCc---------EEEE
Q 013952          299 TFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYL-PYFYSRAFDLSWQFYGDNVGD---------TVLF  368 (433)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~g~~~~~---------~~~~  368 (433)
                      ..+....|.+...+++..|..||++||+||++..     ..|... +..++.+++..+..+|+++.+         ...+
T Consensus       306 ~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~-----~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~g~~~~~~~~  380 (565)
T 3ntd_A          306 EEQDFVTGQACLVPLAGPANRQGRMAADNMFGRE-----ERYQGTQGTAICKVFDLAVGATGKNEKQLKQAGIAFEKVYV  380 (565)
T ss_dssp             CEEBTTTCCEECCCCHHHHHHHHHHHHHHHTTCC-----CCCCCBCCCEEEEETTEEEEEEECCHHHHHHTTCCCEEEEE
T ss_pred             eeccccCCceeecccHHHHHHHHHHHHHHhcCCC-----ccCCCcccceEEEEcCcEEEEecCCHHHHHHcCCCeEEEEE
Confidence            8887766766666789999999999999999754     234443 445566788888888987522         1111


Q ss_pred             cCCCc---c-ccCCcEEEEEE--eCCEEEEEEEecCCh-HH-HHHHHHHHHcCCCCCChhhhc
Q 013952          369 GDNDL---A-SATHKFGTYWI--KDGKVVGVFLESGTP-EE-NKAIAKVARVQPSVESLDVLK  423 (433)
Q Consensus       369 ~~~~~---~-~~~~~~~~~~~--~~~~l~G~~~~g~~~-~~-~~~~~~~~~~~~~~~~~~~~~  423 (433)
                      .....   . ....+|.|+++  ++++|||+|++|+++ +| ++.++.||++++|++||..+.
T Consensus       381 ~~~~~~~~~~~~~~~~~k~v~~~~~~~ilG~~~~g~~a~~e~i~~~~~ai~~~~~~~~l~~~~  443 (565)
T 3ntd_A          381 HTASHASYYPGAEVVSFKLLFDPVKGTIFGAQAVGKDGIDKRIDVMAVAQRAGMTVEQLQHLE  443 (565)
T ss_dssp             EEESSCTTSTTCCEEEEEEEECTTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBHHHHTTCC
T ss_pred             ecCcccCcCCCCceEEEEEEEECCCCEEEEEEEECCccHHHHHHHHHHHHHcCCCHHHHhhhh
Confidence            11111   1 23457889888  689999999999998 67 599999999999999777654

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=100.00  E-value=7.5e-50  Score=392.31  Aligned_cols=401  Identities=21%  Similarity=0.297  Sum_probs=308.5

Q ss_pred             CeEEEECCCHHHHHHHHHHHHc--CCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHH-
Q 013952            6 FKYVILGGGVSAGYAAREFAKQ--GVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWY-   81 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~--g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   81 (433)
                      +||+|||||+||+++|.+|++.  |.+   |+|||++ ...|.++.++. ++...    ....     ........+.+ 
T Consensus        37 ~dvvIIG~G~aGl~aA~~l~~~~~g~~---V~lie~~~~~~~~~~~~~~-~~~~~----~~~~-----~~l~~~~~~~~~  103 (480)
T 3cgb_A           37 MNYVIIGGDAAGMSAAMQIVRNDENAN---VVTLEKGEIYSYAQCGLPY-VISGA----IAST-----EKLIARNVKTFR  103 (480)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCE---EEEECSSSCCSBCGGGHHH-HHTTS----SSCG-----GGGBSSCHHHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCcCCc---EEEEECCCCCCCCCCCcch-hhcCC----cCCH-----HHhhhcCHHHHH
Confidence            6999999999999999999997  554   9999999 54454432221 11100    0000     01122345555 


Q ss_pred             HhCCcEEEeCceEEEEECCCCEEEeCC---Cc--EEecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHH
Q 013952           82 KEKGIELILSTEIVRADIASKTLLSAT---GL--IFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEA  156 (433)
Q Consensus        82 ~~~~v~~~~~~~v~~i~~~~~~v~~~~---~~--~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~  156 (433)
                      +..+++++.++.|..++++.+.+.+.+   ++  ++.||+||+|||++|+.|+   ++|.+..+++++.+..++..+.+.
T Consensus       104 ~~~gv~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~~p~---i~G~~~~~v~~~~~~~~~~~l~~~  180 (480)
T 3cgb_A          104 DKYGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPVMPE---WEGRDLQGVHLLKTIPDAERILKT  180 (480)
T ss_dssp             HTTCCEEESSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCC---CBTTTSBTEECCSSHHHHHHHHHH
T ss_pred             hhcCCEEEeCCEEEEEECCCCEEEEEEcCCCceEEEEcCEEEECCCCcccCCC---CCCccCCCEEEeCCHHHHHHHHHH
Confidence            445999999889999999888887653   65  7999999999999998877   577666789988899998888877


Q ss_pred             HHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCC
Q 013952          157 IKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG  236 (433)
Q Consensus       157 ~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g  236 (433)
                      +....+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.+.+++.||+++++++|.++..  ++
T Consensus       181 ~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~--~~  257 (480)
T 3cgb_A          181 LETNKVEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGTI-YDGDMAEYIYKEADKHHIEILTNENVKAFKG--NE  257 (480)
T ss_dssp             HHSSCCCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGTTSS-SCHHHHHHHHHHHHHTTCEEECSCCEEEEEE--SS
T ss_pred             hhhcCCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCchhhc-CCHHHHHHHHHHHHHcCcEEEcCCEEEEEEc--CC
Confidence            76546899999999999999999999999999999999888875 7999999999999999999999999999987  45


Q ss_pred             cEEEEEeCCCcEEECCEEEEcccCccChhhhhc-cccc-CCCcEEeCCCCCCCCCCeEEcCccccccccccCcccccccH
Q 013952          237 EVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHV  314 (433)
Q Consensus       237 ~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~-~~~~-~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~  314 (433)
                      ++..+.+.+ .++++|.||+|+|++|+.++++. ++.. ++|+|.||+++||+.|+|||+|||+..+....+.+.+.+++
T Consensus       258 ~v~~v~~~~-~~i~~D~vi~a~G~~p~~~~l~~~g~~~~~~G~I~Vd~~~~ts~p~IyA~GD~~~~~~~~~g~~~~~~~~  336 (480)
T 3cgb_A          258 RVEAVETDK-GTYKADLVLVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYMQTNVQDVYAAGDCATHYHVIKEIHDHIPIG  336 (480)
T ss_dssp             BEEEEEETT-EEEECSEEEECSCEEESCGGGTTSCCCBCTTSCBCCCTTSBCSSTTEEECGGGBCEEBTTTCSEECCCCH
T ss_pred             cEEEEEECC-CEEEcCEEEECcCCCcChHHHHhCCcccCCCCCEEECCCccCCCCCEEEeeeEEEecCCCCCcceecchH
Confidence            555666654 58999999999999999887743 4665 56899999999999999999999998876655655555789


Q ss_pred             HHHHHHHHHHHHHHhccCCCCCccCCC-CCCeEEEeecccceEEecCCCC------cEEE---EcCCCcc----ccCCcE
Q 013952          315 DHARKSAEQAVKTIMATEGGKTVTGYD-YLPYFYSRAFDLSWQFYGDNVG------DTVL---FGDNDLA----SATHKF  380 (433)
Q Consensus       315 ~~A~~~g~~aa~~i~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~g~~~~------~~~~---~~~~~~~----~~~~~~  380 (433)
                      ..|..||+++|.||.+..     ..|. +.++.+..+++..+..+|.++.      ..+.   +......    ....+|
T Consensus       337 ~~A~~qg~~aa~~i~g~~-----~~~~~~~~~~~~~~~~~~~~~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~  411 (480)
T 3cgb_A          337 TTANKQGRLAGLNMLDKR-----RAFKGTLGTGIIKFMNLTLARTGLNEKEAKGLHIPYKTVKVDSTNMAGYYPNAKPLY  411 (480)
T ss_dssp             HHHHHHHHHHHHHHTTCC-----CCCCCBCCCEEEEETTEEEEEEECCHHHHHHTTCCEEEEEEEEESSCTTSTTCCEEE
T ss_pred             HHHHHHHHHHHHHhcCCC-----ccCCCccceeEEEECCcEEEEeCCCHHHHHHcCCceEEEEEecCCcccccCCCceEE
Confidence            999999999999998743     2332 3334566667777777787642      1111   1111100    124568


Q ss_pred             EEEEE--eCCEEEEEEEecCC-hHH-HHHHHHHHHcCCCCCChhhh-cccCCCccc
Q 013952          381 GTYWI--KDGKVVGVFLESGT-PEE-NKAIAKVARVQPSVESLDVL-KNEGLSFAS  431 (433)
Q Consensus       381 ~~~~~--~~~~l~G~~~~g~~-~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  431 (433)
                      .|+++  ++|+|+|++++|+. ++| ++.++.+|++++|++|+..+ ..+.++|++
T Consensus       412 ~kl~~~~~~~~ilG~~~vg~~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~~Pt~~e  467 (480)
T 3cgb_A          412 LKLLYRSDTKQLLGGQVIGEEGVDKRIDVIAMALFNKMSIHDLEDVDLSYAPPYNS  467 (480)
T ss_dssp             EEEEEETTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBGGGGGGCCCCCCTTTCC
T ss_pred             EEEEEECCCCEEEEEEEECCccHHHHHHHHHHHHHcCCCHHHHhhcccccCCCCCC
Confidence            88887  48999999999998 877 49999999999999988765 334455544

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=100.00  E-value=1.6e-49  Score=379.70  Aligned_cols=366  Identities=22%  Similarity=0.314  Sum_probs=288.3

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCcccccCCCCCC-CCHhHH
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVCVGSGGER-LLPEWY   81 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~   81 (433)
                      .++||+|||||+||++||.+|++.|. ..+|+++|++ .+.|.++.++..+......       .    .... ....++
T Consensus         3 ~~~dvvIIG~G~aGl~aA~~l~~~g~-~~~V~lie~~~g~~~~~~~l~~~~~~~~~~-------~----~~~~~~~~~~~   70 (384)
T 2v3a_A            3 ERAPLVIIGTGLAGYNLAREWRKLDG-ETPLLMITADDGRSYSKPMLSTGFSKNKDA-------D----GLAMAEPGAMA   70 (384)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHTTCS-SSCEEEECSSCCCEECGGGGGGTTTTTCCH-------H----HHEEECHHHHH
T ss_pred             CCCcEEEECChHHHHHHHHHHHhhCC-CCCEEEEECCCCCccCcccccHHHhCCCCH-------H----HhhccCHHHHH
Confidence            46899999999999999999999985 3459999999 6666655444322111000       0    0011 234556


Q ss_pred             HhCCcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcC
Q 013952           82 KEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKK  161 (433)
Q Consensus        82 ~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~  161 (433)
                      ++.+++++.++.+..++++.++|.+.+ .++.||+||+|||+.|..|+   ++|.+..++++.+++.++..+...+.  .
T Consensus        71 ~~~~v~~~~~~~v~~i~~~~~~v~~~~-~~~~~d~lviAtG~~p~~p~---i~g~~~~~v~~~~~~~~~~~~~~~~~--~  144 (384)
T 2v3a_A           71 EQLNARILTHTRVTGIDPGHQRIWIGE-EEVRYRDLVLAWGAEPIRVP---VEGDAQDALYPINDLEDYARFRQAAA--G  144 (384)
T ss_dssp             HHTTCEEECSCCCCEEEGGGTEEEETT-EEEECSEEEECCCEEECCCC---CBSTTTTCEEECSSHHHHHHHHHHHT--T
T ss_pred             HhCCcEEEeCCEEEEEECCCCEEEECC-cEEECCEEEEeCCCCcCCCC---CCCcCcCCEEEECCHHHHHHHHHhhc--c
Confidence            788999998888999998888888865 47999999999999998877   57766578999999998888777665  4


Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEE
Q 013952          162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEV  241 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v  241 (433)
                      +++++|||+|++|+|+|..|.+.|.+|+++++.+.+++..+++++.+.+.+.+++.||+++++++|.++..+  +....+
T Consensus       145 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~--~~~~~v  222 (384)
T 2v3a_A          145 KRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLKKA--GEGLEA  222 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHTTTCEEEESCCEEEEEEE--TTEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhhcccCHHHHHHHHHHHHHcCCEEEeCCEEEEEEec--CCEEEE
Confidence            899999999999999999999999999999999998887679999999999999999999999999999873  233578


Q ss_pred             EeCCCcEEECCEEEEcccCccChhhhh-cccccCCCcEEeCCCCCCCCCCeEEcCccccccccccCcccccccHHHHHHH
Q 013952          242 KLKDGRTLEADIVVVGVGGRPLISLFK-GQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKS  320 (433)
Q Consensus       242 ~~~~g~~i~~d~vi~a~G~~p~~~~~~-~~~~~~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~  320 (433)
                      .+.+|+++++|.||+|+|++|+.++++ .++..++| |.||+++||+.|+|||+|||+..+..      ..+++..|..|
T Consensus       223 ~~~~g~~i~~d~vv~a~G~~p~~~l~~~~g~~~~~g-i~vd~~~~t~~~~IyA~GD~~~~~~~------~~~~~~~a~~~  295 (384)
T 2v3a_A          223 HLSDGEVIPCDLVVSAVGLRPRTELAFAAGLAVNRG-IVVDRSLRTSHANIYALGDCAEVDGL------NLLYVMPLMAC  295 (384)
T ss_dssp             EETTSCEEEESEEEECSCEEECCHHHHHTTCCBSSS-EEECTTCBCSSTTEEECGGGEEETTB------CCCSHHHHHHH
T ss_pred             EECCCCEEECCEEEECcCCCcCHHHHHHCCCCCCCC-EEECCCCCCCCCCEEEeeeeeeECCC------CcchHHHHHHH
Confidence            888998999999999999999998764 45666666 99999999999999999999975422      11568889999


Q ss_pred             HHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCCCc---EEEEcCCCccccCCcEEEEEE-eCCEEEEEEEe
Q 013952          321 AEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGD---TVLFGDNDLASATHKFGTYWI-KDGKVVGVFLE  396 (433)
Q Consensus       321 g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~l~G~~~~  396 (433)
                      |+.+|+||.+..   .+..|..+|+++.. ++..+...|.....   ....++      ..+|.+++. ++|+|+|++++
T Consensus       296 g~~~a~~i~g~~---~~~~~~~~p~~~~~-~~~~~~~~g~~~~~~~~~~~~~~------~~g~~~~~~~~~~~i~G~~~~  365 (384)
T 2v3a_A          296 ARALAQTLAGNP---SQVAYGPMPVTVKT-PACPLVVSPPPRGMDGQWLVEGS------GTDLKVLCRDTAGRVIGYALT  365 (384)
T ss_dssp             HHHHHHHHTTCC---CCCCCCCCCEEECC-TTSCEEEECCCTTCCCEEEEEEE------TTEEEEEEECTTSCEEEEEEE
T ss_pred             HHHHHHHhcCCC---ccCCCCCcceEEEE-CCeeEEEecCCCCCCceEEEEec------CCcEEEEEEccCCEEEEEEEE
Confidence            999999999753   23566778886644 44566666765432   122222      346888777 48999999999


Q ss_pred             cCChHHHHHH
Q 013952          397 SGTPEENKAI  406 (433)
Q Consensus       397 g~~~~~~~~~  406 (433)
                      |+.++|+..+
T Consensus       366 g~~a~e~~~~  375 (384)
T 2v3a_A          366 GAAVNEKLAL  375 (384)
T ss_dssp             GGGGGGHHHH
T ss_pred             CcchHHHHHH
Confidence            9999996433

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=1.9e-49  Score=375.69  Aligned_cols=351  Identities=24%  Similarity=0.391  Sum_probs=275.7

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      .|++|||||+||++||..|++.| +   |+|||++ ...|.++.+++.+. ..    .. .     ........+++++.
T Consensus         9 ~~vvIIGgG~AGl~aA~~l~~~g-~---V~lie~~~~~~~~~~~l~~~~~-g~----~~-~-----~~~~~~~~~~~~~~   73 (367)
T 1xhc_A            9 SKVVIVGNGPGGFELAKQLSQTY-E---VTVIDKEPVPYYSKPMLSHYIA-GF----IP-R-----NRLFPYSLDWYRKR   73 (367)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTS-E---EEEECSSSSCCCCSTTHHHHHT-TS----SC-G-----GGGCSSCHHHHHHH
T ss_pred             CcEEEECCcHHHHHHHHHHhhcC-C---EEEEECCCCCccccchhHHHHh-CC----CC-H-----HHhccCCHHHHHhC
Confidence            59999999999999999999988 5   9999999 66676666554221 10    00 0     01123456788889


Q ss_pred             CcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCCc
Q 013952           85 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGK  164 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  164 (433)
                      +++++.+++|..++++.+.|. .+++++.||+||||||++|+.|+   +||  .++++++++..++..+.+.+.  ++++
T Consensus        74 ~v~~~~g~~v~~id~~~~~V~-~~g~~~~~d~lViATGs~p~~p~---i~G--~~~v~~~~~~~~~~~l~~~~~--~~~~  145 (367)
T 1xhc_A           74 GIEIRLAEEAKLIDRGRKVVI-TEKGEVPYDTLVLATGARAREPQ---IKG--KEYLLTLRTIFDADRIKESIE--NSGE  145 (367)
T ss_dssp             TEEEECSCCEEEEETTTTEEE-ESSCEEECSEEEECCCEEECCCC---SBT--GGGEECCCSHHHHHHHHHHHH--HHSE
T ss_pred             CcEEEECCEEEEEECCCCEEE-ECCcEEECCEEEECCCCCCCCCC---CCC--cCCEEEEcCHHHHHHHHHHhh--cCCc
Confidence            999999988999999888888 67788999999999999998877   566  357888888888888877664  2589


Q ss_pred             EEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC
Q 013952          165 AVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK  244 (433)
Q Consensus       165 v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~  244 (433)
                      ++|||+|++|+|+|..|.+.|.+|+++++.+.+++  +++++.+.+.+.+++.||+++++++|++++.      ..+.+.
T Consensus       146 vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~--~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~------~~v~~~  217 (367)
T 1xhc_A          146 AIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG--LDEELSNMIKDMLEETGVKFFLNSELLEANE------EGVLTN  217 (367)
T ss_dssp             EEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT--CCHHHHHHHHHHHHHTTEEEECSCCEEEECS------SEEEET
T ss_pred             EEEECCCHHHHHHHHHHHhCCCEEEEEeCCCeecc--CCHHHHHHHHHHHHHCCCEEEcCCEEEEEEe------eEEEEC
Confidence            99999999999999999999999999999999888  7999999999999999999999999999963      247788


Q ss_pred             CCcEEECCEEEEcccCccChhhhh-cccccCCCcEEeCCCCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHH
Q 013952          245 DGRTLEADIVVVGVGGRPLISLFK-GQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQ  323 (433)
Q Consensus       245 ~g~~i~~d~vi~a~G~~p~~~~~~-~~~~~~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~  323 (433)
                      +|+ +++|.|++|+|++|++++++ .++..+ ++|.||++|||+.|+|||+|||+.....      ...++..|..||+.
T Consensus       218 ~g~-i~~D~vi~a~G~~p~~~ll~~~gl~~~-~gi~Vd~~~~t~~~~IyA~GD~a~~~~~------~~~~~~~A~~qg~~  289 (367)
T 1xhc_A          218 SGF-IEGKVKICAIGIVPNVDLARRSGIHTG-RGILIDDNFRTSAKDVYAIGDCAEYSGI------IAGTAKAAMEQARV  289 (367)
T ss_dssp             TEE-EECSCEEEECCEEECCHHHHHTTCCBS-SSEECCTTSBCSSTTEEECGGGEEBTTB------CCCSHHHHHHHHHH
T ss_pred             CCE-EEcCEEEECcCCCcCHHHHHhCCCCCC-CCEEECCCcccCCCCEEEeEeeeecCCC------CccHHHHHHHHHHH
Confidence            887 99999999999999998764 355555 4599999999999999999999975332      11578899999999


Q ss_pred             HHHHHhccCCCCCccCCCCC-CeEEEeecccceEEecCCCCcEEEEcCCCccccCCcEEEEEEeCCEEEEEEEecCChHH
Q 013952          324 AVKTIMATEGGKTVTGYDYL-PYFYSRAFDLSWQFYGDNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEE  402 (433)
Q Consensus       324 aa~~i~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~g~~~~~  402 (433)
                      +|.||.+..     .+|... |+.+..+++..+..+|.++.+....         .+|.|+++++++|+|++++|+.+. 
T Consensus       290 aa~~i~g~~-----~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~---------~~~~k~~~~~~~ilG~~~~g~~~~-  354 (367)
T 1xhc_A          290 LADILKGEP-----RRYNFKFRSTVFKFGKLQIAIIGNTKGEGKWI---------EDNTKVFYENGKIIGAVVFNDIRK-  354 (367)
T ss_dssp             HHHHHTTCC-----CCCCSSCCEEEEEETTEEEEEEECCSSCEEEE---------ETTEEEEC-----CEEEEESCHHH-
T ss_pred             HHHHhcCCC-----ccCCCCCCceEEEECCceEEEECCCCCCCccc---------ceEEEEEEECCEEEEEEEECChHH-
Confidence            999998743     345554 4444567788888889887654321         468899988899999999996543 


Q ss_pred             HHHHHHHH
Q 013952          403 NKAIAKVA  410 (433)
Q Consensus       403 ~~~~~~~~  410 (433)
                      ...+..+|
T Consensus       355 ~~~~~~~i  362 (367)
T 1xhc_A          355 ATKLEKEI  362 (367)
T ss_dssp             HHHHC---
T ss_pred             HHHHHHHH
Confidence            44443333

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=100.00  E-value=4.1e-49  Score=387.56  Aligned_cols=403  Identities=23%  Similarity=0.353  Sum_probs=305.2

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCC-----CCCCcc-----cccCCC
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTA-----RLPGFH-----VCVGSG   72 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~-----~~~~~~   72 (433)
                      ..+||||||||+||++||..|++.+. ..+|+|||++ ..+|.+|.+++.++......     .+.++.     ..+...
T Consensus        10 ~~~~vvIIGgG~AGl~aA~~L~~~~~-g~~V~lie~~~~~~y~r~~lsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (493)
T 1m6i_A           10 SHVPFLLIGGGTAAFAAARSIRARDP-GARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPP   88 (493)
T ss_dssp             SEEEEEEESCSHHHHHHHHHHHHHST-TCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCG
T ss_pred             CcCCEEEECChHHHHHHHHHHHhcCC-CCeEEEEeCCCCCCCCCCCCCHHhhcCCccchhhcccccccccccccccccch
Confidence            46899999999999999999998843 3459999999 78898888888776543210     000000     000000


Q ss_pred             -CCCCCHhH--HHhCCcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCCCCCCC----CCCEEEec
Q 013952           73 -GERLLPEW--YKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGAD----AKNIFYLR  145 (433)
Q Consensus        73 -~~~~~~~~--~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~----~~~v~~~~  145 (433)
                       .......+  +.+.+++++.++.|+.++++.++|.+.+++++.||+||||||++|+.++.   ++..    ..+++.++
T Consensus        89 ~~~~~~~~l~~~~~~gv~~~~g~~v~~id~~~~~V~~~~g~~i~yd~lviATGs~p~~~~~---~~~~~~~~~~~v~~~~  165 (493)
T 1m6i_A           89 SFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTPRSLSA---IDRAGAEVKSRTTLFR  165 (493)
T ss_dssp             GGSBCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETTSCEEEEEEEEECCCEEECCCHH---HHTSCHHHHHTEEECC
T ss_pred             HhhcchhhhhhhhcCCeEEEcCCEEEEEECCCCEEEECCCCEEECCEEEECCCCCCCCCCC---cccccccccCceEEEc
Confidence             00000111  13568999999999999998999999999999999999999999987663   3321    24688888


Q ss_pred             CHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHh----CCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEE
Q 013952          146 EIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKI----NNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKI  221 (433)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~----~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v  221 (433)
                      +..++..+...+.  .+++++|||+|++|+|+|..|.+    .|.+|+++.+.+.++.+.+++++.+.+.+.+++.||++
T Consensus       166 ~~~d~~~l~~~~~--~~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~~~~l~~~~~~~~~~~l~~~GV~v  243 (493)
T 1m6i_A          166 KIGDFRSLEKISR--EVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKV  243 (493)
T ss_dssp             SHHHHHHHHHHHH--HCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHTTTCEE
T ss_pred             CHHHHHHHHHHhh--cCCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcccccccCCHHHHHHHHHHHHhcCCEE
Confidence            9988888877665  37899999999999999999876    47899999998877777788999999999999999999


Q ss_pred             EcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhhh-cccccC--CCcEEeCCCCCCCCCCeEEcCccc
Q 013952          222 IKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFK-GQVAEN--KGGIETDDFFKTSADDVYAVGDVA  298 (433)
Q Consensus       222 ~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~~-~~~~~~--~g~i~vd~~~~t~~~~vfa~Gd~~  298 (433)
                      ++++.|.++.. +++. ..+.+.+|+++++|.||+|+|++||+++++ .++..+  +|+|.||++||| .|+|||+|||+
T Consensus       244 ~~~~~V~~i~~-~~~~-~~v~l~dG~~i~aD~Vv~a~G~~pn~~l~~~~gl~~~~~~ggi~Vd~~l~t-~~~IyA~GD~a  320 (493)
T 1m6i_A          244 MPNAIVQSVGV-SSGK-LLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQA-RSNIWVAGDAA  320 (493)
T ss_dssp             ECSCCEEEEEE-ETTE-EEEEETTSCEEEESEEEECCCEEECCTTHHHHTCCBCTTTCSEECCTTCEE-ETTEEECGGGE
T ss_pred             EeCCEEEEEEe-cCCe-EEEEECCCCEEECCEEEECCCCCccHHHHHHcCCccccCCCcEEECCCccc-CCCeeEeeeeE
Confidence            99999999986 2333 478889999999999999999999998774 456664  489999999999 69999999999


Q ss_pred             cccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeec-ccceEEecCCCCcEEEEc--------
Q 013952          299 TFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAF-DLSWQFYGDNVGDTVLFG--------  369 (433)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~g~~~~~~~~~~--------  369 (433)
                      ..++...+.. +.++|..|..||+.||.||++..     .+|...|++|+.+. +..+..+|.........|        
T Consensus       321 ~~~~~~~g~~-~~~~~~~A~~qg~~aa~ni~g~~-----~~~~~~~~~~s~~~~~~~~~~~g~~~~~~~~~G~~~~~~~~  394 (493)
T 1m6i_A          321 CFYDIKLGRR-RVEHHDHAVVSGRLAGENMTGAA-----KPYWHQSMFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQ  394 (493)
T ss_dssp             EEEETTTEEE-CCCCHHHHHHHHHHHHHHHTSCC-----CCCCCCCEEEEESSTTCEEEEEECCCTTSCEEEEEECCCTT
T ss_pred             eccCcccCcc-ccchHHHHHHHHHHHHHHhcCCC-----CCcCCcCceeeeeccCcceEEEeccCCCcceEEeecccccc
Confidence            9876655543 45789999999999999999753     67889999999886 444444442110000000        


Q ss_pred             -----------------------------------CC--Cc-cccCCcEEEEEEeCCEEEEEEEecCChHHHHHHHHHHH
Q 013952          370 -----------------------------------DN--DL-ASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVAR  411 (433)
Q Consensus       370 -----------------------------------~~--~~-~~~~~~~~~~~~~~~~l~G~~~~g~~~~~~~~~~~~~~  411 (433)
                                                         +.  +. ......|..+|+++|+|+|+.++| ...++..+..+|+
T Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~li~  473 (493)
T 1m6i_A          395 DNPKSATEQSGTGIRSESETESEASEITIPPSTPAVPQAPVQGEDYGKGVIFYLRDKVVVGIVLWN-IFNRMPIARKIIK  473 (493)
T ss_dssp             CSHHHHHHHHSCSCHHHHSCSCCCC--------------------CCEEEEEEEETTEEEEEEEES-CCSCHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccCCcEEEEEEeCCEEEEEEEec-CcchHHHHHHHHh
Confidence                                               00  00 001234566888999999999997 5577888999999


Q ss_pred             cCCCCCChhhh
Q 013952          412 VQPSVESLDVL  422 (433)
Q Consensus       412 ~~~~~~~~~~~  422 (433)
                      ++.+++++.++
T Consensus       474 ~~~~~~~~~~~  484 (493)
T 1m6i_A          474 DGEQHEDLNEV  484 (493)
T ss_dssp             HCCBCSCSTTG
T ss_pred             CCCCCCCHHHH
Confidence            99999888766

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=100.00  E-value=1.1e-49  Score=394.75  Aligned_cols=389  Identities=20%  Similarity=0.255  Sum_probs=284.9

Q ss_pred             CCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC-----CCCccccccCCCC-------CC--C-CCCccc
Q 013952            3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYE-----RPALSKAYLFPEG-------TA--R-LPGFHV   67 (433)
Q Consensus         3 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~-----~~~~~~~~~~~~~-------~~--~-~~~~~~   67 (433)
                      +.++||+|||||++|+++|.+|++.|++   |+|||++.....     .|..++.++....       ..  . ++....
T Consensus        41 ~~~~dVvIIGgG~aGl~aA~~l~~~G~~---V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~  117 (523)
T 1mo9_A           41 PREYDAIFIGGGAAGRFGSAYLRAMGGR---QLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTE  117 (523)
T ss_dssp             CSCBSEEEECCSHHHHHHHHHHHHTTCC---EEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCCTT
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCC---EEEEeCCCCCCCcccccCcCchHHHHHHHHHHHHHhhhhhcCcHHHHHh
Confidence            3468999999999999999999999987   999999821111     1111111110000       00  0 000000


Q ss_pred             ------ccCCCCCCCCH---hHH-----HhCCcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCCC
Q 013952           68 ------CVGSGGERLLP---EWY-----KEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGV  133 (433)
Q Consensus        68 ------~~~~~~~~~~~---~~~-----~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~  133 (433)
                            ...........   .++     ++.+++++....+..++.  ++|.+. ++++.||+||+|||+.|..|+   +
T Consensus       118 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~--~~v~~~-g~~~~~d~lViATGs~p~~p~---i  191 (523)
T 1mo9_A          118 KVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDN--HTVEAA-GKVFKAKNLILAVGAGPGTLD---V  191 (523)
T ss_dssp             CCCCHHHHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEET--TEEEET-TEEEEBSCEEECCCEECCCCC---S
T ss_pred             hhhhHHHHHHHHHhhhhhhhhhhhhcccccCCcEEEEeeEEEEeeC--CEEEEC-CEEEEeCEEEECCCCCCCCCC---C
Confidence                  00000000022   455     678999984457777875  567765 678999999999999998887   5


Q ss_pred             CCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHH
Q 013952          134 EGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGY  213 (433)
Q Consensus       134 ~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~  213 (433)
                      +|.+..++++..+   +.   +.++..++++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.+.
T Consensus       192 ~G~~~~~v~~~~~---~~---~~l~~~~g~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~-~~~~~~~~l~~~  264 (523)
T 1mo9_A          192 PGVNAKGVFDHAT---LV---EELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLI-KDNETRAYVLDR  264 (523)
T ss_dssp             TTTTSBTEEEHHH---HH---HHCCSCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTC-CSHHHHHHHHHH
T ss_pred             CCcccCcEeeHHH---HH---HHHHhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccccc-ccHHHHHHHHHH
Confidence            7766556775432   22   1222223399999999999999999999999999999999998886 799999999999


Q ss_pred             HHhcCcEEEcCCeEEEEEecCCCcE--EEEEeCCCc-EEECCEEEEcccCccChh-hh-hccccc-CCCcEEeCCCCCCC
Q 013952          214 YANKGIKIIKGTVAVGFTTNADGEV--KEVKLKDGR-TLEADIVVVGVGGRPLIS-LF-KGQVAE-NKGGIETDDFFKTS  287 (433)
Q Consensus       214 l~~~GV~v~~~~~v~~i~~~~~g~~--~~v~~~~g~-~i~~d~vi~a~G~~p~~~-~~-~~~~~~-~~g~i~vd~~~~t~  287 (433)
                      +++.||+++++++|+++..++++++  ..|.+.+|+ ++++|.||+|+|++|+++ ++ ..++.. ++|+|.||++|||+
T Consensus       265 l~~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p~~~~~l~~~gl~~~~~G~i~Vd~~~~t~  344 (523)
T 1mo9_A          265 MKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRSAELAKILGLDLGPKGEVLVNEYLQTS  344 (523)
T ss_dssp             HHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCCEECCHHHHHHHTCCBCTTSCBCCCTTSBCS
T ss_pred             HHhCCcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCCccCCccCHHHcCCccCCCCCEEECCCCccC
Confidence            9999999999999999987444543  467888887 899999999999999997 55 446776 57889999999999


Q ss_pred             CCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCC-----
Q 013952          288 ADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV-----  362 (433)
Q Consensus       288 ~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~-----  362 (433)
                      .|+|||+|||++.+          ..+..|..||++||.||.+...   ...+..+|++++..++++.  +|.++     
T Consensus       345 ~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~---~~~~~~~p~~~~~~~~~a~--vG~~e~~a~~  409 (523)
T 1mo9_A          345 VPNVYAVGDLIGGP----------MEMFKARKSGCYAARNVMGEKI---SYTPKNYPDFLHTHYEVSF--LGMGEEEARA  409 (523)
T ss_dssp             STTEEECGGGGCSS----------CSHHHHHHHHHHHHHHHTTCCC---CCCCCSCCEEEESSSEEEE--EECCHHHHHH
T ss_pred             CCCEEEEeecCCCc----------ccHHHHHHHHHHHHHHHcCCCC---CCCCCCCCeEEECCCceEE--EeCCHHHHHh
Confidence            99999999999765          4567799999999999997431   2347778988876665544  47654     


Q ss_pred             -CcEEEEcCCCcc------------------------ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCC
Q 013952          363 -GDTVLFGDNDLA------------------------SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQP  414 (433)
Q Consensus       363 -~~~~~~~~~~~~------------------------~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~  414 (433)
                       +..+..+..+..                        ....+|.|+++  ++++|+|+|++|+.++++ +.++.+|++++
T Consensus       410 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~  489 (523)
T 1mo9_A          410 AGHEIVTIKMPPDTENGLNVALPASDRTMLYAFGKGTAHMSGFQKIVIDAKTRKVLGAHHVGYGAKDAFQYLNVLIKQGL  489 (523)
T ss_dssp             TTCCEEEEEESCCSTTTTCSSCSCCTTTHHHHHSTTTGGGGCEEEEEEETTTCBEEEEEEEESSCHHHHHHHHHHHHTTC
T ss_pred             CCCCEEEEEEecccccccccccccccccccceEEeecCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCC
Confidence             222322211110                        23457899888  479999999999988875 99999999999


Q ss_pred             CCCChhhh
Q 013952          415 SVESLDVL  422 (433)
Q Consensus       415 ~~~~~~~~  422 (433)
                      |++|+..+
T Consensus       490 t~~~l~~~  497 (523)
T 1mo9_A          490 TVDELGDM  497 (523)
T ss_dssp             BHHHHHTS
T ss_pred             CHHHHHhC
Confidence            99977766

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3e-50  Score=395.06  Aligned_cols=398  Identities=15%  Similarity=0.215  Sum_probs=285.6

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCC-C---CCCCCCccccccCCCC----CCCCCCccccc-----C
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEV-A---PYERPALSKAYLFPEG----TARLPGFHVCV-----G   70 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~-~---~~~~~~~~~~~~~~~~----~~~~~~~~~~~-----~   70 (433)
                      .++||+|||||++|+++|..|++.|.+   |+|||++. .   ....|..++.++....    ......+....     .
T Consensus        10 ~~~dVvVIGgG~aGl~aA~~l~~~g~~---V~liE~~~~GG~~~n~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~   86 (479)
T 2hqm_A           10 KHYDYLVIGGGSGGVASARRAASYGAK---TLLVEAKALGGTCVNVGCVPKKVMWYASDLATRVSHANEYGLYQNLPLDK   86 (479)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTSCC---EEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTBSTTSCCSG
T ss_pred             ccCCEEEEcCCHHHHHHHHHHHHCCCc---EEEEeCCCcCCcCcccCcHHHHHHHHHHHHHHHHHhHHhcCccccccccc
Confidence            368999999999999999999999987   99999981 0   0000111111100000    00000000000     0


Q ss_pred             --CCC----------------CCCCHhHHHhCCcEEEeCceEEEEECCCCEEEeCCCc--EEecceEEEccCCCcccc-C
Q 013952           71 --SGG----------------ERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGL--IFKYQILVIATGSTVLRL-T  129 (433)
Q Consensus        71 --~~~----------------~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~--~~~~d~lvlAtG~~~~~~-~  129 (433)
                        ...                ...+...+++.+++++.+ .+..+++....+...+++  ++.||+||+|||+.|..| +
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~i~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~~  165 (479)
T 2hqm_A           87 EHLTFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVFG-WARFNKDGNVEVQKRDNTTEVYSANHILVATGGKAIFPEN  165 (479)
T ss_dssp             GGCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEE-EEEECTTSCEEEEESSSCCEEEEEEEEEECCCEEECCCTT
T ss_pred             ccCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEeeCCEEEEEeCCCcEEEEEeCEEEEcCCCCCCCCCC
Confidence              000                001123455689999987 566666554456666766  799999999999999877 6


Q ss_pred             CCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHH
Q 013952          130 DFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAF  209 (433)
Q Consensus       130 ~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~  209 (433)
                         +||.+  .++   +..+...+    . ..+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.
T Consensus       166 ---i~g~~--~~~---~~~~~~~l----~-~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~~  231 (479)
T 2hqm_A          166 ---IPGFE--LGT---DSDGFFRL----E-EQPKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLRK-FDECIQNT  231 (479)
T ss_dssp             ---STTGG--GSB---CHHHHHHC----S-SCCSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-SCHHHHHH
T ss_pred             ---CCCcc--ccc---chHHHhcc----c-ccCCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCccccc-cCHHHHHH
Confidence               56542  122   23333222    1 25799999999999999999999999999999999998876 89999999


Q ss_pred             HHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCC-cEEECCEEEEcccCccChhh-h-hccccc-CCCcEEeCCCCC
Q 013952          210 YEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG-RTLEADIVVVGVGGRPLISL-F-KGQVAE-NKGGIETDDFFK  285 (433)
Q Consensus       210 l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g-~~i~~d~vi~a~G~~p~~~~-~-~~~~~~-~~g~i~vd~~~~  285 (433)
                      +.+.+++.||+++++++|.++..++++....+.+.+| +++++|.||+|+|++|++.+ + ..++.. ++|+|.||++||
T Consensus       232 l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~~l~l~~~gl~~~~~G~i~vd~~~~  311 (479)
T 2hqm_A          232 ITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHLGMGSENVGIKLNSHDQIIADEYQN  311 (479)
T ss_dssp             HHHHHHHHTCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCEEECCCSSGGGGTCCBCTTSCBCCCTTCB
T ss_pred             HHHHHHhCCeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCCCCccccChhhcCceECCCCCEeECCCCc
Confidence            9999999999999999999998743443467888888 78999999999999999965 3 345666 478899999999


Q ss_pred             CCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCC-CCCccCCCCCCeEEEeecccceEEecCCCCc
Q 013952          286 TSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEG-GKTVTGYDYLPYFYSRAFDLSWQFYGDNVGD  364 (433)
Q Consensus       286 t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~  364 (433)
                      |+.|+|||+|||++.+          .++..|..||+.+|.||++... .....+|..+|++.+..++++.+  |+++.+
T Consensus       312 t~~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~v--Gl~e~~  379 (479)
T 2hqm_A          312 TNVPNIYSLGDVVGKV----------ELTPVAIAAGRKLSNRLFGPEKFRNDKLDYENVPSVIFSHPEAGSI--GISEKE  379 (479)
T ss_dssp             CSSTTEEECGGGTTSS----------CCHHHHHHHHHHHHHHHHSCGGGTTCCCCCTTCCEEECCSSCEEEE--ECCHHH
T ss_pred             cCCCCEEEEEecCCCc----------ccHHHHHHHHHHHHHHhcCCCccCcccCCCCCCCeEEECCCCeEEE--eCCHHH
Confidence            9999999999998654          5678899999999999997531 01235677788877766665555  655311


Q ss_pred             --------EEEEcC-----CCc---cccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhccc
Q 013952          365 --------TVLFGD-----NDL---ASATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNE  425 (433)
Q Consensus       365 --------~~~~~~-----~~~---~~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  425 (433)
                              .+....     ...   .....+|.|+++  ++|+|+|+|++|+.++++ +.++.+|+.++|++||..+.-+
T Consensus       380 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~  459 (479)
T 2hqm_A          380 AIEKYGKENIKVYNSKFTAMYYAMLSEKSPTRYKIVCAGPNEKVVGLHIVGDSSAEILQGFGVAIKMGATKADFDNCVAI  459 (479)
T ss_dssp             HHHHHCGGGEEEEEEEECCGGGGGCSSCCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCC
T ss_pred             HHhcCCCCcEEEEEEeccHHHHHhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcCC
Confidence                    122211     111   123567889888  479999999999998885 9999999999999988877666


Q ss_pred             CCCccc
Q 013952          426 GLSFAS  431 (433)
Q Consensus       426 ~~~~~~  431 (433)
                      -+++++
T Consensus       460 hPt~~e  465 (479)
T 2hqm_A          460 HPTSAE  465 (479)
T ss_dssp             SSCSGG
T ss_pred             CCChHH
Confidence            666554

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=100.00  E-value=4.9e-50  Score=394.22  Aligned_cols=393  Identities=18%  Similarity=0.209  Sum_probs=273.4

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCC------------CCCCCccccccCCCCC-------CCCCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAP------------YERPALSKAYLFPEGT-------ARLPG   64 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~------------~~~~~~~~~~~~~~~~-------~~~~~   64 (433)
                      .||+|||||||||+.||.++++.|.+   |+|||+. ...            +..|.++|.++.....       ....+
T Consensus        42 dYDviVIG~GpaG~~aA~~aa~~G~k---ValIE~~~~~~~~~k~~lGGtCln~GCIPsK~L~~aa~~~~~~~~~~~~~G  118 (542)
T 4b1b_A           42 DYDYVVIGGGPGGMASAKEAAAHGAR---VLLFDYVKPSSQGTKWGIGGTCVNVGCVPKKLMHYAGHMGSIFKLDSKAYG  118 (542)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTCC---EEEECCCCCCTTCCCCCSSHHHHHHSHHHHHHHHHHHHHHHHHHHTGGGGT
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCe---EEEEeccccccccccCCCCCcccccchHHHHHHHHHHHHHHHHHhhhHhcC
Confidence            48999999999999999999999998   9999975 211            1122333333321110       00001


Q ss_pred             ccccc-CCC--------------CCCCCHhHHHhCCcEEEeCceEEEEECCCCEEE--eC----CCcEEecceEEEccCC
Q 013952           65 FHVCV-GSG--------------GERLLPEWYKEKGIELILSTEIVRADIASKTLL--SA----TGLIFKYQILVIATGS  123 (433)
Q Consensus        65 ~~~~~-~~~--------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~--~~----~~~~~~~d~lvlAtG~  123 (433)
                      +.... ..+              ........+++.+|+++.+...+ ++  .++|.  ..    ++++++++++|||||+
T Consensus       119 i~~~~~~~d~~~~~~~~~~~v~~l~~~~~~~l~~~~V~~i~G~a~f-~~--~~~v~V~~~~~~~~~~~i~a~~iiIATGs  195 (542)
T 4b1b_A          119 WKFDNLKHDWKKLVTTVQSHIRSLNFSYMTGLRSSKVKYINGLAKL-KD--KNTVSYYLKGDLSKEETVTGKYILIATGC  195 (542)
T ss_dssp             EEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEE-EE--TTEEEEEEC--CCCEEEEEEEEEEECCCE
T ss_pred             cccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEE-cC--CCcceEeecccCCceEEEeeeeEEeccCC
Confidence            11000 000              00112234567899999874433 33  34443  22    3357999999999999


Q ss_pred             CccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCC
Q 013952          124 TVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFT  203 (433)
Q Consensus       124 ~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~  203 (433)
                      +|..|+.   .+.....+++.+++.+...        .|++++|||+|++|+|+|..|+++|.+||++.+. ++++. +|
T Consensus       196 ~P~~P~~---~~~~~~~~~ts~~~l~l~~--------lP~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~-~~L~~-~D  262 (542)
T 4b1b_A          196 RPHIPDD---VEGAKELSITSDDIFSLKK--------DPGKTLVVGASYVALECSGFLNSLGYDVTVAVRS-IVLRG-FD  262 (542)
T ss_dssp             EECCCSS---SBTHHHHCBCHHHHTTCSS--------CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEESS-CSSTT-SC
T ss_pred             CCCCCCc---ccCCCccccCchhhhcccc--------CCceEEEECCCHHHHHHHHHHHhcCCeEEEeccc-ccccc-cc
Confidence            9998864   2222222333222222111        5899999999999999999999999999999874 56665 79


Q ss_pred             HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhhh---ccccc-CCCc-E
Q 013952          204 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFK---GQVAE-NKGG-I  278 (433)
Q Consensus       204 ~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~~---~~~~~-~~g~-i  278 (433)
                      +++++.+.+.+++.||++++++.+.++..  .+....+.+.++.++.+|.|++|+|++||++.+.   .++.. ..++ +
T Consensus       263 ~ei~~~l~~~l~~~gi~~~~~~~v~~~~~--~~~~~~v~~~~~~~~~~D~vLvAvGR~Pnt~~L~le~~gv~~~~~~~~i  340 (542)
T 4b1b_A          263 QQCAVKVKLYMEEQGVMFKNGILPKKLTK--MDDKILVEFSDKTSELYDTVLYAIGRKGDIDGLNLESLNMNVNKSNNKI  340 (542)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETCCEEEEEE--ETTEEEEEETTSCEEEESEEEECSCEEESCGGGCGGGTTCCEETTTTEE
T ss_pred             hhHHHHHHHHHHhhcceeecceEEEEEEe--cCCeEEEEEcCCCeEEEEEEEEcccccCCccccCcccceeeecccCceE
Confidence            99999999999999999999999999987  3334578888888999999999999999999774   34555 3444 5


Q ss_pred             EeCCCCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEe
Q 013952          279 ETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFY  358 (433)
Q Consensus       279 ~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  358 (433)
                      .+|+++||++|+|||+|||++...         .+...|.++|+++++|+++....  ...|..+|++.++.|+++.+  
T Consensus       341 ~vd~~~~Ts~p~IyAiGDv~~~~p---------~La~~A~~eg~~aa~~i~g~~~~--~~d~~~iP~~vft~PeiA~V--  407 (542)
T 4b1b_A          341 IADHLSCTNIPSIFAVGDVAENVP---------ELAPVAIKAGEILARRLFKDSDE--IMDYSYIPTSIYTPIEYGAC--  407 (542)
T ss_dssp             CCCTTSBCSSTTEEECTTSBTTCC---------CCHHHHHHHHHHHHHHHHSCCCC--CCCCSSCCEEECSSSCEEEE--
T ss_pred             eccccccccCCCeEEeccccCCch---------hHHHHHHHHHHHHHHHHhcCCCc--ccCCCCCceEEeCCCCeEEE--
Confidence            788999999999999999996532         35677889999999999986432  36888999999888887766  


Q ss_pred             cCCCCc----------EEEEcCCC---------------------ccccCCcEEEEEE---eCCEEEEEEEecCChHHH-
Q 013952          359 GDNVGD----------TVLFGDND---------------------LASATHKFGTYWI---KDGKVVGVFLESGTPEEN-  403 (433)
Q Consensus       359 g~~~~~----------~~~~~~~~---------------------~~~~~~~~~~~~~---~~~~l~G~~~~g~~~~~~-  403 (433)
                      |+++.+          .+......                     ....+.+|.|+++   ++++|||+|++|++++|+ 
T Consensus       408 GlTE~eA~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vKli~~~~~t~~ILGa~ivG~~A~ElI  487 (542)
T 4b1b_A          408 GYSEEKAYELYGKSNVEVFLQEFNNLEISAVHRQKHIRAQKDEYDLDVSSTCLAKLVCLKNEDNRVIGFHYVGPNAGEVT  487 (542)
T ss_dssp             ECCHHHHHHHHCTTTEEEEEC-----------------------------CCCEEEEEETTTTTBEEEEEEESTTHHHHH
T ss_pred             eCCHHHHHHhCCCCcEEEEEeeccchhhhhhhhhhhhhcccccccccCCCceEEEEEEEeCCCCEEEEEEEECCCHHHHH
Confidence            665421          11110000                     0013457888775   579999999999999996 


Q ss_pred             HHHHHHHHcCCCCCChhhhcccCCCccc
Q 013952          404 KAIAKVARVQPSVESLDVLKNEGLSFAS  431 (433)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (433)
                      +.++.||+.++|++||..+.-+-+++++
T Consensus       488 ~~~alAi~~~~t~~dl~~~i~~HPTlsE  515 (542)
T 4b1b_A          488 QGMALALRLKVKKKDFDNCIGIHPTDAE  515 (542)
T ss_dssp             HHHHHHHHTCCBHHHHHHC---------
T ss_pred             HHHHHHHHcCCCHHHHhccCCcCCCHHH
Confidence            9999999999999988766555554443

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=100.00  E-value=2.4e-48  Score=381.60  Aligned_cols=395  Identities=20%  Similarity=0.215  Sum_probs=283.6

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCC----CCCCCccccccCCC-----------CCCCCC--Ccc
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAP----YERPALSKAYLFPE-----------GTARLP--GFH   66 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~----~~~~~~~~~~~~~~-----------~~~~~~--~~~   66 (433)
                      ++||+|||||++|+++|..|++.|++   |+|||++ ...    +..|..++.++...           ....++  ...
T Consensus         6 ~~dvvIIGgG~aGl~aA~~l~~~g~~---V~liE~~~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~g~~~~~~~   82 (474)
T 1zmd_A            6 DADVTVIGSGPGGYVAAIKAAQLGFK---TVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGTDFASRGIEMSEVR   82 (474)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCC---EEEEECSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHSSHHHHTTEEESCEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCe---EEEEeCCCCcCCcccccCccchHHHHHHHHHHHHhhhhhHhhCccccCCCc
Confidence            58999999999999999999999987   9999998 210    00011111111000           000000  000


Q ss_pred             cccCC----------CCCCCCHhHHHhCCcEEEeCceEEEEECCCCEEEeCC-C-cEEecceEEEccCCCccccCCCCCC
Q 013952           67 VCVGS----------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSAT-G-LIFKYQILVIATGSTVLRLTDFGVE  134 (433)
Q Consensus        67 ~~~~~----------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~-~-~~~~~d~lvlAtG~~~~~~~~~~~~  134 (433)
                      .....          .....+..++++.+++++.++ +..++.....|.+.+ + +++.||+||+|||+.|..|+   ++
T Consensus        83 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~-~~~~~~~~~~v~~~~gg~~~~~~d~lViAtGs~p~~p~---i~  158 (474)
T 1zmd_A           83 LNLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGY-GKITGKNQVTATKADGGTQVIDTKNILIATGSEVTPFP---GI  158 (474)
T ss_dssp             ECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESE-EEEEETTEEEEECTTSCEEEEEEEEEEECCCEEECCCT---TC
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEecCCEEEEEecCCCcEEEEeCEEEECCCCCCCCCC---CC
Confidence            00000          000012345667899999984 445665444566655 4 57999999999999998887   45


Q ss_pred             CCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHH
Q 013952          135 GADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYY  214 (433)
Q Consensus       135 g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l  214 (433)
                      |.+..++++.   .++..+    .. .+++++|||+|++|+|+|..|.+.|.+|+++++.+.++++.+++++.+.+.+.+
T Consensus       159 g~~~~~v~t~---~~~~~~----~~-~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l  230 (474)
T 1zmd_A          159 TIDEDTIVSS---TGALSL----KK-VPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRIL  230 (474)
T ss_dssp             CCCSSSEECH---HHHTTC----SS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSCSSCCHHHHHHHHHHH
T ss_pred             CCCcCcEEcH---HHHhhc----cc-cCceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCCcccCHHHHHHHHHHH
Confidence            5544455543   332221    11 478999999999999999999999999999999999988448999999999999


Q ss_pred             HhcCcEEEcCCeEEEEEecCCCcEEEEE-----eCCCcEEECCEEEEcccCccChhh--h-hccccc-CCCcEEeCCCCC
Q 013952          215 ANKGIKIIKGTVAVGFTTNADGEVKEVK-----LKDGRTLEADIVVVGVGGRPLISL--F-KGQVAE-NKGGIETDDFFK  285 (433)
Q Consensus       215 ~~~GV~v~~~~~v~~i~~~~~g~~~~v~-----~~~g~~i~~d~vi~a~G~~p~~~~--~-~~~~~~-~~g~i~vd~~~~  285 (433)
                      ++.||+++++++|.++..++++. ..+.     ..+++++++|.||+|+|++|++++  + ..++.. ++|+|.||++||
T Consensus       231 ~~~Gv~i~~~~~v~~i~~~~~~~-~~v~~~~~~~~~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~  309 (474)
T 1zmd_A          231 QKQGFKFKLNTKVTGATKKSDGK-IDVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQ  309 (474)
T ss_dssp             HHTTCEEECSEEEEEEEECTTSC-EEEEEEETTSCCCEEEEESEEEECSCEEECCTTSSHHHHTCCCCTTSCCCCCTTCB
T ss_pred             HHCCCEEEeCceEEEEEEcCCce-EEEEEEecCCCCceEEEcCEEEECcCCCcCCCcCCchhcCCccCCCCCEEECcCCc
Confidence            99999999999999998733331 3444     346678999999999999999986  3 346666 468899999999


Q ss_pred             CCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCCC--
Q 013952          286 TSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG--  363 (433)
Q Consensus       286 t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~--  363 (433)
                      |+.|+|||+|||+..+          ..+..|..||+.||.||.+..   .+..|..+|++++..+++  ..+|.++.  
T Consensus       310 t~~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~---~~~~~~~~p~~~~~~~~~--a~vG~~e~~a  374 (474)
T 1zmd_A          310 TKIPNIYAIGDVVAGP----------MLAHKAEDEGIICVEGMAGGA---VHIDYNCVPSVIYTHPEV--AWVGKSEEQL  374 (474)
T ss_dssp             CSSTTEEECGGGSSSC----------CCHHHHHHHHHHHHHHHTTCC---CCCCGGGCCEEECSSSEE--EEEECCHHHH
T ss_pred             cCCCCEEEeeecCCCC----------ccHHHHHHHHHHHHHHhcCCC---CcCCCCCCCEEEECCCCe--EEEeCCHHHH
Confidence            9999999999999865          457789999999999999753   225677788877655554  44576642  


Q ss_pred             ----cEEEEcCCCcc--------ccCCcEEEEEEe--CCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhcccCCC
Q 013952          364 ----DTVLFGDNDLA--------SATHKFGTYWIK--DGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLS  428 (433)
Q Consensus       364 ----~~~~~~~~~~~--------~~~~~~~~~~~~--~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  428 (433)
                          ..+..+..+..        ....+|.|++++  +|+|+|+|++|+.++|+ +.++.+|++++|++|+..+.-+-++
T Consensus       375 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~l~~~~~~~Pt  454 (474)
T 1zmd_A          375 KEEGIEYKVGKFPFAANSRAKTNADTDGMVKILGQKSTDRVLGAHILGPGAGEMVNEAALALEYGASCEDIARVCHAHPT  454 (474)
T ss_dssp             HHHTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHHSCCCTTC
T ss_pred             HhcCCCEEEEEEecccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcCCCCC
Confidence                22332222110        235689998884  79999999999998885 9999999999999988776555555


Q ss_pred             cc
Q 013952          429 FA  430 (433)
Q Consensus       429 ~~  430 (433)
                      ++
T Consensus       455 ~~  456 (474)
T 1zmd_A          455 LS  456 (474)
T ss_dssp             TH
T ss_pred             HH
Confidence            44

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=100.00  E-value=6.3e-49  Score=386.12  Aligned_cols=394  Identities=22%  Similarity=0.261  Sum_probs=285.0

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCC----------------CCCCCccc
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGT----------------ARLPGFHV   67 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~   67 (433)
                      ++|||+|||||++|++||.+|++.|++   |+|||++..+..+..+.+.+......                ..+..+..
T Consensus         2 ~~~DVvVIGgG~aGl~aA~~la~~G~~---V~liEk~~~~gG~~~~GG~~~~~gciPsk~l~~~~~~~~~~~~~~~~~g~   78 (476)
T 3lad_A            2 QKFDVIVIGAGPGGYVAAIKSAQLGLK---TALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGI   78 (476)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCC---EEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTE
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCE---EEEEeCCCccCCCCCcCCccccccHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            369999999999999999999999987   99999982111111122111110000                00000000


Q ss_pred             ccCCC-----------------CCCCCHhHHHhCCcEEEeCceEEEEECCCCEEEeCCC--cEEecceEEEccCCCcccc
Q 013952           68 CVGSG-----------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSATG--LIFKYQILVIATGSTVLRL  128 (433)
Q Consensus        68 ~~~~~-----------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~--~~~~~d~lvlAtG~~~~~~  128 (433)
                      .....                 .......++++.+++++.+. +..++.....+...++  .++.||++|+|||+.|..|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~~~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~  157 (476)
T 3lad_A           79 STGEVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGH-GKLLAGKKVEVTAADGSSQVLDTENVILASGSKPVEI  157 (476)
T ss_dssp             ECSCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESE-EEECSTTCEEEECTTSCEEEECCSCEEECCCEEECCC
T ss_pred             ccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeE-EEEecCCEEEEEcCCCceEEEEcCEEEEcCCCCCCCC
Confidence            00000                 00011234556799999974 4446655556666666  5799999999999998876


Q ss_pred             CCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHH
Q 013952          129 TDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAA  208 (433)
Q Consensus       129 ~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~  208 (433)
                      +.   ++.+...+++..+....        ...+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+
T Consensus       158 ~~---~~~~~~~v~~~~~~~~~--------~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~  225 (476)
T 3lad_A          158 PP---APVDQDVIVDSTGALDF--------QNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPA-VDEQVAK  225 (476)
T ss_dssp             TT---SCCCSSSEEEHHHHTSC--------SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-SCHHHHH
T ss_pred             CC---CCCCcccEEechhhhcc--------ccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc-cCHHHHH
Confidence            63   33444566654322211        125789999999999999999999999999999999999885 8999999


Q ss_pred             HHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCC---cEEECCEEEEcccCccChhhh---hccccc-CCCcEEeC
Q 013952          209 FYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG---RTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETD  281 (433)
Q Consensus       209 ~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g---~~i~~d~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd  281 (433)
                      .+.+.+++.||+++++++|.+++.++++  ..+.+.++   +++++|.||+|+|++|+++.+   ..++.. ++|+|.||
T Consensus       226 ~l~~~l~~~Gv~v~~~~~v~~i~~~~~~--~~v~~~~~~g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd  303 (476)
T 3lad_A          226 EAQKILTKQGLKILLGARVTGTEVKNKQ--VTVKFVDAEGEKSQAFDKLIVAVGRRPVTTDLLAADSGVTLDERGFIYVD  303 (476)
T ss_dssp             HHHHHHHHTTEEEEETCEEEEEEECSSC--EEEEEESSSEEEEEEESEEEECSCEEECCTTCCSSCCSCCBCTTSCBCCC
T ss_pred             HHHHHHHhCCCEEEECCEEEEEEEcCCE--EEEEEEeCCCcEEEECCEEEEeeCCcccCCCCCccccCccccCCCCEeeC
Confidence            9999999999999999999999873333  44666544   679999999999999999753   345666 56889999


Q ss_pred             CCCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCC
Q 013952          282 DFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDN  361 (433)
Q Consensus       282 ~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~  361 (433)
                      +++||+.|+|||+|||++.+          ..+..|..||+++|+||.+...   ..+|..+|++.+..++++  .+|++
T Consensus       304 ~~~~t~~~~Iya~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~---~~~~~~~p~~~~~~~~~a--~vGlt  368 (476)
T 3lad_A          304 DYCATSVPGVYAIGDVVRGA----------MLAHKASEEGVVVAERIAGHKA---QMNYDLIPAVIYTHPEIA--GVGKT  368 (476)
T ss_dssp             TTSBCSSTTEEECGGGSSSC----------CCHHHHHHHHHHHHHHHHHCCC---CCCTTCCCEEECSSSEEE--EEECC
T ss_pred             CCcccCCCCEEEEEccCCCc----------ccHHHHHHHHHHHHHHhcCCCc---ccCCCCCCEEEECcCCEE--EeeCC
Confidence            99999999999999999655          4678899999999999997542   256778888776555544  45776


Q ss_pred             C------CcEEEEcCCCcc--------ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhcc
Q 013952          362 V------GDTVLFGDNDLA--------SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKN  424 (433)
Q Consensus       362 ~------~~~~~~~~~~~~--------~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~  424 (433)
                      +      +..+..+..+..        ..+.+|.|+++  ++++|||+|++|++++|+ +.++.||++++|++||..+.-
T Consensus       369 e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~  448 (476)
T 3lad_A          369 EQALKAEGVAINVGVFPFAASGRAMAANDTAGFVKVIADAKTDRVLGVHVIGPSAAELVQQGAIAMEFGTSAEDLGMMVF  448 (476)
T ss_dssp             HHHHHHTTCCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHTSCC
T ss_pred             HHHHHhcCCCEEEEEEeccccchheecCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcCcc
Confidence            5      323333332211        23568999887  579999999999998885 999999999999998777655


Q ss_pred             cCCCcc
Q 013952          425 EGLSFA  430 (433)
Q Consensus       425 ~~~~~~  430 (433)
                      +-++++
T Consensus       449 ~hPt~~  454 (476)
T 3lad_A          449 AHPALS  454 (476)
T ss_dssp             CSSCSH
T ss_pred             CCCChH
Confidence            444443

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=100.00  E-value=2.7e-49  Score=389.09  Aligned_cols=395  Identities=19%  Similarity=0.255  Sum_probs=282.5

Q ss_pred             CCCcCeEEEECCCHHHHHHHHHHHH-cCCCCCcEEEEcC---------CCC----CCCCCCccccccCCCCC----CCCC
Q 013952            2 AEKSFKYVILGGGVSAGYAAREFAK-QGVKPGELAIISK---------EVA----PYERPALSKAYLFPEGT----ARLP   63 (433)
Q Consensus         2 m~~~~dvvIIGgG~aGl~aA~~l~~-~g~~~~~V~lie~---------~~~----~~~~~~~~~~~~~~~~~----~~~~   63 (433)
                      |+.++||+|||||++|++||.+|++ .|++   |+|||+         ...    .+..|..++.++.....    ...+
T Consensus         4 M~~~~dvvVIGgG~aGl~aA~~la~~~G~~---V~liE~~~~~~~~~~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~   80 (495)
T 2wpf_A            4 MSKAFDLVVIGAGSGGLEAGWNAATLYGKR---VAVVDVQTSHGPPFYAALGGTCVNVGCVPKKLMVTGAQYMDHLRESA   80 (495)
T ss_dssp             CCEEEEEEEECCSHHHHHHHHHHHHHHCCC---EEEEESCSSSBTTTBCBTTHHHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccCEEEECCChhHHHHHHHHHHhcCCe---EEEEecccccccccCCCCCCeeecCCcchHHHHHHHHHHHHHHhHHH
Confidence            3346899999999999999999999 9987   999992         210    00001111111100000    0000


Q ss_pred             CcccccCC-----C--------------CCCCCHhHHHhC-CcEEEeCceEEEEECCCCEEEeC---C-----CcEEecc
Q 013952           64 GFHVCVGS-----G--------------GERLLPEWYKEK-GIELILSTEIVRADIASKTLLSA---T-----GLIFKYQ  115 (433)
Q Consensus        64 ~~~~~~~~-----~--------------~~~~~~~~~~~~-~v~~~~~~~v~~i~~~~~~v~~~---~-----~~~~~~d  115 (433)
                      .+......     +              ........+++. +++++.+ .+..++  .++|.+.   +     ++++.||
T Consensus        81 ~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g-~~~~i~--~~~v~v~~~~~~~~~~~~~~~~d  157 (495)
T 2wpf_A           81 GFGWEFDGSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLDFFLG-WGSLES--KNVVVVRETADPKSAVKERLQAD  157 (495)
T ss_dssp             TTTEECCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEEEES-EEEEEE--TTEEEEESSSSTTSCEEEEEEEE
T ss_pred             hcCcccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEe-EEEEee--CCEEEEeecCCccCCCCeEEEcC
Confidence            00000000     0              000112234566 9999998 466665  4667665   4     6689999


Q ss_pred             eEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhC---CCeEEEEc
Q 013952          116 ILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKIN---NIDVSMVY  192 (433)
Q Consensus       116 ~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~---g~~V~li~  192 (433)
                      +||||||++|+.|+   ++|.+  .+++..   ++..+    . ..+++++|||+|++|+|+|..|.+.   |.+|++++
T Consensus       158 ~lViATGs~p~~p~---i~G~~--~~~~~~---~~~~~----~-~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~  224 (495)
T 2wpf_A          158 HILLATGSWPQMPA---IPGIE--HCISSN---EAFYL----P-EPPRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCY  224 (495)
T ss_dssp             EEEECCCEEECCCC---CTTGG--GCEEHH---HHTTC----S-SCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             EEEEeCCCCcCCCC---CCCcc--ccccHH---HHHhh----h-hcCCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEE
Confidence            99999999998877   56542  234332   22221    1 1478999999999999999999999   99999999


Q ss_pred             cCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh---hc
Q 013952          193 PEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF---KG  269 (433)
Q Consensus       193 ~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~---~~  269 (433)
                      +.+.+++. +++++.+.+.+.+++.||+++++++|.++..++++ ...+.+.+|+++++|.||+|+|++|+++.+   ..
T Consensus       225 ~~~~~l~~-~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~-~~~v~~~~G~~i~~D~vv~a~G~~p~~~~L~l~~~  302 (495)
T 2wpf_A          225 RNNLILRG-FDETIREEVTKQLTANGIEIMTNENPAKVSLNTDG-SKHVTFESGKTLDVDVVMMAIGRIPRTNDLQLGNV  302 (495)
T ss_dssp             SSSSSCTT-SCHHHHHHHHHHHHHTTCEEEESCCEEEEEECTTS-CEEEEETTSCEEEESEEEECSCEEECCGGGTGGGT
T ss_pred             cCCccccc-cCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCc-eEEEEECCCcEEEcCEEEECCCCcccccccchhhc
Confidence            99998876 89999999999999999999999999999873223 357888899899999999999999999743   34


Q ss_pred             cccc-CCCcEEeCCCCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEE
Q 013952          270 QVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYS  348 (433)
Q Consensus       270 ~~~~-~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~  348 (433)
                      ++.. ++|+|.||+++||+.|+|||+|||++.+          .++..|..||+++|.||.+....  ...|..+|++.+
T Consensus       303 gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~----------~l~~~A~~~g~~aa~~i~g~~~~--~~~~~~~p~~~~  370 (495)
T 2wpf_A          303 GVKLTPKGGVQVDEFSRTNVPNIYAIGDITDRL----------MLTPVAINEGAALVDTVFGNKPR--KTDHTRVASAVF  370 (495)
T ss_dssp             TCCBCTTSSBCCCTTCBCSSTTEEECGGGGCSC----------CCHHHHHHHHHHHHHHHHSSCCC--CCCCSSCEEEEC
T ss_pred             CccCCCCCCEEECCCCccCCCCEEEEeccCCCc----------cCHHHHHHHHHHHHHHhcCCCCC--cCCCCCCCEEEE
Confidence            5666 4788999999999999999999999643          56788999999999999975321  256777887666


Q ss_pred             eecccceEEecCCCC------cEEEEcCCCc--------cccCCcE-EEEEE--eCCEEEEEEEecCChHHH-HHHHHHH
Q 013952          349 RAFDLSWQFYGDNVG------DTVLFGDNDL--------ASATHKF-GTYWI--KDGKVVGVFLESGTPEEN-KAIAKVA  410 (433)
Q Consensus       349 ~~~~~~~~~~g~~~~------~~~~~~~~~~--------~~~~~~~-~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~  410 (433)
                      ..++++  .+|+++.      ..+.....+.        .....+| .|+++  ++|+|+|+|++|+.++++ +.++.+|
T Consensus       371 ~~~~~a--~vGl~e~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~klv~~~~~~~ilG~~~~g~~a~~~i~~~~~ai  448 (495)
T 2wpf_A          371 SIPPIG--TCGLIEEVAAKEFEKVAVYMSSFTPLMHNISGSKYKKFVAKIVTNHSDGTVLGVHLLGDGAPEIIQAVGVCL  448 (495)
T ss_dssp             CSSCEE--EEECCHHHHHHHSSEEEEEEEEECCTHHHHHSCTTCCEEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHH
T ss_pred             CCCCeE--EEeCCHHHHHhcCCCEEEEEEecCchhhhhhcCCCcEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHH
Confidence            555544  4576642      1222211111        0135689 99888  489999999999999885 9999999


Q ss_pred             HcCCCCCChhhhcccCCCccc
Q 013952          411 RVQPSVESLDVLKNEGLSFAS  431 (433)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~  431 (433)
                      +.++|++||..+.-+-+++++
T Consensus       449 ~~~~t~~~l~~~~~~hPt~~e  469 (495)
T 2wpf_A          449 RLNAKISDFYNTIGVHPTSAE  469 (495)
T ss_dssp             HTTCBHHHHHHSCCCSSCSGG
T ss_pred             HCCCCHHHHhhcccCCCChHH
Confidence            999999988876555555544

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=100.00  E-value=4e-48  Score=379.41  Aligned_cols=393  Identities=23%  Similarity=0.279  Sum_probs=281.6

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCC----CCCCCccccccCCCC----------CCCCC------
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAP----YERPALSKAYLFPEG----------TARLP------   63 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~----~~~~~~~~~~~~~~~----------~~~~~------   63 (433)
                      ++||+|||||++|++||.+|++.|++   |+|||++ ...    +..|..++.++....          ...++      
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~g~~---V~lie~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~g~~~~~~~~   78 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQLGMK---TACVEKRGALGGTCLNVGCIPSKALLHATHLYHDAHANFARYGLMGGEGVT   78 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEECGGGCE
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCe---EEEEeCCCCcCCcCCCcCcHhHHHHHHHHHHHHHHHHHHHhcCcccCCCCc
Confidence            48999999999999999999999987   9999998 210    000111111110000          00000      


Q ss_pred             -Cccccc------CCCCCCCCHhHHHhCCcEEEeCceEEEEECCCCEEEeCCC--cEEecceEEEccCCCccccCCCCCC
Q 013952           64 -GFHVCV------GSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATG--LIFKYQILVIATGSTVLRLTDFGVE  134 (433)
Q Consensus        64 -~~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~--~~~~~d~lvlAtG~~~~~~~~~~~~  134 (433)
                       .+....      .........+++++.+++++.++.+ .++.....|.+.+|  +++.||+||+|||+.|..|+   ++
T Consensus        79 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~-~i~~~~~~v~~~~G~~~~~~~d~lviAtG~~p~~p~---~~  154 (468)
T 2qae_A           79 MDSAKMQQQKERAVKGLTGGVEYLFKKNKVTYYKGEGS-FETAHSIRVNGLDGKQEMLETKKTIIATGSEPTELP---FL  154 (468)
T ss_dssp             ECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEE-EEETTEEEEEETTSCEEEEEEEEEEECCCEEECCBT---TB
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE-EeeCCEEEEEecCCceEEEEcCEEEECCCCCcCCCC---CC
Confidence             000000      0000001234556679999998544 47765555666677  68999999999999998887   45


Q ss_pred             CCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHH
Q 013952          135 GADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYY  214 (433)
Q Consensus       135 g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l  214 (433)
                      |.+..++++   ..++..+    +. .+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.+.+
T Consensus       155 g~~~~~v~t---~~~~~~~----~~-~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~~l~~~l  225 (468)
T 2qae_A          155 PFDEKVVLS---STGALAL----PR-VPKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAPT-LDEDVTNALVGAL  225 (468)
T ss_dssp             CCCSSSEEC---HHHHHTC----SS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHH
T ss_pred             CCCcCceec---hHHHhhc----cc-CCceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCccccc-CCHHHHHHHHHHH
Confidence            554445553   3333322    11 4789999999999999999999999999999999999885 8999999999999


Q ss_pred             -HhcCcEEEcCCeEEEEEecCCCcEEEEEeC--CC--cEEECCEEEEcccCccChhh--h-hccccc-CCCcEEeCCCCC
Q 013952          215 -ANKGIKIIKGTVAVGFTTNADGEVKEVKLK--DG--RTLEADIVVVGVGGRPLISL--F-KGQVAE-NKGGIETDDFFK  285 (433)
Q Consensus       215 -~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~--~g--~~i~~d~vi~a~G~~p~~~~--~-~~~~~~-~~g~i~vd~~~~  285 (433)
                       ++.||+++++++|.+++.++++  ..+.+.  +|  +++++|.||+|+|++|++++  + ..++.. ++|+|.||+++|
T Consensus       226 ~~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~  303 (468)
T 2qae_A          226 AKNEKMKFMTSTKVVGGTNNGDS--VSLEVEGKNGKRETVTCEALLVSVGRRPFTGGLGLDKINVAKNERGFVKIGDHFE  303 (468)
T ss_dssp             HHHTCCEEECSCEEEEEEECSSS--EEEEEECC---EEEEEESEEEECSCEEECCTTSCHHHHTCCBCTTSCBCCCTTSB
T ss_pred             hhcCCcEEEeCCEEEEEEEcCCe--EEEEEEcCCCceEEEECCEEEECCCcccCCCCCCchhcCCccCCCCCEeECCCcc
Confidence             9999999999999999873333  345554  56  67999999999999999986  3 345666 468899999999


Q ss_pred             CCCCCeEEcCcccc-ccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCC--
Q 013952          286 TSADDVYAVGDVAT-FPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV--  362 (433)
Q Consensus       286 t~~~~vfa~Gd~~~-~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~--  362 (433)
                      |+.|+|||+|||+. .+          ..+..|..||+.+|.||.+..   .+..|..+|++.+..+  .+..+|.++  
T Consensus       304 t~~~~IyA~GD~~~~~~----------~~~~~A~~~g~~aa~~i~~~~---~~~~~~~~p~~~~~~~--~~a~vG~~e~~  368 (468)
T 2qae_A          304 TSIPDVYAIGDVVDKGP----------MLAHKAEDEGVACAEILAGKP---GHVNYGVIPAVIYTMP--EVASVGKSEDE  368 (468)
T ss_dssp             CSSTTEEECGGGBSSSC----------SCHHHHHHHHHHHHHHHTTCC---CCCCTTSCCEEECSSS--EEEEEECCHHH
T ss_pred             cCCCCEEEeeccCCCCC----------ccHhHHHHHHHHHHHHHcCCC---ccCCCCCCCEEEECCC--ceEEEeCCHHH
Confidence            99999999999998 44          567789999999999999743   1245667787665544  445557664  


Q ss_pred             ----CcEEEEcCCCcc--------ccCCcEEEEEEe--CCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhcccCC
Q 013952          363 ----GDTVLFGDNDLA--------SATHKFGTYWIK--DGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGL  427 (433)
Q Consensus       363 ----~~~~~~~~~~~~--------~~~~~~~~~~~~--~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  427 (433)
                          +..+..+..+..        ....+|.|++++  +|+|+|+|++|+.++|+ +.++.+|++++|++|+..+.-+-+
T Consensus       369 a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~P  448 (468)
T 2qae_A          369 LKKEGVAYKVGKFPFNANSRAKAVSTEDGFVKVLVDKATDRILGVHIVCTTAGELIGEACLAMEYGASSEDVGRTCHAHP  448 (468)
T ss_dssp             HHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCSS
T ss_pred             HHhcCCCEEEEEEecccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCC
Confidence                222332221110        235689998884  89999999999998885 999999999999998876654444


Q ss_pred             Ccc
Q 013952          428 SFA  430 (433)
Q Consensus       428 ~~~  430 (433)
                      +++
T Consensus       449 t~~  451 (468)
T 2qae_A          449 TMS  451 (468)
T ss_dssp             CTH
T ss_pred             CHH
Confidence            443

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=100.00  E-value=1.4e-48  Score=383.75  Aligned_cols=396  Identities=20%  Similarity=0.230  Sum_probs=281.2

Q ss_pred             CCCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC-----CCCCccccccCC---------CCCCCCCC--
Q 013952            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPY-----ERPALSKAYLFP---------EGTARLPG--   64 (433)
Q Consensus         1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~-----~~~~~~~~~~~~---------~~~~~~~~--   64 (433)
                      +|+.++||+|||||++|+++|.+|++.|++   |+|||++....     ..+..++.++..         .....++.  
T Consensus         2 ~m~~~~dVvIIGaG~aGl~aA~~l~~~G~~---V~liE~~~~~GG~~~~~g~~psk~ll~~~~~~~~~~~~~~~gi~~~~   78 (482)
T 1ojt_A            2 SADAEYDVVVLGGGPGGYSAAFAAADEGLK---VAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKYPE   78 (482)
T ss_dssp             CSEEEEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCCCCC
T ss_pred             CCCCcCCEEEECCCHHHHHHHHHHHhCCCe---EEEEeCCCCCCCceeeecccchHHHHHHHHHHHHHHHHHhCCcccCC
Confidence            355579999999999999999999999987   99999961110     001111111100         00000000  


Q ss_pred             --cccc--cC------CCCCCCCHhHHHhCCcEEEeCceEEEEECCCCEEEeCCC------------cEEecceEEEccC
Q 013952           65 --FHVC--VG------SGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATG------------LIFKYQILVIATG  122 (433)
Q Consensus        65 --~~~~--~~------~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~------------~~~~~d~lvlAtG  122 (433)
                        ....  ..      ......+..++++.+++++.++.+. ++...-.+...++            .+++||++|+|||
T Consensus        79 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-~~~~~v~v~~~~g~~~~~~~~~g~~~~i~ad~lViAtG  157 (482)
T 1ojt_A           79 PELDIDMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQF-LDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAG  157 (482)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEE-EETTEEEEEEEEEEETTEEEEEEEEEEEEEEEEEECCC
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeeEEEE-ccCCEEEEEecCCcccccccccCcceEEEcCEEEECCC
Confidence              0000  00      0000011234567899999986554 4432223333344            5799999999999


Q ss_pred             CCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCC
Q 013952          123 STVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLF  202 (433)
Q Consensus       123 ~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~  202 (433)
                      +.|..|+.  ++ .+ ..++   +..++..+    +. .+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +
T Consensus       158 s~p~~~~~--i~-~~-~~v~---~~~~~~~~----~~-~~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~-~  224 (482)
T 1ojt_A          158 SRVTKLPF--IP-ED-PRII---DSSGALAL----KE-VPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQG-A  224 (482)
T ss_dssp             EEECCCSS--CC-CC-TTEE---CHHHHTTC----CC-CCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-S
T ss_pred             CCCCCCCC--CC-cc-CcEE---cHHHHhcc----cc-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccc-c
Confidence            99987763  33 22 2444   33333222    11 4789999999999999999999999999999999999886 8


Q ss_pred             CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCC----CcEEECCEEEEcccCccChhhh---hcccccC-
Q 013952          203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD----GRTLEADIVVVGVGGRPLISLF---KGQVAEN-  274 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~----g~~i~~d~vi~a~G~~p~~~~~---~~~~~~~-  274 (433)
                      ++++.+.+.+.+++.||+++++++|.+++.+  +....+.+.+    |+++++|.|++|+|++||++++   ..++..+ 
T Consensus       225 ~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~--~~~~~v~~~~~~~~g~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~  302 (482)
T 1ojt_A          225 DRDLVKVWQKQNEYRFDNIMVNTKTVAVEPK--EDGVYVTFEGANAPKEPQRYDAVLVAAGRAPNGKLISAEKAGVAVTD  302 (482)
T ss_dssp             CHHHHHHHHHHHGGGEEEEECSCEEEEEEEE--TTEEEEEEESSSCCSSCEEESCEEECCCEEECGGGTTGGGTTCCCCT
T ss_pred             CHHHHHHHHHHHHhcCCEEEECCEEEEEEEc--CCeEEEEEeccCCCceEEEcCEEEECcCCCcCCCCCChhhcCceeCC
Confidence            9999999999999999999999999999873  2234666666    6789999999999999999873   3456664 


Q ss_pred             CCcEEeCCCCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccc
Q 013952          275 KGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLS  354 (433)
Q Consensus       275 ~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~  354 (433)
                      +|+|.||++|||+.|+|||+|||++.+          .++..|..||+++|.||.+..   ....|..+|++.+..++++
T Consensus       303 ~G~i~vd~~~~t~~~~IyA~GD~~~~~----------~l~~~A~~~g~~aa~~i~g~~---~~~~~~~~p~~~~~~~~~a  369 (482)
T 1ojt_A          303 RGFIEVDKQMRTNVPHIYAIGDIVGQP----------MLAHKAVHEGHVAAENCAGHK---AYFDARVIPGVAYTSPEVA  369 (482)
T ss_dssp             TSCCCCCTTSBCSSTTEEECGGGTCSS----------CCHHHHHHHHHHHHHHHTTCC---CCCCCCCCCEEECSSSCEE
T ss_pred             CCCEeeCCCcccCCCCEEEEEcccCCC----------ccHHHHHHHHHHHHHHHcCCC---ccCCCCCCCEEEEcCCCeE
Confidence            588999999999999999999999854          467789999999999999743   1245667787766555544


Q ss_pred             eEEecCCC------CcEEEEcCCCcc--------ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCC
Q 013952          355 WQFYGDNV------GDTVLFGDNDLA--------SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVE  417 (433)
Q Consensus       355 ~~~~g~~~------~~~~~~~~~~~~--------~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~  417 (433)
                        .+|+++      +..+..+..+..        ....+|.|+++  ++|+|+|+|++|+.++|+ +.++.+|++++|++
T Consensus       370 --~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~  447 (482)
T 1ojt_A          370 --WVGETELSAKASARKITKANFPWAASGRAIANGCDKPFTKLIFDAETGRIIGGGIVGPNGGDMIGEVCLAIEMGCDAA  447 (482)
T ss_dssp             --EEECCHHHHHHHTCCEEEEEEEGGGCHHHHHTTCCSCEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHH
T ss_pred             --EEeCCHHHHHhcCCCEEEEEEEcCcchHHhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHH
Confidence              447664      222333222110        23568999988  689999999999998885 99999999999999


Q ss_pred             ChhhhcccCCCcc
Q 013952          418 SLDVLKNEGLSFA  430 (433)
Q Consensus       418 ~~~~~~~~~~~~~  430 (433)
                      |+..+.-+-++++
T Consensus       448 ~l~~~~~~~Pt~~  460 (482)
T 1ojt_A          448 DIGKTIHPHPTLG  460 (482)
T ss_dssp             HHHTSCCCSSSST
T ss_pred             HHhcCccCCCCHH
Confidence            8877655555544

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=100.00  E-value=6.6e-49  Score=384.38  Aligned_cols=396  Identities=16%  Similarity=0.184  Sum_probs=285.7

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CC----CCCCCCccccccCCCC----------CCCCCCcccc
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VA----PYERPALSKAYLFPEG----------TARLPGFHVC   68 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~----~~~~~~~~~~~~~~~~----------~~~~~~~~~~   68 (433)
                      .+|||+|||||++|+++|..|++.|++   |+|||+. ..    .+..|..++.++....          ......+...
T Consensus         3 ~~~DVvVIGgG~aGl~aA~~l~~~G~~---V~liEk~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~~~~~~~~~~~   79 (466)
T 3l8k_A            3 LKYDVVVIGAGGAGYHGAFRLAKAKYN---VLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLTNIANVKIPLDFSTV   79 (466)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCC---EEEECTTSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHCSCCCCCHHHH
T ss_pred             ccceEEEECCCHHHHHHHHHHHhCCCe---EEEEECCCCCCCcccccCCCchHHHHHHHHHHHHHHhcccCCCCcCHHHH
Confidence            469999999999999999999999987   9999966 21    0111111111100000          0000000000


Q ss_pred             cC--CC---CC--CCCHhHHHhCCcEEEeCceEEEEECCCCEEEeCCCcE--EecceEEEccCCCccccCCCCCCCCCCC
Q 013952           69 VG--SG---GE--RLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLI--FKYQILVIATGSTVLRLTDFGVEGADAK  139 (433)
Q Consensus        69 ~~--~~---~~--~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~--~~~d~lvlAtG~~~~~~~~~~~~g~~~~  139 (433)
                      ..  ..   ..  .....++++.+++++.+ .+..+++....|...++++  +.||+||+|||+.|+.|+   ++|.+  
T Consensus        80 ~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g-~v~~id~~~~~V~~~~g~~~~~~~d~lviAtG~~p~~p~---i~G~~--  153 (466)
T 3l8k_A           80 QDRKDYVQELRFKQHKRNMSQYETLTFYKG-YVKIKDPTHVIVKTDEGKEIEAETRYMIIASGAETAKLR---LPGVE--  153 (466)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCTTEEEESE-EEEEEETTEEEEEETTSCEEEEEEEEEEECCCEEECCCC---CTTGG--
T ss_pred             HHHHHhheeccccchHHHHHHhCCCEEEEe-EEEEecCCeEEEEcCCCcEEEEecCEEEECCCCCccCCC---CCCcc--
Confidence            00  00   00  11223345579999987 7888887767787888888  999999999999998887   46654  


Q ss_pred             CEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCc
Q 013952          140 NIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGI  219 (433)
Q Consensus       140 ~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV  219 (433)
                      +++   +..++..+...+.. .+++++|||+|++|+|+|..|.+.|.+|+++++.+++++..+++++.+.+.+.++   |
T Consensus       154 ~~~---t~~~~~~~~~~l~~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~---v  226 (466)
T 3l8k_A          154 YCL---TSDDIFGYKTSFRK-LPQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALITLEDQDIVNTLLSILK---L  226 (466)
T ss_dssp             GSB---CHHHHHSTTCSCCS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCCHHHHHHHHHHHC---C
T ss_pred             ceE---eHHHHHHHHHHHhh-CCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCCCCCCCHHHHHHHHhcCE---E
Confidence            232   34444322111222 4789999999999999999999999999999999999987449999999988777   9


Q ss_pred             EEEcCCeEEEEEecCCCcEEEEEeC--CCc--EEECCEEEEcccCccChhh--hhccccc-CCCcEEeCCCCCCCCCCeE
Q 013952          220 KIIKGTVAVGFTTNADGEVKEVKLK--DGR--TLEADIVVVGVGGRPLISL--FKGQVAE-NKGGIETDDFFKTSADDVY  292 (433)
Q Consensus       220 ~v~~~~~v~~i~~~~~g~~~~v~~~--~g~--~i~~d~vi~a~G~~p~~~~--~~~~~~~-~~g~i~vd~~~~t~~~~vf  292 (433)
                      +++++++|.++..++++. ..+.+.  +|+  ++++|.|++|+|++|++.+  ...++.. ++| |.||+++||+.|+||
T Consensus       227 ~i~~~~~v~~i~~~~~~~-v~v~~~~~~G~~~~i~~D~vi~a~G~~p~~~l~l~~~gl~~~~~G-i~vd~~~~t~~~~Iy  304 (466)
T 3l8k_A          227 NIKFNSPVTEVKKIKDDE-YEVIYSTKDGSKKSIFTNSVVLAAGRRPVIPEGAREIGLSISKTG-IVVDETMKTNIPNVF  304 (466)
T ss_dssp             CEECSCCEEEEEEEETTE-EEEEECCTTSCCEEEEESCEEECCCEEECCCTTTGGGTCCBCSSS-BCCCTTCBCSSTTEE
T ss_pred             EEEECCEEEEEEEcCCCc-EEEEEEecCCceEEEEcCEEEECcCCCcccccchhhcCceeCCCC-EeECCCccCCCCCEE
Confidence            999999999998733133 357776  565  7999999999999999983  3456776 466 999999999999999


Q ss_pred             EcCccccccccccCcccccccHHHHHHHHHHHHHHHhcc--CCCCCccCCCCCCeEEEeecccceEEecCCC------Cc
Q 013952          293 AVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMAT--EGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV------GD  364 (433)
Q Consensus       293 a~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~--~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~------~~  364 (433)
                      |+|||++.+          +++..|..||++||.||++.  ...  ...+..+|+..+..++++.  +|+++      +.
T Consensus       305 a~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~~~--~~~~~~~p~~~~~~~~~a~--vG~te~~a~~~g~  370 (466)
T 3l8k_A          305 ATGDANGLA----------PYYHAAVRMSIAAANNIMANGMPVD--YVDVKSIPVTIYTIPSLSY--VGILPSKARKMGI  370 (466)
T ss_dssp             ECGGGTCSC----------CSHHHHHHHHHHHHHHHHTTTSCCC--CCCSTTSCEEECSSSCEEE--EECCHHHHHHHTC
T ss_pred             EEEecCCCC----------ccHhHHHHHHHHHHHHHhCCCCCcc--ccCCCCCcEEEECCCCeEE--ecCCHHHHHhCCC
Confidence            999999874          56888999999999999975  221  2567778877765555544  47665      22


Q ss_pred             EEEEcCCCcc--------ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhcccCCCccc
Q 013952          365 TVLFGDNDLA--------SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFAS  431 (433)
Q Consensus       365 ~~~~~~~~~~--------~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (433)
                      .+.....+..        ....+|.|+++  ++|+|||+|++|+.++|+ +.++.||++++|++||..+.-+-+++++
T Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~g~~k~i~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e  448 (466)
T 3l8k_A          371 EIVEAEYNMEEDVSAQIYGQKEGVLKLIFERGSMRLIGAWMIGVHSQYLINELGLAVAYGLNAKQLASFAEQHPSTNE  448 (466)
T ss_dssp             CEEEEEEEGGGSHHHHHHTCCCCEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHCCCCTTSTTH
T ss_pred             CEEEEEEEcccChhheecCCCeEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCcCCHHHHhccccCCCChHH
Confidence            2322222111        24578999888  469999999999999885 9999999999999988887666666554

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=100.00  E-value=1.4e-49  Score=390.88  Aligned_cols=400  Identities=18%  Similarity=0.190  Sum_probs=284.9

Q ss_pred             CCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CC---CCCCCCccccccCCC----CCCCCCCcccccCCC--
Q 013952            3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VA---PYERPALSKAYLFPE----GTARLPGFHVCVGSG--   72 (433)
Q Consensus         3 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~--   72 (433)
                      +.++||+|||||++|++||..|++.|++   |+|||++ ..   .+..|..++.++...    .......+.......  
T Consensus        18 ~~~~dVvIIGgG~aGl~aA~~la~~G~~---V~liE~~~~GG~~~~~gc~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~   94 (478)
T 3dk9_A           18 VASYDYLVIGGGSGGLASARRAAELGAR---AAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKF   94 (478)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTSCCCCCCC
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCe---EEEEecCCCCCcccccCccchHHHHHHHHHHHHHHHHHhcCccCCCCcc
Confidence            3468999999999999999999999987   9999987 20   001111111111000    000000000000000  


Q ss_pred             ---------------CCCCCHhHHHhCCcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCCCCCCC
Q 013952           73 ---------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGAD  137 (433)
Q Consensus        73 ---------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~  137 (433)
                                     ........++..+++++.+ .+..++.....+. .+++++.||+||||||+.|..|....++|.+
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~~~~~~~~v~-~~g~~~~~d~lviAtG~~p~~p~~~~i~G~~  172 (478)
T 3dk9_A           95 NWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRG-HAAFTSDPKPTIE-VSGKKYTAPHILIATGGMPSTPHESQIPGAS  172 (478)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEES-CEEECSCSSCEEE-ETTEEEECSCEEECCCEEECCCCTTTSTTGG
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEeeCCeEEEE-ECCEEEEeeEEEEccCCCCCCCCcCCCCCCc
Confidence                           0011223345679999987 4555665556666 4667899999999999999887211256643


Q ss_pred             CCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhc
Q 013952          138 AKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK  217 (433)
Q Consensus       138 ~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~  217 (433)
                        .+   .+..+...+    . ..+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.+.+++.
T Consensus       173 --~~---~~~~~~~~~----~-~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~~~~~~l~~~  241 (478)
T 3dk9_A          173 --LG---ITSDGFFQL----E-ELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRS-FDSMISTNCTEELENA  241 (478)
T ss_dssp             --GS---BCHHHHTTC----C-SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-SCHHHHHHHHHHHHHT
T ss_pred             --ee---EchHHhhch----h-hcCccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCccccc-cCHHHHHHHHHHHHHC
Confidence              11   222222211    1 14789999999999999999999999999999999998875 8999999999999999


Q ss_pred             CcEEEcCCeEEEEEecCCCcEEEEEeCC---C----cEEECCEEEEcccCccChhhh---hccccc-CCCcEEeCCCCCC
Q 013952          218 GIKIIKGTVAVGFTTNADGEVKEVKLKD---G----RTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKT  286 (433)
Q Consensus       218 GV~v~~~~~v~~i~~~~~g~~~~v~~~~---g----~~i~~d~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t  286 (433)
                      ||++++++.+++++..+++....+.+.+   |    +++++|.|++|+|++|++..+   ..++.. ++|+|.||+++||
T Consensus       242 gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t  321 (478)
T 3dk9_A          242 GVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNT  321 (478)
T ss_dssp             TCEEETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTCCBCCCTTCBC
T ss_pred             CCEEEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeeccccCCCCCCchhcCCeeCCCCCEeeCCCccc
Confidence            9999999999999874455334566664   2    579999999999999999832   445666 6788999999999


Q ss_pred             CCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCCC---
Q 013952          287 SADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG---  363 (433)
Q Consensus       287 ~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~---  363 (433)
                      +.|+|||+|||++.+          ..+..|..||+++|.||++.... ....|..+|++.+..++++.+  |+++.   
T Consensus       322 ~~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~-~~~~~~~~p~~~~~~p~~a~v--Glte~~a~  388 (478)
T 3dk9_A          322 NVKGIYAVGDVCGKA----------LLTPVAIAAGRKLAHRLFEYKED-SKLDYNNIPTVVFSHPPIGTV--GLTEDEAI  388 (478)
T ss_dssp             SSTTEEECGGGGCSS----------CCHHHHHHHHHHHHHHHHSCCTT-CCCCCTTCCEEECCSSCEEEE--ECCHHHHH
T ss_pred             CCCCEEEEEecCCCC----------ccHhHHHHHHHHHHHHHcCCCCc-ccCCCCCCCeEEECCCceEEe--eCCHHHHH
Confidence            999999999999655          56778999999999999976211 236778889887766666555  66642   


Q ss_pred             -----cEEEE-----cCCCc---cccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhcccCC
Q 013952          364 -----DTVLF-----GDNDL---ASATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGL  427 (433)
Q Consensus       364 -----~~~~~-----~~~~~---~~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  427 (433)
                           ..+..     .....   .....+|.|+++  ++++|||+|++|++++|+ +.++.||++++|++||..+.-+-+
T Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~k~i~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hP  468 (478)
T 3dk9_A          389 HKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVCANKEEKVVGIHMQGLGCDEMLQGFAVAVKMGATKADFDNTVAIHP  468 (478)
T ss_dssp             HHHCGGGEEEEEEEECCGGGGGCSSCCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSS
T ss_pred             hhCCCccEEEEEeecCcchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCC
Confidence                 11111     11111   123568999887  579999999999999885 999999999999998877666666


Q ss_pred             Cccc
Q 013952          428 SFAS  431 (433)
Q Consensus       428 ~~~~  431 (433)
                      ++++
T Consensus       469 t~~e  472 (478)
T 3dk9_A          469 TSSE  472 (478)
T ss_dssp             SSGG
T ss_pred             ChHH
Confidence            6554

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=100.00  E-value=4.7e-48  Score=378.85  Aligned_cols=391  Identities=18%  Similarity=0.178  Sum_probs=280.1

Q ss_pred             CCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CC---CCCCCCccccccCCC----CCCCCC---CcccccCC
Q 013952            3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VA---PYERPALSKAYLFPE----GTARLP---GFHVCVGS   71 (433)
Q Consensus         3 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~---~~~~~~~~~~~~~~~----~~~~~~---~~~~~~~~   71 (433)
                      +.++||+|||||++|+++|.+|++.|++   |+|||++ ..   .+..|..++.++...    .....+   ++......
T Consensus         2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~---V~lie~~~~GG~~~~~g~ip~k~l~~~~~~~~~~~~~~~~~g~~~~~~~   78 (467)
T 1zk7_A            2 EPPVQVAVIGSGGAAMAAALKAVEQGAQ---VTLIERGTIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPT   78 (467)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSTTHHHHHHSHHHHHHHHHHHHHHHHHHCCTTTTTSCCCCCC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCE---EEEEeCCCCCccccCCCccchHHHHHHHHHHHHHhhhhhcCCccCCCCc
Confidence            3569999999999999999999999886   9999998 10   000000111000000    000000   00000000


Q ss_pred             CCCC----------------CCHhHHHhC-CcEEEeCceEEEEECCCCEEEeCCC--cEEecceEEEccCCCccccCCCC
Q 013952           72 GGER----------------LLPEWYKEK-GIELILSTEIVRADIASKTLLSATG--LIFKYQILVIATGSTVLRLTDFG  132 (433)
Q Consensus        72 ~~~~----------------~~~~~~~~~-~v~~~~~~~v~~i~~~~~~v~~~~~--~~~~~d~lvlAtG~~~~~~~~~~  132 (433)
                      ....                ...+++++. +++++.+ .+..++.....|.+.++  ++++||+||+|||++|+.|+   
T Consensus        79 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~---  154 (467)
T 1zk7_A           79 IDRSKLLAQQQARVDELRHAKYEGILGGNPAITVVHG-EARFKDDQSLTVRLNEGGERVVMFDRCLVATGASPAVPP---  154 (467)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTHHHHTTCTTEEEEEE-EEEEEETTEEEEEETTSSEEEEECSEEEECCCEEECCCC---
T ss_pred             cCHHHHHHHHHHHHHHHhhhhHHHHHhccCCeEEEEE-EEEEccCCEEEEEeCCCceEEEEeCEEEEeCCCCCCCCC---
Confidence            0000                123445556 9999987 57778866556777777  67999999999999998887   


Q ss_pred             CCCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHH
Q 013952          133 VEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEG  212 (433)
Q Consensus       133 ~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~  212 (433)
                      ++|.+...++   +..++..+    . ..+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++  +++++.+.+.+
T Consensus       155 i~G~~~~~~~---~~~~~~~~----~-~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~--~~~~~~~~l~~  224 (467)
T 1zk7_A          155 IPGLKESPYW---TSTEALAS----D-TIPERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFFR--EDPAIGEAVTA  224 (467)
T ss_dssp             CTTTTTSCCB---CHHHHHHC----S-SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTT--SCHHHHHHHHH
T ss_pred             CCCCCcCcee---cHHHHhcc----c-ccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccCC--CCHHHHHHHHH
Confidence            5665443443   33333222    1 1479999999999999999999999999999999999888  79999999999


Q ss_pred             HHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh---hccccc-CCCcEEeCCCCCCCC
Q 013952          213 YYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSA  288 (433)
Q Consensus       213 ~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~  288 (433)
                      .+++.||+++++++|.++..  ++....+.+. +.++++|.||+|+|++|+++++   ..++.. .+|+|.||+++||+.
T Consensus       225 ~l~~~Gv~i~~~~~v~~i~~--~~~~~~v~~~-~~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~  301 (467)
T 1zk7_A          225 AFRAEGIEVLEHTQASQVAH--MDGEFVLTTT-HGELRADKLLVATGRTPNTRSLALDAAGVTVNAQGAIVIDQGMRTSN  301 (467)
T ss_dssp             HHHHTTCEEETTCCEEEEEE--ETTEEEEEET-TEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBCCCTTCBCSS
T ss_pred             HHHhCCCEEEcCCEEEEEEE--eCCEEEEEEC-CcEEEcCEEEECCCCCcCCCcCCchhcCCcCCCCCCEEECCCcccCC
Confidence            99999999999999999986  3334566666 4589999999999999998743   345666 467799999999999


Q ss_pred             CCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCC------
Q 013952          289 DDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV------  362 (433)
Q Consensus       289 ~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~------  362 (433)
                      |+|||+|||+..+          ..+..|..||+.+|.||.+..   ....+..+|++....+.  +..+|.++      
T Consensus       302 ~~iya~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~---~~~~~~~~p~~~~~~~~--~a~vG~~~~~a~~~  366 (467)
T 1zk7_A          302 PNIYAAGDCTDQP----------QFVYVAAAAGTRAAINMTGGD---AALDLTAMPAVVFTDPQ--VATVGYSEAEAHHD  366 (467)
T ss_dssp             TTEEECSTTBSSC----------CCHHHHHHHHHHHHHHHTTCC---CCCCCTTCEEEECSSSE--EEEEECCHHHHHHT
T ss_pred             CCEEEEeccCCCc----------ccHHHHHHHHHHHHHHHcCCC---cccCCCCCCEEEecCCc--eEEEecCHHHHHhc
Confidence            9999999999865          357789999999999998752   12566677876655444  44457654      


Q ss_pred             CcEEEEcCCCc--------cccCCcEEEEEEe--CCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhcccCCC
Q 013952          363 GDTVLFGDNDL--------ASATHKFGTYWIK--DGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLS  428 (433)
Q Consensus       363 ~~~~~~~~~~~--------~~~~~~~~~~~~~--~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  428 (433)
                      +..+.....+.        .....+|.|++++  +|+|+|+|++|+.++++ +.++.+|++++|++|+..+.-+-++
T Consensus       367 g~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt  443 (467)
T 1zk7_A          367 GIETDSRTLTLDNVPRALANFDTRGFIKLVIEEGSHRLIGVQAVAPEAGELIQTAALAIRNRMTVQELADQLFPYLT  443 (467)
T ss_dssp             TCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTS
T ss_pred             CCCeEEEEEecccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCC
Confidence            22222221111        1235689998884  89999999999998885 9999999999999866554443333

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=100.00  E-value=5e-49  Score=385.12  Aligned_cols=395  Identities=21%  Similarity=0.253  Sum_probs=286.3

Q ss_pred             CCCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCC---CCCCCccccccCCCC----CCCCCCcccccCC-
Q 013952            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAP---YERPALSKAYLFPEG----TARLPGFHVCVGS-   71 (433)
Q Consensus         1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-   71 (433)
                      |++.++||+|||||++|+++|.+|++.|++   |+|||+. ...   +..|..++.++....    ....+.+...... 
T Consensus         1 M~~~~~DVvVIGaG~aGl~aA~~la~~G~~---V~liEk~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~g~~~~~~   77 (463)
T 4dna_A            1 MSAFDYDLFVIGGGSGGVRSGRLAAALGKK---VAIAEEFRYGGTCVIRGCVPKKLYVYASQFAEHFEDAAGFGWTVGES   77 (463)
T ss_dssp             --CCSEEEEEECCSHHHHHHHHHHHTTTCC---EEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEEECCC
T ss_pred             CCCCCCcEEEECcCHHHHHHHHHHHhCCCE---EEEEeCCCCCCcccccCchhhHHHHHHHHHHHHHHHHHhcCcccCCC
Confidence            555579999999999999999999999987   9999996 110   000111111000000    0000000000000 


Q ss_pred             ----------------CCCCCCHhHHHhCCcEEEeCceEEEEECCCCEEEe-CCCcEEecceEEEccCCCcc-ccCCCCC
Q 013952           72 ----------------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLS-ATGLIFKYQILVIATGSTVL-RLTDFGV  133 (433)
Q Consensus        72 ----------------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~-~~~~~~~~d~lvlAtG~~~~-~~~~~~~  133 (433)
                                      .....+..++++.+++++.+ .+..++  .+.+.+ .+++++.||++|+|||+.|. .|+   +
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~i~--~~~v~~~~~~~~~~~d~lviAtG~~p~~~p~---i  151 (463)
T 4dna_A           78 RFDWAKLVAAKEQEIARLEGLYRKGLANAGAEILDT-RAELAG--PNTVKLLASGKTVTAERIVIAVGGHPSPHDA---L  151 (463)
T ss_dssp             EECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEES-CEEESS--SSEEEETTTTEEEEEEEEEECCCEEECCCTT---S
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEee--CCEEEEecCCeEEEeCEEEEecCCCcccCCC---C
Confidence                            00011233455679999987 555543  467777 56788999999999999998 776   5


Q ss_pred             CCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHH
Q 013952          134 EGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGY  213 (433)
Q Consensus       134 ~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~  213 (433)
                      +|.+  .++   +..+...+     ...+++++|||+|++|+|+|..+.+.|.+|+++++.+.+++. +++++.+.+.+.
T Consensus       152 ~G~~--~~~---~~~~~~~~-----~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l~~-~~~~~~~~l~~~  220 (463)
T 4dna_A          152 PGHE--LCI---TSNEAFDL-----PALPESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILSR-FDQDMRRGLHAA  220 (463)
T ss_dssp             TTGG--GCB---CHHHHTTC-----SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHH
T ss_pred             CCcc--ccc---cHHHHhhh-----hcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc-cCHHHHHHHHHH
Confidence            6643  122   22222221     114789999999999999999999999999999999988875 799999999999


Q ss_pred             HHhcCcEEEcCCeEEEEEecCCCcEEEEE-eCCCcEEECCEEEEcccCccChhhh---hccccc-CCCcEEeCCCCCCCC
Q 013952          214 YANKGIKIIKGTVAVGFTTNADGEVKEVK-LKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSA  288 (433)
Q Consensus       214 l~~~GV~v~~~~~v~~i~~~~~g~~~~v~-~~~g~~i~~d~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~  288 (433)
                      +++.||+++++++|.++..++++. ..|. +.+|+ +++|.||+|+|++|++.++   ..++.. ++|+|.||+++||+.
T Consensus       221 l~~~Gv~i~~~~~v~~i~~~~~~~-~~v~~~~~g~-i~aD~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~  298 (463)
T 4dna_A          221 MEEKGIRILCEDIIQSVSADADGR-RVATTMKHGE-IVADQVMLALGRMPNTNGLGLEAAGVRTNELGAIIVDAFSRTST  298 (463)
T ss_dssp             HHHTTCEEECSCCEEEEEECTTSC-EEEEESSSCE-EEESEEEECSCEEESCTTSSTGGGTCCBCTTSCBCCCTTCBCSS
T ss_pred             HHHCCCEEECCCEEEEEEEcCCCE-EEEEEcCCCe-EEeCEEEEeeCcccCCCCCCccccCceECCCCCEeECcCCCCCC
Confidence            999999999999999998743443 4688 88887 9999999999999999863   446666 578899999999999


Q ss_pred             CCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCC------
Q 013952          289 DDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV------  362 (433)
Q Consensus       289 ~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~------  362 (433)
                      |+|||+|||++.+          +++..|..||+++|+||++....  ...+..+|++++..++++.+  |+++      
T Consensus       299 ~~iya~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~~--~~~~~~~p~~~~~~p~~a~v--G~te~~a~~~  364 (463)
T 4dna_A          299 PGIYALGDVTDRV----------QLTPVAIHEAMCFIETEYKNNPT--SPDHDLIATAVFSQPEIGTV--GITEEEAARK  364 (463)
T ss_dssp             TTEEECSGGGSSC----------CCHHHHHHHHHHHHHHHHSSCCC--CCCCSCCCEEECSSSCEEEE--ECCHHHHHHH
T ss_pred             CCEEEEEecCCCC----------CChHHHHHHHHHHHHHHcCCCCc--ccCCCCCCEEEECCCCeEEe--cCCHHHHHHc
Confidence            9999999999854          56788999999999999975432  25777889887766655554  7665      


Q ss_pred             CcEEEEcCCCcc--------ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhcccCCCccc
Q 013952          363 GDTVLFGDNDLA--------SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFAS  431 (433)
Q Consensus       363 ~~~~~~~~~~~~--------~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (433)
                      +..+..+..+..        ..+.+|.|+++  ++++|||+|++|++++|+ +.++.||++++|++||..+.-+-+++++
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e  444 (463)
T 4dna_A          365 FQEIEVYRAEFRPMKATLSGRKEKTIMKLVVNAADRKVVGAHILGHDAGEMAQLLGISLRAGCTKDDFDRTMAVHPTAAE  444 (463)
T ss_dssp             SSEEEEEEEEECCTTHHHHCCCCCEEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTCSGG
T ss_pred             CCCeEEEEEeccccchhhcCCCceEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCCHHH
Confidence            222222222111        23568999887  579999999999999885 9999999999999988776665555544

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=100.00  E-value=1.8e-48  Score=384.05  Aligned_cols=391  Identities=24%  Similarity=0.304  Sum_probs=277.7

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CC----CCCCCCccccccCCCCC-----CCCCCcccccCCC--
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VA----PYERPALSKAYLFPEGT-----ARLPGFHVCVGSG--   72 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~----~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~--   72 (433)
                      ++||+|||||+||++||..|++.|++   |+|||+. ..    .+..|..++.++.....     ..+..+.......  
T Consensus        25 ~~dVvVIGgG~aGl~aA~~la~~G~~---V~liEk~~~~GG~~~~~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~  101 (491)
T 3urh_A           25 AYDLIVIGSGPGGYVCAIKAAQLGMK---VAVVEKRSTYGGTCLNVGCIPSKALLHASEMFHQAQHGLEALGVEVANPKL  101 (491)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCC---EEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHSSGGGTEECCCCEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCCCCCccccccchhhHHHHHHHHHHHHHHhhHhhcCcccCCCcc
Confidence            58999999999999999999999987   9999986 21    00111111111100000     0000000000000  


Q ss_pred             ---------------CCCCCHhHHHhCCcEEEeCceEEEEECCCCEEEeCCC--cEEecceEEEccCCCccccCCCCCCC
Q 013952           73 ---------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSATG--LIFKYQILVIATGSTVLRLTDFGVEG  135 (433)
Q Consensus        73 ---------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~--~~~~~d~lvlAtG~~~~~~~~~~~~g  135 (433)
                                     .......++++.+++++.+. ...+++....|...++  .++.||+||||||+.|.  +   +||
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~--~---ipg  175 (491)
T 3urh_A          102 NLQKMMAHKDATVKSNVDGVSFLFKKNKIDGFQGT-GKVLGQGKVSVTNEKGEEQVLEAKNVVIATGSDVA--G---IPG  175 (491)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESE-EEECSSSEEEEECTTSCEEEEECSEEEECCCEECC--C---BTT
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEecCCEEEEEeCCCceEEEEeCEEEEccCCCCC--C---CCC
Confidence                           00112334566899999874 4445544445555566  57999999999999863  3   233


Q ss_pred             CC----CCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHH
Q 013952          136 AD----AKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYE  211 (433)
Q Consensus       136 ~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~  211 (433)
                      ..    ...+++   ..+...+     ...+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.
T Consensus       176 ~~~~~~~~~~~~---~~~~~~~-----~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~~l~  246 (491)
T 3urh_A          176 VEVAFDEKTIVS---STGALAL-----EKVPASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILGG-MDGEVAKQLQ  246 (491)
T ss_dssp             BCCCCCSSSEEC---HHHHTSC-----SSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSSS-SCHHHHHHHH
T ss_pred             cccccCCeeEEe---hhHhhhh-----hhcCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecccccccc-CCHHHHHHHH
Confidence            32    233443   2222211     125799999999999999999999999999999999999886 7999999999


Q ss_pred             HHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCC---C--cEEECCEEEEcccCccChhhh---hccccc-CCCcEEeCC
Q 013952          212 GYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD---G--RTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDD  282 (433)
Q Consensus       212 ~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~---g--~~i~~d~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~  282 (433)
                      +.+++.||++++++++.++..++++  ..+.+.+   |  +++++|.||+|+|++|+++++   ..++.. ++|+|.||+
T Consensus       247 ~~l~~~gV~v~~~~~v~~i~~~~~~--~~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~  324 (491)
T 3urh_A          247 RMLTKQGIDFKLGAKVTGAVKSGDG--AKVTFEPVKGGEATTLDAEVVLIATGRKPSTDGLGLAKAGVVLDSRGRVEIDR  324 (491)
T ss_dssp             HHHHHTTCEEECSEEEEEEEEETTE--EEEEEEETTSCCCEEEEESEEEECCCCEECCTTSCHHHHTCCBCTTSCBCCCT
T ss_pred             HHHHhCCCEEEECCeEEEEEEeCCE--EEEEEEecCCCceEEEEcCEEEEeeCCccCCCccCchhcCceECCCCCEeECC
Confidence            9999999999999999999873332  3455542   4  579999999999999999853   446666 578899999


Q ss_pred             CCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCC
Q 013952          283 FFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV  362 (433)
Q Consensus       283 ~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~  362 (433)
                      ++||+.|+|||+|||++.+          ..+..|..||+.+|.||++...   ...+..+|++.+..++++  .+|+++
T Consensus       325 ~~~t~~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~---~~~~~~~p~~~~~~p~~a--~vGlte  389 (491)
T 3urh_A          325 HFQTSIAGVYAIGDVVRGP----------MLAHKAEDEGVAVAEIIAGQAG---HVNYDVIPGVVYTQPEVA--SVGKTE  389 (491)
T ss_dssp             TCBCSSTTEEECGGGSSSC----------CCHHHHHHHHHHHHHHHTTSCC---CCCTTCCCEEECSSSCEE--EEECCH
T ss_pred             CCCCCCCCEEEEEecCCCc----------cchhHHHHHHHHHHHHHcCCCc---ccCCCCCCEEEEccCCeE--EEeCCH
Confidence            9999999999999999765          5678899999999999997542   256778888776555544  447765


Q ss_pred             ------CcEEEEcCCCcc--------ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhccc
Q 013952          363 ------GDTVLFGDNDLA--------SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNE  425 (433)
Q Consensus       363 ------~~~~~~~~~~~~--------~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  425 (433)
                            +..+..+..+..        ..+.+|.|+++  ++|+|||+|++|+.++|+ +.++.||++++|++||..+.-+
T Consensus       390 ~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~k~i~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~  469 (491)
T 3urh_A          390 EELKAAGVAYKIGKFPFTANGRARAMLQTDGFVKILADKETDRVLGGHIIGFGAGEMIHEIAVLMEFGGSSEDLGRTCHA  469 (491)
T ss_dssp             HHHHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCC
T ss_pred             HHHHhCCCCEEEEEEecCcchhhhcCCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcCccC
Confidence                  333333332211        23568999887  579999999999999885 9999999999999988776655


Q ss_pred             CCCcc
Q 013952          426 GLSFA  430 (433)
Q Consensus       426 ~~~~~  430 (433)
                      -++++
T Consensus       470 hPt~~  474 (491)
T 3urh_A          470 HPTMS  474 (491)
T ss_dssp             SSCTT
T ss_pred             CCChH
Confidence            44443

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=100.00  E-value=8e-48  Score=379.92  Aligned_cols=394  Identities=19%  Similarity=0.184  Sum_probs=287.5

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHc---CCCCCcEEEEcCCCC----CCCCCCccccccCC---------CCCCCCCCcccc
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQ---GVKPGELAIISKEVA----PYERPALSKAYLFP---------EGTARLPGFHVC   68 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~---g~~~~~V~lie~~~~----~~~~~~~~~~~~~~---------~~~~~~~~~~~~   68 (433)
                      ++||+|||||++|++||.+|++.   |++   |+|||++..    ....+..++.++..         .....++.+...
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~---V~liE~~~~GG~~~~~g~~psk~l~~~a~~~~~~~~~~~~g~~~~~~~   78 (499)
T 1xdi_A            2 VTRIVILGGGPAGYEAALVAATSHPETTQ---VTVIDCDGIGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDD   78 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTTEE---EEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC-----
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCcCE---EEEEeCCCcCCcccCcCccchHHHHHHHHHHHHHHHHHhCCCccccCC
Confidence            38999999999999999999998   876   999999820    00011111111110         000011000000


Q ss_pred             cCCC--------------CCCCCHhHHHhCCcEEEeCceEEEEECC----CC--EEEeCCCc--EEecceEEEccCCCcc
Q 013952           69 VGSG--------------GERLLPEWYKEKGIELILSTEIVRADIA----SK--TLLSATGL--IFKYQILVIATGSTVL  126 (433)
Q Consensus        69 ~~~~--------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~----~~--~v~~~~~~--~~~~d~lvlAtG~~~~  126 (433)
                      ...+              ....+.+++++.+++++.+ .+..+++.    ++  .|...+++  ++.||+||+|||+.|.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~i~~~~~~~~~~~~V~~~~g~~~~~~~d~lviATGs~p~  157 (499)
T 1xdi_A           79 AKISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAG-RGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPR  157 (499)
T ss_dssp             -CBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEES-EEEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEEC
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEecCcccCCCCEEEEEeCCCcEEEEEeCEEEEcCCCCCC
Confidence            0000              0001245566789999998 47777762    13  34455665  7999999999999998


Q ss_pred             ccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHH
Q 013952          127 RLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADI  206 (433)
Q Consensus       127 ~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~  206 (433)
                      .|+   ++|.+..++++..+..+..        ..+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++
T Consensus       158 ~p~---i~g~~~~~v~~~~~~~~~~--------~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~  225 (499)
T 1xdi_A          158 ILP---SAQPDGERILTWRQLYDLD--------ALPDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLPY-EDADA  225 (499)
T ss_dssp             CCG---GGCCCSSSEEEGGGGGGCS--------SCCSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSSCC-SSHHH
T ss_pred             CCC---CCCCCcCcEEehhHhhhhh--------ccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc-cCHHH
Confidence            887   4666555677655443321        14789999999999999999999999999999999999887 89999


Q ss_pred             HHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhh--h-hccccc-CCCcEEeCC
Q 013952          207 AAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISL--F-KGQVAE-NKGGIETDD  282 (433)
Q Consensus       207 ~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~--~-~~~~~~-~~g~i~vd~  282 (433)
                      .+.+.+.+++.||+++++++|+++..++ +. ..+.+.+|+++++|.||+|+|++|++++  + ..++.. ++|+|.||+
T Consensus       226 ~~~l~~~l~~~GV~i~~~~~V~~i~~~~-~~-v~v~~~~g~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~  303 (499)
T 1xdi_A          226 ALVLEESFAERGVRLFKNARAASVTRTG-AG-VLVTMTDGRTVEGSHALMTIGSVPNTSGLGLERVGIQLGRGNYLTVDR  303 (499)
T ss_dssp             HHHHHHHHHHTTCEEETTCCEEEEEECS-SS-EEEEETTSCEEEESEEEECCCEEECCSSSCTTTTTCCCBTTTBCCCCS
T ss_pred             HHHHHHHHHHCCCEEEeCCEEEEEEEeC-CE-EEEEECCCcEEEcCEEEECCCCCcCCCcCCchhcCceECCCCCEEECC
Confidence            9999999999999999999999998732 23 4677888889999999999999999987  3 335666 458899999


Q ss_pred             CCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCC
Q 013952          283 FFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV  362 (433)
Q Consensus       283 ~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~  362 (433)
                      +|||+.|+|||+|||++.+          ..+..|..||+++|.||.+...  ....|..+|++++..++  +..+|.++
T Consensus       304 ~~~t~~~~IyA~GD~~~~~----------~l~~~A~~~g~~aa~~i~g~~~--~~~~~~~~p~~~~~~~~--~a~vG~~e  369 (499)
T 1xdi_A          304 VSRTLATGIYAAGDCTGLL----------PLASVAAMQGRIAMYHALGEGV--SPIRLRTVAATVFTRPE--IAAVGVPQ  369 (499)
T ss_dssp             SSBCSSTTEEECSGGGTSC----------SCHHHHHHHHHHHHHHHTTCCC--CCCCGGGCEEEECSSSE--EEEEESCH
T ss_pred             CcccCCCCEEEEeccCCCc----------ccHHHHHHHHHHHHHHhcCCCC--ccCCCCCCcEEEEecCC--ceEeCCCH
Confidence            9999999999999999865          4577899999999999997521  12557778887755454  44557665


Q ss_pred             C------cEEEEcCCCc--------cccCCcEEEEEEe--CCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhccc
Q 013952          363 G------DTVLFGDNDL--------ASATHKFGTYWIK--DGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNE  425 (433)
Q Consensus       363 ~------~~~~~~~~~~--------~~~~~~~~~~~~~--~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  425 (433)
                      .      ..+..+..+.        .....+|.|++++  +|+|+|++++|+.++++ +.++.+|++++|++|+..+.-+
T Consensus       370 ~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~l~~~~~~  449 (499)
T 1xdi_A          370 SVIDAGSVAARTIMLPLRTNARAKMSEMRHGFVKIFCRRSTGVVIGGVVVAPIASELILPIAVAVQNRITVNELAQTLAV  449 (499)
T ss_dssp             HHHHHTSSCEEEEEEESTTSHHHHHTTCSSCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHTSBCC
T ss_pred             HHHHhCCCCEEEEEEecCcccceeecCCCceEEEEEEECCCCEEEEEEEECCchHHHHHHHHHHHHCCCCHHHHhccccc
Confidence            2      2232222111        1235689998884  79999999999998884 9999999999999988776555


Q ss_pred             CCCcc
Q 013952          426 GLSFA  430 (433)
Q Consensus       426 ~~~~~  430 (433)
                      -++++
T Consensus       450 ~Pt~~  454 (499)
T 1xdi_A          450 YPSLS  454 (499)
T ss_dssp             SSSTH
T ss_pred             CCCch
Confidence            55544

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=100.00  E-value=1.1e-47  Score=373.78  Aligned_cols=393  Identities=19%  Similarity=0.194  Sum_probs=283.5

Q ss_pred             CCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC-----CCCccccccCCCC----CC-CCCCcccccCC-
Q 013952            3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYE-----RPALSKAYLFPEG----TA-RLPGFHVCVGS-   71 (433)
Q Consensus         3 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~-----~~~~~~~~~~~~~----~~-~~~~~~~~~~~-   71 (433)
                      +.++||+|||||++|+++|.+|++.|++   |+|||++. ...     .|.+++.++....    .. ..+.+...... 
T Consensus         2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~---V~liE~~~-~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~~g~~~~~~   77 (450)
T 1ges_A            2 TKHYDYIAIGGGSGGIASINRAAMYGQK---CALIEAKE-LGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTIN   77 (450)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHTTTCC---EEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEE
T ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCe---EEEEcCCC-CCCcccccCccChHHHHHHHHHHHHHHHHHHhcCccCCCC
Confidence            3568999999999999999999999887   99999981 111     0111111110000    00 00000000000 


Q ss_pred             --C--------------CCCCCHhHHHhCCcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCCCCC
Q 013952           72 --G--------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEG  135 (433)
Q Consensus        72 --~--------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g  135 (433)
                        +              ....+...+.+.+++++.+. +..++.  ++|.+ +++++.||+||+|||++|..|+   +||
T Consensus        78 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~i~~--~~v~~-~g~~~~~d~lviAtGs~p~~p~---i~g  150 (450)
T 1ges_A           78 KFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGF-ARFVDA--KTLEV-NGETITADHILIATGGRPSHPD---IPG  150 (450)
T ss_dssp             EECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESC-CEEEET--TEEEE-TTEEEEEEEEEECCCEEECCCC---STT
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeE-EEEecC--CEEEE-CCEEEEeCEEEECCCCCCCCCC---CCC
Confidence              0              00011233466899999984 455654  56777 6778999999999999998877   465


Q ss_pred             CCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHH
Q 013952          136 ADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYA  215 (433)
Q Consensus       136 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~  215 (433)
                      .+  .+   .+..++..+    . ..+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.+.++
T Consensus       151 ~~--~~---~~~~~~~~~----~-~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~  219 (450)
T 1ges_A          151 VE--YG---IDSDGFFAL----P-ALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPS-FDPMISETLVEVMN  219 (450)
T ss_dssp             GG--GS---BCHHHHHHC----S-SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHHH
T ss_pred             cc--ce---ecHHHhhhh----h-hcCCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchhhh-hhHHHHHHHHHHHH
Confidence            42  12   233333322    1 14789999999999999999999999999999999988875 89999999999999


Q ss_pred             hcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhh--h-hccccc-CCCcEEeCCCCCCCCCCe
Q 013952          216 NKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISL--F-KGQVAE-NKGGIETDDFFKTSADDV  291 (433)
Q Consensus       216 ~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~--~-~~~~~~-~~g~i~vd~~~~t~~~~v  291 (433)
                      +.||+++++++|.+++.++++ ...+.+.+|+++++|.||+|+|++|+++.  + ..++.. ++|+|.||+++||+.|+|
T Consensus       220 ~~Gv~i~~~~~v~~i~~~~~~-~~~v~~~~g~~i~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~~~t~~~~I  298 (450)
T 1ges_A          220 AEGPQLHTNAIPKAVVKNTDG-SLTLELEDGRSETVDCLIWAIGREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGI  298 (450)
T ss_dssp             HHSCEEECSCCEEEEEECTTS-CEEEEETTSCEEEESEEEECSCEEESCTTSCHHHHTCCBCTTSCBCCCTTSBCSSTTE
T ss_pred             HCCCEEEeCCEEEEEEEeCCc-EEEEEECCCcEEEcCEEEECCCCCcCCCCCCchhcCceECCCCCEeECCCCccCCCCE
Confidence            999999999999999873333 34688889989999999999999999973  2 346666 478899999999999999


Q ss_pred             EEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCCC--------
Q 013952          292 YAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG--------  363 (433)
Q Consensus       292 fa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~--------  363 (433)
                      ||+|||++.+          .++..|..||+.+|.||.+.... ....|..+|++++..++++.+  |+++.        
T Consensus       299 yA~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~-~~~~~~~~p~~~~~~~~~a~v--G~~e~~a~~~~g~  365 (450)
T 1ges_A          299 YAVGDNTGAV----------ELTPVAVAAGRRLSERLFNNKPD-EHLDYSNIPTVVFSHPPIGTV--GLTEPQAREQYGD  365 (450)
T ss_dssp             EECSGGGTSC----------CCHHHHHHHHHHHHHHHHTTCTT-CCCCCSSCCEEECCSSCEEEE--ECCHHHHHHHHCG
T ss_pred             EEEeccCCCC----------ccHHHHHHHHHHHHHHHcCCCCc-ccCCCCCCCeEEECCCceEEE--eCCHHHHHhcCCC
Confidence            9999998754          56788999999999999974321 114677788877766665555  65431        


Q ss_pred             cEEEEcCCCc--------cccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhcccCCCccc
Q 013952          364 DTVLFGDNDL--------ASATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFAS  431 (433)
Q Consensus       364 ~~~~~~~~~~--------~~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (433)
                      ..+.....+.        .....+|.|+++  ++++|+|+|++|+.++++ +.++.+|+.++|++||..+.-+-+++++
T Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e  444 (450)
T 1ges_A          366 DQVKVYKSSFTAMYTAVTTHRQPCRMKLVCVGSEEKIVGIHGIGFGMDEMLQGFAVALKMGATKKDFDNTVAIHPTAAE  444 (450)
T ss_dssp             GGEEEEEEEEECHHHHTSSSCCEEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGG
T ss_pred             CcEEEEEEECchhhHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCChHH
Confidence            1122211111        123457888887  489999999999999885 9999999999999988877666666554

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=100.00  E-value=6.6e-48  Score=377.50  Aligned_cols=392  Identities=21%  Similarity=0.242  Sum_probs=279.2

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC-----CCCccccccCC----------CCCCCCC-Ccccc
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYE-----RPALSKAYLFP----------EGTARLP-GFHVC   68 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~-----~~~~~~~~~~~----------~~~~~~~-~~~~~   68 (433)
                      ++||+|||||++|+++|..|++.|++   |+|||++ ....     .+..++.++..          .....++ .....
T Consensus         3 ~~dvvIIGaG~aGl~aA~~l~~~G~~---V~liE~~-~~gG~~~~~g~~psk~ll~~~~~~~~~~~~~~~~g~~~~~~~~   78 (464)
T 2a8x_A            3 HYDVVVLGAGPGGYVAAIRAAQLGLS---TAIVEPK-YWGGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGISGEVTFD   78 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHHHTTTTTEEECCEEC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCe---EEEEeCC-CCCCcccccCchhhHHHHHHHHHHHHHHHHHHhcCCCCCCccC
Confidence            68999999999999999999999987   9999998 1100     00111111100          0000000 00000


Q ss_pred             cC----------CCCCCCCHhHHHhCCcEEEeCceEEEEECCCCEEEeCCC--cEEecceEEEccCCCccccCCCCCCCC
Q 013952           69 VG----------SGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATG--LIFKYQILVIATGSTVLRLTDFGVEGA  136 (433)
Q Consensus        69 ~~----------~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~--~~~~~d~lvlAtG~~~~~~~~~~~~g~  136 (433)
                      ..          ......+.+.+++.+++++.++.+. ++.....+.+.++  +++.||+||+|||+.|+.|+.   ++.
T Consensus        79 ~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~~g~~~~-id~~~v~V~~~~G~~~~~~~d~lViAtG~~~~~~~~---~g~  154 (464)
T 2a8x_A           79 YGIAYDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTF-ADANTLLVDLNDGGTESVTFDNAIIATGSSTRLVPG---TSL  154 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEE-SSSSEEEEEETTSCCEEEEEEEEEECCCEEECCCTT---CCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE-ecCCeEEEEeCCCceEEEEcCEEEECCCCCCCCCCC---CCC
Confidence            00          0000012345567899999986543 4433334555666  689999999999999988773   554


Q ss_pred             CCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHh
Q 013952          137 DAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYAN  216 (433)
Q Consensus       137 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~  216 (433)
                      +.. ++   +..++..+    +. .+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.+++
T Consensus       155 ~~~-~~---~~~~~~~~----~~-~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~  224 (464)
T 2a8x_A          155 SAN-VV---TYEEQILS----RE-LPKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALPN-EDADVSKEIEKQFKK  224 (464)
T ss_dssp             BTT-EE---CHHHHHTC----SS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHH
T ss_pred             Cce-EE---ecHHHhhc----cc-cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCccccc-cCHHHHHHHHHHHHH
Confidence            322 43   33333322    11 4789999999999999999999999999999999999885 899999999999999


Q ss_pred             cCcEEEcCCeEEEEEecCCCcEEEEEeC-CC--cEEECCEEEEcccCccChhh--h-hccccc-CCCcEEeCCCCCCCCC
Q 013952          217 KGIKIIKGTVAVGFTTNADGEVKEVKLK-DG--RTLEADIVVVGVGGRPLISL--F-KGQVAE-NKGGIETDDFFKTSAD  289 (433)
Q Consensus       217 ~GV~v~~~~~v~~i~~~~~g~~~~v~~~-~g--~~i~~d~vi~a~G~~p~~~~--~-~~~~~~-~~g~i~vd~~~~t~~~  289 (433)
                      .||+++++++|.++..++++  ..+.+. +|  +++++|.|++|+|++||+++  + ..++.. ++|+|.||++|||+.|
T Consensus       225 ~gv~i~~~~~v~~i~~~~~~--~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~t~~~  302 (464)
T 2a8x_A          225 LGVTILTATKVESIADGGSQ--VTVTVTKDGVAQELKAEKVLQAIGFAPNVEGYGLDKAGVALTDRKAIGVDDYMRTNVG  302 (464)
T ss_dssp             HTCEEECSCEEEEEEECSSC--EEEEEESSSCEEEEEESEEEECSCEEECCSSSCHHHHTCCBCTTSSBCCCTTSBCSST
T ss_pred             cCCEEEeCcEEEEEEEcCCe--EEEEEEcCCceEEEEcCEEEECCCCCccCCCCCchhcCCccCCCCCEeECcCCccCCC
Confidence            99999999999999873222  345554 56  67999999999999999986  3 345666 4688999999999999


Q ss_pred             CeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCc-cCCCCCCeEEEeecccceEEecCCC------
Q 013952          290 DVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTV-TGYDYLPYFYSRAFDLSWQFYGDNV------  362 (433)
Q Consensus       290 ~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~g~~~------  362 (433)
                      +|||+|||++.+          ..+..|..||+.+|.||.+...  .+ ..|..+|++.+..++  +..+|.++      
T Consensus       303 ~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~--~~~~~~~~~p~~~~~~~~--~a~vG~~e~~a~~~  368 (464)
T 2a8x_A          303 HIYAIGDVNGLL----------QLAHVAEAQGVVAAETIAGAET--LTLGDHRMLPRATFCQPN--VASFGLTEQQARNE  368 (464)
T ss_dssp             TEEECGGGGCSS----------CSHHHHHHHHHHHHHHHHTCCC--CCCCCGGGSCEEECSSSE--EEEEECCHHHHHHT
T ss_pred             CEEEeECcCCCc----------cCHHHHHHHHHHHHHHhcCCCC--cccCCCCCCCEEEECCCC--eEEEcCCHHHHHhc
Confidence            999999999864          4577899999999999997321  12 456678877655444  44557654      


Q ss_pred             CcEEEEcCCCcc--------ccCCcEEEEEE--eCCEEEEEEEecCChHH-HHHHHHHHHcCCCCCChhhhcccCCCcc
Q 013952          363 GDTVLFGDNDLA--------SATHKFGTYWI--KDGKVVGVFLESGTPEE-NKAIAKVARVQPSVESLDVLKNEGLSFA  430 (433)
Q Consensus       363 ~~~~~~~~~~~~--------~~~~~~~~~~~--~~~~l~G~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (433)
                      +..+..+..+..        ....+|.|+++  ++|+|+|+|++|+.++| ++.++.+|++++|++|+..+.-+-++|+
T Consensus       369 g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~  447 (464)
T 2a8x_A          369 GYDVVVAKFPFTANAKAHGVGDPSGFVKLVADAKHGELLGGHLVGHDVAELLPELTLAQRWDLTASELARNVHTHPTMS  447 (464)
T ss_dssp             TCCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTTEEEEEEEEETTGGGGHHHHHHHHHTTCBHHHHTTSCCCTTCTT
T ss_pred             CCCEEEEEEEcchhhhhhhcCCCcEEEEEEEECCCCEEEEEEEECcCHHHHHHHHHHHHHCCCCHHHHhhCccCCCChH
Confidence            222332222110        23568999888  48999999999999887 5999999999999998876655544444

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=100.00  E-value=4.3e-48  Score=380.40  Aligned_cols=397  Identities=22%  Similarity=0.285  Sum_probs=280.0

Q ss_pred             CCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCC----CCCCCccccccCCCCC-----CCCC--Ccccc-
Q 013952            2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAP----YERPALSKAYLFPEGT-----ARLP--GFHVC-   68 (433)
Q Consensus         2 m~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~----~~~~~~~~~~~~~~~~-----~~~~--~~~~~-   68 (433)
                      |+.++||+|||||++|+++|..|++.|++   |+|||++ ...    ...|..++.++.....     ....  ++... 
T Consensus         2 M~~~~dVvIIGgG~aGl~aA~~l~~~G~~---V~liE~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~gi~~~~   78 (478)
T 1v59_A            2 INKSHDVVIIGGGPAGYVAAIKAAQLGFN---TACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNG   78 (478)
T ss_dssp             EEEEEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEECS
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCCcCCccceeccHHHHHHHHHHHHHHHHHHHHHhcCcccCC
Confidence            44578999999999999999999999987   9999996 210    0000111111100000     0000  00000 


Q ss_pred             -cCCC--------------CCCCCHhHHHhCCcEEEeCceEEEEECCCCEEEeCCC--cE------EecceEEEccCCCc
Q 013952           69 -VGSG--------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSATG--LI------FKYQILVIATGSTV  125 (433)
Q Consensus        69 -~~~~--------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~--~~------~~~d~lvlAtG~~~  125 (433)
                       ...+              ....+..++++.+++++.++.+. .+.....|.+.++  ++      ++||+||+|||+.|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-~~~~~v~V~~~~G~~~~~~~~~~i~~d~lViAtGs~p  157 (478)
T 1v59_A           79 DIKINVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSF-EDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEV  157 (478)
T ss_dssp             CEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEE-SSSSEEEEECCTTCTTCCSSCEEEEEEEEEECCCEEE
T ss_pred             CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE-ccCCeEEEEecCCCcccccccceEEeCEEEECcCCCC
Confidence             0000              00012345567899999986654 2322223445555  56      99999999999988


Q ss_pred             cccCCCCCCCCCC--CCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCC
Q 013952          126 LRLTDFGVEGADA--KNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFT  203 (433)
Q Consensus       126 ~~~~~~~~~g~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~  203 (433)
                      +.+     |+...  ..++   +..++..+    +. .+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. ++
T Consensus       158 ~~~-----~g~~~~~~~v~---~~~~~~~~----~~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~  223 (478)
T 1v59_A          158 TPF-----PGIEIDEEKIV---SSTGALSL----KE-IPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGAS-MD  223 (478)
T ss_dssp             CCC-----TTCCCCSSSEE---CHHHHTTC----SS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSS-SC
T ss_pred             CCC-----CCCCCCCceEE---cHHHHHhh----hc-cCceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCccccc-cC
Confidence            432     33222  2344   33333322    11 4789999999999999999999999999999999999884 89


Q ss_pred             HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC-----CCcEEECCEEEEcccCccChh--hh-hccccc-C
Q 013952          204 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK-----DGRTLEADIVVVGVGGRPLIS--LF-KGQVAE-N  274 (433)
Q Consensus       204 ~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~-----~g~~i~~d~vi~a~G~~p~~~--~~-~~~~~~-~  274 (433)
                      +++.+.+.+.+++.||+++++++|.++...+++....+.+.     +++++++|.||+|+|++|+++  ++ ..++.. +
T Consensus       224 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~l~~~g~~~~~  303 (478)
T 1v59_A          224 GEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYIAGLGAEKIGLEVDK  303 (478)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCEEECCTTSCTTTTTCCBCT
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCCCcCCCCCCchhcCceeCC
Confidence            99999999999999999999999999986213334456654     346799999999999999997  44 345666 4


Q ss_pred             CCcEEeCCCCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccc
Q 013952          275 KGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLS  354 (433)
Q Consensus       275 ~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~  354 (433)
                      +|+|.||++|||+.|+|||+|||+..+          ..+..|..||+.+|.||.+...   +.+|..+|++++..++++
T Consensus       304 ~G~i~vd~~~~t~~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~---~~~~~~~p~~~~~~~~~a  370 (478)
T 1v59_A          304 RGRLVIDDQFNSKFPHIKVVGDVTFGP----------MLAHKAEEEGIAAVEMLKTGHG---HVNYNNIPSVMYSHPEVA  370 (478)
T ss_dssp             TSCBCCCTTSBCSSTTEEECGGGSSSC----------CCHHHHHHHHHHHHHHHHHSCC---CCCTTSCCEEECSSSEEE
T ss_pred             CCCEeECcCCccCCCCEEEeeccCCCc----------ccHHHHHHHHHHHHHHHcCCCC---CCCCCCCCEEEEcCCcEE
Confidence            788999999999999999999999865          4577899999999999997432   256788898887766665


Q ss_pred             eEEecCCC------CcEEEEcCCCc-----c---ccCCcEEEEEEe--CCEEEEEEEecCChHH-HHHHHHHHHcCCCCC
Q 013952          355 WQFYGDNV------GDTVLFGDNDL-----A---SATHKFGTYWIK--DGKVVGVFLESGTPEE-NKAIAKVARVQPSVE  417 (433)
Q Consensus       355 ~~~~g~~~------~~~~~~~~~~~-----~---~~~~~~~~~~~~--~~~l~G~~~~g~~~~~-~~~~~~~~~~~~~~~  417 (433)
                      .+  |.++      +..+.....+.     .   ....+|.|+++.  +|+|+|+|++|+.+.+ ++.++.+|++++|++
T Consensus       371 ~v--G~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~~i~~~~~~~  448 (478)
T 1v59_A          371 WV--GKTEEQLKEAGIDYKIGKFPFAANSRAKTNQDTEGFVKILIDSKTERILGAHIIGPNAGEMIAEAGLALEYGASAE  448 (478)
T ss_dssp             EE--ECCHHHHHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHH
T ss_pred             EE--ECCHHHHHHcCCCEEEEEEecccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHH
Confidence            44  6654      22233222211     0   234678888773  8999999999999877 599999999999999


Q ss_pred             ChhhhcccCCCccc
Q 013952          418 SLDVLKNEGLSFAS  431 (433)
Q Consensus       418 ~~~~~~~~~~~~~~  431 (433)
                      |+..+..+-+++++
T Consensus       449 ~l~~~~~~~Pt~~e  462 (478)
T 1v59_A          449 DVARVCHAHPTLSE  462 (478)
T ss_dssp             HHHTSCCCTTCTTH
T ss_pred             HHhhCCCCCCCHHH
Confidence            88877666555543

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=100.00  E-value=3.1e-48  Score=381.44  Aligned_cols=392  Identities=21%  Similarity=0.253  Sum_probs=285.4

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CC---CCCCCCccccccCCCC----CCCCCCcccccCC----
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VA---PYERPALSKAYLFPEG----TARLPGFHVCVGS----   71 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~---~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~----   71 (433)
                      .++||+|||||++|++||.+|+++|++   |+|||+. ..   .+..|..++.++....    ....+.+......    
T Consensus        25 ~~~DVvVIGgG~aGl~aA~~la~~G~~---V~liEk~~~GG~~~~~gcip~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~  101 (484)
T 3o0h_A           25 FDFDLFVIGSGSGGVRAARLAGALGKR---VAIAEEYRIGGTCVIRGCVPKKLYFYASQYAQEFSKSIGFGWKYADPIFN  101 (484)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHGGGTBCCCCCEEC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCcCE---EEEEeCCCCCCceeccCccccHHHHHHHHHHHHHHHHHhCCcccCCCccC
Confidence            468999999999999999999999987   9999996 11   0000111111100000    0000000000000    


Q ss_pred             -------------CCCCCCHhHHHhCCcEEEeCceEEEEECCCCEEEeC-CCcEEecceEEEccCCCcc-ccCCCCCCCC
Q 013952           72 -------------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSA-TGLIFKYQILVIATGSTVL-RLTDFGVEGA  136 (433)
Q Consensus        72 -------------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~-~~~~~~~d~lvlAtG~~~~-~~~~~~~~g~  136 (433)
                                   .....+...+.+.+++++.+ .+..++  .+.+.+. ++.++.||++|+|||+.|. .|+   ++|.
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~i~--~~~v~v~~~~~~~~~d~lviAtG~~p~~~p~---i~G~  175 (484)
T 3o0h_A          102 WEKLVAAKNKEISRLEGLYREGLQNSNVHIYES-RAVFVD--EHTLELSVTGERISAEKILIATGAKIVSNSA---IKGS  175 (484)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEES-CEEEEE--TTEEEETTTCCEEEEEEEEECCCEEECCC-----CBTG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEee--CCEEEEecCCeEEEeCEEEEccCCCcccCCC---CCCc
Confidence                         00011234456689999997 566665  4567776 7788999999999999988 776   4554


Q ss_pred             CCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHh
Q 013952          137 DAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYAN  216 (433)
Q Consensus       137 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~  216 (433)
                      +  .+++..+.....        ..+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.+.+++
T Consensus       176 ~--~~~~~~~~~~~~--------~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~  244 (484)
T 3o0h_A          176 D--LCLTSNEIFDLE--------KLPKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLILRN-FDYDLRQLLNDAMVA  244 (484)
T ss_dssp             G--GSBCTTTGGGCS--------SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHH
T ss_pred             c--ccccHHHHHhHH--------hcCCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCccccc-cCHHHHHHHHHHHHH
Confidence            3  223323322211        14789999999999999999999999999999999988876 799999999999999


Q ss_pred             cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh---hccccc-CCCcEEeCCCCCCCCCCeE
Q 013952          217 KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSADDVY  292 (433)
Q Consensus       217 ~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~vf  292 (433)
                      .||+++++++|.+++.++ +. ..+.+.+|+++++|.||+|+|++|+..++   ..++.. ++|+|.||+++||+.|+||
T Consensus       245 ~Gv~i~~~~~V~~i~~~~-~~-v~v~~~~g~~i~aD~Vi~A~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~Iy  322 (484)
T 3o0h_A          245 KGISIIYEATVSQVQSTE-NC-YNVVLTNGQTICADRVMLATGRVPNTTGLGLERAGVKVNEFGAVVVDEKMTTNVSHIW  322 (484)
T ss_dssp             HTCEEESSCCEEEEEECS-SS-EEEEETTSCEEEESEEEECCCEEECCTTCCHHHHTCCBCTTSCBCCCTTSBCSSTTEE
T ss_pred             CCCEEEeCCEEEEEEeeC-CE-EEEEECCCcEEEcCEEEEeeCCCcCCCCCChhhcCceECCCCCEeECCCCCCCCCCEE
Confidence            999999999999998733 33 47888999899999999999999999853   456666 5688999999999999999


Q ss_pred             EcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCC------CcEE
Q 013952          293 AVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV------GDTV  366 (433)
Q Consensus       293 a~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~------~~~~  366 (433)
                      |+|||++.+          +++..|..||+++|+||++....  ...|..+|++++..++++.+  |+++      +..+
T Consensus       323 a~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~--~~~~~~~p~~~~~~p~~a~v--Glte~~a~~~g~~~  388 (484)
T 3o0h_A          323 AVGDVTGHI----------QLTPVAIHDAMCFVKNAFENTST--TPDYDLITTAVFSQPEIGTV--GLSEEDALHRYKRV  388 (484)
T ss_dssp             ECGGGGTSC----------CCHHHHHHHHHHHHHHHHC---C--CCCCTTCCEEECCSSCEEEE--ECCHHHHHHHCSEE
T ss_pred             EEEecCCCC----------cCHHHHHHHHHHHHHHHcCCCCC--cCCCCCCcEEEECCCCEEEe--eCCHHHHHHcCCCE
Confidence            999999854          56788999999999999975432  25778889888766665554  7665      2223


Q ss_pred             EEcCCCcc--------ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhcccCCCccc
Q 013952          367 LFGDNDLA--------SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFAS  431 (433)
Q Consensus       367 ~~~~~~~~--------~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (433)
                      ..+..+..        ....+|.|+++  ++++|||+|++|+.++|+ +.++.+|++++|++|+..+.-+-+++++
T Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e  464 (484)
T 3o0h_A          389 EIYRTVFRPMRNVLSGSPEKMFMKLVVDGESRIVVGAHVLGENAGEIAQLIGISLKGKLTKDIFDKTMAVHPTMSE  464 (484)
T ss_dssp             EEEEEEECCHHHHHHTCCCCEEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCSGG
T ss_pred             EEEEecCCcchhhccCCCCcEEEEEEEECCCCEEEEEEEECcCHHHHHHHHHHHHHCCCCHHHHhccccCCCChHH
Confidence            22222111        23568899887  579999999999999885 9999999999999988877666665554

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=8.9e-48  Score=377.49  Aligned_cols=394  Identities=24%  Similarity=0.277  Sum_probs=280.7

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC-----CCccccccCCCC----------CCCCC--Ccc
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYER-----PALSKAYLFPEG----------TARLP--GFH   66 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~-----~~~~~~~~~~~~----------~~~~~--~~~   66 (433)
                      .++||+|||||++|+++|..|++.|++   |+|||++......     +..++.++....          ...++  ...
T Consensus         5 ~~~dvvIIGaG~aGl~aA~~l~~~g~~---V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~~g~~~~~~~   81 (470)
T 1dxl_A            5 DENDVVIIGGGPGGYVAAIKAAQLGFK---TTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVE   81 (470)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCC---EEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEE
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCe---EEEEeCCCCccccccCcCccchHHHHHHHHHHHHHHHHHHhcCcccCCCc
Confidence            468999999999999999999999987   9999998211110     011111100000          00000  000


Q ss_pred             cccC----------CCCCCCCHhHHHhCCcEEEeCceEEEEECCCCEEEeCCC--cEEecceEEEccCCCccccCCCCCC
Q 013952           67 VCVG----------SGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATG--LIFKYQILVIATGSTVLRLTDFGVE  134 (433)
Q Consensus        67 ~~~~----------~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~--~~~~~d~lvlAtG~~~~~~~~~~~~  134 (433)
                      ....          ......+..++++.+++++.++.+. ++.....|.+.+|  .+++||+||+|||+.|..|+   ++
T Consensus        82 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-~~~~~~~v~~~~G~~~~i~~d~lIiAtGs~p~~p~---~~  157 (470)
T 1dxl_A           82 IDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKF-VSPSEISVDTIEGENTVVKGKHIIIATGSDVKSLP---GV  157 (470)
T ss_dssp             ECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEE-EETTEEEECCSSSCCEEEECSEEEECCCEEECCBT---TB
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE-ecCCEEEEEeCCCceEEEEcCEEEECCCCCCCCCC---CC
Confidence            0000          0000012345566799999986554 6654444555566  68999999999999998887   45


Q ss_pred             CCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHH
Q 013952          135 GADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYY  214 (433)
Q Consensus       135 g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l  214 (433)
                      |.+..++++.   .++..+    +. .+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.+.+
T Consensus       158 g~~~~~v~~~---~~~~~~----~~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~l~~~l  228 (470)
T 1dxl_A          158 TIDEKKIVSS---TGALAL----SE-IPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPT-MDAEIRKQFQRSL  228 (470)
T ss_dssp             CCCSSSEECH---HHHTTC----SS-CCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-SCHHHHHHHHHHH
T ss_pred             CCCcccEEeH---HHhhhh----hh-cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccccc-ccHHHHHHHHHHH
Confidence            5544455533   332221    11 4789999999999999999999999999999999998885 8999999999999


Q ss_pred             HhcCcEEEcCCeEEEEEecCCCcEEEEEeC---CC--cEEECCEEEEcccCccChhhh---hccccc-CCCcEEeCCCCC
Q 013952          215 ANKGIKIIKGTVAVGFTTNADGEVKEVKLK---DG--RTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFK  285 (433)
Q Consensus       215 ~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~---~g--~~i~~d~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~  285 (433)
                      ++.||+++++++|.++..++++  ..+.+.   +|  +++++|.||+|+|++|+++++   ..++.. ++|+|.||++||
T Consensus       229 ~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~  306 (470)
T 1dxl_A          229 EKQGMKFKLKTKVVGVDTSGDG--VKLTVEPSAGGEQTIIEADVVLVSAGRTPFTSGLNLDKIGVETDKLGRILVNERFS  306 (470)
T ss_dssp             HHSSCCEECSEEEEEEECSSSS--EEEEEEESSSCCCEEEEESEEECCCCEEECCTTSCCTTTTCCBCSSSCBCCCTTCB
T ss_pred             HHcCCEEEeCCEEEEEEEcCCe--EEEEEEecCCCcceEEECCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECcCCc
Confidence            9999999999999999873323  345543   44  689999999999999999873   335666 468899999999


Q ss_pred             CCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCC---
Q 013952          286 TSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV---  362 (433)
Q Consensus       286 t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~---  362 (433)
                      |+.|+|||+|||++.+          ..+..|..||+.||.||.+..   .+..|..+|++.+..+  .+..+|.++   
T Consensus       307 t~~~~Iya~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~---~~~~~~~~p~~~~~~~--~~a~vG~~e~~a  371 (470)
T 1dxl_A          307 TNVSGVYAIGDVIPGP----------MLAHKAEEDGVACVEYLAGKV---GHVDYDKVPGVVYTNP--EVASVGKTEEQV  371 (470)
T ss_dssp             CSSTTEEECSTTSSSC----------CCHHHHHHHHHHHHHHHTTSC---CCCCTTSCCEEECSSS--EEEEEECCHHHH
T ss_pred             cCCCCEEEEeccCCCC----------ccHHHHHHHHHHHHHHHcCCC---cCCCCCCCCEEEECCC--ceEEEcCCHHHH
Confidence            9999999999999764          457789999999999999742   1245667787655444  444557654   


Q ss_pred             ---CcEEEEcCCCcc--------ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhcccCCC
Q 013952          363 ---GDTVLFGDNDLA--------SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLS  428 (433)
Q Consensus       363 ---~~~~~~~~~~~~--------~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  428 (433)
                         +..+..+..+..        ....+|.|+++  ++|+|+|+|++|+.++++ +.++.+|++++|++|+..+.-+-++
T Consensus       372 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~l~~~~~~~Pt  451 (470)
T 1dxl_A          372 KETGVEYRVGKFPFMANSRAKAIDNAEGLVKIIAEKETDKILGVHIMAPNAGELIHEAAIALQYDASSEDIARVCHAHPT  451 (470)
T ss_dssp             HHTTCCEEEEEEEGGGCHHHHHHSCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSC
T ss_pred             HhcCCcEEEEEEecccchHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCC
Confidence               222333222111        23568999888  489999999999998885 9999999999999988776555444


Q ss_pred             cc
Q 013952          429 FA  430 (433)
Q Consensus       429 ~~  430 (433)
                      ++
T Consensus       452 ~~  453 (470)
T 1dxl_A          452 MS  453 (470)
T ss_dssp             TT
T ss_pred             hH
Confidence            43

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=2e-47  Score=373.11  Aligned_cols=392  Identities=21%  Similarity=0.277  Sum_probs=279.7

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CC---CCCCCCccccccCCCC----CCCCCCcccccCCC----
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VA---PYERPALSKAYLFPEG----TARLPGFHVCVGSG----   72 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~---~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~----   72 (433)
                      ++||+|||||+||+++|.+|++.|++   |+|||++ ..   ....|..++.++....    ..+...+.......    
T Consensus         3 ~~dvvIIGgG~aGl~aA~~l~~~g~~---V~lie~~~~gG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~   79 (455)
T 1ebd_A            3 ETETLVVGAGPGGYVAAIRAAQLGQK---VTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDF   79 (455)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEECH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCe---EEEEECCCCCCcCcCcCchhhHHHHHHHHHHHHHHHHHhcCcccCCCccCH
Confidence            58999999999999999999999987   9999998 11   0001111111110000    00000000000000    


Q ss_pred             -------------CCCCCHhHHHhCCcEEEeCceEEEEECCCCEEEeCCC-cEEecceEEEccCCCccccCCCCCCCCCC
Q 013952           73 -------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSATG-LIFKYQILVIATGSTVLRLTDFGVEGADA  138 (433)
Q Consensus        73 -------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~-~~~~~d~lvlAtG~~~~~~~~~~~~g~~~  138 (433)
                                   ....+.+++++.+++++.++.+. ++.....|.+.++ .++.||+||+|||++|..|+   +++.+.
T Consensus        80 ~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-id~~~v~V~~~~G~~~i~~d~lViATGs~p~~~~---~~g~~~  155 (455)
T 1ebd_A           80 AKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYF-VDANTVRVVNGDSAQTYTFKNAIIATGSRPIELP---NFKFSN  155 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTTCEEEESEEEE-EETTEEEEEETTEEEEEECSEEEECCCEEECCBT---TBCCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE-ccCCeEEEEeCCCcEEEEeCEEEEecCCCCCCCC---CCCccc
Confidence                         00012345567899999986544 6654445666666 67999999999999998887   455432


Q ss_pred             CCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcC
Q 013952          139 KNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKG  218 (433)
Q Consensus       139 ~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~G  218 (433)
                       .++   +..+...+    +. .+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.+.+++.|
T Consensus       156 -~v~---~~~~~~~~----~~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~g  225 (455)
T 1ebd_A          156 -RIL---DSTGALNL----GE-VPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG-FEKQMAAIIKKRLKKKG  225 (455)
T ss_dssp             -SEE---CHHHHHTC----SS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-SCHHHHHHHHHHHHHTT
T ss_pred             -eEe---cHHHHhcc----cc-CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccccc-cCHHHHHHHHHHHHHCC
Confidence             243   33333222    11 4789999999999999999999999999999999988885 79999999999999999


Q ss_pred             cEEEcCCeEEEEEecCCCcEEEEEeC---CCcEEECCEEEEcccCccChhhh---hccccc-CCCcEEeCCCCCCCCCCe
Q 013952          219 IKIIKGTVAVGFTTNADGEVKEVKLK---DGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSADDV  291 (433)
Q Consensus       219 V~v~~~~~v~~i~~~~~g~~~~v~~~---~g~~i~~d~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~v  291 (433)
                      |+++++++|.++..++++  ..+.+.   +++++++|.||+|+|++|+++++   ..++.. ++|+|.||++|||+.|+|
T Consensus       226 v~i~~~~~v~~i~~~~~~--~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t~~~~I  303 (455)
T 1ebd_A          226 VEVVTNALAKGAEEREDG--VTVTYEANGETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRTSVPNI  303 (455)
T ss_dssp             CEEEESEEEEEEEEETTE--EEEEEEETTEEEEEEESEEEECSCEEESCSSSSTTTTTCCBCTTSCBCCCTTCBCSSTTE
T ss_pred             CEEEeCCEEEEEEEeCCe--EEEEEEeCCceeEEEcCEEEECcCCCcccCcCChhhcCCccCCCCCEeeCCCcccCCCCE
Confidence            999999999999863222  345543   45679999999999999999863   335666 468899999999999999


Q ss_pred             EEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCC------CcE
Q 013952          292 YAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV------GDT  365 (433)
Q Consensus       292 fa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~------~~~  365 (433)
                      ||+|||+..+          ..+..|..||+.+|.||.+..   .+..|..+|++.+..+++  ..+|.++      +..
T Consensus       304 ya~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~---~~~~~~~~p~~~~~~~~~--a~vG~~e~~a~~~g~~  368 (455)
T 1ebd_A          304 FAIGDIVPGP----------ALAHKASYEGKVAAEAIAGHP---SAVDYVAIPAVVFSDPEC--ASVGYFEQQAKDEGID  368 (455)
T ss_dssp             EECGGGSSSC----------CCHHHHHHHHHHHHHHHTSCC---CCCCCSCCCEEECSSSCE--EEEECCHHHHHTTTCC
T ss_pred             EEEeccCCCc----------ccHHHHHHHHHHHHHHHcCCC---ccCCCCCCCEEEECCCce--EEEeCCHHHHHhcCCC
Confidence            9999999764          457789999999999999742   224566778766554544  4557654      222


Q ss_pred             EEEcCCCcc--------ccCCcEEEEEEe--CCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhcccCCCcc
Q 013952          366 VLFGDNDLA--------SATHKFGTYWIK--DGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFA  430 (433)
Q Consensus       366 ~~~~~~~~~--------~~~~~~~~~~~~--~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (433)
                      +..+..+..        ....+|.|++++  +|+|+|+|++|+.++|+ +.++.+|++++|++|+..+.-+-++++
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~  444 (455)
T 1ebd_A          369 VIAAKFPFAANGRALALNDTDGFLKLVVRKEDGVIIGAQIIGPNASDMIAELGLAIEAGMTAEDIALTIHAHPTLG  444 (455)
T ss_dssp             EEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHHTCBHHHHHHSCCCTTSST
T ss_pred             EEEEEEEcCcchHHhhcCCCcEEEEEEEECCCCEEEEEEEeCCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCCHH
Confidence            333222110        235689998884  89999999999998885 999999999999998877655555544

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=100.00  E-value=2.9e-47  Score=372.35  Aligned_cols=389  Identities=22%  Similarity=0.292  Sum_probs=279.0

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCC-C---CCCCCCccccccCCCC---------CCCCC---Ccccc
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEV-A---PYERPALSKAYLFPEG---------TARLP---GFHVC   68 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~-~---~~~~~~~~~~~~~~~~---------~~~~~---~~~~~   68 (433)
                      ++||+|||||+||++||..|++.|++   |+|||++. .   .+..|..++.++....         ...++   .....
T Consensus         6 ~~dvvIIG~G~aG~~aA~~l~~~g~~---V~lie~~~~GG~~~~~g~iP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~   82 (464)
T 2eq6_A            6 TYDLIVIGTGPGGYHAAIRAAQLGLK---VLAVEAGEVGGVCLNVGCIPTKALLHAAETLHHLKVAEGFGLKAKPELDLK   82 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHHHHGGGTEECCCEECHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCe---EEEEeCCCCCCCCCCcChHHHHHHHHHHHHHHHHHhHHhcCCCCCCCcCHH
Confidence            58999999999999999999999987   99999982 0   0111111111110000         00000   00000


Q ss_pred             --cC------CCCCCCCHhHHHhCCcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCCCCCCCCCC
Q 013952           69 --VG------SGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKN  140 (433)
Q Consensus        69 --~~------~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~  140 (433)
                        ..      .........++++.+++++.++.+. ++  .+++.+. +++++||+||+|||++|+.|+  ++++ + ..
T Consensus        83 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-~~--~~~v~v~-g~~~~~d~lViATGs~p~~p~--gi~~-~-~~  154 (464)
T 2eq6_A           83 KLGGWRDQVVKKLTGGVGTLLKGNGVELLRGFARL-VG--PKEVEVG-GERYGAKSLILATGSEPLELK--GFPF-G-ED  154 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEE-EE--TTEEEET-TEEEEEEEEEECCCEEECCBT--TBCC-S-SS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEE-cc--CCEEEEc-cEEEEeCEEEEcCCCCCCCCC--CCCC-C-Cc
Confidence              00      0000002334567899999986543 54  4677776 678999999999999998775  2555 2 24


Q ss_pred             EEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcE
Q 013952          141 IFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIK  220 (433)
Q Consensus       141 v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~  220 (433)
                      ++   +..++..+    +...+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.+.+++.||+
T Consensus       155 v~---~~~~~~~l----~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~gV~  226 (464)
T 2eq6_A          155 VW---DSTRALKV----EEGLPKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILPQ-GDPETAALLRRALEKEGIR  226 (464)
T ss_dssp             EE---CHHHHTCG----GGCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHTTCE
T ss_pred             EE---cHHHHHhh----hhhcCCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCccccc-cCHHHHHHHHHHHHhcCCE
Confidence            54   33333322    2224789999999999999999999999999999999998885 7999999999999999999


Q ss_pred             EEcCCeEEEEEecCCCcEEEEEeC-C--Cc--EEECCEEEEcccCccChhhh---hccccc-CCCcEEeCCCCCCCCCCe
Q 013952          221 IIKGTVAVGFTTNADGEVKEVKLK-D--GR--TLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSADDV  291 (433)
Q Consensus       221 v~~~~~v~~i~~~~~g~~~~v~~~-~--g~--~i~~d~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~v  291 (433)
                      ++++++|.+++.+ ++ ...+.+. +  |+  ++++|.|++|+|++|+++++   ..++.. ++|+|.||+++||+.|+|
T Consensus       227 i~~~~~v~~i~~~-~~-~~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~I  304 (464)
T 2eq6_A          227 VRTKTKAVGYEKK-KD-GLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRTEGLGLEKAGVKVDERGFIRVNARMETSVPGV  304 (464)
T ss_dssp             EECSEEEEEEEEE-TT-EEEEEEEETTCCSCEEEEESEEEECSCEEESCTTSSHHHHTCCBCTTSCBCCCTTCBCSSTTE
T ss_pred             EEcCCEEEEEEEe-CC-EEEEEEeecCCCceeEEEcCEEEECCCcccCCCCCChhhcCceecCCCCEEECCCcccCCCCE
Confidence            9999999999873 22 2456665 5  76  89999999999999999853   345666 578899999999999999


Q ss_pred             EEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCC------CcE
Q 013952          292 YAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV------GDT  365 (433)
Q Consensus       292 fa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~------~~~  365 (433)
                      ||+|||++.+          ..+..|..||+.+|.||.+..   ...+|. +|++....++  +..+|.++      +..
T Consensus       305 ya~GD~~~~~----------~l~~~A~~~g~~aa~~i~g~~---~~~~~~-~p~~~~~~~~--~a~vG~~e~~a~~~g~~  368 (464)
T 2eq6_A          305 YAIGDAARPP----------LLAHKAMREGLIAAENAAGKD---SAFDYQ-VPSVVYTSPE--WAGVGLTEEEAKRAGYK  368 (464)
T ss_dssp             EECGGGTCSS----------CCHHHHHHHHHHHHHHHTTCC---CCCCCC-CCEEECSSSE--EEEEECCHHHHHHTTCC
T ss_pred             EEEeccCCCc----------ccHHHHHHHHHHHHHHhcCCC---cccCCC-CCeEEECCCC--EEEEeCCHHHHHhcCCC
Confidence            9999999764          457789999999999999743   124566 7876554444  44557664      222


Q ss_pred             EEEcCCCcc--------ccCCcEEEEEEe--CCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhcccCCCcc
Q 013952          366 VLFGDNDLA--------SATHKFGTYWIK--DGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFA  430 (433)
Q Consensus       366 ~~~~~~~~~--------~~~~~~~~~~~~--~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (433)
                      +..+..+..        ....+|.|++++  +|+|+|+|++|+.++|+ +.++.+|++++|++|+..+.-+-++++
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~g~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~  444 (464)
T 2eq6_A          369 VKVGKFPLAASGRALTLGGAEGMVKVVGDEETDLLLGVFIVGPQAGELIAEAALALEMGATLTDLALTVHPHPTLS  444 (464)
T ss_dssp             EEEEEEEGGGCHHHHHTSCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCTT
T ss_pred             EEEEEEEcCcchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcCCCCChH
Confidence            333222110        235688998884  79999999999999885 999999999999998876555555444

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=100.00  E-value=2.3e-48  Score=382.29  Aligned_cols=392  Identities=20%  Similarity=0.267  Sum_probs=281.4

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHH-cCCCCCcEEEEc---------CCCCCCC-----CCCccccccCCCCC----CCCCC
Q 013952            4 KSFKYVILGGGVSAGYAAREFAK-QGVKPGELAIIS---------KEVAPYE-----RPALSKAYLFPEGT----ARLPG   64 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~-~g~~~~~V~lie---------~~~~~~~-----~~~~~~~~~~~~~~----~~~~~   64 (433)
                      .+|||+|||||++|++||.+|++ .|++   |+|||         +.. ...     .|..++.++.....    .....
T Consensus         2 ~~~dvvVIGgG~aGl~aA~~la~~~G~~---V~liE~~~~~~~~~~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~   77 (490)
T 1fec_A            2 RAYDLVVIGAGSGGLEAGWNAASLHKKR---VAVIDLQKHHGPPHYAA-LGGTCVNVGCVPKKLMVTGANYMDTIRESAG   77 (490)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCC---EEEEESCSSSBTTTBSC-TTCHHHHHSHHHHHHHHHHHHHHHHHHHGGG
T ss_pred             ccccEEEECCCHHHHHHHHHHHHHcCCE---EEEEecccccccccCCC-cCccccCCCcchhhHHHHHHHHHHHHHHHHh
Confidence            36899999999999999999999 9987   99999         321 000     01111111100000    00000


Q ss_pred             cccccCC-----C--------------CCCCCHhHHHhC-CcEEEeCceEEEEECCCCEEEeC-----CC---cEEecce
Q 013952           65 FHVCVGS-----G--------------GERLLPEWYKEK-GIELILSTEIVRADIASKTLLSA-----TG---LIFKYQI  116 (433)
Q Consensus        65 ~~~~~~~-----~--------------~~~~~~~~~~~~-~v~~~~~~~v~~i~~~~~~v~~~-----~~---~~~~~d~  116 (433)
                      +......     +              ........+++. +++++.+ .+..++.  +++.+.     ++   +++.||+
T Consensus        78 ~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g-~~~~i~~--~~v~v~~~~~~~g~~~~~~~~d~  154 (490)
T 1fec_A           78 FGWELDRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQG-FGALQDN--HTVLVRESADPNSAVLETLDTEY  154 (490)
T ss_dssp             GTEECCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEEES-EEEEEET--TEEEEESSSSTTSCEEEEEEEEE
T ss_pred             cCcccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEe-EEEEeeC--CEEEEEeeccCCCCceEEEEcCE
Confidence            0000000     0              000112234567 9999998 4666764  456553     56   6899999


Q ss_pred             EEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhC---CCeEEEEcc
Q 013952          117 LVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKIN---NIDVSMVYP  193 (433)
Q Consensus       117 lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~---g~~V~li~~  193 (433)
                      ||||||++|..|+   ++|.+  .++   +..++..+    . ..+++++|||+|++|+|+|..|.+.   |.+|+++++
T Consensus       155 lviAtGs~p~~p~---i~g~~--~~~---~~~~~~~~----~-~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~  221 (490)
T 1fec_A          155 ILLATGSWPQHLG---IEGDD--LCI---TSNEAFYL----D-EAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYR  221 (490)
T ss_dssp             EEECCCEEECCCC---SBTGG--GCB---CHHHHTTC----S-SCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEES
T ss_pred             EEEeCCCCCCCCC---CCCcc--cee---cHHHHhhh----h-hcCCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEc
Confidence            9999999998877   45542  222   33333221    1 1478999999999999999999999   999999999


Q ss_pred             CCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhh--h-hcc
Q 013952          194 EPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISL--F-KGQ  270 (433)
Q Consensus       194 ~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~--~-~~~  270 (433)
                      .+.+++. +++++.+.+.+.+++.||+++++++|.++..++++ ...+.+.+|+++++|.||+|+|++|+++.  + ..+
T Consensus       222 ~~~~l~~-~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~-~~~v~~~~G~~i~~D~vv~a~G~~p~~~~L~l~~~g  299 (490)
T 1fec_A          222 GDMILRG-FDSELRKQLTEQLRANGINVRTHENPAKVTKNADG-TRHVVFESGAEADYDVVMLAIGRVPRSQTLQLEKAG  299 (490)
T ss_dssp             SSSSSTT-SCHHHHHHHHHHHHHTTEEEEETCCEEEEEECTTS-CEEEEETTSCEEEESEEEECSCEEESCTTSCGGGGT
T ss_pred             CCCcccc-cCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCC-EEEEEECCCcEEEcCEEEEccCCCcCccccCchhcC
Confidence            9998886 89999999999999999999999999999873323 35788888889999999999999999973  3 345


Q ss_pred             ccc-CCCcEEeCCCCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEe
Q 013952          271 VAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSR  349 (433)
Q Consensus       271 ~~~-~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~  349 (433)
                      +.. ++|+|.||++|||+.|+|||+|||++.+          .++..|..||+++|.||.+...  ....|..+|++.+.
T Consensus       300 l~~~~~G~I~Vd~~~~t~~~~IyA~GD~~~~~----------~l~~~A~~~g~~aa~~i~g~~~--~~~~~~~~p~~~~~  367 (490)
T 1fec_A          300 VEVAKNGAIKVDAYSKTNVDNIYAIGDVTDRV----------MLTPVAINEGAAFVDTVFANKP--RATDHTKVACAVFS  367 (490)
T ss_dssp             CCBCTTSCBCCCTTCBCSSTTEEECGGGGCSC----------CCHHHHHHHHHHHHHHHHSSCC--CCCCCSSCCEEECC
T ss_pred             ccCCCCCCEEECCCCccCCCCEEEEeccCCCc----------cCHHHHHHHHHHHHHHhcCCCC--CcCCCCCccEEEEC
Confidence            666 4788999999999999999999999643          5788899999999999997532  23567778877665


Q ss_pred             ecccceEEecCCCC------cEEEEcCCCc--------cccCCcEE-EEEEe--CCEEEEEEEecCChHHH-HHHHHHHH
Q 013952          350 AFDLSWQFYGDNVG------DTVLFGDNDL--------ASATHKFG-TYWIK--DGKVVGVFLESGTPEEN-KAIAKVAR  411 (433)
Q Consensus       350 ~~~~~~~~~g~~~~------~~~~~~~~~~--------~~~~~~~~-~~~~~--~~~l~G~~~~g~~~~~~-~~~~~~~~  411 (433)
                      .++++  .+|+++.      ..+.....+.        .....+|. |++++  +|+|+|+|++|+.++++ +.++.+|+
T Consensus       368 ~~~~a--~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~  445 (490)
T 1fec_A          368 IPPMG--VCGYVEEDAAKKYDQVAVYESSFTPLMHNISGSTYKKFMVRIVTNHADGEVLGVHMLGDSSPEIIQSVAICLK  445 (490)
T ss_dssp             SSCEE--EEECCHHHHHHHCSEEEEEEEEECCHHHHHHSCTTCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHH
T ss_pred             CCCeE--EEeCCHHHHHhcCCCEEEEEeecChhhhhhhcCCCeEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHH
Confidence            55544  4576642      1222211111        01356889 98884  89999999999999885 99999999


Q ss_pred             cCCCCCChhhhcccCCCccc
Q 013952          412 VQPSVESLDVLKNEGLSFAS  431 (433)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~  431 (433)
                      +++|++||..+.-+-+++++
T Consensus       446 ~~~t~~~l~~~~~~hPt~~e  465 (490)
T 1fec_A          446 MGAKISDFYNTIGVHPTSAE  465 (490)
T ss_dssp             TTCBHHHHHTSCCCSSCSGG
T ss_pred             cCCCHHHHhccccCCCCHHH
Confidence            99999988876555555543

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=100.00  E-value=5.1e-47  Score=370.29  Aligned_cols=393  Identities=20%  Similarity=0.251  Sum_probs=282.7

Q ss_pred             CCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CC---CCCCCCccccccCCCC----CCCCCCcccccCC---
Q 013952            3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VA---PYERPALSKAYLFPEG----TARLPGFHVCVGS---   71 (433)
Q Consensus         3 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~---~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~---   71 (433)
                      ++++||+|||||++|+++|.+|++.|++   |+|||++ ..   .+..|..++.++....    ..+.+.+......   
T Consensus         2 ~~~~dVvIIGgG~aGl~aA~~l~~~g~~---V~liE~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~~~~~~~   78 (463)
T 2r9z_A            2 TQHFDLIAIGGGSGGLAVAEKAAAFGKR---VALIESKALGGTCVNVGCVPKKVMWYASHLAEAVRDAPGFGVQASGGTL   78 (463)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTBCCC---C
T ss_pred             CccCcEEEECCCHHHHHHHHHHHhCCCc---EEEEcCCCCCCcCcCcCchhHHHHHHHHHHHHHHhhhhhcCcccCCCCc
Confidence            3579999999999999999999999887   9999998 10   0000111111110000    0000000000000   


Q ss_pred             C--------------CCCCCHhHHHhCCcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCCCCCCC
Q 013952           72 G--------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGAD  137 (433)
Q Consensus        72 ~--------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~  137 (433)
                      +              ....+...+.+.+++++.+ .+..++  .++|.+ +++++.||+||+|||+.|..|+   +||.+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~i~--~~~v~~-~g~~~~~d~lviAtGs~p~~p~---i~G~~  151 (463)
T 2r9z_A           79 DWPRLVAGRDRYIGAINSFWDGYVERLGITRVDG-HARFVD--AHTIEV-EGQRLSADHIVIATGGRPIVPR---LPGAE  151 (463)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEES-CEEEEE--TTEEEE-TTEEEEEEEEEECCCEEECCCS---CTTGG
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEe-EEEEcc--CCEEEE-CCEEEEcCEEEECCCCCCCCCC---CCCcc
Confidence            0              0001123346689999998 455565  356777 6778999999999999998877   46542


Q ss_pred             CCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhc
Q 013952          138 AKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK  217 (433)
Q Consensus       138 ~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~  217 (433)
                        .+   .+..++..+    . ..+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.+.+++.
T Consensus       152 --~~---~~~~~~~~~----~-~~~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~  220 (463)
T 2r9z_A          152 --LG---ITSDGFFAL----Q-QQPKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQ-FDPLLSATLAENMHAQ  220 (463)
T ss_dssp             --GS---BCHHHHHHC----S-SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHT
T ss_pred             --ce---ecHHHHhhh----h-ccCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccccc-cCHHHHHHHHHHHHHC
Confidence              12   233333222    1 14789999999999999999999999999999999988876 7999999999999999


Q ss_pred             CcEEEcCCeEEEEEecCCCcEEEEEeCCCc-EEECCEEEEcccCccChhhh---hccccc-CCCcEEeCCCCCCCCCCeE
Q 013952          218 GIKIIKGTVAVGFTTNADGEVKEVKLKDGR-TLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSADDVY  292 (433)
Q Consensus       218 GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~-~i~~d~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~vf  292 (433)
                      ||+++++++|.++..++++  ..+.+.+|+ ++++|.|++|+|++|+++.+   ..++.. ++|+|.||+++||+.|+||
T Consensus       221 gv~i~~~~~v~~i~~~~~~--~~v~~~~G~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t~~~~Iy  298 (463)
T 2r9z_A          221 GIETHLEFAVAALERDAQG--TTLVAQDGTRLEGFDSVIWAVGRAPNTRDLGLEAAGIEVQSNGMVPTDAYQNTNVPGVY  298 (463)
T ss_dssp             TCEEESSCCEEEEEEETTE--EEEEETTCCEEEEESEEEECSCEEESCTTSCHHHHTCCCCTTSCCCCCTTSBCSSTTEE
T ss_pred             CCEEEeCCEEEEEEEeCCe--EEEEEeCCcEEEEcCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECCCCccCCCCEE
Confidence            9999999999999873333  578888998 89999999999999999732   345666 4788999999999999999


Q ss_pred             EcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCC-------CcE
Q 013952          293 AVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV-------GDT  365 (433)
Q Consensus       293 a~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~-------~~~  365 (433)
                      |+|||++.+          .++..|..||+.+|.||.+.... ....|..+|++++..++++.+  |+++       +..
T Consensus       299 a~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~~-~~~~~~~~p~~~~~~~~~a~v--Gl~e~~a~~~~g~~  365 (463)
T 2r9z_A          299 ALGDITGRD----------QLTPVAIAAGRRLAERLFDGQSE-RKLDYDNIPTVVFAHPPLSKV--GLSEPEARERLGDV  365 (463)
T ss_dssp             ECGGGGTSC----------CCHHHHHHHHHHHHHHHHSCCTT-CCCCCSSCCEEECCSSCEEEE--ECCHHHHHHHHCSC
T ss_pred             EEeecCCCc----------ccHHHHHHHHHHHHHHHcCCCCc-ccCCCCCCCEEEeCCCCeEEE--cCCHHHHHhcCCCC
Confidence            999998754          56788999999999999975321 114677888877766665554  6543       121


Q ss_pred             EEEcCC-----Cc---cccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhcccCCCccc
Q 013952          366 VLFGDN-----DL---ASATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFAS  431 (433)
Q Consensus       366 ~~~~~~-----~~---~~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (433)
                      +.....     ..   .....+|.|+++  ++++|+|+|++|+.++++ +.++.+|+.++|++||..+.-+-+++++
T Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~klv~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e  442 (463)
T 2r9z_A          366 LTVYETSFTPMRYALNEHGPKTAMKLVCAGPEQRVVGVHVIGDGADEMLQGFAVAVKMGATKADFDNTVAIHPGSAE  442 (463)
T ss_dssp             EEEEEEEECCGGGTTSSSCCCEEEEEEEETTTTEEEEEEEESTTGGGTSHHHHHHHHTTCBHHHHHTSCCCSSSSGG
T ss_pred             EEEEEEEcccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCCHHH
Confidence            221110     00   123567888888  489999999999998885 9999999999999988877655555543

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=100.00  E-value=4.9e-48  Score=380.13  Aligned_cols=396  Identities=19%  Similarity=0.198  Sum_probs=278.0

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCC-CC-CCCccccccCCCCC---------------CCCCCc
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAP-YE-RPALSKAYLFPEGT---------------ARLPGF   65 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~-~~-~~~~~~~~~~~~~~---------------~~~~~~   65 (433)
                      .+|||+|||||+||++||.+|++.|++   |+|||+. ..+ .. +..+.+.++...+.               .....+
T Consensus         8 ~~~DvvVIGgG~aGl~aA~~la~~G~~---V~liEk~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~   84 (483)
T 3dgh_A            8 YDYDLIVIGGGSAGLACAKEAVLNGAR---VACLDFVKPTPTLGTKWGVGGTCVNVGCIPKKLMHQASLLGEAVHEAAAY   84 (483)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCC---EEEECCCCCCTTTTCCCCSSCHHHHHSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCE---EEEEEeccccccccccCCcCCeecccCchhhHHHHHHHHHHHHHHHHHhc
Confidence            368999999999999999999999987   9999953 111 00 00011111100000               000000


Q ss_pred             ccccCCCCC------------------CCCHhHHHhCCcEEEeCceEEEEECCCCEEEeCCCc-EEecceEEEccCCCcc
Q 013952           66 HVCVGSGGE------------------RLLPEWYKEKGIELILSTEIVRADIASKTLLSATGL-IFKYQILVIATGSTVL  126 (433)
Q Consensus        66 ~~~~~~~~~------------------~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~-~~~~d~lvlAtG~~~~  126 (433)
                      .........                  ......++..+++++.+ ....+++....+...++. ++.||+||||||+.|+
T Consensus        85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~a~~~~~~~v~v~~~~g~~~~~~d~lviATGs~p~  163 (483)
T 3dgh_A           85 GWNVDDKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYING-LGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRPR  163 (483)
T ss_dssp             TBCCCCCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECS-EEEEEETTEEEEECTTCCEEEEEEEEEECCCEEEC
T ss_pred             CcccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEccCCEEEEEeCCCeEEEEcCEEEEeCCCCcC
Confidence            000000000                  00112345678999887 455566555556666664 7999999999999998


Q ss_pred             ccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHH
Q 013952          127 RLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADI  206 (433)
Q Consensus       127 ~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~  206 (433)
                      .|+   +||.+.. .+   +..+...+     ...+++++|||+|++|+|+|..|.+.|.+|+++.+. .+++. +++++
T Consensus       164 ~p~---i~G~~~~-~~---~~~~~~~~-----~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~l~~-~d~~~  229 (483)
T 3dgh_A          164 YPD---IPGAVEY-GI---TSDDLFSL-----DREPGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRS-IVLRG-FDQQM  229 (483)
T ss_dssp             CCS---STTHHHH-CB---CHHHHTTC-----SSCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS-CSSTT-SCHHH
T ss_pred             CCC---CCCcccc-cC---cHHHHhhh-----hhcCCcEEEECCCHHHHHHHHHHHHcCCEEEEEeCC-CCCcc-cCHHH
Confidence            887   5664311 11   22222211     114789999999999999999999999999999884 55654 79999


Q ss_pred             HHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCc-----EEECCEEEEcccCccChhhh---hcccccCCCcE
Q 013952          207 AAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGR-----TLEADIVVVGVGGRPLISLF---KGQVAENKGGI  278 (433)
Q Consensus       207 ~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~-----~i~~d~vi~a~G~~p~~~~~---~~~~~~~~g~i  278 (433)
                      .+.+.+.+++.||++++++.+.++...+++. ..+.+.++.     ++++|.|++|+|++|+++++   ..++..++|+|
T Consensus       230 ~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~-~~v~~~~~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~G~i  308 (483)
T 3dgh_A          230 AELVAASMEERGIPFLRKTVPLSVEKQDDGK-LLVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQKDKI  308 (483)
T ss_dssp             HHHHHHHHHHTTCCEEETEEEEEEEECTTSC-EEEEEEETTTCCEEEEEESEEEECSCEEECCGGGTGGGTTCCCBTTBB
T ss_pred             HHHHHHHHHhCCCEEEeCCEEEEEEEcCCCc-EEEEEecCCCCceeEEEcCEEEECcccccCcCcCCchhcCccccCCEE
Confidence            9999999999999999999999998744443 346665543     79999999999999999876   34566655999


Q ss_pred             EeCCCCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEe
Q 013952          279 ETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFY  358 (433)
Q Consensus       279 ~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  358 (433)
                      .||+++||+.|+|||+|||+....         ..+..|..||+++|+||++....  ...|..+|++++..|+++.+  
T Consensus       309 ~vd~~~~t~~~~IyA~GD~~~~~~---------~~~~~A~~~g~~aa~~i~g~~~~--~~~~~~~p~~~~~~p~~a~v--  375 (483)
T 3dgh_A          309 PVDSQEATNVANIYAVGDIIYGKP---------ELTPVAVLAGRLLARRLYGGSTQ--RMDYKDVATTVFTPLEYACV--  375 (483)
T ss_dssp             CCCTTCBCSSTTEEECSTTBTTSC---------CCHHHHHHHHHHHHHHHHSCCCC--CCCCTTCCEEECSSSEEEEE--
T ss_pred             EECcCCccCCCCEEEEEcccCCCC---------ccHHHHHHHHHHHHHHHcCCCCC--cCCCCCCCEEEECCCccEEE--
Confidence            999999999999999999984321         56788999999999999975422  35788899888876766555  


Q ss_pred             cCCCC--------cEEEE--cCCCcc-------ccCCcEEEEEE--e-CCEEEEEEEecCChHHH-HHHHHHHHcCCCCC
Q 013952          359 GDNVG--------DTVLF--GDNDLA-------SATHKFGTYWI--K-DGKVVGVFLESGTPEEN-KAIAKVARVQPSVE  417 (433)
Q Consensus       359 g~~~~--------~~~~~--~~~~~~-------~~~~~~~~~~~--~-~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~  417 (433)
                      |+++.        +.+..  ....+.       ....+|.|+++  + +++|||+|++|++++|+ +.++.||++++|++
T Consensus       376 Glte~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~  455 (483)
T 3dgh_A          376 GLSEEDAVKQFGADEIEVFHGYYKPTEFFIPQKSVRYCYLKAVAERHGDQRVYGLHYIGPVAGEVIQGFAAALKSGLTIN  455 (483)
T ss_dssp             ECCHHHHHHHHCGGGEEEEEEECCCGGGTTTTCCCTTCEEEEEEESSTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHH
T ss_pred             eCCHHHHHhhCCCCCEEEEEEeecchhhhhhccCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHH
Confidence            66642        11111  111110       13568999887  3 69999999999999885 99999999999999


Q ss_pred             ChhhhcccCCCccc
Q 013952          418 SLDVLKNEGLSFAS  431 (433)
Q Consensus       418 ~~~~~~~~~~~~~~  431 (433)
                      ||..+.-+-+++++
T Consensus       456 ~l~~~~~~hPt~~e  469 (483)
T 3dgh_A          456 TLINTVGIHPTTAE  469 (483)
T ss_dssp             HHHTSCCCSSCSGG
T ss_pred             HHhhcccCCCChHH
Confidence            77776555555544

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=100.00  E-value=1.7e-48  Score=383.29  Aligned_cols=396  Identities=16%  Similarity=0.092  Sum_probs=277.7

Q ss_pred             CCCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCC-C---CCCCCCccccccCCC----CCCCCCCcccccCC-
Q 013952            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEV-A---PYERPALSKAYLFPE----GTARLPGFHVCVGS-   71 (433)
Q Consensus         1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~-~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-   71 (433)
                      |+..+|||+|||||+||++||.+|++.|++   |+|||++. .   .+..|..++.++...    .....+.+...... 
T Consensus         4 M~~~~~DvvVIGgG~aGl~aA~~la~~G~~---V~liE~~~~GGtc~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~   80 (492)
T 3ic9_A            4 MKVINVDVAIIGTGTAGMGAYRAAKKHTDK---VVLIEGGAYGTTCARVGCMPSKLLIAAADASYHASQTDLFGIQVDRI   80 (492)
T ss_dssp             CEEEEEEEEEECCSHHHHHHHHHHHTTCSC---EEEEESSCSSCHHHHHSHHHHHHHHHHHHHHHHHTCGGGGTEECSEE
T ss_pred             CccCCCCEEEECCCHHHHHHHHHHHhCCCc---EEEEeCCCCCCcccccChhcCHHHHHHHHHHHHHhhhhhcCcCCCCC
Confidence            443358999999999999999999999987   99999981 1   011111122111100    00111111000000 


Q ss_pred             -CCC----CCC-----------HhHHHh-CCcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCCCC
Q 013952           72 -GGE----RLL-----------PEWYKE-KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVE  134 (433)
Q Consensus        72 -~~~----~~~-----------~~~~~~-~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~  134 (433)
                       ...    ...           ...+.. .+++++.+.... .  +.++|.+.+++++.||+||||||++|..|+.   +
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~a~~-~--~~~~v~~~~~~~~~~d~lViATGs~p~~p~~---~  154 (492)
T 3ic9_A           81 SVNGKAVMKRIQTERDRFVGFVVESVESFDEQDKIRGFAKF-L--DEHTLQVDDHSQVIAKRIVIATGSRPNYPEF---L  154 (492)
T ss_dssp             EECHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGEEESCEEE-E--ETTEEEETTTEEEEEEEEEECCCEECCCCHH---H
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHhhcCeeEEEEEEEE-e--cCCEEEEcCCcEEEeCEEEEccCCCCcCCCC---C
Confidence             000    000           011111 245566653322 2  3567888888899999999999999988763   3


Q ss_pred             CCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHH
Q 013952          135 GADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYY  214 (433)
Q Consensus       135 g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l  214 (433)
                      +.....+++..+..   .+     ...+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.+
T Consensus       155 ~~~~~~v~t~~~~~---~~-----~~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~~l~~~l  225 (492)
T 3ic9_A          155 AAAGSRLLTNDNLF---EL-----NDLPKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANL-QDEEMKRYAEKTF  225 (492)
T ss_dssp             HTTGGGEECHHHHT---TC-----SSCCSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTTC-CCHHHHHHHHHHH
T ss_pred             CccCCcEEcHHHHh---hh-----hhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccc-CCHHHHHHHHHHH
Confidence            33334555433222   11     114799999999999999999999999999999999998875 7999999999999


Q ss_pred             HhcCcEEEcCCeEEEEEecCCCcEEEEEeC--CC--cEEECCEEEEcccCccChhhh---hccccc-CCCcEEeC-CCCC
Q 013952          215 ANKGIKIIKGTVAVGFTTNADGEVKEVKLK--DG--RTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETD-DFFK  285 (433)
Q Consensus       215 ~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~--~g--~~i~~d~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd-~~~~  285 (433)
                      ++. |++++++++.+++.++++  ..+.+.  +|  +++++|.|++|+|++|+++++   ..++.. ++|+|.|| +++|
T Consensus       226 ~~~-V~i~~~~~v~~i~~~~~~--v~v~~~~~~G~~~~i~~D~Vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~~  302 (492)
T 3ic9_A          226 NEE-FYFDAKARVISTIEKEDA--VEVIYFDKSGQKTTESFQYVLAATGRKANVDKLGLENTSIELDKKNSPLFDELTLQ  302 (492)
T ss_dssp             HTT-SEEETTCEEEEEEECSSS--EEEEEECTTCCEEEEEESEEEECSCCEESCSSSCGGGSCCCBCTTCCBCCCTTTCB
T ss_pred             hhC-cEEEECCEEEEEEEcCCE--EEEEEEeCCCceEEEECCEEEEeeCCccCCCCCChhhcCCEECCCCCEeECccccc
Confidence            988 999999999999873333  345553  67  689999999999999999863   346666 57889999 8999


Q ss_pred             CCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCCCc-
Q 013952          286 TSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGD-  364 (433)
Q Consensus       286 t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~-  364 (433)
                      |+.|+|||+|||++.+          +.+..|..||+.||.||.+.... ....+..+|++.+..++++.+  |+++.+ 
T Consensus       303 t~~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~-~~~~~~~~p~~~~~~p~~a~v--Glte~~a  369 (492)
T 3ic9_A          303 TSVDHIFVAGDANNTL----------TLLHEAADDGKVAGTNAGAYPVI-AQGQRRAPLSVVFTEPQVASV--GLSLRQI  369 (492)
T ss_dssp             CSSTTEEECGGGGTSS----------CSHHHHHHHHHHHHHHHHHTTSC-CEECCCCCEEEECSSSEEEEE--ESCHHHH
T ss_pred             CCCCCEEEEEecCCCC----------ccHHHHHHHHHHHHHHHcCCCCC-cccCCCCCcEEEECCCCeEEe--cCCHHHH
Confidence            9999999999999865          56778999999999999974221 235666777766655555544  666421 


Q ss_pred             ----------EEEEcCCCcc--------ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhc
Q 013952          365 ----------TVLFGDNDLA--------SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLK  423 (433)
Q Consensus       365 ----------~~~~~~~~~~--------~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~  423 (433)
                                .+..+..+..        ..+.+|.|+++  ++|+|||+|++|++++|+ +.++.||++++|++||..+.
T Consensus       370 ~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~  449 (492)
T 3ic9_A          370 EDLYADQDAANYVVGQVSFEGQGRSRVMGKNKGLLNVYADRTSGEFLGAEMFGPAAEHIGHLLAWARQQQMTVQAMLTMP  449 (492)
T ss_dssp             HHHCSCSSSCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHTTSC
T ss_pred             HhccCccCCccEEEEEEEeccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCC
Confidence                      2222222111        24568999887  579999999999999886 99999999999999777665


Q ss_pred             ccCCCcc
Q 013952          424 NEGLSFA  430 (433)
Q Consensus       424 ~~~~~~~  430 (433)
                      -+-++++
T Consensus       450 ~~hPt~~  456 (492)
T 3ic9_A          450 FYHPVIE  456 (492)
T ss_dssp             CCTTCTH
T ss_pred             CCCCChH
Confidence            5444443

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=5e-47  Score=373.90  Aligned_cols=401  Identities=19%  Similarity=0.214  Sum_probs=273.6

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCC----CCCCCCccccccCCC---------CCCCC---CCcccc
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVA----PYERPALSKAYLFPE---------GTARL---PGFHVC   68 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~----~~~~~~~~~~~~~~~---------~~~~~---~~~~~~   68 (433)
                      ++||+|||||+||++||.+|++.|++   |+|||++..    .+..|..++.++...         ....+   +.+.+.
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~g~~---V~liE~~~~GG~c~~~gc~P~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~   78 (500)
T 1onf_A            2 VYDLIVIGGGSGGMAAARRAARHNAK---VALVEKSRLGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTKFSFNLP   78 (500)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCC---EEEEESSSTTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCHH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCc---EEEEeCCCcCccccccCCcchHHHHHHHHHHHHHHhhHhcCCccCCccCHH
Confidence            38999999999999999999999887   999999820    011111111110000         00000   000000


Q ss_pred             --cC------CCCCCCCHhHHHhCCcEEEeCceEEEEECCCCEEEeCC-------------CcEEecceEEEccCCCccc
Q 013952           69 --VG------SGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSAT-------------GLIFKYQILVIATGSTVLR  127 (433)
Q Consensus        69 --~~------~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~-------------~~~~~~d~lvlAtG~~~~~  127 (433)
                        ..      ......+...+++.+++++.++. ..++.  +++.+.+             +.++.||+||+|||+.|..
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~-~~id~--~~v~v~~~~~~~~~~~~~~~~~~~~~d~lViAtGs~p~~  155 (500)
T 1onf_A           79 LLVERRDKYIQRLNNIYRQNLSKDKVDLYEGTA-SFLSE--NRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVF  155 (500)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCC-CCC----------------------------CBSSEEECCCCCBCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEE-EEeeC--CEEEEEeccccccccccCCCceEEEeCEEEECCCCCCCC
Confidence              00      00000122344678999998843 33443  4455433             5679999999999999988


Q ss_pred             cCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHH
Q 013952          128 LTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIA  207 (433)
Q Consensus       128 ~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~  207 (433)
                      |+   ++|.+  .+++.   .++..+    +  .+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.
T Consensus       156 p~---i~G~~--~~~~~---~~~~~~----~--~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~  220 (500)
T 1onf_A          156 PP---VKGIE--NTISS---DEFFNI----K--ESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRK-FDESVI  220 (500)
T ss_dssp             CS---CTTGG--GCEEH---HHHTTC----C--CCSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTT-SCHHHH
T ss_pred             CC---CCCCC--cccCH---HHHhcc----C--CCCeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccCcc-cchhhH
Confidence            77   56642  23332   222211    1  2789999999999999999999999999999999998875 899999


Q ss_pred             HHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcE-EECCEEEEcccCccChh-h-h-hcccccCCCcEEeCCC
Q 013952          208 AFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRT-LEADIVVVGVGGRPLIS-L-F-KGQVAENKGGIETDDF  283 (433)
Q Consensus       208 ~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~-i~~d~vi~a~G~~p~~~-~-~-~~~~~~~~g~i~vd~~  283 (433)
                      +.+.+.+++.||+++++++|.+++.++++. ..+.+.+|++ +++|.|++|+|++|+++ + + ..++..++|+|.||++
T Consensus       221 ~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~-~~v~~~~g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~~~G~i~vd~~  299 (500)
T 1onf_A          221 NVLENDMKKNNINIVTFADVVEIKKVSDKN-LSIHLSDGRIYEHFDHVIYCVGRSPDTENLKLEKLNVETNNNYIVVDEN  299 (500)
T ss_dssp             HHHHHHHHHTTCEEECSCCEEEEEESSTTC-EEEEETTSCEEEEESEEEECCCBCCTTTTSSCTTTTCCBSSSCEEECTT
T ss_pred             HHHHHHHHhCCCEEEECCEEEEEEEcCCce-EEEEECCCcEEEECCEEEECCCCCcCCCCCCchhcCccccCCEEEECCC
Confidence            999999999999999999999998733333 4678888887 99999999999999996 3 2 3456567788999999


Q ss_pred             CCCCCCCeEEcCccccccccc-----------------------cC-cccccccHHHHHHHHHHHHHHHhccCCCCCccC
Q 013952          284 FKTSADDVYAVGDVATFPMKL-----------------------YR-EMRRVEHVDHARKSAEQAVKTIMATEGGKTVTG  339 (433)
Q Consensus       284 ~~t~~~~vfa~Gd~~~~~~~~-----------------------~~-~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~  339 (433)
                      +||+.|+|||+|||+..+...                       .+ ......++..|.+||+++|+||.+...  ....
T Consensus       300 ~~t~~~~iya~GD~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~g~~~--~~~~  377 (500)
T 1onf_A          300 QRTSVNNIYAVGDCCMVKKSKEIEDLNLLKLYNEERYLNKKENVTEDIFYNVQLTPVAINAGRLLADRLFLKKT--RKTN  377 (500)
T ss_dssp             CBCSSSSEEECSTTEEEC------------------------------CBCCCCHHHHHHHHHHHHHHHHSCTT--CCCC
T ss_pred             cccCCCCEEEEeccccccccccccccccccccccccccccccccccccCCcccchhHHHHHHHHHHHHHhCCCC--ccCC
Confidence            999999999999999532110                       00 001336889999999999999997432  2356


Q ss_pred             CCCCCeEEEeecccceEEecCCCC--------cEEEEc-----CCC-------ccccCCcEEEEEE--eCCEEEEEEEec
Q 013952          340 YDYLPYFYSRAFDLSWQFYGDNVG--------DTVLFG-----DND-------LASATHKFGTYWI--KDGKVVGVFLES  397 (433)
Q Consensus       340 ~~~~p~~~~~~~~~~~~~~g~~~~--------~~~~~~-----~~~-------~~~~~~~~~~~~~--~~~~l~G~~~~g  397 (433)
                      |..+|++.+..++++.+  |+++.        ..+...     ...       ......+|.|+++  ++++|+|+|++|
T Consensus       378 ~~~~p~~~~~~~~~a~v--Gl~e~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g  455 (500)
T 1onf_A          378 YKLIPTVIFSHPPIGTI--GLSEEAAIQIYGKENVKIYESKFTNLFFSVYDIEPELKEKTYLKLVCVGKDELIKGLHIIG  455 (500)
T ss_dssp             CSSCCEEECCSSCEEEE--ECCHHHHHHHTCGGGEEEEEEEECCGGGTTSCSCGGGSCCEEEEEEEETTTTEEEEEEEES
T ss_pred             CCCCCeEEEcCcceEEE--eCCHHHHHhcCCCccEEEEEEECchhhhhhccccccCCCceEEEEEEECCCCEEEEEEEEC
Confidence            77788877655555444  66531        112211     111       1123567889888  579999999999


Q ss_pred             CChHHH-HHHHHHHHcCCCCCChhhhcccCCCccc
Q 013952          398 GTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFAS  431 (433)
Q Consensus       398 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (433)
                      +.++++ +.++.+|+.++|++||..+.-+-+++++
T Consensus       456 ~~a~~~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e  490 (500)
T 1onf_A          456 LNADEIVQGFAVALKMNATKKDFDETIPIHPTAAE  490 (500)
T ss_dssp             TTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTCSTT
T ss_pred             CCHHHHHHHHHHHHHcCCCHHHHhccccCCCCHHH
Confidence            998885 9999999999999988877555555443

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=100.00  E-value=1.5e-47  Score=378.79  Aligned_cols=397  Identities=18%  Similarity=0.167  Sum_probs=276.6

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCC-CccccccCC-----------CCC----CCCCCcc
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERP-ALSKAYLFP-----------EGT----ARLPGFH   66 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~-~~~~~~~~~-----------~~~----~~~~~~~   66 (433)
                      .+|||+|||||+||++||..|++.|++   |+|||+. ...+... .+.+.+...           ...    .....+.
T Consensus        31 ~~~DVvVIGgGpaGl~aA~~la~~G~~---V~liEk~~~~~~~~~~~~GGtc~~~GciPsk~l~~~~~~~~~~~~~~~~g  107 (519)
T 3qfa_A           31 YDYDLIIIGGGSGGLAAAKEAAQYGKK---VMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYG  107 (519)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCC---EEEECCCCCCTTCCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCe---EEEEeccCccccccCCCcccccCCcCccchHHHHHHHHHHHHHHHHHhcC
Confidence            368999999999999999999999987   9999985 2211110 111111100           000    0000000


Q ss_pred             cccCCC------------------CCCCCHhHHHhCCcEEEeCceEEEEECCCCEEEeCCCc--EEecceEEEccCCCcc
Q 013952           67 VCVGSG------------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGL--IFKYQILVIATGSTVL  126 (433)
Q Consensus        67 ~~~~~~------------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~--~~~~d~lvlAtG~~~~  126 (433)
                      ......                  ........++..+++++.+ .+..+++....|...+++  ++.||+||||||++|+
T Consensus       108 ~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~~i~g-~a~~~d~~~v~v~~~~g~~~~i~~d~lViATGs~p~  186 (519)
T 3qfa_A          108 WKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENA-YGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPR  186 (519)
T ss_dssp             BCCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECS-EEEEEETTEEEEECTTCCCCEEEEEEEEECCCEEEC
T ss_pred             cccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEeeCCEEEEEcCCCCEEEEECCEEEEECCCCcC
Confidence            000000                  0001112345679999987 566677665566666664  7999999999999998


Q ss_pred             ccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHH
Q 013952          127 RLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADI  206 (433)
Q Consensus       127 ~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~  206 (433)
                      .|+   +||... .++   +..++..+    . ..+++++|||+|++|+|+|..|.+.|.+|+++++. .+++. +++++
T Consensus       187 ~p~---i~G~~~-~~~---t~~~~~~l----~-~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~-~~l~~-~d~~~  252 (519)
T 3qfa_A          187 YLG---IPGDKE-YCI---SSDDLFSL----P-YCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILLRG-FDQDM  252 (519)
T ss_dssp             CCC---CTTHHH-HCB---CHHHHTTC----S-SCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CSSTT-SCHHH
T ss_pred             CCC---CCCccC-ceE---cHHHHhhh----h-hcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecc-ccccc-CCHHH
Confidence            876   566321 122   22222211    1 24789999999999999999999999999999884 56665 79999


Q ss_pred             HHHHHHHHHhcCcEEEcCCeEEEEEecCC---Cc-EEEEEeCCC-c--EEECCEEEEcccCccChhhh---hcccccC--
Q 013952          207 AAFYEGYYANKGIKIIKGTVAVGFTTNAD---GE-VKEVKLKDG-R--TLEADIVVVGVGGRPLISLF---KGQVAEN--  274 (433)
Q Consensus       207 ~~~l~~~l~~~GV~v~~~~~v~~i~~~~~---g~-~~~v~~~~g-~--~i~~d~vi~a~G~~p~~~~~---~~~~~~~--  274 (433)
                      .+.+.+.+++.||++++++.+.++...++   +. ...+...+| +  ++++|.|++|+|++|+++++   ..++..+  
T Consensus       253 ~~~~~~~l~~~GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~  332 (519)
T 3qfa_A          253 ANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEK  332 (519)
T ss_dssp             HHHHHHHHHHTTCEEEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCEEESCSSSCSTTTTCCCCTT
T ss_pred             HHHHHHHHHHCCCEEEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCCcccCCCCChhhcCcEEcCC
Confidence            99999999999999999998888865332   22 223334455 2  57899999999999999853   3456663  


Q ss_pred             CCcEEeCCCCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccc
Q 013952          275 KGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLS  354 (433)
Q Consensus       275 ~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~  354 (433)
                      +|+|.||+++||+.|+|||+|||+....         .++..|..||+++|+||++....  ...|..+|++.+..++++
T Consensus       333 ~G~I~Vd~~~~Ts~~~IyA~GD~~~g~~---------~~~~~A~~~g~~aa~~i~g~~~~--~~~~~~~p~~~~~~p~~a  401 (519)
T 3qfa_A          333 TGKIPVTDEEQTNVPYIYAIGDILEDKV---------ELTPVAIQAGRLLAQRLYAGSTV--KCDYENVPTTVFTPLEYG  401 (519)
T ss_dssp             TCCBCCCTTSBCSSTTEEECGGGBSSSC---------CCHHHHHHHHHHHHHHHHSCCCC--CCCCTTCCEEECSSSCEE
T ss_pred             CCeEeeCCCCccCCCCEEEEEeccCCCC---------ccHHHHHHHHHHHHHHHcCCCCc--cCCCCcCcEEEECCCceE
Confidence            6889999999999999999999984221         56788999999999999975432  357778888877666665


Q ss_pred             eEEecCCCCc--------EEEEcC--CCc-------cccCCcEEEEEEe---CCEEEEEEEecCChHHH-HHHHHHHHcC
Q 013952          355 WQFYGDNVGD--------TVLFGD--NDL-------ASATHKFGTYWIK---DGKVVGVFLESGTPEEN-KAIAKVARVQ  413 (433)
Q Consensus       355 ~~~~g~~~~~--------~~~~~~--~~~-------~~~~~~~~~~~~~---~~~l~G~~~~g~~~~~~-~~~~~~~~~~  413 (433)
                      .+  |+++.+        .+....  ..+       ...+.+|.|++++   +++|||+|++|++++|+ +.++.||+++
T Consensus       402 ~v--Glte~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~~ilGa~i~g~~a~e~i~~~~~ai~~~  479 (519)
T 3qfa_A          402 AC--GLSEEKAVEKFGEENIEVYHSYFWPLEWTIPSRDNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCG  479 (519)
T ss_dssp             EE--ECCHHHHHHHHCGGGEEEEEEEECCHHHHTTTCCTTTEEEEEEEETTTTCEEEEEEEESTTHHHHHHHHHHHHHTT
T ss_pred             Ee--cCCHHHHHhhCCCCCEEEEEEeccchhhhhhccCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCC
Confidence            55  766421        121111  100       0135689998873   59999999999998885 9999999999


Q ss_pred             CCCCChhhhcccCCCccc
Q 013952          414 PSVESLDVLKNEGLSFAS  431 (433)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~  431 (433)
                      +|++||..+.-+-+++++
T Consensus       480 ~t~~~l~~~~~~hPt~~E  497 (519)
T 3qfa_A          480 LTKKQLDSTIGIHPVCAE  497 (519)
T ss_dssp             CBHHHHHHSCCCTTCGGG
T ss_pred             CCHHHHhccccCCCChHH
Confidence            999988776666555554

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=100.00  E-value=4.7e-46  Score=363.45  Aligned_cols=391  Identities=23%  Similarity=0.268  Sum_probs=278.1

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCC----CCCCCccccccCCCC----C-CCCCCccccc-CCC-
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAP----YERPALSKAYLFPEG----T-ARLPGFHVCV-GSG-   72 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~----~~~~~~~~~~~~~~~----~-~~~~~~~~~~-~~~-   72 (433)
                      +|||+|||||+||+++|.+|++.|++   |+|||++ ...    ...|..++.++....    . ....++.... ..+ 
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~---V~lie~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~g~~~~~~~~~~   77 (455)
T 2yqu_A            1 MYDLLVIGAGPGGYVAAIRAAQLGMK---VGVVEKEKALGGTCLRVGCIPSKALLETTERIYEAKKGLLGAKVKGVELDL   77 (455)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHCCTTEEECCEEECH
T ss_pred             CCCEEEECCChhHHHHHHHHHHCCCe---EEEEeCCCCCCCccceecchhHHHHHHHHHHHHHHhhhcCCcccCCCccCH
Confidence            37999999999999999999999987   9999998 210    000111111110000    0 0000000000 000 


Q ss_pred             -------------CCCCCHhHHHhCCcEEEeCceEEEEECCCCEEEeC-CCcEEecceEEEccCCCccccCCCCCCCCCC
Q 013952           73 -------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSA-TGLIFKYQILVIATGSTVLRLTDFGVEGADA  138 (433)
Q Consensus        73 -------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~-~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~  138 (433)
                                   ....+..++++.+++++.++.+ .++  .+.+.+. ++.++.||+||+|||++|..|+   +++.+.
T Consensus        78 ~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~-~i~--~~~~~v~~~g~~~~~d~lviAtG~~p~~~~---~~g~~~  151 (455)
T 2yqu_A           78 PALMAHKDKVVQANTQGVEFLFKKNGIARHQGTAR-FLS--ERKVLVEETGEELEARYILIATGSAPLIPP---WAQVDY  151 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEE-ESS--SSEEEETTTCCEEEEEEEEECCCEEECCCT---TBCCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEE-Eec--CCeEEEeeCCEEEEecEEEECCCCCCCCCC---CCCCCc
Confidence                         0001134556679999998544 343  3444443 5678999999999999998877   455443


Q ss_pred             CCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcC
Q 013952          139 KNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKG  218 (433)
Q Consensus       139 ~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~G  218 (433)
                      .++++.   .++..+    . ..+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.+.+++.|
T Consensus       152 ~~v~~~---~~~~~~----~-~~~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l~~-~~~~~~~~l~~~l~~~G  222 (455)
T 2yqu_A          152 ERVVTS---TEALSF----P-EVPKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILPT-MDLEVSRAAERVFKKQG  222 (455)
T ss_dssp             SSEECH---HHHTCC----S-SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-SCHHHHHHHHHHHHHHT
T ss_pred             CcEech---HHhhcc----c-cCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCccccc-cCHHHHHHHHHHHHHCC
Confidence            455533   222211    1 14789999999999999999999999999999999988875 79999999999999999


Q ss_pred             cEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh---hccccc-CCCcEEeCCCCCCCCCCeEEc
Q 013952          219 IKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSADDVYAV  294 (433)
Q Consensus       219 V~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~vfa~  294 (433)
                      |+++++++|++++.+  +....+.+.+|+++++|.||+|+|++|+..++   ..++.. .+|++.||+++||+.|+|||+
T Consensus       223 v~i~~~~~V~~i~~~--~~~v~v~~~~g~~i~~D~vv~A~G~~p~~~~l~~~~~g~~~~~~g~i~vd~~~~t~~~~iya~  300 (455)
T 2yqu_A          223 LTIRTGVRVTAVVPE--AKGARVELEGGEVLEADRVLVAVGRRPYTEGLSLENAGLSTDERGRIPVDEHLRTRVPHIYAI  300 (455)
T ss_dssp             CEEECSCCEEEEEEE--TTEEEEEETTSCEEEESEEEECSCEEECCTTCCGGGGTCCCCTTSCCCCCTTSBCSSTTEEEC
T ss_pred             CEEEECCEEEEEEEe--CCEEEEEECCCeEEEcCEEEECcCCCcCCCCCChhhcCCccCCCCcEeECCCcccCCCCEEEE
Confidence            999999999999873  22356777788899999999999999998763   335655 457899999999999999999


Q ss_pred             CccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCC------CcEEEE
Q 013952          295 GDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV------GDTVLF  368 (433)
Q Consensus       295 Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~------~~~~~~  368 (433)
                      |||+..+          ..+..|..||+.+|.||.+..   ....+..+|++....+  .+..+|.++      +..+..
T Consensus       301 GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~---~~~~~~~~p~~~~~~~--~~a~~G~~~~~a~~~g~~~~~  365 (455)
T 2yqu_A          301 GDVVRGP----------MLAHKASEEGIAAVEHMVRGF---GHVDYQAIPSVVYTHP--EIAAVGYTEEELKAQGIPYKV  365 (455)
T ss_dssp             GGGSSSC----------CCHHHHHHHHHHHHHHHHHSC---CCCCGGGCCEEECSSS--EEEEEECCHHHHHHHTCCEEE
T ss_pred             ecCCCCc----------cCHHHHHHhHHHHHHHHcCCC---ccCCCCCCCEEEEcCC--ceEEEECCHHHHHHcCCCEEE
Confidence            9999765          467789999999999999742   1245566776654444  444556553      222333


Q ss_pred             cCCCcc--------ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhcccCCCcc
Q 013952          369 GDNDLA--------SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFA  430 (433)
Q Consensus       369 ~~~~~~--------~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (433)
                      +..+..        ....+|.|+++  ++|+|+|++++|+.+.++ +.++.+|++++|++|+..+..+-++|+
T Consensus       366 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~~~~~~~~~Pt~~  438 (455)
T 2yqu_A          366 GKFPYSASGRARAMGETEGFIKVLAHAKTDRILGVHGIGARVGDVLAEAALALFFKASAEDLGRAPHAHPSLS  438 (455)
T ss_dssp             EEEEGGGCHHHHHHTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCTH
T ss_pred             EEEEcccchHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCCHH
Confidence            222111        23467889888  489999999999988885 999999999999998877655555544

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=100.00  E-value=5.9e-47  Score=372.71  Aligned_cols=395  Identities=19%  Similarity=0.187  Sum_probs=275.7

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCC-CCCccccccCC-----------CC---------CCCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYE-RPALSKAYLFP-----------EG---------TARL   62 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~-~~~~~~~~~~~-----------~~---------~~~~   62 (433)
                      +|||+|||||+||++||..|++.|++   |+|||+. ..++. +..+.+.++..           ..         ...+
T Consensus         6 ~~DvvVIG~G~aGl~aA~~la~~G~~---V~liEk~~~~~~~~~~~~GGtc~~~gciPsk~l~~~~~~~~~~~~~~~~g~   82 (488)
T 3dgz_A            6 SFDLLVIGGGSGGLACAKEAAQLGKK---VAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQAALLGGMIRDAHHYGW   82 (488)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCC---EEEECCCCCCTTSCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCe---EEEEEecccccccccCCcCCeecccCCcccHHHHHHHHHHHHHHHHHhcCc
Confidence            58999999999999999999999987   9999974 22211 11111111100           00         0000


Q ss_pred             -----CCcccc--c------CCCCCCCCHhHHHhCCcEEEeCceEEEEECCCCEEEeCCC--cEEecceEEEccCCCccc
Q 013952           63 -----PGFHVC--V------GSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATG--LIFKYQILVIATGSTVLR  127 (433)
Q Consensus        63 -----~~~~~~--~------~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~--~~~~~d~lvlAtG~~~~~  127 (433)
                           +...+.  .      ...........++..+++++.+ .+..+++....+...++  .++.||+||||||+.|..
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~g-~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~  161 (488)
T 3dgz_A           83 EVAQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNI-KASFVDEHTVRGVDKGGKATLLSAEHIVIATGGRPRY  161 (488)
T ss_dssp             CCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECC-EEEESSSSEEEEECTTSCEEEEEEEEEEECCCEEECC
T ss_pred             ccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEccCCeEEEEeCCCceEEEECCEEEEcCCCCCCC
Confidence                 000000  0      0000001122345679999886 55555554445555566  479999999999999987


Q ss_pred             cCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHH
Q 013952          128 LTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIA  207 (433)
Q Consensus       128 ~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~  207 (433)
                      |+.  +||.+. ..+   +..++..+    . ..+++++|||+|++|+|+|..|.+.|.+|+++++.. +++. +++++.
T Consensus       162 p~~--i~G~~~-~~~---~~~~~~~~----~-~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~-~l~~-~d~~~~  228 (488)
T 3dgz_A          162 PTQ--VKGALE-YGI---TSDDIFWL----K-ESPGKTLVVGASYVALECAGFLTGIGLDTTVMMRSI-PLRG-FDQQMS  228 (488)
T ss_dssp             CSS--CBTHHH-HCB---CHHHHTTC----S-SCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-SSTT-SCHHHH
T ss_pred             CCC--CCCccc-ccC---cHHHHHhh----h-hcCCeEEEECCCHHHHHHHHHHHHcCCceEEEEcCc-cccc-CCHHHH
Confidence            761  355321 111   22222221    1 157899999999999999999999999999998864 5554 799999


Q ss_pred             HHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCC---Cc--EEECCEEEEcccCccChhhh---hcccccC--CCc
Q 013952          208 AFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD---GR--TLEADIVVVGVGGRPLISLF---KGQVAEN--KGG  277 (433)
Q Consensus       208 ~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~---g~--~i~~d~vi~a~G~~p~~~~~---~~~~~~~--~g~  277 (433)
                      +.+.+.+++.||++++++.+.++...+++. ..+.+.+   |+  ++++|.|++|+|++|+++++   ..++..+  +|+
T Consensus       229 ~~l~~~l~~~gv~~~~~~~v~~i~~~~~~~-~~v~~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~~G~  307 (488)
T 3dgz_A          229 SLVTEHMESHGTQFLKGCVPSHIKKLPTNQ-LQVTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQK  307 (488)
T ss_dssp             HHHHHHHHHTTCEEEETEEEEEEEECTTSC-EEEEEEETTTTEEEEEEESEEEECSCEEESCGGGTGGGGTCCBCSSSCC
T ss_pred             HHHHHHHHHCCCEEEeCCEEEEEEEcCCCc-EEEEEEeCCCCeeEEEECCEEEEcccCCcccCcCCccccCcEecCCCCe
Confidence            999999999999999999999998743443 3444433   54  47999999999999999874   3456654  688


Q ss_pred             EEeCCCCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEE
Q 013952          278 IETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQF  357 (433)
Q Consensus       278 i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  357 (433)
                      |.||+++||+.|+|||+|||+....         .++..|..||+++|.||++....  ...|..+|++++..++++.+ 
T Consensus       308 i~vd~~~~t~~~~IyA~GD~~~~~~---------~~~~~A~~~g~~aa~~i~g~~~~--~~~~~~~p~~~~~~p~~a~v-  375 (488)
T 3dgz_A          308 IIVDAQEATSVPHIYAIGDVAEGRP---------ELTPTAIKAGKLLAQRLFGKSST--LMDYSNVPTTVFTPLEYGCV-  375 (488)
T ss_dssp             BCCCTTSBCSSTTEEECGGGBTTCC---------CCHHHHHHHHHHHHHHHHSCCCC--CCCCTTCCEEECSSSEEEEE-
T ss_pred             EeECCCCccCCCCEEEeEEecCCCC---------cchhHHHHHHHHHHHHHcCCCCc--cCCCCCCCEEEECCCCeEEE-
Confidence            9999999999999999999985321         56778999999999999975432  25778899888776666555 


Q ss_pred             ecCCCC--------cEEEEc--CCCcc-------ccCCcEEEEEEe---CCEEEEEEEecCChHHH-HHHHHHHHcCCCC
Q 013952          358 YGDNVG--------DTVLFG--DNDLA-------SATHKFGTYWIK---DGKVVGVFLESGTPEEN-KAIAKVARVQPSV  416 (433)
Q Consensus       358 ~g~~~~--------~~~~~~--~~~~~-------~~~~~~~~~~~~---~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~  416 (433)
                       |+++.        ..+...  ...+.       ..+.+|.|++++   +++|||+|++|++++|+ +.++.||++++|+
T Consensus       376 -Glte~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~k~i~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~  454 (488)
T 3dgz_A          376 -GLSEEEAVALHGQEHVEVYHAYYKPLEFTVADRDASQCYIKMVCMREPPQLVLGLHFLGPNAGEVTQGFALGIKCGASY  454 (488)
T ss_dssp             -ECCHHHHHHHHCGGGEEEEEEECCCHHHHHTTCCCTTCEEEEEEESSTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBH
T ss_pred             -eCCHHHHHhhCCCCcEEEEEccccchhhhhhccCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCH
Confidence             66642        112111  11111       125789998874   69999999999998885 9999999999999


Q ss_pred             CChhhhcccCCCcc
Q 013952          417 ESLDVLKNEGLSFA  430 (433)
Q Consensus       417 ~~~~~~~~~~~~~~  430 (433)
                      +||..+.-+-++++
T Consensus       455 ~~l~~~~~~hPt~~  468 (488)
T 3dgz_A          455 AQVMQTVGIHPTCS  468 (488)
T ss_dssp             HHHHTSCCCSSCST
T ss_pred             HHHhccccCCCChH
Confidence            98877655555544

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=1.1e-45  Score=360.54  Aligned_cols=387  Identities=22%  Similarity=0.230  Sum_probs=274.6

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CC---CCCCCCccccccCCCC-------CCCC--CCcccccCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VA---PYERPALSKAYLFPEG-------TARL--PGFHVCVGS   71 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~---~~~~~~~~~~~~~~~~-------~~~~--~~~~~~~~~   71 (433)
                      ++||+|||||+||++||.+|++.|++   |+|||++ ..   .+..|..++.++....       ....  .++......
T Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~---V~lie~~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~~g~~~~~~~   81 (458)
T 1lvl_A            5 QTTLLIIGGGPGGYVAAIRAGQLGIP---TVLVEGQALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASPR   81 (458)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHTCC---EEEECSSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCE---EEEEccCCCCCcCCCcCcHhHHHHHHHHHHHHHHhhcccccccCcccCCCc
Confidence            58999999999999999999999987   9999996 10   0111112221110000       0000  000000000


Q ss_pred             CCCC---------------CCHhHHHhCCcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCCCCCC
Q 013952           72 GGER---------------LLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGA  136 (433)
Q Consensus        72 ~~~~---------------~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~  136 (433)
                      ....               ....++++.+++++.++.+. ++  .++|.+.+ +++.||+||||||++|+.|+.  ++ .
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~-~~--~~~v~v~~-~~~~~d~lviATGs~p~~~~~--~~-~  154 (458)
T 1lvl_A           82 LDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKV-LD--GKQVEVDG-QRIQCEHLLLATGSSSVELPM--LP-L  154 (458)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEE-EE--TTEEEETT-EEEECSEEEECCCEEECCBTT--BC-C
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEE-cc--CCEEEEee-EEEEeCEEEEeCCCCCCCCCC--CC-c
Confidence            0000               01245667899999986554 44  56787766 789999999999999987653  33 2


Q ss_pred             CCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHh
Q 013952          137 DAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYAN  216 (433)
Q Consensus       137 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~  216 (433)
                      + ..++   +..+...+    +. .+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.+.+++
T Consensus       155 ~-~~v~---~~~~~~~~----~~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~  224 (458)
T 1lvl_A          155 G-GPVI---SSTEALAP----KA-LPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPT-YDSELTAPVAESLKK  224 (458)
T ss_dssp             B-TTEE---CHHHHTCC----SS-CCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHH
T ss_pred             c-CcEe---cHHHHhhh----hc-cCCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCccccc-cCHHHHHHHHHHHHH
Confidence            2 2344   33333221    11 4789999999999999999999999999999999999884 899999999999999


Q ss_pred             cCcEEEcCCeEEEEEecCCCcEEEEEeCCC--cEEECCEEEEcccCccChhhh---hcccccCCCcEEeCCCCCCCCCCe
Q 013952          217 KGIKIIKGTVAVGFTTNADGEVKEVKLKDG--RTLEADIVVVGVGGRPLISLF---KGQVAENKGGIETDDFFKTSADDV  291 (433)
Q Consensus       217 ~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g--~~i~~d~vi~a~G~~p~~~~~---~~~~~~~~g~i~vd~~~~t~~~~v  291 (433)
                      .||+++++++|.+++.  ++  ..+...+|  +++++|.|++|+|++|+++++   ..++..++++|.||++|||+.|+|
T Consensus       225 ~gv~i~~~~~v~~i~~--~~--v~v~~~~G~~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~~i~vd~~~~t~~~~I  300 (458)
T 1lvl_A          225 LGIALHLGHSVEGYEN--GC--LLANDGKGGQLRLEADRVLVAVGRRPRTKGFNLECLDLKMNGAAIAIDERCQTSMHNV  300 (458)
T ss_dssp             HTCEEETTCEEEEEET--TE--EEEECSSSCCCEECCSCEEECCCEEECCSSSSGGGSCCCEETTEECCCTTCBCSSTTE
T ss_pred             CCCEEEECCEEEEEEe--CC--EEEEECCCceEEEECCEEEECcCCCcCCCCCCcHhcCCcccCCEEeECCCCcCCCCCE
Confidence            9999999999999975  22  34554456  689999999999999999753   335555322899999999999999


Q ss_pred             EEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCC------CcE
Q 013952          292 YAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV------GDT  365 (433)
Q Consensus       292 fa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~------~~~  365 (433)
                      ||+|||+..+          ..+..|..||+.+|.||.+..   ....+..+|++.+..++  +..+|.++      +..
T Consensus       301 ya~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~---~~~~~~~~p~~~~~~p~--~a~vG~~e~~a~~~g~~  365 (458)
T 1lvl_A          301 WAIGDVAGEP----------MLAHRAMAQGEMVAEIIAGKA---RRFEPAAIAAVCFTDPE--VVVVGKTPEQASQQGLD  365 (458)
T ss_dssp             EECGGGGCSS----------CCHHHHHHHHHHHHHHHTTCC---CCCCCSCCCEEECSSSE--EEEEECCHHHHHHTTCC
T ss_pred             EEeeccCCCc----------ccHHHHHHHHHHHHHHhcCCC---ccCCCCCCCEEEECCCC--eEEEeCCHHHHHHcCCC
Confidence            9999999865          467789999999999999742   12456677776554444  44456653      222


Q ss_pred             EEEcCCCcc--------ccCCcEEEEEE--eCCEEEEEEEecCChHH-HHHHHHHHHcCCCCCChhhhcccCCCcc
Q 013952          366 VLFGDNDLA--------SATHKFGTYWI--KDGKVVGVFLESGTPEE-NKAIAKVARVQPSVESLDVLKNEGLSFA  430 (433)
Q Consensus       366 ~~~~~~~~~--------~~~~~~~~~~~--~~~~l~G~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (433)
                      +..+..+..        ....+|.|+++  ++++|+|++++|+.+.+ ++.++.+|++++|++|+..+.-+-++++
T Consensus       366 ~~~~~~~~~~~~~~~~~~~~~g~~kl~~d~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~  441 (458)
T 1lvl_A          366 CIVAQFPFAANGRAMSLESKSGFVRVVARRDNHLILGWQAVGVAVSELSTAFAQSLEMGACLEDVAGTIHAHPTLG  441 (458)
T ss_dssp             EEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTGGGHHHHHHHHHHHTCBHHHHHTSCCCTTCTT
T ss_pred             EEEEEEECccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcCCCCCHH
Confidence            333222110        23467999888  57999999999999888 4999999999999997776654444443

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=100.00  E-value=2.5e-44  Score=362.72  Aligned_cols=394  Identities=17%  Similarity=0.194  Sum_probs=271.6

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCC-CccccccCCCC----------------------C
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERP-ALSKAYLFPEG----------------------T   59 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~-~~~~~~~~~~~----------------------~   59 (433)
                      ..+||+||||||||++||.+|++.|++   |+|+|+. ..+.... .+.+.++....                      .
T Consensus       106 ~~~dvvVIG~GpAGl~aA~~l~~~g~~---v~liE~~~~~~~g~~~~~GG~~~~~g~iP~~~l~~~~~~~~~~~~~~~~g  182 (598)
T 2x8g_A          106 YDYDLIVIGGGSGGLAAGKEAAKYGAK---TAVLDYVEPTPIGTTWGLGGTCVNVGCIPKKLMHQAGLLSHALEDAEHFG  182 (598)
T ss_dssp             SSEEEEEECCSHHHHHHHHHHHHTTCC---EEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccccEEEECCCccHHHHHHHHHhCCCe---EEEEeccCCcccccccccCceEeccCCCchHHHHHHHHHHHHHhhHHhCC
Confidence            358999999999999999999999987   9999974 2211111 11111100000                      0


Q ss_pred             CCCCCcccccCCCCCCC---------------CHhHHHhCCcEEEeCceEEEEECCCCEEEeCCC--cEEecceEEEccC
Q 013952           60 ARLPGFHVCVGSGGERL---------------LPEWYKEKGIELILSTEIVRADIASKTLLSATG--LIFKYQILVIATG  122 (433)
Q Consensus        60 ~~~~~~~~~~~~~~~~~---------------~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~--~~~~~d~lvlAtG  122 (433)
                      ...+...  .. .....               ....+...+++++.+ ....++.....+...+|  .++.||+||||||
T Consensus       183 ~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~-~~~~~~~~~v~v~~~~g~~~~~~~d~lviAtG  258 (598)
T 2x8g_A          183 WSLDRSK--IS-HNWSTMVEGVQSHIGSLNWGYKVALRDNQVTYLNA-KGRLISPHEVQITDKNQKVSTITGNKIILATG  258 (598)
T ss_dssp             CCCCGGG--CC-CCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECS-EEEEEETTEEEEECTTCCEEEEEEEEEEECCC
T ss_pred             ccccCCc--Cc-cCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEE-EEEEcCCCEEEEEeCCCCeEEEEeCEEEEeCC
Confidence            0000000  00 00000               011244578999876 55556654444444556  4699999999999


Q ss_pred             CCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCC
Q 013952          123 STVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLF  202 (433)
Q Consensus       123 ~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~  202 (433)
                      ++|+.|+   +||.+. ..++.   .++..    + ...+++++|||+|++|+|+|..|++.|.+|+++++. .+++. +
T Consensus       259 s~p~~p~---i~G~~~-~~~~~---~~~~~----~-~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~l~~-~  324 (598)
T 2x8g_A          259 ERPKYPE---IPGAVE-YGITS---DDLFS----L-PYFPGKTLVIGASYVALECAGFLASLGGDVTVMVRS-ILLRG-F  324 (598)
T ss_dssp             EEECCCS---STTHHH-HCEEH---HHHTT----C-SSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CSSTT-S
T ss_pred             CCCCCCC---CCCccc-ceEcH---HHHhh----C-ccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC-cCcCc-C
Confidence            9998877   566431 12221   12111    1 124789999999999999999999999999999987 55554 7


Q ss_pred             CHHHHHHHHHHHHhcCcEEEcCCeEEEEEec-----CC---CcE-EEEEeCCCcEEE--CCEEEEcccCccChhhh---h
Q 013952          203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTN-----AD---GEV-KEVKLKDGRTLE--ADIVVVGVGGRPLISLF---K  268 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~-----~~---g~~-~~v~~~~g~~i~--~d~vi~a~G~~p~~~~~---~  268 (433)
                      ++++.+.+.+.+++.||++++++.+.++...     .+   +.+ ..+.+.+|++++  +|.|++|+|++|+++++   .
T Consensus       325 d~~~~~~~~~~l~~~gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~~~~  404 (598)
T 2x8g_A          325 DQQMAEKVGDYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLCET  404 (598)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEETEEEEEEEEEECCBTTTTBCCEEEEEEEETTSCEEEEEESEEEECSCEEECGGGTBCGG
T ss_pred             CHHHHHHHHHHHHhCCCEEEECCeEEEEEeccccccccCCCceEEEEEEeCCCcEEeccCCEEEEEeCCccccCccCchh
Confidence            9999999999999999999999988888542     12   322 233346776655  99999999999999864   3


Q ss_pred             ccccc-CCCcEEeCCCCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEE
Q 013952          269 GQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFY  347 (433)
Q Consensus       269 ~~~~~-~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~  347 (433)
                      .++.. ++|+|.||+++||+.|+|||+|||+....         ..+..|..||+.+|.||.+....  ...|..+|+++
T Consensus       405 ~gl~~~~~G~i~vd~~~~ts~~~VyA~GD~~~~~~---------~~~~~A~~~g~~aa~~i~~~~~~--~~~~~~~p~~~  473 (598)
T 2x8g_A          405 VGVKLDKNGRVVCTDDEQTTVSNVYAIGDINAGKP---------QLTPVAIQAGRYLARRLFAGATE--LTDYSNVATTV  473 (598)
T ss_dssp             GCCCBCTTSCBCCCTTSBCSSTTEEECGGGBTTSC---------CCHHHHHHHHHHHHHHHHHCCCC--CCCCTTCCEEE
T ss_pred             cCceECCCCcEEeCCCCcCCCCCEEEEeeecCCCC---------ccHHHHHHhHHHHHHHHhcCCCc--ccCCCCCcEEE
Confidence            35666 56889999999999999999999964321         56788999999999999975322  25677888877


Q ss_pred             EeecccceEEecCCCCc--------EEEEcCCCcc---------ccCCcEEEEEEe---CCEEEEEEEecCChHHH-HHH
Q 013952          348 SRAFDLSWQFYGDNVGD--------TVLFGDNDLA---------SATHKFGTYWIK---DGKVVGVFLESGTPEEN-KAI  406 (433)
Q Consensus       348 ~~~~~~~~~~~g~~~~~--------~~~~~~~~~~---------~~~~~~~~~~~~---~~~l~G~~~~g~~~~~~-~~~  406 (433)
                      +..++++.+  |+++.+        .+.....+..         ....+|.|++++   +|+|+|+|++|+.++++ +.+
T Consensus       474 ~~~~~~a~v--Gl~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~~ilG~~~~g~~a~~~i~~~  551 (598)
T 2x8g_A          474 FTPLEYGAC--GLSEEDAIEKYGDKDIEVYHSNFKPLEWTVAHREDNVCYMKLVCRKSDNMRVLGLHVLGPNAGEITQGY  551 (598)
T ss_dssp             CSSSCEEEE--ECCHHHHHHHHCGGGEEEEEEEECCTHHHHTTCCSSCEEEEEEEETTTTTEEEEEEEESTTHHHHHHHH
T ss_pred             ECCCceEEE--eCCHHHHHhhCCCCcEEEEEEeccchhHHhhcCCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHH
Confidence            766666554  655311        1222111100         124678888873   79999999999998885 999


Q ss_pred             HHHHHcCCCCCChhhhcccCCCccc
Q 013952          407 AKVARVQPSVESLDVLKNEGLSFAS  431 (433)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~  431 (433)
                      +.||++++|++||..+.-+-+++++
T Consensus       552 ~~ai~~~~t~~~l~~~~~~hPt~~e  576 (598)
T 2x8g_A          552 AVAIKMGATKADFDRTIGIHPTCSE  576 (598)
T ss_dssp             HHHHHTTCBHHHHHHSCCCSSCSGG
T ss_pred             HHHHHcCCCHHHHhhccccCCCHHH
Confidence            9999999999988876555555543

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=100.00  E-value=9e-41  Score=310.43  Aligned_cols=295  Identities=22%  Similarity=0.262  Sum_probs=213.0

Q ss_pred             CCCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhH
Q 013952            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEW   80 (433)
Q Consensus         1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (433)
                      |+...|||+||||||||++||.+|+++|++   |+|||+..       +.+.++.....+++|++....+.+........
T Consensus         2 Mte~~yDvvIIG~GpAGl~aA~~l~~~g~~---V~liE~~~-------~gG~~~~~~~i~~~p~~~~~~~~~~~~~~~~~   71 (312)
T 4gcm_A            2 MTEIDFDIAIIGAGPAGMTAAVYASRANLK---TVMIERGI-------PGGQMANTEEVENFPGFEMITGPDLSTKMFEH   71 (312)
T ss_dssp             --CCSEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSC-------TTGGGGGCSCBCCSTTCSSBCHHHHHHHHHHH
T ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCC---EEEEecCC-------CCCeeecccccCCcCCccccchHHHHHHHHHH
Confidence            554579999999999999999999999987   99999871       12222322233344443322111112223444


Q ss_pred             HHhCCcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCCCCCCC---CCCEEEecCHHHHHHHHHHH
Q 013952           81 YKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGAD---AKNIFYLREIDDADKLVEAI  157 (433)
Q Consensus        81 ~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~---~~~v~~~~~~~~~~~~~~~~  157 (433)
                      ..+.+..+..+..+...+.....+...++++++||++|||||++|+.|+   +||.+   ...++++... +.       
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~liiAtGs~~~~~~---ipG~~~~~~~~v~~~~~~-~~-------  140 (312)
T 4gcm_A           72 AKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKKIG---VPGEQELGGRGVSYCAVC-DG-------  140 (312)
T ss_dssp             HHHTTCEEEECCCCEEEECSSCEEEECSSCEEEEEEEEECCCEEECCCC---CTTTTTTBTTTEESCHHH-HG-------
T ss_pred             HhhccccccceeeeeeeeeecceeeccCCeEEEeceeEEcccCccCcCC---CCChhhhCCccEEeeecc-Cc-------
Confidence            5567778877777777777777777788889999999999999999887   45543   2344432211 11       


Q ss_pred             HhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCc
Q 013952          158 KAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGE  237 (433)
Q Consensus       158 ~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~  237 (433)
                      ...++++++|||+|++|+|+|..|.+.|.+|+++++.+++++.   ..   ...+.+++.++.......+..+... +..
T Consensus       141 ~~~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  213 (312)
T 4gcm_A          141 AFFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQ---RI---LQDRAFKNDKIDFIWSHTLKSINEK-DGK  213 (312)
T ss_dssp             GGGTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCSC---HH---HHHHHHHCTTEEEECSEEEEEEEEE-TTE
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEecccccCcc---hh---HHHHHHHhcCcceeeecceeeeecc-ccc
Confidence            1126899999999999999999999999999999999887763   11   2235567888998888777776652 221


Q ss_pred             EEE---EEe--CCCcEEECCEEEEcccCccChhhhhc-ccccCCCcEEeCCCCCCCCCCeEEcCccccccccccCccccc
Q 013952          238 VKE---VKL--KDGRTLEADIVVVGVGGRPLISLFKG-QVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRV  311 (433)
Q Consensus       238 ~~~---v~~--~~g~~i~~d~vi~a~G~~p~~~~~~~-~~~~~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~  311 (433)
                      ...   ...  .++..+++|.|++++|.+|+..++.. ++..++|+|.||++||||+|+|||+|||++.+.         
T Consensus       214 ~~~~~~~~~~~~~~~~~~~d~v~~~~g~~~~~~~~~~~g~~~~~G~I~vd~~~~Ts~pgIyA~GDv~~~~~---------  284 (312)
T 4gcm_A          214 VGSVTLTSTKDGSEETHEADGVFIYIGMKPLTAPFKDLGITNDVGYIVTKDDMTTSVPGIFAAGDVRDKGL---------  284 (312)
T ss_dssp             EEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGGGGTCBCTTSCBCCCTTSBCSSTTEEECSTTBSCSC---------
T ss_pred             cccceeeeecCCceeEEeeeeEEeecCCCcCchhHHhcceecCCCeEeeCCCCccCCCCEEEEeecCCCcc---------
Confidence            111   111  23357999999999999999988755 455578899999999999999999999987432         


Q ss_pred             ccHHHHHHHHHHHHHHHhccC
Q 013952          312 EHVDHARKSAEQAVKTIMATE  332 (433)
Q Consensus       312 ~~~~~A~~~g~~aa~~i~~~~  332 (433)
                      .++..|..||+.||.||...+
T Consensus       285 ~~~~~A~~~G~~AA~~i~~~L  305 (312)
T 4gcm_A          285 RQIVTATGDGSIAAQSAAEYI  305 (312)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHH
Confidence            567889999999999997643

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=100.00  E-value=5.1e-41  Score=329.51  Aligned_cols=297  Identities=20%  Similarity=0.261  Sum_probs=227.9

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHH--H
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWY--K   82 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~   82 (433)
                      +++|||||||+||+++|..|++.+++   |+|||++...+.+|.+....     ...+....      ....+....  .
T Consensus        42 KprVVIIGgG~AGl~~A~~L~~~~~~---VtLId~~~~~~~~PlL~~va-----~G~l~~~~------i~~p~~~~~~~~  107 (502)
T 4g6h_A           42 KPNVLILGSGWGAISFLKHIDTKKYN---VSIISPRSYFLFTPLLPSAP-----VGTVDEKS------IIEPIVNFALKK  107 (502)
T ss_dssp             SCEEEEECSSHHHHHHHHHSCTTTCE---EEEEESSSEEECGGGGGGTT-----TTSSCGGG------GEEEHHHHHTTC
T ss_pred             CCCEEEECCcHHHHHHHHHhhhCCCc---EEEECCCCCcccccchhHHh-----hccccHHH------hhhhHHHHHHhh
Confidence            46899999999999999999887665   99999993333334332110     00010000      001112222  2


Q ss_pred             hCCcEEEeCceEEEEECCCCEEEeC--------------------CCcEEecceEEEccCCCccccCCCCCCCCCCCCEE
Q 013952           83 EKGIELILSTEIVRADIASKTLLSA--------------------TGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIF  142 (433)
Q Consensus        83 ~~~v~~~~~~~v~~i~~~~~~v~~~--------------------~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~  142 (433)
                      +.+++++.+ +|+.||++.++|.+.                    ++.++.||+||||||+.|..++   +||.. ++.+
T Consensus       108 ~~~v~~~~~-~v~~ID~~~k~V~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs~~~~~~---ipG~~-e~a~  182 (502)
T 4g6h_A          108 KGNVTYYEA-EATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNTFG---IPGVT-DYGH  182 (502)
T ss_dssp             SSCEEEEEE-EEEEEEGGGTEEEEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCCEECCTT---CTTHH-HHCE
T ss_pred             cCCeEEEEE-EEEEEEhhhCEEEEeecccceeecccccccccccCCceEEeCCEEEEcCCcccccCC---ccCcc-cccC
Confidence            357899886 899999999988753                    3568999999999999988776   67754 4567


Q ss_pred             EecCHHHHHHHHHHHHhc---------------CCCcEEEECCCHHHHHHHHHHHhC--------------CCeEEEEcc
Q 013952          143 YLREIDDADKLVEAIKAK---------------KNGKAVVVGGGYIGLELSAALKIN--------------NIDVSMVYP  193 (433)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~---------------~~~~v~ViG~G~~g~e~a~~l~~~--------------g~~V~li~~  193 (433)
                      .++++.++..+++.+...               ...+++|||+|++|+|+|..|.+.              ..+|++++.
T Consensus       183 ~l~t~~dA~~ir~~l~~~~e~a~~~~~~~~~~~~~~~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~  262 (502)
T 4g6h_A          183 FLKEIPNSLEIRRTFAANLEKANLLPKGDPERRRLLSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEA  262 (502)
T ss_dssp             ECSSHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECS
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcccccchhhccccceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEecc
Confidence            889999998887665321               124799999999999999988754              368999999


Q ss_pred             CCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCc----EEECCEEEEcccCccChhhh--
Q 013952          194 EPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGR----TLEADIVVVGVGGRPLISLF--  267 (433)
Q Consensus       194 ~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~----~i~~d~vi~a~G~~p~~~~~--  267 (433)
                      .+++++. +++++.+.+++.|++.||++++++.|++++.  ++........+|+    ++++|.+|||+|.+|+....  
T Consensus       263 ~~~il~~-~~~~~~~~~~~~L~~~GV~v~~~~~v~~v~~--~~~~~~~~~~dg~~~~~~i~ad~viwa~Gv~~~~~~~~l  339 (502)
T 4g6h_A          263 LPIVLNM-FEKKLSSYAQSHLENTSIKVHLRTAVAKVEE--KQLLAKTKHEDGKITEETIPYGTLIWATGNKARPVITDL  339 (502)
T ss_dssp             SSSSSTT-SCHHHHHHHHHHHHHTTCEEETTEEEEEECS--SEEEEEEECTTSCEEEEEEECSEEEECCCEECCHHHHHH
T ss_pred             ccccccC-CCHHHHHHHHHHHHhcceeeecCceEEEEeC--CceEEEEEecCcccceeeeccCEEEEccCCcCCHHHHhH
Confidence            9999986 8999999999999999999999999999965  5555556666763    69999999999999985322  


Q ss_pred             --hccccc-CCCcEEeCCCCCC-CCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhcc
Q 013952          268 --KGQVAE-NKGGIETDDFFKT-SADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMAT  331 (433)
Q Consensus       268 --~~~~~~-~~g~i~vd~~~~t-~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~  331 (433)
                        ..+... .+|+|.||++||+ ++|||||+|||+..+.+        +++..|.+||+++|+||.+.
T Consensus       340 ~~~~~~~~~~~g~I~Vd~~lq~~~~~~IfAiGD~a~~~~p--------~~a~~A~qqg~~~A~ni~~~  399 (502)
T 4g6h_A          340 FKKIPEQNSSKRGLAVNDFLQVKGSNNIFAIGDNAFAGLP--------PTAQVAHQEAEYLAKNFDKM  399 (502)
T ss_dssp             HHHSGGGTTCCSSEEBCTTSBBTTCSSEEECGGGEESSSC--------CCHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccccccCCCceeECCccccCCCCCEEEEEcccCCCCC--------CchHHHHHHHHHHHHHHHHH
Confidence              223333 5689999999999 89999999999987765        78899999999999999653

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=100.00  E-value=8.4e-40  Score=307.08  Aligned_cols=301  Identities=17%  Similarity=0.209  Sum_probs=222.4

Q ss_pred             CCCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccc--CCC-CCCCCCCcccccCCCCCCCC
Q 013952            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYL--FPE-GTARLPGFHVCVGSGGERLL   77 (433)
Q Consensus         1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~   77 (433)
                      ||++++||+|||||++|+++|.+|++.|++   |+|+|++....      +.+.  .+. .....+.++..........+
T Consensus         1 m~~~~~~vvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~~g------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   71 (335)
T 2zbw_A            1 MAADHTDVLIVGAGPTGLFAGFYVGMRGLS---FRFVDPLPEPG------GQLTALYPEKYIYDVAGFPKVYAKDLVKGL   71 (335)
T ss_dssp             --CCEEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSSSSC------HHHHHTCTTSEECCSTTCSSEEHHHHHHHH
T ss_pred             CCCCcCcEEEECCCHHHHHHHHHHHhCCCC---EEEEeCCCCCC------CeeeccCCCceeeccCCCCCCCHHHHHHHH
Confidence            777789999999999999999999999887   99999982111      1110  000 00111111110000111223


Q ss_pred             HhHHHhCCcEEEeCceEEEEECCCC--EEEeCCCcEEecceEEEccCCC---ccccCCCCCCCCC---CCCEEE-ecCHH
Q 013952           78 PEWYKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGST---VLRLTDFGVEGAD---AKNIFY-LREID  148 (433)
Q Consensus        78 ~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~---~~~~~~~~~~g~~---~~~v~~-~~~~~  148 (433)
                      .+.+.+.+++++.++.|..++.+..  .|.+.++.++.||+||+|||+.   |..|+   ++|.+   ...+++ +.+..
T Consensus        72 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~p~~~~---i~g~~~~~~~~~~~~~~~~~  148 (335)
T 2zbw_A           72 VEQVAPFNPVYSLGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGVGAFEPRRIG---APGEREFEGRGVYYAVKSKA  148 (335)
T ss_dssp             HHHHGGGCCEEEESCCEEEEEEETTEEEEEETTSCEEEEEEEEECCTTSEEEECCCC---CTTTTTTBTTTEESSCSCGG
T ss_pred             HHHHHHcCCEEEeCCEEEEEEECCCEEEEEECCCCEEEeCEEEECCCCCCCCCCCCC---CCChhhccCcEEEEecCchh
Confidence            3445567899988889999887653  4666677789999999999995   54444   45543   223432 22221


Q ss_pred             HHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEE
Q 013952          149 DADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAV  228 (433)
Q Consensus       149 ~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~  228 (433)
                                ...+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+.+   .++..+.+.+.+++.||++++++.+.
T Consensus       149 ----------~~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~~---~~~~~~~l~~~l~~~gv~v~~~~~v~  215 (335)
T 2zbw_A          149 ----------EFQGKRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQFRA---HEASVKELMKAHEEGRLEVLTPYELR  215 (335)
T ss_dssp             ----------GGTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCCS---CHHHHHHHHHHHHTTSSEEETTEEEE
T ss_pred             ----------hcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCccCc---cHHHHHHHHhccccCCeEEecCCcce
Confidence                      12578999999999999999999999999999999887765   46778888999999999999999999


Q ss_pred             EEEecCCCcEEEEEeC---CC--cEEECCEEEEcccCccChhhhhc-ccccCCCcEEeCCCCCCCCCCeEEcCccccccc
Q 013952          229 GFTTNADGEVKEVKLK---DG--RTLEADIVVVGVGGRPLISLFKG-QVAENKGGIETDDFFKTSADDVYAVGDVATFPM  302 (433)
Q Consensus       229 ~i~~~~~g~~~~v~~~---~g--~~i~~d~vi~a~G~~p~~~~~~~-~~~~~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~  302 (433)
                      ++..  ++.+..+.+.   +|  +++++|.||+|+|++|+.+++.. ++..++|++.||+++||+.|+|||+|||+..+.
T Consensus       216 ~i~~--~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~  293 (335)
T 2zbw_A          216 RVEG--DERVRWAVVFHNQTQEELALEVDAVLILAGYITKLGPLANWGLALEKNKIKVDTTMATSIPGVYACGDIVTYPG  293 (335)
T ss_dssp             EEEE--SSSEEEEEEEETTTCCEEEEECSEEEECCCEEEECGGGGGSCCCEETTEEECCTTCBCSSTTEEECSTTEECTT
T ss_pred             eEcc--CCCeeEEEEEECCCCceEEEecCEEEEeecCCCCchHhhhcceeccCCeeeeCCCCCCCCCCEEEeccccccCc
Confidence            9987  4555566665   66  57999999999999999877754 555567899999999999999999999998653


Q ss_pred             cccCcccccccHHHHHHHHHHHHHHHhccCCCC
Q 013952          303 KLYREMRRVEHVDHARKSAEQAVKTIMATEGGK  335 (433)
Q Consensus       303 ~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~  335 (433)
                      .       ..++..|..||+.+|.||.+...+.
T Consensus       294 ~-------~~~~~~A~~~g~~aa~~i~~~l~~~  319 (335)
T 2zbw_A          294 K-------LPLIVLGFGEAAIAANHAAAYANPA  319 (335)
T ss_dssp             C-------CCCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             c-------hhhhhhhHHHHHHHHHHHHHHhhhh
Confidence            1       1678889999999999998876543

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=100.00  E-value=4.5e-40  Score=306.08  Aligned_cols=297  Identities=21%  Similarity=0.216  Sum_probs=209.3

Q ss_pred             CCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-C--CCCCCCCccccccCCCCCCCCCCccccc-CCCCCCCC
Q 013952            2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-V--APYERPALSKAYLFPEGTARLPGFHVCV-GSGGERLL   77 (433)
Q Consensus         2 m~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   77 (433)
                      |++.|||+||||||||++||.+|+++|++   |+|+|+. .  .....+..++..     .+++++++... +.+.....
T Consensus         1 M~~~yDvvIIG~GpAGl~AA~~la~~g~~---v~liE~~~~gg~~~~G~~~~~~~-----i~~~~g~~~~i~~~~l~~~~   72 (314)
T 4a5l_A            1 MSNIHDVVIIGSGPAAHTAAIYLGRSSLK---PVMYEGFMAGGVAAGGQLTTTTI-----IENFPGFPNGIDGNELMMNM   72 (314)
T ss_dssp             -CCCEEEEEECCSHHHHHHHHHHHHTTCC---CEEECCSSGGGCCTTCGGGGSSE-----ECCSTTCTTCEEHHHHHHHH
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCC---EEEEecCCCCCcccCCCcCChHH-----hhhccCCcccCCHHHHHHHH
Confidence            55679999999999999999999999988   9999998 2  111111111111     12333332211 01112233


Q ss_pred             HhHHHhCCcEEEeCceEEEEECCCC--EEEeCCCcEEecceEEEccCCCccccCCCCCCCCCC---CCEEEecCHHHHHH
Q 013952           78 PEWYKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADA---KNIFYLREIDDADK  152 (433)
Q Consensus        78 ~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~---~~v~~~~~~~~~~~  152 (433)
                      ...+++.++.+... .+..+....+  .+.+.++.++.||+||||||+.|+.|+   +||.+.   ..+...   .....
T Consensus        73 ~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~liiATG~~~~~~~---ipG~~~~~~~~~~~~---~~~~~  145 (314)
T 4a5l_A           73 RTQSEKYGTTIITE-TIDHVDFSTQPFKLFTEEGKEVLTKSVIIATGATAKRMH---VPGEDKYWQNGVSAC---AICDG  145 (314)
T ss_dssp             HHHHHHTTCEEECC-CEEEEECSSSSEEEEETTCCEEEEEEEEECCCEEECCCC---CTTHHHHBTTTEESC---HHHHT
T ss_pred             HHHHhhcCcEEEEe-EEEEeecCCCceEEEECCCeEEEEeEEEEcccccccccC---CCccccccccceeee---hhhhh
Confidence            45566788888775 5555554433  566778889999999999999998887   565432   222221   11111


Q ss_pred             HHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013952          153 LVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTT  232 (433)
Q Consensus       153 ~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~  232 (433)
                         .....++++++|||+|++|+|+|..|.+.|.+|+++++.+....   ....   ..+.....+++.+....+.++..
T Consensus       146 ---~~~~~~~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~i~~  216 (314)
T 4a5l_A          146 ---AVPIFRNKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDAFRA---SKTM---QERVLNHPKIEVIWNSELVELEG  216 (314)
T ss_dssp             ---TSGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS---CHHH---HHHHHTCTTEEEECSEEEEEEEE
T ss_pred             ---hhhhcCCCeEEEECCChHHHHHHHHHHHhCCeeeeecccccccc---cchh---hhhhhcccceeeEeeeeeEEEEe
Confidence               11112578999999999999999999999999999998766543   3332   34455677899999998888876


Q ss_pred             cCCCcEEEEEe-----CCCcEEECCEEEEcccCccChhhhhcccccCCCcEEeCCCCCCCCCCeEEcCccccccccccCc
Q 013952          233 NADGEVKEVKL-----KDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYRE  307 (433)
Q Consensus       233 ~~~g~~~~v~~-----~~g~~i~~d~vi~a~G~~p~~~~~~~~~~~~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~  307 (433)
                       .+.....+..     .+++++++|.+++++|++||++++...+..+++++.||+++|||+|+|||+|||+..+.     
T Consensus       217 -~~~~~~~~~~~~~~~~~~~~i~~d~vi~a~G~~pn~~~l~~~~~~~~~G~iv~~~~~Ts~pgIyA~GDv~~~~~-----  290 (314)
T 4a5l_A          217 -DGDLLNGAKIHNLVSGEYKVVPVAGLFYAIGHSPNSKFLGGQVKTADDGYILTEGPKTSVDGVFACGDVCDRVY-----  290 (314)
T ss_dssp             -SSSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTSSCBCTTSCBCCBTTBCSSTTEEECSTTTCSSC-----
T ss_pred             -eeeccceeEEeecccccceeeccccceEecccccChhHhcccceEcCCeeEeCCCCccCCCCEEEEEeccCCcc-----
Confidence             2333333333     34568999999999999999999987776655556699999999999999999998754     


Q ss_pred             ccccccHHHHHHHHHHHHHHHhccC
Q 013952          308 MRRVEHVDHARKSAEQAVKTIMATE  332 (433)
Q Consensus       308 ~~~~~~~~~A~~~g~~aa~~i~~~~  332 (433)
                          +++..|..+|+.||.++...+
T Consensus       291 ----~~~~~A~~~G~~AA~~~~~yL  311 (314)
T 4a5l_A          291 ----RQAIVAAGSGCMAALSCEKWL  311 (314)
T ss_dssp             ----CCHHHHHHHHHHHHHHHHHHH
T ss_pred             ----hHHHHHHHHHHHHHHHHHHHH
Confidence                467778899999999987543

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=100.00  E-value=1.4e-39  Score=303.57  Aligned_cols=299  Identities=20%  Similarity=0.203  Sum_probs=223.7

Q ss_pred             CCCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCccccc-CCCCCCCCHh
Q 013952            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCV-GSGGERLLPE   79 (433)
Q Consensus         1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~   79 (433)
                      |||..+||+|||||++|+++|.+|++.|++   |+|+|+..       ..+.+.........+++.... .......+..
T Consensus         1 ~~~~~~~vvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~-------~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   70 (320)
T 1trb_A            1 GTTKHSKLLILGSGPAGYTAAVYAARANLQ---PVLITGME-------KGGQLTTTTEVENWPGDPNDLTGPLLMERMHE   70 (320)
T ss_dssp             CCEEEEEEEEECCSHHHHHHHHHHHTTTCC---CEEECCSS-------TTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHH
T ss_pred             CCCCcCCEEEECcCHHHHHHHHHHHHCCCc---EEEEccCC-------CCceEecchhhhhCCCCCCCCCHHHHHHHHHH
Confidence            455679999999999999999999999987   99999761       111111111111222221100 0011122345


Q ss_pred             HHHhCCcEEEeCceEEEEECCCCEEE-eCCCcEEecceEEEccCCCccccCCCCCCCCC---CCCEEEecCHHHHHHHHH
Q 013952           80 WYKEKGIELILSTEIVRADIASKTLL-SATGLIFKYQILVIATGSTVLRLTDFGVEGAD---AKNIFYLREIDDADKLVE  155 (433)
Q Consensus        80 ~~~~~~v~~~~~~~v~~i~~~~~~v~-~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~---~~~v~~~~~~~~~~~~~~  155 (433)
                      .+.+.+++++.+ .+..++.+.+.+. +.++.++.||+||+|||+.|..|+   +++.+   ...++++......     
T Consensus        71 ~~~~~~~~~~~~-~v~~i~~~~~~~~v~~~~~~~~~~~lv~AtG~~~~~~~---~~g~~~~~~~~~~~~~~~~~~-----  141 (320)
T 1trb_A           71 HATKFETEIIFD-HINKVDLQNRPFRLNGDNGEYTCDALIIATGASARYLG---LPSEEAFKGRGVSACATSDGF-----  141 (320)
T ss_dssp             HHHHTTCEEECC-CEEEEECSSSSEEEEESSCEEEEEEEEECCCEEECCCC---CHHHHHTBTTTEESCHHHHGG-----
T ss_pred             HHHHCCCEEEEe-eeeEEEecCCEEEEEeCCCEEEcCEEEECCCCCcCCCC---CCChHHhCCceeEecccCCcc-----
Confidence            566789999998 4889987766444 567778999999999999887776   45432   2344433222211     


Q ss_pred             HHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCC
Q 013952          156 AIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD  235 (433)
Q Consensus       156 ~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~  235 (433)
                       +  ..+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+.   .++.+.+.+.+.+++.||++++++++.++.. ++
T Consensus       142 -~--~~~~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~---~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~-~~  214 (320)
T 1trb_A          142 -F--YRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR---AEKILIKRLMDKVENGNIILHTNRTLEEVTG-DQ  214 (320)
T ss_dssp             -G--GTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCC---CCHHHHHHHHHHHHTSSEEEECSCEEEEEEE-CS
T ss_pred             -c--cCCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCccc---cCHHHHHHHHHhcccCCeEEEcCceeEEEEc-CC
Confidence             1  257899999999999999999999999999999987764   3788888889999999999999999999987 34


Q ss_pred             CcEEEEEeCC----C--cEEECCEEEEcccCccChhhhhcccccCCCcEEeCCCC-----CCCCCCeEEcCccccccccc
Q 013952          236 GEVKEVKLKD----G--RTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFF-----KTSADDVYAVGDVATFPMKL  304 (433)
Q Consensus       236 g~~~~v~~~~----g--~~i~~d~vi~a~G~~p~~~~~~~~~~~~~g~i~vd~~~-----~t~~~~vfa~Gd~~~~~~~~  304 (433)
                      +++..|.+.+    |  +++++|.||+|+|++|+..+++.++..++|++.||+++     +|+.|+|||+|||+..+.  
T Consensus       215 ~~v~~v~~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~~~~~l~~~~G~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~--  292 (320)
T 1trb_A          215 MGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIY--  292 (320)
T ss_dssp             SSEEEEEEECCTTCCCCEEEECSEEEECSCEEESCGGGTTTSCEETTEECCCCSSSSCTTBCSSTTEEECGGGGCSSS--
T ss_pred             CceEEEEEEeccCCCceEEEEcCEEEEEeCCCCChHHhcccccccCceEEECCCcccccccCCCCCEEEcccccCCcc--
Confidence            4666676654    4  57999999999999999998875565567899999997     899999999999998652  


Q ss_pred             cCcccccccHHHHHHHHHHHHHHHhccCCC
Q 013952          305 YREMRRVEHVDHARKSAEQAVKTIMATEGG  334 (433)
Q Consensus       305 ~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~  334 (433)
                             ..+..|..+|+.||.+|...+.+
T Consensus       293 -------~~~~~A~~~g~~aa~~i~~~l~~  315 (320)
T 1trb_A          293 -------RQAITSAGTGCMAALDAERYLDG  315 (320)
T ss_dssp             -------CCHHHHHHHHHHHHHHHHHHHTC
T ss_pred             -------hhhhhhhccHHHHHHHHHHHHHh
Confidence                   56788999999999999876544

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=100.00  E-value=1.8e-38  Score=300.99  Aligned_cols=302  Identities=21%  Similarity=0.300  Sum_probs=220.7

Q ss_pred             CCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccc--CCC-CCCCCCCcccccCCCCCCCCHh
Q 013952            3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYL--FPE-GTARLPGFHVCVGSGGERLLPE   79 (433)
Q Consensus         3 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~   79 (433)
                      +.++||+|||||++|+++|.+|++.|++   |+|||+...+      .+.+.  .+. .....+++...........+.+
T Consensus        12 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~~------gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   82 (360)
T 3ab1_A           12 HDMRDLTIIGGGPTGIFAAFQCGMNNIS---CRIIESMPQL------GGQLAALYPEKHIYDVAGFPEVPAIDLVESLWA   82 (360)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSS------CHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHH
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCC---EEEEecCCCC------CCcccccCCCcccccCCCCCCCCHHHHHHHHHH
Confidence            3468999999999999999999999987   9999998211      11110  000 0011121110000011122334


Q ss_pred             HHHhCCcEEEeCceEEEEECCCC---EEEeCCCcEEecceEEEccCCCccccCCCCCCC-CC---CCCEEE-ecCHHHHH
Q 013952           80 WYKEKGIELILSTEIVRADIASK---TLLSATGLIFKYQILVIATGSTVLRLTDFGVEG-AD---AKNIFY-LREIDDAD  151 (433)
Q Consensus        80 ~~~~~~v~~~~~~~v~~i~~~~~---~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g-~~---~~~v~~-~~~~~~~~  151 (433)
                      .+.+.+++++.++.|..++...+   .|.+.+++++.||+||+|||+.+..|..++++| .+   ...+++ +++..   
T Consensus        83 ~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~li~AtG~~~~~~~~~~i~g~~~~~~~~~v~~~~~~~~---  159 (360)
T 3ab1_A           83 QAERYNPDVVLNETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGSSVYYAVKSVE---  159 (360)
T ss_dssp             HHHTTCCEEECSCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCTTCSCCBCCCGGGCCCTTTBTTTEESSCSCGG---
T ss_pred             HHHHhCCEEEcCCEEEEEEECCCceEEEEECCCcEEEeeEEEEccCCCcCCCCCCCCCCchhhCcCceEEEecCCHH---
Confidence            55667899999889999987654   577778888999999999999433332222455 32   223432 22221   


Q ss_pred             HHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEE
Q 013952          152 KLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFT  231 (433)
Q Consensus       152 ~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~  231 (433)
                             ...+++++|||+|.+|+|+|..|.+.+.+|+++++.+.+.+   .++..+.+.+.+++.||+++++++|.++.
T Consensus       160 -------~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~---~~~~~~~l~~~~~~~gv~i~~~~~v~~i~  229 (360)
T 3ab1_A          160 -------DFKGKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQG---HGKTAHEVERARANGTIDVYLETEVASIE  229 (360)
T ss_dssp             -------GGTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCSS---CSHHHHSSHHHHHHTSEEEESSEEEEEEE
T ss_pred             -------HcCCCcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCCC---CHHHHHHHHHHhhcCceEEEcCcCHHHhc
Confidence                   12578999999999999999999999999999999887765   24667778888899999999999999998


Q ss_pred             ecCCCcEEEEEeC--CC--cEEECCEEEEcccCccChhhhhc-ccccCCCcEEeCCCCCCCCCCeEEcCccccccccccC
Q 013952          232 TNADGEVKEVKLK--DG--RTLEADIVVVGVGGRPLISLFKG-QVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYR  306 (433)
Q Consensus       232 ~~~~g~~~~v~~~--~g--~~i~~d~vi~a~G~~p~~~~~~~-~~~~~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~  306 (433)
                      . +++++..|.+.  +|  +++++|.||+|+|++|+.+++.. ++..++|+|.||+++||+.|+|||+|||+..+..   
T Consensus       230 ~-~~~~v~~v~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~---  305 (360)
T 3ab1_A          230 E-SNGVLTRVHLRSSDGSKWTVEADRLLILIGFKSNLGPLARWDLELYENALVVDSHMKTSVDGLYAAGDIAYYPGK---  305 (360)
T ss_dssp             E-ETTEEEEEEEEETTCCEEEEECSEEEECCCBCCSCGGGGGSSCCEETTEEECCTTSBCSSTTEEECSTTEECTTC---
T ss_pred             c-CCCceEEEEEEecCCCeEEEeCCEEEECCCCCCCHHHHHhhccccccCeeeecCCCcCCCCCEEEecCccCCCCc---
Confidence            7 34555566664  66  57999999999999999887754 4555678999999999999999999999986531   


Q ss_pred             cccccccHHHHHHHHHHHHHHHhccCCC
Q 013952          307 EMRRVEHVDHARKSAEQAVKTIMATEGG  334 (433)
Q Consensus       307 ~~~~~~~~~~A~~~g~~aa~~i~~~~~~  334 (433)
                          .+++..|..||+.+|.+|.+...+
T Consensus       306 ----~~~~~~A~~~g~~aa~~i~~~l~~  329 (360)
T 3ab1_A          306 ----LKIIQTGLSEATMAVRHSLSYIKP  329 (360)
T ss_dssp             ----CCSHHHHHHHHHHHHHHHHHHHSC
T ss_pred             ----cceeehhHHHHHHHHHHHHhhcCC
Confidence                167888999999999999876644

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=100.00  E-value=1.7e-38  Score=294.93  Aligned_cols=291  Identities=20%  Similarity=0.236  Sum_probs=212.5

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHh
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   83 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (433)
                      ++||+|||||++|+++|..|++.|++   |+|+|+. ...+         ........++.............+.+.+++
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~---v~li~~~~gG~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   68 (310)
T 1fl2_A            1 AYDVLIVGSGPAGAAAAIYSARKGIR---TGLMGERFGGQI---------LDTVDIENYISVPKTEGQKLAGALKVHVDE   68 (310)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCC---EEEECSSTTGGG---------GGCCEECCBTTBSSEEHHHHHHHHHHHHHT
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCc---EEEEeCCCCcee---------ccccccccccCcCCCCHHHHHHHHHHHHHH
Confidence            37999999999999999999999987   9999876 1111         100000111111000000111234455667


Q ss_pred             CCcEEEeCceEEEEECC-----CCEEEeCCCcEEecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHH
Q 013952           84 KGIELILSTEIVRADIA-----SKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIK  158 (433)
Q Consensus        84 ~~v~~~~~~~v~~i~~~-----~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~  158 (433)
                      .+++++.++++..++++     ...|.+.+++++.||++|+|||+.|..|+.++........++.+...      ..  .
T Consensus        69 ~~v~~~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~~~~~g~~~~~~~~~~~~~~~------~~--~  140 (310)
T 1fl2_A           69 YDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKWRNMNVPGEDQYRTKGVTYCPHC------DG--P  140 (310)
T ss_dssp             SCEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEECCCCCTTTTTTBTTTEESCHHH------HG--G
T ss_pred             cCCeEEccCEEEEEEecccCCceEEEEECCCCEEEeCEEEECcCCCcCCCCCCChhhcccceeEEeccC------cH--h
Confidence            89999999899999865     34677778888999999999999887776433222222344432211      11  1


Q ss_pred             hcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHh-cCcEEEcCCeEEEEEecCCCc
Q 013952          159 AKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGE  237 (433)
Q Consensus       159 ~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~-~GV~v~~~~~v~~i~~~~~g~  237 (433)
                      ...+++++|||+|++|+|+|..|.+.+.+|+++++.+.+.   +++.    +.+.+++ .||++++++++.++.. ++++
T Consensus       141 ~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~---~~~~----~~~~l~~~~gv~v~~~~~v~~i~~-~~~~  212 (310)
T 1fl2_A          141 LFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK---ADQV----LQDKLRSLKNVDIILNAQTTEVKG-DGSK  212 (310)
T ss_dssp             GGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCC---SCHH----HHHHHHTCTTEEEESSEEEEEEEE-SSSS
T ss_pred             hcCCCEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCcccC---ccHH----HHHHHhhCCCeEEecCCceEEEEc-CCCc
Confidence            1257899999999999999999999999999999988763   3433    4455666 6999999999999987 3456


Q ss_pred             EEEEEeCC---Cc--EEECCEEEEcccCccChhhhhccccc-CCCcEEeCCCCCCCCCCeEEcCccccccccccCccccc
Q 013952          238 VKEVKLKD---GR--TLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRV  311 (433)
Q Consensus       238 ~~~v~~~~---g~--~i~~d~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~  311 (433)
                      +..+.+.+   |+  ++++|.|++|+|++|+.+++...+.. ++|+|.||+++||+.|+|||+|||+..+.         
T Consensus       213 v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~l~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~---------  283 (310)
T 1fl2_A          213 VVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTNWLEGAVERNRMGEIIIDAKCETNVKGVFAAGDCTTVPY---------  283 (310)
T ss_dssp             EEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTTSCBCTTSCBCCCTTCBCSSTTEEECSTTBSCSS---------
T ss_pred             EEEEEEEECCCCcEEEEEcCEEEEeeCCccCchHHhccccccCCCcEEcCCCCccCCCCEEEeecccCCcc---------
Confidence            65666643   53  68999999999999999887655555 56899999999999999999999998753         


Q ss_pred             ccHHHHHHHHHHHHHHHhccC
Q 013952          312 EHVDHARKSAEQAVKTIMATE  332 (433)
Q Consensus       312 ~~~~~A~~~g~~aa~~i~~~~  332 (433)
                      +++..|..+|+.||.+|....
T Consensus       284 ~~~~~A~~~g~~aa~~i~~~l  304 (310)
T 1fl2_A          284 KQIIIATGEGAKASLSAFDYL  304 (310)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhHhhHHHHHHHHHHHH
Confidence            467889999999999998754

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=100.00  E-value=3e-38  Score=295.14  Aligned_cols=292  Identities=21%  Similarity=0.263  Sum_probs=213.6

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCccccc-CCCCCCCCHhHHH
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCV-GSGGERLLPEWYK   82 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~   82 (433)
                      .++||+|||||++|+++|.+|++.|++   |+|+|+. .+.      +.+.........+++.... .......+.+.++
T Consensus         7 ~~~dvvIIG~G~aGl~aA~~l~~~g~~---v~lie~~-~~g------g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   76 (325)
T 2q7v_A            7 HDYDVVIIGGGPAGLTAAIYTGRAQLS---TLILEKG-MPG------GQIAWSEEVENFPGFPEPIAGMELAQRMHQQAE   76 (325)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESS-CTT------GGGGGCSCBCCSTTCSSCBCHHHHHHHHHHHHH
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHcCCc---EEEEeCC-CCC------cccccccccccCCCCCCCCCHHHHHHHHHHHHH
Confidence            358999999999999999999999987   9999998 111      1111111111122221100 0011123345566


Q ss_pred             hCCcEEEeCceEEEEECC--C---CEEEeCCCcEEecceEEEccCCCccccCCCCCCCCCC---CCEEEecCHHHHHHHH
Q 013952           83 EKGIELILSTEIVRADIA--S---KTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADA---KNIFYLREIDDADKLV  154 (433)
Q Consensus        83 ~~~v~~~~~~~v~~i~~~--~---~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~---~~v~~~~~~~~~~~~~  154 (433)
                      +.+++++. ..+..++..  +   ..|.+.+++++.||+||+|||+.|..|+   +++.+.   ..++.+......    
T Consensus        77 ~~gv~~~~-~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~~~---i~g~~~~~~~~~~~~~~~~~~----  148 (325)
T 2q7v_A           77 KFGAKVEM-DEVQGVQHDATSHPYPFTVRGYNGEYRAKAVILATGADPRKLG---IPGEDNFWGKGVSTCATCDGF----  148 (325)
T ss_dssp             HTTCEEEE-CCEEEEEECTTSSSCCEEEEESSCEEEEEEEEECCCEEECCCC---CTTTTTTBTTTEESCHHHHGG----
T ss_pred             HcCCEEEe-eeEEEEEeccCCCceEEEEECCCCEEEeCEEEECcCCCcCCCC---CCChhhccCceEEEeccCCHH----
Confidence            78999988 489988876  4   3677778889999999999999988776   455432   344432221111    


Q ss_pred             HHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecC
Q 013952          155 EAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNA  234 (433)
Q Consensus       155 ~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~  234 (433)
                          ...+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+..   ++.+.+   +.+++.||++++++++.++..  
T Consensus       149 ----~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~---~~~~~~---~l~~~~gv~i~~~~~v~~i~~--  216 (325)
T 2q7v_A          149 ----FYKGKKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLRA---NKVAQA---RAFANPKMKFIWDTAVEEIQG--  216 (325)
T ss_dssp             ----GGTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCS---CHHHHH---HHHTCTTEEEECSEEEEEEEE--
T ss_pred             ----HcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcCCc---chHHHH---HHHhcCCceEecCCceEEEcc--
Confidence                12578999999999999999999999999999999876542   444322   333456999999999999987  


Q ss_pred             CCcEEEEEeC---CCc--EEECCEEEEcccCccChhhhhccccc-CCCcEEeCCCCCCCCCCeEEcCccccccccccCcc
Q 013952          235 DGEVKEVKLK---DGR--TLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREM  308 (433)
Q Consensus       235 ~g~~~~v~~~---~g~--~i~~d~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~  308 (433)
                      ++++..|.+.   +|+  ++++|.||+|+|++|+.+++...+.. ++|+|.||+++||+.|+|||+|||+..+.      
T Consensus       217 ~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~------  290 (325)
T 2q7v_A          217 ADSVSGVKLRNLKTGEVSELATDGVFIFIGHVPNTAFVKDTVSLRDDGYVDVRDEIYTNIPMLFAAGDVSDYIY------  290 (325)
T ss_dssp             SSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTTSCBCTTSCBCCBTTTBCSSTTEEECSTTTCSSC------
T ss_pred             CCcEEEEEEEECCCCcEEEEEcCEEEEccCCCCChHHHhhhcccCCCccEecCCCCccCCCCEEEeecccCccH------
Confidence            4555567664   564  79999999999999999887654554 57899999999999999999999998632      


Q ss_pred             cccccHHHHHHHHHHHHHHHhccCCC
Q 013952          309 RRVEHVDHARKSAEQAVKTIMATEGG  334 (433)
Q Consensus       309 ~~~~~~~~A~~~g~~aa~~i~~~~~~  334 (433)
                         +.+..|..||+.||.||.....+
T Consensus       291 ---~~~~~A~~~g~~aa~~i~~~l~~  313 (325)
T 2q7v_A          291 ---RQLATSVGAGTRAAMMTERQLAA  313 (325)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHH
Confidence               57888999999999999876543

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=100.00  E-value=6e-39  Score=308.59  Aligned_cols=320  Identities=20%  Similarity=0.193  Sum_probs=238.8

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      -++|||||||+||++||.+|++.+. ..+|+|||++...+..+.+.. +.....  ..         .......+.+.+.
T Consensus         2 GKkVvIIG~G~AG~~aA~~L~~~~~-~~~Vtlie~~~~~~~~p~~~~-v~~g~~--~~---------~~~~~~~~~~~~~   68 (401)
T 3vrd_B            2 GRKVVVVGGGTGGATAAKYIKLADP-SIEVTLIEPNETYYTCYMSNE-VIGGDR--EL---------ASLRVGYDGLRAH   68 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCT-TSEEEEECSCSSEECSTTHHH-HHHTSS--CG---------GGGEECSHHHHHT
T ss_pred             cCEEEEECCcHHHHHHHHHHHhcCc-CCeEEEEeCCCCCCCccCHHH-HhcCCC--CH---------HHHhhCHHHHHHC
Confidence            3689999999999999999999874 467999999833333333221 111100  00         0011234556678


Q ss_pred             CcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCCCCCC-CCCCEEEecCHHHHHHHHHHHHhcCCC
Q 013952           85 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGA-DAKNIFYLREIDDADKLVEAIKAKKNG  163 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~-~~~~v~~~~~~~~~~~~~~~~~~~~~~  163 (433)
                      +++++.+ +|..||++.+++.+.++.++.||+||+|||+++..++.++.... ....++.+.+.+++..+.+.+......
T Consensus        69 gv~~i~~-~v~~id~~~~~v~~~~g~~i~yd~LviAtG~~~~~~~i~G~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  147 (401)
T 3vrd_B           69 GIQVVHD-SALGIDPDKKLVKTAGGAEFAYDRCVVAPGIDLLYDKIEGYSEALAAKLPHAWKAGEQTALLRRQLESMDDG  147 (401)
T ss_dssp             TCEEECS-CEEEEETTTTEEEETTSCEEECSEEEECCCEEECGGGSBTCCSGGGGTSCCCSSCSHHHHHHHHHHHHSCTT
T ss_pred             CCEEEEe-EEEEEEccCcEEEecccceeecceeeeccCCccccCCccCchhhcccCccceeccHHHHHHHHHHHHhcccC
Confidence            9999986 89999999999999999999999999999999888774332211 123456677888888888888876555


Q ss_pred             cEEEECCCH-----------HHHHHHHHHHhCC--CeEEEEccCCccCCC-CCCHHHHHHHHHHHHhcCcEEEcCCeEEE
Q 013952          164 KAVVVGGGY-----------IGLELSAALKINN--IDVSMVYPEPWCMPR-LFTADIAAFYEGYYANKGIKIIKGTVAVG  229 (433)
Q Consensus       164 ~v~ViG~G~-----------~g~e~a~~l~~~g--~~V~li~~~~~~~~~-~~~~~~~~~l~~~l~~~GV~v~~~~~v~~  229 (433)
                      ..+|++.+.           .+++++..+.+.+  .+|+++++.+.+... .+++.+.+.+.+.+++.||++++++.+..
T Consensus       148 ~~~v~~~~~~~i~~~~a~~e~~~~~a~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~v~~  227 (401)
T 3vrd_B          148 GVVIIAPPAPPFRCPPGPYERASQIAHYLKAHKSKSKVIILDNSQTFSKQAQFTKGWERLYGFGTENALIEWHPGPDAAV  227 (401)
T ss_dssp             CEEEEECCSSSCBCTTHHHHHHHHHHHHHHHHCTTCEEEEECSSSSCTTHHHHHHHHHHHSCTTSTTCSEEEECTTTTCE
T ss_pred             CcEEEecCCccEEeehHHHHHHHHHHHHHHhcCCCCEEEEEcccccccccccccHHHHHHHHHHHHhcCcEEEeCceEEE
Confidence            555554332           3466777776655  689999888776431 14556666667777899999999999999


Q ss_pred             EEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhhhcccccCCCcEEeCCC-CC-CCCCCeEEcCccccc-cccccC
Q 013952          230 FTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDF-FK-TSADDVYAVGDVATF-PMKLYR  306 (433)
Q Consensus       230 i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~~~~~g~i~vd~~-~~-t~~~~vfa~Gd~~~~-~~~~~~  306 (433)
                      ++.+.+.  ..+.+.+|+++++|.+++++|.+|+..+.+.++..++|+|.||++ || |++|||||+|||+.. +.+   
T Consensus       228 v~~~~~~--~~v~~~~g~~i~~D~vi~~~g~~~~~~~~~~gl~~~~G~i~VD~~tl~~t~~p~VfAiGDva~~~~~p---  302 (401)
T 3vrd_B          228 VKTDTEA--MTVETSFGETFKAAVINLIPPQRAGKIAQSASLTNDSGWCPVDIRTFESSLQPGIHVIGDACNAAPMP---  302 (401)
T ss_dssp             EEEETTT--TEEEETTSCEEECSEEEECCCEEECHHHHHTTCCCTTSSBCBCTTTCBBSSSTTEEECGGGBCCTTSC---
T ss_pred             EEecccc--eEEEcCCCcEEEeeEEEEecCcCCchhHhhccccccCCCEEECCCcceecCCCCEEEecccccCCCCC---
Confidence            9873333  568899999999999999999999876666677668899999987 65 799999999999864 333   


Q ss_pred             cccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEE
Q 013952          307 EMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYS  348 (433)
Q Consensus       307 ~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~  348 (433)
                           +++..|.+||+++|+||++...++++.++.+..++++
T Consensus       303 -----k~a~~A~~qa~v~A~ni~~~l~G~~~~~~~y~~~~~~  339 (401)
T 3vrd_B          303 -----KSAYSANSQAKVAAAAVVALLKGEEPGTPSYLNTCYS  339 (401)
T ss_dssp             -----BSHHHHHHHHHHHHHHHHHHHHTCCCCCCCEEEEEEE
T ss_pred             -----chHHHHHHHHHHHHHHHHHHhcCCCCCCcccCCeEEE
Confidence                 6788999999999999998877776666666665554

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=100.00  E-value=2.4e-38  Score=295.07  Aligned_cols=291  Identities=24%  Similarity=0.257  Sum_probs=211.9

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHh
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   83 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (433)
                      ..+||+|||||++|+++|..|++.|++   |+|+|+.. +.      +.+.........+++....+......+.+.+++
T Consensus        15 ~~~dvvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~-~g------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (319)
T 3cty_A           15 RDFDVVIVGAGAAGFSAAVYAARSGFS---VAILDKAV-AG------GLTAEAPLVENYLGFKSIVGSELAKLFADHAAN   84 (319)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSS-TT------GGGGGCSCBCCBTTBSSBCHHHHHHHHHHHHHT
T ss_pred             CCCcEEEECcCHHHHHHHHHHHhCCCc---EEEEeCCC-CC------ccccccchhhhcCCCcccCHHHHHHHHHHHHHH
Confidence            458999999999999999999999987   99999961 11      111111111112221000000111223445566


Q ss_pred             CCcEEEeCceEEEEECCCC--EEEeCCCcEEecceEEEccCCCccccCCCCCCCCCC---CCEEEecCHHHHHHHHHHHH
Q 013952           84 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADA---KNIFYLREIDDADKLVEAIK  158 (433)
Q Consensus        84 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~---~~v~~~~~~~~~~~~~~~~~  158 (433)
                      .+++++. ..+..++.+.+  .|.+ ++.++.||++|+|||+.|..|+   +++.+.   ..++........        
T Consensus        85 ~~v~~~~-~~v~~i~~~~~~~~v~~-~~~~~~~~~li~AtG~~~~~~~---i~g~~~~~~~~~~~~~~~~~~--------  151 (319)
T 3cty_A           85 YAKIREG-VEVRSIKKTQGGFDIET-NDDTYHAKYVIITTGTTHKHLG---VKGESEYFGKGTSYCSTCDGY--------  151 (319)
T ss_dssp             TSEEEET-CCEEEEEEETTEEEEEE-SSSEEEEEEEEECCCEEECCCC---CBTTTTTBTTTEESCHHHHGG--------
T ss_pred             cCCEEEE-eeEEEEEEeCCEEEEEE-CCCEEEeCEEEECCCCCcccCC---CCChHHhCCceEEEEEecchh--------
Confidence            7999988 58988887665  4555 5668999999999999888776   455432   344432222111        


Q ss_pred             hcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcE
Q 013952          159 AKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEV  238 (433)
Q Consensus       159 ~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~  238 (433)
                      ...+++++|||+|++|+|+|..|.+.+.+|+++++.+.+..   ++.    +.+.+++.||++++++++.++.. +++++
T Consensus       152 ~~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~~~---~~~----l~~~l~~~gv~i~~~~~v~~i~~-~~~~v  223 (319)
T 3cty_A          152 LFKGKRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYMC---ENA----YVQEIKKRNIPYIMNAQVTEIVG-DGKKV  223 (319)
T ss_dssp             GGBTSEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSCCS---CHH----HHHHHHHTTCCEECSEEEEEEEE-SSSSE
T ss_pred             hcCCCeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCccCC---CHH----HHHHHhcCCcEEEcCCeEEEEec-CCceE
Confidence            12578999999999999999999999999999998876642   444    44556689999999999999987 34445


Q ss_pred             EEEEeC---CCc--EEECCEEEEcccCccChhhhhc-cccc-CCCcEEeCCCCCCCCCCeEEcCccccccccccCccccc
Q 013952          239 KEVKLK---DGR--TLEADIVVVGVGGRPLISLFKG-QVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRV  311 (433)
Q Consensus       239 ~~v~~~---~g~--~i~~d~vi~a~G~~p~~~~~~~-~~~~-~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~  311 (433)
                      ..+.+.   +|+  ++++|.||+|+|++|+.+++.. ++.. ++|+|.||+++||+.|+|||+|||+..+.         
T Consensus       224 ~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~---------  294 (319)
T 3cty_A          224 TGVKYKDRTTGEEKLIETDGVFIYVGLIPQTSFLKDSGVKLDERGYIVVDSRQRTSVPGVYAAGDVTSGNF---------  294 (319)
T ss_dssp             EEEEEEETTTCCEEEECCSEEEECCCEEECCGGGTTSCCCBCTTSCBCCCTTCBCSSTTEEECSTTBTTCC---------
T ss_pred             EEEEEEEcCCCceEEEecCEEEEeeCCccChHHHhhccccccCCccEeCCCCCccCCCCEEEeecccCcch---------
Confidence            566664   564  6999999999999999988754 4665 56899999999999999999999998642         


Q ss_pred             ccHHHHHHHHHHHHHHHhccCCC
Q 013952          312 EHVDHARKSAEQAVKTIMATEGG  334 (433)
Q Consensus       312 ~~~~~A~~~g~~aa~~i~~~~~~  334 (433)
                      .++..|..||+.||.||.....+
T Consensus       295 ~~~~~A~~~g~~aa~~i~~~l~~  317 (319)
T 3cty_A          295 AQIASAVGDGCKAALSLYSDSIS  317 (319)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTC
T ss_pred             hhHHHHHHHHHHHHHHHHHHhhc
Confidence            56888999999999999876543

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=100.00  E-value=1.6e-38  Score=297.84  Aligned_cols=296  Identities=19%  Similarity=0.256  Sum_probs=217.9

Q ss_pred             CCCC--cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccc--CC-CCCCCCCCcccccCCCCCC
Q 013952            1 MAEK--SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYL--FP-EGTARLPGFHVCVGSGGER   75 (433)
Q Consensus         1 Mm~~--~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~   75 (433)
                      ||..  ++||+|||||+||+++|..|++.|++   |+|+|++..      +.+.+.  .+ ......+++..........
T Consensus         1 M~~~~~~~~vvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~------~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (332)
T 3lzw_A            1 MREDTKVYDITIIGGGPVGLFTAFYGGMRQAS---VKIIESLPQ------LGGQLSALYPEKYIYDVAGFPKIRAQELIN   71 (332)
T ss_dssp             CEEEEEEEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSS------SCHHHHHHCTTSEECCSTTCSSEEHHHHHH
T ss_pred             CCCCCccceEEEECCCHHHHHHHHHHHHCCCC---EEEEEcCCC------CCceehhcCCCceEeccCCCCCCCHHHHHH
Confidence            5532  48999999999999999999999987   999999811      111110  00 0111222222111111122


Q ss_pred             CCHhHHHhCCcEEEeCceEEEEECCCC---EEEeCCCcEEecceEEEccCC---CccccCCCCCCCCCC---CCEEEecC
Q 013952           76 LLPEWYKEKGIELILSTEIVRADIASK---TLLSATGLIFKYQILVIATGS---TVLRLTDFGVEGADA---KNIFYLRE  146 (433)
Q Consensus        76 ~~~~~~~~~~v~~~~~~~v~~i~~~~~---~v~~~~~~~~~~d~lvlAtG~---~~~~~~~~~~~g~~~---~~v~~~~~  146 (433)
                      .+.+.+.+.+++++.++.|..++...+   .|.+.+++ +.||+||+|||+   .|..|+   ++|.+.   ..++.  .
T Consensus        72 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~-~~~d~vVlAtG~~~~~p~~~~---~~g~~~~~g~~~~~--~  145 (332)
T 3lzw_A           72 NLKEQMAKFDQTICLEQAVESVEKQADGVFKLVTNEET-HYSKTVIITAGNGAFKPRKLE---LENAEQYEGKNLHY--F  145 (332)
T ss_dssp             HHHHHHTTSCCEEECSCCEEEEEECTTSCEEEEESSEE-EEEEEEEECCTTSCCEECCCC---CTTGGGGBTTTEES--S
T ss_pred             HHHHHHHHhCCcEEccCEEEEEEECCCCcEEEEECCCE-EEeCEEEECCCCCcCCCCCCC---CCChhhccCceEEE--e
Confidence            344555667999999999999998776   67777765 999999999999   777666   455432   33432  2


Q ss_pred             HHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCe
Q 013952          147 IDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTV  226 (433)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~  226 (433)
                      ..+...+       ++++++|||+|.+++|+|..|.+.+.+|+++.+.+.+.+  .+..     .+.+++.||+++++++
T Consensus       146 ~~~~~~~-------~~~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~~--~~~~-----~~~l~~~gv~~~~~~~  211 (332)
T 3lzw_A          146 VDDLQKF-------AGRRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKFRA--HEHS-----VENLHASKVNVLTPFV  211 (332)
T ss_dssp             CSCGGGG-------BTCEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSCSS--CHHH-----HHHHHHSSCEEETTEE
T ss_pred             cCCHHHc-------CCCEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcCCc--cHHH-----HHHHhcCCeEEEeCce
Confidence            2222221       578999999999999999999999999999999887754  2222     3447889999999999


Q ss_pred             EEEEEecCCCcEEEEEeCC-----CcEEECCEEEEcccCccChhhhhc-ccccCCCcEEeCCCCCCCCCCeEEcCccccc
Q 013952          227 AVGFTTNADGEVKEVKLKD-----GRTLEADIVVVGVGGRPLISLFKG-QVAENKGGIETDDFFKTSADDVYAVGDVATF  300 (433)
Q Consensus       227 v~~i~~~~~g~~~~v~~~~-----g~~i~~d~vi~a~G~~p~~~~~~~-~~~~~~g~i~vd~~~~t~~~~vfa~Gd~~~~  300 (433)
                      +.++..  ++....+.+.+     ++++++|.||+|+|++|+..++.. ++..++|+|.||+++||+.|+|||+|||+..
T Consensus       212 v~~i~~--~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~  289 (332)
T 3lzw_A          212 PAELIG--EDKIEQLVLEEVKGDRKEILEIDDLIVNYGFVSSLGPIKNWGLDIEKNSIVVKSTMETNIEGFFAAGDICTY  289 (332)
T ss_dssp             EEEEEC--SSSCCEEEEEETTSCCEEEEECSEEEECCCEECCCGGGGGSSCCEETTEEECCTTSBCSSTTEEECGGGEEC
T ss_pred             eeEEec--CCceEEEEEEecCCCceEEEECCEEEEeeccCCCchHHhhcCccccCCeEEeCCCCceecCCEEEccceecC
Confidence            999987  33345566654     357999999999999999887754 5666789999999999999999999999975


Q ss_pred             cccccCcccccccHHHHHHHHHHHHHHHhccCCC
Q 013952          301 PMKLYREMRRVEHVDHARKSAEQAVKTIMATEGG  334 (433)
Q Consensus       301 ~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~  334 (433)
                      +..       .+++..|..||+.||.+|.....+
T Consensus       290 ~~~-------~~~~~~A~~~g~~aa~~i~~~l~~  316 (332)
T 3lzw_A          290 EGK-------VNLIASGFGEAPTAVNNAKAYMDP  316 (332)
T ss_dssp             TTC-------CCCHHHHHHHHHHHHHHHHHHHCT
T ss_pred             CCC-------cceEeeehhhHHHHHHHHHHhhCh
Confidence            422       167899999999999999887654

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=100.00  E-value=2.6e-38  Score=295.25  Aligned_cols=291  Identities=20%  Similarity=0.227  Sum_probs=215.9

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      ++||+|||||++|+++|.+|++.|++   |+|+|++  +.      +.+........++.+...........+.+.+++.
T Consensus        15 ~~~vvIIG~G~aGl~aA~~l~~~g~~---v~lie~~--~g------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (323)
T 3f8d_A           15 KFDVIIVGLGPAAYGAALYSARYMLK---TLVIGET--PG------GQLTEAGIVDDYLGLIEIQASDMIKVFNKHIEKY   83 (323)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESS--TT------GGGGGCCEECCSTTSTTEEHHHHHHHHHHHHHTT
T ss_pred             ccCEEEECccHHHHHHHHHHHHCCCc---EEEEecc--CC------CeecccccccccCCCCCCCHHHHHHHHHHHHHHc
Confidence            47999999999999999999999987   9999997  11      1111111112222222111111122344566678


Q ss_pred             CcEEEeCceEEEEECCCC--EEEeCCCcEEecceEEEccCCCccccCCCCCCCCCC---CCEEEecCHHHHHHHHHHHHh
Q 013952           85 GIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADA---KNIFYLREIDDADKLVEAIKA  159 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~---~~v~~~~~~~~~~~~~~~~~~  159 (433)
                      +++++. ..|..++.+++  .+.+.++.++.||+||+|||+.|..|+   +++.+.   ..+++.. ..+.       ..
T Consensus        84 ~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~~~~~---i~g~~~~~~~~~~~~~-~~~~-------~~  151 (323)
T 3f8d_A           84 EVPVLL-DIVEKIENRGDEFVVKTKRKGEFKADSVILGIGVKRRKLG---VPGEQEFAGRGISYCS-VADA-------PL  151 (323)
T ss_dssp             TCCEEE-SCEEEEEEC--CEEEEESSSCEEEEEEEEECCCCEECCCC---CTTTTTTBTTTEESCH-HHHG-------GG
T ss_pred             CCEEEE-EEEEEEEecCCEEEEEECCCCEEEcCEEEECcCCCCccCC---CCchhhhcCCceEEec-cCCH-------hH
Confidence            999999 79999987754  567777789999999999999988776   455443   4444321 1111       12


Q ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEE
Q 013952          160 KKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVK  239 (433)
Q Consensus       160 ~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~  239 (433)
                      ..+++++|+|+|.+++|+|..|.+.|.+|+++++.+.+.+   ++++   +.+.+++.||++++++++.++..  ++...
T Consensus       152 ~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~~---~~~~---~~~~~~~~gv~~~~~~~v~~i~~--~~~~~  223 (323)
T 3f8d_A          152 FKNRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKA---QPIY---VETVKKKPNVEFVLNSVVKEIKG--DKVVK  223 (323)
T ss_dssp             GTTCEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSCCS---CHHH---HHHHHTCTTEEEECSEEEEEEEE--SSSEE
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCCCc---CHHH---HHHHHhCCCcEEEeCCEEEEEec--cCcee
Confidence            2579999999999999999999999999999999988765   3332   33344456999999999999987  46666


Q ss_pred             EEEeCC---Cc--EEECCEEEEcccCccChhhhhc-cccc-CCCcEEeCCCCCCCCCCeEEcCccccccccccCcccccc
Q 013952          240 EVKLKD---GR--TLEADIVVVGVGGRPLISLFKG-QVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVE  312 (433)
Q Consensus       240 ~v~~~~---g~--~i~~d~vi~a~G~~p~~~~~~~-~~~~-~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~  312 (433)
                      .+.+.+   |+  ++++|.||+++|++|+.++++. ++.. ++|+|.||++++|+.|+|||+|||+..+.       ..+
T Consensus       224 ~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~g~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~-------~~~  296 (323)
T 3f8d_A          224 QVVVENLKTGEIKELNVNGVFIEIGFDPPTDFAKSNGIETDTNGYIKVDEWMRTSVPGVFAAGDCTSAWL-------GFR  296 (323)
T ss_dssp             EEEEEETTTCCEEEEECSEEEECCCEECCHHHHHHTTCCBCTTSSBCCCTTCBCSSTTEEECSTTBSTTT-------TCC
T ss_pred             EEEEEECCCCceEEEEcCEEEEEECCCCChhHHhhcCeeecCCCcEecCCCceecCCCEEEcceecCCCC-------ccc
Confidence            677765   65  7999999999999999887753 5665 67899999999999999999999998641       116


Q ss_pred             cHHHHHHHHHHHHHHHhccCC
Q 013952          313 HVDHARKSAEQAVKTIMATEG  333 (433)
Q Consensus       313 ~~~~A~~~g~~aa~~i~~~~~  333 (433)
                      .+..|..+|+.||.+|.....
T Consensus       297 ~~~~A~~~g~~aa~~i~~~l~  317 (323)
T 3f8d_A          297 QVITAVAQGAVAATSAYRYVT  317 (323)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceeehhhHHHHHHHHHHHHHH
Confidence            789999999999999986543

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=100.00  E-value=4.1e-38  Score=292.43  Aligned_cols=288  Identities=20%  Similarity=0.209  Sum_probs=211.0

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCC-CCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccC-CCCCCCCHhHHHh
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGV-KPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVG-SGGERLLPEWYKE   83 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~-~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~   83 (433)
                      +||+|||||++|+++|..|++.|+ +   |+|+|++. +      .+.+.........+++..... ......+.+.+.+
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~~---v~lie~~~-~------gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~   71 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATRGGVKN---AVLFEKGM-P------GGQITGSSEIENYPGVKEVVSGLDFMQPWQEQCFR   71 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCSS---EEEECSSS-T------TCGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHHT
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCc---EEEEcCCC-C------CcccccccccccCCCCcccCCHHHHHHHHHHHHHH
Confidence            699999999999999999999998 6   99999971 1      011111111111222211000 0011223445566


Q ss_pred             CCcEEEeCceEEEEECCCC--EEEeCCCcEEecceEEEccCCCccccCCCCCCCCC---CCCEEEecCHHHHHHHHHHHH
Q 013952           84 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRLTDFGVEGAD---AKNIFYLREIDDADKLVEAIK  158 (433)
Q Consensus        84 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~---~~~v~~~~~~~~~~~~~~~~~  158 (433)
                      .+++++. ..+..++.+.+  .+.+.+++++.||+||+|||+.|..|+   ++|.+   ...++++......        
T Consensus        72 ~~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~~~---~~g~~~~~~~~~~~~~~~~~~--------  139 (311)
T 2q0l_A           72 FGLKHEM-TAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGGSPKRTG---IKGESEYWGKGVSTCATCDGF--------  139 (311)
T ss_dssp             TSCEEEC-SCEEEEEEETTEEEEEETTSCEEEEEEEEECCCEEECCCC---CBTHHHHBTTTEESCHHHHGG--------
T ss_pred             cCCEEEE-EEEEEEEEcCCEEEEEEcCCCEEECCEEEECCCCCCCCCC---CCChhhccCCcEEEeecCChh--------
Confidence            7999988 68998887666  566778888999999999999888776   45532   2345443222211        


Q ss_pred             hcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHH-hcCcEEEcCCeEEEEEecCCCc
Q 013952          159 AKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYA-NKGIKIIKGTVAVGFTTNADGE  237 (433)
Q Consensus       159 ~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~-~~GV~v~~~~~v~~i~~~~~g~  237 (433)
                      ...+++++|||+|++|+|+|..|.+.|.+|+++++.+.+.   .++.+    .+.+. +.||++++++.+.++.. +++.
T Consensus       140 ~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~---~~~~~----~~~l~~~~gv~v~~~~~v~~i~~-~~~~  211 (311)
T 2q0l_A          140 FYKNKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFR---CAPIT----LEHAKNNDKIEFLTPYVVEEIKG-DASG  211 (311)
T ss_dssp             GGTTSEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSCC---SCHHH----HHHHHTCTTEEEETTEEEEEEEE-ETTE
T ss_pred             hcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCccC---CCHHH----HHHHhhCCCeEEEeCCEEEEEEC-CCCc
Confidence            1257899999999999999999999999999999987763   34443    33344 57999999999999987 2344


Q ss_pred             EEEEEeC---CCc--EEECCEEEEcccCccChhhhhcc-----ccc-CCCcEEeCCCCCCCCCCeEEcCccccccccccC
Q 013952          238 VKEVKLK---DGR--TLEADIVVVGVGGRPLISLFKGQ-----VAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYR  306 (433)
Q Consensus       238 ~~~v~~~---~g~--~i~~d~vi~a~G~~p~~~~~~~~-----~~~-~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~  306 (433)
                      +..+.+.   +|+  ++++|.||+|+|++|++++++..     +.. ++|+|.||+++||+.|+|||+|||+..+.    
T Consensus       212 v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~g~~~~l~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~----  287 (311)
T 2q0l_A          212 VSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLKQEDNSMLCKCDEYGSIVVDFSMKTNVQGLFAAGDIRIFAP----  287 (311)
T ss_dssp             EEEEEEEETTTCCEEEEECSEEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCTTCBCSSTTEEECSTTBTTCC----
T ss_pred             EeEEEEEecCCCceEEEecCEEEEEecCccChhhhhcccccceeEeccCCCEEeCCccccCCCCeEEcccccCcch----
Confidence            4456665   565  79999999999999999887543     555 56899999999999999999999998632    


Q ss_pred             cccccccHHHHHHHHHHHHHHHhccC
Q 013952          307 EMRRVEHVDHARKSAEQAVKTIMATE  332 (433)
Q Consensus       307 ~~~~~~~~~~A~~~g~~aa~~i~~~~  332 (433)
                           +++..|..||+.||.||....
T Consensus       288 -----~~~~~A~~~g~~aa~~i~~~l  308 (311)
T 2q0l_A          288 -----KQVVCAASDGATAALSVISYL  308 (311)
T ss_dssp             -----CCHHHHHHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHhHHHHHHHHHHHH
Confidence                 578889999999999997643

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=100.00  E-value=1.6e-38  Score=298.58  Aligned_cols=299  Identities=21%  Similarity=0.210  Sum_probs=218.3

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccc-cCCCCCCCCHhHHH
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVC-VGSGGERLLPEWYK   82 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~   82 (433)
                      .++||+|||||++|+++|.+|++.|++   |+|+|+..  .......+.+........+++++.. ........+...++
T Consensus        21 ~~~~vvIIG~G~aGl~aA~~l~~~g~~---v~vie~~~--~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (338)
T 3itj_A           21 VHNKVTIIGSGPAAHTAAIYLARAEIK---PILYEGMM--ANGIAAGGQLTTTTEIENFPGFPDGLTGSELMDRMREQST   95 (338)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCC---CEEECCSS--BTTBCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCC---EEEEecCC--CCCCCcCcccccchhhcccCCCcccCCHHHHHHHHHHHHH
Confidence            358999999999999999999999987   99999962  0011122222222212222332210 00111233456667


Q ss_pred             hCCcEEEeCceEEEEECCCCEEEe-----CCCcEEecceEEEccCCCccccCCCCCCCCC---CCCEEEecCHHHHHHHH
Q 013952           83 EKGIELILSTEIVRADIASKTLLS-----ATGLIFKYQILVIATGSTVLRLTDFGVEGAD---AKNIFYLREIDDADKLV  154 (433)
Q Consensus        83 ~~~v~~~~~~~v~~i~~~~~~v~~-----~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~---~~~v~~~~~~~~~~~~~  154 (433)
                      +.+++++.++ +..++.+.+.+.+     .++.++.||+||+|||+.|..|+   ++|.+   ...+.+...      ..
T Consensus        96 ~~gv~i~~~~-v~~i~~~~~~~~v~~~~~~~~~~~~~d~vvlAtG~~~~~~~---~~g~~~~~~~~~~~~~~------~~  165 (338)
T 3itj_A           96 KFGTEIITET-VSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGASAKRMH---LPGEETYWQKGISACAV------CD  165 (338)
T ss_dssp             HTTCEEECSC-EEEEECSSSSEEEEETTCSSSCCEEEEEEEECCCEEECCCC---CTTHHHHBTTTEESCHH------HH
T ss_pred             HcCCEEEEeE-EEEEEEcCCEEEEEEEecCCCcEEEeCEEEECcCCCcCCCC---CCCchhccCccEEEchh------cc
Confidence            7899999986 9999988776544     46678999999999999888776   45532   233433221      11


Q ss_pred             HHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHh-cCcEEEcCCeEEEEEec
Q 013952          155 EAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYAN-KGIKIIKGTVAVGFTTN  233 (433)
Q Consensus       155 ~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~-~GV~v~~~~~v~~i~~~  233 (433)
                      ..+....+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+.+       .+.+.+.+.+ .||++++++.+.++.. 
T Consensus       166 ~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~~-------~~~~~~~l~~~~gv~i~~~~~v~~i~~-  237 (338)
T 3itj_A          166 GAVPIFRNKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRA-------STIMQKRAEKNEKIEILYNTVALEAKG-  237 (338)
T ss_dssp             TTSGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS-------CHHHHHHHHHCTTEEEECSEEEEEEEE-
T ss_pred             cchhhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccCC-------CHHHHHHHHhcCCeEEeecceeEEEEc-
Confidence            111122578999999999999999999999999999999887654       2334455555 4999999999999987 


Q ss_pred             CCCcEEEEEeCC-----CcEEECCEEEEcccCccChhhhhccccc-CCCcEEe-CCCCCCCCCCeEEcCccccccccccC
Q 013952          234 ADGEVKEVKLKD-----GRTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIET-DDFFKTSADDVYAVGDVATFPMKLYR  306 (433)
Q Consensus       234 ~~g~~~~v~~~~-----g~~i~~d~vi~a~G~~p~~~~~~~~~~~-~~g~i~v-d~~~~t~~~~vfa~Gd~~~~~~~~~~  306 (433)
                      +++.+..|.+.+     ++++++|.||+|+|++|+..++..++.. ++|++.+ |++++|+.|+|||+|||+..+.    
T Consensus       238 ~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~v~~~~~~t~~~~vya~GD~~~~~~----  313 (338)
T 3itj_A          238 DGKLLNALRIKNTKKNEETDLPVSGLFYAIGHTPATKIVAGQVDTDEAGYIKTVPGSSLTSVPGFFAAGDVQDSKY----  313 (338)
T ss_dssp             SSSSEEEEEEEETTTTEEEEEECSEEEECSCEEECCGGGBTTBCBCTTSCBCCCTTSSBCSSTTEEECGGGGCSSC----
T ss_pred             ccCcEEEEEEEECCCCceEEEEeCEEEEEeCCCCChhHhhCceEecCCCcEEEcCcccccCCCCEEEeeccCCCCc----
Confidence            345566677765     4679999999999999999988777776 5788884 8889999999999999998432    


Q ss_pred             cccccccHHHHHHHHHHHHHHHhccCCC
Q 013952          307 EMRRVEHVDHARKSAEQAVKTIMATEGG  334 (433)
Q Consensus       307 ~~~~~~~~~~A~~~g~~aa~~i~~~~~~  334 (433)
                           +.+..|..+|+.||.+|...+.+
T Consensus       314 -----~~~~~A~~~g~~aa~~i~~~l~~  336 (338)
T 3itj_A          314 -----RQAITSAGSGCMAALDAEKYLTS  336 (338)
T ss_dssp             -----CCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             -----cceeeehhhhHHHHHHHHHHHhc
Confidence                 57888999999999999876543

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=100.00  E-value=2e-38  Score=293.29  Aligned_cols=283  Identities=14%  Similarity=0.113  Sum_probs=197.7

Q ss_pred             CCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCC---CCCCCCHh
Q 013952            3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGS---GGERLLPE   79 (433)
Q Consensus         3 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~   79 (433)
                      |++|||+||||||||++||.+|+++|++   |+|+|++. +      .+.+.     .+.+++....+.   .......+
T Consensus         4 M~~yDVvIIGaGpAGlsAA~~lar~g~~---v~lie~~~-~------gg~~~-----~~~~~~~~~~~~~~~~~~~~~~~   68 (304)
T 4fk1_A            4 MKYIDCAVIGAGPAGLNASLVLGRARKQ---IALFDNNT-N------RNRVT-----QNSHGFITRDGIKPEEFKEIGLN   68 (304)
T ss_dssp             --CEEEEEECCSHHHHHHHHHHHHTTCC---EEEEECSC-C------GGGGS-----SCBCCSTTCTTBCHHHHHHHHHH
T ss_pred             CCCcCEEEECCCHHHHHHHHHHHHCCCC---EEEEeCCC-C------CCeee-----eecCCccCCCCCCHHHHHHHHHH
Confidence            4579999999999999999999999987   99999981 0      11111     111111110000   00011112


Q ss_pred             HHHhC-CcEEEeCceEEEEECCC---CEEEeCCCcEEecceEEEccCCCccccCCCCCCCCC---CCCEEEecCHHHHHH
Q 013952           80 WYKEK-GIELILSTEIVRADIAS---KTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGAD---AKNIFYLREIDDADK  152 (433)
Q Consensus        80 ~~~~~-~v~~~~~~~v~~i~~~~---~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~---~~~v~~~~~~~~~~~  152 (433)
                      .+.++ .+.+... .+..+....   .++.+.+++++.||+||||||++|+.|+   +||.+   ...+++.......  
T Consensus        69 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~g~~~~a~~liiATGs~p~~p~---i~G~~~~~~~~v~~~~~~~~~--  142 (304)
T 4fk1_A           69 EVMKYPSVHYYEK-TVVMITKQSTGLFEIVTKDHTKYLAERVLLATGMQEEFPS---IPNVREYYGKSLFSCPYCDGW--  142 (304)
T ss_dssp             HHTTSTTEEEEEC-CEEEEEECTTSCEEEEETTCCEEEEEEEEECCCCEEECCS---CTTHHHHBTTTEESCHHHHSG--
T ss_pred             HHHhcCCEEEEee-EEEEeeecCCCcEEEEECCCCEEEeCEEEEccCCcccccc---ccCccccccceeeeccccchh--
Confidence            22333 4556554 455444322   3678889999999999999999999887   45532   3445543222111  


Q ss_pred             HHHHHHhcCCCcEEEECCCH-HHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEE
Q 013952          153 LVEAIKAKKNGKAVVVGGGY-IGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFT  231 (433)
Q Consensus       153 ~~~~~~~~~~~~v~ViG~G~-~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~  231 (433)
                            ..++++++|||+|. .++|+|..+.+.+.+|+++.+.+.+     .    +.+.+.+++.|++++.++ +..+.
T Consensus       143 ------~~~~~~~~VIggG~~~~~e~a~~~~~~~~~v~i~~~~~~~-----~----~~~~~~l~~~g~~~~~~~-v~~~~  206 (304)
T 4fk1_A          143 ------ELKDQPLIIISENEDHTLHMTKLVYNWSTDLVIATNGNEL-----S----QTIMDELSNKNIPVITES-IRTLQ  206 (304)
T ss_dssp             ------GGTTSCEEEECCSHHHHHHHHHHHTTTCSCEEEECSSCCC-----C----HHHHHHHHTTTCCEECSC-EEEEE
T ss_pred             ------HhcCCceeeecCCCchhhhHHHHHHhCCceEEEEeccccc-----h----hhhhhhhhccceeEeeee-EEEee
Confidence                  12567888888885 5689999999999999999876543     2    235567888999999764 77776


Q ss_pred             ecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh-hccccc-CCCcEEeCCCCCCCCCCeEEcCccccccccccCccc
Q 013952          232 TNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF-KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMR  309 (433)
Q Consensus       232 ~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~-~~~~~~-~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~  309 (433)
                      . +++++..+++.+|+++++|.+++++|.+|+..++ +.++++ ++|+|.||++||||+|||||+|||++.+.       
T Consensus       207 ~-~~~~~~~v~~~~g~~i~~~~~vi~~g~~~~~~~~~~~g~~~~~~G~I~vd~~~~Ts~p~IyA~GDv~~~~~-------  278 (304)
T 4fk1_A          207 G-EGGYLKKVEFHSGLRIERAGGFIVPTFFRPNQFIEQLGCELQSNGTFVIDDFGRTSEKNIYLAGETTTQGP-------  278 (304)
T ss_dssp             S-GGGCCCEEEETTSCEECCCEEEECCEEECSSCHHHHTTCCCCTTSSSCSSTTCBCSSTTEEECSHHHHTSC-------
T ss_pred             c-CCCeeeeeeccccceeeecceeeeeccccCChhhhhcCeEECCCCCEEECcCCccCCCCEEEEeccCCCcc-------
Confidence            5 4567778999999999999888877766555444 567777 67889999999999999999999997543       


Q ss_pred             ccccHHHHHHHHHHHHHHHhccC
Q 013952          310 RVEHVDHARKSAEQAVKTIMATE  332 (433)
Q Consensus       310 ~~~~~~~A~~~g~~aa~~i~~~~  332 (433)
                        .++..|..+|+.||.+|...+
T Consensus       279 --~~~~~A~~~G~~AA~~i~~~L  299 (304)
T 4fk1_A          279 --SSLIIAASQGNKAAIAINSDI  299 (304)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHH
T ss_pred             --hHHHHHHHHHHHHHHHHHHHH
Confidence              467889999999999986543

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=100.00  E-value=8e-38  Score=290.90  Aligned_cols=290  Identities=20%  Similarity=0.178  Sum_probs=211.9

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEE-EcCCCCCCCCCCccccccCCCCCCCCCCcccc-cCCCCCCCCHhHH
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAI-ISKEVAPYERPALSKAYLFPEGTARLPGFHVC-VGSGGERLLPEWY   81 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~l-ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~   81 (433)
                      .++||+|||||+||++||.+|++.|++   |+| +|+.. +      .+.+.........|++... ........+...+
T Consensus         3 ~~~~vvIIG~G~aGl~aA~~l~~~g~~---v~li~e~~~-~------gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (315)
T 3r9u_A            3 AMLDVAIIGGGPAGLSAGLYATRGGLK---NVVMFEKGM-P------GGQITSSSEIENYPGVAQVMDGISFMAPWSEQC   72 (315)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHTCS---CEEEECSSS-T------TGGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHH
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCC---eEEEEeCCC-C------CceeeeeceeccCCCCCCCCCHHHHHHHHHHHH
Confidence            458999999999999999999999987   888 99861 1      1111111122222332210 0001122344556


Q ss_pred             HhCCcEEEeCceEEEEECCC--CEEE--eCCCcEEecceEEEccCCCccccCCCCCCCCCC---CCEEEecCHHHHHHHH
Q 013952           82 KEKGIELILSTEIVRADIAS--KTLL--SATGLIFKYQILVIATGSTVLRLTDFGVEGADA---KNIFYLREIDDADKLV  154 (433)
Q Consensus        82 ~~~~v~~~~~~~v~~i~~~~--~~v~--~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~---~~v~~~~~~~~~~~~~  154 (433)
                      ++.+++++.+ .+..+ ++.  +.+.  +.++.++.||+||+|||+.|..|+   ++|.+.   ..+++.......    
T Consensus        73 ~~~~v~~~~~-~v~~i-~~~~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~---~~g~~~~~~~~~~~~~~~~~~----  143 (315)
T 3r9u_A           73 MRFGLKHEMV-GVEQI-LKNSDGSFTIKLEGGKTELAKAVIVCTGSAPKKAG---FKGEDEFFGKGVSTCATCDGF----  143 (315)
T ss_dssp             TTTCCEEECC-CEEEE-EECTTSCEEEEETTSCEEEEEEEEECCCEEECCCC---CBTTTTTBTTTEESCHHHHGG----
T ss_pred             HHcCcEEEEE-EEEEE-ecCCCCcEEEEEecCCEEEeCEEEEeeCCCCCCCC---CCChhhcCCCeEEeeeccccc----
Confidence            6789999987 88888 444  3333  433338999999999999888777   455432   444433221111    


Q ss_pred             HHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecC
Q 013952          155 EAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNA  234 (433)
Q Consensus       155 ~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~  234 (433)
                          ...+++++|+|+|++++|+|..|.+.+.+|+++++.+.+.   .++++   +.+.+++.||++++++.+.++.. +
T Consensus       144 ----~~~~~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~~---~~~~~---~~~~~~~~gv~~~~~~~v~~i~~-~  212 (315)
T 3r9u_A          144 ----FYKNKEVAVLGGGDTALEEALYLANICSKIYLIHRRDEFR---AAPST---VEKVKKNEKIELITSASVDEVYG-D  212 (315)
T ss_dssp             ----GGTTSEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSCB---SCHHH---HHHHHHCTTEEEECSCEEEEEEE-E
T ss_pred             ----ccCcCEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCCC---CCHHH---HHHHHhcCCeEEEeCcEEEEEEc-C
Confidence                1257999999999999999999999999999999988763   24443   34555789999999999999987 3


Q ss_pred             CCcEEEEEeC--CCc--EEECCEEEEcccCccChhhhhc-----cccc-CCCcEEeCCCCCCCCCCeEEcCccccccccc
Q 013952          235 DGEVKEVKLK--DGR--TLEADIVVVGVGGRPLISLFKG-----QVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKL  304 (433)
Q Consensus       235 ~g~~~~v~~~--~g~--~i~~d~vi~a~G~~p~~~~~~~-----~~~~-~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~  304 (433)
                      ++++..+.+.  +|+  ++++|.||+|+|++|+..++..     ++.. ++|+|.||+++||+.|+|||+|||+..+.  
T Consensus       213 ~~~~~~v~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~~~~g~l~~~~~g~i~vd~~~~t~~~~v~a~GD~~~~~~--  290 (315)
T 3r9u_A          213 KMGVAGVKVKLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDSKFLCNMEEGGQVSVDLKMQTSVAGLFAAGDLRKDAP--  290 (315)
T ss_dssp             TTEEEEEEEECTTSCEEEECCSCEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCTTCBCSSTTEEECGGGBTTCC--
T ss_pred             CCcEEEEEEEcCCCCeEEeecCeEEEEEcCCCCchhhhcccccceeeecCCCcEEeCCCcccCCCCEEEeecccCCch--
Confidence            4455566665  775  7999999999999999998865     4666 56899999999999999999999986432  


Q ss_pred             cCcccccccHHHHHHHHHHHHHHHhccC
Q 013952          305 YREMRRVEHVDHARKSAEQAVKTIMATE  332 (433)
Q Consensus       305 ~~~~~~~~~~~~A~~~g~~aa~~i~~~~  332 (433)
                             +.+..|..+|+.||.+|....
T Consensus       291 -------~~~~~A~~~g~~aa~~i~~~l  311 (315)
T 3r9u_A          291 -------KQVICAAGDGAVAALSAMAYI  311 (315)
T ss_dssp             -------CCHHHHHHHHHHHHHHHHHHH
T ss_pred             -------hhhhhHHhhHHHHHHHHHHHH
Confidence                   678899999999999998653

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=100.00  E-value=2.1e-37  Score=300.65  Aligned_cols=315  Identities=17%  Similarity=0.175  Sum_probs=231.7

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHH---cCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHh
Q 013952            4 KSFKYVILGGGVSAGYAAREFAK---QGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPE   79 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~---~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (433)
                      .++||||||||++|+++|.+|++   .+.+   |+|||++ ...|. +.... +...    ...      .......+.+
T Consensus         3 ~m~~vvIIGgG~aGl~aA~~L~~~~~~g~~---Vtlie~~~~~~~~-~~~~~-~~~g----~~~------~~~~~~~l~~   67 (437)
T 3sx6_A            3 GSAHVVILGAGTGGMPAAYEMKEALGSGHE---VTLISANDYFQFV-PSNPW-VGVG----WKE------RDDIAFPIRH   67 (437)
T ss_dssp             TSCEEEEECCSTTHHHHHHHHHHHHGGGSE---EEEECSSSEEECG-GGHHH-HHHT----SSC------HHHHEEECHH
T ss_pred             CCCcEEEECCcHHHHHHHHHHhccCCCcCE---EEEEeCCCCCccc-CCccc-cccC----ccC------HHHHHHHHHH
Confidence            45799999999999999999999   6665   9999999 33221 11110 0000    000      0011235677


Q ss_pred             HHHhCCcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCCCCCCCC--CCEEEecCHHHHHHHHHHH
Q 013952           80 WYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADA--KNIFYLREIDDADKLVEAI  157 (433)
Q Consensus        80 ~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~--~~v~~~~~~~~~~~~~~~~  157 (433)
                      ++++.+++++.+ .+..++++.++|.+.+++++.||+||+|||++|..++   +||.+.  ...+...+..++..+.+.+
T Consensus        68 ~~~~~gv~~~~~-~v~~id~~~~~V~~~~g~~i~~d~lviAtG~~~~~~~---ipG~~~~~~~~~~~~~~~~a~~~~~~~  143 (437)
T 3sx6_A           68 YVERKGIHFIAQ-SAEQIDAEAQNITLADGNTVHYDYLMIATGPKLAFEN---VPGSDPHEGPVQSICTVDHAERAFAEY  143 (437)
T ss_dssp             HHHTTTCEEECS-CEEEEETTTTEEEETTSCEEECSEEEECCCCEECGGG---STTCSTTTSSEECCSSHHHHHHHHHHH
T ss_pred             HHHHCCCEEEEe-EEEEEEcCCCEEEECCCCEEECCEEEECCCCCcCccc---CCCCCcccCcceecccccHHHHHHHHH
Confidence            788899999874 9999999999999999989999999999999998777   566553  3667778888888877766


Q ss_pred             Hhc-CCCcEEEECCCHH----H--HHHH----HHHHhCCCe-----EEEEccCCccCCCCC--CHHHHHHHHHHHHhcCc
Q 013952          158 KAK-KNGKAVVVGGGYI----G--LELS----AALKINNID-----VSMVYPEPWCMPRLF--TADIAAFYEGYYANKGI  219 (433)
Q Consensus       158 ~~~-~~~~v~ViG~G~~----g--~e~a----~~l~~~g~~-----V~li~~~~~~~~~~~--~~~~~~~l~~~l~~~GV  219 (433)
                      +.. ..++++|||+|+.    |  +|+|    ..+.+.|.+     |+++++.+.+.+..+  .++..+.+.+.+++.||
T Consensus       144 ~~~~~~~~~vVVGgG~~~g~~G~~~E~a~~la~~l~~~g~~~~~~~Vtlv~~~~~~~~~~l~~~~~~~~~~~~~l~~~gI  223 (437)
T 3sx6_A          144 QALLREPGPIVIGAMAGASCFGPAYEYAMIVASDLKKRGMRDKIPSFTFITSEPYIGHLGIQGVGDSKGILTKGLKEEGI  223 (437)
T ss_dssp             HHHHHSCCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCSCEEEEESSSSTTCTTTTCCTTHHHHHHHHHHHTTC
T ss_pred             HHHHhCCCEEEEEcCCCCCcCcHHHHHHHHHHHHHHHcCCcccCcEEEEEcCCccccccccCcchHHHHHHHHHHHHCCC
Confidence            532 2446788888543    4  7777    666777864     999999887632111  13578889999999999


Q ss_pred             EEEcCCeEEEEEecCCCcEEEEEeCC-----CcEEECCEEEEcccCccChhhhh-cccccCCCcEEeCCCCCC-CCCCeE
Q 013952          220 KIIKGTVAVGFTTNADGEVKEVKLKD-----GRTLEADIVVVGVGGRPLISLFK-GQVAENKGGIETDDFFKT-SADDVY  292 (433)
Q Consensus       220 ~v~~~~~v~~i~~~~~g~~~~v~~~~-----g~~i~~d~vi~a~G~~p~~~~~~-~~~~~~~g~i~vd~~~~t-~~~~vf  292 (433)
                      +++++++|++++.  ++........+     ++++++|.+++++|++|+..+.+ .++..++|+|.||++||| ++||||
T Consensus       224 ~~~~~~~v~~v~~--~~v~~~~~~~~g~~~~~~~i~~D~vv~~~g~~~~~~~~~~~gl~~~~G~i~Vd~~l~t~~~~~If  301 (437)
T 3sx6_A          224 EAYTNCKVTKVED--NKMYVTQVDEKGETIKEMVLPVKFGMMIPAFKGVPAVAGVEGLCNPGGFVLVDEHQRSKKYANIF  301 (437)
T ss_dssp             EEECSEEEEEEET--TEEEEEEECTTSCEEEEEEEECSEEEEECCEECCHHHHTSTTTBCTTSCBCBCTTSBBSSCTTEE
T ss_pred             EEEcCCEEEEEEC--CeEEEEecccCCccccceEEEEeEEEEcCCCcCchhhhccccccCCCCcEEeChhccCCCCCCEE
Confidence            9999999999975  33211111223     46799999999999998877664 355457889999999999 999999


Q ss_pred             EcCccccccccccCccc---ccccHHHHHHHHHHHHHHHhccCCCCCccCC
Q 013952          293 AVGDVATFPMKLYREMR---RVEHVDHARKSAEQAVKTIMATEGGKTVTGY  340 (433)
Q Consensus       293 a~Gd~~~~~~~~~~~~~---~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~  340 (433)
                      |+|||+..+... +.+.   .++++..|..||+.+|+||.....++++.+|
T Consensus       302 a~GD~~~~~~~~-~~~~~~~~pk~~~~A~~qg~~aA~ni~~~l~g~~~~~~  351 (437)
T 3sx6_A          302 AAGIAIAIPPVE-TTPVPTGAPKTGYMIESMVSAAVHNIKADLEGRKGEQT  351 (437)
T ss_dssp             ECGGGBCCCCSC-CCSSCCCCCCCHHHHHHHHHHHHHHHHHHTTTSCCCCC
T ss_pred             EEEEEeccCCcC-CCcCCCCCCcHHHHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence            999999876421 1111   1268899999999999999988877655543

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=100.00  E-value=6e-38  Score=294.19  Aligned_cols=302  Identities=19%  Similarity=0.200  Sum_probs=213.8

Q ss_pred             CCCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCccccc-CCCCCCCCH
Q 013952            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVCV-GSGGERLLP   78 (433)
Q Consensus         1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   78 (433)
                      |++.++||+|||||++|+++|..|++.|++   |+|+|+. ...   ....+.+.........+.+.... .......+.
T Consensus         4 ~~~~~~~vvIIG~G~aGl~~A~~l~~~g~~---v~lie~~~~~~---~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~   77 (333)
T 1vdc_A            4 LETHNTRLCIVGSGPAAHTAAIYAARAELK---PLLFEGWMAND---IAPGGQLTTTTDVENFPGFPEGILGVELTDKFR   77 (333)
T ss_dssp             CEEEEEEEEEECCSHHHHHHHHHHHHTTCC---CEEECCSSBTT---BCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHH
T ss_pred             CCCCCCCEEEECcCHHHHHHHHHHHHCCCe---EEEEeccCccc---cCCCceeeeccccccCCCCccCCCHHHHHHHHH
Confidence            334468999999999999999999999987   9999983 100   01111111111111222221100 001112334


Q ss_pred             hHHHhCCcEEEeCceEEEEECCCC--EEEeCCCcEEecceEEEccCCCccccCCCCCCCCCC-------CCEEEecCHHH
Q 013952           79 EWYKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADA-------KNIFYLREIDD  149 (433)
Q Consensus        79 ~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~-------~~v~~~~~~~~  149 (433)
                      +.+.+.+++++.++ +..++.+.+  +|.+ ++.+++||+||+|||+.|..|+   +++.+.       ..++.+...  
T Consensus        78 ~~~~~~gv~~~~~~-v~~i~~~~~~~~v~~-~~~~~~~~~vv~A~G~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~--  150 (333)
T 1vdc_A           78 KQSERFGTTIFTET-VTKVDFSSKPFKLFT-DSKAILADAVILAIGAVAKRLS---FVGSGEVLGGFWNRGISACAVC--  150 (333)
T ss_dssp             HHHHHTTCEEECCC-CCEEECSSSSEEEEC-SSEEEEEEEEEECCCEEECCCC---CBTCSSSSSCCBTTTEESCHHH--
T ss_pred             HHHHHCCCEEEEeE-EEEEEEcCCEEEEEE-CCcEEEcCEEEECCCCCcCCCC---CCCccccccccccCcEEEeccC--
Confidence            55667899999985 888987665  5666 6778999999999999988776   455432       233322111  


Q ss_pred             HHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEE
Q 013952          150 ADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVG  229 (433)
Q Consensus       150 ~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~  229 (433)
                          ...+....+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+..   .+.+.   .+.+++.||++++++++.+
T Consensus       151 ----~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~---~~~~~---~~~~~~~gv~i~~~~~v~~  220 (333)
T 1vdc_A          151 ----DGAAPIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA---SKIMQ---QRALSNPKIDVIWNSSVVE  220 (333)
T ss_dssp             ----HTTSGGGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS---CHHHH---HHHHTCTTEEEECSEEEEE
T ss_pred             ----ccchhhcCCCeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcCCc---cHHHH---HHHHhCCCeeEecCCceEE
Confidence                1111112578999999999999999999999999999999876542   33322   2445788999999999999


Q ss_pred             EEecCCC-cEEEEEeC---CC--cEEECCEEEEcccCccChhhhhccccc-CCCcEEeCCC-CCCCCCCeEEcCcccccc
Q 013952          230 FTTNADG-EVKEVKLK---DG--RTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDF-FKTSADDVYAVGDVATFP  301 (433)
Q Consensus       230 i~~~~~g-~~~~v~~~---~g--~~i~~d~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~-~~t~~~~vfa~Gd~~~~~  301 (433)
                      +..++++ ++..+.+.   +|  +++++|.||+|+|++|+..+++.++.. ++|+|.||++ ++|+.|+|||+|||+..+
T Consensus       221 i~~~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~vd~~~~~t~~~~vya~GD~~~~~  300 (333)
T 1vdc_A          221 AYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGHEPATKFLDGGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKK  300 (333)
T ss_dssp             EEESSSSSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTSSCBCTTSCBCCCTTSCBCSSTTEEECGGGGCSS
T ss_pred             EeCCCCccceeeEEEEecCCCceEEEecCEEEEEeCCccchHHhhccccccCCCCEEechhhcccCCCCEEEeeeccCCC
Confidence            9873221 55556654   44  579999999999999999988766665 4789999997 689999999999999865


Q ss_pred             ccccCcccccccHHHHHHHHHHHHHHHhccCCC
Q 013952          302 MKLYREMRRVEHVDHARKSAEQAVKTIMATEGG  334 (433)
Q Consensus       302 ~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~  334 (433)
                      .         ..+..|..+|+.||.+|.....+
T Consensus       301 ~---------~~~~~A~~~g~~aa~~i~~~l~~  324 (333)
T 1vdc_A          301 Y---------RQAITAAGTGCMAALDAEHYLQE  324 (333)
T ss_dssp             C---------CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             c---------hhHHHHHHhHHHHHHHHHHHHHh
Confidence            2         56888999999999999876543

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=100.00  E-value=7.8e-38  Score=302.66  Aligned_cols=308  Identities=17%  Similarity=0.160  Sum_probs=220.9

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      ++|||||||+||++||.+|++.+. +.+|+|||++ ...| +|.+..-........           +....+.+++++.
T Consensus         3 K~VvIIGgG~aGl~aA~~L~~~~~-~~~VtlI~~~~~~~~-~p~l~~v~~g~~~~~-----------~i~~~~~~~~~~~   69 (430)
T 3hyw_A            3 KHVVVIGGGVGGIATAYNLRNLMP-DLKITLISDRPYFGF-TPAFPHLAMGWRKFE-----------DISVPLAPLLPKF   69 (430)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCT-TCEEEEECSSSEEEC-GGGHHHHHHTCSCGG-----------GSEEESTTTGGGG
T ss_pred             CcEEEECCCHHHHHHHHHHhccCc-CCeEEEEcCCCCCcc-CccHHHHhcCCCCHH-----------HhhhcHHHHHHHC
Confidence            589999999999999999999873 5679999999 4333 333321110000000           1122345667778


Q ss_pred             CcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhc-CCC
Q 013952           85 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAK-KNG  163 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~-~~~  163 (433)
                      +++++.+ +|+.||+++++|++++|++++||+||||||+++. ++   +||.. ++.+.+++.+++.++++.+.+. ..+
T Consensus        70 gv~~i~~-~v~~Id~~~~~V~~~~g~~i~YD~LViAtG~~~~-~~---i~G~~-e~~~~~~~~~~a~~~~~~l~~~~~~~  143 (430)
T 3hyw_A           70 NIEFINE-KAESIDPDANTVTTQSGKKIEYDYLVIATGPKLV-FG---AEGQE-ENSTSICTAEHALETQKKLQELYANP  143 (430)
T ss_dssp             TEEEECS-CEEEEETTTTEEEETTCCEEECSEEEECCCCEEE-CC---SBTHH-HHSCCCSSHHHHHHHHHHHHHHHHSC
T ss_pred             CcEEEEe-EEEEEECCCCEEEECCCCEEECCEEEEeCCCCcc-CC---ccCcc-cCcCCcccHHHHHHHHHHHHhhccCC
Confidence            9999987 8999999999999999999999999999999753 33   56643 3456677888988888777643 234


Q ss_pred             cEEEECCCH------HHHHH----HHHHHhCC----CeEEEEccCCccCC--CCCCHHHHHHHHHHHHhcCcEEEcCCeE
Q 013952          164 KAVVVGGGY------IGLEL----SAALKINN----IDVSMVYPEPWCMP--RLFTADIAAFYEGYYANKGIKIIKGTVA  227 (433)
Q Consensus       164 ~v~ViG~G~------~g~e~----a~~l~~~g----~~V~li~~~~~~~~--~~~~~~~~~~l~~~l~~~GV~v~~~~~v  227 (433)
                      .++|+|++.      .+.|+    +..+.+.+    .+|++++..+.+..  ....+...+.+++.++++||++++++.|
T Consensus       144 ~~vv~gg~~gve~~~~~~e~a~~~~~~l~~~g~~~~v~v~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~~GV~~~~~~~v  223 (430)
T 3hyw_A          144 GPVVIGAIPGVSCFGPAYEFALMLHYELKKRGIRYKVPMTFITSEPYLGHFGVGGIGASKRLVEDLFAERNIDWIANVAV  223 (430)
T ss_dssp             CCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCCEEEECSSSSTTCTTTTCSTTHHHHHHHHHHHTTCEEECSCEE
T ss_pred             ceEEEeCCCcEEEhHHHHHHHHHHHHHHHHhcccccceeeeecccchhhhccchhhHHHHHHHHHHHHhCCeEEEeCceE
Confidence            455555542      23343    44455555    47888887765432  1245677888999999999999999999


Q ss_pred             EEEEecCCCcEEEEEeCCC--cEEECCEEEEcccCccChhhhhcccc--c-CCCcEEeCCCCC-CCCCCeEEcCcccccc
Q 013952          228 VGFTTNADGEVKEVKLKDG--RTLEADIVVVGVGGRPLISLFKGQVA--E-NKGGIETDDFFK-TSADDVYAVGDVATFP  301 (433)
Q Consensus       228 ~~i~~~~~g~~~~v~~~~g--~~i~~d~vi~a~G~~p~~~~~~~~~~--~-~~g~i~vd~~~~-t~~~~vfa~Gd~~~~~  301 (433)
                      ++++.  ++  ..+...+|  +++++|.+++++|.+|+..+...+..  . .+|++.||++|| |++|||||+|||+..+
T Consensus       224 ~~v~~--~~--~~~~~~~g~~~~i~~d~vi~~~G~~~~~~~~~~~~~l~~~~~g~i~vd~~lq~t~~~~IfAiGD~a~~p  299 (430)
T 3hyw_A          224 KAIEP--DK--VIYEDLNGNTHEVPAKFTMFMPSFQGPEVVASAGDKVANPANKMVIVNRCFQNPTYKNIFGVGVVTAIP  299 (430)
T ss_dssp             EEECS--SE--EEEECTTSCEEEEECSEEEEECEEECCHHHHTTCTTTBCTTTCCBCCCTTSBCSSSTTEEECSTTBCCC
T ss_pred             EEEeC--Cc--eEEEeeCCCceEeecceEEEeccCCCchHHHhcccccccCCceEEEecccccCCCCCCEEEeccEEecC
Confidence            99964  33  23343343  57999999999999998766655433  3 346799999999 7999999999999877


Q ss_pred             ccccCc--ccccccHHHHHHHHHHHHHHHhccCCCCC
Q 013952          302 MKLYRE--MRRVEHVDHARKSAEQAVKTIMATEGGKT  336 (433)
Q Consensus       302 ~~~~~~--~~~~~~~~~A~~~g~~aa~~i~~~~~~~~  336 (433)
                      ......  ...+++...|.+||+++|+||.....+++
T Consensus       300 ~~~~~~~~~~~pk~a~~A~~qg~~~A~Ni~~~l~g~~  336 (430)
T 3hyw_A          300 PIEKTPIPTGVPKTGMMIEQMAMAVAHNIVNDIRNNP  336 (430)
T ss_dssp             CSSCCSSCCCCCCCHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             CcccCcCcCccchHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            532110  01236788999999999999998877653

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=100.00  E-value=5.3e-38  Score=289.63  Aligned_cols=282  Identities=16%  Similarity=0.103  Sum_probs=206.2

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC-
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK-   84 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   84 (433)
                      +||+|||||++|+++|.+|++.|++   |+|+|++.. ..+      +.  .....++.............+.+.+.+. 
T Consensus         3 ~~vvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~-~~~------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   70 (297)
T 3fbs_A            3 FDVIIIGGSYAGLSAALQLGRARKN---ILLVDAGER-RNR------FA--SHSHGFLGQDGKAPGEIIAEARRQIERYP   70 (297)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCC---EEEEECCCC-GGG------GC--SCCCSSTTCTTCCHHHHHHHHHHHHTTCT
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCC---EEEEeCCCc-ccc------cc--hhhcCCcCCCCCCHHHHHHHHHHHHHhcC
Confidence            8999999999999999999999987   999998710 000      00  0001111110000000112233444454 


Q ss_pred             CcEEEeCceEEEEECCCC--EEEeCCCcEEecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCC
Q 013952           85 GIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKN  162 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~  162 (433)
                      +++++.+ +|..++++++  .|.+.+++++.||+||+|||+.|+.|+.+++.......+++.. ..+.       ....+
T Consensus        71 ~v~~~~~-~v~~i~~~~~~~~v~~~~g~~~~~d~vviAtG~~~~~~~~~g~~~~~~~~~~~~~-~~~~-------~~~~~  141 (297)
T 3fbs_A           71 TIHWVEG-RVTDAKGSFGEFIVEIDGGRRETAGRLILAMGVTDELPEIAGLRERWGSAVFHCP-YCHG-------YELDQ  141 (297)
T ss_dssp             TEEEEES-CEEEEEEETTEEEEEETTSCEEEEEEEEECCCCEEECCCCBTTGGGBTTTEESCH-HHHT-------GGGTT
T ss_pred             CeEEEEe-EEEEEEEcCCeEEEEECCCCEEEcCEEEECCCCCCCCCCCCCchhhcCCeeEEcc-cCcc-------hhhcC
Confidence            7888775 8999987654  6777888889999999999999887774332222224454332 1111       11258


Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEE
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVK  242 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~  242 (433)
                      ++++|+|+|++|+|+|..|.+.| +|+++.+.+..    +++    .+.+.+++.||+++. +++.++..  ++   .+.
T Consensus       142 ~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~~~----~~~----~~~~~l~~~gv~i~~-~~v~~i~~--~~---~v~  206 (297)
T 3fbs_A          142 GKIGVIAASPMAIHHALMLPDWG-ETTFFTNGIVE----PDA----DQHALLAARGVRVET-TRIREIAG--HA---DVV  206 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHGGGTS-EEEEECTTTCC----CCH----HHHHHHHHTTCEEEC-SCEEEEET--TE---EEE
T ss_pred             CEEEEEecCccHHHHHHHhhhcC-cEEEEECCCCC----CCH----HHHHHHHHCCcEEEc-ceeeeeec--CC---eEE
Confidence            99999999999999999999999 99999887652    333    456778899999996 89999975  33   688


Q ss_pred             eCCCcEEECCEEEEcccCccChhhhhc-ccccC---CC-cEEeCCCCCCCCCCeEEcCccccccccccCcccccccHHHH
Q 013952          243 LKDGRTLEADIVVVGVGGRPLISLFKG-QVAEN---KG-GIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHA  317 (433)
Q Consensus       243 ~~~g~~i~~d~vi~a~G~~p~~~~~~~-~~~~~---~g-~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A  317 (433)
                      +.+|+++++|.|++++|++|+.++++. ++..+   .| ++.||++++|+.|+|||+|||+..+          +.+..|
T Consensus       207 ~~~g~~~~~D~vi~a~G~~p~~~~~~~~g~~~~~~~~G~~i~vd~~~~t~~~~vya~GD~~~~~----------~~~~~A  276 (297)
T 3fbs_A          207 LADGRSIALAGLFTQPKLRITVDWIEKLGCAVEEGPMGSTIVTDPMKQTTARGIFACGDVARPA----------GSVALA  276 (297)
T ss_dssp             ETTSCEEEESEEEECCEEECCCSCHHHHTCCEEEETTEEEECCCTTCBCSSTTEEECSGGGCTT----------CCHHHH
T ss_pred             eCCCCEEEEEEEEEccCcccCchhHHhcCCccccCCCCceEEeCCCCccCCCCEEEEeecCCch----------HHHHHH
Confidence            899999999999999999999887643 45543   35 7999999999999999999999864          678899


Q ss_pred             HHHHHHHHHHHhccCC
Q 013952          318 RKSAEQAVKTIMATEG  333 (433)
Q Consensus       318 ~~~g~~aa~~i~~~~~  333 (433)
                      ..+|+.||.+|.....
T Consensus       277 ~~~g~~aa~~i~~~l~  292 (297)
T 3fbs_A          277 VGDGAMAGAAAHRSIL  292 (297)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHh
Confidence            9999999999987543

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=100.00  E-value=7.7e-37  Score=294.53  Aligned_cols=291  Identities=22%  Similarity=0.268  Sum_probs=227.5

Q ss_pred             CeEEEECCCHHHHHHHHHHHH---cCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHH
Q 013952            6 FKYVILGGGVSAGYAAREFAK---QGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK   82 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~---~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (433)
                      +||+|||||++|+++|.+|++   .|.+   |+|||++...+.++.......   ....        .......+.+.+.
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~---V~vie~~~~~~~~~~~~~~~~---~~~~--------~~~~~~~~~~~~~   67 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKAD---VKVINKSRFSYFRPALPHVAI---GVRD--------VDELKVDLSEALP   67 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGSE---EEEEESSSEEEECCSSCCCCS---SCCC--------CCCEEEEHHHHTG
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCe---EEEEeCCCCceeccchhhccc---CCcC--------HHHHHHHHHHHHh
Confidence            489999999999999999999   6766   999999922222222211000   0000        1111234566677


Q ss_pred             hCCcEEEeCceEEEEECCCCEEEeCCCcE----EecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHH
Q 013952           83 EKGIELILSTEIVRADIASKTLLSATGLI----FKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIK  158 (433)
Q Consensus        83 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~----~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~  158 (433)
                      +.+++++.+ .|..++++.+.|.+.++..    +.||+||+|||+.|..|+   ++|.+. ..++..+..++..+.+.+.
T Consensus        68 ~~gv~~~~~-~v~~i~~~~~~V~~~~g~~~~~~~~~d~lViAtG~~~~~~~---ipG~~~-~~~~~~~~~~~~~~~~~l~  142 (409)
T 3h8l_A           68 EKGIQFQEG-TVEKIDAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLATEL---VKGWDK-YGYSVCEPEFATKLREKLE  142 (409)
T ss_dssp             GGTCEEEEC-EEEEEETTTTEEEEECTTSCEEEEECSEEEECCCCEECGGG---SBTHHH-HCEESSSTTHHHHHHHHHH
T ss_pred             hCCeEEEEe-eEEEEeCCCCEEEEccCCcccceeeCCEEEECCCCCcCccC---CCChhh-cCcCcCCHHHHHHHHHHHH
Confidence            889999987 9999999999998877753    999999999999988776   466442 4566778888888888887


Q ss_pred             hcCCCcEEEECCCH-------------------------HHHHHH----HHHHhCCC----eEEEEccCCccCCCCCCHH
Q 013952          159 AKKNGKAVVVGGGY-------------------------IGLELS----AALKINNI----DVSMVYPEPWCMPRLFTAD  205 (433)
Q Consensus       159 ~~~~~~v~ViG~G~-------------------------~g~e~a----~~l~~~g~----~V~li~~~~~~~~~~~~~~  205 (433)
                      ... ++++|||+|+                         .++|+|    ..+.+.|.    +|+++++.+ .++. ++++
T Consensus       143 ~~~-~~~vViG~G~f~~~~~~~~~~p~~~~p~~~~~~~~~~~e~a~~~~~~l~~~g~~~~~~v~~~~~~~-~l~~-~~~~  219 (409)
T 3h8l_A          143 SFQ-GGNIAIGSGPFYQGHNPKPKVPENFVPNADSACEGPVFEMSLMLHGYFKKKGMLDKVHVTVFSPGE-YLSD-LSPN  219 (409)
T ss_dssp             HCC-SEEEEEEECCBCCCCSSCCBSCTTSSCCCSCSSCHHHHHHHHHHHHHHHTTTCTTTEEEEEECSSS-SSTT-BCHH
T ss_pred             Hhc-CCeEEEEecccccCCCccccccccccCCCCcccCCHHHHHHHHHHHHHHHcCCCCCeEEEEEeCCc-cccc-cCHH
Confidence            654 5667899992                         466666    55667774    899999988 5554 7899


Q ss_pred             HHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhhhc--ccccCCCcEEeCCC
Q 013952          206 IAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG--QVAENKGGIETDDF  283 (433)
Q Consensus       206 ~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~--~~~~~~g~i~vd~~  283 (433)
                      +.+.+.+.+++.||+++++++|++++.  +    .+.+.+|+++++|.+|+++|++|+..+...  ++..++|++.||++
T Consensus       220 ~~~~~~~~l~~~gV~~~~~~~v~~i~~--~----~v~~~~g~~~~~D~vi~a~G~~~~~~l~~~~~~l~~~~G~i~vd~~  293 (409)
T 3h8l_A          220 SRKAVASIYNQLGIKLVHNFKIKEIRE--H----EIVDEKGNTIPADITILLPPYTGNPALKNSTPDLVDDGGFIPTDLN  293 (409)
T ss_dssp             HHHHHHHHHHHHTCEEECSCCEEEECS--S----EEEETTSCEEECSEEEEECCEECCHHHHTSCGGGSCTTSCBCBBTT
T ss_pred             HHHHHHHHHHHCCCEEEcCCceEEECC--C----eEEECCCCEEeeeEEEECCCCCccHHHHhccccCcCCCCCEEeCcc
Confidence            999999999999999999999999975  2    378889999999999999999999755555  44446788999999


Q ss_pred             CCC-CCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccC
Q 013952          284 FKT-SADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE  332 (433)
Q Consensus       284 ~~t-~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~  332 (433)
                      +|| +.|||||+|||+..+.+        +.+..|..||+++|+||.+..
T Consensus       294 ~~~~~~~~vfa~GD~~~~~~~--------~~~~~A~~q~~~aa~~i~~~l  335 (409)
T 3h8l_A          294 MVSIKYDNVYAVGDANSMTVP--------KLGYLAVMTGRIAAQHLANRL  335 (409)
T ss_dssp             SBBSSCTTEEECGGGBTTCCS--------CCHHHHHHHHHHHHHHHHHHT
T ss_pred             cccCCCCCEEEeehhccCCCC--------cHHHHHHHHHHHHHHHHHHHh
Confidence            999 99999999999986544        678889999999999999876

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=100.00  E-value=6e-37  Score=302.93  Aligned_cols=292  Identities=20%  Similarity=0.249  Sum_probs=217.0

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHH
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK   82 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (433)
                      ..+||+|||||+||+++|.+|++.|++   |+|+|+. ...+         .......+++......+......+...++
T Consensus       211 ~~~dVvIIGgG~AGl~aA~~la~~G~~---v~lie~~~GG~~---------~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  278 (521)
T 1hyu_A          211 DAYDVLIVGSGPAGAAAAVYSARKGIR---TGLMGERFGGQV---------LDTVDIENYISVPKTEGQKLAGALKAHVS  278 (521)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSTTGGG---------TTCSCBCCBTTBSSBCHHHHHHHHHHHHH
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCCCe---EEEEECCCCCcc---------cccccccccCCCCCCCHHHHHHHHHHHHH
Confidence            368999999999999999999999987   9999876 1111         10000111111111000111123445566


Q ss_pred             hCCcEEEeCceEEEEECC-----CCEEEeCCCcEEecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHH
Q 013952           83 EKGIELILSTEIVRADIA-----SKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAI  157 (433)
Q Consensus        83 ~~~v~~~~~~~v~~i~~~-----~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~  157 (433)
                      +.+++++.++.|..++++     ...|.+.++.++.||++|+|||+.|+.|+.++........++++......       
T Consensus       279 ~~gv~v~~~~~v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~~~~~ipG~~~~~~~~v~~~~~~~~~-------  351 (521)
T 1hyu_A          279 DYDVDVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAKWRNMNVPGEDQYRTKGVTYCPHCDGP-------  351 (521)
T ss_dssp             TSCEEEECSCCEEEEECCSSTTSCEEEEETTSCEEEEEEEEECCCEEECCCCCTTTTTTTTTTEECCTTCCGG-------
T ss_pred             HcCCEEEcCCEEEEEEeccCCCceEEEEECCCCEEEcCEEEECCCCCcCCCCCCChhhhcCceEEEeecCchh-------
Confidence            789999999999999864     34677888889999999999999988777433322223456544332211       


Q ss_pred             HhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHh-cCcEEEcCCeEEEEEecCCC
Q 013952          158 KAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADG  236 (433)
Q Consensus       158 ~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~-~GV~v~~~~~v~~i~~~~~g  236 (433)
                       ...+++++|||+|++|+|+|..|++.+.+|+++++.+.+..   +    ..+.+.+++ .||++++++.++++.. +++
T Consensus       352 -~~~~k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~~---~----~~l~~~l~~~~gV~v~~~~~v~~i~~-~~~  422 (521)
T 1hyu_A          352 -LFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA---D----QVLQDKVRSLKNVDIILNAQTTEVKG-DGS  422 (521)
T ss_dssp             -GGBTSEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCCS---C----HHHHHHHTTCTTEEEECSEEEEEEEE-CSS
T ss_pred             -hcCCCeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccCc---C----HHHHHHHhcCCCcEEEeCCEEEEEEc-CCC
Confidence             12588999999999999999999999999999999887653   3    334556666 6999999999999987 345


Q ss_pred             cEEEEEeCC---Cc--EEECCEEEEcccCccChhhhhccccc-CCCcEEeCCCCCCCCCCeEEcCccccccccccCcccc
Q 013952          237 EVKEVKLKD---GR--TLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRR  310 (433)
Q Consensus       237 ~~~~v~~~~---g~--~i~~d~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~  310 (433)
                      ++..+.+.+   |+  ++++|.|++++|++||++++...+.. .+|+|.||+++||+.|+|||+|||+..+.        
T Consensus       423 ~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~l~~~~~G~I~Vd~~~~ts~p~VfA~GD~~~~~~--------  494 (521)
T 1hyu_A          423 KVVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTHWLEGALERNRMGEIIIDAKCETSVKGVFAAGDCTTVPY--------  494 (521)
T ss_dssp             SEEEEEEEETTTCCEEEEECSEEEECCCEEESCGGGTTTSCBCTTSCBCCCTTCBCSSTTEEECSTTBCCSS--------
T ss_pred             cEEEEEEEeCCCCceEEEEcCEEEECcCCCCCchHHhhhhccCCCCcEEeCCCCCCCCCCEEEeecccCCCc--------
Confidence            665666643   53  68999999999999999888765655 57899999999999999999999998753        


Q ss_pred             cccHHHHHHHHHHHHHHHhccC
Q 013952          311 VEHVDHARKSAEQAVKTIMATE  332 (433)
Q Consensus       311 ~~~~~~A~~~g~~aa~~i~~~~  332 (433)
                       +.+..|+.+|+.||.+|...+
T Consensus       495 -~~~~~A~~~g~~aa~~i~~~L  515 (521)
T 1hyu_A          495 -KQIIIATGEGAKASLSAFDYL  515 (521)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHH
T ss_pred             -ceeeehHHhHHHHHHHHHHHH
Confidence             568889999999999997643

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=100.00  E-value=4.4e-37  Score=288.41  Aligned_cols=292  Identities=18%  Similarity=0.211  Sum_probs=210.5

Q ss_pred             CCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCccccc-CCCCCCCCHhHH
Q 013952            3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCV-GSGGERLLPEWY   81 (433)
Q Consensus         3 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~   81 (433)
                      +.++||+|||||++|+++|..|++.|++   |+|+|+..       ..+.+.........+++.... .......+.+++
T Consensus        12 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~-------~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   81 (335)
T 2a87_A           12 HPVRDVIVIGSGPAGYTAALYAARAQLA---PLVFEGTS-------FGGALMTTTDVENYPGFRNGITGPELMDEMREQA   81 (335)
T ss_dssp             CCCEEEEEECCHHHHHHHHHHHHHTTCC---CEEECCSS-------CSCGGGSCSCBCCSTTCTTCBCHHHHHHHHHHHH
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCe---EEEEecCC-------CCCceeccchhhhcCCCCCCCCHHHHHHHHHHHH
Confidence            3468999999999999999999999987   99999761       011111111112222221100 001112334556


Q ss_pred             HhCCcEEEeCceEEEEECCC-CEE-EeCCCcEEecceEEEccCCCccccCCCCCCCCC---CCCEEEecCHHHHHHHHHH
Q 013952           82 KEKGIELILSTEIVRADIAS-KTL-LSATGLIFKYQILVIATGSTVLRLTDFGVEGAD---AKNIFYLREIDDADKLVEA  156 (433)
Q Consensus        82 ~~~~v~~~~~~~v~~i~~~~-~~v-~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~---~~~v~~~~~~~~~~~~~~~  156 (433)
                      .+.+++++.++ +..++..+ ..| .+.+++++.||+||+|||+.|..|+   ++|.+   ...++.+....+.      
T Consensus        82 ~~~~v~~~~~~-v~~i~~~~~~~v~~~~~g~~~~~d~lviAtG~~~~~~~---i~g~~~~~~~~~~~~~~~~~~------  151 (335)
T 2a87_A           82 LRFGADLRMED-VESVSLHGPLKSVVTADGQTHRARAVILAMGAAARYLQ---VPGEQELLGRGVSSCATCDGF------  151 (335)
T ss_dssp             HHTTCEEECCC-EEEEECSSSSEEEEETTSCEEEEEEEEECCCEEECCCC---CTHHHHTBTTTEESCHHHHGG------
T ss_pred             HHcCCEEEEee-EEEEEeCCcEEEEEeCCCCEEEeCEEEECCCCCccCCC---CCchHhccCCceEEeeccchh------
Confidence            67899999985 88888732 356 6777888999999999999888776   45432   2344433222111      


Q ss_pred             HHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCC
Q 013952          157 IKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG  236 (433)
Q Consensus       157 ~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g  236 (433)
                      +  ..+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+..   .+.+.   .+.+++.||++++++++.++..  ++
T Consensus       152 ~--~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~~~---~~~~~---~~~~~~~gV~v~~~~~v~~i~~--~~  221 (335)
T 2a87_A          152 F--FRDQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEFRA---SKIML---DRARNNDKIRFLTNHTVVAVDG--DT  221 (335)
T ss_dssp             G--GTTCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSCSS---CTTHH---HHHHHCTTEEEECSEEEEEEEC--SS
T ss_pred             h--cCCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcCCc---cHHHH---HHHhccCCcEEEeCceeEEEec--CC
Confidence            1  2579999999999999999999999999999999877643   22222   2445779999999999999986  33


Q ss_pred             cEEEEEeC---CC--cEEECCEEEEcccCccChhhhhccccc-CCCcEEeCCC-CCCCCCCeEEcCccccccccccCccc
Q 013952          237 EVKEVKLK---DG--RTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDF-FKTSADDVYAVGDVATFPMKLYREMR  309 (433)
Q Consensus       237 ~~~~v~~~---~g--~~i~~d~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~-~~t~~~~vfa~Gd~~~~~~~~~~~~~  309 (433)
                      .+..+.+.   +|  +++++|.||+|+|++|++++++.++.. ++|+|.||++ ++|+.|+|||+|||+..+.       
T Consensus       222 ~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~vd~~~~~t~~~~iya~GD~~~~~~-------  294 (335)
T 2a87_A          222 TVTGLRVRDTNTGAETTLPVTGVFVAIGHEPRSGLVREAIDVDPDGYVLVQGRTTSTSLPGVFAAGDLVDRTY-------  294 (335)
T ss_dssp             SCCEEEEEEETTSCCEEECCSCEEECSCEEECCTTTBTTBCBCTTSCBCCSTTSSBCSSTTEEECGGGTCCSC-------
T ss_pred             cEeEEEEEEcCCCceEEeecCEEEEccCCccChhHhhcccccCCCccEEeCCCCCccCCCCEEEeeecCCccH-------
Confidence            33345443   34  579999999999999999888766666 5789999986 6899999999999998642       


Q ss_pred             ccccHHHHHHHHHHHHHHHhccCC
Q 013952          310 RVEHVDHARKSAEQAVKTIMATEG  333 (433)
Q Consensus       310 ~~~~~~~A~~~g~~aa~~i~~~~~  333 (433)
                        ..+..|..+|+.||.+|.....
T Consensus       295 --~~~~~A~~~g~~aA~~i~~~l~  316 (335)
T 2a87_A          295 --RQAVTAAGSGCAAAIDAERWLA  316 (335)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHhHHHHHHHHHHHhh
Confidence              5678899999999999986543

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=100.00  E-value=8.7e-36  Score=282.04  Aligned_cols=299  Identities=17%  Similarity=0.259  Sum_probs=200.7

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCC---CCCCCccccccCCCCCCCCCCcccccCC-------CCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAP---YERPALSKAYLFPEGTARLPGFHVCVGS-------GGE   74 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~   74 (433)
                      ++||+|||||++|+++|.+|+++|++   |+|+|++..+   |........+..+.....++++......       ...
T Consensus         3 ~~~vvIIG~G~aGl~~A~~l~~~g~~---v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (357)
T 4a9w_A            3 SVDVVVIGGGQSGLSAGYFLRRSGLS---YVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVL   79 (357)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHSSCC---EEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCC---EEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHHH
Confidence            68999999999999999999999987   9999998211   1100000001111111112221111000       011


Q ss_pred             CCCHhHHHhCCcEEEeCceEEEEECCCCE---EEeCCCcEEecceEEEccCC--CccccCCCCCCCCCC--CCEEEecCH
Q 013952           75 RLLPEWYKEKGIELILSTEIVRADIASKT---LLSATGLIFKYQILVIATGS--TVLRLTDFGVEGADA--KNIFYLREI  147 (433)
Q Consensus        75 ~~~~~~~~~~~v~~~~~~~v~~i~~~~~~---v~~~~~~~~~~d~lvlAtG~--~~~~~~~~~~~g~~~--~~v~~~~~~  147 (433)
                      ..+.+.+++.+++++.++.|..++.+++.   |.+.++ +++||+||+|||.  .|..|+   ++|...  ...++....
T Consensus        80 ~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~~d~vV~AtG~~~~~~~~~---~~g~~~~~~~~~~~~~~  155 (357)
T 4a9w_A           80 AYLAQYEQKYALPVLRPIRVQRVSHFGERLRVVARDGR-QWLARAVISATGTWGEAYTPE---YQGLESFAGIQLHSAHY  155 (357)
T ss_dssp             HHHHHHHHHTTCCEECSCCEEEEEEETTEEEEEETTSC-EEEEEEEEECCCSGGGBCCCC---CTTGGGCCSEEEEGGGC
T ss_pred             HHHHHHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCCC-EEEeCEEEECCCCCCCCCCCC---CCCccccCCcEEEeccC
Confidence            22334456689999999999999987775   556666 8999999999995  555566   454321  123333222


Q ss_pred             HHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccC-CccCCCCC-CHHHHHHHHHHHH----------
Q 013952          148 DDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE-PWCMPRLF-TADIAAFYEGYYA----------  215 (433)
Q Consensus       148 ~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~-~~~~~~~~-~~~~~~~l~~~l~----------  215 (433)
                      .+...       ..+++++|||+|.+|+|+|..|.+.+ +|+++.+. +.+++... ...+.+.+.+.++          
T Consensus       156 ~~~~~-------~~~~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (357)
T 4a9w_A          156 STPAP-------FAGMRVAIIGGGNSGAQILAEVSTVA-ETTWITQHEPAFLADDVDGRVLFERATERWKAQQEGREPDL  227 (357)
T ss_dssp             CCSGG-------GTTSEEEEECCSHHHHHHHHHHTTTS-EEEEECSSCCCBCCTTCCTHHHHTC----------------
T ss_pred             CChhh-------cCCCEEEEECCCcCHHHHHHHHHhhC-CEEEEECCCCeecchhhcCccHHHHHHHHHhccccccCCCc
Confidence            22111       15789999999999999999999998 69999887 45555422 3444433333332          


Q ss_pred             ------------------hcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhhhc-ccccCCC
Q 013952          216 ------------------NKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAENKG  276 (433)
Q Consensus       216 ------------------~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~-~~~~~~g  276 (433)
                                        +.|+ +.....+.++..      ..+.+.+|+++++|.||+|+|++|+++++.. ++..++|
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~g~-i~~~~~v~~~~~------~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~G  300 (357)
T 4a9w_A          228 PPGGFGDIVMVPPVLDARARGV-LAAVPPPARFSP------TGMQWADGTERAFDAVIWCTGFRPALSHLKGLDLVTPQG  300 (357)
T ss_dssp             ------CBCCCHHHHHHHHTTC-CCEECCCSEEET------TEEECTTSCEEECSEEEECCCBCCCCGGGTTTTCBCTTS
T ss_pred             ccccccCcccChhHHHHHhcCc-eEEecCcceEeC------CeeEECCCCEecCCEEEECCCcCCCCcccCcccccCCCC
Confidence                              3444 445566666654      2478899999999999999999999888754 5666778


Q ss_pred             cEEeCCC--CCCCCCCeEEcC--ccccccccccCcccccccHHHHHHHHHHHHHHHhccCCC
Q 013952          277 GIETDDF--FKTSADDVYAVG--DVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGG  334 (433)
Q Consensus       277 ~i~vd~~--~~t~~~~vfa~G--d~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~  334 (433)
                      +|.||++  ++|+.|+|||+|  ||+... .        ..+..|..+|+.+|.+|...+.+
T Consensus       301 ~i~vd~~~l~~t~~~~vya~Gd~d~~~~~-~--------~~~~~A~~~g~~~a~~i~~~l~g  353 (357)
T 4a9w_A          301 QVEVDGSGLRALAVPSVWLLGYGDWNGMA-S--------ATLIGVTRYAREAVRQVTAYCAD  353 (357)
T ss_dssp             CBCBCTTSCBBSSCTTEEECSSCGGGSTT-C--------SSTTTHHHHHHHHHHHHHHHTC-
T ss_pred             CccccCCcccCCCCCCeEEeccccccccc-h--------hhhhhhHHHHHHHHHHHHHHHHh
Confidence            9999999  999999999999  555522 1        44556889999999999987654

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=100.00  E-value=7.4e-35  Score=277.10  Aligned_cols=302  Identities=14%  Similarity=0.151  Sum_probs=207.2

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCC-CCCcEEEEcCCC-C-CCCC-CCccccccCCCCCCCCCCc---c---cc------
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGV-KPGELAIISKEV-A-PYER-PALSKAYLFPEGTARLPGF---H---VC------   68 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~-~~~~V~lie~~~-~-~~~~-~~~~~~~~~~~~~~~~~~~---~---~~------   68 (433)
                      ++||+|||||++|+++|.+|++.|+ +   |+|||++. . .+.. +.. ..++.+.......++   .   ..      
T Consensus         4 ~~~vvIIGaG~aGl~aA~~l~~~g~~~---v~lie~~~~Gg~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~   79 (369)
T 3d1c_A            4 HHKVAIIGAGAAGIGMAITLKDFGITD---VIILEKGTVGHSFKHWPKS-TRTITPSFTSNGFGMPDMNAISMDTSPAFT   79 (369)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCC---EEEECSSSTTHHHHTSCTT-CBCSSCCCCCGGGTCCCTTCSSTTCCHHHH
T ss_pred             cCcEEEECcCHHHHHHHHHHHHcCCCc---EEEEecCCCCCccccCccc-ccccCcchhcccCCchhhhhcccccccccc
Confidence            6899999999999999999999987 5   99999982 0 0000 000 000000000000000   0   00      


Q ss_pred             cCCC------CCCCCHhHHHhCCcEEEeCceEEEEECCC--CEEEeCCCcEEecceEEEccCCCccccCCCCCCCCCCCC
Q 013952           69 VGSG------GERLLPEWYKEKGIELILSTEIVRADIAS--KTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKN  140 (433)
Q Consensus        69 ~~~~------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~--~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~  140 (433)
                      ....      ....+...+++.+++++.++.|..+++++  ..|.+.++ ++.||+||+|||+.+. |.   +|+   ..
T Consensus        80 ~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~~d~vVlAtG~~~~-p~---ip~---~~  151 (369)
T 3d1c_A           80 FNEEHISGETYAEYLQVVANHYELNIFENTVVTNISADDAYYTIATTTE-TYHADYIFVATGDYNF-PK---KPF---KY  151 (369)
T ss_dssp             HCCSSCBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC-CEEEEEEEECCCSTTS-BC---CCS---SS
T ss_pred             ccccCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEEEEeCCC-EEEeCEEEECCCCCCc-cC---CCC---Cc
Confidence            0000      00112334466899999998999998764  35666665 6999999999999765 43   444   23


Q ss_pred             EEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCC------CCCHHHHHHHHHHH
Q 013952          141 IFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR------LFTADIAAFYEGYY  214 (433)
Q Consensus       141 v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~------~~~~~~~~~l~~~l  214 (433)
                      +++...+.+..       ..++++++|||+|.+|+|+|..|.+.|.+|+++++.+.+++.      .+++.+.+.+.+.+
T Consensus       152 ~~~~~~~~~~~-------~~~~~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~~~~~d~~~~~~~~~~~~l~~~l  224 (369)
T 3d1c_A          152 GIHYSEIEDFD-------NFNKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPYTRQRLGNVI  224 (369)
T ss_dssp             CEEGGGCSCGG-------GSCSSEEEEECCSHHHHHHHHHHHHTTCEEEEECC----------CTTSCCHHHHHHHHHHH
T ss_pred             eechhhcCChh-------hcCCCEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCCCCCCCCCccCCHHHHHHHHHHH
Confidence            44443332221       225679999999999999999999999999999998876632      14577888999999


Q ss_pred             HhcC-cEEEcCCeEEEEEecCCCcEEEEEeCCCcEEE-CCEEEEcccCccChhhhhc-ccccCCCcEEeCCC-CCCCCCC
Q 013952          215 ANKG-IKIIKGTVAVGFTTNADGEVKEVKLKDGRTLE-ADIVVVGVGGRPLISLFKG-QVAENKGGIETDDF-FKTSADD  290 (433)
Q Consensus       215 ~~~G-V~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~-~d~vi~a~G~~p~~~~~~~-~~~~~~g~i~vd~~-~~t~~~~  290 (433)
                      ++.| |++++++.|.++..+ + ....+.+.+|+++. +|.+|+|+|++|+.+++.. .+..++|++.||++ ++|+.|+
T Consensus       225 ~~~g~v~~~~~~~v~~i~~~-~-~~~~v~~~~g~~~~~~d~vi~a~G~~~~~~~~~~~~~~~~~g~i~v~~~~~~t~~~~  302 (369)
T 3d1c_A          225 KQGARIEMNVHYTVKDIDFN-N-GQYHISFDSGQSVHTPHEPILATGFDATKNPIVQQLFVTTNQDIKLTTHDESTRYPN  302 (369)
T ss_dssp             HTTCCEEEECSCCEEEEEEE-T-TEEEEEESSSCCEEESSCCEECCCBCGGGSHHHHHHSCCTTSCCCBCTTSBBSSSTT
T ss_pred             hhCCcEEEecCcEEEEEEec-C-CceEEEecCCeEeccCCceEEeeccCCccchhhhhhccCCCCCEEechhhcccCCCC
Confidence            9997 999999999999752 2 23567888887665 6999999999999965543 44445677999986 7789999


Q ss_pred             eEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCC
Q 013952          291 VYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEG  333 (433)
Q Consensus       291 vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~  333 (433)
                      |||+|||+..+....      ..+..+..||+.+|++|.+...
T Consensus       303 v~a~GD~~~~~~~~~------~~~~~~~~~a~~~a~~l~~~~~  339 (369)
T 3d1c_A          303 IFMIGATVENDNAKL------CYIYKFRARFAVLAHLLTQREG  339 (369)
T ss_dssp             EEECSTTCCCSSCCC------CSHHHHGGGHHHHHHHHHHHTT
T ss_pred             eEEeccccccCCeeE------EEEehhhHHHHHHHHHHhcccC
Confidence            999999998765422      3455677889999999987653

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=100.00  E-value=2.3e-34  Score=278.72  Aligned_cols=286  Identities=20%  Similarity=0.237  Sum_probs=201.9

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      .+||+|||||+||+++|..|++.|++   |+|+|+...      +.+.+.+     .+|.+...  ........+++++.
T Consensus       122 ~~~V~IIGgGpAGl~aA~~L~~~G~~---V~v~e~~~~------~GG~l~~-----gip~~~~~--~~~~~~~~~~l~~~  185 (456)
T 2vdc_G          122 GLSVGVIGAGPAGLAAAEELRAKGYE---VHVYDRYDR------MGGLLVY-----GIPGFKLE--KSVVERRVKLLADA  185 (456)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHHTCC---EEEECSSSS------CSTHHHH-----TSCTTTSC--HHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCe---EEEEeccCC------CCCeeee-----cCCCccCC--HHHHHHHHHHHHHC
Confidence            57999999999999999999999987   999999811      1111111     12222110  00112334667788


Q ss_pred             CcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCC-ccccCCCCCCCCCCCCEEEecCHHHHHHHHHH-------
Q 013952           85 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST-VLRLTDFGVEGADAKNIFYLREIDDADKLVEA-------  156 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~-~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~-------  156 (433)
                      +++++.++.+.      +.+.+++. .+.||+||+|||+. |+.++   ++|.+..++++..++.........       
T Consensus       186 gv~~~~~~~v~------~~v~~~~~-~~~~d~vvlAtG~~~~~~~~---ipG~~~~gv~~a~~~l~~~~~~~~~~~~~~~  255 (456)
T 2vdc_G          186 GVIYHPNFEVG------RDASLPEL-RRKHVAVLVATGVYKARDIK---APGSGLGNIVAALDYLTTSNKVSLGDTVEAY  255 (456)
T ss_dssp             TCEEETTCCBT------TTBCHHHH-HSSCSEEEECCCCCEECCTT---CSCCTTTTEEEHHHHHHHHHHHHCTTTCSSC
T ss_pred             CcEEEeCCEec------cEEEhhHh-HhhCCEEEEecCCCCCCCCC---CCCCcCCCcEEHHHHHHHhhhhhcccccccc
Confidence            99999986542      22333332 36799999999996 55555   678777788864433221111100       


Q ss_pred             ---HHhcCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccCCcc-CCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEE
Q 013952          157 ---IKAKKNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWC-MPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFT  231 (433)
Q Consensus       157 ---~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~-~V~li~~~~~~-~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~  231 (433)
                         .....+++|+|||+|.+|+|+|..+.+.|. +|+++.+.+.. ++. .+.+     .+.+++.||++++++.+.++.
T Consensus       256 ~~g~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~~~~p~-~~~e-----~~~~~~~Gv~~~~~~~~~~i~  329 (456)
T 2vdc_G          256 ENGSLNAAGKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDRKNMPG-SQRE-----VAHAEEEGVEFIWQAAPEGFT  329 (456)
T ss_dssp             CTTCSCCCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCSTTCSS-CHHH-----HHHHHHTTCEEECCSSSCCEE
T ss_pred             cccccccCCCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCccCCCC-CHHH-----HHHHHHCCCEEEeCCCceEEe
Confidence               011357899999999999999999999997 59999998765 443 2332     245778899999999999887


Q ss_pred             ecCCCcEEEEEeC------------------CC--cEEECCEEEEcccCccChh--hhh-ccccc-CCCcEEeCCC-CCC
Q 013952          232 TNADGEVKEVKLK------------------DG--RTLEADIVVVGVGGRPLIS--LFK-GQVAE-NKGGIETDDF-FKT  286 (433)
Q Consensus       232 ~~~~g~~~~v~~~------------------~g--~~i~~d~vi~a~G~~p~~~--~~~-~~~~~-~~g~i~vd~~-~~t  286 (433)
                      .  ++++..+++.                  +|  .++++|.||+|+|++|+..  ++. .++.. .+|+|.||++ +||
T Consensus       330 ~--~g~v~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~aD~Vi~A~G~~p~~~~~~l~~~gl~~~~~G~i~vd~~~~~T  407 (456)
T 2vdc_G          330 G--DTVVTGVRAVRIHLGVADATGRQTPQVIEGSEFTVQADLVIKALGFEPEDLPNAFDEPELKVTRWGTLLVDHRTKMT  407 (456)
T ss_dssp             E--EEEEETTEEEEEEEEEEEECTTCCEEEEEEEEEEEECSEEEECSCEECCCHHHHHHSTTSCBCTTSSBCCCTTTCBC
T ss_pred             C--CCcEEEEEEEEEEecccCCcCCccccccCCcEEEEECCEEEECCCCCCCcchhhcccCCeeECCCCCEEECCCCCcC
Confidence            5  4433222211                  22  4699999999999999875  443 45666 5789999998 999


Q ss_pred             CCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCC
Q 013952          287 SADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGG  334 (433)
Q Consensus       287 ~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~  334 (433)
                      +.|+|||+|||+..+          .++..|+.+|+.||.+|...+.+
T Consensus       408 s~~~VfA~GD~~~g~----------~~v~~A~~~G~~aA~~i~~~L~~  445 (456)
T 2vdc_G          408 NMDGVFAAGDIVRGA----------SLVVWAIRDGRDAAEGIHAYAKA  445 (456)
T ss_dssp             SSTTEEECGGGGSSC----------CSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEeccccCCc----------hHHHHHHHHHHHHHHHHHHHhhc
Confidence            999999999999765          56888999999999999876543

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=100.00  E-value=2.1e-33  Score=297.12  Aligned_cols=315  Identities=18%  Similarity=0.219  Sum_probs=217.0

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      .+||+|||||+||++||.+|++.|++  +|+|+|+...      +.+.+.     ..+|.+...  ........+++++.
T Consensus       187 ~~~VvVIGgGpAGl~aA~~L~~~G~~--~Vtv~E~~~~------~GG~~~-----~~ip~~~~~--~~~~~~~~~~~~~~  251 (1025)
T 1gte_A          187 SAKIALLGAGPASISCASFLARLGYS--DITIFEKQEY------VGGLST-----SEIPQFRLP--YDVVNFEIELMKDL  251 (1025)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCC--CEEEEESSSS------CSTHHH-----HTSCTTTSC--HHHHHHHHHHHHTT
T ss_pred             CCEEEEECccHHHHHHHHHHHhcCCC--cEEEEeCCCC------CCcccc-----ccCCcccCC--HHHHHHHHHHHHHC
Confidence            57999999999999999999999982  3999999811      111111     111221110  00011224567788


Q ss_pred             CcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCC-CccccCCCCCCCCC-CCCEEEecCHHHHHHHHHHHH----
Q 013952           85 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGS-TVLRLTDFGVEGAD-AKNIFYLREIDDADKLVEAIK----  158 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~-~~~~~~~~~~~g~~-~~~v~~~~~~~~~~~~~~~~~----  158 (433)
                      |++++.++.+.     .+.+.+.++.++.||+||||||+ .|+.++.  ++|.+ ..++++..++...  +....+    
T Consensus       252 gv~~~~~~~v~-----~~~v~~~~~~~~~~d~vvlAtGa~~p~~l~~--~~G~~~~~gv~~a~~~L~~--~~~~~~~~~~  322 (1025)
T 1gte_A          252 GVKIICGKSLS-----ENEITLNTLKEEGYKAAFIGIGLPEPKTDDI--FQGLTQDQGFYTSKDFLPL--VAKSSKAGMC  322 (1025)
T ss_dssp             TCEEEESCCBS-----TTSBCHHHHHHTTCCEEEECCCCCEECCCGG--GTTCCTTTTEEEHHHHHHH--HHHHHCBTTB
T ss_pred             CcEEEcccEec-----cceEEhhhcCccCCCEEEEecCCCCCCCCCC--CCCCCCCCCEEEhHHHHHH--HHhhcccccc
Confidence            99999986652     23455555556789999999999 5876653  23432 3567764432211  111100    


Q ss_pred             ------hcCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccCCc-cCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEE
Q 013952          159 ------AKKNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPW-CMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGF  230 (433)
Q Consensus       159 ------~~~~~~v~ViG~G~~g~e~a~~l~~~g~-~V~li~~~~~-~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i  230 (433)
                            ...+++|+|||+|.+|+|+|..+.+.|. +|+++++.+. .++. ++.++     +.+++.||++++++.+.++
T Consensus       323 ~~~~~~~~~~~~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~~~~~~~-~~~e~-----~~~~~~Gv~~~~~~~~~~i  396 (1025)
T 1gte_A          323 ACHSPLPSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRA-VPEEV-----ELAKEEKCEFLPFLSPRKV  396 (1025)
T ss_dssp             SCCCCCCCCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGGGCCS-CHHHH-----HHHHHTTCEEECSEEEEEE
T ss_pred             cccccccccCCcEEEECCChHHHHHHHHHHHcCCCEEEEEEecChhhCCC-CHHHH-----HHHHHcCCEEEeCCCceEE
Confidence                  1135799999999999999999999996 8999999873 4443 44443     4567889999999999999


Q ss_pred             EecCCCcEEEEEeC------CC---------cEEECCEEEEcccCccC-hhhhhc--cccc-CCCcEEeCC-CCCCCCCC
Q 013952          231 TTNADGEVKEVKLK------DG---------RTLEADIVVVGVGGRPL-ISLFKG--QVAE-NKGGIETDD-FFKTSADD  290 (433)
Q Consensus       231 ~~~~~g~~~~v~~~------~g---------~~i~~d~vi~a~G~~p~-~~~~~~--~~~~-~~g~i~vd~-~~~t~~~~  290 (433)
                      .. +++++..+++.      +|         .++++|.||+|+|++|+ ..++..  ++.. .+|+|.||+ ++||+.|+
T Consensus       397 ~~-~~g~v~~v~~~~~~~~~~g~~~~~~g~~~~i~aD~Vi~A~G~~~~~~~l~~~~~gl~~~~~G~I~vd~~~~~Ts~~~  475 (1025)
T 1gte_A          397 IV-KGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPW  475 (1025)
T ss_dssp             EE-ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEECSEEEECSCEECCCHHHHHHTTTSCBCTTSSBCCCTTTCBCSSTT
T ss_pred             Ec-cCCeEEEEEEEEeEEcCCCCcccCCCceEEEECCEEEECCCCCCCchhhhhcccCceECCCCCEEECCCCCccCCCC
Confidence            76 45666556542      22         36899999999999864 555543  5666 478899997 89999999


Q ss_pred             eEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCC---CCCccCCCCCCeEEE--eecccceEEecC
Q 013952          291 VYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEG---GKTVTGYDYLPYFYS--RAFDLSWQFYGD  360 (433)
Q Consensus       291 vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~---~~~~~~~~~~p~~~~--~~~~~~~~~~g~  360 (433)
                      |||+|||+..+          .++..|..+|+.||.+|.+.+.   +.....+..+|++|+  ...+++....|.
T Consensus       476 VfA~GD~~~~~----------~~~~~A~~~G~~aA~~i~~~L~~~~~~~~~~~~~~p~~~~ev~~v~ls~~~~G~  540 (1025)
T 1gte_A          476 VFAGGDIVGMA----------NTTVESVNDGKQASWYIHKYIQAQYGASVSAKPELPLFYTPVDLVDISVEMAGL  540 (1025)
T ss_dssp             EEECSGGGCSC----------CCHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCCBCCCCCGGGGCCCCEEETTE
T ss_pred             EEEeCCCCCCc----------hHHHHHHHHHHHHHHHHHHHHHhccCCCcccCcCccccccccccccceeeeccc
Confidence            99999999865          4577899999999999986432   222235567888887  345555555553

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=100.00  E-value=4.9e-33  Score=270.13  Aligned_cols=293  Identities=14%  Similarity=0.157  Sum_probs=201.9

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      .+||+|||||++|+++|..|++.|. ..+|+|||+...++.       .+....   .|.+..  .......+.+++++.
T Consensus         6 ~~~vvIIG~G~aGl~aA~~l~~~g~-~~~V~vie~~~~~gg-------~~~~g~---~p~~~~--~~~~~~~~~~~~~~~   72 (460)
T 1cjc_A            6 TPQICVVGSGPAGFYTAQHLLKHHS-RAHVDIYEKQLVPFG-------LVRFGV---APDHPE--VKNVINTFTQTARSD   72 (460)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCS-SCEEEEECSSSSSCT-------HHHHTS---CTTCGG--GGGHHHHHHHHHTST
T ss_pred             CceEEEECcCHHHHHHHHHHHhcCC-CCCEEEEeCCCcCCc-------eeeccc---CCCCcc--HHHHHHHHHHHHHhC
Confidence            5799999999999999999999881 244999999832331       111000   011110  000112234556678


Q ss_pred             CcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCc-cccCCCCCCCCCCCCEEEecCHHHHHHHH-H--HHH-h
Q 013952           85 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTV-LRLTDFGVEGADAKNIFYLREIDDADKLV-E--AIK-A  159 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~-~~~~~~~~~g~~~~~v~~~~~~~~~~~~~-~--~~~-~  159 (433)
                      +++++.++.+      .+.|.+.+ .++.||+||+|||+.+ +.|+   +||.+.++++++.++....... +  .+. .
T Consensus        73 gv~~~~~~~v------~~~V~~~~-~~~~~d~lVlAtGs~~~~~~~---ipG~~~~gv~~~~~~~~~~~~~~d~~~~~~~  142 (460)
T 1cjc_A           73 RCAFYGNVEV------GRDVTVQE-LQDAYHAVVLSYGAEDHQALD---IPGEELPGVFSARAFVGWYNGLPENRELAPD  142 (460)
T ss_dssp             TEEEEBSCCB------TTTBCHHH-HHHHSSEEEECCCCCEECCCC---CTTTTSTTEEEHHHHHHHHTTCGGGTTCCCC
T ss_pred             CcEEEeeeEE------eeEEEecc-ceEEcCEEEEecCcCCCCCCC---CCCCCCCcEEEHHHHHHHhhcCccccccccC
Confidence            9999988655      23344433 3478999999999985 5565   6777767888765442111000 0  000 1


Q ss_pred             cCCCcEEEECCCHHHHHHHHHHH--------------------hCCC-eEEEEccCCccCCCC-----------------
Q 013952          160 KKNGKAVVVGGGYIGLELSAALK--------------------INNI-DVSMVYPEPWCMPRL-----------------  201 (433)
Q Consensus       160 ~~~~~v~ViG~G~~g~e~a~~l~--------------------~~g~-~V~li~~~~~~~~~~-----------------  201 (433)
                      ..+++++|||+|++|+|+|..|.                    +.+. +|+++.+.+.+...+                 
T Consensus       143 ~~~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~~~~~ft~~el~~l~~lp~~~~~  222 (460)
T 1cjc_A          143 LSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPM  222 (460)
T ss_dssp             TTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGGGCCCCHHHHHHHHTCTTEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCChHhhccCHHHHHHhhcCCCceeE
Confidence            14789999999999999999998                    5676 799999887652111                 


Q ss_pred             ---------------CCHH---HHHHHHHHHHh--------------cCcEEEcCCeEEEEEecCCC-cEEEEEeC----
Q 013952          202 ---------------FTAD---IAAFYEGYYAN--------------KGIKIIKGTVAVGFTTNADG-EVKEVKLK----  244 (433)
Q Consensus       202 ---------------~~~~---~~~~l~~~l~~--------------~GV~v~~~~~v~~i~~~~~g-~~~~v~~~----  244 (433)
                                     .+..   +.+.+.+.+++              .||++++++.+.+|..++++ ++..|++.    
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~v~~v~~~~~~l  302 (460)
T 1cjc_A          223 LDPADFLGLQDRIKEAARPRKRLMELLLRTATEKPGVEEAARRASASRAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRL  302 (460)
T ss_dssp             CCGGGGTTHHHHTTTSCHHHHHHHHHHHHHHHSCCCHHHHHHHHTCSEEEEEECSEEEEEEEECTTSSSEEEEEEEEEEE
T ss_pred             echhhhcchhhhhhhccHHHHHHHHHHHHHHHhccccccccCCCCCCceEEEECCCChheEEcCCCCceEEEEEEEEEEE
Confidence                           0110   23344455555              89999999999999873325 66555543    


Q ss_pred             -----------CC--cEEECCEEEEcccCccChhhhhccc-cc-CCCcEEeCCCCCCC-CCCeEEcCccccccccccCcc
Q 013952          245 -----------DG--RTLEADIVVVGVGGRPLISLFKGQV-AE-NKGGIETDDFFKTS-ADDVYAVGDVATFPMKLYREM  308 (433)
Q Consensus       245 -----------~g--~~i~~d~vi~a~G~~p~~~~~~~~~-~~-~~g~i~vd~~~~t~-~~~vfa~Gd~~~~~~~~~~~~  308 (433)
                                 +|  ++++||.||+++|++|+. +  .++ .. ++++|.+|+++||+ .|+|||+|||+..+.      
T Consensus       303 ~~~~~~~~~~~~g~~~~i~~d~Vi~a~G~~p~~-l--~gl~~~d~~g~i~vn~~~rt~~~p~vya~Gd~~~g~~------  373 (460)
T 1cjc_A          303 EGIGEATRAVPTGDVEDLPCGLVLSSIGYKSRP-I--DPSVPFDPKLGVVPNMEGRVVDVPGLYCSGWVKRGPT------  373 (460)
T ss_dssp             ESSGGGCEEEEEEEEEEEECSEEEECCCEECCC-C--CTTSCCBTTTTBCCEETTEETTCTTEEECTHHHHCTT------
T ss_pred             ccccCCCcccCCCceEEEEcCEEEECCCCCCCC-C--CCCcccccCCCeeECCCCcCcCCCCEEEEEeCCcCCC------
Confidence                       34  579999999999999998 3  456 55 56889999999998 799999999997653      


Q ss_pred             cccccHHHHHHHHHHHHHHHhccC
Q 013952          309 RRVEHVDHARKSAEQAVKTIMATE  332 (433)
Q Consensus       309 ~~~~~~~~A~~~g~~aa~~i~~~~  332 (433)
                         ..+..|..+|+.+|.+|.+..
T Consensus       374 ---~~i~~a~~~g~~aa~~i~~~l  394 (460)
T 1cjc_A          374 ---GVITTTMTDSFLTGQILLQDL  394 (460)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHHH
T ss_pred             ---ccHHHHHHHHHHHHHHHHHHH
Confidence               346678999999999998764

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=100.00  E-value=1.6e-32  Score=288.39  Aligned_cols=285  Identities=16%  Similarity=0.223  Sum_probs=207.1

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHh-
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE-   83 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   83 (433)
                      .+||+|||||+||++||.+|++.|++   |+|||++..+.      +.+... ....+++...   ........+.+.+ 
T Consensus       128 ~~dVvVIGaGpAGl~AA~~la~~G~~---V~lie~~~~~G------G~~~~~-~k~~i~~~~~---~~~~~~~~~~l~~~  194 (965)
T 2gag_A          128 HTDVLVVGAGPAGLAAAREASRSGAR---VMLLDERAEAG------GTLLDT-AGEQIDGMDS---SAWIEQVTSELAEA  194 (965)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSSS------GGGGGS-SCCEETTEEH---HHHHHHHHHHHHHS
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCc---EEEEeCCCCCC------ceeccC-CccccCCCCH---HHHHHHHHHHHhhc
Confidence            57999999999999999999999987   99999982111      111100 0001111100   0001112233444 


Q ss_pred             CCcEEEeCceEEEEECCCCEEEe-----------------CCCcEEecceEEEccCCCccccCCCCCCCCCCCCEEEecC
Q 013952           84 KGIELILSTEIVRADIASKTLLS-----------------ATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLRE  146 (433)
Q Consensus        84 ~~v~~~~~~~v~~i~~~~~~v~~-----------------~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~  146 (433)
                      .+++++.++.|..++..+.....                 .++.++.||+||||||+.|+.|+   +||.+.+++++..+
T Consensus       195 ~~v~~~~~~~V~~i~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs~p~~~~---ipG~~~~gv~~~~~  271 (965)
T 2gag_A          195 EETTHLQRTTVFGSYDANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGAHERPIV---FENNDRPGIMLAGA  271 (965)
T ss_dssp             TTEEEESSEEEEEEETTTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCEEECCCC---CBTCCSTTEEEHHH
T ss_pred             CCcEEEeCCEEEeeecCCceeeeEeecccccccccccCCCCceEEEECCEEEECCCCccCCCC---CCCCCCCCEEEhHH
Confidence            48999999899988865432111                 11236899999999999988777   67877788887554


Q ss_pred             HHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCe
Q 013952          147 IDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTV  226 (433)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~  226 (433)
                      ..+   +.+.....++++++|||+|++|+|+|..|.+.|.+|+++++.+.+++     .     .+.+++.||++++++.
T Consensus       272 ~~~---~l~~~~~~~gk~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~~-----~-----~~~l~~~GV~v~~~~~  338 (965)
T 2gag_A          272 VRS---YLNRYGVRAGARIAVATTNDSAYELVRELAATGGVVAVIDARSSISA-----A-----AAQAVADGVQVISGSV  338 (965)
T ss_dssp             HHH---HHHTTCEESCSSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCCH-----H-----HHHHHHTTCCEEETEE
T ss_pred             HHH---HHHhcCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccch-----h-----HHHHHhCCeEEEeCCE
Confidence            322   22211222568999999999999999999999999999998876542     2     4567899999999999


Q ss_pred             EEEEEecCCCcEEEEEeCC-------C--cEEECCEEEEcccCccChhhhhcccccCCCcEEeCCCCC-----CCCCCeE
Q 013952          227 AVGFTTNADGEVKEVKLKD-------G--RTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFK-----TSADDVY  292 (433)
Q Consensus       227 v~~i~~~~~g~~~~v~~~~-------g--~~i~~d~vi~a~G~~p~~~~~~~~~~~~~g~i~vd~~~~-----t~~~~vf  292 (433)
                      +.++..++++++..|.+.+       |  +++++|.|++++|++|++.++..    ..++|.+|++++     |+.|+||
T Consensus       339 v~~i~~~~~~~v~~v~~~~~~~~~~~G~~~~i~~D~Vv~a~G~~P~~~l~~~----~~g~i~vd~~~~~~v~~ts~p~Iy  414 (965)
T 2gag_A          339 VVDTEADENGELSAIVVAELDEARELGGTQRFEADVLAVAGGFNPVVHLHSQ----RQGKLDWDTTIHAFVPADAVANQH  414 (965)
T ss_dssp             EEEEEECTTSCEEEEEEEEECTTCCEEEEEEEECSEEEEECCEEECCHHHHH----TTCCEEEETTTTEEEECSCCTTEE
T ss_pred             eEEEeccCCCCEEEEEEEeccccCCCCceEEEEcCEEEECCCcCcChHHHHh----CCCcEEEcCcccccccCCCCCCEE
Confidence            9999863245555666654       4  67999999999999999987743    257899999987     8999999


Q ss_pred             EcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCC
Q 013952          293 AVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEG  333 (433)
Q Consensus       293 a~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~  333 (433)
                      |+|||++.+.           +..|..||+.||.+|.+...
T Consensus       415 AaGD~a~~~~-----------l~~A~~~G~~aA~~i~~~lg  444 (965)
T 2gag_A          415 LAGAMTGRLD-----------TASALSTGAATGAAAATAAG  444 (965)
T ss_dssp             ECGGGGTCCS-----------HHHHHHHHHHHHHHHHHHTT
T ss_pred             EEEecCCchh-----------HHHHHHHHHHHHHHHHHHcC
Confidence            9999998642           34789999999999987543

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=100.00  E-value=1.9e-33  Score=272.78  Aligned_cols=289  Identities=17%  Similarity=0.207  Sum_probs=199.0

Q ss_pred             cCeEEEECCCHHHHHHHHHHHH-c------CCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAK-Q------GVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLL   77 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~-~------g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (433)
                      .+||+|||||+||++||..|++ .      +.+   |+|||+...++..+  ..+.        .|....  .......+
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~---V~lie~~~~~gg~~--~~gv--------~p~~~~--~~~~~~~~   67 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMA---VDMLEMLPTPWGLV--RSGV--------APDHPK--IKSISKQF   67 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEE---EEEEESSSSCSTHH--HHTS--------CTTCTG--GGGGHHHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCCCe---EEEEecCCCCCCcc--cccc--------CCCCCC--HHHHHHHH
Confidence            6899999999999999999999 7      665   99999983333211  0000        011100  00111234


Q ss_pred             HhHHHhCCcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCC-ccccCCCCCCCCCCCCEEEecCHHHHHHH-H-
Q 013952           78 PEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST-VLRLTDFGVEGADAKNIFYLREIDDADKL-V-  154 (433)
Q Consensus        78 ~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~-~~~~~~~~~~g~~~~~v~~~~~~~~~~~~-~-  154 (433)
                      .+++++.+++++.+..+      ++.|.+.++ ++.||+||+|||+. ++.++   +||.+..++++..++.....- . 
T Consensus        68 ~~~~~~~~v~~~~~v~v------~~~v~~~~~-~~~~d~lViAtG~~~~~~~~---ipG~~~~gv~~~~~~~~~~~~~~d  137 (456)
T 1lqt_A           68 EKTAEDPRFRFFGNVVV------GEHVQPGEL-SERYDAVIYAVGAQSDRMLN---IPGEDLPGSIAAVDFVGWYNAHPH  137 (456)
T ss_dssp             HHHHTSTTEEEEESCCB------TTTBCHHHH-HHHSSEEEECCCCCEECCCC---CTTTTSTTEEEHHHHHHHHTTCGG
T ss_pred             HHHHhcCCCEEEeeEEE------CCEEEECCC-eEeCCEEEEeeCCCCCCCCC---CCCCCCCCcEEHHHHHhhhhcCcc
Confidence            45566789999887543      234555444 47999999999997 56555   677766778865543211000 0 


Q ss_pred             --HHHHhcCCCcEEEECCCHHHHHHHHHHHhC--------------------C-CeEEEEccCCccCCCCCCH-------
Q 013952          155 --EAIKAKKNGKAVVVGGGYIGLELSAALKIN--------------------N-IDVSMVYPEPWCMPRLFTA-------  204 (433)
Q Consensus       155 --~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~--------------------g-~~V~li~~~~~~~~~~~~~-------  204 (433)
                        ..+....+++++|||+|++|+|+|..|.+.                    + .+|+++.+.+.+...+.++       
T Consensus       138 ~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~~~~f~~~elrel~~  217 (456)
T 1lqt_A          138 FEQVSPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAAFTTLELRELAD  217 (456)
T ss_dssp             GTTCCCCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGGGCCCCHHHHHHGGG
T ss_pred             cccchhhcCCCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChhhhccChHHHHHhhc
Confidence              001112578999999999999999999874                    5 4999999988765432111       


Q ss_pred             -----------HH------------------HHHHHHHHHh------cCcEEEcCCeEEEEEecCCCcEEEEEeC-----
Q 013952          205 -----------DI------------------AAFYEGYYAN------KGIKIIKGTVAVGFTTNADGEVKEVKLK-----  244 (433)
Q Consensus       205 -----------~~------------------~~~l~~~l~~------~GV~v~~~~~v~~i~~~~~g~~~~v~~~-----  244 (433)
                                 ++                  .+.+.+.+++      +||++++++.+.++..  ++++..|++.     
T Consensus       218 lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~gv~i~~~~~~~~i~~--~~~v~~v~~~~~~~~  295 (456)
T 1lqt_A          218 LDGVDVVIDPAELDGITDEDAAAVGKVCKQNIKVLRGYADREPRPGHRRMVFRFLTSPIEIKG--KRKVERIVLGRNELV  295 (456)
T ss_dssp             CTTEEEECCGGGGTTCCHHHHHHHCHHHHHHHHHHHHHHTCC-CTTSEEEEEECSEEEEEEEC--SSSCCEEEEEEEEEE
T ss_pred             CCCceeeeChHHhccchhhhhhhccHHHHHHHHHHHHHhhcCCCCCCceEEEEeCCCCeEEec--CCcEeEEEEEEEEec
Confidence                       11                  2344455555      7999999999999986  4554445443     


Q ss_pred             -----------CC--cEEECCEEEEcccCccChhhhhccccc-CCCcEEeCCCCC-CCCCCeEEcCccccccccccCccc
Q 013952          245 -----------DG--RTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFK-TSADDVYAVGDVATFPMKLYREMR  309 (433)
Q Consensus       245 -----------~g--~~i~~d~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~-t~~~~vfa~Gd~~~~~~~~~~~~~  309 (433)
                                 +|  ++++||.||+|+|++|+. +  .++.+ ++|++.+|+++| |+.|+|||+|||+..+.       
T Consensus       296 ~~~~~~~~~~~~g~~~~i~~d~vi~a~G~~p~~-l--~gl~~d~~g~i~vn~~~rvt~~pgvya~GD~~~gp~-------  365 (456)
T 1lqt_A          296 SDGSGRVAAKDTGEREELPAQLVVRSVGYRGVP-T--PGLPFDDQSGTIPNVGGRINGSPNEYVVGWIKRGPT-------  365 (456)
T ss_dssp             ECSSSSEEEEEEEEEEEEECSEEEECSCEECCC-C--TTSCCBTTTTBCCEETTEETTCSSEEECTHHHHCSC-------
T ss_pred             CCCcccccccCCCceEEEEcCEEEEccccccCC-C--CCCcccCCCCeeECCCCcCCCCCCEEEEeccCCCCc-------
Confidence                       34  469999999999999998 3  35555 568899999999 89999999999997653       


Q ss_pred             ccccHHHHHHHHHHHHHHHhccC
Q 013952          310 RVEHVDHARKSAEQAVKTIMATE  332 (433)
Q Consensus       310 ~~~~~~~A~~~g~~aa~~i~~~~  332 (433)
                        ..+..|..+|+.+|.+|++..
T Consensus       366 --~~i~~a~~~g~~~a~~i~~~l  386 (456)
T 1lqt_A          366 --GVIGTNKKDAQDTVDTLIKNL  386 (456)
T ss_dssp             --SCTTHHHHHHHHHHHHHHHHH
T ss_pred             --hhHHHHHHHHHHHHHHHHHHH
Confidence              234467899999999998654

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=99.98  E-value=2.1e-31  Score=259.71  Aligned_cols=284  Identities=15%  Similarity=0.174  Sum_probs=195.4

Q ss_pred             CeEEEECCCHHHHHHHHHHHH---cCCCCCcEEEEcCC-CC--CCCCCCcc---------ccccCCC----CC---CCCC
Q 013952            6 FKYVILGGGVSAGYAAREFAK---QGVKPGELAIISKE-VA--PYERPALS---------KAYLFPE----GT---ARLP   63 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~---~g~~~~~V~lie~~-~~--~~~~~~~~---------~~~~~~~----~~---~~~~   63 (433)
                      +||+|||||++|++||..|++   .|++..+|+|+|++ ..  .+......         ...++..    ..   ..++
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~~~~   82 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEFA   82 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGTCBT
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhcccC
Confidence            699999999999999999999   88654459999997 21  11100000         0000000    00   0011


Q ss_pred             Ccccc--cC---C------CCCCCCHhHHHhCCcE--EEeCceEEEEECCCC----EEEeCC---C--cEEecceEEEcc
Q 013952           64 GFHVC--VG---S------GGERLLPEWYKEKGIE--LILSTEIVRADIASK----TLLSAT---G--LIFKYQILVIAT  121 (433)
Q Consensus        64 ~~~~~--~~---~------~~~~~~~~~~~~~~v~--~~~~~~v~~i~~~~~----~v~~~~---~--~~~~~d~lvlAt  121 (433)
                      ++...  .+   .      .....+.+.+++.+++  +..++.|..++....    +|++.+   +  .++.||+||+||
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~VVvAt  162 (464)
T 2xve_A           83 DYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCCT  162 (464)
T ss_dssp             TBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECC
T ss_pred             CCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEEEECC
Confidence            11100  00   0      0011123344556887  888889999987654    566654   3  578999999999


Q ss_pred             C--CCccccCCCCCCCCCC--CCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc
Q 013952          122 G--STVLRLTDFGVEGADA--KNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC  197 (433)
Q Consensus       122 G--~~~~~~~~~~~~g~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~  197 (433)
                      |  +.|+.|+   +||.+.  ..+++..++.+...       ..+++|+|||+|.+|+|+|..|.+.|.+|+++.+.+.+
T Consensus       163 G~~s~p~~p~---ipG~~~~~g~~~hs~~~~~~~~-------~~~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~~  232 (464)
T 2xve_A          163 GHFSTPYVPE---FEGFEKFGGRILHAHDFRDALE-------FKDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAP  232 (464)
T ss_dssp             CSSSSBCCCC---CBTTTTCCSEEEEGGGCCCGGG-------GTTSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSCC
T ss_pred             CCCCCCccCC---CCCcccCCceEEehhhhCCHhH-------cCCCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCCC
Confidence            9  7888877   455442  23555544333221       26899999999999999999999999999999998877


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhhhc--ccccCC
Q 013952          198 MPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG--QVAENK  275 (433)
Q Consensus       198 ~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~--~~~~~~  275 (433)
                      ++..+             ..||+++  ..|.++..  +    .|.+.+|+++++|.||+|||++|+.+++..  ++..++
T Consensus       233 ~~~~~-------------~~~V~~~--~~V~~i~~--~----~V~~~dG~~i~~D~Vi~atG~~p~~~~l~~~~gl~~~~  291 (464)
T 2xve_A          233 MGYKW-------------PENWDER--PNLVRVDT--E----NAYFADGSSEKVDAIILCTGYIHHFPFLNDDLRLVTNN  291 (464)
T ss_dssp             CCCCC-------------CTTEEEC--SCEEEECS--S----EEEETTSCEEECSEEEECCCBCCCCTTBCTTTCCCCCS
T ss_pred             CCCCC-------------CCceEEc--CCeEEEeC--C----EEEECCCCEEeCCEEEECCCCCCCCCCcCcccccccCC
Confidence            65422             2578887  67888853  2    578899999999999999999999988864  455544


Q ss_pred             C-cEEeCCC---CCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccC
Q 013952          276 G-GIETDDF---FKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE  332 (433)
Q Consensus       276 g-~i~vd~~---~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~  332 (433)
                      + ++ ++.+   ++|+.|+||++|||+..           ..+..|..||+.+|+++.+..
T Consensus       292 ~~~v-~~~~~~~~~t~~p~i~aiGd~~~~-----------~~~~~a~~qa~~~a~~l~G~~  340 (464)
T 2xve_A          292 RLWP-LNLYKGVVWEDNPKFFYIGMQDQW-----------YSFNMFDAQAWYARDVIMGRL  340 (464)
T ss_dssp             SSCC-SSEETTTEESSSTTEEECSCSCCS-----------SCHHHHHHHHHHHHHHHTTSS
T ss_pred             Cccc-ccccceEecCCCCCEEEEeCcccc-----------cchHHHHHHHHHHHHHHcCCC
Confidence            4 44 4433   57899999999998763           346778899999999998754

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=99.98  E-value=8.4e-32  Score=263.70  Aligned_cols=312  Identities=15%  Similarity=0.060  Sum_probs=195.4

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcC-----CCCCcEEEEcCC-CCCCCCCCc-cccccC---------CCCCCCCCCcc--
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQG-----VKPGELAIISKE-VAPYERPAL-SKAYLF---------PEGTARLPGFH--   66 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g-----~~~~~V~lie~~-~~~~~~~~~-~~~~~~---------~~~~~~~~~~~--   66 (433)
                      .+||+|||||++|+++|..|++.|     .+   |+|||++ ...|....+ ....+.         ...+.....+.  
T Consensus        30 ~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~---v~liE~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~  106 (463)
T 3s5w_A           30 VHDLIGVGFGPSNIALAIALQERAQAQGALE---VLFLDKQGDYRWHGNTLVSQSELQISFLKDLVSLRNPTSPYSFVNY  106 (463)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHHHHHCCCC---EEEEESCSSCCSSGGGCCSSCBCSSCTTSSSSTTTCTTCTTSHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhcccccCccc---EEEEecCCCCCCcCCCCCCCCcCCcchhhccccccCCCCCCChhHh
Confidence            469999999999999999999998     66   9999999 433332111 000000         00000000000  


Q ss_pred             -cccC--------CCC-------CCCCHhHHHhCCcEEEeCceEEEEECC---CC----EEEeCCCc----EEecceEEE
Q 013952           67 -VCVG--------SGG-------ERLLPEWYKEKGIELILSTEIVRADIA---SK----TLLSATGL----IFKYQILVI  119 (433)
Q Consensus        67 -~~~~--------~~~-------~~~~~~~~~~~~v~~~~~~~v~~i~~~---~~----~v~~~~~~----~~~~d~lvl  119 (433)
                       ...+        ...       ...+....++.++++..+++|..+++.   ++    .|.+.++.    ++.||+||+
T Consensus       107 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d~lVl  186 (463)
T 3s5w_A          107 LHKHDRLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVV  186 (463)
T ss_dssp             HHHTTCHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEESEEEE
T ss_pred             hhhcCceeecccccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeCEEEE
Confidence             0000        000       011112233467899999899999875   43    56666665    899999999


Q ss_pred             ccCCCccccCCCCCCCCCCC-CEEEecCHHH-HHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhC--CCeEEEEccCC
Q 013952          120 ATGSTVLRLTDFGVEGADAK-NIFYLREIDD-ADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKIN--NIDVSMVYPEP  195 (433)
Q Consensus       120 AtG~~~~~~~~~~~~g~~~~-~v~~~~~~~~-~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~--g~~V~li~~~~  195 (433)
                      |||+.|..|+.  +++.... .+++.....+ ...+....  ..+++|+|||+|.+|+|+|..|.+.  +.+|+++.+.+
T Consensus       187 AtG~~p~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~  262 (463)
T 3s5w_A          187 SPGGTPRIPQV--FRALKGDGRVFHHSQYLEHMAKQPCSS--GKPMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRAS  262 (463)
T ss_dssp             CCCCEECCCGG--GGGGTTCTTEEEGGGHHHHHCC---------CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSS
T ss_pred             CCCCCCCCcch--hhhcCCCCcEEECHHHHhhHHHhhhcc--cCCCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCC
Confidence            99998887763  3333333 5666554332 21221111  1478999999999999999999998  89999999988


Q ss_pred             ccCCCC-------------------CCHHHHHHHHHHHHh--------------------------cCcEEEcCCeEEEE
Q 013952          196 WCMPRL-------------------FTADIAAFYEGYYAN--------------------------KGIKIIKGTVAVGF  230 (433)
Q Consensus       196 ~~~~~~-------------------~~~~~~~~l~~~l~~--------------------------~GV~v~~~~~v~~i  230 (433)
                      .+++..                   ++++....+.+.+..                          .||+++++++|+++
T Consensus       263 ~~~p~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~~~~~v~~v  342 (463)
T 3s5w_A          263 ALKPADDSPFVNEVFAPKFTDLIYSREHAERERLLREYHNTNYSVVDTDLIERIYGVFYRQKVSGIPRHAFRCMTTVERA  342 (463)
T ss_dssp             SCCBCCCCHHHHGGGSHHHHHHHHHSCHHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCCCCSEEETTEEEEEE
T ss_pred             CCcCccCCccchhccChhHHHHHhcCCHHHHHHHHHHhhccCCCcCCHHHHHHHHHHHHHHHhcCCCCeEEEeCCEEEEE
Confidence            765421                   122222233222222                          69999999999999


Q ss_pred             EecCCCcEEEEEeC---CCc--EEECCEEEEcccCccC--hhhhhcccccCCCcEEeCCCCCCC-----CCCeEEcCccc
Q 013952          231 TTNADGEVKEVKLK---DGR--TLEADIVVVGVGGRPL--ISLFKGQVAENKGGIETDDFFKTS-----ADDVYAVGDVA  298 (433)
Q Consensus       231 ~~~~~g~~~~v~~~---~g~--~i~~d~vi~a~G~~p~--~~~~~~~~~~~~g~i~vd~~~~t~-----~~~vfa~Gd~~  298 (433)
                      ..++  ....+.+.   +|+  ++++|.||+|+|++|+  ..++....... |++.||+++++.     .|+|||+|||.
T Consensus       343 ~~~~--~~~~v~~~~~~~g~~~~~~~D~Vv~AtG~~p~~~~~~l~~l~~~~-g~i~v~~~~~~~~~~~~~~~Ifa~G~~~  419 (463)
T 3s5w_A          343 TATA--QGIELALRDAGSGELSVETYDAVILATGYERQLHRQLLEPLAEYL-GDHEIGRDYRLQTDERCKVAIYAQGFSQ  419 (463)
T ss_dssp             EEET--TEEEEEEEETTTCCEEEEEESEEEECCCEECCC-CTTTGGGGGGB-C--CCCTTSBCCBCTTBCSEEEESSCCH
T ss_pred             EecC--CEEEEEEEEcCCCCeEEEECCEEEEeeCCCCCCccchhHHHHHHh-CCcccCcccccccCCCCCCeEEEcCCCc
Confidence            8733  33456665   665  4999999999999999  44543211112 889999999873     56799999998


Q ss_pred             cccccccCcccccccHHHHHHHHHHHHHHHhcc
Q 013952          299 TFPMKLYREMRRVEHVDHARKSAEQAVKTIMAT  331 (433)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~  331 (433)
                      ......  .+   .....|.+++++++..+-..
T Consensus       420 ~~~g~~--~~---~l~~~a~r~~~i~~~~~~~~  447 (463)
T 3s5w_A          420 ASHGLS--DT---LLSVLPVRAEEISGSLYQHL  447 (463)
T ss_dssp             HHHCTT--TT---SSTTHHHHHHHHHHHHHHHH
T ss_pred             ccCCcC--cc---chhHHHHHHHHHHHHHHhhc
Confidence            643321  11   34455777888776555443

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=99.97  E-value=2.3e-32  Score=280.00  Aligned_cols=300  Identities=16%  Similarity=0.168  Sum_probs=197.3

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      .+||+|||||+||++||..|++.|++   |+|+|++...      .+.+...   ..+|++..      .....+++.. 
T Consensus       389 ~~~VvIIGgGpAGl~aA~~L~~~G~~---Vtlie~~~~~------GG~~~~~---~~~pg~~~------~~~~~~~~~~-  449 (729)
T 1o94_A          389 KDSVLIVGAGPSGSEAARVLMESGYT---VHLTDTAEKI------GGHLNQV---AALPGLGE------WSYHRDYRET-  449 (729)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSST------TTTHHHH---TTSTTCGG------GHHHHHHHHH-
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCe---EEEEeCCCCc------CCeeeec---ccCCChHH------HHHHHHHHHH-
Confidence            57999999999999999999999987   9999998211      1111111   11222110      0111111111 


Q ss_pred             CcEEE--eCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccc-----cCCCCCCCCC--CCCEEEecCHHHHHHHHH
Q 013952           85 GIELI--LSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLR-----LTDFGVEGAD--AKNIFYLREIDDADKLVE  155 (433)
Q Consensus        85 ~v~~~--~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~-----~~~~~~~g~~--~~~v~~~~~~~~~~~~~~  155 (433)
                      .++..  ....+..+.. ++.+.++++.++.||+||+|||+.|+.     |..+.+||.+  ..++++..   +...  .
T Consensus       450 ~i~~~~~~~~~~v~i~~-~~~v~~~~~~~~~~d~vviAtG~~~~~~~~~~p~~~~ipG~~~~~~~v~~~~---~~l~--~  523 (729)
T 1o94_A          450 QITKLLKKNKESQLALG-QKPMTADDVLQYGADKVIIATGARWNTDGTNCLTHDPIPGADASLPDQLTPE---QVMD--G  523 (729)
T ss_dssp             HHHHHHHHSTTCEEECS-CCCCCHHHHHTSCCSEEEECCCEEECSSCCCTTTSSCCTTCCTTSTTEECHH---HHHH--C
T ss_pred             HHHHhhcccCCceEEEe-CeEEehhhccccCCCEEEEcCCCCcccccccCccCCCCCCccccCCCEEEHH---HHhc--C
Confidence            01100  0011222222 233444455568999999999998532     2222367765  55677532   2211  1


Q ss_pred             HHHhcCCCcEEEEC--CCHHHHHHHHHHHhCCCeEEEEccCCccCCC-CCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013952          156 AIKAKKNGKAVVVG--GGYIGLELSAALKINNIDVSMVYPEPWCMPR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT  232 (433)
Q Consensus       156 ~~~~~~~~~v~ViG--~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~-~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~  232 (433)
                        ....+++|+|||  +|.+|+|+|..|.+.|.+|+++++.+ +++. .++.. ...+.+.+++.||++++++.+.++..
T Consensus       524 --~~~~gk~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~-l~~~~~~~~~-~~~~~~~l~~~GV~i~~~~~v~~i~~  599 (729)
T 1o94_A          524 --KKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH-LANYMHFTLE-YPNMMRRLHELHVEELGDHFCSRIEP  599 (729)
T ss_dssp             --CSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC-TTHHHHHTTC-HHHHHHHHHHTTCEEECSEEEEEEET
T ss_pred             --CCCCCCeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc-cccccccccc-HHHHHHHHHhCCCEEEcCcEEEEEEC
Confidence              122468999998  99999999999999999999999988 5431 12222 45677888999999999999999975


Q ss_pred             cCCCcEEEEEeCCC-cE------------------EECCEEEEcccCccChhhhhcccccCCCcEEeCCCCCCCCCCeEE
Q 013952          233 NADGEVKEVKLKDG-RT------------------LEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYA  293 (433)
Q Consensus       233 ~~~g~~~~v~~~~g-~~------------------i~~d~vi~a~G~~p~~~~~~~~~~~~~g~i~vd~~~~t~~~~vfa  293 (433)
                        ++........++ +.                  +++|.||+|+|++|++.++.. +..     .+|+++||+.|+|||
T Consensus       600 --~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aD~Vv~a~G~~p~~~l~~~-l~~-----~vd~~~~t~~~~VyA  671 (729)
T 1o94_A          600 --GRMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSECTLWNE-LKA-----RESEWAENDIKGIYL  671 (729)
T ss_dssp             --TEEEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCEEECCHHHHH-HHH-----TGGGTGGGTCCEEEE
T ss_pred             --CeEEEEEecCCceEEecccccccccccCCcceeeeCCEEEECCCCCCChHHHHH-Hhh-----hcccccccCCCCeEE
Confidence              331111111232 22                  999999999999999987652 211     268899999999999


Q ss_pred             cCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEec
Q 013952          294 VGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYG  359 (433)
Q Consensus       294 ~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g  359 (433)
                      +|||+..           ..+..|..+|+.||.+|.+..      .+..+|+ ++..+++..+.+|
T Consensus       672 iGD~~~~-----------~~~~~A~~~G~~aA~~i~~~l------~~~~~p~-~~~~~~~~~~~~~  719 (729)
T 1o94_A          672 IGDAEAP-----------RLIADATFTGHRVAREIEEAN------PQIAIPY-KRETIAWGTPHMP  719 (729)
T ss_dssp             CGGGTSC-----------CCHHHHHHHHHHHHHTTTSSC------TTSCCCC-CCCCCCTTCCSST
T ss_pred             EeCccch-----------hhHHHHHHHHHHHHHHhhhhc------ccCCCCe-eeecccCcccccC
Confidence            9999862           457789999999999998753      4456676 6677777665555

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.97  E-value=2.9e-31  Score=260.67  Aligned_cols=259  Identities=15%  Similarity=0.087  Sum_probs=188.1

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHH
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK   82 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (433)
                      ..+||+|||||++|+++|.+|++. ++   |+|+|++ ...+.....+..      ...+++..    ......+.+.+ 
T Consensus       107 ~~~dVvIIGgG~aGl~aA~~L~~~-~~---V~vie~~~~~GG~~~~~~~~------~~g~~~~~----~~~~~~l~~~l-  171 (493)
T 1y56_A          107 VVVDVAIIGGGPAGIGAALELQQY-LT---VALIEERGWLGGDMWLKGIK------QEGFNKDS----RKVVEELVGKL-  171 (493)
T ss_dssp             EEESCCEECCSHHHHHHHHHHTTT-CC---EEEECTTSSSSCSGGGTCSE------ETTTTEEH----HHHHHHHHHTC-
T ss_pred             ccCCEEEECccHHHHHHHHHHHhc-CC---EEEEeCCCCCCCeeeccccc------cCCCCCCH----HHHHHHHHHHH-
Confidence            357999999999999999999998 66   9999998 322211100000      00011000    00000111112 


Q ss_pred             hCCcEEEeCceEEEEECCCCEEEe---CCCc--EEecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHH
Q 013952           83 EKGIELILSTEIVRADIASKTLLS---ATGL--IFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAI  157 (433)
Q Consensus        83 ~~~v~~~~~~~v~~i~~~~~~v~~---~~~~--~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~  157 (433)
                      +.+++++.++.+..++.+++.+..   .+++  ++.||+||+|||+.|+.|+   ++|.+.+++++..   ++..+.+..
T Consensus       172 ~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~d~lvlAtGa~~~~~~---~~g~~~~gv~~~~---~~~~~~~~~  245 (493)
T 1y56_A          172 NENTKIYLETSALGVFDKGEYFLVPVVRGDKLIEILAKRVVLATGAIDSTML---FENNDMPGVFRRD---FALEVMNVW  245 (493)
T ss_dssp             CTTEEEETTEEECCCEECSSSEEEEEEETTEEEEEEESCEEECCCEEECCCC---CTTTTSTTEEEHH---HHHHHHHTS
T ss_pred             hcCCEEEcCCEEEEEEcCCcEEEEEEecCCeEEEEECCEEEECCCCCccCCC---CCCCCCCCEEEcH---HHHHHHHhc
Confidence            458999888888888877664332   3443  6899999999999998777   6777777888643   333333322


Q ss_pred             HhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCc
Q 013952          158 KAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGE  237 (433)
Q Consensus       158 ~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~  237 (433)
                      ...++++++|+|+|++++|                                   +.+++.||++++++.|.++..  ++.
T Consensus       246 ~~~~~~~vvViGgG~~gle-----------------------------------~~l~~~GV~v~~~~~v~~i~~--~~~  288 (493)
T 1y56_A          246 EVAPGRKVAVTGSKADEVI-----------------------------------QELERWGIDYVHIPNVKRVEG--NEK  288 (493)
T ss_dssp             CBCSCSEEEEESTTHHHHH-----------------------------------HHHHHHTCEEEECSSEEEEEC--SSS
T ss_pred             ccCCCCEEEEECCCHHHHH-----------------------------------HHHHhCCcEEEeCCeeEEEec--CCc
Confidence            2235689999999999988                                   456788999999999999986  445


Q ss_pred             EEEEEeCCCcEEECCEEEEcccCccChhhhhc-cccc---CCCcEE-eCCCCCCCCCCeEEcCccccccccccCcccccc
Q 013952          238 VKEVKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAE---NKGGIE-TDDFFKTSADDVYAVGDVATFPMKLYREMRRVE  312 (433)
Q Consensus       238 ~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~-~~~~---~~g~i~-vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~  312 (433)
                      +..+.+.+|+++++|.||+|+|++|+.+++.. ++..   ++|++. ||++++ +.|+|||+|||++.           .
T Consensus       289 v~~v~~~~g~~i~aD~Vv~a~G~~p~~~l~~~~g~~~~~~~~g~i~~vd~~~~-s~~~vya~GD~~~~-----------~  356 (493)
T 1y56_A          289 VERVIDMNNHEYKVDALIFADGRRPDINPITQAGGKLRFRRGYYSPVLDEYHR-IKDGIYVAGSAVSI-----------K  356 (493)
T ss_dssp             CCEEEETTCCEEECSEEEECCCEEECCHHHHHTTCCEEEETTEEEECCCTTSE-EETTEEECSTTTCC-----------C
T ss_pred             eEEEEeCCCeEEEeCEEEECCCcCcCchHHHhcCCCccccCCceeeccccccC-cCCCEEEEeccCCc-----------c
Confidence            56788888989999999999999999987743 4433   366777 899999 89999999999975           3


Q ss_pred             cHHHHHHHHHHHHHHHhccC
Q 013952          313 HVDHARKSAEQAVKTIMATE  332 (433)
Q Consensus       313 ~~~~A~~~g~~aa~~i~~~~  332 (433)
                      ++..|..+|++||.+|.+..
T Consensus       357 ~~~~A~~~g~~aa~~i~~~l  376 (493)
T 1y56_A          357 PHYANYLEGKLVGAYILKEF  376 (493)
T ss_dssp             CHHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHHHc
Confidence            57789999999999998764

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=99.97  E-value=3.1e-32  Score=278.12  Aligned_cols=284  Identities=17%  Similarity=0.167  Sum_probs=199.1

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHh
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   83 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (433)
                      ..+||+|||||+||++||++|+++|++   |+|+|++...      .+.+...   ...|+....  ..........+.+
T Consensus       390 ~~~~VvIIGgG~AGl~aA~~La~~G~~---V~liE~~~~~------GG~~~~~---~~~p~~~~~--~~~~~~~~~~~~~  455 (690)
T 3k30_A          390 SDARVLVVGAGPSGLEAARALGVRGYD---VVLAEAGRDL------GGRVTQE---SALPGLSAW--GRVKEYREAVLAE  455 (690)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCE---EEEECSSSSS------CTHHHHH---HTSTTCGGG--GHHHHHHHHHHHT
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCCC------CCEeeec---cCCCchhHH--HHHHHHHHHHHHH
Confidence            358999999999999999999999987   9999998211      1111110   111111100  0001123344555


Q ss_pred             C-CcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccc-----cCCCCCCCCCCCCEEEecCHHHHHHHHHHH
Q 013952           84 K-GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLR-----LTDFGVEGADAKNIFYLREIDDADKLVEAI  157 (433)
Q Consensus        84 ~-~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~-----~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~  157 (433)
                      . +++++.++.+          ...+..++.||+||+|||+.|+.     |..+.++|.+...+++..   +...  .  
T Consensus       456 ~~gv~~~~~~~v----------~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~~~~i~G~~~~~v~~~~---~~l~--~--  518 (690)
T 3k30_A          456 LPNVEIYRESPM----------TGDDIVEFGFEHVITATGATWRTDGVARFHTTALPIAEGMQVLGPD---DLFA--G--  518 (690)
T ss_dssp             CTTEEEESSCCC----------CHHHHHHTTCCEEEECCCEEECSSCCSSSCSSCCCBCTTSEEECHH---HHHT--T--
T ss_pred             cCCCEEEECCee----------cHHHHhhcCCCEEEEcCCCccccccccccCCCCCCCCCCCcEEcHH---HHhC--C--
Confidence            5 8888877543          22334568899999999998542     112226776655555432   2111  1  


Q ss_pred             HhcCCCcEEEEC--CCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCC
Q 013952          158 KAKKNGKAVVVG--GGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD  235 (433)
Q Consensus       158 ~~~~~~~v~ViG--~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~  235 (433)
                      ....+++++|||  +|.+|+|+|..|.+.|.+|+++++.+.+++...+......+.+.+++.||+++++++|+++..  +
T Consensus       519 ~~~~g~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~--~  596 (690)
T 3k30_A          519 RLPDGKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWTNNTFEVNRIQRRLIENGVARVTDHAVVAVGA--G  596 (690)
T ss_dssp             CCCSSSEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSSTTGGGGGGTCHHHHHHHHHHTTCEEEESEEEEEEET--T
T ss_pred             CCCCCCEEEEEcCCCCccHHHHHHHHHhCCCeeEEEecccccccccccchhHHHHHHHHHHCCCEEEcCcEEEEEEC--C
Confidence            122467899999  999999999999999999999999888776544466678888999999999999999999975  3


Q ss_pred             CcEEEEE---eCCCcEEECCEEEEcccCccChhhhhcccccCCCcEEeCCCCCCCCCCeEEcCccccccccccCcccccc
Q 013952          236 GEVKEVK---LKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVE  312 (433)
Q Consensus       236 g~~~~v~---~~~g~~i~~d~vi~a~G~~p~~~~~~~~~~~~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~  312 (433)
                      +  ..+.   ..+++++++|.||+|+|++|+..++... .. .+.       +|+.|+||++|||+..           .
T Consensus       597 ~--~~v~~~~~~~~~~i~aD~VV~A~G~~p~~~l~~~l-~~-~~~-------~t~~~~VyaiGD~~~~-----------~  654 (690)
T 3k30_A          597 G--VTVRDTYASIERELECDAVVMVTARLPREELYLDL-VA-RRD-------AGEIASVRGIGDAWAP-----------G  654 (690)
T ss_dssp             E--EEEEETTTCCEEEEECSEEEEESCEEECCHHHHHH-HH-HHH-------HTSCSEEEECGGGTSC-----------B
T ss_pred             e--EEEEEccCCeEEEEECCEEEECCCCCCChHHHHHH-hh-hhc-------ccCCCCEEEEeCCCch-----------h
Confidence            3  2233   2345689999999999999999876431 11 111       7899999999999974           3


Q ss_pred             cHHHHHHHHHHHHHHHhccCCCCCccCCCC
Q 013952          313 HVDHARKSAEQAVKTIMATEGGKTVTGYDY  342 (433)
Q Consensus       313 ~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~  342 (433)
                      .+..|..||+.+|.+|.+...+..+.+|..
T Consensus       655 ~~~~A~~~g~~aa~~i~~~l~g~~~~p~~~  684 (690)
T 3k30_A          655 TIAAAVWSGRRAAEEFDAVLPSNDEVPFRR  684 (690)
T ss_dssp             CHHHHHHHHHHHHHHTTCCCCCTTSCSSCC
T ss_pred             hHHHHHHHHHHHHHHHHhhccCCCCCCcCh
Confidence            466799999999999999877665555554

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=99.97  E-value=1.7e-30  Score=252.95  Aligned_cols=286  Identities=12%  Similarity=0.084  Sum_probs=190.9

Q ss_pred             CCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CC--CCCCCCccc---------------cccC--------C
Q 013952            3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VA--PYERPALSK---------------AYLF--------P   56 (433)
Q Consensus         3 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~--~~~~~~~~~---------------~~~~--------~   56 (433)
                      +..+||+|||||++|+++|.+|++.|. ..+|+|+|+. ..  .|.......               .+..        .
T Consensus         4 ~~~~dV~IIGaG~aGl~aA~~L~~~G~-~~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~   82 (447)
T 2gv8_A            4 PTIRKIAIIGAGPSGLVTAKALLAEKA-FDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPS   82 (447)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHTTTC-CSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCC
T ss_pred             CCCCEEEEECccHHHHHHHHHHHhcCC-CCCeEEEecCCCCCCeecCCCCCCcccccccccccccccccccccccCCccC
Confidence            346899999999999999999999987 1239999987 21  111110000               0000        0


Q ss_pred             CC----CC-------CCCCcccccCCCC-------CCCCHhHHHhCCcEEEeCceEEEEECCCC--EEEeCC---Cc---
Q 013952           57 EG----TA-------RLPGFHVCVGSGG-------ERLLPEWYKEKGIELILSTEIVRADIASK--TLLSAT---GL---  110 (433)
Q Consensus        57 ~~----~~-------~~~~~~~~~~~~~-------~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~---~~---  110 (433)
                      ..    ..       .+++++.......       ...+.++.++.+..+..+++|..++....  .|++.+   |.   
T Consensus        83 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~~~~~V~~~~~~~G~~~~  162 (447)
T 2gv8_A           83 PLYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPIS  162 (447)
T ss_dssp             CCCTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCEE
T ss_pred             chhhhhccCCCHHHhccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCCCeEEEEEeecCCCCeeE
Confidence            00    00       0000000000000       01112233345667888889999987655  465554   55   


Q ss_pred             EEecceEEEccCC--CccccCCCCCCCCC------CCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHH
Q 013952          111 IFKYQILVIATGS--TVLRLTDFGVEGAD------AKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALK  182 (433)
Q Consensus       111 ~~~~d~lvlAtG~--~~~~~~~~~~~g~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~  182 (433)
                      ++.||+||+|||.  .|+.|+   ++|.+      ...++++.++.+...+       .+++|+|||+|++|+|+|..|+
T Consensus       163 ~~~~d~VVvAtG~~s~p~~p~---i~G~~~~~~~~~g~v~~~~~~~~~~~~-------~~k~VvVvG~G~sg~e~A~~l~  232 (447)
T 2gv8_A          163 KDIFDAVSICNGHYEVPYIPN---IKGLDEYAKAVPGSVLHSSLFREPELF-------VGESVLVVGGASSANDLVRHLT  232 (447)
T ss_dssp             EEEESEEEECCCSSSSBCBCC---CBTHHHHHHHSTTSEEEGGGCCCGGGG-------TTCCEEEECSSHHHHHHHHHHT
T ss_pred             EEEeCEEEECCCCCCCCCCCC---CCChhhhhccCCccEEEecccCChhhc-------CCCEEEEEccCcCHHHHHHHHH
Confidence            7999999999998  777776   56543      1346766554443222       5899999999999999999999


Q ss_pred             hCCCe-EEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcE-EECCEEEEcccC
Q 013952          183 INNID-VSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRT-LEADIVVVGVGG  260 (433)
Q Consensus       183 ~~g~~-V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~-i~~d~vi~a~G~  260 (433)
                      +.+.+ |+++.+.+.+                +++.||.+  ...|+++..  ++  ..|.+.+|+. +++|.||+|+|+
T Consensus       233 ~~~~~~V~l~~r~~~~----------------l~~~~i~~--~~~v~~~~~--~~--~~v~~~dG~~~~~~D~vi~atG~  290 (447)
T 2gv8_A          233 PVAKHPIYQSLLGGGD----------------IQNESLQQ--VPEITKFDP--TT--REIYLKGGKVLSNIDRVIYCTGY  290 (447)
T ss_dssp             TTSCSSEEEECTTCCS----------------CBCSSEEE--ECCEEEEET--TT--TEEEETTTEEECCCSEEEECCCB
T ss_pred             HHhCCcEEEEeCCCCc----------------CCCCCeEE--ecCeEEEec--CC--CEEEECCCCEeccCCEEEECCCC
Confidence            99999 9999988754                34567774  567888864  33  2578889976 799999999999


Q ss_pred             ccChhh-----hhc-cccc-CCCcEEeCCCCC---CCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhc
Q 013952          261 RPLISL-----FKG-QVAE-NKGGIETDDFFK---TSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMA  330 (433)
Q Consensus       261 ~p~~~~-----~~~-~~~~-~~g~i~vd~~~~---t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~  330 (433)
                      +|++.+     ++. .... .++.+.++.+.+   ++.|++|++||+...           ..+..|..||+.+|+++.+
T Consensus       291 ~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~~~~~p~l~~~G~~~~~-----------~~~~~a~~qa~~~a~~~~g  359 (447)
T 2gv8_A          291 LYSVPFPSLAKLKSPETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLALHV-----------VPFPTSQAQAAFLARVWSG  359 (447)
T ss_dssp             CCCCCCHHHHSCCSTTTCCCSSSSSCCSEETTTEETTCTTEEESSCCBSS-----------CHHHHHHHHHHHHHHHHTT
T ss_pred             CcCCCCCcccccccccCceecCCCcccccccccccCCCCcEEEEeccccc-----------cCchHHHHHHHHHHHHHcC
Confidence            999888     543 1111 234455555555   689999999998764           2466788999999999987


Q ss_pred             cC
Q 013952          331 TE  332 (433)
Q Consensus       331 ~~  332 (433)
                      ..
T Consensus       360 ~~  361 (447)
T 2gv8_A          360 RL  361 (447)
T ss_dssp             SS
T ss_pred             CC
Confidence            53

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=99.96  E-value=1.2e-29  Score=258.39  Aligned_cols=258  Identities=17%  Similarity=0.215  Sum_probs=184.6

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHh
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   83 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (433)
                      .+||+|||||+||++||..|++.|++   |+|+|++ ...+ .+...         ..+++....  ......+..++++
T Consensus       373 ~~~vvIIGgG~AGl~aA~~l~~~g~~---V~lie~~~~~gg-~~~~~---------~~~~~~~~~--~~~~~~~~~~~~~  437 (671)
T 1ps9_A          373 KKNLAVVGAGPAGLAFAINAAARGHQ---VTLFDAHSEIGG-QFNIA---------KQIPGKEEF--YETLRYYRRMIEV  437 (671)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCE---EEEEESSSSSCT-THHHH---------TTSTTCTTH--HHHHHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCe---EEEEeCCCCCCC-eeecc---------ccCCCHHHH--HHHHHHHHHHHHH
Confidence            57999999999999999999999886   9999998 2211 11000         011111000  0001123455667


Q ss_pred             CCcEEEeCceEEEEECCCCEEEeCCCcEE-ecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCC
Q 013952           84 KGIELILSTEIVRADIASKTLLSATGLIF-KYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKN  162 (433)
Q Consensus        84 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~-~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~  162 (433)
                      .+++++.++.+..             ..+ .||+||||||+.|+.|+   ++|.+..++++..+   .  +..  ....+
T Consensus       438 ~gv~~~~~~~v~~-------------~~~~~~d~lviAtG~~p~~~~---i~G~~~~~v~~~~~---~--l~~--~~~~~  494 (671)
T 1ps9_A          438 TGVTLKLNHTVTA-------------DQLQAFDETILASGIVPRTPP---IDGIDHPKVLSYLD---V--LRD--KAPVG  494 (671)
T ss_dssp             HTCEEEESCCCCS-------------SSSCCSSEEEECCCEEECCCC---CBTTTSTTEEEHHH---H--HTS--CCCCC
T ss_pred             cCCEEEeCcEecH-------------HHhhcCCEEEEccCCCcCCCC---CCCCCCCcEeeHHH---H--hhC--CCCCC
Confidence            8999998865431             124 89999999999998877   57766567776422   1  110  11257


Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCC-------------------------------------eEEEEccCCccCCCCCCHH
Q 013952          163 GKAVVVGGGYIGLELSAALKINNI-------------------------------------DVSMVYPEPWCMPRLFTAD  205 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~-------------------------------------~V~li~~~~~~~~~~~~~~  205 (433)
                      ++++|||+|++|+|+|..|.+.|.                                     +|+++.+.+..+...+++.
T Consensus       495 ~~VvVIGgG~~g~E~A~~l~~~G~~vtv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~l~~~l~~~  574 (671)
T 1ps9_A          495 NKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKT  574 (671)
T ss_dssp             SEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCSGGGBCTTCCCCCCCSSEEEEECSSCSCTTTTSCTT
T ss_pred             CeEEEECCChhHHHHHHHHHhcCCCcccchhhhhhhhcccccccccccccccccccCCCCcEEEEEEecchhhccccccc
Confidence            899999999999999999998773                                     4667776665555446777


Q ss_pred             HHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCC--cEEECCEEEEcccCccChhhhhcccccCCCcEEeCCC
Q 013952          206 IAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG--RTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDF  283 (433)
Q Consensus       206 ~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g--~~i~~d~vi~a~G~~p~~~~~~~~~~~~~g~i~vd~~  283 (433)
                      ....+.+.+++.||+++++++++++..  ++  ..+. .+|  +++++|.||+|+|++|+++++..              
T Consensus       575 ~~~~~~~~l~~~GV~v~~~~~v~~i~~--~~--v~~~-~~G~~~~i~~D~Vi~a~G~~p~~~l~~~--------------  635 (671)
T 1ps9_A          575 TGWIHRTTLLSRGVKMIPGVSYQKIDD--DG--LHVV-INGETQVLAVDNVVICAGQEPNRALAQP--------------  635 (671)
T ss_dssp             THHHHHHHHHHTTCEEECSCEEEEEET--TE--EEEE-ETTEEEEECCSEEEECCCEEECCTTHHH--------------
T ss_pred             cHHHHHHHHHhcCCEEEeCcEEEEEeC--Ce--EEEe-cCCeEEEEeCCEEEECCCccccHHHHHH--------------
Confidence            778888999999999999999999974  33  2232 566  57999999999999999887642              


Q ss_pred             CCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHH
Q 013952          284 FKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTI  328 (433)
Q Consensus       284 ~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i  328 (433)
                      ++...++||++|||+....         ..+..|++||..+|.||
T Consensus       636 l~~~g~~v~aiGD~~~~~~---------~~~~~A~~~g~~aA~~i  671 (671)
T 1ps9_A          636 LIDSGKTVHLIGGCDVAME---------LDARRAIAQGTRLALEI  671 (671)
T ss_dssp             HHTTTCCEEECGGGTCCSS---------CCHHHHHHHHHHHHHHC
T ss_pred             HHhcCCCEEEECCcCccCc---------hhHHHHHHHHHHHHHhC
Confidence            1123479999999987643         35888999999999986

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=99.96  E-value=4.2e-29  Score=246.91  Aligned_cols=297  Identities=16%  Similarity=0.215  Sum_probs=187.6

Q ss_pred             cCeEEEECCCHHHHHHHHHHH-HcCCCCCcEEEEcCC-CCC-------CCCC--Cc-cccccCCCCCC--CCCCcc--cc
Q 013952            5 SFKYVILGGGVSAGYAAREFA-KQGVKPGELAIISKE-VAP-------YERP--AL-SKAYLFPEGTA--RLPGFH--VC   68 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~-~~g~~~~~V~lie~~-~~~-------~~~~--~~-~~~~~~~~~~~--~~~~~~--~~   68 (433)
                      ++||+|||||++|+++|..|+ +.|++   |+|+|++ ...       |..+  .. +..+.......  ..+.+.  ..
T Consensus         8 ~~dVvIIGaG~aGl~aA~~L~~~~G~~---v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~~~   84 (540)
T 3gwf_A            8 TVDAVVIGAGFGGIYAVHKLHHELGLT---TVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYI   84 (540)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCC---EEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBSEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCC---EEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCcccCC
Confidence            579999999999999999999 88886   9999997 210       1000  00 00000000000  000000  00


Q ss_pred             cCCCCCCCCHhHHHhCCc--EEEeCceEEEEECCCC----EEEeCCCcEEecceEEEccC--CCccccCCCCCCCCCC--
Q 013952           69 VGSGGERLLPEWYKEKGI--ELILSTEIVRADIASK----TLLSATGLIFKYQILVIATG--STVLRLTDFGVEGADA--  138 (433)
Q Consensus        69 ~~~~~~~~~~~~~~~~~v--~~~~~~~v~~i~~~~~----~v~~~~~~~~~~d~lvlAtG--~~~~~~~~~~~~g~~~--  138 (433)
                      ........+....++.++  ++..++.|..++.+++    .|.+.+|+++.||+||+|||  +.|..|+.   ||.+.  
T Consensus        85 ~~~ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s~p~~p~i---pG~~~f~  161 (540)
T 3gwf_A           85 TQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLSAINFPNL---PGLDTFE  161 (540)
T ss_dssp             EHHHHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSCCSBCCCCC---TTGGGCC
T ss_pred             CHHHHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcccccCCCCCC---CCccccC
Confidence            000111223444566787  7888899999987665    68888888999999999999  57887774   55431  


Q ss_pred             CCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc-CCC---CCCHHHHHHHH---
Q 013952          139 KNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC-MPR---LFTADIAAFYE---  211 (433)
Q Consensus       139 ~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~-~~~---~~~~~~~~~l~---  211 (433)
                      ..+++.....+.       ....+++|+|||+|.+|+|+|..|++.+.+|+++.+.+.+ ++.   .+++...+.++   
T Consensus       162 g~~~~~~~~~~~-------~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~i~p~~~~~~~~~~~~~l~~~~  234 (540)
T 3gwf_A          162 GETIHTAAWPEG-------KSLAGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQYSVPVGNRPVNPEQIAEIKADY  234 (540)
T ss_dssp             SEEEEGGGCCSS-------CCCTTSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCCCEEECCCCBCCHHHHHHHHHTH
T ss_pred             CCEEEeecCCCc-------cccccceEEEECCCchHHHHHHHHHhhCCEEEEEECCCCccccCccCCCCHHHHHHHHhcc
Confidence            223333221111       0125899999999999999999999999999999998873 222   12222222221   


Q ss_pred             ----------------------------------------------------------------------HH--------
Q 013952          212 ----------------------------------------------------------------------GY--------  213 (433)
Q Consensus       212 ----------------------------------------------------------------------~~--------  213 (433)
                                                                                            +.        
T Consensus       235 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~dp  314 (540)
T 3gwf_A          235 DRIWERAKNSAVAFGFEESTLPAMSVSEEERNRIFQEAWDHGGGFRFMFGTFGDIATDEAANEAAASFIRAKVAEIIEDP  314 (540)
T ss_dssp             HHHHHHHHTSSSCSSSCCCCCCGGGSCHHHHHHHHHHHHHHCCHHHHHHTSCSCTTTCHHHHHHHHHHHHHHHHHHCCSH
T ss_pred             HHHHHHHHhccccccccccchhhhhCCHHHHHHHHHHHHhcccchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHcCCH
Confidence                                                                                  00        


Q ss_pred             -------------------------HHhcCcEEEc--CCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhh
Q 013952          214 -------------------------YANKGIKIIK--GTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISL  266 (433)
Q Consensus       214 -------------------------l~~~GV~v~~--~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~  266 (433)
                                               +.+.+|+++.  ...|++|..      .+|.+++|+++++|.||+|||+++++.+
T Consensus       315 ~~~~~l~P~~~g~kR~~~~~~y~~~l~~~nV~lv~~~~~~I~~it~------~gv~~~dG~~~~~DvIV~ATGf~~~~~~  388 (540)
T 3gwf_A          315 ETARKLMPKGLFAKRPLCDSGYYEVYNRPNVEAVAIKENPIREVTA------KGVVTEDGVLHELDVLVFATGFDAVDGN  388 (540)
T ss_dssp             HHHHHHCCCSCCCSSCEEESSTGGGGGSTTEEEEETTTSCEEEECS------SEEEETTCCEEECSEEEECCCBSCSSHH
T ss_pred             HHHHhCCCCCCCccccCCCccHHHHhcCCCEEEEeCCCCCccEEec------CeEEcCCCCEEECCEEEECCccCccccC
Confidence                                     1144788885  678888865      3588999999999999999999998854


Q ss_pred             hhccccc-CCCcEEeCC--------C--CC-CCCCCeEEc-CccccccccccCcccccccHHHHHHHHHHHHHHHhcc
Q 013952          267 FKGQVAE-NKGGIETDD--------F--FK-TSADDVYAV-GDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMAT  331 (433)
Q Consensus       267 ~~~~~~~-~~g~i~vd~--------~--~~-t~~~~vfa~-Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~  331 (433)
                      +.. +.. ..+++.+++        +  +. .+.||+|++ |..+.  ..        .....+..|++++++.|...
T Consensus       389 ~~~-~~i~g~~G~~l~~~w~~~~~~y~g~~v~gfPN~f~~~Gp~~~--~~--------s~~~~~e~q~~~i~~~i~~~  455 (540)
T 3gwf_A          389 YRR-IEIRGRDGLHINDHWDGQPTSYLGVSTANFPNWFMVLGPNGP--FT--------NLPPSIETQVEWISDTIGYA  455 (540)
T ss_dssp             HHT-SEEECGGGCBHHHHTSSSCCCBTTTBCTTCTTEEESSCSSCB--CS--------CHHHHHHHHHHHHHHHHHHH
T ss_pred             cCc-ceEECCCCcCHHHhhccChhhccccccCCCCceEEEecCCCC--Cc--------cHHHHHHHHHHHHHHHHHHH
Confidence            421 111 122333332        2  22 278999999 86554  11        23455667888888877543

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=99.95  E-value=2e-27  Score=235.12  Aligned_cols=189  Identities=15%  Similarity=0.114  Sum_probs=113.9

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CC-------CCC--CCCccccccC-CCCCCCC--CCccc--c
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VA-------PYE--RPALSKAYLF-PEGTARL--PGFHV--C   68 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~-------~~~--~~~~~~~~~~-~~~~~~~--~~~~~--~   68 (433)
                      .++||+|||||++|+++|..|++.|++   |+|||++ ..       .|.  ++........ .......  .....  .
T Consensus         8 ~~~dVvIIGaG~aGl~aA~~L~~~g~~---v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~   84 (545)
T 3uox_A            8 PALDAVVIGAGVTGIYQAFLINQAGMK---VLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFA   84 (545)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSC
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCC---EEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccCC
Confidence            357999999999999999999999986   9999998 21       000  0000000000 0000000  00000  0


Q ss_pred             cCCCCCCCCHhHHHhCCc--EEEeCceEEEEECCCC----EEEeCCCcEEecceEEEccC--CCccccCCCCCCCCCCCC
Q 013952           69 VGSGGERLLPEWYKEKGI--ELILSTEIVRADIASK----TLLSATGLIFKYQILVIATG--STVLRLTDFGVEGADAKN  140 (433)
Q Consensus        69 ~~~~~~~~~~~~~~~~~v--~~~~~~~v~~i~~~~~----~v~~~~~~~~~~d~lvlAtG--~~~~~~~~~~~~g~~~~~  140 (433)
                      ........+....++.++  ++..++.|..++.+..    .|.+.+|++++||+||+|||  +.|..|+.+|++... ..
T Consensus        85 ~~~ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~~p~ipG~~~f~-g~  163 (545)
T 3uox_A           85 SQPEMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSASRMPDIKGIDSFK-GE  163 (545)
T ss_dssp             BHHHHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC---CCCTTGGGCC-SE
T ss_pred             CHHHHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCCCcCCCCCCccccC-CC
Confidence            000011123334455666  6788889999887655    78888898999999999999  788887743332222 12


Q ss_pred             EEEecC-HHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc
Q 013952          141 IFYLRE-IDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC  197 (433)
Q Consensus       141 v~~~~~-~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~  197 (433)
                      +++... ..+.....+ ..+..+++|+|||+|.+|+|+|..|++.+.+|+++.+.+.+
T Consensus       164 ~~h~~~~~~~~~~~~~-~~~~~~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~~  220 (545)
T 3uox_A          164 SFHSSRWPTDAEGAPK-GVDFTGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPNW  220 (545)
T ss_dssp             EEEGGGCCBCTTSCBS-CCCCBTCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCCC
T ss_pred             eEEccccccccccccc-ccccCCCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCCc
Confidence            232221 111000000 00125799999999999999999999999999999998874

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=99.95  E-value=4.3e-27  Score=232.97  Aligned_cols=180  Identities=16%  Similarity=0.199  Sum_probs=118.5

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCC-------CCC--CCcc-ccccCCCCC-----CCCCCccc
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAP-------YER--PALS-KAYLFPEGT-----ARLPGFHV   67 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~-------~~~--~~~~-~~~~~~~~~-----~~~~~~~~   67 (433)
                      ..+||+|||||++|+++|..|++.|++   |+|||++ ...       |..  +... ..+......     ...... .
T Consensus        20 ~~~dVvIIGaG~aGl~aA~~L~~~G~~---v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~-~   95 (549)
T 4ap3_A           20 TSYDVVVVGAGIAGLYAIHRFRSQGLT---VRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEK-Y   95 (549)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSS-S
T ss_pred             CCCCEEEECchHHHHHHHHHHHhCCCC---EEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccC-C
Confidence            357999999999999999999999986   9999997 210       100  0000 000000000     000000 0


Q ss_pred             ccCCCCCCCCHhHHHhCCc--EEEeCceEEEEECCCC----EEEeCCCcEEecceEEEccC--CCccccCCCCCCCCCC-
Q 013952           68 CVGSGGERLLPEWYKEKGI--ELILSTEIVRADIASK----TLLSATGLIFKYQILVIATG--STVLRLTDFGVEGADA-  138 (433)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~v--~~~~~~~v~~i~~~~~----~v~~~~~~~~~~d~lvlAtG--~~~~~~~~~~~~g~~~-  138 (433)
                      ..+......+...+++.++  ++..+++|..++.+.+    +|.+.+|+++.||+||+|||  +.|..|+   +||.+. 
T Consensus        96 ~~~~ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~~p~---ipG~~~f  172 (549)
T 4ap3_A           96 ATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNANTPA---FDGLDRF  172 (549)
T ss_dssp             CBHHHHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEEECCCCC---CTTGGGC
T ss_pred             CCHHHHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCCCCCCCC---CCCcccC
Confidence            0000011223344566777  7888899999987665    78888898999999999999  7888887   455432 


Q ss_pred             -CCEEEecCHH-HHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc
Q 013952          139 -KNIFYLREID-DADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC  197 (433)
Q Consensus       139 -~~v~~~~~~~-~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~  197 (433)
                       ..+++..... +...       ..+++|+|||+|.+|+|+|..|++.+.+|+++.+.+.+
T Consensus       173 ~g~~~~~~~~~~~~~~-------~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~  226 (549)
T 4ap3_A          173 TGDIVHTARWPHDGVD-------FTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSANY  226 (549)
T ss_dssp             CSEEEEGGGCCTTCCC-------CBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCC
T ss_pred             CCceEEeccccccccc-------cCCCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCCc
Confidence             2234332211 1111       15899999999999999999999999999999998874

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=99.93  E-value=1.1e-25  Score=223.87  Aligned_cols=299  Identities=13%  Similarity=0.174  Sum_probs=180.9

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCC--CC-CCCccccccCCCCCCCCC---------Ccccc--
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAP--YE-RPALSKAYLFPEGTARLP---------GFHVC--   68 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~--~~-~~~~~~~~~~~~~~~~~~---------~~~~~--   68 (433)
                      ..+||+|||||++|+++|..|++.|++   |+|+|++ ...  +. .+.....+........+.         .+...  
T Consensus        15 ~~~dVvIIGaG~aGl~aA~~L~~~G~~---v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~~~   91 (542)
T 1w4x_A           15 EEVDVLVVGAGFSGLYALYRLRELGRS---VHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYA   91 (542)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSC
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCC---EEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhccCcccccC
Confidence            358999999999999999999999987   9999998 210  00 000000000000000000         00000  


Q ss_pred             cCCCCCCCCHhHHHhCC--cEEEeCceEEEEECCCC----EEEeCCCcEEecceEEEccC--CCccccCCCCCCCCCC-C
Q 013952           69 VGSGGERLLPEWYKEKG--IELILSTEIVRADIASK----TLLSATGLIFKYQILVIATG--STVLRLTDFGVEGADA-K  139 (433)
Q Consensus        69 ~~~~~~~~~~~~~~~~~--v~~~~~~~v~~i~~~~~----~v~~~~~~~~~~d~lvlAtG--~~~~~~~~~~~~g~~~-~  139 (433)
                      ........+....++.+  .++..+++|..++.++.    +|.+.+|+++++|+||+|||  +.|..|+   ++|.+. .
T Consensus        92 ~~~~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~~s~p~~p~---i~G~~~f~  168 (542)
T 1w4x_A           92 SQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSVPQLPN---FPGLKDFA  168 (542)
T ss_dssp             BHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCCCCC---CTTGGGCC
T ss_pred             CHHHHHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCCCCCCCCCC---CCCcccCC
Confidence            00000011122234444  56888889998876432    57778888899999999999  4677776   455431 2


Q ss_pred             C-EEEecCHH-HHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC-CC---CCCHHHHH-----
Q 013952          140 N-IFYLREID-DADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-PR---LFTADIAA-----  208 (433)
Q Consensus       140 ~-v~~~~~~~-~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~-~~---~~~~~~~~-----  208 (433)
                      + +++..... +..       +..+++|+|||+|.+|+|++..+++.+.+|+++.+.+.+. +.   .+.+...+     
T Consensus       169 G~~~hs~~~~~~~~-------~~~gk~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~~~~~p~~~~~~~~~~~~~~~~~  241 (542)
T 1w4x_A          169 GNLYHTGNWPHEPV-------DFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHFAVPARNAPLDPEFLADLKKR  241 (542)
T ss_dssp             SEEEEGGGCCSSCC-------CCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEECCCCBCCHHHHHHHHTT
T ss_pred             CceEECCCCCCchh-------ccCCCEEEEECCCccHHHHHHHHhhcCceEEEEEcCCcccccCCCCCCCHHHHHHHHhh
Confidence            2 33322111 100       1258999999999999999999999999999999877652 21   01111110     


Q ss_pred             ------------------------------------------------------------------HHHHH---------
Q 013952          209 ------------------------------------------------------------------FYEGY---------  213 (433)
Q Consensus       209 ------------------------------------------------------------------~l~~~---------  213 (433)
                                                                                        .+++.         
T Consensus       242 ~p~l~~~~~~~~~G~~~~~d~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (542)
T 1w4x_A          242 YAEFREESRNTPGGTHRYQGPKSALEVSDEELVETLERYWQEGGPDILAAYRDILRDRDANERVAEFIRNKIRNTVRDPE  321 (542)
T ss_dssp             HHHHHHHHHTSSSSSCCCCCCSCTTTSCHHHHHHHHHHHHHHCSGGGGGSSTTTTTCHHHHHHHHHHHHHHHHHHCSSHH
T ss_pred             CHHHHHHHHhhccccccCccccchhcCCHHHHHHHHHHHHhhcchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHcCCHH
Confidence                                                                              00111         


Q ss_pred             --------------------------HHhcCcEEE--cCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChh
Q 013952          214 --------------------------YANKGIKII--KGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS  265 (433)
Q Consensus       214 --------------------------l~~~GV~v~--~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~  265 (433)
                                                +.+.+|+++  .+..|+++..      .+|.++| +++++|.||+|||+++++.
T Consensus       322 ~~~~l~P~~~~~~~kr~~~~~~y~~~~~~~~v~lv~~~~~~i~~i~~------~gv~~~d-~~~~~D~ii~atG~~~~~~  394 (542)
T 1w4x_A          322 VAERLVPKGYPFGTKRLILEIDYYEMFNRDNVHLVDTLSAPIETITP------RGVRTSE-REYELDSLVLATGFDALTG  394 (542)
T ss_dssp             HHHHHSCCSSCSSSSCCEEESSHHHHTTSTTEEEEETTTSCEEEECS------SEEEESS-CEEECSEEEECCCCCCTTH
T ss_pred             HHHhcCCCCCCccccCCCCCccHHHHhCCCCEEEEecCCCCceEEcC------CeEEeCC-eEEecCEEEEcCCcccccc
Confidence                                      111346665  3567888754      3578888 8999999999999999877


Q ss_pred             hhhccccc-CCCcEEeCCCC----------CC-CCCCeEEc-CccccccccccCcccccccH-HHHHHHHHHHHHHHhcc
Q 013952          266 LFKGQVAE-NKGGIETDDFF----------KT-SADDVYAV-GDVATFPMKLYREMRRVEHV-DHARKSAEQAVKTIMAT  331 (433)
Q Consensus       266 ~~~~~~~~-~~g~i~vd~~~----------~t-~~~~vfa~-Gd~~~~~~~~~~~~~~~~~~-~~A~~~g~~aa~~i~~~  331 (433)
                      ++.. +.+ ..+++.+++++          .. +.||+|++ |+.+....         .++ ..|..|++.++++|...
T Consensus       395 ~~~~-~~i~g~~G~~l~~~w~~~~~~y~~~~v~~~Pn~f~~~G~~~~~~~---------~~~~~~~e~q~~~ia~~i~~~  464 (542)
T 1w4x_A          395 ALFK-IDIRGVGNVALKEKWAAGPRTYLGLSTAGFPNLFFIAGPGSPSAL---------SNMLVSIEQHVEWVTDHIAYM  464 (542)
T ss_dssp             HHHT-SEEECGGGCBHHHHTTTSCCCBTTTBCTTSTTEEESSCTTSSGGG---------SCHHHHHHHHHHHHHHHHHHH
T ss_pred             CcCc-eeeECCCCCCHHHhhcCchheecccccCCCCceEEEcCCCCCccc---------ccHHHHHHHHHHHHHHHHHHH
Confidence            6542 222 23344444322          22 66778776 77653211         334 67788999999998764


Q ss_pred             C
Q 013952          332 E  332 (433)
Q Consensus       332 ~  332 (433)
                      .
T Consensus       465 ~  465 (542)
T 1w4x_A          465 F  465 (542)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.90  E-value=3.5e-23  Score=175.72  Aligned_cols=158  Identities=19%  Similarity=0.163  Sum_probs=131.4

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCC--------CC-----CHHHHHHHHHHHHhcCcEEEcCCeEEEE
Q 013952          164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR--------LF-----TADIAAFYEGYYANKGIKIIKGTVAVGF  230 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~--------~~-----~~~~~~~l~~~l~~~GV~v~~~~~v~~i  230 (433)
                      +++|||+|++|+++|..|.+.|.+|+++++.+..+..        .+     ++++.+.+.+.+++.||+++++ +|+++
T Consensus         3 ~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~v~~~-~v~~i   81 (180)
T 2ywl_A            3 DVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKGVSRVPNYPGLLDEPSGEELLRRLEAHARRYGAEVRPG-VVKGV   81 (180)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTTTTCSCCCCSTTCTTCCCHHHHHHHHHHHHHHTTCEEEEC-CCCEE
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccCchhhhccCCCcCCCCHHHHHHHHHHHHHHcCCEEEeC-EEEEE
Confidence            6899999999999999999999999999988765521        12     4788999999999999999999 99999


Q ss_pred             EecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhhhcccccCCCcEEeCCCCCCCCCCeEEcCccccccccccCcccc
Q 013952          231 TTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRR  310 (433)
Q Consensus       231 ~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~~~~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~  310 (433)
                      +.++++  ..+.+.+| ++++|.||+|+|.+|+. .-..+++.++|.+.||+++||+.|+|||+|||+..+.        
T Consensus        82 ~~~~~~--~~v~~~~g-~i~ad~vI~A~G~~~~~-~~~~g~~~~~g~i~vd~~~~t~~~~i~a~GD~~~~~~--------  149 (180)
T 2ywl_A           82 RDMGGV--FEVETEEG-VEKAERLLLCTHKDPTL-PSLLGLTRRGAYIDTDEGGRTSYPRVYAAGVARGKVP--------  149 (180)
T ss_dssp             EECSSS--EEEECSSC-EEEEEEEEECCTTCCHH-HHHHTCCEETTEECCCTTCBCSSTTEEECGGGGTCCS--------
T ss_pred             EEcCCE--EEEEECCC-EEEECEEEECCCCCCCc-cccCCCCccCceEEeCCCCCcCCCCEEEeecccCcch--------
Confidence            873333  57888888 89999999999999864 1223454557789999999999999999999998753        


Q ss_pred             cccHHHHHHHHHHHHHHHhccCCCC
Q 013952          311 VEHVDHARKSAEQAVKTIMATEGGK  335 (433)
Q Consensus       311 ~~~~~~A~~~g~~aa~~i~~~~~~~  335 (433)
                       +++..|..+|+.+|.||.+...+.
T Consensus       150 -~~~~~A~~~g~~aa~~i~~~~~~~  173 (180)
T 2ywl_A          150 -GHAIISAGDGAYVAVHLVSDLRGE  173 (180)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             -hhHHHHHHhHHHHHHHHHHHhhhc
Confidence             367889999999999998765443

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=99.83  E-value=7.7e-19  Score=172.46  Aligned_cols=286  Identities=13%  Similarity=0.067  Sum_probs=160.9

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCC-----------CcEEEEcCC-CCCCCCCCc-cccccCCCCCCCC-----CCcc
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKP-----------GELAIISKE-VAPYERPAL-SKAYLFPEGTARL-----PGFH   66 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~-----------~~V~lie~~-~~~~~~~~~-~~~~~~~~~~~~~-----~~~~   66 (433)
                      .|||||||+||+||++|..|.+.+.+.           ...+.+|+. ...|...++ .+.-+.......+     |..+
T Consensus        39 i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~f~Wh~g~~~p~~~~q~~fl~Dlvtl~~P~s~  118 (501)
T 4b63_A           39 LHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQFAWHSGMLVPGSKMQISFIKDLATLRDPRSS  118 (501)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSSCCSSGGGCCTTCBCSSCGGGSSSTTTCTTCT
T ss_pred             cCcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCCCCcCCCCCCCCccccccchhhhccccCCCCc
Confidence            489999999999999999998865431           235677777 333332211 1100000000000     0000


Q ss_pred             c---------------ccCCC-------CCCCCHhHHHhCCcEEEeCceEEEEECCC----------CEEEeCCC-----
Q 013952           67 V---------------CVGSG-------GERLLPEWYKEKGIELILSTEIVRADIAS----------KTLLSATG-----  109 (433)
Q Consensus        67 ~---------------~~~~~-------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~----------~~v~~~~~-----  109 (433)
                      +               .....       ...++....++.+..+.++++|+++.+..          .+|++.++     
T Consensus       119 ~sf~~yl~~~~rl~~f~~~~~~~p~r~E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~  198 (501)
T 4b63_A          119 FTFLNYLHQKGRLIHFTNLSTFLPARLEFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEI  198 (501)
T ss_dssp             TSHHHHHHHHTCHHHHHTTCCSCCBHHHHHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCE
T ss_pred             cchHHHHHHhCCccCCccccCCCCCHHHHHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCceE
Confidence            0               00000       00111222234566788888999886432          24555433     


Q ss_pred             cEEecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHH--HhcCCCcEEEECCCHHHHHHHHHHHhC--C
Q 013952          110 LIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAI--KAKKNGKAVVVGGGYIGLELSAALKIN--N  185 (433)
Q Consensus       110 ~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~--~~~~~~~v~ViG~G~~g~e~a~~l~~~--g  185 (433)
                      +++.+++||+|||..|..|..   .+. ...+++.....+...   .+  ....+|+|+|||+|.+|+|++..|++.  +
T Consensus       199 ~~~~ar~vVlatG~~P~iP~~---~~~-~g~v~Hss~y~~~~~---~~~~~~~~gKrV~VVG~G~SA~ei~~~L~~~~~~  271 (501)
T 4b63_A          199 SARRTRKVVIAIGGTAKMPSG---LPQ-DPRIIHSSKYCTTLP---ALLKDKSKPYNIAVLGSGQSAAEIFHDLQKRYPN  271 (501)
T ss_dssp             EEEEEEEEEECCCCEECCCTT---SCC-CTTEEEGGGHHHHHH---HHSCCTTSCCEEEEECCSHHHHHHHHHHHHHSTT
T ss_pred             EEEEeCEEEECcCCCCCCCCC---CCC-Ccceeeccccccchh---hccccccCCcEEEEECCcHHHHHHHHHHHhcCCC
Confidence            368999999999998887764   332 246777655443211   11  123689999999999999999999864  6


Q ss_pred             CeEEEEccCCccCCCC--------CCHHH-----------HH--------------------HHHH-HHHh---------
Q 013952          186 IDVSMVYPEPWCMPRL--------FTADI-----------AA--------------------FYEG-YYAN---------  216 (433)
Q Consensus       186 ~~V~li~~~~~~~~~~--------~~~~~-----------~~--------------------~l~~-~l~~---------  216 (433)
                      .+|+++.|.+.+.+..        +.++.           .+                    .+.+ .+++         
T Consensus       272 ~~v~~~~R~~~~~p~~~s~~~~~~f~p~~~~~f~~l~~~~r~~~~~~~~~~~~~~v~~~li~~i~~~~y~~~~~~~~~~~  351 (501)
T 4b63_A          272 SRTTLIMRDSAMRPSDDSPFVNEIFNPERVDKFYSQSAAERQRSLLADKATNYSVVRLELIEEIYNDMYLQRVKNPDETQ  351 (501)
T ss_dssp             CEEEEECSSSSCCBCCCCTTGGGGGSTTHHHHHHTSCHHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCSCGGG
T ss_pred             ceEEEEeCCCccccccccccchhhcCHHHHHHHHhCCHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhccCCCcccc
Confidence            8999999987654321        11111           11                    1111 1111         


Q ss_pred             cCcEEEcCCeEEEEEecCC-CcE-----------EEEEeCCCcEEECCEEEEcccCccChh-hhhc---cccc-CCCcEE
Q 013952          217 KGIKIIKGTVAVGFTTNAD-GEV-----------KEVKLKDGRTLEADIVVVGVGGRPLIS-LFKG---QVAE-NKGGIE  279 (433)
Q Consensus       217 ~GV~v~~~~~v~~i~~~~~-g~~-----------~~v~~~~g~~i~~d~vi~a~G~~p~~~-~~~~---~~~~-~~g~i~  279 (433)
                      ....+..+..+..+..... +++           ..+.+.+|+++++|.||+|||++|+.. ++..   .+.. .+|.+.
T Consensus       352 ~~~~l~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~v~~~dg~~~~~D~VI~ATGy~~~~p~~L~~~~~~l~~d~~g~~~  431 (501)
T 4b63_A          352 WQHRILPERKITRVEHHGPQSRMRIHLKSSKPESEGAANDVKETLEVDALMVATGYNRNAHERLLSKVQHLRPTGQDQWK  431 (501)
T ss_dssp             CSSEEECSEEEEEEECCSSSSCEEEEEEESCC--------CCCEEEESEEEECCCEECCTHHHHTGGGGGGSSTTCCSCC
T ss_pred             cceeecCCcceeeeeecCCCCeEEEEeeeeEEeCCeeEeCCCeEEECCEEEECcCCCCCCcchhcchhhhcCcCcCCCee
Confidence            1124555655655543221 111           234567788999999999999998864 2222   2222 467788


Q ss_pred             eCCCCCC--------CCCCeEEcCcc
Q 013952          280 TDDFFKT--------SADDVYAVGDV  297 (433)
Q Consensus       280 vd~~~~t--------~~~~vfa~Gd~  297 (433)
                      |+.+++.        ..++||+.|-+
T Consensus       432 v~rdy~~~~~~~~~~~~~~i~~qg~~  457 (501)
T 4b63_A          432 PHRDYRVEMDPSKVSSEAGIWLQGCN  457 (501)
T ss_dssp             BCTTSBBCCCTTTBCTTCEEEECSCC
T ss_pred             eCCCcEEeecCCccCCCceEEecCCC
Confidence            8866542        24679999954

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=99.73  E-value=3.9e-19  Score=173.28  Aligned_cols=193  Identities=13%  Similarity=0.097  Sum_probs=115.0

Q ss_pred             HHHhCCcEEEeCceEEEEECCCCEE---EeC-CCcEEecceEEEccCCCccccCCCCC-CCCCCCCEEEecCHHHHHHHH
Q 013952           80 WYKEKGIELILSTEIVRADIASKTL---LSA-TGLIFKYQILVIATGSTVLRLTDFGV-EGADAKNIFYLREIDDADKLV  154 (433)
Q Consensus        80 ~~~~~~v~~~~~~~v~~i~~~~~~v---~~~-~~~~~~~d~lvlAtG~~~~~~~~~~~-~g~~~~~v~~~~~~~~~~~~~  154 (433)
                      .+++.+++++.++.+ .+..++..+   ... ++.++.+|.+|+|||+.+..++...- ++...      +.+.-+.+.-
T Consensus       128 ~~~~~gv~i~~~~~v-~l~~~~~~v~Gv~v~~~~g~~~a~~VVlAtGg~~~~~~~~~~~~~~tG------dgi~~a~~aG  200 (472)
T 2e5v_A          128 LAREEGIPIIEDRLV-EIRVKDGKVTGFVTEKRGLVEDVDKLVLATGGYSYLYEYSSTQSTNIG------DGMAIAFKAG  200 (472)
T ss_dssp             HHHHTTCCEECCCEE-EEEEETTEEEEEEETTTEEECCCSEEEECCCCCGGGSSSBSSCTTCSC------HHHHHHHHTT
T ss_pred             HHHhCCCEEEECcEE-EEEEeCCEEEEEEEEeCCCeEEeeeEEECCCCCcccCccccCCCCCch------HHHHHHHHcC
Confidence            345679999999889 887665543   332 23357899999999998866542110 11110      0010010000


Q ss_pred             HHHHhc---CC-CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHH--------HHHHHHHHHHhcCcEEE
Q 013952          155 EAIKAK---KN-GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTAD--------IAAFYEGYYANKGIKII  222 (433)
Q Consensus       155 ~~~~~~---~~-~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~--------~~~~l~~~l~~~GV~v~  222 (433)
                      ..+.+.   +. ..++++|+|  +++++..+...|..+ +..+.+++++.+ +++        +.+.+.+.+++.|. ++
T Consensus       201 a~~~d~e~~q~~p~~~~~ggg--~~~~ae~~~~~G~~~-v~~~g~rf~~~~-~~~~el~~rd~v~~~i~~~~~~~~~-v~  275 (472)
T 2e5v_A          201 TILADMEFVQFHPTVTSLDGE--VFLLTETLRGEGAQI-INENGERFLFNY-DKRGELAPRDILSRAIYIEMLKGHK-VF  275 (472)
T ss_dssp             CCEECTTCEEEEEEEECGGGC--CEECCTHHHHTTCEE-EETTCCCGGGGT-CTTGGGSCHHHHHHHHHHHHHHTCC-EE
T ss_pred             CCEeCCcceEEEeEEEccCCC--ceeeehhhcCCceEE-ECCCCCCCCccC-CcccCcCchhHHHHHHHHHHHhCCc-EE
Confidence            000000   11 133455666  888888888889877 778888888653 332        35566666666653 33


Q ss_pred             cCCeEEEEEecCCCcEEEEEeCCCcEEE-CCEEEEcccCccChhhhhcc--cccCCCcEEeCCCCCCCCCCeEEcCcccc
Q 013952          223 KGTVAVGFTTNADGEVKEVKLKDGRTLE-ADIVVVGVGGRPLISLFKGQ--VAENKGGIETDDFFKTSADDVYAVGDVAT  299 (433)
Q Consensus       223 ~~~~v~~i~~~~~g~~~~v~~~~g~~i~-~d~vi~a~G~~p~~~~~~~~--~~~~~g~i~vd~~~~t~~~~vfa~Gd~~~  299 (433)
                      ++...  +    +.      +.  +.++ .+.++++.|..|+ ++++..  .....|+|.||+++||++|+|||+|||++
T Consensus       276 ld~~~--~----~~------~~--~~~~~~~~~~~~~G~dp~-~~i~v~p~~~~~~GGI~vd~~~~t~ipgLyAaGd~a~  340 (472)
T 2e5v_A          276 IDLSK--I----ED------FE--RKFPVVAKYLARHGHNYK-VKIPIFPAAHFVDGGIRVNIRGESNIVNLYAIGEVSD  340 (472)
T ss_dssp             EECTT--C----TT------HH--HHCHHHHHHHHHTTCCTT-SCEECEEEEEEESCEEECCTTCBCSSBTEEECGGGEE
T ss_pred             Eeccc--h----HH------HH--HHhHHHHHHHHHhCcCcc-cceEeehhhceeCCCeEECCCCccccCCEEecchhcc
Confidence            22110  0    00      00  1232 3667778899998 554321  12257999999999999999999999998

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=99.63  E-value=1.5e-15  Score=133.77  Aligned_cols=156  Identities=15%  Similarity=0.165  Sum_probs=112.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc-----------------cCCCC------CCHHHHHHHHHHHHhc-C
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW-----------------CMPRL------FTADIAAFYEGYYANK-G  218 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~-----------------~~~~~------~~~~~~~~l~~~l~~~-G  218 (433)
                      ..|+|||+|+.|+++|..|++.|.+|+++++...                 +...+      ....+.+.+.+.+++. |
T Consensus         4 ~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~l~~~~~~~~g   83 (232)
T 2cul_A            4 YQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLRP   83 (232)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCTT
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCCcccCccccccchhhHHhhhccCCCCCHHHHHHHHHHHHHcCCC
Confidence            4799999999999999999999999999988621                 00000      1236777888888887 9


Q ss_pred             cEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChh--------------------hh----hcccccC
Q 013952          219 IKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS--------------------LF----KGQVAEN  274 (433)
Q Consensus       219 V~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~--------------------~~----~~~~~~~  274 (433)
                      ++++ +++|+++.. +++++..+.+.+|+++++|.||+|+|..++..                    +.    +.++...
T Consensus        84 v~i~-~~~v~~i~~-~~~~v~~v~~~~g~~i~a~~VV~A~G~~s~~~~~~G~~~~~~g~~g~~~~~~l~~~l~~~g~~~~  161 (232)
T 2cul_A           84 LHLF-QATATGLLL-EGNRVVGVRTWEGPPARGEKVVLAVGSFLGARLFLGGVVEEAGRLSEASYPDLLEDLSRLGFRFV  161 (232)
T ss_dssp             EEEE-ECCEEEEEE-ETTEEEEEEETTSCCEECSEEEECCTTCSSCEEEETTEEESEEETTEECCSHHHHHHHHTTCCEE
T ss_pred             cEEE-EeEEEEEEE-eCCEEEEEEECCCCEEECCEEEECCCCChhhceecCCccCCCCCCcccchhhhCHHHHhCCCeEE
Confidence            9999 568999986 35666678888888899999999999844322                    21    1122221


Q ss_pred             CCc----------------EEeC-------CCCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhcc
Q 013952          275 KGG----------------IETD-------DFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMAT  331 (433)
Q Consensus       275 ~g~----------------i~vd-------~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~  331 (433)
                      .+.                ..+.       ...+|++|+||++|||+ ..          ..+..|..||+.+|.+|...
T Consensus       162 ~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~t~~p~iya~G~~a-~~----------g~~~~~~~~g~~~a~~i~~~  230 (232)
T 2cul_A          162 EREGEVPETPSTPGYRVRYLAFHPEEWEEKTFRLKRLEGLYAVGLCV-RE----------GDYARMSEEGKRLAEHLLHE  230 (232)
T ss_dssp             EEEEEEC-----CCEEEEEEEECGGGEETTTTEETTSBSEEECGGGT-SC----------CCHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccCcCCCCCCccCchhhcccCCCCCccccccccccceeeeecc-cC----------ccHHHHHHHHHHHHHHHHhh
Confidence            100                0111       01236999999999999 43          35677899999999999864

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=99.59  E-value=3.2e-16  Score=149.30  Aligned_cols=120  Identities=17%  Similarity=0.254  Sum_probs=73.7

Q ss_pred             CCCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--------CCCCccc------cccCCCCCCCC----
Q 013952            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPY--------ERPALSK------AYLFPEGTARL----   62 (433)
Q Consensus         1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~--------~~~~~~~------~~~~~~~~~~~----   62 (433)
                      || +++||+|||||++|+++|..|+++|.+   |+|+|+...+.        .+|.+..      .++.. .....    
T Consensus         1 MM-~~~dViIIGgG~aGl~aA~~la~~G~~---V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~-~~~~~~~~l   75 (401)
T 2gqf_A            1 MS-QYSENIIIGAGAAGLFCAAQLAKLGKS---VTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQ-NPHFVKSAL   75 (401)
T ss_dssp             CE-EECSEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECS-CTTSTHHHH
T ss_pred             CC-CCCCEEEECCcHHHHHHHHHHHhCCCC---EEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccC-CHHHHHHHH
Confidence            66 469999999999999999999999987   99999982110        1111110      00000 00000    


Q ss_pred             --------------CCccccc-----------CCCCCCCCHhHHHhCCcEEEeCceEEEEECC----CC--EEEeCCCcE
Q 013952           63 --------------PGFHVCV-----------GSGGERLLPEWYKEKGIELILSTEIVRADIA----SK--TLLSATGLI  111 (433)
Q Consensus        63 --------------~~~~~~~-----------~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~----~~--~v~~~~~~~  111 (433)
                                    .+.....           .......+.+.+++.|++++.++.|..+..+    +.  .|.+.++ +
T Consensus        76 ~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~~v~~~~g-~  154 (401)
T 2gqf_A           76 ARYTNWDFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNST-Q  154 (401)
T ss_dssp             HHSCHHHHHHHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTE-E
T ss_pred             HhCCHHHHHHHHHhCCCceEECcCCEEccCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeEEEEECCC-E
Confidence                          0000000           0000112334456679999999999988754    33  3555555 7


Q ss_pred             EecceEEEccCCCcc
Q 013952          112 FKYQILVIATGSTVL  126 (433)
Q Consensus       112 ~~~d~lvlAtG~~~~  126 (433)
                      +++|+||+|||+.+.
T Consensus       155 i~ad~VVlAtG~~s~  169 (401)
T 2gqf_A          155 WQCKNLIVATGGLSM  169 (401)
T ss_dssp             EEESEEEECCCCSSC
T ss_pred             EECCEEEECCCCccC
Confidence            999999999998773

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=99.35  E-value=1.1e-12  Score=126.59  Aligned_cols=94  Identities=19%  Similarity=0.231  Sum_probs=71.6

Q ss_pred             CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEccc--------CccChhhhhc-ccc-
Q 013952          203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVG--------GRPLISLFKG-QVA-  272 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G--------~~p~~~~~~~-~~~-  272 (433)
                      +..+...+.+.+++.| +++++++|++|+.++++  ..|.+.+|++++||.||+|+|        +.|+...... .+. 
T Consensus       203 ~~g~~~l~~~~~~~~g-~i~~~~~V~~i~~~~~~--v~v~~~~g~~~~ad~vi~a~~~~~l~~i~~~p~l~~~~~~~~~~  279 (431)
T 3k7m_X          203 SNGSADLVDAMSQEIP-EIRLQTVVTGIDQSGDV--VNVTVKDGHAFQAHSVIVATPMNTWRRIVFTPALPERRRSVIEE  279 (431)
T ss_dssp             TTCTHHHHHHHHTTCS-CEESSCCEEEEECSSSS--EEEEETTSCCEEEEEEEECSCGGGGGGSEEESCCCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHhhCC-ceEeCCEEEEEEEcCCe--EEEEECCCCEEEeCEEEEecCcchHhheeeCCCCCHHHHHHHHh
Confidence            4445556666677778 99999999999874333  468888888899999999999        8888764422 121 


Q ss_pred             -cCCCcEEeCCCCCCCCCCeEEcCcccc
Q 013952          273 -ENKGGIETDDFFKTSADDVYAVGDVAT  299 (433)
Q Consensus       273 -~~~g~i~vd~~~~t~~~~vfa~Gd~~~  299 (433)
                       .....++|+..++++.+++|+.||+..
T Consensus       280 ~~~~~~~kv~~~~~~~~~~i~~~~d~~~  307 (431)
T 3k7m_X          280 GHGGQGLKILIHVRGAEAGIECVGDGIF  307 (431)
T ss_dssp             CCCCCEEEEEEEEESCCTTEEEEBSSSS
T ss_pred             CCCcceEEEEEEECCCCcCceEcCCCCE
Confidence             134569999999999999999999843

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=99.35  E-value=3.4e-12  Score=115.89  Aligned_cols=168  Identities=15%  Similarity=0.104  Sum_probs=117.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhC-CCeEEEEccCCccCCC-------------------------------------CCC
Q 013952          162 NGKAVVVGGGYIGLELSAALKIN-NIDVSMVYPEPWCMPR-------------------------------------LFT  203 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~-g~~V~li~~~~~~~~~-------------------------------------~~~  203 (433)
                      ...|+|||+|++|+.+|..|++. |.+|+++++.+.+...                                     ...
T Consensus        39 ~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~  118 (284)
T 1rp0_A           39 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHA  118 (284)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCH
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCceecCCcchHHHHcCcHHHHHHHHcCCCcccCCCEEEecCH
Confidence            35799999999999999999997 9999999987643210                                     012


Q ss_pred             HHHHHHHHHHHHh-cCcEEEcCCeEEEEEecCCCcEEEEEeC---------CC-----cEEECCEEEEcccCccChhhhh
Q 013952          204 ADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKLK---------DG-----RTLEADIVVVGVGGRPLISLFK  268 (433)
Q Consensus       204 ~~~~~~l~~~l~~-~GV~v~~~~~v~~i~~~~~g~~~~v~~~---------~g-----~~i~~d~vi~a~G~~p~~~~~~  268 (433)
                      .++...+.+.+.+ .||+++++++|.++.. +++++..+.+.         ++     .++++|.||+|+|..++...+.
T Consensus       119 ~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~-~~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~s~~~~~~  197 (284)
T 1rp0_A          119 ALFTSTIMSKLLARPNVKLFNAVAAEDLIV-KGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGATG  197 (284)
T ss_dssp             HHHHHHHHHHHHTSTTEEEEETEEEEEEEE-ETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSSTTTTHH
T ss_pred             HHHHHHHHHHHHhcCCCEEEcCcEEEEEEe-cCCeEEEEEEeccccccccCccccCceEEEECCEEEECCCCchHHHHHH
Confidence            4555566666665 7999999999999986 35555566552         22     5799999999999877653221


Q ss_pred             ------cc--ccc-CCCcEEeCC-------CCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccC
Q 013952          269 ------GQ--VAE-NKGGIETDD-------FFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE  332 (433)
Q Consensus       269 ------~~--~~~-~~g~i~vd~-------~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~  332 (433)
                            .+  ... ...++.+|.       +.+++.|++|++|+++...   ++.++..+.+..+..+|+.+|.+|...+
T Consensus       198 ~~~~~~~g~~~~v~~~~g~~~~~~~~~~v~~~~~~~p~i~a~G~~~~~~---~g~~~~gp~~~~~~~sG~~~a~~i~~~l  274 (284)
T 1rp0_A          198 VKRLKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEI---DGAPRMGPTFGAMMISGQKAGQLALKAL  274 (284)
T ss_dssp             HHHHHHTTSSSCCCCCEEECHHHHHHHHHHHCEEEETTEEECTHHHHHH---HTCEECCSCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHhhhccCCCCcCCcCCchhhhhhHHHhhccccccCCEEEEeeehhhh---cCCCCcChHHHHHHHhHHHHHHHHHHHh
Confidence                  11  111 122333332       3456789999999986542   2333333567788899999999998865


Q ss_pred             C
Q 013952          333 G  333 (433)
Q Consensus       333 ~  333 (433)
                      .
T Consensus       275 ~  275 (284)
T 1rp0_A          275 G  275 (284)
T ss_dssp             T
T ss_pred             h
Confidence            4

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=99.27  E-value=6.1e-11  Score=116.91  Aligned_cols=156  Identities=17%  Similarity=0.175  Sum_probs=94.1

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-C-CCCCCCCccccccCCC----CCCCCCC----------ccc
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-V-APYERPALSKAYLFPE----GTARLPG----------FHV   67 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~-~~~~~~~~~~~~~~~~----~~~~~~~----------~~~   67 (433)
                      ..+||||||||+||++||..|++.|.+   |+|||+. . .....|..+.+.....    ....+.+          ..+
T Consensus        26 ~~yDVIVIGgG~AGl~AAlalAr~G~k---VlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~~~d~~gi~f  102 (637)
T 2zxi_A           26 DEFDVVVIGGGHAGIEAALAAARMGAK---TAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQF  102 (637)
T ss_dssp             GCCSEEEECCSHHHHHHHHHHHHTTCC---EEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHHHHHHHEEEE
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCC---EEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHHHhhhcccce
Confidence            358999999999999999999999987   9999987 2 1111222211110000    0000000          000


Q ss_pred             c-----cCC------------CCCCCCHhHHHh-CCcEEEeCceEEEEECCCCE---EEeCCCcEEecceEEEccCCCcc
Q 013952           68 C-----VGS------------GGERLLPEWYKE-KGIELILSTEIVRADIASKT---LLSATGLIFKYQILVIATGSTVL  126 (433)
Q Consensus        68 ~-----~~~------------~~~~~~~~~~~~-~~v~~~~~~~v~~i~~~~~~---v~~~~~~~~~~d~lvlAtG~~~~  126 (433)
                      .     .+.            .....+.+.+++ .+++++. ..|..+..++..   |.+.+|.++.++.+|+|||+.+.
T Consensus       103 ~~l~~~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI~~-~~Vt~L~~e~g~V~GV~t~dG~~i~AdaVVLATG~~s~  181 (637)
T 2zxi_A          103 KMLNTRKGKAVQSPRAQADKKRYREYMKKVCENQENLYIKQ-EEVVDIIVKNNQVVGVRTNLGVEYKTKAVVVTTGTFLN  181 (637)
T ss_dssp             EEESTTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEEE-SCEEEEEESSSBEEEEEETTSCEEECSEEEECCTTCBT
T ss_pred             eecccccCccccchhhhCCHHHHHHHHHHHHHhCCCCEEEE-eEEEEEEecCCEEEEEEECCCcEEEeCEEEEccCCCcc
Confidence            0     000            000112233445 5899965 589888765543   66778889999999999999876


Q ss_pred             ccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEE
Q 013952          127 RLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMV  191 (433)
Q Consensus       127 ~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li  191 (433)
                      .+.   ++|..   .+.                  +.+    .|+.++.+++..|.+.|.++..+
T Consensus       182 ~~~---~~G~~---~~~------------------~Gr----~G~~~A~~la~~L~~lG~~v~~l  218 (637)
T 2zxi_A          182 GVI---YIGDK---MIP------------------GGR----LGEPRSEGLSDFYRRFDFPLIRF  218 (637)
T ss_dssp             CEE---EETTE---EEE------------------CSB----TTBCCBCTHHHHHHHTTCCCEEE
T ss_pred             Cce---eccce---ecC------------------CCC----CCchhHHHHHHHHHhcCCceEEe
Confidence            554   34432   111                  122    23567788999999998877654

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=99.22  E-value=6.1e-10  Score=105.90  Aligned_cols=57  Identities=18%  Similarity=0.303  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC-CC--cEEECCEEEEcccCc
Q 013952          204 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK-DG--RTLEADIVVVGVGGR  261 (433)
Q Consensus       204 ~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~-~g--~~i~~d~vi~a~G~~  261 (433)
                      ..+.+.+.+.+++.|+++++++++..+.. +++.+..+... ++  .++.+|.||-|.|..
T Consensus       102 ~~~~~~L~~~a~~~G~~~~~~~~v~~~~~-~~~~~~~v~~~~~~~~~~~~a~~vIgAdG~~  161 (397)
T 3oz2_A          102 DKFDKHLAALAAKAGADVWVKSPALGVIK-ENGKVAGAKIRHNNEIVDVRAKMVIAADGFE  161 (397)
T ss_dssp             HHHHHHHHHHHHHHTCEEESSCCEEEEEE-ETTEEEEEEEEETTEEEEEEEEEEEECCCTT
T ss_pred             HHHHHHHHHHHHhcCcEEeeeeeeeeeee-ccceeeeeeecccccceEEEEeEEEeCCccc
Confidence            34555667777888999999999999876 45555444432 23  368899999999963

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=99.22  E-value=1.6e-10  Score=108.94  Aligned_cols=59  Identities=15%  Similarity=0.245  Sum_probs=49.3

Q ss_pred             CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCC--cEEECCEEEEcccCcc
Q 013952          203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG--RTLEADIVVVGVGGRP  262 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g--~~i~~d~vi~a~G~~p  262 (433)
                      +..+.+.+.+.+++.|++++++++|+++..++++ ...|.+.+|  .++.+|.||+|+|...
T Consensus       149 ~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~-~~~v~~~~g~~~~~~a~~VV~A~G~~s  209 (369)
T 3dme_A          149 SHALMLAYQGDAESDGAQLVFHTPLIAGRVRPEG-GFELDFGGAEPMTLSCRVLINAAGLHA  209 (369)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEECTTS-SEEEEECTTSCEEEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCc-eEEEEECCCceeEEEeCEEEECCCcch
Confidence            5688889999999999999999999999874333 245788887  4899999999999764

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.19  E-value=4.7e-11  Score=100.55  Aligned_cols=109  Identities=18%  Similarity=0.196  Sum_probs=74.5

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccc-cCCCCCCCCHhHHHhC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVC-VGSGGERLLPEWYKEK   84 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   84 (433)
                      +|++|||||++|+.+|..|++.|.+   |+|+|+......+..         .....++++.. .+......+.+.+++.
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g~~---v~lie~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~l~~~~~~~   69 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAGLK---VLVLDGGRSKVKGVS---------RVPNYPGLLDEPSGEELLRRLEAHARRY   69 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCC---EEEEECSCCTTTTCS---------CCCCSTTCTTCCCHHHHHHHHHHHHHHT
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCc---EEEEeCCCCcccCch---------hhhccCCCcCCCCHHHHHHHHHHHHHHc
Confidence            6999999999999999999999987   999999821111100         00111221000 0011123345566778


Q ss_pred             CcEEEeCceEEEEECCCC--EEEeCCCcEEecceEEEccCCCcccc
Q 013952           85 GIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRL  128 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~~~  128 (433)
                      +++++.+ .+..++.++.  .+.+.++ ++++|.+|+|+|..|..+
T Consensus        70 gv~v~~~-~v~~i~~~~~~~~v~~~~g-~i~ad~vI~A~G~~~~~~  113 (180)
T 2ywl_A           70 GAEVRPG-VVKGVRDMGGVFEVETEEG-VEKAERLLLCTHKDPTLP  113 (180)
T ss_dssp             TCEEEEC-CCCEEEECSSSEEEECSSC-EEEEEEEEECCTTCCHHH
T ss_pred             CCEEEeC-EEEEEEEcCCEEEEEECCC-EEEECEEEECCCCCCCcc
Confidence            9999999 9988886543  5666777 899999999999988543

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=99.16  E-value=2.8e-11  Score=121.07  Aligned_cols=37  Identities=32%  Similarity=0.306  Sum_probs=33.1

Q ss_pred             CCCCcCeEEEECCCHHHHHHHHHHHHcC--CCCCcEEEEcCC
Q 013952            1 MAEKSFKYVILGGGVSAGYAAREFAKQG--VKPGELAIISKE   40 (433)
Q Consensus         1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g--~~~~~V~lie~~   40 (433)
                      |....+||||||||+||++||..|++.|  .+   |+|||+.
T Consensus         1 m~~~~~DVvIVG~G~AGl~aAl~la~~G~~~~---V~vlEk~   39 (602)
T 1kf6_A            1 MQTFQADLAIVGAGGAGLRAAIAAAQANPNAK---IALISKV   39 (602)
T ss_dssp             CEEEECSEEEECCSHHHHHHHHHHHHHCTTCC---EEEEESS
T ss_pred             CCcccCCEEEECCCHHHHHHHHHHHhcCCCCc---EEEEeCC
Confidence            4444689999999999999999999998  76   9999997

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=99.15  E-value=3e-11  Score=115.37  Aligned_cols=120  Identities=24%  Similarity=0.306  Sum_probs=71.6

Q ss_pred             CCCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--------CCCCccc------cccCCCCCCCC----
Q 013952            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPY--------ERPALSK------AYLFPEGTARL----   62 (433)
Q Consensus         1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~--------~~~~~~~------~~~~~~~~~~~----   62 (433)
                      ||+.++||+|||||++|++||..|+++|.+   |+|+|+...+.        .++.+..      .++. ......    
T Consensus        23 M~~~~~dViIIGgG~AGl~aA~~La~~G~~---V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~-~~~~~~~~~l   98 (417)
T 3v76_A           23 MVAEKQDVVIIGAGAAGMMCAIEAGKRGRR---VLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLS-GNPHFCKSAL   98 (417)
T ss_dssp             -----CCEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEE-SSTTTTHHHH
T ss_pred             ccCCCCCEEEECcCHHHHHHHHHHHHCCCc---EEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhh-cCHHHHHHHH
Confidence            677789999999999999999999999987   99999982111        0111000      0000 000000    


Q ss_pred             --------------CCcccccCC-----------CCCCCCHhHHHhCCcEEEeCceEEEEECCCC--EEEeCCCcEEecc
Q 013952           63 --------------PGFHVCVGS-----------GGERLLPEWYKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQ  115 (433)
Q Consensus        63 --------------~~~~~~~~~-----------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d  115 (433)
                                    .+.......           .....+.+.+++.|++++.++.|..+..++.  .|.+.++ ++++|
T Consensus        99 ~~~~~~~~~~~~~~~Gi~~~~~~~g~~~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad  177 (417)
T 3v76_A           99 ARYRPQDFVALVERHGIGWHEKTLGQLFCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTASGFRVTTSAG-TVDAA  177 (417)
T ss_dssp             HHSCHHHHHHHHHHTTCCEEECSTTEEEESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTE-EEEES
T ss_pred             HhcCHHHHHHHHHHcCCCcEEeeCCEEeeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCc-EEEee
Confidence                          000000000           0011233445567999999999999876554  4556666 89999


Q ss_pred             eEEEccCCCc
Q 013952          116 ILVIATGSTV  125 (433)
Q Consensus       116 ~lvlAtG~~~  125 (433)
                      +||+|||..+
T Consensus       178 ~VIlAtG~~S  187 (417)
T 3v76_A          178 SLVVASGGKS  187 (417)
T ss_dssp             EEEECCCCSS
T ss_pred             EEEECCCCcc
Confidence            9999999875

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=99.11  E-value=1.3e-10  Score=115.02  Aligned_cols=157  Identities=16%  Similarity=0.199  Sum_probs=92.7

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-C-CCCCCCCccccccCCC----CCCCCCC----------ccc
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-V-APYERPALSKAYLFPE----GTARLPG----------FHV   67 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~-~~~~~~~~~~~~~~~~----~~~~~~~----------~~~   67 (433)
                      ..+||||||||+||++||..|++.|.+   |+|||+. . .....|..+.+.....    ....+.+          ..+
T Consensus        27 ~~yDVIVIGgG~AGl~AAlaLAr~G~k---VlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi~f  103 (651)
T 3ces_A           27 DPFDVIIIGGGHAGTEAAMAAARMGQQ---TLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQF  103 (651)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEEE
T ss_pred             CcCCEEEECChHHHHHHHHHHHhCCCC---EEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhhhcccch
Confidence            358999999999999999999999987   9999987 2 2222222221111000    0000000          000


Q ss_pred             c-----cCC------------CCCCCCHhHHHh-CCcEEEeCceEEEEECCCC---EEEeCCCcEEecceEEEccCCCcc
Q 013952           68 C-----VGS------------GGERLLPEWYKE-KGIELILSTEIVRADIASK---TLLSATGLIFKYQILVIATGSTVL  126 (433)
Q Consensus        68 ~-----~~~------------~~~~~~~~~~~~-~~v~~~~~~~v~~i~~~~~---~v~~~~~~~~~~d~lvlAtG~~~~  126 (433)
                      .     .+.            .....+.+.+++ .|++++. ..|..+..++.   .|.+.+|.++.+|.||+|||+.+.
T Consensus       104 ~~l~~~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I~~-~~V~~L~~e~g~V~GV~t~dG~~I~Ad~VVLATGt~s~  182 (651)
T 3ces_A          104 RILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQ-QAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLD  182 (651)
T ss_dssp             EEESTTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEEE-CCEEEEEESSSBEEEEEETTSEEEEEEEEEECCSTTTC
T ss_pred             hhhhcccCcccccchhhCCHHHHHHHHHHHHHhCCCCEEEE-EEEEEEEecCCEEEEEEECCCCEEECCEEEEcCCCCcc
Confidence            0     000            000112334445 5899965 58988876554   356677888999999999999876


Q ss_pred             ccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEc
Q 013952          127 RLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVY  192 (433)
Q Consensus       127 ~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~  192 (433)
                      .+.   ++|...   +                  .+.+   +| +.++++++..|.+.|.+|+.+.
T Consensus       183 ~~~---i~G~~~---~------------------~~gr---iG-g~~a~eLA~~L~~lG~~v~~~~  220 (651)
T 3ces_A          183 GKI---HIGLDN---Y------------------SGGR---AG-DPPSIPLSRRLRELPLRVGRLK  220 (651)
T ss_dssp             CEE---ECC--------------------------------------CCHHHHHHHTTTCCEEEEC
T ss_pred             Ccc---ccCccc---C------------------CCCC---cc-chhhhHHHHHHHhcCCeEEEec
Confidence            655   344321   0                  1223   46 7889999999999999998874

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.11  E-value=6e-10  Score=105.60  Aligned_cols=58  Identities=22%  Similarity=0.316  Sum_probs=49.2

Q ss_pred             CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013952          203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP  262 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p  262 (433)
                      +..+.+.+.+.+++.|++++.+++|+++.. +++.+..|.+.+| ++.+|.||+|+|...
T Consensus       148 ~~~l~~~l~~~~~~~Gv~i~~~~~v~~i~~-~~~~v~gv~~~~g-~i~a~~VV~A~G~~s  205 (382)
T 1y56_B          148 PFEATTAFAVKAKEYGAKLLEYTEVKGFLI-ENNEIKGVKTNKG-IIKTGIVVNATNAWA  205 (382)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEE-SSSBEEEEEETTE-EEECSEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHHCCCEEECCceEEEEEE-ECCEEEEEEECCc-EEECCEEEECcchhH
Confidence            567888889999999999999999999987 3455555888877 799999999999764

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=99.06  E-value=2e-09  Score=103.96  Aligned_cols=58  Identities=19%  Similarity=0.260  Sum_probs=50.9

Q ss_pred             CHHHHHHHHHHHHhcCcEEEcCC---eEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013952          203 TADIAAFYEGYYANKGIKIIKGT---VAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR  261 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~GV~v~~~~---~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~  261 (433)
                      +..+...+.+.+++.|+++++++   +|+++.. +++.+..|.+.+|+++.||.||+|+|..
T Consensus       160 ~~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~-~~~~v~gV~t~~G~~i~Ad~VV~AtG~~  220 (438)
T 3dje_A          160 ARNALVAAAREAQRMGVKFVTGTPQGRVVTLIF-ENNDVKGAVTADGKIWRAERTFLCAGAS  220 (438)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEESTTTTCEEEEEE-ETTEEEEEEETTTEEEECSEEEECCGGG
T ss_pred             HHHHHHHHHHHHHhcCCEEEeCCcCceEEEEEe-cCCeEEEEEECCCCEEECCEEEECCCCC
Confidence            46788899999999999999999   9999987 4566767999999889999999999964

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=99.03  E-value=4.1e-10  Score=98.83  Aligned_cols=112  Identities=16%  Similarity=0.135  Sum_probs=70.5

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCccccc----CC---CCCCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVCV----GS---GGERL   76 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~   76 (433)
                      ++||+|||||++|+++|..|++.|.+   |+|||+. .... .+...  .+....   ...+...+    +.   .....
T Consensus         3 ~~dVvVVGgG~aGl~aA~~la~~g~~---v~lie~~~~~~G-~~~~~--~~~~~~---~~~~~~~~~d~~g~~~~~~~~~   73 (232)
T 2cul_A            3 AYQVLIVGAGFSGAETAFWLAQKGVR---VGLLTQSLDAVM-MPFLP--PKPPFP---PGSLLERAYDPKDERVWAFHAR   73 (232)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCC---EEEEESCGGGTT-CCSSC--CCSCCC---TTCHHHHHCCTTCCCHHHHHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCC---EEEEecCCCcCC-cccCc--cccccc---hhhHHhhhccCCCCCHHHHHHH
Confidence            68999999999999999999999987   9999997 2111 00000  000000   00000000    00   00122


Q ss_pred             CHhHHHhC-CcEEEeCceEEEEECCCCE---EEeCCCcEEecceEEEccCCCcc
Q 013952           77 LPEWYKEK-GIELILSTEIVRADIASKT---LLSATGLIFKYQILVIATGSTVL  126 (433)
Q Consensus        77 ~~~~~~~~-~v~~~~~~~v~~i~~~~~~---v~~~~~~~~~~d~lvlAtG~~~~  126 (433)
                      +.+.+++. +++++. +.|.++..++..   |.+.++.++++|++|+|+|....
T Consensus        74 l~~~~~~~~gv~i~~-~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~s~  126 (232)
T 2cul_A           74 AKYLLEGLRPLHLFQ-ATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLG  126 (232)
T ss_dssp             HHHHHHTCTTEEEEE-CCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCSS
T ss_pred             HHHHHHcCCCcEEEE-eEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChh
Confidence            33445565 999985 589888765543   56677878999999999998654

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=99.02  E-value=3e-09  Score=102.15  Aligned_cols=60  Identities=12%  Similarity=0.151  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCc--EEECCEEEEcccCccC
Q 013952          204 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGR--TLEADIVVVGVGGRPL  263 (433)
Q Consensus       204 ~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~--~i~~d~vi~a~G~~p~  263 (433)
                      ..+.+.+.+.+++.|++++++++|+++..++++....+.+.+|+  ++.+|.||.|+|..+.
T Consensus       106 ~~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~~~a~~vV~A~G~~s~  167 (421)
T 3nix_A          106 GNFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIIDASGYGRV  167 (421)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEETTSCEEEEEEEEEEECCGGGCH
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCEEEEEcCEEEECCCCchh
Confidence            45667777888888999999999999987545555677778887  6999999999997763

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=99.01  E-value=5.7e-11  Score=116.38  Aligned_cols=150  Identities=19%  Similarity=0.156  Sum_probs=104.6

Q ss_pred             ecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHH---------HHHHHhcCCCcEEEECCCHHHHHHHHHHHh
Q 013952          113 KYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKL---------VEAIKAKKNGKAVVVGGGYIGLELSAALKI  183 (433)
Q Consensus       113 ~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~---------~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~  183 (433)
                      .||.+++++|++|+.++   +++.+.++++......+..++         ..........+|+|||+|+.|+.+|..|++
T Consensus        37 ~~~~l~~~~g~~~~~~~---i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIVGgG~aGl~aA~~La~  113 (497)
T 2bry_A           37 SFQGLCRALGVESGGGL---SQYHKIKAQLNYWSAKSLWAKLDKRASQPVYQQGQACTNTKCLVVGAGPCGLRAAVELAL  113 (497)
T ss_dssp             HHHHHHHHHTCCTTCHH---HHHHHHHHTCCSTTTHHHHHHHHHHHTSGGGGGGTTTTTCEEEEECCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCCc---EeehhhHHHHHHHHHHHhhhhhhhhhccccccCccccCCCCEEEECccHHHHHHHHHHHH
Confidence            56889999999987665   333222333344444444333         111111235789999999999999999999


Q ss_pred             CCCeEEEEccCCccCCC----CC----------------------------CHHHHHHHHHHHHhcCcEEEcCCeEEEEE
Q 013952          184 NNIDVSMVYPEPWCMPR----LF----------------------------TADIAAFYEGYYANKGIKIIKGTVAVGFT  231 (433)
Q Consensus       184 ~g~~V~li~~~~~~~~~----~~----------------------------~~~~~~~l~~~l~~~GV~v~~~~~v~~i~  231 (433)
                      .|.+|+++++.+.+...    ..                            ..++.+.+.+.+++.||+++++++|.++.
T Consensus       114 ~G~~V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~  193 (497)
T 2bry_A          114 LGARVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIRQLQLLLLKVALLLGVEIHWGVKFTGLQ  193 (497)
T ss_dssp             TTCEEEEEESCSSCCCCCEEECCHHHHHHHHTTTHHHHCTTTTCTTCCEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEE
T ss_pred             CCCeEEEEEeccccCCCCcccCChhHHHHHHHcCCccccccccccccccCCHHHHHHHHHHHHHhCCCEEEeCCEEEEEE
Confidence            99999999987643210    00                            15667778888888999999999999998


Q ss_pred             ecC-CCcEEEEEe--C-CC--cEEECCEEEEcccCccChh
Q 013952          232 TNA-DGEVKEVKL--K-DG--RTLEADIVVVGVGGRPLIS  265 (433)
Q Consensus       232 ~~~-~g~~~~v~~--~-~g--~~i~~d~vi~a~G~~p~~~  265 (433)
                      .++ ++....|.+  . +|  .++.+|.||+|+|.++...
T Consensus       194 ~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~~r  233 (497)
T 2bry_A          194 PPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFVPE  233 (497)
T ss_dssp             CCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCCCT
T ss_pred             EecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCcccc
Confidence            631 233355666  4 55  4699999999999887654

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=99.01  E-value=2.9e-10  Score=111.88  Aligned_cols=57  Identities=14%  Similarity=0.213  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013952          204 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR  261 (433)
Q Consensus       204 ~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~  261 (433)
                      ..+.+.+.+.+++.|++|+++++|++|.. +++++..|++.+|+++.||.||++++..
T Consensus       221 ~~l~~aL~~~~~~~Gg~I~~~~~V~~I~~-~~~~~~gV~~~~g~~~~ad~VV~~a~~~  277 (501)
T 4dgk_A          221 GALVQGMIKLFQDLGGEVVLNARVSHMET-TGNKIEAVHLEDGRRFLTQAVASNADVV  277 (501)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEE-ETTEEEEEEETTSCEEECSCEEECCC--
T ss_pred             cchHHHHHHHHHHhCCceeeecceeEEEe-eCCeEEEEEecCCcEEEcCEEEECCCHH
Confidence            57888899999999999999999999987 5788889999999999999999988753

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=98.97  E-value=5.6e-09  Score=101.01  Aligned_cols=59  Identities=27%  Similarity=0.414  Sum_probs=51.4

Q ss_pred             CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013952          203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP  262 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p  262 (433)
                      ...+.+.+.+.+++.||+++++++|+++.. +++.+..|.+.+|+++.+|.||+|+|..+
T Consensus       133 ~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~-~~~~v~~V~~~~G~~i~Ad~VVlAtGg~s  191 (447)
T 2i0z_A          133 AQSVVDALLTRLKDLGVKIRTNTPVETIEY-ENGQTKAVILQTGEVLETNHVVIAVGGKS  191 (447)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEE-ETTEEEEEEETTCCEEECSCEEECCCCSS
T ss_pred             HHHHHHHHHHHHHHCCCEEEeCcEEEEEEe-cCCcEEEEEECCCCEEECCEEEECCCCCc
Confidence            367888899999999999999999999986 45666788898887899999999999776

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=98.92  E-value=1.2e-07  Score=90.39  Aligned_cols=58  Identities=24%  Similarity=0.350  Sum_probs=49.8

Q ss_pred             CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013952          203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP  262 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p  262 (433)
                      +..+.+.+.+.+++.|++++++++|+++.. +++.+..|.+.+| ++.+|.||+|+|...
T Consensus       173 ~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~-~~~~~~~v~~~~g-~~~a~~vV~a~G~~s  230 (405)
T 2gag_B          173 HDHVAWAFARKANEMGVDIIQNCEVTGFIK-DGEKVTGVKTTRG-TIHAGKVALAGAGHS  230 (405)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEE-SSSBEEEEEETTC-CEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHHCCCEEEcCCeEEEEEE-eCCEEEEEEeCCc-eEECCEEEECCchhH
Confidence            457888899999999999999999999987 3566677888888 799999999999764

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=98.92  E-value=2.4e-09  Score=101.37  Aligned_cols=117  Identities=19%  Similarity=0.195  Sum_probs=75.3

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCc--c-------------ccccCCCCCCCCCCcccc
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPAL--S-------------KAYLFPEGTARLPGFHVC   68 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~--~-------------~~~~~~~~~~~~~~~~~~   68 (433)
                      .+||+|||||++|+++|..|++.|++   |+|+|+. .........  .             ..+....  .....+...
T Consensus        11 ~~dVvIVGaG~aGl~~A~~L~~~G~~---v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~--~~~~~~~~~   85 (379)
T 3alj_A           11 TRRAEVAGGGFAGLTAAIALKQNGWD---VRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGS--HTPPTYETW   85 (379)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHTTC--BCCSCEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCC---EEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHhhC--CCccceEEE
Confidence            58999999999999999999999987   9999998 221100000  0             0000000  000000000


Q ss_pred             --------c---CC--------CCCCCCHhHHHhCCcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccc
Q 013952           69 --------V---GS--------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLR  127 (433)
Q Consensus        69 --------~---~~--------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~  127 (433)
                              .   +.        .....+.+.+.+.|++++.++.|..++.++ .|++.+++++++|.||.|+|.....
T Consensus        86 ~~g~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~-~v~~~~g~~~~ad~vV~AdG~~s~v  162 (379)
T 3alj_A           86 MHNKSVSKETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADPVG-RLTLQTGEVLEADLIVGADGVGSKV  162 (379)
T ss_dssp             ETTEEEEEECGGGCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEETTT-EEEETTSCEEECSEEEECCCTTCHH
T ss_pred             eCCceeeeccCCCCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEeCC-EEEECCCCEEEcCEEEECCCccHHH
Confidence                    0   00        001123344556799999999999998755 8888888899999999999987643

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=98.91  E-value=1.4e-09  Score=103.80  Aligned_cols=123  Identities=16%  Similarity=0.180  Sum_probs=72.1

Q ss_pred             CCC-CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCc--cc---------ccc----CCCCC-C--
Q 013952            1 MAE-KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPAL--SK---------AYL----FPEGT-A--   60 (433)
Q Consensus         1 Mm~-~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~--~~---------~~~----~~~~~-~--   60 (433)
                      ||+ .++||+|||||++|+++|..|++.|++   |+|+|+. ......+..  ..         ++.    ..... .  
T Consensus         1 ~M~~~~~dVvIVGaG~aGl~~A~~L~~~G~~---V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~   77 (399)
T 2x3n_A            1 GMTDNHIDVLINGCGIGGAMLAYLLGRQGHR---VVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGRVRHE   77 (399)
T ss_dssp             ----CEEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTTCEEECE
T ss_pred             CCCCCcCCEEEECcCHHHHHHHHHHHhCCCc---EEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhCCCccee
Confidence            554 358999999999999999999999987   9999998 221100000  00         000    00000 0  


Q ss_pred             ---CCCCc-ccccCC---------------CCCCCCHhHHHhC-CcEEEeCceEEEEECCCC----EEEeCCCcEEecce
Q 013952           61 ---RLPGF-HVCVGS---------------GGERLLPEWYKEK-GIELILSTEIVRADIASK----TLLSATGLIFKYQI  116 (433)
Q Consensus        61 ---~~~~~-~~~~~~---------------~~~~~~~~~~~~~-~v~~~~~~~v~~i~~~~~----~v~~~~~~~~~~d~  116 (433)
                         ...+. ...+..               .....+.+.+.+. +++++.+++|.+++.++.    .|++.+|+++++|.
T Consensus        78 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~~g~~~~ad~  157 (399)
T 2x3n_A           78 LEVYHDGELLRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLNDGRVLRPRV  157 (399)
T ss_dssp             EEEEETTEEEEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             EEEeCCCCEEEecchHHhcccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCceEEEEEECCCCEEECCE
Confidence               00000 000000               0001122223344 899999999999886544    56777888899999


Q ss_pred             EEEccCCCcc
Q 013952          117 LVIATGSTVL  126 (433)
Q Consensus       117 lvlAtG~~~~  126 (433)
                      ||.|+|....
T Consensus       158 vV~AdG~~s~  167 (399)
T 2x3n_A          158 VVGADGIASY  167 (399)
T ss_dssp             EEECCCTTCH
T ss_pred             EEECCCCChH
Confidence            9999998654

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=98.89  E-value=2.5e-09  Score=101.89  Aligned_cols=121  Identities=16%  Similarity=0.168  Sum_probs=73.7

Q ss_pred             CCCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccc-cCC--------CC----C--CCCCCc
Q 013952            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAY-LFP--------EG----T--ARLPGF   65 (433)
Q Consensus         1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~-~~~--------~~----~--~~~~~~   65 (433)
                      |++..+||+|||||++|+++|..|++.|++   |+|+|+...+....  ..+. +.+        ..    .  ......
T Consensus         1 M~~~~~~V~IVGaG~aGl~~A~~L~~~G~~---v~v~E~~~~~~~~~--~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~   75 (397)
T 2vou_A            1 MSPTTDRIAVVGGSISGLTAALMLRDAGVD---VDVYERSPQPLSGF--GTGIVVQPELVHYLLEQGVELDSISVPSSSM   75 (397)
T ss_dssp             -CCCCSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSCCCC--SCEEECCHHHHHHHHHTTCCGGGTCBCCCEE
T ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHhCCCC---EEEEecCCCCCCcc--ccccccChhHHHHHHHcCCccccccccccce
Confidence            666679999999999999999999999987   99999982221110  0000 000        00    0  000000


Q ss_pred             ccc---cCCC--------C---CCCCHhHHHh--CCcEEEeCceEEEEECCCC--EEEeCCCcEEecceEEEccCCCcc
Q 013952           66 HVC---VGSG--------G---ERLLPEWYKE--KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVL  126 (433)
Q Consensus        66 ~~~---~~~~--------~---~~~~~~~~~~--~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~  126 (433)
                      ...   .+..        .   ...+.+.+.+  .+++++.+++|.++..++.  +|++.+++++++|.||.|+|....
T Consensus        76 ~~~~~~~g~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~  154 (397)
T 2vou_A           76 EYVDALTGERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGASV  154 (397)
T ss_dssp             EEEETTTCCEEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTCH
T ss_pred             EEEecCCCCccccccCcccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCEEEEEECCCCEEECCEEEECCCcchh
Confidence            000   0000        0   0011222222  3889999999999876554  466788889999999999998654

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=98.89  E-value=3.8e-08  Score=100.38  Aligned_cols=58  Identities=9%  Similarity=0.074  Sum_probs=48.5

Q ss_pred             CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCc-EEECCEEEEcccCcc
Q 013952          203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGR-TLEADIVVVGVGGRP  262 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~-~i~~d~vi~a~G~~p  262 (433)
                      +..+...+.+.+++.|++++++++|+++..++++  +.|.+.+|. ++.+|.||+|+|...
T Consensus       411 p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~--v~V~t~~G~~~i~Ad~VVlAtG~~s  469 (689)
T 3pvc_A          411 PSDLTHALMMLAQQNGMTCHYQHELQRLKRIDSQ--WQLTFGQSQAAKHHATVILATGHRL  469 (689)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEESCCEEEEEECSSS--EEEEEC-CCCCEEESEEEECCGGGT
T ss_pred             HHHHHHHHHHHHHhCCCEEEeCCeEeEEEEeCCe--EEEEeCCCcEEEECCEEEECCCcch
Confidence            5688889999999999999999999999874333  578888886 799999999999653

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=98.88  E-value=3.3e-09  Score=96.07  Aligned_cols=119  Identities=18%  Similarity=0.150  Sum_probs=68.7

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHc-CCCCCcEEEEcCCCCCCCCCCccccccCC-----CCCCCC--CCccccc-C-----
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQ-GVKPGELAIISKEVAPYERPALSKAYLFP-----EGTARL--PGFHVCV-G-----   70 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~-g~~~~~V~lie~~~~~~~~~~~~~~~~~~-----~~~~~~--~~~~~~~-~-----   70 (433)
                      ++||+|||||++|+++|..|+++ |.+   |+|+|+...+........+.+..     .....+  .+.++.. +     
T Consensus        39 ~~dVvIIGgG~aGl~aA~~la~~~G~~---V~viEk~~~~gg~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~  115 (284)
T 1rp0_A           39 ETDVVVVGAGSAGLSAAYEISKNPNVQ---VAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVV  115 (284)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTSC---EEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEE
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCCe---EEEEECCCCCCCceecCCcchHHHHcCcHHHHHHHHcCCCcccCCCEEEe
Confidence            57999999999999999999997 887   99999982111111111000000     000000  0000000 0     


Q ss_pred             ---CCCCCCCHhHHHh-CCcEEEeCceEEEEECCCCEE---EeC---------CC-----cEEecceEEEccCCCcc
Q 013952           71 ---SGGERLLPEWYKE-KGIELILSTEIVRADIASKTL---LSA---------TG-----LIFKYQILVIATGSTVL  126 (433)
Q Consensus        71 ---~~~~~~~~~~~~~-~~v~~~~~~~v~~i~~~~~~v---~~~---------~~-----~~~~~d~lvlAtG~~~~  126 (433)
                         ......+.+.+.+ .|++++.++.|..+..++..+   .+.         ++     .++++|.+|+|+|..+.
T Consensus       116 ~~~~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~s~  192 (284)
T 1rp0_A          116 KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGP  192 (284)
T ss_dssp             SCHHHHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSST
T ss_pred             cCHHHHHHHHHHHHHhcCCCEEEcCcEEEEEEecCCeEEEEEEeccccccccCccccCceEEEECCEEEECCCCchH
Confidence               0000012223333 699999999999998665533   331         22     57999999999997654

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=98.87  E-value=3.5e-08  Score=93.60  Aligned_cols=72  Identities=17%  Similarity=0.274  Sum_probs=55.9

Q ss_pred             CeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccC
Q 013952          186 IDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL  263 (433)
Q Consensus       186 ~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~  263 (433)
                      ....++.+....+.   +..+...+.+.+++.|++++++++|+++..++++  ..+.+.+| ++.+|.||+|+|...+
T Consensus       135 ~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~--~~v~~~~g-~~~a~~vV~A~G~~~~  206 (389)
T 2gf3_A          135 NYNAIFEPNSGVLF---SENCIRAYRELAEARGAKVLTHTRVEDFDISPDS--VKIETANG-SYTADKLIVSMGAWNS  206 (389)
T ss_dssp             TEEEEEETTCEEEE---HHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSC--EEEEETTE-EEEEEEEEECCGGGHH
T ss_pred             CceEEEeCCCcEEe---HHHHHHHHHHHHHHCCCEEEcCcEEEEEEecCCe--EEEEeCCC-EEEeCEEEEecCccHH
Confidence            45666666555443   5688889999999999999999999999874333  45777666 7999999999997653

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=98.86  E-value=8.9e-09  Score=99.73  Aligned_cols=59  Identities=22%  Similarity=0.369  Sum_probs=48.9

Q ss_pred             CHHHHHHHHHHHHhcCcEEEcCCeEEEEEec--------------CCCcEEEEEeCCCcEE--ECCEEEEcccCcc
Q 013952          203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTN--------------ADGEVKEVKLKDGRTL--EADIVVVGVGGRP  262 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~--------------~~g~~~~v~~~~g~~i--~~d~vi~a~G~~p  262 (433)
                      +..+.+.+.+.+++.|++++++++|+++..+              +++.+..|.+.+| ++  .||.||+|+|...
T Consensus       180 ~~~l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~g-~i~~~Ad~VV~AtG~~s  254 (448)
T 3axb_A          180 AEKVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDG-TRVEVGEKLVVAAGVWS  254 (448)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETTS-CEEEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccCCCceEEEEeCCC-EEeecCCEEEECCCcCH
Confidence            4588889999999999999999999999752              2445567888888 68  9999999999753

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=98.86  E-value=4.3e-09  Score=101.06  Aligned_cols=61  Identities=18%  Similarity=0.233  Sum_probs=49.6

Q ss_pred             CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh
Q 013952          203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF  267 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~  267 (433)
                      ...+.+.+.+.+++.|++++++++|++|.. +++++  | ..+|+++.+|.||+|+|......++
T Consensus       188 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~-~~~~v--V-~~~g~~~~ad~Vv~a~~~~~~~~ll  248 (421)
T 3nrn_A          188 CKAVIDELERIIMENKGKILTRKEVVEINI-EEKKV--Y-TRDNEEYSFDVAISNVGVRETVKLI  248 (421)
T ss_dssp             HHHHHHHHHHHHHTTTCEEESSCCEEEEET-TTTEE--E-ETTCCEEECSEEEECSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCEEEcCCeEEEEEE-ECCEE--E-EeCCcEEEeCEEEECCCHHHHHHhc
Confidence            478889999999999999999999999987 34444  5 4677789999999999976544444

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=98.86  E-value=5.2e-09  Score=103.74  Aligned_cols=37  Identities=22%  Similarity=0.486  Sum_probs=34.5

Q ss_pred             CCCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      |++.++||+|||||++|+++|..|+++|.+   |+|||+.
T Consensus         1 M~~~~~dVlIVGaG~aGl~~A~~La~~G~~---v~viEr~   37 (535)
T 3ihg_A            1 MNDHEVDVLVVGAGLGGLSTAMFLARQGVR---VLVVERR   37 (535)
T ss_dssp             CCCCSEEEEEECCSHHHHHHHHHHHTTTCC---EEEECSS
T ss_pred             CCCccCcEEEECcCHHHHHHHHHHHHCCCC---EEEEeCC
Confidence            666679999999999999999999999987   9999998

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=98.86  E-value=1.6e-09  Score=105.15  Aligned_cols=125  Identities=19%  Similarity=0.239  Sum_probs=74.5

Q ss_pred             CCCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CC-CCCC-CC--ccccccCCCC---C------CCCCCcc
Q 013952            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VA-PYER-PA--LSKAYLFPEG---T------ARLPGFH   66 (433)
Q Consensus         1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~-~~~~-~~--~~~~~~~~~~---~------~~~~~~~   66 (433)
                      ||+.++||+|||||++|+++|..|++.|++   |+|+|+. .. .... +.  ++...+..-.   .      ....+..
T Consensus         2 mm~~~~dVvIVGaG~aGl~aA~~La~~G~~---V~vlE~~~~~~~g~~~~g~~l~~~~l~~lg~~~~~~~~~~~~~~~~~   78 (453)
T 3atr_A            2 MKELKYDVLIIGGGFAGSSAAYQLSRRGLK---ILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGEELENKINGIK   78 (453)
T ss_dssp             CEEEECSEEEECCSHHHHHHHHHHSSSSCC---EEEECSSCGGGTTCSCCCCEEEHHHHHHTTCCCCCGGGEEEEEEEEE
T ss_pred             CCCCcCCEEEECcCHHHHHHHHHHHHCCCC---EEEEECCCCCCCCcccccccccHHHHHHhcCCCCchHHHHhhhcceE
Confidence            666679999999999999999999999987   9999998 21 1111 10  0000000000   0      0000000


Q ss_pred             ---------cccCC--------CCCCCCHhHHHhCCcEEEeCceEEEEECCCCE---EEeC---CCc--EEecceEEEcc
Q 013952           67 ---------VCVGS--------GGERLLPEWYKEKGIELILSTEIVRADIASKT---LLSA---TGL--IFKYQILVIAT  121 (433)
Q Consensus        67 ---------~~~~~--------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~---v~~~---~~~--~~~~d~lvlAt  121 (433)
                               .....        .....+.+.+.+.|++++.++.|.++..++..   |.+.   +|+  ++++|.||.|+
T Consensus        79 ~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~G~~~~~~ad~VV~Ad  158 (453)
T 3atr_A           79 LYSPDMQTVWTVNGEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFEDGYVKGAVLFNRRTNEELTVYSKVVVEAT  158 (453)
T ss_dssp             EECTTSSCEEEEEEEEEEECHHHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTTEEEEEECSEEEECC
T ss_pred             EECCCCceEEeECCCcEEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCceEEEEcCEEEECc
Confidence                     00000        00011223334579999999999998766554   3343   565  79999999999


Q ss_pred             CCCcccc
Q 013952          122 GSTVLRL  128 (433)
Q Consensus       122 G~~~~~~  128 (433)
                      |......
T Consensus       159 G~~s~vr  165 (453)
T 3atr_A          159 GYSRSFR  165 (453)
T ss_dssp             GGGCTTG
T ss_pred             CCchhhH
Confidence            9765443

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=98.86  E-value=2.9e-09  Score=105.17  Aligned_cols=47  Identities=11%  Similarity=0.035  Sum_probs=37.4

Q ss_pred             HHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013952          213 YYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR  261 (433)
Q Consensus       213 ~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~  261 (433)
                      ..++.|++++++++|++|..+ ++. ..|.+.+|+++.||.||+|++..
T Consensus       221 l~~~lg~~i~~~~~V~~i~~~-~~~-v~v~~~~g~~~~ad~VI~a~p~~  267 (520)
T 1s3e_A          221 IMDLLGDRVKLERPVIYIDQT-REN-VLVETLNHEMYEAKYVISAIPPT  267 (520)
T ss_dssp             HHHHHGGGEESSCCEEEEECS-SSS-EEEEETTSCEEEESEEEECSCGG
T ss_pred             HHHHcCCcEEcCCeeEEEEEC-CCe-EEEEECCCeEEEeCEEEECCCHH
Confidence            334448899999999999873 333 45888899899999999999853

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=98.84  E-value=2.4e-09  Score=106.02  Aligned_cols=157  Identities=15%  Similarity=0.182  Sum_probs=92.4

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-C-CCCCCCCcccccc------------CCC------------
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-V-APYERPALSKAYL------------FPE------------   57 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~-~~~~~~~~~~~~~------------~~~------------   57 (433)
                      ..|||+|||||+||++||..|++.|.+   |+|+|+. . .....|..+.+..            ...            
T Consensus        20 ~~yDVIVIGgG~AGl~AAlaLAr~G~k---VlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~~~~~~d~~gi~f   96 (641)
T 3cp8_A           20 HMYDVIVVGAGHAGCEAALAVARGGLH---CLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGEMGKAIDATGIQF   96 (641)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCSHHHHHHHHEEEE
T ss_pred             CcCCEEEECccHHHHHHHHHHHHCCCc---EEEEEecccccCCCccccchhhhhHHHHHHHHHhcccHHHHHHHhcCCch
Confidence            368999999999999999999999987   9999987 2 2111121111100            000            


Q ss_pred             ---CCCCCCCccc---ccCC-CCCCCCHhHHHh-CCcEEEeCceEEEEECCCCE---EEeCCCcEEecceEEEccCCCcc
Q 013952           58 ---GTARLPGFHV---CVGS-GGERLLPEWYKE-KGIELILSTEIVRADIASKT---LLSATGLIFKYQILVIATGSTVL  126 (433)
Q Consensus        58 ---~~~~~~~~~~---~~~~-~~~~~~~~~~~~-~~v~~~~~~~v~~i~~~~~~---v~~~~~~~~~~d~lvlAtG~~~~  126 (433)
                         ....-+....   .... .....+.+.+++ .+++++.+ .|..+..++..   |.+.+|.++.++.+|+|||+.+.
T Consensus        97 ~~l~~~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~~~-~V~~L~~d~g~V~GV~t~~G~~i~Ad~VVLATG~~s~  175 (641)
T 3cp8_A           97 RMLNRSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLLQD-TVIGVSANSGKFSSVTVRSGRAIQAKAAILACGTFLN  175 (641)
T ss_dssp             EEECSSSCTTTCEEEEEECHHHHHHHHHHHHHTCTTEEEEEC-CEEEEEEETTEEEEEEETTSCEEEEEEEEECCTTCBT
T ss_pred             hhcccccCccccchhhhcCHHHHHHHHHHHHHhCCCCEEEee-EEEEEEecCCEEEEEEECCCcEEEeCEEEECcCCCCC
Confidence               0000000000   0000 000112233444 48999765 88887765554   56778889999999999999775


Q ss_pred             ccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEE
Q 013952          127 RLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMV  191 (433)
Q Consensus       127 ~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li  191 (433)
                      .+.   +.|..   -+.                  +.+++   |+.++++++..|.+.|.+|..+
T Consensus       176 ~~i---~~G~~---~~~------------------~g~~v---G~~~a~~la~~L~~~G~kv~~l  213 (641)
T 3cp8_A          176 GLI---HIGMD---HFP------------------GGRST---AEPPVEGLTESLASLGFSFGRL  213 (641)
T ss_dssp             CEE---EETTE---EEE------------------CSSST---TSCCBCSHHHHHHHTTCCEEEE
T ss_pred             ccc---eeeee---eec------------------ccccc---CCchhhhhHHHHHhCCceEEee
Confidence            443   12211   011                  11221   3567788999999999988655

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=98.84  E-value=1.7e-08  Score=95.51  Aligned_cols=58  Identities=19%  Similarity=0.123  Sum_probs=48.6

Q ss_pred             CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccC
Q 013952          203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL  263 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~  263 (433)
                      +..+.+.+.+.+++.|++++++++|.++..+ ++.+ .|.+.+| ++.+|.||+|+|....
T Consensus       163 ~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~-~~~~-~v~~~~g-~~~a~~vV~A~G~~s~  220 (382)
T 1ryi_A          163 PYFVCKAYVKAAKMLGAEIFEHTPVLHVERD-GEAL-FIKTPSG-DVWANHVVVASGVWSG  220 (382)
T ss_dssp             HHHHHHHHHHHHHHTTCEEETTCCCCEEECS-SSSE-EEEETTE-EEEEEEEEECCGGGTH
T ss_pred             HHHHHHHHHHHHHHCCCEEEcCCcEEEEEEE-CCEE-EEEcCCc-eEEcCEEEECCChhHH
Confidence            5678889999999999999999999999873 3444 7777777 8999999999997643

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=98.83  E-value=5.6e-08  Score=99.00  Aligned_cols=58  Identities=14%  Similarity=0.165  Sum_probs=49.4

Q ss_pred             CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013952          203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP  262 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p  262 (433)
                      +..+...+.+.+++.|++++++++|+++..+ ++. +.|.+.+|.++.+|.||+|+|...
T Consensus       416 p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~-~~~-v~V~t~~G~~i~Ad~VVlAtG~~s  473 (676)
T 3ps9_A          416 PAELTRNVLELAQQQGLQIYYQYQLQNFSRK-DDC-WLLNFAGDQQATHSVVVLANGHQI  473 (676)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEESCCEEEEEEE-TTE-EEEEETTSCEEEESEEEECCGGGG
T ss_pred             HHHHHHHHHHHHHhCCCEEEeCCeeeEEEEe-CCe-EEEEECCCCEEECCEEEECCCcch
Confidence            4688889999999999999999999999873 333 578888888899999999999653

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=98.82  E-value=9.7e-09  Score=100.85  Aligned_cols=119  Identities=19%  Similarity=0.232  Sum_probs=74.0

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCC---------------CCC-C--Cc--cccccCCCCC--CC-
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAP---------------YER-P--AL--SKAYLFPEGT--AR-   61 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~---------------~~~-~--~~--~~~~~~~~~~--~~-   61 (433)
                      .+||+|||||++|+++|+.|++.|++   |+|+|+....               +.. +  ..  .+...+....  .. 
T Consensus       107 ~~DVVIVGgGpaGL~aA~~La~~G~k---V~VlEr~~~~~~R~~~~~g~w~~~~~~~~~~i~~g~gGag~~sdgkl~~~i  183 (549)
T 3nlc_A          107 TERPIVIGFGPCGLFAGLVLAQMGFN---PIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQV  183 (549)
T ss_dssp             CCCCEEECCSHHHHHHHHHHHHTTCC---CEEECSSCCHHHHHHHHHHHHHHCCCCTTSSSSSSTTGGGTTSCCCCCCCS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCe---EEEEEccCcccccccchhcccccccccccccceeccCCcccccCCceEEEe
Confidence            37999999999999999999999988   9999987111               000 0  00  0000000000  00 


Q ss_pred             -CCCcc--------cccCCC------------------CCCCCHhHHHhCCcEEEeCceEEEEECCCC---EEEeCCCcE
Q 013952           62 -LPGFH--------VCVGSG------------------GERLLPEWYKEKGIELILSTEIVRADIASK---TLLSATGLI  111 (433)
Q Consensus        62 -~~~~~--------~~~~~~------------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~---~v~~~~~~~  111 (433)
                       .+.+.        ...+..                  ....+.+.+++.|++++.++.|..+..++.   .|.+.++++
T Consensus       184 ~~~~~~~~~v~~~~~~~G~~~~i~~~~~p~~G~~~~~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~~~v~gV~l~~G~~  263 (549)
T 3nlc_A          184 KDPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEE  263 (549)
T ss_dssp             CCTTCHHHHHHHHHHHTTCCGGGGTBSSCCCCHHHHHHHHHHHHHHHHHTTCEEESSCCEEEEEESSSBEEEEEETTSCE
T ss_pred             ccccccHHHHHHHHHHcCCCceEeeccccccccchHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEeCCEEEEEEECCCCE
Confidence             00000        000000                  011233445568999999999999987654   367788889


Q ss_pred             EecceEEEccCCCcc
Q 013952          112 FKYQILVIATGSTVL  126 (433)
Q Consensus       112 ~~~d~lvlAtG~~~~  126 (433)
                      +.+|.||+|+|..+.
T Consensus       264 i~Ad~VVlA~G~~s~  278 (549)
T 3nlc_A          264 IKSRHVVLAVGHSAR  278 (549)
T ss_dssp             EECSCEEECCCTTCH
T ss_pred             EECCEEEECCCCChh
Confidence            999999999998773

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=98.81  E-value=3.2e-08  Score=98.28  Aligned_cols=61  Identities=25%  Similarity=0.451  Sum_probs=51.8

Q ss_pred             CHHHHHHHHHHHHhc-CcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccCh
Q 013952          203 TADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI  264 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~-GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~  264 (433)
                      ...+.+.+.+.+++. ||+++++ +|+++..++++.+..|.+.+|+++.+|.||.|+|.....
T Consensus       193 ~~~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~~~g~~~~v~~~~G~~i~ad~vI~A~G~~S~~  254 (550)
T 2e4g_A          193 AHLVADFLRRFATEKLGVRHVED-RVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGLL  254 (550)
T ss_dssp             HHHHHHHHHHHHHHHSCCEEEEC-CEEEEEECTTSCEEEEEETTSCEEECSEEEECCGGGCCC
T ss_pred             HHHHHHHHHHHHHhcCCcEEEEC-eEeEEEEcCCCCEEEEEECCCCEEECCEEEECCCCchhh
Confidence            356888888889888 9999999 999998755677778999999889999999999976543

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=98.78  E-value=1.4e-08  Score=99.97  Aligned_cols=122  Identities=17%  Similarity=0.276  Sum_probs=72.4

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCC--Ccccc---ccCCCCC------CCCC--------
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERP--ALSKA---YLFPEGT------ARLP--------   63 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~--~~~~~---~~~~~~~------~~~~--------   63 (433)
                      .++||+|||||++|+++|..|++.|++   |+|+|+. .......  .....   ++.....      ...+        
T Consensus         6 ~~~dVvIVGgG~aGl~aA~~La~~G~~---V~liE~~~~~~~~~g~~~~~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~   82 (512)
T 3e1t_A            6 EVFDLIVIGGGPGGSTLASFVAMRGHR---VLLLEREAFPRHQIGESLLPATVHGICAMLGLTDEMKRAGFPIKRGGTFR   82 (512)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCC---EEEECSSCSSCCCSCCBCCHHHHTTHHHHTTCHHHHHTTTCCEECEEEEE
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCCC---EEEEccCCCCCCCCCcccCcchHHHHHHHhCcHHHHHHcCCccccCceEE
Confidence            358999999999999999999999987   9999998 2211110  00000   0000000      0000        


Q ss_pred             ------CcccccC-----C-C---------CCCCCHhHHHhCCcEEEeCceEEEEECCCCE---EE--eCCCc--EEecc
Q 013952           64 ------GFHVCVG-----S-G---------GERLLPEWYKEKGIELILSTEIVRADIASKT---LL--SATGL--IFKYQ  115 (433)
Q Consensus        64 ------~~~~~~~-----~-~---------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~---v~--~~~~~--~~~~d  115 (433)
                            .....+.     . .         ....+.+.+.+.|++++.++.|..+..++..   |.  ..+|.  ++.+|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~~~~v~gv~~~~~dG~~~~i~ad  162 (512)
T 3e1t_A           83 WGKEPEPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSERKGVDVRERHEVIDVLFEGERAVGVRYRNTEGVELMAHAR  162 (512)
T ss_dssp             CSSCSSCEEEESSSSSSSTTCCEEBCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEETTEEEEEEEECSSSCEEEEEEE
T ss_pred             ecCCccccccccccCCCCCcceeeEecHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEECCEEEEEEEEeCCCCEEEEEcC
Confidence                  0000000     0 0         0011233345579999999999998876653   33  34563  79999


Q ss_pred             eEEEccCCCcccc
Q 013952          116 ILVIATGSTVLRL  128 (433)
Q Consensus       116 ~lvlAtG~~~~~~  128 (433)
                      .||.|+|......
T Consensus       163 ~VI~AdG~~S~vr  175 (512)
T 3e1t_A          163 FIVDASGNRTRVS  175 (512)
T ss_dssp             EEEECCCTTCSSG
T ss_pred             EEEECCCcchHHH
Confidence            9999999865443

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=98.78  E-value=4.1e-10  Score=113.02  Aligned_cols=54  Identities=17%  Similarity=0.310  Sum_probs=43.0

Q ss_pred             HhcCcEEEcCCeEEEEEecCC-CcEEEEEeC---CCc--EEECCEEEEcccCccChhhhh
Q 013952          215 ANKGIKIIKGTVAVGFTTNAD-GEVKEVKLK---DGR--TLEADIVVVGVGGRPLISLFK  268 (433)
Q Consensus       215 ~~~GV~v~~~~~v~~i~~~~~-g~~~~v~~~---~g~--~i~~d~vi~a~G~~p~~~~~~  268 (433)
                      ++.||++++++.|++|..+++ +++.+|++.   +|+  ++.+|.||+|+|..|+..++.
T Consensus       271 ~~~nv~v~~~~~V~~i~~~~~~~~v~GV~~~~~~~g~~~~i~A~~VIlaaG~~~s~~lL~  330 (623)
T 3pl8_A          271 PEERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLV  330 (623)
T ss_dssp             EEEEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEECEEEEEECSCTTHHHHHHH
T ss_pred             cCCCEEEEeCCEEEEEEEECCCCEEEEEEEEEcCCCcEEEEECCEEEEcCCCcCCHHHHH
Confidence            445899999999999987432 377777774   353  688999999999999998774

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=98.77  E-value=9.4e-08  Score=90.92  Aligned_cols=57  Identities=18%  Similarity=0.165  Sum_probs=45.8

Q ss_pred             CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013952          203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP  262 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p  262 (433)
                      +..+...+.+.+++.|++++++++|+++..+ ++. ..|.+.++ ++.+|.||+|+|...
T Consensus       152 ~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~-~~~-v~v~t~~g-~i~a~~VV~A~G~~s  208 (397)
T 2oln_A          152 VRGTLAALFTLAQAAGATLRAGETVTELVPD-ADG-VSVTTDRG-TYRAGKVVLACGPYT  208 (397)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEESCCEEEEEEE-TTE-EEEEESSC-EEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHHcCCEEECCCEEEEEEEc-CCe-EEEEECCC-EEEcCEEEEcCCcCh
Confidence            4567788888889999999999999999873 333 45777666 799999999999753

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=98.77  E-value=2.1e-08  Score=94.78  Aligned_cols=57  Identities=19%  Similarity=0.197  Sum_probs=48.4

Q ss_pred             CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013952          203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP  262 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p  262 (433)
                      +..+...+.+.+++.|++++++++|+++..+ ++. ..|++.+| ++.||.||+|+|...
T Consensus       153 ~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~-~~~-~~V~t~~g-~i~a~~VV~A~G~~s  209 (381)
T 3nyc_A          153 TDALHQGYLRGIRRNQGQVLCNHEALEIRRV-DGA-WEVRCDAG-SYRAAVLVNAAGAWC  209 (381)
T ss_dssp             HHHHHHHHHHHHHHTTCEEESSCCCCEEEEE-TTE-EEEECSSE-EEEESEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHHCCCEEEcCCEEEEEEEe-CCe-EEEEeCCC-EEEcCEEEECCChhH
Confidence            5678888999999999999999999999873 333 67888887 899999999999754

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=98.76  E-value=8.2e-09  Score=101.04  Aligned_cols=118  Identities=17%  Similarity=0.188  Sum_probs=72.3

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccc------cCCCCC-CCCCCccc-----ccCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAY------LFPEGT-ARLPGFHV-----CVGS   71 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~------~~~~~~-~~~~~~~~-----~~~~   71 (433)
                      .+||+|||||++|+++|..|++.|++   |+|||+. ...  ++......      +..... .....+..     ....
T Consensus        92 ~~dVvIVGgG~aGl~aA~~La~~G~~---V~liEk~~~~g--~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~  166 (497)
T 2bry_A           92 NTKCLVVGAGPCGLRAAVELALLGAR---VVLVEKRIKFS--RHNVLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIR  166 (497)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESCSSCC--CCCEEECCHHHHHHHHTTTHHHHCTTTTCTTCCEEEHH
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCe---EEEEEeccccC--CCCcccCChhHHHHHHHcCCccccccccccccccCCHH
Confidence            58999999999999999999999987   9999998 221  11100000      000000 00000000     0000


Q ss_pred             CCCCCCHhHHHhCCcEEEeCceEEEEECC-----CCEEEe--C-CC--cEEecceEEEccCCCccc
Q 013952           72 GGERLLPEWYKEKGIELILSTEIVRADIA-----SKTLLS--A-TG--LIFKYQILVIATGSTVLR  127 (433)
Q Consensus        72 ~~~~~~~~~~~~~~v~~~~~~~v~~i~~~-----~~~v~~--~-~~--~~~~~d~lvlAtG~~~~~  127 (433)
                      .....+.+.+++.+++++.++.|.++..+     ...|.+  . +|  .++.+|+||+|+|..+..
T Consensus       167 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~~  232 (497)
T 2bry_A          167 QLQLLLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFVP  232 (497)
T ss_dssp             HHHHHHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCCC
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCccc
Confidence            00112344455689999999999999863     124555  3 45  478999999999987654

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=98.76  E-value=6.2e-08  Score=90.51  Aligned_cols=95  Identities=20%  Similarity=0.260  Sum_probs=78.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC---------------------CCC-C---------CHHHHHHHH
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM---------------------PRL-F---------TADIAAFYE  211 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~---------------------~~~-~---------~~~~~~~l~  211 (433)
                      .+++|||+|+.|+.+|..|++.|.+|+++++.+.+.                     +.. .         ..++.+.+.
T Consensus         4 ~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   83 (357)
T 4a9w_A            4 VDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVLAYLA   83 (357)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHHHHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHHHHHHH
Confidence            379999999999999999999999999999875421                     000 0         067888899


Q ss_pred             HHHHhcCcEEEcCCeEEEEEecCCCcEEE-EEeCCCcEEECCEEEEcccC
Q 013952          212 GYYANKGIKIIKGTVAVGFTTNADGEVKE-VKLKDGRTLEADIVVVGVGG  260 (433)
Q Consensus       212 ~~l~~~GV~v~~~~~v~~i~~~~~g~~~~-v~~~~g~~i~~d~vi~a~G~  260 (433)
                      +.+++.|++++++++|.++..  ++.... |.+.++ ++.+|.||+|+|.
T Consensus        84 ~~~~~~~~~~~~~~~v~~i~~--~~~~~~~v~~~~g-~~~~d~vV~AtG~  130 (357)
T 4a9w_A           84 QYEQKYALPVLRPIRVQRVSH--FGERLRVVARDGR-QWLARAVISATGT  130 (357)
T ss_dssp             HHHHHTTCCEECSCCEEEEEE--ETTEEEEEETTSC-EEEEEEEEECCCS
T ss_pred             HHHHHcCCEEEcCCEEEEEEE--CCCcEEEEEeCCC-EEEeCEEEECCCC
Confidence            999999999999999999987  333355 888887 8999999999995

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=98.76  E-value=9.8e-08  Score=93.72  Aligned_cols=102  Identities=20%  Similarity=0.210  Sum_probs=84.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc------------------------------------C----CC-
Q 013952          162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC------------------------------------M----PR-  200 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~------------------------------------~----~~-  200 (433)
                      ..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+                                    +    .. 
T Consensus       107 ~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~~~~~R~~~~~g~w~~~~~~~~~~i~~g~gGag~~sdgkl~~~i~~~  186 (549)
T 3nlc_A          107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKDP  186 (549)
T ss_dssp             CCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSCCHHHHHHHHHHHHHHCCCCTTSSSSSSTTGGGTTSCCCCCCCSCCT
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccCcccccccchhcccccccccccccceeccCCcccccCCceEEEeccc
Confidence            468999999999999999999999999999987432                                    0    00 


Q ss_pred             CC------------------------------CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEE
Q 013952          201 LF------------------------------TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLE  250 (433)
Q Consensus       201 ~~------------------------------~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~  250 (433)
                      ..                              ...+.+.+.+.+++.|++++++++|+++.. +++.+..|.+.+|+++.
T Consensus       187 ~~~~~~v~~~~~~~G~~~~i~~~~~p~~G~~~~~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~-~~~~v~gV~l~~G~~i~  265 (549)
T 3nlc_A          187 NFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHM-EDGQITGVTLSNGEEIK  265 (549)
T ss_dssp             TCHHHHHHHHHHHTTCCGGGGTBSSCCCCHHHHHHHHHHHHHHHHHTTCEEESSCCEEEEEE-SSSBEEEEEETTSCEEE
T ss_pred             cccHHHHHHHHHHcCCCceEeeccccccccchHHHHHHHHHHHHHhcCCEEEeCCEEEEEEE-eCCEEEEEEECCCCEEE
Confidence            00                              145667788888889999999999999987 45677789999999999


Q ss_pred             CCEEEEcccCccCh
Q 013952          251 ADIVVVGVGGRPLI  264 (433)
Q Consensus       251 ~d~vi~a~G~~p~~  264 (433)
                      ||.||+|+|..+..
T Consensus       266 Ad~VVlA~G~~s~~  279 (549)
T 3nlc_A          266 SRHVVLAVGHSARD  279 (549)
T ss_dssp             CSCEEECCCTTCHH
T ss_pred             CCEEEECCCCChhh
Confidence            99999999998864

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=98.76  E-value=1.4e-08  Score=101.07  Aligned_cols=117  Identities=20%  Similarity=0.314  Sum_probs=72.0

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCC-Ccc--------------------------ccccC
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERP-ALS--------------------------KAYLF   55 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~-~~~--------------------------~~~~~   55 (433)
                      +.+||+|||||++|+++|..|++.|++   |+|+|+. ....... .+.                          ..+..
T Consensus        22 ~~~DVvIVGgG~AGl~aA~~Lar~G~~---V~LiEr~~~~~~~~G~~l~p~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~   98 (591)
T 3i3l_A           22 TRSKVAIIGGGPAGSVAGLTLHKLGHD---VTIYERSAFPRYRVGESLLPGTMSILNRLGLQEKIDAQNYVKKPSATFLW   98 (591)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSCSSCCCCCCBCCHHHHHHHHHTTCHHHHHHHCCEEECEEEEEC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHcCCCC---EEEEcCCCCCCCceeeeECHHHHHHHHHcCCcHHHHhcCCcccCCcEEEe
Confidence            468999999999999999999999987   9999998 2211110 000                          00000


Q ss_pred             CCCCCCCCCcccccCC--------C---------CCCCCHhHHHhCCcEEEeCceEEEEECC-CC--EEEeC-CC--cEE
Q 013952           56 PEGTARLPGFHVCVGS--------G---------GERLLPEWYKEKGIELILSTEIVRADIA-SK--TLLSA-TG--LIF  112 (433)
Q Consensus        56 ~~~~~~~~~~~~~~~~--------~---------~~~~~~~~~~~~~v~~~~~~~v~~i~~~-~~--~v~~~-~~--~~~  112 (433)
                      ....   ......+..        .         ....+.+.+.+.|++++.++.|..+..+ +.  .|.+. +|  .++
T Consensus        99 ~~~~---~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~~g~~~~V~~~~~G~~~~i  175 (591)
T 3i3l_A           99 GQDQ---APWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRGITVHEETPVTDVDLSDPDRVVLTVRRGGESVTV  175 (591)
T ss_dssp             SSSC---CCEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEECCSTTCEEEEEEETTEEEEE
T ss_pred             cCCC---ccceeecccccccccccCeeEEEcHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEEecCCceEEE
Confidence            0000   000000000        0         0011233445689999999999999865 32  45555 55  579


Q ss_pred             ecceEEEccCCCcc
Q 013952          113 KYQILVIATGSTVL  126 (433)
Q Consensus       113 ~~d~lvlAtG~~~~  126 (433)
                      .+|.+|.|+|....
T Consensus       176 ~AdlVV~AdG~~S~  189 (591)
T 3i3l_A          176 ESDFVIDAGGSGGP  189 (591)
T ss_dssp             EESEEEECCGGGCH
T ss_pred             EcCEEEECCCCcch
Confidence            99999999997653

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=98.75  E-value=2.1e-08  Score=96.36  Aligned_cols=63  Identities=21%  Similarity=0.255  Sum_probs=51.0

Q ss_pred             CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh
Q 013952          203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF  267 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~  267 (433)
                      ...+.+.+.+.+++.|++++++++|++|.. +++++..|.++ |+++.+|.||+|+|......++
T Consensus       195 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~-~~~~~~gv~~~-g~~~~ad~VV~a~~~~~~~~ll  257 (425)
T 3ka7_A          195 CKGIIDALETVISANGGKIHTGQEVSKILI-ENGKAAGIIAD-DRIHDADLVISNLGHAATAVLC  257 (425)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEE-ETTEEEEEEET-TEEEECSEEEECSCHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHcCCEEEECCceeEEEE-ECCEEEEEEEC-CEEEECCEEEECCCHHHHHHhc
Confidence            367888999999999999999999999987 45666667775 7789999999999965443333

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=98.75  E-value=1.9e-08  Score=99.98  Aligned_cols=119  Identities=22%  Similarity=0.247  Sum_probs=70.5

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCC-CCCCC-ccc---------cc----cCCCCC--CC-CCC-
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAP-YERPA-LSK---------AY----LFPEGT--AR-LPG-   64 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~-~~~~~-~~~---------~~----~~~~~~--~~-~~~-   64 (433)
                      ++||+|||||++|+++|..|++.|++   |+|||+. ... ..+.. +..         ++    ......  .. +.+ 
T Consensus        49 ~~DVvIVGaG~aGL~~A~~La~~G~~---V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~~~~~~  125 (570)
T 3fmw_A           49 TTDVVVVGGGPVGLMLAGELRAGGVG---ALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQVAKGLPFAGI  125 (570)
T ss_dssp             --CEEEECCSHHHHHHHHHHHHTTCC---EEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCBCSBCCBTTB
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCC---EEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcccCCceeCCc
Confidence            47999999999999999999999998   9999998 211 11100 000         00    000000  00 000 


Q ss_pred             ----cccc-c--CCC---------CCCCCHhHHHhCCcEEEeCceEEEEECCCC--EEEe--CCC-cEEecceEEEccCC
Q 013952           65 ----FHVC-V--GSG---------GERLLPEWYKEKGIELILSTEIVRADIASK--TLLS--ATG-LIFKYQILVIATGS  123 (433)
Q Consensus        65 ----~~~~-~--~~~---------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~--~~~-~~~~~d~lvlAtG~  123 (433)
                          +... .  ...         ....+.+.+.+.|++++.+++|..+..++.  +|++  .+| +++++|+||.|.|.
T Consensus       126 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~v~v~~~~~~G~~~~~a~~vV~ADG~  205 (570)
T 3fmw_A          126 FTQGLDFGLVDTRHPYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDAEAVEVTVAGPSGPYPVRARYGVGCDGG  205 (570)
T ss_dssp             CTTCCBGGGSCCSCCSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCSSCEEEEEEETTEEEEEEESEEEECSCS
T ss_pred             ccccccccccCCCCCeeEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCeEEEEEEeCCCcEEEEeCEEEEcCCC
Confidence                0000 0  000         001123334456999999999999877654  3444  567 68999999999998


Q ss_pred             Ccc
Q 013952          124 TVL  126 (433)
Q Consensus       124 ~~~  126 (433)
                      ...
T Consensus       206 ~S~  208 (570)
T 3fmw_A          206 RST  208 (570)
T ss_dssp             SCH
T ss_pred             Cch
Confidence            653

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=98.74  E-value=6.6e-08  Score=92.05  Aligned_cols=120  Identities=14%  Similarity=0.139  Sum_probs=70.7

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccc-cCCCC-------------------CC---
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAY-LFPEG-------------------TA---   60 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~-~~~~~-------------------~~---   60 (433)
                      ..+||+|||||++|+++|..|++.|++   |+|+|+...+..+.. ...+ +.+..                   ..   
T Consensus        25 ~~~dV~IVGaG~aGl~~A~~L~~~G~~---v~v~E~~~~~~~~~~-g~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~  100 (398)
T 2xdo_A           25 SDKNVAIIGGGPVGLTMAKLLQQNGID---VSVYERDNDREARIF-GGTLDLHKGSGQEAMKKAGLLQTYYDLALPMGVN  100 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCE---EEEEECSSSTTCCCC-SCCEECCTTTHHHHHHHTTCHHHHHHHCBCCCEE
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCC---EEEEeCCCCcccccc-CCeeeeCCccHHHHHHhcChHHHHHHhhcccceE
Confidence            468999999999999999999999987   999999821111110 0000 00000                   00   


Q ss_pred             --CCCCccc-cc--------CCCC--CCCCHhHHHh--CCcEEEeCceEEEEECCCC--EEEeCCCcEEecceEEEccCC
Q 013952           61 --RLPGFHV-CV--------GSGG--ERLLPEWYKE--KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGS  123 (433)
Q Consensus        61 --~~~~~~~-~~--------~~~~--~~~~~~~~~~--~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~  123 (433)
                        ...+... ..        ....  ...+.+.+.+  .+++++.+++|..+..++.  +|++.+++++++|.||.|+|.
T Consensus       101 ~~~~~g~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~  180 (398)
T 2xdo_A          101 IADEKGNILSTKNVKPENRFDNPEINRNDLRAILLNSLENDTVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILANGG  180 (398)
T ss_dssp             EECSSSEEEEECCCGGGTTSSCCEECHHHHHHHHHHTSCTTSEEESCCEEEEEECSSSEEEEETTSCCEEESEEEECSCT
T ss_pred             EECCCCCchhhccccccCCCCCceECHHHHHHHHHhhcCCCEEEECCEEEEEEECCCEEEEEECCCcEEecCEEEECCCc
Confidence              0000000 00        0000  0011122222  1357888999999886554  567778888999999999998


Q ss_pred             Cccc
Q 013952          124 TVLR  127 (433)
Q Consensus       124 ~~~~  127 (433)
                      ....
T Consensus       181 ~S~v  184 (398)
T 2xdo_A          181 MSKV  184 (398)
T ss_dssp             TCSC
T ss_pred             chhH
Confidence            6543

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=98.74  E-value=1.9e-08  Score=93.72  Aligned_cols=42  Identities=17%  Similarity=0.360  Sum_probs=34.0

Q ss_pred             HhCCcEEEeCceEEEEECCCC--EEEeCCCcEEecceEEEccCC
Q 013952           82 KEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGS  123 (433)
Q Consensus        82 ~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~  123 (433)
                      ++.+++++.++.|..|..++.  +|.+.++.++.+|+||+|+..
T Consensus       120 ~~~g~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vV~A~p~  163 (342)
T 3qj4_A          120 KESGAEVYFRHRVTQINLRDDKWEVSKQTGSPEQFDLIVLTMPV  163 (342)
T ss_dssp             HHHTCEEESSCCEEEEEECSSSEEEEESSSCCEEESEEEECSCH
T ss_pred             HhcCCEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEEECCCH
Confidence            345899999999999987654  466677777899999999874

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=98.74  E-value=8.7e-08  Score=99.91  Aligned_cols=58  Identities=26%  Similarity=0.311  Sum_probs=49.9

Q ss_pred             CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013952          203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP  262 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p  262 (433)
                      +..+...+.+.+++.|++++++++|+++.. +++.+..|.+.+| ++.||.||+|+|...
T Consensus       150 p~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~v~~V~t~~G-~i~Ad~VV~AaG~~s  207 (830)
T 1pj5_A          150 AARAVQLLIKRTESAGVTYRGSTTVTGIEQ-SGGRVTGVQTADG-VIPADIVVSCAGFWG  207 (830)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEE-ETTEEEEEEETTE-EEECSEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHHcCCEEECCceEEEEEE-eCCEEEEEEECCc-EEECCEEEECCccch
Confidence            568888999999999999999999999987 3556667888877 799999999999764

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=98.72  E-value=9.2e-08  Score=93.07  Aligned_cols=52  Identities=25%  Similarity=0.298  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013952          205 DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG  260 (433)
Q Consensus       205 ~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~  260 (433)
                      .+.+.+.+.+.+  ++++++++|++|+.++++  ..|.+.+|+++.+|.||+|++.
T Consensus       236 ~l~~~l~~~l~~--~~i~~~~~V~~i~~~~~~--~~v~~~~g~~~~ad~vi~a~p~  287 (470)
T 3i6d_A          236 TLVEEIEKQLKL--TKVYKGTKVTKLSHSGSC--YSLELDNGVTLDADSVIVTAPH  287 (470)
T ss_dssp             HHHHHHHHTCCS--EEEECSCCEEEEEECSSS--EEEEESSSCEEEESEEEECSCH
T ss_pred             HHHHHHHHhcCC--CEEEeCCceEEEEEcCCe--EEEEECCCCEEECCEEEECCCH
Confidence            444444443332  799999999999884443  5788899988999999999984

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=98.68  E-value=2.5e-08  Score=99.37  Aligned_cols=33  Identities=18%  Similarity=0.343  Sum_probs=31.5

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      .+||||||||++|++||..|+++|.+   |+|||+.
T Consensus       121 ~~DVvVVG~G~aGl~aA~~la~~G~~---V~vlEk~  153 (566)
T 1qo8_A          121 TTQVLVVGAGSAGFNASLAAKKAGAN---VILVDKA  153 (566)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHTCC---EEEECSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCc---EEEEeCC
Confidence            57999999999999999999999987   9999998

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=98.67  E-value=4.9e-08  Score=97.39  Aligned_cols=33  Identities=30%  Similarity=0.409  Sum_probs=31.5

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      .+||||||||++|++||..|++.|.+   |+|+|+.
T Consensus       126 ~~DVvVVGaG~aGl~aA~~la~~G~~---V~vlEk~  158 (571)
T 1y0p_A          126 TVDVVVVGSGGAGFSAAISATDSGAK---VILIEKE  158 (571)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCC---EEEECSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCc---EEEEeCC
Confidence            58999999999999999999999987   9999998

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=98.66  E-value=1.3e-07  Score=93.86  Aligned_cols=59  Identities=22%  Similarity=0.152  Sum_probs=48.6

Q ss_pred             CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCC---C--cEEECCEEEEcccCcc
Q 013952          203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD---G--RTLEADIVVVGVGGRP  262 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~---g--~~i~~d~vi~a~G~~p  262 (433)
                      +..+...+.+.+++.|++++++++|+++.. +++++..|.+.+   |  .++.||.||.|+|...
T Consensus       169 ~~~l~~~L~~~a~~~G~~i~~~~~V~~l~~-~~g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s  232 (561)
T 3da1_A          169 DARLTLEIMKEAVARGAVALNYMKVESFIY-DQGKVVGVVAKDRLTDTTHTIYAKKVVNAAGPWV  232 (561)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEESEEEEEEEE-ETTEEEEEEEEETTTCCEEEEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHHcCCEEEcCCEEEEEEE-cCCeEEEEEEEEcCCCceEEEECCEEEECCCcch
Confidence            567888888889999999999999999987 466666777653   3  4799999999999653

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=98.66  E-value=1.7e-07  Score=92.08  Aligned_cols=58  Identities=16%  Similarity=0.114  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCC-c--EEECC-EEEEcccCcc
Q 013952          205 DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG-R--TLEAD-IVVVGVGGRP  262 (433)
Q Consensus       205 ~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g-~--~i~~d-~vi~a~G~~p  262 (433)
                      .+.+.+.+.+++.||+++++++++++..++++++..|...++ +  ++.|| .||+|+|-..
T Consensus       203 ~l~~~L~~~~~~~Gv~i~~~t~v~~L~~~~~g~v~GV~~~~~g~~~~i~A~k~VVlAtGG~~  264 (510)
T 4at0_A          203 MLMKPLVETAEKLGVRAEYDMRVQTLVTDDTGRVVGIVAKQYGKEVAVRARRGVVLATGSFA  264 (510)
T ss_dssp             HHHHHHHHHHHHTTCEEECSEEEEEEEECTTCCEEEEEEEETTEEEEEEEEEEEEECCCCCT
T ss_pred             HHHHHHHHHHHHcCCEEEecCEeEEEEECCCCcEEEEEEEECCcEEEEEeCCeEEEeCCChh
Confidence            788899999999999999999999998854688888776543 2  58996 9999999543

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=98.64  E-value=8.4e-07  Score=88.33  Aligned_cols=61  Identities=26%  Similarity=0.313  Sum_probs=48.5

Q ss_pred             CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC--CCc--EEECCEEEEcccCccC
Q 013952          203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK--DGR--TLEADIVVVGVGGRPL  263 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~--~g~--~i~~d~vi~a~G~~p~  263 (433)
                      ...+.+.+.+.+++.||++++++++.++..++++++.+|...  +|+  .+.+|.||+|+|..++
T Consensus       254 g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~~g~v~GV~~~~~~G~~~~i~A~~VVlAtGg~~~  318 (572)
T 1d4d_A          254 GAHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAK  318 (572)
T ss_dssp             HHHHHHHHHHHHHHTTCEEESSEEEEEEEEC--CCEEEEEEEETTTEEEEEECSEEEECCCCCTT
T ss_pred             HHHHHHHHHHHHHHcCCeEEecCEEEEEEECCCCeEEEEEEEeCCCcEEEEEcCEEEEeCCCCcc
Confidence            457788889999999999999999999986332777777665  564  6899999999996553

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.64  E-value=9.7e-08  Score=88.52  Aligned_cols=101  Identities=14%  Similarity=0.154  Sum_probs=79.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC----cc------------CCC----CCCHHHHHHHHHHHHhcCcEE
Q 013952          162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP----WC------------MPR----LFTADIAAFYEGYYANKGIKI  221 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~----~~------------~~~----~~~~~~~~~l~~~l~~~GV~v  221 (433)
                      .++|+|||+|+.|+.+|..|++.|.+|+++++.+    ..            .+.    ....++.+.+.+.+++.|+++
T Consensus        22 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i  101 (338)
T 3itj_A           22 HNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTTEIENFPGFPDGLTGSELMDRMREQSTKFGTEI  101 (338)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCcccccchhhcccCCCcccCCHHHHHHHHHHHHHHcCCEE
Confidence            5689999999999999999999999999999843    10            111    113578888999999999999


Q ss_pred             EcCCeEEEEEecCCCcEEEEEe---CCCcEEECCEEEEcccCccChh
Q 013952          222 IKGTVAVGFTTNADGEVKEVKL---KDGRTLEADIVVVGVGGRPLIS  265 (433)
Q Consensus       222 ~~~~~v~~i~~~~~g~~~~v~~---~~g~~i~~d~vi~a~G~~p~~~  265 (433)
                      +.++ +.++..  ++....+.+   .++..+.+|.+|+|+|.+|...
T Consensus       102 ~~~~-v~~i~~--~~~~~~v~~~~~~~~~~~~~d~vvlAtG~~~~~~  145 (338)
T 3itj_A          102 ITET-VSKVDL--SSKPFKLWTEFNEDAEPVTTDAIILATGASAKRM  145 (338)
T ss_dssp             ECSC-EEEEEC--SSSSEEEEETTCSSSCCEEEEEEEECCCEEECCC
T ss_pred             EEeE-EEEEEE--cCCEEEEEEEecCCCcEEEeCEEEECcCCCcCCC
Confidence            9998 999987  333345665   3667899999999999877543

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=98.63  E-value=1.7e-07  Score=86.26  Aligned_cols=100  Identities=14%  Similarity=0.133  Sum_probs=80.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccC--CccC--------CCC---CCHHHHHHHHHHHHhcCcEEEcCCeEEE
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPE--PWCM--------PRL---FTADIAAFYEGYYANKGIKIIKGTVAVG  229 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~--~~~~--------~~~---~~~~~~~~l~~~l~~~GV~v~~~~~v~~  229 (433)
                      .+++|||+|+.|+.+|..|++.|.+|+++++.  ..+.        +..   ...++.+.+.+.+++.|++++. ++|.+
T Consensus        16 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~   94 (323)
T 3f8d_A           16 FDVIIVGLGPAAYGAALYSARYMLKTLVIGETPGGQLTEAGIVDDYLGLIEIQASDMIKVFNKHIEKYEVPVLL-DIVEK   94 (323)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSTTGGGGGCCEECCSTTSTTEEHHHHHHHHHHHHHTTTCCEEE-SCEEE
T ss_pred             cCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCeecccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEE-EEEEE
Confidence            48999999999999999999999999999985  1110        111   1357888888899999999999 89999


Q ss_pred             EEecCCCcEEEEEeCCCcEEECCEEEEcccCccChh
Q 013952          230 FTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS  265 (433)
Q Consensus       230 i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~  265 (433)
                      +..  ++....+.+.++.++.+|.+|+|+|..|...
T Consensus        95 i~~--~~~~~~v~~~~g~~~~~d~lvlAtG~~~~~~  128 (323)
T 3f8d_A           95 IEN--RGDEFVVKTKRKGEFKADSVILGIGVKRRKL  128 (323)
T ss_dssp             EEE--C--CEEEEESSSCEEEEEEEEECCCCEECCC
T ss_pred             EEe--cCCEEEEEECCCCEEEcCEEEECcCCCCccC
Confidence            987  3333568888888999999999999887653

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=98.62  E-value=5.4e-08  Score=95.29  Aligned_cols=120  Identities=17%  Similarity=0.234  Sum_probs=71.9

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC---cc---------ccccCCCC---CC---CCCCc
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPA---LS---------KAYLFPEG---TA---RLPGF   65 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~---~~---------~~~~~~~~---~~---~~~~~   65 (433)
                      +++||+||||||+|+++|..|+++|.+   |+|+|+...+.....   +.         -++.....   ..   .+.+.
T Consensus        10 ~~~dVlIVGaGpaGl~~A~~La~~G~~---v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~   86 (500)
T 2qa1_A           10 SDAAVIVVGAGPAGMMLAGELRLAGVE---VVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGEVETSTQGHFGGL   86 (500)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTCC---EEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCSCCBCCEEEETTE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCC---EEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHhccccccccccce
Confidence            468999999999999999999999998   999999821111110   00         00000000   00   00000


Q ss_pred             ccccC--C------------CCCCCCHhHHHhCCcEEEeCceEEEEECCCCE--EEeCCCc---EEecceEEEccCCCcc
Q 013952           66 HVCVG--S------------GGERLLPEWYKEKGIELILSTEIVRADIASKT--LLSATGL---IFKYQILVIATGSTVL  126 (433)
Q Consensus        66 ~~~~~--~------------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~~~~~~---~~~~d~lvlAtG~~~~  126 (433)
                      .....  .            .....+.+.+.+.++++..++++.++..++..  +++.++.   ++++|+||.|.|....
T Consensus        87 ~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S~  166 (500)
T 2qa1_A           87 PIDFGVLEGAWQAAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDGAGVTVEVRGPEGKHTLRAAYLVGCDGGRSS  166 (500)
T ss_dssp             EEEGGGSTTGGGCEEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECCCTTCH
T ss_pred             ecccccCCCCCCceeecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcCCeEEEEEEcCCCCEEEEeCEEEECCCcchH
Confidence            00000  0            00111223345679999999999998765553  4455554   7999999999998653

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=98.61  E-value=1.9e-07  Score=88.98  Aligned_cols=99  Identities=18%  Similarity=0.207  Sum_probs=79.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC---------------------------CC-------------
Q 013952          162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP---------------------------RL-------------  201 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~---------------------------~~-------------  201 (433)
                      ...|+|||+|+.|+.+|..|++.|.+|+++++.+.+..                           .+             
T Consensus        27 ~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  106 (417)
T 3v76_A           27 KQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALARYRPQDF  106 (417)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHHHSCHHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHHhcCHHHH
Confidence            45899999999999999999999999999988654210                           00             


Q ss_pred             -----------------------CCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcc
Q 013952          202 -----------------------FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGV  258 (433)
Q Consensus       202 -----------------------~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~  258 (433)
                                             ...++.+.+.+.+++.||+++++++|+++..+++  ...|.+.+| ++.||.||+|+
T Consensus       107 ~~~~~~~Gi~~~~~~~g~~~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~--~~~V~~~~g-~i~ad~VIlAt  183 (417)
T 3v76_A          107 VALVERHGIGWHEKTLGQLFCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTAS--GFRVTTSAG-TVDAASLVVAS  183 (417)
T ss_dssp             HHHHHHTTCCEEECSTTEEEESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETT--EEEEEETTE-EEEESEEEECC
T ss_pred             HHHHHHcCCCcEEeeCCEEeeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCC--EEEEEECCc-EEEeeEEEECC
Confidence                                   0125667788888889999999999999987333  367888887 89999999999


Q ss_pred             cCccC
Q 013952          259 GGRPL  263 (433)
Q Consensus       259 G~~p~  263 (433)
                      |..+.
T Consensus       184 G~~S~  188 (417)
T 3v76_A          184 GGKSI  188 (417)
T ss_dssp             CCSSC
T ss_pred             CCccC
Confidence            97763

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.61  E-value=1.2e-07  Score=87.69  Aligned_cols=101  Identities=15%  Similarity=0.154  Sum_probs=81.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC---------------CCC---CCHHHHHHHHHHHHhcCcEEEcC
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM---------------PRL---FTADIAAFYEGYYANKGIKIIKG  224 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~---------------~~~---~~~~~~~~l~~~l~~~GV~v~~~  224 (433)
                      .+|+|||+|+.|+.+|..|++.|.+|+++++.+.+.               +.+   ...++.+.+.+.+++.|++++++
T Consensus         8 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (332)
T 3lzw_A            8 YDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSALYPEKYIYDVAGFPKIRAQELINNLKEQMAKFDQTICLE   87 (332)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHHCTTSEECCSTTCSSEEHHHHHHHHHHHHTTSCCEEECS
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceehhcCCCceEeccCCCCCCCHHHHHHHHHHHHHHhCCcEEcc
Confidence            589999999999999999999999999999876321               110   13678888888889999999999


Q ss_pred             CeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC---ccChh
Q 013952          225 TVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG---RPLIS  265 (433)
Q Consensus       225 ~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~---~p~~~  265 (433)
                      ++|.++....+ ....+.+.+|+ +.+|.+|+|+|.   .|...
T Consensus        88 ~~v~~i~~~~~-~~~~v~~~~g~-~~~d~vVlAtG~~~~~p~~~  129 (332)
T 3lzw_A           88 QAVESVEKQAD-GVFKLVTNEET-HYSKTVIITAGNGAFKPRKL  129 (332)
T ss_dssp             CCEEEEEECTT-SCEEEEESSEE-EEEEEEEECCTTSCCEECCC
T ss_pred             CEEEEEEECCC-CcEEEEECCCE-EEeCEEEECCCCCcCCCCCC
Confidence            99999987333 24578888875 999999999998   66543

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=98.60  E-value=2.1e-07  Score=91.96  Aligned_cols=60  Identities=13%  Similarity=0.318  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHHh-cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccCh
Q 013952          204 ADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI  264 (433)
Q Consensus       204 ~~~~~~l~~~l~~-~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~  264 (433)
                      ..+.+.+.+.+++ .||+++.+ +|+++..++++.+..|.+.+|.++.+|.||.|+|.+...
T Consensus       175 ~~l~~~L~~~a~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~S~~  235 (526)
T 2pyx_A          175 AKFSQLLTEHCTQKLGVTHIRD-HVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAKSLL  235 (526)
T ss_dssp             HHHHHHHHHHHHHTSCCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGGCCC
T ss_pred             HHHHHHHHHHHHhcCCCEEEEe-EEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcchHH
Confidence            5677788888888 89999999 699998755666678888887789999999999986543

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=98.60  E-value=2.6e-08  Score=97.21  Aligned_cols=56  Identities=21%  Similarity=0.399  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013952          204 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR  261 (433)
Q Consensus       204 ~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~  261 (433)
                      ..+.+.+.+.+++.|++++++++|++|..+++ ....|.+. +.++.+|.||+|++..
T Consensus       234 ~~l~~~l~~~l~~~g~~i~~~~~V~~i~~~~~-~~~~v~~~-~~~~~ad~vv~a~p~~  289 (477)
T 3nks_A          234 EMLPQALETHLTSRGVSVLRGQPVCGLSLQAE-GRWKVSLR-DSSLEADHVISAIPAS  289 (477)
T ss_dssp             THHHHHHHHHHHHTTCEEECSCCCCEEEECGG-GCEEEECS-SCEEEESEEEECSCHH
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEEcCC-ceEEEEEC-CeEEEcCEEEECCCHH
Confidence            46788888999999999999999999987333 33467664 4579999999999853

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=98.59  E-value=2.7e-07  Score=85.53  Aligned_cols=97  Identities=20%  Similarity=0.243  Sum_probs=78.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC-------C-----------CCCCHHHHHHHHHHHHhcCcEEEcC
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------P-----------RLFTADIAAFYEGYYANKGIKIIKG  224 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~-------~-----------~~~~~~~~~~l~~~l~~~GV~v~~~  224 (433)
                      .+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.       +           .....++.+.+.+.+++.+++++++
T Consensus         6 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~   85 (335)
T 2zbw_A            6 TDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLTALYPEKYIYDVAGFPKVYAKDLVKGLVEQVAPFNPVYSLG   85 (335)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHGGGCCEEEES
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeccCCCceeeccCCCCCCCHHHHHHHHHHHHHHcCCEEEeC
Confidence            579999999999999999999999999999865431       0           0012567778888888889999999


Q ss_pred             CeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013952          225 TVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR  261 (433)
Q Consensus       225 ~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~  261 (433)
                      ++|.+++..++  ...+.+.+|+++.+|.+|+|+|..
T Consensus        86 ~~v~~i~~~~~--~~~v~~~~g~~~~~~~lv~AtG~~  120 (335)
T 2zbw_A           86 ERAETLEREGD--LFKVTTSQGNAYTAKAVIIAAGVG  120 (335)
T ss_dssp             CCEEEEEEETT--EEEEEETTSCEEEEEEEEECCTTS
T ss_pred             CEEEEEEECCC--EEEEEECCCCEEEeCEEEECCCCC
Confidence            99999987322  456788888889999999999984

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=98.59  E-value=4e-09  Score=101.36  Aligned_cols=59  Identities=20%  Similarity=0.197  Sum_probs=51.6

Q ss_pred             CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013952          203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR  261 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~  261 (433)
                      ..++.+.+.+.+++.|++++++++|++|..++++++.+|++.+|+++.||.||++++..
T Consensus       255 ~~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~g~v~gV~~~~G~~i~Ad~VI~a~~~~  313 (475)
T 3p1w_A          255 LGGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPSYV  313 (475)
T ss_dssp             TTHHHHHHHHHHHHC--CEESSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECGGGC
T ss_pred             HHHHHHHHHHHHHHcCCEEEeCCeEEEEEEecCCeEEEEEECCCcEEECCEEEECCCcc
Confidence            35789999999999999999999999998755788889999999899999999999987

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=98.59  E-value=4.2e-08  Score=97.18  Aligned_cols=37  Identities=27%  Similarity=0.414  Sum_probs=33.2

Q ss_pred             CCCCcCeEEEECCCHHHHHHHHHHHH---cCCCCCcEEEEcCC
Q 013952            1 MAEKSFKYVILGGGVSAGYAAREFAK---QGVKPGELAIISKE   40 (433)
Q Consensus         1 Mm~~~~dvvIIGgG~aGl~aA~~l~~---~g~~~~~V~lie~~   40 (433)
                      |+++.+||+|||||++|+++|..|++   .|.+   |+|||+.
T Consensus         1 M~~~~~dVvIVGgG~aGl~aA~~La~~~~~G~~---V~liE~~   40 (538)
T 2aqj_A            1 MNKPIKNIVIVGGGTAGWMAASYLVRALQQQAN---ITLIESA   40 (538)
T ss_dssp             -CCBCCEEEEECCSHHHHHHHHHHHHHCCSSCE---EEEEECS
T ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHhhcCCCCE---EEEECCC
Confidence            65667999999999999999999999   8887   9999997

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=98.59  E-value=4.4e-08  Score=93.14  Aligned_cols=120  Identities=18%  Similarity=0.162  Sum_probs=71.8

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCC----CCCCCC-cccc---ccCCCC--------CCCCCCccc-
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVA----PYERPA-LSKA---YLFPEG--------TARLPGFHV-   67 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~----~~~~~~-~~~~---~~~~~~--------~~~~~~~~~-   67 (433)
                      ++||+|||||++|+++|..|++.|++   |+|+|+...    ...+.. +...   .+....        ......+.. 
T Consensus         2 ~~dV~IvGaG~aGl~~A~~L~~~G~~---v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~   78 (394)
T 1k0i_A            2 KTQVAIIGAGPSGLLLGQLLHKAGID---NVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIA   78 (394)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCC---EEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEE
T ss_pred             CccEEEECCCHHHHHHHHHHHHCCCC---EEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHHHHhcCCccceEEEE
Confidence            47999999999999999999999987   999998821    101100 0000   000000        000000000 


Q ss_pred             --------c----c-CCC--------CCCCCHhHHHhCCcEEEeCceEEEEECCC---CEEEe-CCCc--EEecceEEEc
Q 013952           68 --------C----V-GSG--------GERLLPEWYKEKGIELILSTEIVRADIAS---KTLLS-ATGL--IFKYQILVIA  120 (433)
Q Consensus        68 --------~----~-~~~--------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~---~~v~~-~~~~--~~~~d~lvlA  120 (433)
                              .    . +..        ....+.+.+.+.+++++.+++|.++..++   ..|++ .+|+  ++++|.||.|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~~g~~~~~~a~~vV~A  158 (394)
T 1k0i_A           79 FAGQRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGC  158 (394)
T ss_dssp             ETTEEEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEEC
T ss_pred             ECCceEEeccccccCCCceEEechHHHHHHHHHHHHhcCCeEEeceeEEEEEEecCCceEEEEecCCcEEEEEeCEEEEC
Confidence                    0    0 000        01112233445799999999999998642   35666 6776  7999999999


Q ss_pred             cCCCccc
Q 013952          121 TGSTVLR  127 (433)
Q Consensus       121 tG~~~~~  127 (433)
                      +|.....
T Consensus       159 dG~~S~v  165 (394)
T 1k0i_A          159 DGFHGIS  165 (394)
T ss_dssp             CCTTCST
T ss_pred             CCCCcHH
Confidence            9976543

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.58  E-value=3.8e-07  Score=83.50  Aligned_cols=98  Identities=19%  Similarity=0.256  Sum_probs=77.6

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCC-eEEEEccCCc-----------cCCC----CCCHHHHHHHHHHHHhcCcEEEcCCeE
Q 013952          164 KAVVVGGGYIGLELSAALKINNI-DVSMVYPEPW-----------CMPR----LFTADIAAFYEGYYANKGIKIIKGTVA  227 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g~-~V~li~~~~~-----------~~~~----~~~~~~~~~l~~~l~~~GV~v~~~~~v  227 (433)
                      +++|||+|+.|+.+|..|++.|. +|+++++...           ..+.    ....++.+.+.+.+++.|++++. .++
T Consensus         3 dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~-~~v   81 (311)
T 2q0l_A            3 DCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGMPGGQITGSSEIENYPGVKEVVSGLDFMQPWQEQCFRFGLKHEM-TAV   81 (311)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSSEEEECSSSTTCGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHHTTSCEEEC-SCE
T ss_pred             eEEEECccHHHHHHHHHHHHCCCCcEEEEcCCCCCcccccccccccCCCCcccCCHHHHHHHHHHHHHHcCCEEEE-EEE
Confidence            68999999999999999999999 9999987421           0111    11256778888888999999998 789


Q ss_pred             EEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccCh
Q 013952          228 VGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI  264 (433)
Q Consensus       228 ~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~  264 (433)
                      .++..  ++....+.+.+|+++.+|.+|+|+|.+|..
T Consensus        82 ~~i~~--~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~  116 (311)
T 2q0l_A           82 QRVSK--KDSHFVILAEDGKTFEAKSVIIATGGSPKR  116 (311)
T ss_dssp             EEEEE--ETTEEEEEETTSCEEEEEEEEECCCEEECC
T ss_pred             EEEEE--cCCEEEEEEcCCCEEECCEEEECCCCCCCC
Confidence            99886  233356777888899999999999987654

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=98.58  E-value=4.5e-07  Score=84.96  Aligned_cols=99  Identities=17%  Similarity=0.253  Sum_probs=80.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc-------CC--------C---CCCHHHHHHHHHHHHhcCcEEEc
Q 013952          162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC-------MP--------R---LFTADIAAFYEGYYANKGIKIIK  223 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~-------~~--------~---~~~~~~~~~l~~~l~~~GV~v~~  223 (433)
                      ..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+       .+        .   ....++.+.+.+.+++.|+++++
T Consensus        14 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~   93 (360)
T 3ab1_A           14 MRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAALYPEKHIYDVAGFPEVPAIDLVESLWAQAERYNPDVVL   93 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHHTTCCEEEC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCcccccCCCcccccCCCCCCCCHHHHHHHHHHHHHHhCCEEEc
Confidence            358999999999999999999999999999986532       11        0   01267788888888999999999


Q ss_pred             CCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013952          224 GTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR  261 (433)
Q Consensus       224 ~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~  261 (433)
                      +++|.++...+++ ...|.+.+|+++.+|.+|+|+|..
T Consensus        94 ~~~v~~i~~~~~~-~~~v~~~~g~~~~~~~li~AtG~~  130 (360)
T 3ab1_A           94 NETVTKYTKLDDG-TFETRTNTGNVYRSRAVLIAAGLG  130 (360)
T ss_dssp             SCCEEEEEECTTS-CEEEEETTSCEEEEEEEEECCTTC
T ss_pred             CCEEEEEEECCCc-eEEEEECCCcEEEeeEEEEccCCC
Confidence            9999999873332 356888888899999999999983

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=98.57  E-value=3.5e-07  Score=90.43  Aligned_cols=103  Identities=20%  Similarity=0.216  Sum_probs=83.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC--------CC------------C----------------CCHH
Q 013952          162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM--------PR------------L----------------FTAD  205 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~--------~~------------~----------------~~~~  205 (433)
                      ..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.        +.            .                ..++
T Consensus        21 ~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~~~~~~e  100 (549)
T 4ap3_A           21 SYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYATQPE  100 (549)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSSSCBHHH
T ss_pred             CCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccCCCCHHH
Confidence            3589999999999999999999999999999854321        00            0                1246


Q ss_pred             HHHHHHHHHHhcCc--EEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEccc--CccCh
Q 013952          206 IAAFYEGYYANKGI--KIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVG--GRPLI  264 (433)
Q Consensus       206 ~~~~l~~~l~~~GV--~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G--~~p~~  264 (433)
                      +.+.+.+.+++.|+  +++++++|+++..++++....|.+.+|+++.+|.||+|+|  .+|..
T Consensus       101 i~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~~  163 (549)
T 4ap3_A          101 ILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNANT  163 (549)
T ss_dssp             HHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEEECCC
T ss_pred             HHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCCCCCC
Confidence            77888888899998  8999999999987555556789999999999999999999  55554

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=98.57  E-value=1.4e-07  Score=92.26  Aligned_cols=120  Identities=18%  Similarity=0.227  Sum_probs=72.2

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC-c--c---------ccccCCCC---C---CCCCCc
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPA-L--S---------KAYLFPEG---T---ARLPGF   65 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~-~--~---------~~~~~~~~---~---~~~~~~   65 (433)
                      .++||+||||||+|+++|..|+++|.+   |+|+|+...+..... .  .         -++.....   .   ..+.+.
T Consensus        11 ~~~dVlIVGaGpaGl~~A~~La~~G~~---v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~   87 (499)
T 2qa2_A           11 SDASVIVVGAGPAGLMLAGELRLGGVD---VMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGPVETSTQGHFGGR   87 (499)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCSCCEESEEEETTE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCC---EEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHhccccccceecce
Confidence            358999999999999999999999998   999999821111110 0  0         00000000   0   000000


Q ss_pred             ccccC----CC----------CCCCCHhHHHhCCcEEEeCceEEEEECCCC--EEEeCCCc---EEecceEEEccCCCcc
Q 013952           66 HVCVG----SG----------GERLLPEWYKEKGIELILSTEIVRADIASK--TLLSATGL---IFKYQILVIATGSTVL  126 (433)
Q Consensus        66 ~~~~~----~~----------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~---~~~~d~lvlAtG~~~~  126 (433)
                      .....    ..          ....+.+.+.+.++++..++++.++..++.  ++++.++.   ++++|+||.|.|....
T Consensus        88 ~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S~  167 (499)
T 2qa2_A           88 PVDFGVLEGAHYGVKAVPQSTTESVLEEWALGRGAELLRGHTVRALTDEGDHVVVEVEGPDGPRSLTTRYVVGCDGGRST  167 (499)
T ss_dssp             EEEGGGSTTCCCEEEEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECSSCEEEEEECSSCEEEEEEEEEEECCCTTCH
T ss_pred             ecccccCCCCCCceEecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCcEEEEeCEEEEccCcccH
Confidence            00000    00          011123334567999999999999876554  45555554   7999999999998653

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=98.56  E-value=4.1e-07  Score=89.77  Aligned_cols=102  Identities=22%  Similarity=0.177  Sum_probs=82.8

Q ss_pred             CcEEEECCCHHHHHHHHHHH-hCCCeEEEEccCCccC--------CC------------CC----------------CHH
Q 013952          163 GKAVVVGGGYIGLELSAALK-INNIDVSMVYPEPWCM--------PR------------LF----------------TAD  205 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~-~~g~~V~li~~~~~~~--------~~------------~~----------------~~~  205 (433)
                      .+|+|||+|+.|+.+|..|. +.|.+|+++++.+.+.        +.            .+                .++
T Consensus         9 ~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~e   88 (540)
T 3gwf_A            9 VDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYITQPE   88 (540)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBSEEEHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCcccCCCHHH
Confidence            47999999999999999999 9999999999865321        00            01                236


Q ss_pred             HHHHHHHHHHhcCc--EEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC--ccCh
Q 013952          206 IAAFYEGYYANKGI--KIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG--RPLI  264 (433)
Q Consensus       206 ~~~~l~~~l~~~GV--~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~--~p~~  264 (433)
                      +.+.+.+.+++.|+  .++++++|.++..++++....|.+.+|+++.+|.||+|+|.  +|..
T Consensus        89 i~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s~p~~  151 (540)
T 3gwf_A           89 ILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLSAINF  151 (540)
T ss_dssp             HHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSCCSBCC
T ss_pred             HHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcccccCCC
Confidence            77788888899998  89999999999885555567899999989999999999994  5543

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=98.56  E-value=7.8e-08  Score=90.86  Aligned_cols=101  Identities=22%  Similarity=0.340  Sum_probs=77.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC-C-CCC---------HHHHHHHHHHHHhcCcEEEcCCeEEE
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP-R-LFT---------ADIAAFYEGYYANKGIKIIKGTVAVG  229 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~-~-~~~---------~~~~~~l~~~l~~~GV~v~~~~~v~~  229 (433)
                      +.-+|+|||+|+.|+.+|..|...+.+|+++++.+.+.- + .++         .++.....+.+++.||+++++++|++
T Consensus         8 ~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y~~~~l~~~l~g~~~~~~l~~~~~~~~~~~~i~~~~~~~V~~   87 (385)
T 3klj_A            8 KSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYRPRLNEIIAKNKSIDDILIKKNDWYEKNNIKVITSEFATS   87 (385)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCBCGGGHHHHHHSCCCGGGTBSSCHHHHHHTTCEEECSCCEEE
T ss_pred             CCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCcccChhhHHHcCCCCHHHccCCCHHHHHHCCCEEEeCCEEEE
Confidence            345899999999999999999888899999988765321 0 011         12222345567889999999999999


Q ss_pred             EEecCCCcEEEEEeCCCcEEECCEEEEcccCccChh
Q 013952          230 FTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS  265 (433)
Q Consensus       230 i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~  265 (433)
                      ++.  +.+  .|.+.+|+++.+|.+|+|||.+|...
T Consensus        88 id~--~~~--~v~~~~g~~~~yd~lvlAtG~~p~~p  119 (385)
T 3klj_A           88 IDP--NNK--LVTLKSGEKIKYEKLIIASGSIANKI  119 (385)
T ss_dssp             EET--TTT--EEEETTSCEEECSEEEECCCEEECCC
T ss_pred             EEC--CCC--EEEECCCCEEECCEEEEecCCCcCCC
Confidence            986  443  57888999999999999999887653

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=98.56  E-value=9.2e-08  Score=91.32  Aligned_cols=120  Identities=17%  Similarity=0.182  Sum_probs=69.2

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC-Cc--c------------------------c-cccC
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERP-AL--S------------------------K-AYLF   55 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~-~~--~------------------------~-~~~~   55 (433)
                      +++||+|||||++|+++|..|+++|++   |+|+|+...+.... ..  .                        . .+..
T Consensus        22 ~~~dV~IVGaG~aGl~~A~~La~~G~~---V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~   98 (407)
T 3rp8_A           22 GHMKAIVIGAGIGGLSAAVALKQSGID---CDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMETFGGPLRRMAYRD   98 (407)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSCC----CEEEECHHHHHHHHHTTCHHHHHHHSCCCCEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCC---EEEEeCCCCCCCcCeeEEECHHHHHHHHHCCCHHHHHhhcCCCcceEEEE
Confidence            368999999999999999999999987   99999982111000 00  0                        0 0000


Q ss_pred             CCCCCCCCCcccc-----cCCCCC----CCCHhHHHh--CCcEEEeCceEEEEECCCC--EEEeCCCcEEecceEEEccC
Q 013952           56 PEGTARLPGFHVC-----VGSGGE----RLLPEWYKE--KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATG  122 (433)
Q Consensus        56 ~~~~~~~~~~~~~-----~~~~~~----~~~~~~~~~--~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG  122 (433)
                      ......+..+...     .+....    ..+...+.+  ..++++.++.|..+..++.  +|++.+++++.+|.||.|+|
T Consensus        99 ~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG  178 (407)
T 3rp8_A           99 FRSGENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGRDSVQFGKRVTRCEEDADGVTVWFTDGSSASGDLLIAADG  178 (407)
T ss_dssp             TTTCCEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCGGGEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCC
T ss_pred             CCCCCEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCcCEEEECCEEEEEEecCCcEEEEEcCCCEEeeCEEEECCC
Confidence            0000000000000     000000    011111211  1178889999999887665  45677888999999999999


Q ss_pred             CCcc
Q 013952          123 STVL  126 (433)
Q Consensus       123 ~~~~  126 (433)
                      ....
T Consensus       179 ~~S~  182 (407)
T 3rp8_A          179 SHSA  182 (407)
T ss_dssp             TTCS
T ss_pred             cChH
Confidence            7654

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=98.56  E-value=3.7e-07  Score=82.91  Aligned_cols=100  Identities=16%  Similarity=0.175  Sum_probs=77.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc---------CCC---CCCHHHHHHHHHHHHhc-CcEEEcCCeEEE
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC---------MPR---LFTADIAAFYEGYYANK-GIKIIKGTVAVG  229 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~---------~~~---~~~~~~~~~l~~~l~~~-GV~v~~~~~v~~  229 (433)
                      .+++|||+|+.|+.+|..|++.|.+|+++++.+..         .+.   ....++.+.+.+.+++. +++++.. ++.+
T Consensus         3 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~   81 (297)
T 3fbs_A            3 FDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFASHSHGFLGQDGKAPGEIIAEARRQIERYPTIHWVEG-RVTD   81 (297)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGGGCSCCCSSTTCTTCCHHHHHHHHHHHHTTCTTEEEEES-CEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCcccccchhhcCCcCCCCCCHHHHHHHHHHHHHhcCCeEEEEe-EEEE
Confidence            47999999999999999999999999999864321         011   11246777888888876 7888755 8999


Q ss_pred             EEecCCCcEEEEEeCCCcEEECCEEEEcccCccChh
Q 013952          230 FTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS  265 (433)
Q Consensus       230 i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~  265 (433)
                      +...+  ....+.+.+++++.+|.+|+|+|.+|+..
T Consensus        82 i~~~~--~~~~v~~~~g~~~~~d~vviAtG~~~~~~  115 (297)
T 3fbs_A           82 AKGSF--GEFIVEIDGGRRETAGRLILAMGVTDELP  115 (297)
T ss_dssp             EEEET--TEEEEEETTSCEEEEEEEEECCCCEEECC
T ss_pred             EEEcC--CeEEEEECCCCEEEcCEEEECCCCCCCCC
Confidence            98732  33678888998999999999999887543

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.56  E-value=3.5e-07  Score=83.70  Aligned_cols=101  Identities=15%  Similarity=0.188  Sum_probs=79.5

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEccCC--ccC---------C--CCCCHHHHHHHHHHHHhcCcEEEcCCeEEEE
Q 013952          164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEP--WCM---------P--RLFTADIAAFYEGYYANKGIKIIKGTVAVGF  230 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~--~~~---------~--~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i  230 (433)
                      +++|||+|+.|+.+|..|++.|.+|+++++..  .+.         .  ....+++.+.+.+.+++.|++++.++++..+
T Consensus         3 dvvIIG~G~aGl~aA~~l~~~g~~v~li~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i   82 (310)
T 1fl2_A            3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKL   82 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCEEEE
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCceeccccccccccCcCCCCHHHHHHHHHHHHHHcCCeEEccCEEEEE
Confidence            68999999999999999999999999996531  110         0  0012577888888899999999999999999


Q ss_pred             EecCC-CcEEEEEeCCCcEEECCEEEEcccCccCh
Q 013952          231 TTNAD-GEVKEVKLKDGRTLEADIVVVGVGGRPLI  264 (433)
Q Consensus       231 ~~~~~-g~~~~v~~~~g~~i~~d~vi~a~G~~p~~  264 (433)
                      ....+ +....+.+.+|+++.+|.+|+|+|.+|..
T Consensus        83 ~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~  117 (310)
T 1fl2_A           83 IPAAVEGGLHQIETASGAVLKARSIIVATGAKWRN  117 (310)
T ss_dssp             ECCSSTTCCEEEEETTSCEEEEEEEEECCCEEECC
T ss_pred             EecccCCceEEEEECCCCEEEeCEEEECcCCCcCC
Confidence            75322 23467888888889999999999987754

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=98.55  E-value=2.5e-07  Score=87.05  Aligned_cols=33  Identities=15%  Similarity=0.379  Sum_probs=31.3

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ++||+|||||++|+++|++|+++|++   |+|+|+.
T Consensus         2 ~~dvvIIG~Gi~Gl~~A~~La~~G~~---V~vle~~   34 (372)
T 2uzz_A            2 KYDLIIIGSGSVGAAAGYYATRAGLN---VLMTDAH   34 (372)
T ss_dssp             CEEEEESCTTHHHHHHHHHHHHTTCC---EEEECSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCe---EEEEecC
Confidence            48999999999999999999999987   9999998

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=98.55  E-value=1.1e-07  Score=91.62  Aligned_cols=100  Identities=21%  Similarity=0.326  Sum_probs=79.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHh---CCCeEEEEccCCccCCC----------CCCHHHHHHHHHHHHhcCcEEEcCCeEEE
Q 013952          163 GKAVVVGGGYIGLELSAALKI---NNIDVSMVYPEPWCMPR----------LFTADIAAFYEGYYANKGIKIIKGTVAVG  229 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~---~g~~V~li~~~~~~~~~----------~~~~~~~~~l~~~l~~~GV~v~~~~~v~~  229 (433)
                      ++|+|||+|+.|+.+|..|++   .|.+|+++++.+.+.-.          ....++...+.+.+++.||+++. .++++
T Consensus         5 ~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~   83 (437)
T 3sx6_A            5 AHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYVERKGIHFIA-QSAEQ   83 (437)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEECGGGHHHHHHTSSCHHHHEEECHHHHHTTTCEEEC-SCEEE
T ss_pred             CcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCcccCCccccccCccCHHHHHHHHHHHHHHCCCEEEE-eEEEE
Confidence            689999999999999999999   79999999998764211          11234444567788889999985 58999


Q ss_pred             EEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh
Q 013952          230 FTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF  267 (433)
Q Consensus       230 i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~  267 (433)
                      ++.  +++  .|.+.+|+++.+|.+|+|+|.+|+...+
T Consensus        84 id~--~~~--~V~~~~g~~i~~d~lviAtG~~~~~~~i  117 (437)
T 3sx6_A           84 IDA--EAQ--NITLADGNTVHYDYLMIATGPKLAFENV  117 (437)
T ss_dssp             EET--TTT--EEEETTSCEEECSEEEECCCCEECGGGS
T ss_pred             EEc--CCC--EEEECCCCEEECCEEEECCCCCcCcccC
Confidence            976  333  5778888889999999999999876543

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=98.54  E-value=3.6e-08  Score=94.11  Aligned_cols=33  Identities=21%  Similarity=0.391  Sum_probs=31.3

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHc--CCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQ--GVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~--g~~~~~V~lie~~   40 (433)
                      ++||+|||||++|+++|++|+++  |++   |+|||+.
T Consensus        36 ~~dVvIIGaGi~Gls~A~~La~~~pG~~---V~vlE~~   70 (405)
T 3c4n_A           36 AFDIVVIGAGRMGAACAFYLRQLAPGRS---LLLVEEG   70 (405)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHCTTSC---EEEECSS
T ss_pred             cCCEEEECCcHHHHHHHHHHHhcCCCCe---EEEEeCC
Confidence            48999999999999999999999  987   9999997

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=98.54  E-value=4.9e-09  Score=100.77  Aligned_cols=53  Identities=23%  Similarity=0.243  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013952          205 DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG  260 (433)
Q Consensus       205 ~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~  260 (433)
                      .+.....+..+..+.+++++++|++|..+ ++.+ .|.+.+|+ +.+|.||+|++.
T Consensus       204 g~~~l~~~l~~~l~~~v~~~~~V~~i~~~-~~~v-~v~~~~g~-~~ad~Vv~a~~~  256 (424)
T 2b9w_A          204 GTQAMFEHLNATLEHPAERNVDITRITRE-DGKV-HIHTTDWD-RESDVLVLTVPL  256 (424)
T ss_dssp             CHHHHHHHHHHHSSSCCBCSCCEEEEECC-TTCE-EEEESSCE-EEESEEEECSCH
T ss_pred             hHHHHHHHHHHhhcceEEcCCEEEEEEEE-CCEE-EEEECCCe-EEcCEEEECCCH
Confidence            34444455555666788999999999873 3343 58888874 899999999985

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=98.54  E-value=6.1e-07  Score=89.49  Aligned_cols=59  Identities=19%  Similarity=0.217  Sum_probs=47.2

Q ss_pred             CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEECCEEEEcccCc
Q 013952          203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGGR  261 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~---~~g~--~i~~d~vi~a~G~~  261 (433)
                      ...+...+.+.+++.||++++++.+.++..++++++.+|..   .+|+  .+.++.||+|+|..
T Consensus       142 g~~l~~~L~~~~~~~gv~i~~~~~v~~L~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg~  205 (588)
T 2wdq_A          142 GHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGA  205 (588)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEEECCCCC
T ss_pred             HHHHHHHHHHHHHhCCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCeEEEEEcCEEEECCCCC
Confidence            35677788888888999999999999998743677777764   4564  58999999999953

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=98.54  E-value=3.4e-07  Score=89.76  Aligned_cols=34  Identities=18%  Similarity=0.489  Sum_probs=31.7

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      +++||+|||||++|+++|+.|+++|++   |+|+|+.
T Consensus         2 ~~~DVvIIGgGi~G~~~A~~La~~G~~---V~llE~~   35 (501)
T 2qcu_A            2 ETKDLIVIGGGINGAGIAADAAGRGLS---VLMLEAQ   35 (501)
T ss_dssp             -CBSEEEECCSHHHHHHHHHHHHTTCC---EEEECSS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCC---EEEEECC
Confidence            368999999999999999999999987   9999997

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=98.53  E-value=6.4e-07  Score=84.59  Aligned_cols=99  Identities=26%  Similarity=0.286  Sum_probs=81.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCC----------------------------------------
Q 013952          162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL----------------------------------------  201 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~----------------------------------------  201 (433)
                      ..+|+|||+|+.|+.+|..|++.|.+|+++++.+......                                        
T Consensus        11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~~   90 (379)
T 3alj_A           11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGSHTPPTYETWMHNKS   90 (379)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHTTCBCCSCEEEEETTEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHhhCCCccceEEEeCCce
Confidence            4689999999999999999999999999999865432100                                        


Q ss_pred             ---C-----------CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChh
Q 013952          202 ---F-----------TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS  265 (433)
Q Consensus       202 ---~-----------~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~  265 (433)
                         +           ...+.+.+.+.+++.||+++++++|++++.  ++   .|++.+|+++.+|.||.|+|..+...
T Consensus        91 ~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~--~~---~v~~~~g~~~~ad~vV~AdG~~s~vr  163 (379)
T 3alj_A           91 VSKETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADP--VG---RLTLQTGEVLEADLIVGADGVGSKVR  163 (379)
T ss_dssp             EEEECGGGCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEET--TT---EEEETTSCEEECSEEEECCCTTCHHH
T ss_pred             eeeccCCCCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEe--CC---EEEECCCCEEEcCEEEECCCccHHHH
Confidence               0           045577788888889999999999999986  44   57788888999999999999877553

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=98.53  E-value=7.8e-07  Score=86.26  Aligned_cols=103  Identities=17%  Similarity=0.227  Sum_probs=78.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHh---CCCe---EEEEccCCccC--------------------------------------
Q 013952          163 GKAVVVGGGYIGLELSAALKI---NNID---VSMVYPEPWCM--------------------------------------  198 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~---~g~~---V~li~~~~~~~--------------------------------------  198 (433)
                      ++|+|||+|+.|+.+|..|.+   .|.+   |+++++.+.+.                                      
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~~~~   82 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEFA   82 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGTCBT
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhcccC
Confidence            589999999999999999999   9999   99999865321                                      


Q ss_pred             ------------CCC-CCHHHHHHHHHHHHhcCcE--EEcCCeEEEEEecCCCcEEEEEeCC---C--cEEECCEEEEcc
Q 013952          199 ------------PRL-FTADIAAFYEGYYANKGIK--IIKGTVAVGFTTNADGEVKEVKLKD---G--RTLEADIVVVGV  258 (433)
Q Consensus       199 ------------~~~-~~~~~~~~l~~~l~~~GV~--v~~~~~v~~i~~~~~g~~~~v~~~~---g--~~i~~d~vi~a~  258 (433)
                                  +.+ -..++.+.+.+.+++.|++  ++++++|.++...+++....|.+.+   |  .++.+|.||+|+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~VVvAt  162 (464)
T 2xve_A           83 DYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCCT  162 (464)
T ss_dssp             TBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECC
T ss_pred             CCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEEEECC
Confidence                        000 0145667788888888998  9999999999874433244566544   4  578999999999


Q ss_pred             c--CccChh
Q 013952          259 G--GRPLIS  265 (433)
Q Consensus       259 G--~~p~~~  265 (433)
                      |  .+|+..
T Consensus       163 G~~s~p~~p  171 (464)
T 2xve_A          163 GHFSTPYVP  171 (464)
T ss_dssp             CSSSSBCCC
T ss_pred             CCCCCCccC
Confidence            9  677654

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=98.52  E-value=6.5e-07  Score=85.00  Aligned_cols=100  Identities=14%  Similarity=0.144  Sum_probs=79.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC--------------C---C---C---------------------
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM--------------P---R---L---------------------  201 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~--------------~---~---~---------------------  201 (433)
                      ..|+|||+|+.|+.+|..+++.|.+|+++++.+.+.              .   .   +                     
T Consensus         5 ~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   84 (401)
T 2gqf_A            5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWDFI   84 (401)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHHHH
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCCHHHHH
Confidence            479999999999999999999999999999865320              0   0   0                     


Q ss_pred             ----------------------CCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecC---CCcEEEEEeCCCcEEECCEEEE
Q 013952          202 ----------------------FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNA---DGEVKEVKLKDGRTLEADIVVV  256 (433)
Q Consensus       202 ----------------------~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~---~g~~~~v~~~~g~~i~~d~vi~  256 (433)
                                            ...++.+.+.+.+++.||+++++++|+++..++   ++. ..|.+.++ ++.+|.||+
T Consensus        85 ~~~~~~Gi~~~~~~~g~~~p~~~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~-~~v~~~~g-~i~ad~VVl  162 (401)
T 2gqf_A           85 SLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVR-FVLQVNST-QWQCKNLIV  162 (401)
T ss_dssp             HHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCC-EEEEETTE-EEEESEEEE
T ss_pred             HHHHhCCCceEECcCCEEccCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCe-EEEEECCC-EEECCEEEE
Confidence                                  134566778888889999999999999998631   233 46777776 799999999


Q ss_pred             cccCccCh
Q 013952          257 GVGGRPLI  264 (433)
Q Consensus       257 a~G~~p~~  264 (433)
                      |+|..+..
T Consensus       163 AtG~~s~p  170 (401)
T 2gqf_A          163 ATGGLSMP  170 (401)
T ss_dssp             CCCCSSCG
T ss_pred             CCCCccCC
Confidence            99988743

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=98.51  E-value=2.8e-07  Score=91.96  Aligned_cols=33  Identities=21%  Similarity=0.369  Sum_probs=31.2

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHc------CCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQ------GVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~------g~~~~~V~lie~~   40 (433)
                      .+||+|||||+||+++|..|++.      |++   |+|||+.
T Consensus        35 ~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~---V~vlEk~   73 (584)
T 2gmh_A           35 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLR---VCLVEKA   73 (584)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCC---EEEECSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHhcccccCCCCc---EEEEeCC
Confidence            48999999999999999999998      887   9999998

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.51  E-value=1.6e-07  Score=91.09  Aligned_cols=99  Identities=13%  Similarity=0.224  Sum_probs=74.4

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      ..+++|||||++|+.+|..|++.|.+   |+++++.....                  +....    .....+.+.+++.
T Consensus       167 ~~~vvIiGgG~~g~e~A~~l~~~g~~---V~lv~~~~~~l------------------~~~~~----~~~~~l~~~l~~~  221 (455)
T 2yqu_A          167 PKRLIVVGGGVIGLELGVVWHRLGAE---VIVLEYMDRIL------------------PTMDL----EVSRAAERVFKKQ  221 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSC------------------TTSCH----HHHHHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCE---EEEEecCCccc------------------cccCH----HHHHHHHHHHHHC
Confidence            36899999999999999999999876   99999881111                  00000    0012345667788


Q ss_pred             CcEEEeCceEEEEECCCCE--EEeCCCcEEecceEEEccCCCcccc
Q 013952           85 GIELILSTEIVRADIASKT--LLSATGLIFKYQILVIATGSTVLRL  128 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d~lvlAtG~~~~~~  128 (433)
                      |++++.++.+..++.+++.  +.+.+++++++|.+|+|+|.+|..+
T Consensus       222 Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vv~A~G~~p~~~  267 (455)
T 2yqu_A          222 GLTIRTGVRVTAVVPEAKGARVELEGGEVLEADRVLVAVGRRPYTE  267 (455)
T ss_dssp             TCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEECCT
T ss_pred             CCEEEECCEEEEEEEeCCEEEEEECCCeEEEcCEEEECcCCCcCCC
Confidence            9999999999999876554  4455788899999999999988653

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=98.51  E-value=3.5e-07  Score=84.69  Aligned_cols=99  Identities=12%  Similarity=0.148  Sum_probs=76.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEcc----CCcc------------CCC----CCCHHHHHHHHHHHHhcCcEEE
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYP----EPWC------------MPR----LFTADIAAFYEGYYANKGIKII  222 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~----~~~~------------~~~----~~~~~~~~~l~~~l~~~GV~v~  222 (433)
                      .+++|||+|+.|+.+|..|++.|.+|+++++    ....            .+.    ....++.+.+.+.+++.|++++
T Consensus         9 ~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~   88 (333)
T 1vdc_A            9 TRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTTIF   88 (333)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEEE
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCceeeeccccccCCCCccCCCHHHHHHHHHHHHHHCCCEEE
Confidence            4799999999999999999999999999987    1111            111    1134777888888899999999


Q ss_pred             cCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChh
Q 013952          223 KGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS  265 (433)
Q Consensus       223 ~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~  265 (433)
                      .++ +..+...  +....|.+ ++.++.+|.+|+|+|.+|...
T Consensus        89 ~~~-v~~i~~~--~~~~~v~~-~~~~~~~~~vv~A~G~~~~~~  127 (333)
T 1vdc_A           89 TET-VTKVDFS--SKPFKLFT-DSKAILADAVILAIGAVAKRL  127 (333)
T ss_dssp             CCC-CCEEECS--SSSEEEEC-SSEEEEEEEEEECCCEEECCC
T ss_pred             EeE-EEEEEEc--CCEEEEEE-CCcEEEcCEEEECCCCCcCCC
Confidence            986 8888762  22245666 777899999999999877543

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.50  E-value=1.7e-06  Score=85.15  Aligned_cols=104  Identities=14%  Similarity=0.231  Sum_probs=81.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC--ccC-----------CCCCCHHHHHHHHHHHHhcCcEEEcCCeE
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP--WCM-----------PRLFTADIAAFYEGYYANKGIKIIKGTVA  227 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~--~~~-----------~~~~~~~~~~~l~~~l~~~GV~v~~~~~v  227 (433)
                      ...+++|||+|+.|+.+|..|++.|.+|+++++..  .+.           +....+++.+.+.+.+++.||+++.++++
T Consensus       211 ~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~v~~~~~v  290 (521)
T 1hyu_A          211 DAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGERFGGQVLDTVDIENYISVPKTEGQKLAGALKAHVSDYDVDVIDSQSA  290 (521)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSTTGGGTTCSCBCCBTTBSSBCHHHHHHHHHHHHHTSCEEEECSCCE
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCCCeEEEEECCCCCcccccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEcCCEE
Confidence            35579999999999999999999999999997531  111           01123578888889999999999999999


Q ss_pred             EEEEecCC-CcEEEEEeCCCcEEECCEEEEcccCccCh
Q 013952          228 VGFTTNAD-GEVKEVKLKDGRTLEADIVVVGVGGRPLI  264 (433)
Q Consensus       228 ~~i~~~~~-g~~~~v~~~~g~~i~~d~vi~a~G~~p~~  264 (433)
                      .++....+ +....|.+.+|+++.+|.+|+|+|.+|..
T Consensus       291 ~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~~~  328 (521)
T 1hyu_A          291 SKLVPAATEGGLHQIETASGAVLKARSIIIATGAKWRN  328 (521)
T ss_dssp             EEEECCSSTTSCEEEEETTSCEEEEEEEEECCCEEECC
T ss_pred             EEEEeccCCCceEEEEECCCCEEEcCEEEECCCCCcCC
Confidence            99975221 23467888888899999999999987654

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.50  E-value=6.5e-07  Score=82.56  Aligned_cols=101  Identities=16%  Similarity=0.142  Sum_probs=77.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc-----------cCCCC----CCHHHHHHHHHHHHhcCcEEEcCCeE
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW-----------CMPRL----FTADIAAFYEGYYANKGIKIIKGTVA  227 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~-----------~~~~~----~~~~~~~~l~~~l~~~GV~v~~~~~v  227 (433)
                      .+++|||+|+.|+.+|..|++.|.+|+++++...           ..+.+    ...++.+.+.+.+++.|++++. .++
T Consensus         9 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v   87 (325)
T 2q7v_A            9 YDVVIIGGGPAGLTAAIYTGRAQLSTLILEKGMPGGQIAWSEEVENFPGFPEPIAGMELAQRMHQQAEKFGAKVEM-DEV   87 (325)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTGGGGGCSCBCCSTTCSSCBCHHHHHHHHHHHHHHTTCEEEE-CCE
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCcEEEEeCCCCCcccccccccccCCCCCCCCCHHHHHHHHHHHHHHcCCEEEe-eeE
Confidence            4799999999999999999999999999987621           01111    1246777888888999999998 588


Q ss_pred             EEEEecC-CCcEEEEEeCCCcEEECCEEEEcccCccCh
Q 013952          228 VGFTTNA-DGEVKEVKLKDGRTLEADIVVVGVGGRPLI  264 (433)
Q Consensus       228 ~~i~~~~-~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~  264 (433)
                      .++.... ++....+.+.+|+++.+|.+|+|+|.+|..
T Consensus        88 ~~i~~~~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~  125 (325)
T 2q7v_A           88 QGVQHDATSHPYPFTVRGYNGEYRAKAVILATGADPRK  125 (325)
T ss_dssp             EEEEECTTSSSCCEEEEESSCEEEEEEEEECCCEEECC
T ss_pred             EEEEeccCCCceEEEEECCCCEEEeCEEEECcCCCcCC
Confidence            8888731 221135666778899999999999987754

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=98.47  E-value=6.9e-07  Score=88.16  Aligned_cols=56  Identities=21%  Similarity=0.268  Sum_probs=38.8

Q ss_pred             CCCcEEeCCCCCCCCCCeEEcCccccccccccCccc-ccccHHHHHHHHHHHHHHHhcc
Q 013952          274 NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMR-RVEHVDHARKSAEQAVKTIMAT  331 (433)
Q Consensus       274 ~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~-~~~~~~~A~~~g~~aa~~i~~~  331 (433)
                      ..|+|.+|.+.||++|++||+|+|+....  +|..+ .-.+...+.--|+.|++++...
T Consensus       353 t~GGi~vd~~~~t~I~GLyAaGE~a~~g~--hGanrl~gnsl~~~~vfG~~Ag~~aa~~  409 (540)
T 1chu_A          353 TCGGVMVDDHGRTDVEGLYAIGEVSYTGL--HGANRMASNSLLECLVYGWSAAEDITRR  409 (540)
T ss_dssp             ESCEEECCTTCBCSSBTEEECGGGEECSS--STTSCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ecCcEEECCCCCCccCCEEeccccccccc--cCCCcCcchhHHHHHHHHHHHHHHHHHh
Confidence            56999999999999999999999984211  11111 1123455666788888887654

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=98.47  E-value=1.1e-06  Score=80.23  Aligned_cols=100  Identities=15%  Similarity=0.111  Sum_probs=70.9

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc----------cC--CCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEE
Q 013952          164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPW----------CM--PRLFTADIAAFYEGYYANKGIKIIKGTVAVGFT  231 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~----------~~--~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~  231 (433)
                      .|+|||+|+.|+.+|..+++.|.+|+++++...          +.  +...++++.+...+.+.+.+...+....+..+.
T Consensus         8 DVvIIGaGpAGlsAA~~lar~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (304)
T 4fk1_A            8 DCAVIGAGPAGLNASLVLGRARKQIALFDNNTNRNRVTQNSHGFITRDGIKPEEFKEIGLNEVMKYPSVHYYEKTVVMIT   87 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCGGGGSSCBCCSTTCTTBCHHHHHHHHHHHHTTSTTEEEEECCEEEEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCeeeeecCCccCCCCCCHHHHHHHHHHHHHhcCCEEEEeeEEEEee
Confidence            689999999999999999999999999986431          11  011234566666665655554444444555655


Q ss_pred             ecCCCcEEEEEeCCCcEEECCEEEEcccCccCh
Q 013952          232 TNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI  264 (433)
Q Consensus       232 ~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~  264 (433)
                      ..++ ....+.+.+|+++.+|.+|+|||.+|..
T Consensus        88 ~~~~-~~~~v~~~~g~~~~a~~liiATGs~p~~  119 (304)
T 4fk1_A           88 KQST-GLFEIVTKDHTKYLAERVLLATGMQEEF  119 (304)
T ss_dssp             ECTT-SCEEEEETTCCEEEEEEEEECCCCEEEC
T ss_pred             ecCC-CcEEEEECCCCEEEeCEEEEccCCcccc
Confidence            4233 3357888999999999999999987754

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=98.46  E-value=8.2e-07  Score=87.69  Aligned_cols=102  Identities=12%  Similarity=0.125  Sum_probs=81.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC-------------------------C----------CC-CCHHH
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------------------------P----------RL-FTADI  206 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~-------------------------~----------~~-~~~~~  206 (433)
                      .+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.                         +          .+ ..+++
T Consensus        10 ~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~~~~ei   89 (545)
T 3uox_A           10 LDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFASQPEM   89 (545)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSCBHHHH
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccCCCHHHH
Confidence            479999999999999999999999999999875320                         0          00 12577


Q ss_pred             HHHHHHHHHhcCc--EEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEccc--CccCh
Q 013952          207 AAFYEGYYANKGI--KIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVG--GRPLI  264 (433)
Q Consensus       207 ~~~l~~~l~~~GV--~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G--~~p~~  264 (433)
                      .+.+.+.+++.|+  .++++++|.+++.++++....|.+.+|+++.+|.||+|+|  .+|+.
T Consensus        90 ~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~~  151 (545)
T 3uox_A           90 LRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSASRM  151 (545)
T ss_dssp             HHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC---
T ss_pred             HHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCCCcC
Confidence            7888888888888  8999999999987555556789999998999999999999  55554

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.45  E-value=1.3e-06  Score=81.95  Aligned_cols=98  Identities=19%  Similarity=0.275  Sum_probs=76.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCC-eEEEEccCC------c------c-CCC---------------------------C
Q 013952          163 GKAVVVGGGYIGLELSAALKINNI-DVSMVYPEP------W------C-MPR---------------------------L  201 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~-~V~li~~~~------~------~-~~~---------------------------~  201 (433)
                      .+++|||+|+.|+.+|..|++.|. +|+++++.+      .      + .+.                           .
T Consensus         5 ~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~~Gg~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   84 (369)
T 3d1c_A            5 HKVAIIGAGAAGIGMAITLKDFGITDVIILEKGTVGHSFKHWPKSTRTITPSFTSNGFGMPDMNAISMDTSPAFTFNEEH   84 (369)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSTTHHHHTSCTTCBCSSCCCCCGGGTCCCTTCSSTTCCHHHHHCCSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCCCCCccccCcccccccCcchhcccCCchhhhhccccccccccccccC
Confidence            479999999999999999999999 999998764      0      0 000                           0


Q ss_pred             -CCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccC
Q 013952          202 -FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL  263 (433)
Q Consensus       202 -~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~  263 (433)
                       ...++.+.+.+.+++.|++++++++|.++...+++  ..|.+.++ ++.+|.||+|+|..+.
T Consensus        85 ~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~g-~~~~d~vVlAtG~~~~  144 (369)
T 3d1c_A           85 ISGETYAEYLQVVANHYELNIFENTVVTNISADDAY--YTIATTTE-TYHADYIFVATGDYNF  144 (369)
T ss_dssp             CBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSS--EEEEESSC-CEEEEEEEECCCSTTS
T ss_pred             CCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCe--EEEEeCCC-EEEeCEEEECCCCCCc
Confidence             01356667777888899999999999999873323  46777776 6899999999998654

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=98.45  E-value=3.1e-07  Score=84.11  Aligned_cols=33  Identities=21%  Similarity=0.313  Sum_probs=31.1

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHc--CCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQ--GVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~--g~~~~~V~lie~~   40 (433)
                      .+||+|||||++|+++|.+|+++  |++   |+|+|+.
T Consensus        79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~---V~LiEk~  113 (344)
T 3jsk_A           79 ETDIVIVGAGSCGLSAAYVLSTLRPDLR---ITIVEAG  113 (344)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHCTTSC---EEEEESS
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCE---EEEEeCC
Confidence            58999999999999999999997  877   9999998

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=98.44  E-value=1.5e-07  Score=84.61  Aligned_cols=33  Identities=21%  Similarity=0.413  Sum_probs=31.6

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ++||+|||||||||+||..|+++|++   |+|+|+.
T Consensus         2 t~dV~IIGaGpaGL~aA~~La~~G~~---V~v~Ek~   34 (336)
T 3kkj_A            2 TVPIAIIGTGIAGLSAAQALTAAGHQ---VHLFDKS   34 (336)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCC---EEEECSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCC---EEEEECC
Confidence            38999999999999999999999998   9999998

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=98.44  E-value=3.8e-06  Score=82.23  Aligned_cols=56  Identities=21%  Similarity=0.234  Sum_probs=47.3

Q ss_pred             CHHHHHHHHHHHHhcC-cEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013952          203 TADIAAFYEGYYANKG-IKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG  260 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~G-V~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~  260 (433)
                      ...+.+.+.+.+++.| ++++++++|++|...+++  ..|.+.+|+++.+|.||+|+|.
T Consensus       254 ~~~l~~~l~~~l~~~g~~~i~~~~~V~~i~~~~~~--v~v~~~~g~~~~ad~vI~a~~~  310 (495)
T 2vvm_A          254 QSAFARRFWEEAAGTGRLGYVFGCPVRSVVNERDA--ARVTARDGREFVAKRVVCTIPL  310 (495)
T ss_dssp             HHHHHHHHHHHHHTTTCEEEESSCCEEEEEECSSS--EEEEETTCCEEEEEEEEECCCG
T ss_pred             HHHHHHHHHHHhhhcCceEEEeCCEEEEEEEcCCE--EEEEECCCCEEEcCEEEECCCH
Confidence            3578888888899998 999999999999873333  5688888888999999999995

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=98.44  E-value=3.4e-07  Score=92.20  Aligned_cols=37  Identities=22%  Similarity=0.336  Sum_probs=34.1

Q ss_pred             CCCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      |++..+||||||||.||++||++|++.|.+   |+|||+.
T Consensus         1 M~~~~~DVvVIGgG~AGL~AAl~aae~G~~---V~vlEK~   37 (660)
T 2bs2_A            1 MKVQYCDSLVIGGGLAGLRAAVATQQKGLS---TIVLSLI   37 (660)
T ss_dssp             CCEEECSEEEECCSHHHHHHHHHHHTTTCC---EEEECSS
T ss_pred             CCcccccEEEECchHHHHHHHHHHHHCCCc---EEEEecc
Confidence            665578999999999999999999999987   9999998

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.44  E-value=9.6e-07  Score=81.13  Aligned_cols=98  Identities=12%  Similarity=0.096  Sum_probs=75.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc-----------cCCC----CCCHHHHHHHHHHHHhcCcEEEcCCeE
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW-----------CMPR----LFTADIAAFYEGYYANKGIKIIKGTVA  227 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~-----------~~~~----~~~~~~~~~l~~~l~~~GV~v~~~~~v  227 (433)
                      .+++|||+|+.|+.+|..|++.|.+|+++++...           ..+.    ....++.+.+.+.+++.|++++.++ +
T Consensus         6 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v   84 (320)
T 1trb_A            6 SKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDH-I   84 (320)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECCC-E
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEccCCCCceEecchhhhhCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEee-e
Confidence            4799999999999999999999999999985310           0111    1235777888888899999999986 8


Q ss_pred             EEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccCh
Q 013952          228 VGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI  264 (433)
Q Consensus       228 ~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~  264 (433)
                      ..++.  ++....+ +.++.++.+|.+|+|+|.+|..
T Consensus        85 ~~i~~--~~~~~~v-~~~~~~~~~~~lv~AtG~~~~~  118 (320)
T 1trb_A           85 NKVDL--QNRPFRL-NGDNGEYTCDALIIATGASARY  118 (320)
T ss_dssp             EEEEC--SSSSEEE-EESSCEEEEEEEEECCCEEECC
T ss_pred             eEEEe--cCCEEEE-EeCCCEEEcCEEEECCCCCcCC
Confidence            88876  2222344 5677789999999999987654

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=98.44  E-value=8.5e-08  Score=92.20  Aligned_cols=96  Identities=21%  Similarity=0.329  Sum_probs=72.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCC--CeEEEEccCCccCCCCC----------CHHHHHHHHHHHHhcCcEEEcCCeEEEE
Q 013952          163 GKAVVVGGGYIGLELSAALKINN--IDVSMVYPEPWCMPRLF----------TADIAAFYEGYYANKGIKIIKGTVAVGF  230 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g--~~V~li~~~~~~~~~~~----------~~~~~~~l~~~l~~~GV~v~~~~~v~~i  230 (433)
                      |+|+|||+|+.|+.+|..|.+.+  .+|+++++.+.+.-...          .+++...+.+.+++.||+++.+ +|++|
T Consensus         3 K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~~p~l~~v~~g~~~~~~i~~~~~~~~~~~gv~~i~~-~v~~I   81 (430)
T 3hyw_A            3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKFNIEFINE-KAESI   81 (430)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECGGGHHHHHHTCSCGGGSEEESTTTGGGGTEEEECS-CEEEE
T ss_pred             CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCccCccHHHHhcCCCCHHHhhhcHHHHHHHCCcEEEEe-EEEEE
Confidence            68999999999999999999865  78999998875431101          1112222345567789999876 68999


Q ss_pred             EecCCCcEEEEEeCCCcEEECCEEEEcccCccC
Q 013952          231 TTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL  263 (433)
Q Consensus       231 ~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~  263 (433)
                      +.  +.+  .|++++|+++++|.+|+|+|.++.
T Consensus        82 d~--~~~--~V~~~~g~~i~YD~LViAtG~~~~  110 (430)
T 3hyw_A           82 DP--DAN--TVTTQSGKKIEYDYLVIATGPKLV  110 (430)
T ss_dssp             ET--TTT--EEEETTCCEEECSEEEECCCCEEE
T ss_pred             EC--CCC--EEEECCCCEEECCEEEEeCCCCcc
Confidence            86  443  578899999999999999998653

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.43  E-value=2.4e-07  Score=86.95  Aligned_cols=99  Identities=22%  Similarity=0.314  Sum_probs=73.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC--C--------CCC-HHHHHHHHHHHHhcCcEEEcCCeEEE
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP--R--------LFT-ADIAAFYEGYYANKGIKIIKGTVAVG  229 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~--~--------~~~-~~~~~~l~~~l~~~GV~v~~~~~v~~  229 (433)
                      .+.+++|||+|+.|+.+|..|++.| +|+++++.+....  .        ..+ .++.....+.+++.||+++.++++..
T Consensus         7 ~~~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~g~~v~~   85 (367)
T 1xhc_A            7 HGSKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKL   85 (367)
T ss_dssp             --CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEEE
T ss_pred             CCCcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCCccccchhHHHHhCCCCHHHhccCCHHHHHhCCcEEEECCEEEE
Confidence            4679999999999999999999999 9999998764211  0        001 11222234567788999999999999


Q ss_pred             EEecCCCcEEEEEeCCCcEEECCEEEEcccCccChh
Q 013952          230 FTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS  265 (433)
Q Consensus       230 i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~  265 (433)
                      ++.  +.+  .|. .+|+++.+|.+|+|||.+|+..
T Consensus        86 id~--~~~--~V~-~~g~~~~~d~lViATGs~p~~p  116 (367)
T 1xhc_A           86 IDR--GRK--VVI-TEKGEVPYDTLVLATGARAREP  116 (367)
T ss_dssp             EET--TTT--EEE-ESSCEEECSEEEECCCEEECCC
T ss_pred             EEC--CCC--EEE-ECCcEEECCEEEECCCCCCCCC
Confidence            976  333  344 5677899999999999888653

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=98.43  E-value=3.6e-07  Score=89.98  Aligned_cols=40  Identities=15%  Similarity=0.216  Sum_probs=35.4

Q ss_pred             hCCcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccC
Q 013952           83 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATG  122 (433)
Q Consensus        83 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG  122 (433)
                      +.++++..++.|..|+.+++.+++.+|+++.||++|.++-
T Consensus       234 ~~g~~i~~~~~V~~I~~~~~~v~~~~G~~~~ad~vI~t~P  273 (513)
T 4gde_A          234 KEKTRFGEKGKVTKVNANNKTVTLQDGTTIGYKKLVSTMA  273 (513)
T ss_dssp             GGGEEESGGGCEEEEETTTTEEEETTSCEEEEEEEEECSC
T ss_pred             hcCeeeecceEEEEEEccCCEEEEcCCCEEECCEEEECCC
Confidence            4577888999999999999999999999999999997754

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=98.42  E-value=9.6e-07  Score=84.19  Aligned_cols=97  Identities=16%  Similarity=0.293  Sum_probs=74.9

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      ..+++|||||+.|+-+|..|++.|.+   |+++++...+..+.              ++       ......+.+.+++.
T Consensus       145 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~~~l~~~--------------~~-------~~~~~~l~~~l~~~  200 (408)
T 2gqw_A          145 QSRLLIVGGGVIGLELAATARTAGVH---VSLVETQPRLMSRA--------------AP-------ATLADFVARYHAAQ  200 (408)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSSSSTTT--------------SC-------HHHHHHHHHHHHHT
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCE---EEEEEeCCcccccc--------------cC-------HHHHHHHHHHHHHc
Confidence            46899999999999999999999876   99999882111100              00       00012345677889


Q ss_pred             CcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccc
Q 013952           85 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLR  127 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~  127 (433)
                      |++++.++.+.+++ ++ .|.+.+|+++++|.+|+|+|..|..
T Consensus       201 GV~i~~~~~v~~i~-~~-~v~~~~g~~i~~D~vi~a~G~~p~~  241 (408)
T 2gqw_A          201 GVDLRFERSVTGSV-DG-VVLLDDGTRIAADMVVVGIGVLAND  241 (408)
T ss_dssp             TCEEEESCCEEEEE-TT-EEEETTSCEEECSEEEECSCEEECC
T ss_pred             CcEEEeCCEEEEEE-CC-EEEECCCCEEEcCEEEECcCCCccH
Confidence            99999999999998 44 8888888899999999999988753

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=98.42  E-value=2e-06  Score=84.64  Aligned_cols=61  Identities=18%  Similarity=0.310  Sum_probs=51.4

Q ss_pred             CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccCh
Q 013952          203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI  264 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~  264 (433)
                      ...+.+.+.+.+++.|++++.+ +|+++..++++.+..|.+.+|+++.+|.||.|+|.....
T Consensus       172 ~~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~~  232 (511)
T 2weu_A          172 ADEVARYLSEYAIARGVRHVVD-DVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFRGLL  232 (511)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGGCCC
T ss_pred             HHHHHHHHHHHHHHCCCEEEEC-eEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcchHH
Confidence            3567788888888899999999 999998755677778999888889999999999976543

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.41  E-value=1.7e-06  Score=79.56  Aligned_cols=98  Identities=13%  Similarity=0.120  Sum_probs=75.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc-----------cCCC---CCCHHHHHHHHHHHHhcCcEEEcCCeEE
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW-----------CMPR---LFTADIAAFYEGYYANKGIKIIKGTVAV  228 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~-----------~~~~---~~~~~~~~~l~~~l~~~GV~v~~~~~v~  228 (433)
                      .+++|||+|+.|+.+|..|++.|.+|+++++...           ..+.   ....++.+.+.+.+++.|++++. .++.
T Consensus        17 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~   95 (319)
T 3cty_A           17 FDVVIVGAGAAGFSAAVYAARSGFSVAILDKAVAGGLTAEAPLVENYLGFKSIVGSELAKLFADHAANYAKIREG-VEVR   95 (319)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSTTGGGGGCSCBCCBTTBSSBCHHHHHHHHHHHHHTTSEEEET-CCEE
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCccccccchhhhcCCCcccCHHHHHHHHHHHHHHcCCEEEE-eeEE
Confidence            5799999999999999999999999999987421           0111   11256777888888999999998 6888


Q ss_pred             EEEecCCCcEEEEEeCCCcEEECCEEEEcccCccCh
Q 013952          229 GFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI  264 (433)
Q Consensus       229 ~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~  264 (433)
                      +++..  +....|.+ ++.++.+|.+|+|+|.+|..
T Consensus        96 ~i~~~--~~~~~v~~-~~~~~~~~~li~AtG~~~~~  128 (319)
T 3cty_A           96 SIKKT--QGGFDIET-NDDTYHAKYVIITTGTTHKH  128 (319)
T ss_dssp             EEEEE--TTEEEEEE-SSSEEEEEEEEECCCEEECC
T ss_pred             EEEEe--CCEEEEEE-CCCEEEeCEEEECCCCCccc
Confidence            88762  22244666 55689999999999987654

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=98.41  E-value=3.8e-07  Score=90.70  Aligned_cols=58  Identities=21%  Similarity=0.248  Sum_probs=46.4

Q ss_pred             CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC---CCc--EEECCEEEEcccCc
Q 013952          203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK---DGR--TLEADIVVVGVGGR  261 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~---~g~--~i~~d~vi~a~G~~  261 (433)
                      +..+...+.+.+++.|++++++++|+++.. +++++..|.+.   +|+  ++.||.||+|+|..
T Consensus       187 ~~~l~~~l~~~a~~~Ga~i~~~t~V~~l~~-~~~~v~gV~~~d~~tg~~~~i~A~~VV~AaG~w  249 (571)
T 2rgh_A          187 DARLVIDNIKKAAEDGAYLVSKMKAVGFLY-EGDQIVGVKARDLLTDEVIEIKAKLVINTSGPW  249 (571)
T ss_dssp             HHHHHHHHHHHHHHTTCEEESSEEEEEEEE-ETTEEEEEEEEETTTCCEEEEEBSCEEECCGGG
T ss_pred             hHHHHHHHHHHHHHcCCeEEeccEEEEEEE-eCCEEEEEEEEEcCCCCEEEEEcCEEEECCChh
Confidence            567777788888999999999999999987 35566667653   333  69999999999965

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.40  E-value=5.1e-07  Score=87.26  Aligned_cols=99  Identities=21%  Similarity=0.271  Sum_probs=73.4

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      .++++|||||++|+.+|..|++.|.+   |+++++...+..+      .        ++       ......+.+.+++.
T Consensus       149 ~~~vvIiG~G~~g~e~A~~l~~~g~~---Vtlv~~~~~~l~~------~--------~~-------~~~~~~l~~~l~~~  204 (447)
T 1nhp_A          149 VNNVVVIGSGYIGIEAAEAFAKAGKK---VTVIDILDRPLGV------Y--------LD-------KEFTDVLTEEMEAN  204 (447)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSSTTTT------T--------CC-------HHHHHHHHHHHHTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCe---EEEEecCcccccc------c--------CC-------HHHHHHHHHHHHhC
Confidence            57999999999999999999999876   9999988211110      0        00       00012345667788


Q ss_pred             CcEEEeCceEEEEECCCC--EEEeCCCcEEecceEEEccCCCcccc
Q 013952           85 GIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRL  128 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~~~  128 (433)
                      |++++.++.+..++.+++  .+.+ ++.++++|.+|+|+|.+|..+
T Consensus       205 gv~i~~~~~v~~i~~~~~v~~v~~-~~~~i~~d~vi~a~G~~p~~~  249 (447)
T 1nhp_A          205 NITIATGETVERYEGDGRVQKVVT-DKNAYDADLVVVAVGVRPNTA  249 (447)
T ss_dssp             TEEEEESCCEEEEECSSBCCEEEE-SSCEEECSEEEECSCEEESCG
T ss_pred             CCEEEcCCEEEEEEccCcEEEEEE-CCCEEECCEEEECcCCCCChH
Confidence            999999999999987643  2455 556899999999999988654

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.40  E-value=3.9e-07  Score=88.28  Aligned_cols=97  Identities=19%  Similarity=0.237  Sum_probs=72.1

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      ..+++|||||+.|+.+|..|++.|.+   |+++++......  ...         .           .....+.+.+++.
T Consensus       171 ~~~vvViGgG~~g~e~A~~l~~~g~~---Vtlv~~~~~~l~--~~~---------~-----------~~~~~l~~~l~~~  225 (458)
T 1lvl_A          171 PQHLVVVGGGYIGLELGIAYRKLGAQ---VSVVEARERILP--TYD---------S-----------ELTAPVAESLKKL  225 (458)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCE---EEEECSSSSSST--TSC---------H-----------HHHHHHHHHHHHH
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCe---EEEEEcCCcccc--ccC---------H-----------HHHHHHHHHHHHC
Confidence            36899999999999999999999876   999998811110  000         0           0012345667788


Q ss_pred             CcEEEeCceEEEEECCCCEEEeC--CC--cEEecceEEEccCCCcccc
Q 013952           85 GIELILSTEIVRADIASKTLLSA--TG--LIFKYQILVIATGSTVLRL  128 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~~v~~~--~~--~~~~~d~lvlAtG~~~~~~  128 (433)
                      |++++.++.+..++. ++ +.+.  +|  .++.+|.+++|+|.+|..+
T Consensus       226 gv~i~~~~~v~~i~~-~~-v~v~~~~G~~~~i~~D~vv~a~G~~p~~~  271 (458)
T 1lvl_A          226 GIALHLGHSVEGYEN-GC-LLANDGKGGQLRLEADRVLVAVGRRPRTK  271 (458)
T ss_dssp             TCEEETTCEEEEEET-TE-EEEECSSSCCCEECCSCEEECCCEEECCS
T ss_pred             CCEEEECCEEEEEEe-CC-EEEEECCCceEEEECCEEEECcCCCcCCC
Confidence            999999999999987 44 4333  45  5899999999999988754

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=98.39  E-value=1.6e-06  Score=83.70  Aligned_cols=102  Identities=21%  Similarity=0.137  Sum_probs=76.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC--eEEEEccCCccC----CC---------------------------------C
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNI--DVSMVYPEPWCM----PR---------------------------------L  201 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~--~V~li~~~~~~~----~~---------------------------------~  201 (433)
                      ...+|+|||+|+.|+.+|..|++.|.  +|+++++.+.+.    ..                                 .
T Consensus         5 ~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~~~   84 (447)
T 2gv8_A            5 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPL   84 (447)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCC
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeecCCCCCCcccccccccccccccccccccccCCccCch
Confidence            35789999999999999999999999  999998764220    00                                 0


Q ss_pred             --------------C--------------CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCC---Cc---
Q 013952          202 --------------F--------------TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD---GR---  247 (433)
Q Consensus       202 --------------~--------------~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~---g~---  247 (433)
                                    +              ..++.+.+.+.+++.++.++++++|++++..  +....|++.+   |+   
T Consensus        85 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~--~~~~~V~~~~~~~G~~~~  162 (447)
T 2gv8_A           85 YRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKK--DGSWVVTYKGTKAGSPIS  162 (447)
T ss_dssp             CTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEE--TTEEEEEEEESSTTCCEE
T ss_pred             hhhhccCCCHHHhccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeC--CCeEEEEEeecCCCCeeE
Confidence                          0              1245666777777778889999999999873  2234566654   66   


Q ss_pred             EEECCEEEEcccC--ccCh
Q 013952          248 TLEADIVVVGVGG--RPLI  264 (433)
Q Consensus       248 ~i~~d~vi~a~G~--~p~~  264 (433)
                      ++.+|.||+|+|.  .|+.
T Consensus       163 ~~~~d~VVvAtG~~s~p~~  181 (447)
T 2gv8_A          163 KDIFDAVSICNGHYEVPYI  181 (447)
T ss_dssp             EEEESEEEECCCSSSSBCB
T ss_pred             EEEeCEEEECCCCCCCCCC
Confidence            7999999999997  6654

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=98.39  E-value=1.2e-06  Score=81.23  Aligned_cols=99  Identities=12%  Similarity=0.105  Sum_probs=76.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC---cc--------CCC----CCCHHHHHHHHHHHHhcCcEEEcCCe
Q 013952          162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP---WC--------MPR----LFTADIAAFYEGYYANKGIKIIKGTV  226 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~---~~--------~~~----~~~~~~~~~l~~~l~~~GV~v~~~~~  226 (433)
                      ..+++|||+|+.|+.+|..|++.|.+|+++++..   .+        .+.    ....++.+.+.+.+++.|++++.++ 
T Consensus        14 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~-   92 (335)
T 2a87_A           14 VRDVIVIGSGPAGYTAALYAARAQLAPLVFEGTSFGGALMTTTDVENYPGFRNGITGPELMDEMREQALRFGADLRMED-   92 (335)
T ss_dssp             CEEEEEECCHHHHHHHHHHHHHTTCCCEEECCSSCSCGGGSCSCBCCSTTCTTCBCHHHHHHHHHHHHHHTTCEEECCC-
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCceeccchhhhcCCCCCCCCHHHHHHHHHHHHHHcCCEEEEee-
Confidence            4589999999999999999999999999998531   10        111    1125777888888889999999987 


Q ss_pred             EEEEEecCCCcEEEE-EeCCCcEEECCEEEEcccCccCh
Q 013952          227 AVGFTTNADGEVKEV-KLKDGRTLEADIVVVGVGGRPLI  264 (433)
Q Consensus       227 v~~i~~~~~g~~~~v-~~~~g~~i~~d~vi~a~G~~p~~  264 (433)
                      +.+++. .+.  ..+ .+.+++++.+|.+|+|+|.+|..
T Consensus        93 v~~i~~-~~~--~~v~~~~~g~~~~~d~lviAtG~~~~~  128 (335)
T 2a87_A           93 VESVSL-HGP--LKSVVTADGQTHRARAVILAMGAAARY  128 (335)
T ss_dssp             EEEEEC-SSS--SEEEEETTSCEEEEEEEEECCCEEECC
T ss_pred             EEEEEe-CCc--EEEEEeCCCCEEEeCEEEECCCCCccC
Confidence            888875 222  345 67788899999999999987654

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.38  E-value=5.6e-07  Score=85.74  Aligned_cols=97  Identities=16%  Similarity=0.344  Sum_probs=74.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCC--eEEEEccCCccCC-------CC-----CCHHHHHHHHHHHHhcCcEEEcCCeEE
Q 013952          163 GKAVVVGGGYIGLELSAALKINNI--DVSMVYPEPWCMP-------RL-----FTADIAAFYEGYYANKGIKIIKGTVAV  228 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~--~V~li~~~~~~~~-------~~-----~~~~~~~~l~~~l~~~GV~v~~~~~v~  228 (433)
                      ++++|||+|+.|+.+|..|++.|.  +|+++++.+...-       .+     ...++.....+.+++.+|+++. +++.
T Consensus         2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~-~~v~   80 (404)
T 3fg2_P            2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLSKAYLKSGGDPNSLMFRPEKFFQDQAIELIS-DRMV   80 (404)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBCSGGGGTGGGGSCCCTTSSBSSCHHHHHHTTEEEEC-CCEE
T ss_pred             CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCCCCccCCHHHHCCCCCHHHccCCCHHHHHhCCCEEEE-EEEE
Confidence            689999999999999999999998  8999988753210       00     0112223345667889999999 8999


Q ss_pred             EEEecCCCcEEEEEeCCCcEEECCEEEEcccCccCh
Q 013952          229 GFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI  264 (433)
Q Consensus       229 ~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~  264 (433)
                      +++.  +++  .+.+.+|+++.+|.+|+|||.+|..
T Consensus        81 ~id~--~~~--~v~~~~g~~~~~d~lvlAtG~~p~~  112 (404)
T 3fg2_P           81 SIDR--EGR--KLLLASGTAIEYGHLVLATGARNRM  112 (404)
T ss_dssp             EEET--TTT--EEEESSSCEEECSEEEECCCEEECC
T ss_pred             EEEC--CCC--EEEECCCCEEECCEEEEeeCCCccC
Confidence            9986  443  5778888899999999999987754

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=98.38  E-value=3.5e-06  Score=84.01  Aligned_cols=101  Identities=21%  Similarity=0.246  Sum_probs=78.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCC-----------------------------------------
Q 013952          162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR-----------------------------------------  200 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~-----------------------------------------  200 (433)
                      ...|+|||+|..|+.+|..+++.|.+|+++++.+.....                                         
T Consensus       126 ~~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~~  205 (571)
T 1y0p_A          126 TVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNIND  205 (571)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCceEEeCCCHHHHHhCCCCCHHHHHHHHHHhcCCCCC
Confidence            358999999999999999999999999999876432100                                         


Q ss_pred             ----------------------------------------------CCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecC
Q 013952          201 ----------------------------------------------LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNA  234 (433)
Q Consensus       201 ----------------------------------------------~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~  234 (433)
                                                                    .....+.+.+.+.+++.||+++++++|+++..++
T Consensus       206 ~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~g~~~g~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~  285 (571)
T 1y0p_A          206 PALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDD  285 (571)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEECT
T ss_pred             HHHHHHHHHccHHHHHHHHhcCCCCccCcccCCcCCCeeEecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEeeEeEEcC
Confidence                                                          0012455667777888999999999999998744


Q ss_pred             CCcEEEEEeC--CCc--EEECCEEEEcccCcc
Q 013952          235 DGEVKEVKLK--DGR--TLEADIVVVGVGGRP  262 (433)
Q Consensus       235 ~g~~~~v~~~--~g~--~i~~d~vi~a~G~~p  262 (433)
                      ++++..|...  +|+  ++.+|.||+|+|...
T Consensus       286 ~g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~~  317 (571)
T 1y0p_A          286 KGTVKGILVKGMYKGYYWVKADAVILATGGFA  317 (571)
T ss_dssp             TSCEEEEEEEETTTEEEEEECSEEEECCCCCT
T ss_pred             CCeEEEEEEEeCCCcEEEEECCeEEEeCCCcc
Confidence            4777767664  565  689999999999643

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=98.38  E-value=7.8e-07  Score=84.66  Aligned_cols=101  Identities=25%  Similarity=0.352  Sum_probs=74.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCC--CeEEEEccCCccCCCCCCHHHHH---------HHHHHHHhcCcEEEcCCeEEEE
Q 013952          162 NGKAVVVGGGYIGLELSAALKINN--IDVSMVYPEPWCMPRLFTADIAA---------FYEGYYANKGIKIIKGTVAVGF  230 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g--~~V~li~~~~~~~~~~~~~~~~~---------~l~~~l~~~GV~v~~~~~v~~i  230 (433)
                      +|+|+|||+|+.|+.+|..|++.+  .+|+++++.+..........+..         .-.+.+.+.||+++.+ +|++|
T Consensus         2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~v~~g~~~~~~~~~~~~~~~~~gv~~i~~-~v~~i   80 (401)
T 3vrd_B            2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCYMSNEVIGGDRELASLRVGYDGLRAHGIQVVHD-SALGI   80 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECSTTHHHHHHTSSCGGGGEECSHHHHHTTCEEECS-CEEEE
T ss_pred             cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCccCHHHHhcCCCCHHHHhhCHHHHHHCCCEEEEe-EEEEE
Confidence            689999999999999999998866  58999998775432211111110         1123456789999866 68888


Q ss_pred             EecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh
Q 013952          231 TTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF  267 (433)
Q Consensus       231 ~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~  267 (433)
                      +.  +.+  .+.+.+|+++.+|.+|+|+|.+++...+
T Consensus        81 d~--~~~--~v~~~~g~~i~yd~LviAtG~~~~~~~i  113 (401)
T 3vrd_B           81 DP--DKK--LVKTAGGAEFAYDRCVVAPGIDLLYDKI  113 (401)
T ss_dssp             ET--TTT--EEEETTSCEEECSEEEECCCEEECGGGS
T ss_pred             Ec--cCc--EEEecccceeecceeeeccCCccccCCc
Confidence            76  443  5778899999999999999998876543

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=98.38  E-value=1.5e-06  Score=82.88  Aligned_cols=32  Identities=25%  Similarity=0.521  Sum_probs=30.5

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      .+|+||||||+||++|..|+++|++   |+|+|+.
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G~~---v~v~Er~   33 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHGIK---VTIYERN   33 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCE---EEEECSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCC---EEEEecC
Confidence            4899999999999999999999998   9999998

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.37  E-value=1e-06  Score=84.69  Aligned_cols=101  Identities=27%  Similarity=0.428  Sum_probs=75.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCC--eEEEEccCCccCC-------CCC-----CHHHHHHHHHHHHhcCcEEEcCCeE
Q 013952          162 NGKAVVVGGGYIGLELSAALKINNI--DVSMVYPEPWCMP-------RLF-----TADIAAFYEGYYANKGIKIIKGTVA  227 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g~--~V~li~~~~~~~~-------~~~-----~~~~~~~l~~~l~~~GV~v~~~~~v  227 (433)
                      ..+++|||+|+.|+.+|..|++.|.  +|+++++.+.+.-       .+.     ..++.....+.+++.||+++.++.|
T Consensus         4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v   83 (431)
T 1q1r_A            4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQV   83 (431)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCCE
T ss_pred             CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCcCCCCcHHHhCCCCChHHhcccCHHHHHhCCCEEEeCCEE
Confidence            4689999999999999999999998  7999987654210       000     0111112245677899999999999


Q ss_pred             EEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhh
Q 013952          228 VGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISL  266 (433)
Q Consensus       228 ~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~  266 (433)
                      ..++.  +++  .|.+.+|+++.+|.+|+|+|.+|+...
T Consensus        84 ~~i~~--~~~--~v~~~~g~~~~~d~lviAtG~~p~~~~  118 (431)
T 1q1r_A           84 TAINR--DRQ--QVILSDGRALDYDRLVLATGGRPRPLP  118 (431)
T ss_dssp             EEEET--TTT--EEEETTSCEEECSEEEECCCEEECCCG
T ss_pred             EEEEC--CCC--EEEECCCCEEECCEEEEcCCCCccCCC
Confidence            99986  333  577788889999999999998886543

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=98.37  E-value=2.7e-07  Score=88.16  Aligned_cols=98  Identities=21%  Similarity=0.284  Sum_probs=74.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHh---CCCeEEEEccCCccCCC----------CCCHHHHHHHHHHHHhcCcEEEcCCeEEE
Q 013952          163 GKAVVVGGGYIGLELSAALKI---NNIDVSMVYPEPWCMPR----------LFTADIAAFYEGYYANKGIKIIKGTVAVG  229 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~---~g~~V~li~~~~~~~~~----------~~~~~~~~~l~~~l~~~GV~v~~~~~v~~  229 (433)
                      ++|+|||+|+.|+.+|..|++   .|.+|+++++.+.+...          ....++...+.+.+++.|++++.+ ++.+
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~   80 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLSEALPEKGIQFQEG-TVEK   80 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECCSSCCCCSSCCCCCCEEEEHHHHTGGGTCEEEEC-EEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceeccchhhcccCCcCHHHHHHHHHHHHhhCCeEEEEe-eEEE
Confidence            479999999999999999999   89999999987653210          012344455677778899999988 8899


Q ss_pred             EEecCCCcEEEEEeCCCc----EEECCEEEEcccCccChh
Q 013952          230 FTTNADGEVKEVKLKDGR----TLEADIVVVGVGGRPLIS  265 (433)
Q Consensus       230 i~~~~~g~~~~v~~~~g~----~i~~d~vi~a~G~~p~~~  265 (433)
                      ++.  +++  .|.+.+++    ++.+|.+|+|+|.+|+..
T Consensus        81 i~~--~~~--~V~~~~g~~~~~~~~~d~lViAtG~~~~~~  116 (409)
T 3h8l_A           81 IDA--KSS--MVYYTKPDGSMAEEEYDYVIVGIGAHLATE  116 (409)
T ss_dssp             EET--TTT--EEEEECTTSCEEEEECSEEEECCCCEECGG
T ss_pred             EeC--CCC--EEEEccCCcccceeeCCEEEECCCCCcCcc
Confidence            876  443  35555554    499999999999988764

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=98.37  E-value=1.9e-06  Score=81.83  Aligned_cols=101  Identities=17%  Similarity=0.158  Sum_probs=79.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC----------------------------------------C--
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP----------------------------------------R--  200 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~----------------------------------------~--  200 (433)
                      .+|+|||+|+.|+.+|..|++.|.+|+++++.+....                                        .  
T Consensus         7 ~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~g~~   86 (399)
T 2x3n_A            7 IDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGRVRHELEVYHDGEL   86 (399)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTTCEEECEEEEEETTEE
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhCCCcceeEEEeCCCCE
Confidence            4799999999999999999999999999987643200                                        0  


Q ss_pred             -----------------CCCHHHHHHHHHHHHhc-CcEEEcCCeEEEEEecCCCcEE-EEEeCCCcEEECCEEEEcccCc
Q 013952          201 -----------------LFTADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVK-EVKLKDGRTLEADIVVVGVGGR  261 (433)
Q Consensus       201 -----------------~~~~~~~~~l~~~l~~~-GV~v~~~~~v~~i~~~~~g~~~-~v~~~~g~~i~~d~vi~a~G~~  261 (433)
                                       .....+.+.+.+.+++. |++++++++|++++.+++ .+. .+++.+|+++.+|.||.|.|..
T Consensus        87 ~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~-~v~g~v~~~~g~~~~ad~vV~AdG~~  165 (399)
T 2x3n_A           87 LRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDER-HAIDQVRLNDGRVLRPRVVVGADGIA  165 (399)
T ss_dssp             EEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTT-SCEEEEEETTSCEEEEEEEEECCCTT
T ss_pred             EEecchHHhcccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCC-ceEEEEEECCCCEEECCEEEECCCCC
Confidence                             01125566777777777 999999999999987433 332 6888888899999999999987


Q ss_pred             cCh
Q 013952          262 PLI  264 (433)
Q Consensus       262 p~~  264 (433)
                      +..
T Consensus       166 s~v  168 (399)
T 2x3n_A          166 SYV  168 (399)
T ss_dssp             CHH
T ss_pred             hHH
Confidence            654

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.37  E-value=1.1e-06  Score=83.03  Aligned_cols=99  Identities=14%  Similarity=0.201  Sum_probs=74.7

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      ..+++|||+|+.|+.+|..|++.|.+   |+++++...+..+      .        .+.       .....+.+.+++.
T Consensus       145 ~~~v~ViGgG~~g~e~A~~l~~~g~~---Vtlv~~~~~~~~~------~--------~~~-------~~~~~l~~~l~~~  200 (384)
T 2v3a_A          145 KRRVLLLGAGLIGCEFANDLSSGGYQ---LDVVAPCEQVMPG------L--------LHP-------AAAKAVQAGLEGL  200 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSSSSTT------T--------SCH-------HHHHHHHHHHHTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCe---EEEEecCcchhhc------c--------cCH-------HHHHHHHHHHHHc
Confidence            46899999999999999999999876   9999988211110      0        000       0012345667788


Q ss_pred             CcEEEeCceEEEEECCCC--EEEeCCCcEEecceEEEccCCCccc
Q 013952           85 GIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLR  127 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~~  127 (433)
                      |++++.++.+..++.++.  .+.+.+++++++|.+|+|+|..|..
T Consensus       201 gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vv~a~G~~p~~  245 (384)
T 2v3a_A          201 GVRFHLGPVLASLKKAGEGLEAHLSDGEVIPCDLVVSAVGLRPRT  245 (384)
T ss_dssp             TCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEECC
T ss_pred             CCEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEECcCCCcCH
Confidence            999999999999876544  5677788899999999999988764

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=98.37  E-value=4.6e-07  Score=86.55  Aligned_cols=37  Identities=16%  Similarity=0.393  Sum_probs=30.8

Q ss_pred             CCCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      || ..+||+|||||++|+++|..|++.|.++  |+|+|+.
T Consensus         1 M~-~~~dVvIVGaG~aGl~~A~~L~~~G~~~--v~v~E~~   37 (410)
T 3c96_A            1 MS-EPIDILIAGAGIGGLSCALALHQAGIGK--VTLLESS   37 (410)
T ss_dssp             ----CCEEEEECCSHHHHHHHHHHHHTTCSE--EEEEESS
T ss_pred             CC-CCCeEEEECCCHHHHHHHHHHHhCCCCe--EEEEECC
Confidence            55 4689999999999999999999987532  8999998

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.36  E-value=6.5e-07  Score=86.53  Aligned_cols=99  Identities=16%  Similarity=0.054  Sum_probs=75.1

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      ..+++|||||+.|+.+|..|++.|.+   |+++++......  .+..                    .....+.+.+++.
T Consensus       167 ~~~vvViGgG~~g~e~A~~l~~~g~~---Vtlv~~~~~~l~--~~~~--------------------~~~~~l~~~l~~~  221 (450)
T 1ges_A          167 PERVAVVGAGYIGVELGGVINGLGAK---THLFEMFDAPLP--SFDP--------------------MISETLVEVMNAE  221 (450)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSST--TSCH--------------------HHHHHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCE---EEEEEeCCchhh--hhhH--------------------HHHHHHHHHHHHC
Confidence            46899999999999999999999876   999998711110  0000                    0012345667788


Q ss_pred             CcEEEeCceEEEEECCC---CEEEeCCCcEEecceEEEccCCCcccc
Q 013952           85 GIELILSTEIVRADIAS---KTLLSATGLIFKYQILVIATGSTVLRL  128 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~---~~v~~~~~~~~~~d~lvlAtG~~~~~~  128 (433)
                      |++++.++.+..++.++   ..+.+.+|+++++|.+|+|+|.+|...
T Consensus       222 Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vv~a~G~~p~~~  268 (450)
T 1ges_A          222 GPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGREPAND  268 (450)
T ss_dssp             SCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEESCT
T ss_pred             CCEEEeCCEEEEEEEeCCcEEEEEECCCcEEEcCEEEECCCCCcCCC
Confidence            99999999999998653   257778888899999999999988653

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.35  E-value=1.5e-06  Score=82.81  Aligned_cols=99  Identities=21%  Similarity=0.407  Sum_probs=75.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCe--EEEEccCCccCCC--CCCHHHH---------HHHHHHHHhcCcEEEcCCeEEE
Q 013952          163 GKAVVVGGGYIGLELSAALKINNID--VSMVYPEPWCMPR--LFTADIA---------AFYEGYYANKGIKIIKGTVAVG  229 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~--V~li~~~~~~~~~--~~~~~~~---------~~l~~~l~~~GV~v~~~~~v~~  229 (433)
                      ++++|||+|+.|+.+|..|.+.|.+  |+++++.+...-.  .+...+.         ....+.+++.||+++.++++..
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   82 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPILAEADWYGEARIDMLTGPEVTA   82 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBCSGGGGTHHHHTSSSSCCBSSCTTHHHHTTCEEEESCCEEE
T ss_pred             CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcCCccccHHHhCCCCCHHHhcCCHHHHHHCCCEEEeCCEEEE
Confidence            4899999999999999999999987  9999887643210  0111111         1223456788999999999999


Q ss_pred             EEecCCCcEEEEEeCCCcEEECCEEEEcccCccChh
Q 013952          230 FTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS  265 (433)
Q Consensus       230 i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~  265 (433)
                      ++.  +.+  .|.+.+|+++.+|.+|+|||.+|...
T Consensus        83 id~--~~~--~v~~~~g~~~~~d~lvlAtG~~p~~~  114 (410)
T 3ef6_A           83 LDV--QTR--TISLDDGTTLSADAIVIATGSRARTM  114 (410)
T ss_dssp             EET--TTT--EEEETTSCEEECSEEEECCCEEECCC
T ss_pred             EEC--CCC--EEEECCCCEEECCEEEEccCCcccCC
Confidence            986  332  57788888999999999999877643

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=98.35  E-value=2.2e-06  Score=85.25  Aligned_cols=100  Identities=23%  Similarity=0.260  Sum_probs=77.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCC------------------------------------------
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR------------------------------------------  200 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~------------------------------------------  200 (433)
                      -.|+|||+|..|+.+|..|++.|.+|+++++.+.....                                          
T Consensus       122 ~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~s~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~~~~~~~~  201 (566)
T 1qo8_A          122 TQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQNDI  201 (566)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCceeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCCCCH
Confidence            37999999999999999999999999999876532100                                          


Q ss_pred             ---------------------------------------------CCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCC
Q 013952          201 ---------------------------------------------LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD  235 (433)
Q Consensus       201 ---------------------------------------------~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~  235 (433)
                                                                   .....+.+.+.+.+++.||+++++++|.++..+++
T Consensus       202 ~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~~~~~~~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~  281 (566)
T 1qo8_A          202 KLVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDD  281 (566)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEEECTT
T ss_pred             HHHHHHHhccHHHHHHHHhcCCccccccccCCCCCCceeecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEECCC
Confidence                                                         00123456677778889999999999999987332


Q ss_pred             CcEEEEEeC--CCc--EEECCEEEEcccCcc
Q 013952          236 GEVKEVKLK--DGR--TLEADIVVVGVGGRP  262 (433)
Q Consensus       236 g~~~~v~~~--~g~--~i~~d~vi~a~G~~p  262 (433)
                      +++..|.+.  +|+  .+.+|.||+|+|...
T Consensus       282 g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~s  312 (566)
T 1qo8_A          282 HSVVGAVVHGKHTGYYMIGAKSVVLATGGYG  312 (566)
T ss_dssp             SBEEEEEEEETTTEEEEEEEEEEEECCCCCT
T ss_pred             CcEEEEEEEeCCCcEEEEEcCEEEEecCCcc
Confidence            777767664  665  689999999999544

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=98.35  E-value=5.9e-07  Score=89.76  Aligned_cols=33  Identities=27%  Similarity=0.375  Sum_probs=31.4

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      .+||||||||+||++||.+|++.|.+   |+|||+.
T Consensus        18 ~~DVvVVG~G~AGl~AAl~aa~~G~~---V~vlEK~   50 (621)
T 2h88_A           18 EFDAVVVGAGGAGLRAAFGLSEAGFN---TACVTKL   50 (621)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESS
T ss_pred             cCCEEEECccHHHHHHHHHHHHCCCc---EEEEecc
Confidence            57999999999999999999999987   9999998

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.34  E-value=6.7e-07  Score=86.81  Aligned_cols=99  Identities=14%  Similarity=0.175  Sum_probs=73.3

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      ..+++|||||+.|+.+|..|++.|.+   |+++++.......                  +.    ......+.+.+++.
T Consensus       169 ~~~vvViGgG~~g~e~A~~l~~~g~~---Vtlv~~~~~~l~~------------------~~----~~~~~~l~~~l~~~  223 (464)
T 2eq6_A          169 PKRLLVIGGGAVGLELGQVYRRLGAE---VTLIEYMPEILPQ------------------GD----PETAALLRRALEKE  223 (464)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSSTT------------------SC----HHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCe---EEEEEcCCccccc------------------cC----HHHHHHHHHHHHhc
Confidence            36899999999999999999999876   9999988111100                  00    00012345677889


Q ss_pred             CcEEEeCceEEEEECCCC--EEEeC-C--Cc--EEecceEEEccCCCcccc
Q 013952           85 GIELILSTEIVRADIASK--TLLSA-T--GL--IFKYQILVIATGSTVLRL  128 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~--~v~~~-~--~~--~~~~d~lvlAtG~~~~~~  128 (433)
                      |++++.++.+..++.+++  .+.+. +  |+  ++.+|.+++|+|.+|...
T Consensus       224 gV~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~~~  274 (464)
T 2eq6_A          224 GIRVRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRTE  274 (464)
T ss_dssp             TCEEECSEEEEEEEEETTEEEEEEEETTCCSCEEEEESEEEECSCEEESCT
T ss_pred             CCEEEcCCEEEEEEEeCCEEEEEEeecCCCceeEEEcCEEEECCCcccCCC
Confidence            999999999999986554  34544 5  66  899999999999988654

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.33  E-value=2.3e-06  Score=81.81  Aligned_cols=99  Identities=15%  Similarity=0.178  Sum_probs=75.7

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      ..+++|||+|+.|+.+|..|++.|.+   |+++++...+..+.              .+       ......+.+.+++.
T Consensus       152 ~~~vvViGgG~~g~e~A~~l~~~g~~---Vtvv~~~~~~l~~~--------------~~-------~~~~~~l~~~l~~~  207 (415)
T 3lxd_A          152 AKNAVVIGGGYIGLEAAAVLTKFGVN---VTLLEALPRVLARV--------------AG-------EALSEFYQAEHRAH  207 (415)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSSTTTTT--------------SC-------HHHHHHHHHHHHHT
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCe---EEEEecCCchhhhh--------------cC-------HHHHHHHHHHHHhC
Confidence            46899999999999999999999876   99999882211100              00       00012345667789


Q ss_pred             CcEEEeCceEEEEECCCC---EEEeCCCcEEecceEEEccCCCccc
Q 013952           85 GIELILSTEIVRADIASK---TLLSATGLIFKYQILVIATGSTVLR  127 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~---~v~~~~~~~~~~d~lvlAtG~~~~~  127 (433)
                      |++++.++.+..+..++.   .|.+.+++++.+|.+|+|+|..|..
T Consensus       208 GV~i~~~~~v~~i~~~~~~v~~v~l~dG~~i~aD~Vv~a~G~~p~~  253 (415)
T 3lxd_A          208 GVDLRTGAAMDCIEGDGTKVTGVRMQDGSVIPADIVIVGIGIVPCV  253 (415)
T ss_dssp             TCEEEETCCEEEEEESSSBEEEEEESSSCEEECSEEEECSCCEESC
T ss_pred             CCEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECCCCccCh
Confidence            999999999999987543   4778899999999999999998864

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.33  E-value=7.3e-07  Score=86.49  Aligned_cols=98  Identities=17%  Similarity=0.178  Sum_probs=74.6

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      ..+++|||||+.|+.+|..|++.|.+   |+++++...+..  .+.         .           .....+.+.+++.
T Consensus       166 ~~~vvVvGgG~~g~e~A~~l~~~G~~---Vtlv~~~~~~l~--~~~---------~-----------~~~~~l~~~l~~~  220 (463)
T 2r9z_A          166 PKRVAIIGAGYIGIELAGLLRSFGSE---VTVVALEDRLLF--QFD---------P-----------LLSATLAENMHAQ  220 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSST--TSC---------H-----------HHHHHHHHHHHHT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCE---EEEEEcCCcccc--ccC---------H-----------HHHHHHHHHHHHC
Confidence            36899999999999999999999876   999998711110  000         0           0012345667889


Q ss_pred             CcEEEeCceEEEEECCC--CEEEeCCCc-EEecceEEEccCCCccc
Q 013952           85 GIELILSTEIVRADIAS--KTLLSATGL-IFKYQILVIATGSTVLR  127 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~--~~v~~~~~~-~~~~d~lvlAtG~~~~~  127 (433)
                      |++++.++.+..++.++  ..+.+.+|+ ++.+|.+++|+|.+|..
T Consensus       221 gv~i~~~~~v~~i~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~  266 (463)
T 2r9z_A          221 GIETHLEFAVAALERDAQGTTLVAQDGTRLEGFDSVIWAVGRAPNT  266 (463)
T ss_dssp             TCEEESSCCEEEEEEETTEEEEEETTCCEEEEESEEEECSCEEESC
T ss_pred             CCEEEeCCEEEEEEEeCCeEEEEEeCCcEEEEcCEEEECCCCCcCC
Confidence            99999999999997643  357778888 89999999999998865

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.33  E-value=2.7e-06  Score=77.83  Aligned_cols=98  Identities=13%  Similarity=0.108  Sum_probs=75.0

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc--------cC--------CC----CCCHHHHHHHHHHHHhcCcEEEc
Q 013952          164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPW--------CM--------PR----LFTADIAAFYEGYYANKGIKIIK  223 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~--------~~--------~~----~~~~~~~~~l~~~l~~~GV~v~~  223 (433)
                      .|+|||+|+.|+.+|..+++.|.+|+++++...        +.        +.    ...+++.+.+.+.+++.++++..
T Consensus         6 DvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~gg~~~~G~~~~~~~i~~~~g~~~~i~~~~l~~~~~~~~~~~~~~~~~   85 (314)
T 4a5l_A            6 DVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMAGGVAAGGQLTTTTIIENFPGFPNGIDGNELMMNMRTQSEKYGTTIIT   85 (314)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCCEEECCSSGGGCCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEEEC
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcccCCCcCChHHhhhccCCcccCCHHHHHHHHHHHHhhcCcEEEE
Confidence            689999999999999999999999999986531        00        01    11257788888889999999876


Q ss_pred             CCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccCh
Q 013952          224 GTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI  264 (433)
Q Consensus       224 ~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~  264 (433)
                      .. +.....  +.....+.+.++.++.+|.+|+|||.+|..
T Consensus        86 ~~-v~~~~~--~~~~~~~~~~~~~~~~~~~liiATG~~~~~  123 (314)
T 4a5l_A           86 ET-IDHVDF--STQPFKLFTEEGKEVLTKSVIIATGATAKR  123 (314)
T ss_dssp             CC-EEEEEC--SSSSEEEEETTCCEEEEEEEEECCCEEECC
T ss_pred             eE-EEEeec--CCCceEEEECCCeEEEEeEEEEcccccccc
Confidence            64 555554  333355677888899999999999987754

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=98.32  E-value=1.7e-06  Score=83.11  Aligned_cols=96  Identities=14%  Similarity=0.185  Sum_probs=75.2

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      ..+++|||||+.|+-.|..+++.|.+   |+++++......           ....           .....+.+.+++.
T Consensus       147 ~~~vvViGgG~ig~E~A~~l~~~g~~---Vtlv~~~~~ll~-----------~~d~-----------~~~~~~~~~l~~~  201 (437)
T 4eqs_A          147 VDKVLVVGAGYVSLEVLENLYERGLH---PTLIHRSDKINK-----------LMDA-----------DMNQPILDELDKR  201 (437)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCE---EEEEESSSCCST-----------TSCG-----------GGGHHHHHHHHHT
T ss_pred             CcEEEEECCccchhhhHHHHHhcCCc---ceeeeeeccccc-----------cccc-----------hhHHHHHHHhhcc
Confidence            35899999999999999999999977   999998811100           0000           0123456778889


Q ss_pred             CcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccc
Q 013952           85 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLR  127 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~  127 (433)
                      |++++.++.+..++  ...+.+++++++++|.+++|+|.+|..
T Consensus       202 gV~i~~~~~v~~~~--~~~v~~~~g~~~~~D~vl~a~G~~Pn~  242 (437)
T 4eqs_A          202 EIPYRLNEEINAIN--GNEITFKSGKVEHYDMIIEGVGTHPNS  242 (437)
T ss_dssp             TCCEEESCCEEEEE--TTEEEETTSCEEECSEEEECCCEEESC
T ss_pred             ceEEEeccEEEEec--CCeeeecCCeEEeeeeEEEEeceecCc
Confidence            99999999998876  457889999999999999999988864

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=98.32  E-value=5.8e-06  Score=75.27  Aligned_cols=167  Identities=16%  Similarity=0.138  Sum_probs=104.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhC--CCeEEEEccCCccCCCC-------------------------------------C
Q 013952          162 NGKAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPWCMPRL-------------------------------------F  202 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~--g~~V~li~~~~~~~~~~-------------------------------------~  202 (433)
                      ...|+|||+|+.|+.+|..|++.  |.+|+++++.+......                                     .
T Consensus        65 ~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~g~~~~~~~  144 (326)
T 2gjc_A           65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGDYVVVKH  144 (326)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCGGGCCCEEEETTTHHHHHHTTCCCEECSSEEEESC
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccccccccccCcccchhhhhhHHHHHHHhhCcccccCCCeEEEcc
Confidence            44899999999999999999998  99999999854332000                                     1


Q ss_pred             CHHHHHHHHHHHHh-cCcEEEcCCeEEEEEecC--C-C--cEEEEEeC--------------CCcEEEC-----------
Q 013952          203 TADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNA--D-G--EVKEVKLK--------------DGRTLEA-----------  251 (433)
Q Consensus       203 ~~~~~~~l~~~l~~-~GV~v~~~~~v~~i~~~~--~-g--~~~~v~~~--------------~g~~i~~-----------  251 (433)
                      ..++...+.+.+.+ .||+++.++++.++..++  + +  ++.+|.+.              ++..+.|           
T Consensus       145 ~~~~~~~L~~~a~~~~GV~i~~~~~V~~Ll~~~~~~~g~~rV~GVvv~~~~v~~~g~~~~~~d~~~I~A~G~~~~~~~~~  224 (326)
T 2gjc_A          145 AALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCMDPNVIELAGYKNDGTRDL  224 (326)
T ss_dssp             HHHHHHHHHHHHHTSTTEEEETTEEEEEEEECCCC-----CEEEEEEEEHHHHTC---CCCCCCEEEEESCCCSSSCCCS
T ss_pred             hHHHHHHHHHHHHHhcCcEEEecceeeeeeecccccCCCcEEEEEEecceeecccccceeccCceEEEEeeccccccccc
Confidence            23445566666666 499999999999998743  3 4  77777652              3357999           


Q ss_pred             ----CEEEEcccCccCh-hhhhccc---ccC---CCc----------EEeCCCCC-CCCCCeEEcCccccccccccCccc
Q 013952          252 ----DIVVVGVGGRPLI-SLFKGQV---AEN---KGG----------IETDDFFK-TSADDVYAVGDVATFPMKLYREMR  309 (433)
Q Consensus       252 ----d~vi~a~G~~p~~-~~~~~~~---~~~---~g~----------i~vd~~~~-t~~~~vfa~Gd~~~~~~~~~~~~~  309 (433)
                          +.||.|+|..... .++...+   ...   .|-          .+|+..-. +-+|++|++|-.+..-.   |.++
T Consensus       225 ~~~~~~VV~ATG~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~r  301 (326)
T 2gjc_A          225 SQKHGVILSTTGHDGPFGAFCAKRIVDIDQNQKLGGMKGLDMNHAEHDVVIHSGAYAGVDNMYFAGMEVAELD---GLNR  301 (326)
T ss_dssp             STTCCEEEECCCCC--CCSHHHHHHHHHHSSCCCCCCCCBCHHHHHHHHHHHCEECTTSTTEEECTHHHHHHH---TCCB
T ss_pred             cccCCEEEECcCCCchHHHHHHhhccccccccccCceeccccccchhheeecCCCccccCCEEECChHHHHhc---CCCC
Confidence                9999999966433 2332111   110   010          11111112 15899999998774321   1111


Q ss_pred             ccccHHHHHHHHHHHHHHHhcc
Q 013952          310 RVEHVDHARKSAEQAVKTIMAT  331 (433)
Q Consensus       310 ~~~~~~~A~~~g~~aa~~i~~~  331 (433)
                      --+....-...|+.||+.|+..
T Consensus       302 ~g~~fg~m~~sg~~~a~~~~~~  323 (326)
T 2gjc_A          302 MGPTFGAMALSGVHAAEQILKH  323 (326)
T ss_dssp             CCSCCHHHHHHHHHHHHHHHHH
T ss_pred             CChhhhhhhhhhHHHHHHHHHH
Confidence            1123333446788898888754

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.32  E-value=1.3e-06  Score=84.32  Aligned_cols=100  Identities=20%  Similarity=0.355  Sum_probs=71.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhC--CCeEEEEccCCccCC------CC-----CCHHHHHHHHHHH-HhcCcEEEcCCeE
Q 013952          162 NGKAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPWCMP------RL-----FTADIAAFYEGYY-ANKGIKIIKGTVA  227 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~--g~~V~li~~~~~~~~------~~-----~~~~~~~~l~~~l-~~~GV~v~~~~~v  227 (433)
                      .++++|||+|+.|+.+|..|++.  +.+|+++++.+.+..      ..     ...++.....+.+ ++.||++++++++
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~v   82 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPCGIPYVVEGLSTPDKLMYYPPEVFIKKRGIDLHLNAEV   82 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC------------------------CTHHHHTTCEEETTCEE
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCcCCccccCCCCCHHHhhhcCHHHHHHhcCcEEEecCEE
Confidence            46899999999999999999998  789999998764311      00     0112222222333 6889999999999


Q ss_pred             EEEEecCCCcEEEEEeCCC-cEEECCEEEEcccCccChh
Q 013952          228 VGFTTNADGEVKEVKLKDG-RTLEADIVVVGVGGRPLIS  265 (433)
Q Consensus       228 ~~i~~~~~g~~~~v~~~~g-~~i~~d~vi~a~G~~p~~~  265 (433)
                      ..++.  +.  ..+.+.++ .++.+|.+|+|||.+|...
T Consensus        83 ~~i~~--~~--~~v~~~~g~~~~~~d~lviAtG~~p~~p  117 (449)
T 3kd9_A           83 IEVDT--GY--VRVRENGGEKSYEWDYLVFANGASPQVP  117 (449)
T ss_dssp             EEECS--SE--EEEECSSSEEEEECSEEEECCCEEECCC
T ss_pred             EEEec--CC--CEEEECCceEEEEcCEEEECCCCCCCCC
Confidence            99864  33  45667777 4799999999999887643

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=98.31  E-value=7.1e-07  Score=90.13  Aligned_cols=34  Identities=18%  Similarity=0.328  Sum_probs=31.8

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHH-cCCCCCcEEEEcCC
Q 013952            4 KSFKYVILGGGVSAGYAAREFAK-QGVKPGELAIISKE   40 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~-~g~~~~~V~lie~~   40 (433)
                      ..+||+|||||++||++|..|++ .|.+   |+|||+.
T Consensus        31 ~~~dVlIVGaGpaGL~~A~~La~~~G~~---V~viEr~   65 (639)
T 2dkh_A           31 SQVDVLIVGCGPAGLTLAAQLAAFPDIR---TCIVEQK   65 (639)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHTTCTTSC---EEEECSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHhCCCC---EEEEeCC
Confidence            35799999999999999999999 8987   9999998

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.31  E-value=1.5e-06  Score=84.06  Aligned_cols=101  Identities=12%  Similarity=0.232  Sum_probs=74.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhC--CCeEEEEccCCccC--CC----CCC------HHHHHHHHHHHHhcCcEEEcCCeEE
Q 013952          163 GKAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPWCM--PR----LFT------ADIAAFYEGYYANKGIKIIKGTVAV  228 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~--g~~V~li~~~~~~~--~~----~~~------~~~~~~l~~~l~~~GV~v~~~~~v~  228 (433)
                      ++++|||+|+.|+.+|..|++.  |.+|+++++.+.+.  +.    ...      .++.....+.+++.|++++.+++|.
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~V~   82 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAYFNHTINELHEARYITEEELRRQKIQLLLNREVV   82 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC----------------CCCCHHHHHHTTEEEECSCEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCccchhhhcCCCCCHHHhhcCCHHHHHHCCCEEEECCEEE
Confidence            5899999999999999999998  89999999876532  11    001      1111124566788999999999999


Q ss_pred             EEEecCCCcEEEEE-eCCCcEEECCEEEEcccCccChh
Q 013952          229 GFTTNADGEVKEVK-LKDGRTLEADIVVVGVGGRPLIS  265 (433)
Q Consensus       229 ~i~~~~~g~~~~v~-~~~g~~i~~d~vi~a~G~~p~~~  265 (433)
                      +++.  +.+...+. ..++.++.+|.+|+|||.+|...
T Consensus        83 ~id~--~~~~v~v~~~~~~~~~~~d~lviAtG~~p~~p  118 (452)
T 3oc4_A           83 AMDV--ENQLIAWTRKEEQQWYSYDKLILATGASQFST  118 (452)
T ss_dssp             EEET--TTTEEEEEETTEEEEEECSEEEECCCCCBCCC
T ss_pred             EEEC--CCCEEEEEecCceEEEEcCEEEECCCcccCCC
Confidence            9986  44444443 23456799999999999988653

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=98.30  E-value=1.2e-06  Score=86.96  Aligned_cols=33  Identities=24%  Similarity=0.337  Sum_probs=31.5

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      .+||+|||||++|+++|..|++.|.+   |+|+|+.
T Consensus        26 ~~dVlIVGaGpaGl~~A~~La~~G~~---V~vlEr~   58 (549)
T 2r0c_A           26 ETDVLILGGGPVGMALALDLAHRQVG---HLVVEQT   58 (549)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCC---EEEEeCC
Confidence            57999999999999999999999987   9999998

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=98.30  E-value=3.9e-06  Score=79.70  Aligned_cols=101  Identities=20%  Similarity=0.333  Sum_probs=74.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCC-----CCCHHHHH----------------------------
Q 013952          162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR-----LFTADIAA----------------------------  208 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~-----~~~~~~~~----------------------------  208 (433)
                      ..+|+|||+|+.|+.+|..|++.|.+|+++++.+.....     .+.+...+                            
T Consensus         5 ~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~   84 (397)
T 2vou_A            5 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTGE   84 (397)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTTCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccccccccChhHHHHHHHcCCccccccccccceEEEecCCCC
Confidence            468999999999999999999999999999987553111     01222111                            


Q ss_pred             ---------------HHHHHHHh--cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccCh
Q 013952          209 ---------------FYEGYYAN--KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI  264 (433)
Q Consensus       209 ---------------~l~~~l~~--~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~  264 (433)
                                     .+.+.|.+  .|++++++++|+++..++++  ..+++.+|+++.+|.||.|.|.....
T Consensus        85 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~--v~v~~~~g~~~~ad~vV~AdG~~S~v  155 (397)
T 2vou_A           85 RVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSET--VQMRFSDGTKAEANWVIGADGGASVV  155 (397)
T ss_dssp             EEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSC--EEEEETTSCEEEESEEEECCCTTCHH
T ss_pred             ccccccCcccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCE--EEEEECCCCEEECCEEEECCCcchhH
Confidence                           12222222  38999999999999874333  56888899899999999999987654

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.30  E-value=7.4e-07  Score=86.31  Aligned_cols=99  Identities=16%  Similarity=0.229  Sum_probs=72.5

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      ..+++|||||+.|+.+|..|++.|.+   |+++++.....                  +.+.    ......+.+.+++.
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~~---Vtlv~~~~~~l------------------~~~~----~~~~~~l~~~l~~~  224 (455)
T 1ebd_A          170 PKSLVVIGGGYIGIELGTAYANFGTK---VTILEGAGEIL------------------SGFE----KQMAAIIKKRLKKK  224 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSSSS------------------TTSC----HHHHHHHHHHHHHT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCc---EEEEEcCCccc------------------cccC----HHHHHHHHHHHHHC
Confidence            46899999999999999999999876   99999871111                  0000    00012345667889


Q ss_pred             CcEEEeCceEEEEECCCCE--EEeC---CCcEEecceEEEccCCCcccc
Q 013952           85 GIELILSTEIVRADIASKT--LLSA---TGLIFKYQILVIATGSTVLRL  128 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~~--v~~~---~~~~~~~d~lvlAtG~~~~~~  128 (433)
                      |++++.++.+..++.++..  +.+.   +++++++|.+++|+|.+|...
T Consensus       225 gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~  273 (455)
T 1ebd_A          225 GVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVTVGRRPNTD  273 (455)
T ss_dssp             TCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCEEESCS
T ss_pred             CCEEEeCCEEEEEEEeCCeEEEEEEeCCceeEEEcCEEEECcCCCcccC
Confidence            9999999999999865543  3433   446799999999999988653

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=98.28  E-value=6.2e-06  Score=81.82  Aligned_cols=99  Identities=15%  Similarity=0.065  Sum_probs=77.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc-cC-----------------------CC------------------
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW-CM-----------------------PR------------------  200 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~-~~-----------------------~~------------------  200 (433)
                      -.|+|||+|..|+++|..+++.|.+|.++++.+. +.                       ..                  
T Consensus        29 yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi~f~~l~~  108 (651)
T 3ces_A           29 FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRILNA  108 (651)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEEEEEEST
T ss_pred             CCEEEECChHHHHHHHHHHHhCCCCEEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhhhcccchhhhhc
Confidence            3799999999999999999999999999987531 10                       00                  


Q ss_pred             -----------CCC-HHHHHHHHHHHHh-cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccC
Q 013952          201 -----------LFT-ADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL  263 (433)
Q Consensus       201 -----------~~~-~~~~~~l~~~l~~-~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~  263 (433)
                                 ..+ ..+.+.+.+.+++ .|++++ +..|..+.. +++++..|.+.+|..+.||.||+|+|..++
T Consensus       109 ~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I~-~~~V~~L~~-e~g~V~GV~t~dG~~I~Ad~VVLATGt~s~  182 (651)
T 3ces_A          109 SKGPAVRATRAQADRVLYRQAVRTALENQPNLMIF-QQAVEDLIV-ENDRVVGAVTQMGLKFRAKAVVLTVGTFLD  182 (651)
T ss_dssp             TSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEE-SSSBEEEEEETTSEEEEEEEEEECCSTTTC
T ss_pred             ccCcccccchhhCCHHHHHHHHHHHHHhCCCCEEE-EEEEEEEEe-cCCEEEEEEECCCCEEECCEEEEcCCCCcc
Confidence                       001 2355667777877 699995 678999976 466777899989988999999999997653

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=98.28  E-value=6.4e-06  Score=81.44  Aligned_cols=100  Identities=19%  Similarity=0.136  Sum_probs=77.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc-cC-----------------------CCC-----------------
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW-CM-----------------------PRL-----------------  201 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~-~~-----------------------~~~-----------------  201 (433)
                      -.|+|||+|..|+++|..+++.|.+|.++++.+. +.                       ...                 
T Consensus        28 yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~~~d~~gi~f~~l~~  107 (637)
T 2zxi_A           28 FDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQFKMLNT  107 (637)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHHHHHHHEEEEEEEST
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHHHhhhcccceeeccc
Confidence            4799999999999999999999999999987531 10                       000                 


Q ss_pred             ------------CC-HHHHHHHHHHHHh-cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccCh
Q 013952          202 ------------FT-ADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI  264 (433)
Q Consensus       202 ------------~~-~~~~~~l~~~l~~-~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~  264 (433)
                                  .+ ..+.+.+.+.+++ .||+++ +..|+++.. +++++..|.+.+|..+.||.||+|+|..++.
T Consensus       108 ~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI~-~~~Vt~L~~-e~g~V~GV~t~dG~~i~AdaVVLATG~~s~~  182 (637)
T 2zxi_A          108 RKGKAVQSPRAQADKKRYREYMKKVCENQENLYIK-QEEVVDIIV-KNNQVVGVRTNLGVEYKTKAVVVTTGTFLNG  182 (637)
T ss_dssp             TSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ESCEEEEEE-SSSBEEEEEETTSCEEECSEEEECCTTCBTC
T ss_pred             ccCccccchhhhCCHHHHHHHHHHHHHhCCCCEEE-EeEEEEEEe-cCCEEEEEEECCCcEEEeCEEEEccCCCccC
Confidence                        00 2345666777777 599995 678999876 4677778999999999999999999976543

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=98.28  E-value=3.2e-06  Score=76.99  Aligned_cols=33  Identities=33%  Similarity=0.384  Sum_probs=30.7

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHc--CCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQ--GVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~--g~~~~~V~lie~~   40 (433)
                      .+||+|||||++|+++|..|++.  |++   |+|+|+.
T Consensus        65 ~~dv~IiG~G~aGl~aA~~la~~~~g~~---V~v~e~~   99 (326)
T 2gjc_A           65 VSDVIIVGAGSSGLSAAYVIAKNRPDLK---VCIIESS   99 (326)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSC---EEEECSS
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCe---EEEEecC
Confidence            46999999999999999999998  776   9999998

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.27  E-value=3e-06  Score=77.47  Aligned_cols=101  Identities=15%  Similarity=0.054  Sum_probs=74.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEE-EccCCc---c--------CCC----CCCHHHHHHHHHHHHhcCcEEEcCC
Q 013952          162 NGKAVVVGGGYIGLELSAALKINNIDVSM-VYPEPW---C--------MPR----LFTADIAAFYEGYYANKGIKIIKGT  225 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~l-i~~~~~---~--------~~~----~~~~~~~~~l~~~l~~~GV~v~~~~  225 (433)
                      ..+|+|||+|+.|+.+|..|++.|.+|++ +++...   +        .+.    ....++...+.+.+++.|++++.+ 
T Consensus         4 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-   82 (315)
T 3r9u_A            4 MLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEKGMPGGQITSSSEIENYPGVAQVMDGISFMAPWSEQCMRFGLKHEMV-   82 (315)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHTCSCEEEECSSSTTGGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHTTTCCEEECC-
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCCCCceeeeeceeccCCCCCCCCCHHHHHHHHHHHHHHcCcEEEEE-
Confidence            45899999999999999999999999999 886310   0        111    012578888899999999999998 


Q ss_pred             eEEEEEecCCCcEEEE-EeCCCcEEECCEEEEcccCccChh
Q 013952          226 VAVGFTTNADGEVKEV-KLKDGRTLEADIVVVGVGGRPLIS  265 (433)
Q Consensus       226 ~v~~i~~~~~g~~~~v-~~~~g~~i~~d~vi~a~G~~p~~~  265 (433)
                      ++.++ .+++.....+ ...++ ++.+|.+|+|+|.+|+..
T Consensus        83 ~v~~i-~~~~~~~~~v~~~~~~-~~~~d~lvlAtG~~~~~~  121 (315)
T 3r9u_A           83 GVEQI-LKNSDGSFTIKLEGGK-TELAKAVIVCTGSAPKKA  121 (315)
T ss_dssp             CEEEE-EECTTSCEEEEETTSC-EEEEEEEEECCCEEECCC
T ss_pred             EEEEE-ecCCCCcEEEEEecCC-EEEeCEEEEeeCCCCCCC
Confidence            88888 5221122443 22334 899999999999877643

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.25  E-value=2.5e-06  Score=85.41  Aligned_cols=103  Identities=17%  Similarity=0.199  Sum_probs=76.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhC--CCeEEEEccCCccC-----------CCCCC--HHHHHHHHHHHHhcCcEEEcCC
Q 013952          161 KNGKAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPWCM-----------PRLFT--ADIAAFYEGYYANKGIKIIKGT  225 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~--g~~V~li~~~~~~~-----------~~~~~--~~~~~~l~~~l~~~GV~v~~~~  225 (433)
                      ..++|+|||+|+.|+.+|..|++.  |.+|+++++.+.+.           ....+  ..+...+....++.|+++++++
T Consensus        35 ~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~~~~~~lp~~~~g~~~~~~~~~~~~~~~~~~~~gi~v~~~~  114 (588)
T 3ics_A           35 GSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISFANCGLPYYIGGVITERQKLLVQTVERMSKRFNLDIRVLS  114 (588)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTTSSCCGGGGBSSCHHHHHHHTTCEEECSE
T ss_pred             cCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCccccCCCCchhhcCcCCChHHhhccCHHHHHHhcCcEEEECC
Confidence            457999999999999999999998  89999999887631           00001  1123345566678899999999


Q ss_pred             eEEEEEecCCCcEEEEEe-CCCc--EEECCEEEEcccCccChh
Q 013952          226 VAVGFTTNADGEVKEVKL-KDGR--TLEADIVVVGVGGRPLIS  265 (433)
Q Consensus       226 ~v~~i~~~~~g~~~~v~~-~~g~--~i~~d~vi~a~G~~p~~~  265 (433)
                      +|.+++.  +++...+.. .+|+  .+.+|.+|+|||.+|...
T Consensus       115 ~V~~id~--~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~~p  155 (588)
T 3ics_A          115 EVVKINK--EEKTITIKNVTTNETYNEAYDVLILSPGAKPIVP  155 (588)
T ss_dssp             EEEEEET--TTTEEEEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred             EEEEEEC--CCCEEEEeecCCCCEEEEeCCEEEECCCCCCCCC
Confidence            9999986  444444443 4565  789999999999877643

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.24  E-value=2.2e-06  Score=84.02  Aligned_cols=98  Identities=16%  Similarity=0.182  Sum_probs=74.6

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      ..+++|||||+.|+-.|..|++.|.+   |+++++......  .+.         .           .....+.+.+++.
T Consensus       176 ~~~vvViGgG~ig~E~A~~l~~~g~~---Vtlv~~~~~~l~--~~d---------~-----------~~~~~l~~~l~~~  230 (500)
T 1onf_A          176 SKKIGIVGSGYIAVELINVIKRLGID---SYIFARGNRILR--KFD---------E-----------SVINVLENDMKKN  230 (500)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCE---EEEECSSSSSCT--TSC---------H-----------HHHHHHHHHHHHT
T ss_pred             CCeEEEECChHHHHHHHHHHHHcCCe---EEEEecCCccCc--ccc---------h-----------hhHHHHHHHHHhC
Confidence            35899999999999999999998876   999998711110  000         0           0012346677889


Q ss_pred             CcEEEeCceEEEEECCC---CEEEeCCCcE-EecceEEEccCCCccc
Q 013952           85 GIELILSTEIVRADIAS---KTLLSATGLI-FKYQILVIATGSTVLR  127 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~---~~v~~~~~~~-~~~d~lvlAtG~~~~~  127 (433)
                      |++++.++.+..++.++   ..+.+.+|++ +.+|.+++|+|.+|..
T Consensus       231 gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~D~vi~a~G~~p~~  277 (500)
T 1onf_A          231 NINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGRSPDT  277 (500)
T ss_dssp             TCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECCCBCCTT
T ss_pred             CCEEEECCEEEEEEEcCCceEEEEECCCcEEEECCEEEECCCCCcCC
Confidence            99999999999998643   2577778887 9999999999998875

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=98.24  E-value=5.7e-06  Score=78.43  Aligned_cols=101  Identities=16%  Similarity=0.153  Sum_probs=76.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc------CCCC-----------------------------------
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC------MPRL-----------------------------------  201 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~------~~~~-----------------------------------  201 (433)
                      .+|+|||+|+.|+.+|..|++.|.+|+++++.+..      ....                                   
T Consensus         3 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~   82 (394)
T 1k0i_A            3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAGQ   82 (394)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEETTE
T ss_pred             ccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHHHHhcCCccceEEEEECCc
Confidence            37999999999999999999999999999976531      0000                                   


Q ss_pred             ------------------CCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe-CCCc--EEECCEEEEcccC
Q 013952          202 ------------------FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL-KDGR--TLEADIVVVGVGG  260 (433)
Q Consensus       202 ------------------~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~-~~g~--~i~~d~vi~a~G~  260 (433)
                                        ....+.+.+.+.+.+.|++++++++|+++..++++. ..|++ .+|+  ++.+|.||.|.|.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~-~~v~~~~~g~~~~~~a~~vV~AdG~  161 (394)
T 1k0i_A           83 RRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGER-PYVTFERDGERLRLDCDYIAGCDGF  161 (394)
T ss_dssp             EEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSS-CEEEEEETTEEEEEECSEEEECCCT
T ss_pred             eEEeccccccCCCceEEechHHHHHHHHHHHHhcCCeEEeceeEEEEEEecCCc-eEEEEecCCcEEEEEeCEEEECCCC
Confidence                              013455567777777899999999999998632222 35666 6776  7999999999998


Q ss_pred             ccCh
Q 013952          261 RPLI  264 (433)
Q Consensus       261 ~p~~  264 (433)
                      ....
T Consensus       162 ~S~v  165 (394)
T 1k0i_A          162 HGIS  165 (394)
T ss_dssp             TCST
T ss_pred             CcHH
Confidence            7654

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=98.24  E-value=8.5e-07  Score=83.17  Aligned_cols=37  Identities=27%  Similarity=0.448  Sum_probs=34.6

Q ss_pred             CCCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ||+.++||+|||||++|+++|++|+++|.+   |+|+|+.
T Consensus         2 ~m~~~~dVvVIG~Gi~Gls~A~~La~~G~~---V~vle~~   38 (363)
T 1c0p_A            2 MMHSQKRVVVLGSGVIGLSSALILARKGYS---VHILARD   38 (363)
T ss_dssp             CCCCSCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESS
T ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHhCCCE---EEEEecc
Confidence            777789999999999999999999999987   9999998

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.24  E-value=1.6e-06  Score=84.45  Aligned_cols=98  Identities=15%  Similarity=0.170  Sum_probs=74.3

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      ..+++|||||+.|+-.|..|++.|.+   |+++++......  .+.         .           .....+.+.+++.
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~g~~---Vtlv~~~~~~l~--~~d---------~-----------~~~~~l~~~l~~~  239 (479)
T 2hqm_A          185 PKKVVVVGAGYIGIELAGVFHGLGSE---THLVIRGETVLR--KFD---------E-----------CIQNTITDHYVKE  239 (479)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCE---EEEECSSSSSCT--TSC---------H-----------HHHHHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCc---eEEEEeCCcccc--ccC---------H-----------HHHHHHHHHHHhC
Confidence            36899999999999999999999876   999998811110  000         0           0012345667788


Q ss_pred             CcEEEeCceEEEEECCC----CEEEeCCC-cEEecceEEEccCCCccc
Q 013952           85 GIELILSTEIVRADIAS----KTLLSATG-LIFKYQILVIATGSTVLR  127 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~----~~v~~~~~-~~~~~d~lvlAtG~~~~~  127 (433)
                      |++++.++.+..+..++    ..+.+.+| +++.+|.+|+|+|.+|..
T Consensus       240 Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~  287 (479)
T 2hqm_A          240 GINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHL  287 (479)
T ss_dssp             TCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCEEECC
T ss_pred             CeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCCCCcc
Confidence            99999999999997642    25777888 789999999999988865

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=98.23  E-value=1e-05  Score=80.11  Aligned_cols=98  Identities=17%  Similarity=0.174  Sum_probs=76.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC--------CC------------CCC----------------HHH
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM--------PR------------LFT----------------ADI  206 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~--------~~------------~~~----------------~~~  206 (433)
                      .+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.        +.            .+.                +++
T Consensus        17 ~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~~~~~~~i   96 (542)
T 1w4x_A           17 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPEI   96 (542)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHHH
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhccCcccccCCHHHH
Confidence            379999999999999999999999999998764320        00            011                345


Q ss_pred             HHHHHHHHHhcC--cEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013952          207 AAFYEGYYANKG--IKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG  260 (433)
Q Consensus       207 ~~~l~~~l~~~G--V~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~  260 (433)
                      .+.+....++.+  +.++++++|.++..++++....|++.+|+++.+|.||+|+|.
T Consensus        97 ~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~  152 (542)
T 1w4x_A           97 LRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQ  152 (542)
T ss_dssp             HHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCS
T ss_pred             HHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCC
Confidence            566666666665  679999999999875554556788889989999999999994

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=98.22  E-value=2.1e-06  Score=83.95  Aligned_cols=98  Identities=14%  Similarity=0.222  Sum_probs=74.8

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHc---CCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHH
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQ---GVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWY   81 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~---g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (433)
                      ..+++|||||+.|+-.|..|++.   |.+   |+++++......  .+.         .           .....+.+.+
T Consensus       191 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~---Vtlv~~~~~~l~--~~d---------~-----------~~~~~l~~~l  245 (495)
T 2wpf_A          191 PRRVLTVGGGFISVEFAGIFNAYKPPGGK---VTLCYRNNLILR--GFD---------E-----------TIREEVTKQL  245 (495)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCE---EEEEESSSSSCT--TSC---------H-----------HHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCCCCe---EEEEEcCCcccc--ccC---------H-----------HHHHHHHHHH
Confidence            36899999999999999999998   876   999998821110  000         0           0012346677


Q ss_pred             HhCCcEEEeCceEEEEECCC---CEEEeCCCcEEecceEEEccCCCccc
Q 013952           82 KEKGIELILSTEIVRADIAS---KTLLSATGLIFKYQILVIATGSTVLR  127 (433)
Q Consensus        82 ~~~~v~~~~~~~v~~i~~~~---~~v~~~~~~~~~~d~lvlAtG~~~~~  127 (433)
                      ++.|++++.++.+..++.++   ..|.+.+|+++++|.+|+|+|.+|..
T Consensus       246 ~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~  294 (495)
T 2wpf_A          246 TANGIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGRIPRT  294 (495)
T ss_dssp             HHTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEECC
T ss_pred             HhCCCEEEeCCEEEEEEEcCCceEEEEECCCcEEEcCEEEECCCCcccc
Confidence            88999999999999998653   25777888899999999999998865

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=98.21  E-value=2.3e-06  Score=83.63  Aligned_cols=98  Identities=15%  Similarity=0.210  Sum_probs=74.8

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHc---CCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHH
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQ---GVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWY   81 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~---g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (433)
                      ..+++|||||+.|+-+|..|++.   |.+   |+++++......  .+                .    ......+.+.+
T Consensus       187 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~---Vtlv~~~~~~l~--~~----------------d----~~~~~~l~~~l  241 (490)
T 1fec_A          187 PKRALCVGGGYISIEFAGIFNAYKARGGQ---VDLAYRGDMILR--GF----------------D----SELRKQLTEQL  241 (490)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCE---EEEEESSSSSST--TS----------------C----HHHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhccCcCe---EEEEEcCCCccc--cc----------------C----HHHHHHHHHHH
Confidence            36899999999999999999998   776   999998821110  00                0    00013355677


Q ss_pred             HhCCcEEEeCceEEEEECCC---CEEEeCCCcEEecceEEEccCCCccc
Q 013952           82 KEKGIELILSTEIVRADIAS---KTLLSATGLIFKYQILVIATGSTVLR  127 (433)
Q Consensus        82 ~~~~v~~~~~~~v~~i~~~~---~~v~~~~~~~~~~d~lvlAtG~~~~~  127 (433)
                      ++.|++++.++.+..+..++   ..|.+.+|+++.+|.+|+|+|.+|..
T Consensus       242 ~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~  290 (490)
T 1fec_A          242 RANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPRS  290 (490)
T ss_dssp             HHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEESC
T ss_pred             HhCCCEEEeCCEEEEEEEcCCCEEEEEECCCcEEEcCEEEEccCCCcCc
Confidence            88999999999999998653   25777888889999999999998865

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.21  E-value=1.7e-06  Score=84.34  Aligned_cols=99  Identities=15%  Similarity=0.301  Sum_probs=73.0

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      ..+++|||||+.|+.+|..|++.|.+   |+++++......  .+.         .           .....+.+.+++.
T Consensus       183 ~~~vvViGgG~~g~e~A~~l~~~g~~---Vtlv~~~~~~l~--~~~---------~-----------~~~~~l~~~l~~~  237 (478)
T 1v59_A          183 PKRLTIIGGGIIGLEMGSVYSRLGSK---VTVVEFQPQIGA--SMD---------G-----------EVAKATQKFLKKQ  237 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSSS--SSC---------H-----------HHHHHHHHHHHHT
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCE---EEEEEeCCcccc--ccC---------H-----------HHHHHHHHHHHHC
Confidence            36899999999999999999999876   999998821110  000         0           0013345677889


Q ss_pred             CcEEEeCceEEEEEC--CCC--EEEeC-----CCcEEecceEEEccCCCcccc
Q 013952           85 GIELILSTEIVRADI--ASK--TLLSA-----TGLIFKYQILVIATGSTVLRL  128 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~--~~~--~v~~~-----~~~~~~~d~lvlAtG~~~~~~  128 (433)
                      |++++.++.+..++.  +++  .+.+.     +++++.+|.+|+|+|.+|...
T Consensus       238 gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~  290 (478)
T 1v59_A          238 GLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYIA  290 (478)
T ss_dssp             TCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCEEECCT
T ss_pred             CCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCCCcCCC
Confidence            999999999999986  444  34444     346799999999999988654

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.20  E-value=3.8e-06  Score=81.68  Aligned_cols=102  Identities=20%  Similarity=0.246  Sum_probs=64.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhC--CCeEEEEccCCccC------CCCCC------HHH-------HHHHHHHHHhcCcE
Q 013952          162 NGKAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPWCM------PRLFT------ADI-------AAFYEGYYANKGIK  220 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~--g~~V~li~~~~~~~------~~~~~------~~~-------~~~l~~~l~~~GV~  220 (433)
                      .++|+|||+|+.|+.+|..|++.  |.+|+++++.+.+.      +....      .++       ........++.|++
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gi~   82 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGGCGIPYYVSGEVSNIESLQATPYNVVRDPEFFRINKDVE   82 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC-------------------------------------------CE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcccccccccchhhcCCCCchHHhccccchhccCHHHHhhhcCcE
Confidence            36899999999999999999998  89999999887631      11111      111       22223333458999


Q ss_pred             EEcCCeEEEEEecCCCcEEEEEe-CCCc--EEECCEEEEcccCccChh
Q 013952          221 IIKGTVAVGFTTNADGEVKEVKL-KDGR--TLEADIVVVGVGGRPLIS  265 (433)
Q Consensus       221 v~~~~~v~~i~~~~~g~~~~v~~-~~g~--~i~~d~vi~a~G~~p~~~  265 (433)
                      ++.+++|.+++.  +++...+.. .+|+  .+.+|.+|+|+|.+|...
T Consensus        83 ~~~~~~V~~id~--~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p  128 (472)
T 3iwa_A           83 ALVETRAHAIDR--AAHTVEIENLRTGERRTLKYDKLVLALGSKANRP  128 (472)
T ss_dssp             EECSEEEEEEET--TTTEEEEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred             EEECCEEEEEEC--CCCEEEEeecCCCCEEEEECCEEEEeCCCCcCCC
Confidence            999999999986  444444443 3354  799999999999877643

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.20  E-value=3e-06  Score=82.27  Aligned_cols=102  Identities=17%  Similarity=0.188  Sum_probs=76.4

Q ss_pred             cEEEECCCHHHHHHHHHHHhCC-----CeEEEEccCCccC-------CC-------------------------------
Q 013952          164 KAVVVGGGYIGLELSAALKINN-----IDVSMVYPEPWCM-------PR-------------------------------  200 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g-----~~V~li~~~~~~~-------~~-------------------------------  200 (433)
                      .|+|||+|+.|+.+|..|++.|     .+|+++++.+.+.       +.                               
T Consensus        32 dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~l~~~~  111 (463)
T 3s5w_A           32 DLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHGNTLVSQSELQISFLKDLVSLRNPTSPYSFVNYLHKHD  111 (463)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSSGGGCCSSCBCSSCTTSSSSTTTCTTCTTSHHHHHHHTT
T ss_pred             CEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCcCCCCCCCCcCCcchhhccccccCCCCCCChhHhhhhcC
Confidence            7999999999999999999999     8999998776321       00                               


Q ss_pred             ----------C--CCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCC-CcE--EEEEeCCCc----EEECCEEEEcccCc
Q 013952          201 ----------L--FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD-GEV--KEVKLKDGR----TLEADIVVVGVGGR  261 (433)
Q Consensus       201 ----------~--~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~-g~~--~~v~~~~g~----~i~~d~vi~a~G~~  261 (433)
                                .  ...++.+.+....++.+++++++++|.+++..++ +..  ..|.+.+|+    ++.+|.||+|+|..
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d~lVlAtG~~  191 (463)
T 3s5w_A          112 RLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVSPGGT  191 (463)
T ss_dssp             CHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEESEEEECCCCE
T ss_pred             ceeecccccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeCEEEECCCCC
Confidence                      0  0134455666666777999999999999987321 333  256666665    89999999999987


Q ss_pred             cChh
Q 013952          262 PLIS  265 (433)
Q Consensus       262 p~~~  265 (433)
                      |...
T Consensus       192 p~~p  195 (463)
T 3s5w_A          192 PRIP  195 (463)
T ss_dssp             ECCC
T ss_pred             CCCc
Confidence            7643

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=98.20  E-value=1.3e-05  Score=79.70  Aligned_cols=101  Identities=18%  Similarity=0.234  Sum_probs=79.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC------------------------------------------
Q 013952          162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP------------------------------------------  199 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~------------------------------------------  199 (433)
                      ...|+|||+|+.|+-+|..|++.|.+|+++++.+....                                          
T Consensus        23 ~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~~~~~G~~l~p~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~  102 (591)
T 3i3l_A           23 RSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRYRVGESLLPGTMSILNRLGLQEKIDAQNYVKKPSATFLWGQDQ  102 (591)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCCCCCCBCCHHHHHHHHHTTCHHHHHHHCCEEECEEEEECSSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCCCCceeeeECHHHHHHHHHcCCcHHHHhcCCcccCCcEEEecCCC
Confidence            46899999999999999999999999999987621000                                          


Q ss_pred             ---------------------CCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC-CC--cEEECCEEE
Q 013952          200 ---------------------RLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK-DG--RTLEADIVV  255 (433)
Q Consensus       200 ---------------------~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~-~g--~~i~~d~vi  255 (433)
                                           ......+.+.+.+.+++.||+++++++|+++..+ ++....|.+. +|  .++.+|.||
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~-~g~~~~V~~~~~G~~~~i~AdlVV  181 (591)
T 3i3l_A          103 APWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRGITVHEETPVTDVDLS-DPDRVVLTVRRGGESVTVESDFVI  181 (591)
T ss_dssp             CCEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEECC-STTCEEEEEEETTEEEEEEESEEE
T ss_pred             ccceeecccccccccccCeeEEEcHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCCEEEEEEecCCceEEEEcCEEE
Confidence                                 0001356677788888899999999999999863 4556778776 66  579999999


Q ss_pred             EcccCccC
Q 013952          256 VGVGGRPL  263 (433)
Q Consensus       256 ~a~G~~p~  263 (433)
                      .|+|....
T Consensus       182 ~AdG~~S~  189 (591)
T 3i3l_A          182 DAGGSGGP  189 (591)
T ss_dssp             ECCGGGCH
T ss_pred             ECCCCcch
Confidence            99998653

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=98.20  E-value=8.6e-06  Score=78.72  Aligned_cols=101  Identities=22%  Similarity=0.261  Sum_probs=78.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC----C--------------------------------------
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP----R--------------------------------------  200 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~----~--------------------------------------  200 (433)
                      ..|+|||+|+.|+.+|..|++.|.+|+++++.+....    .                                      
T Consensus         7 ~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~~~g~~~~g~~l~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~~~   86 (453)
T 3atr_A            7 YDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGEELENKINGIKLYSPDMQT   86 (453)
T ss_dssp             CSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGGGTTCSCCCCEEEHHHHHHTTCCCCCGGGEEEEEEEEEEECTTSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCcccccccccHHHHHHhcCCCCchHHHHhhhcceEEECCCCce
Confidence            4799999999999999999999999999987653210    0                                      


Q ss_pred             ----------CCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC---CCc--EEECCEEEEcccCccCh
Q 013952          201 ----------LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK---DGR--TLEADIVVVGVGGRPLI  264 (433)
Q Consensus       201 ----------~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~---~g~--~i~~d~vi~a~G~~p~~  264 (433)
                                .....+.+.+.+.+++.|++++++++|+++.. +++.+..|.+.   +|+  ++.+|.||.|+|..+..
T Consensus        87 ~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~-~~~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~s~v  164 (453)
T 3atr_A           87 VWTVNGEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIF-EDGYVKGAVLFNRRTNEELTVYSKVVVEATGYSRSF  164 (453)
T ss_dssp             EEEEEEEEEEECHHHHHHHHHHHHHHTTCEEESSEEEEEEEE-ETTEEEEEEEEETTTTEEEEEECSEEEECCGGGCTT
T ss_pred             EEeECCCcEEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEE-ECCEEEEEEEEEcCCCceEEEEcCEEEECcCCchhh
Confidence                      00124667777788889999999999999987 35555545553   665  79999999999976654

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.19  E-value=2.4e-06  Score=84.16  Aligned_cols=97  Identities=14%  Similarity=0.204  Sum_probs=73.5

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhCC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKG   85 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (433)
                      .+++|||||..|+.+|..|++.|.+   |+++++.......  +.         .           .....+.+.+++.|
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~~G~~---Vtlv~~~~~~l~~--~~---------~-----------~~~~~l~~~l~~~G  269 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNATGRR---TVMLVRTEPLKLI--KD---------N-----------ETRAYVLDRMKEQG  269 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSCTTTTC--CS---------H-----------HHHHHHHHHHHHTT
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCe---EEEEEecCccccc--cc---------H-----------HHHHHHHHHHHhCC
Confidence            6899999999999999999999876   9999988211100  00         0           00123466778899


Q ss_pred             cEEEeCceEEEEECC--C----CEEEeCCCc-EEecceEEEccCCCccc
Q 013952           86 IELILSTEIVRADIA--S----KTLLSATGL-IFKYQILVIATGSTVLR  127 (433)
Q Consensus        86 v~~~~~~~v~~i~~~--~----~~v~~~~~~-~~~~d~lvlAtG~~~~~  127 (433)
                      ++++.++.|..+..+  .    ..|.+.+|+ ++.+|.+|+|+|.+|..
T Consensus       270 V~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p~~  318 (523)
T 1mo9_A          270 MEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRS  318 (523)
T ss_dssp             CEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCCEECC
T ss_pred             cEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCCccCC
Confidence            999999999999863  3    236677776 89999999999998865

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=98.19  E-value=2.7e-06  Score=83.16  Aligned_cols=99  Identities=15%  Similarity=0.239  Sum_probs=73.2

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      ..+++|||||+.|+.+|..|++.|.+   |+++++......+      .        +.       ......+.+.+++.
T Consensus       194 ~~~vvVIGgG~ig~E~A~~l~~~g~~---Vtlv~~~~~~l~~------~--------~~-------~~~~~~l~~~l~~~  249 (490)
T 2bc0_A          194 IKRVAVVGAGYIGVELAEAFQRKGKE---VVLIDVVDTCLAG------Y--------YD-------RDLTDLMAKNMEEH  249 (490)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSSTTTT------T--------SC-------HHHHHHHHHHHHTT
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCe---EEEEEcccchhhh------H--------HH-------HHHHHHHHHHHHhC
Confidence            46899999999999999999999876   9999988211100      0        00       00012345667789


Q ss_pred             CcEEEeCceEEEEECCCC--EEEeCCCcEEecceEEEccCCCcccc
Q 013952           85 GIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRL  128 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~~~  128 (433)
                      |++++.++.+..++.+++  .+.+ +++++++|.+|+|+|.+|...
T Consensus       250 GV~i~~~~~v~~i~~~~~v~~v~~-~g~~i~~D~Vi~a~G~~p~~~  294 (490)
T 2bc0_A          250 GIQLAFGETVKEVAGNGKVEKIIT-DKNEYDVDMVILAVGFRPNTT  294 (490)
T ss_dssp             TCEEEETCCEEEEECSSSCCEEEE-SSCEEECSEEEECCCEEECCG
T ss_pred             CeEEEeCCEEEEEEcCCcEEEEEE-CCcEEECCEEEECCCCCcChH
Confidence            999999999999986443  3555 667899999999999888643

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.19  E-value=1.5e-06  Score=84.87  Aligned_cols=98  Identities=13%  Similarity=0.170  Sum_probs=73.3

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      ..+++|||||+.|+-+|..|++.|.+   |+++++......                  .+.    ......+.+.+++.
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~G~~---Vtlv~~~~~~l~------------------~~~----~~~~~~l~~~l~~~  239 (482)
T 1ojt_A          185 PGKLLIIGGGIIGLEMGTVYSTLGSR---LDVVEMMDGLMQ------------------GAD----RDLVKVWQKQNEYR  239 (482)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCE---EEEECSSSSSST------------------TSC----HHHHHHHHHHHGGG
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEEECCcccc------------------ccC----HHHHHHHHHHHHhc
Confidence            46899999999999999999999876   999998811110                  000    00012345667788


Q ss_pred             CcEEEeCceEEEEECCCC--EEEeCC----CcEEecceEEEccCCCccc
Q 013952           85 GIELILSTEIVRADIASK--TLLSAT----GLIFKYQILVIATGSTVLR  127 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~--~v~~~~----~~~~~~d~lvlAtG~~~~~  127 (433)
                      |++++.++.+..++.+++  .+.+.+    ++++.+|.+++|+|.+|..
T Consensus       240 gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~~D~vv~a~G~~p~~  288 (482)
T 1ojt_A          240 FDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGRAPNG  288 (482)
T ss_dssp             EEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCCEEECG
T ss_pred             CCEEEECCEEEEEEEcCCeEEEEEeccCCCceEEEcCEEEECcCCCcCC
Confidence            999999999999976543  456655    6779999999999998865

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.18  E-value=1.1e-05  Score=73.83  Aligned_cols=98  Identities=14%  Similarity=0.107  Sum_probs=73.7

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc---cC--------CC---CCCHHHHHHHHHHHHhcCcEEEcCCeEEE
Q 013952          164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPW---CM--------PR---LFTADIAAFYEGYYANKGIKIIKGTVAVG  229 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~---~~--------~~---~~~~~~~~~l~~~l~~~GV~v~~~~~v~~  229 (433)
                      .|+|||+|+.|+.+|..+++.|.+|+++++...   .+        +.   ...+++.........+.++.+..+..+..
T Consensus         8 DvvIIG~GpAGl~aA~~l~~~g~~V~liE~~~~gG~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (312)
T 4gcm_A            8 DIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDIKSV   87 (312)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTGGGGGCSCBCCSTTCSSBCHHHHHHHHHHHHHHTTCEEEECCCCEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCeeecccccCCcCCccccchHHHHHHHHHHHhhccccccceeeeee
Confidence            589999999999999999999999999986421   00        11   12357777777888888888888877666


Q ss_pred             EEecCCCcEEEEEeCCCcEEECCEEEEcccCccChh
Q 013952          230 FTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS  265 (433)
Q Consensus       230 i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~  265 (433)
                      ...  ..  ..+...+++++.+|.+|+|||.+|...
T Consensus        88 ~~~--~~--~~~~~~~~~~~~~d~liiAtGs~~~~~  119 (312)
T 4gcm_A           88 EDK--GE--YKVINFGNKELTAKAVIIATGAEYKKI  119 (312)
T ss_dssp             EEC--SS--CEEEECSSCEEEEEEEEECCCEEECCC
T ss_pred             eee--ec--ceeeccCCeEEEeceeEEcccCccCcC
Confidence            554  22  234556778999999999999887643

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.18  E-value=2.4e-06  Score=83.22  Aligned_cols=100  Identities=13%  Similarity=0.173  Sum_probs=72.8

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      ..+++|||||+.|+.+|..|++.|.+   |+++++......+              .++       ......+.+.+++.
T Consensus       178 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~~~l~~--------------~~~-------~~~~~~l~~~l~~~  233 (474)
T 1zmd_A          178 PEKMVVIGAGVIGVELGSVWQRLGAD---VTAVEFLGHVGGV--------------GID-------MEISKNFQRILQKQ  233 (474)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSSCS--------------SCC-------HHHHHHHHHHHHHT
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCE---EEEEeccCccCCc--------------ccC-------HHHHHHHHHHHHHC
Confidence            36899999999999999999999876   9999988211100              000       00012345677889


Q ss_pred             CcEEEeCceEEEEECCCC---EEEe-----CCCcEEecceEEEccCCCcccc
Q 013952           85 GIELILSTEIVRADIASK---TLLS-----ATGLIFKYQILVIATGSTVLRL  128 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~---~v~~-----~~~~~~~~d~lvlAtG~~~~~~  128 (433)
                      |++++.++.+..++.++.   .+.+     .+++++++|.+|+|+|.+|...
T Consensus       234 Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~~p~~~  285 (474)
T 1zmd_A          234 GFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTK  285 (474)
T ss_dssp             TCEEECSEEEEEEEECTTSCEEEEEEETTSCCCEEEEESEEEECSCEEECCT
T ss_pred             CCEEEeCceEEEEEEcCCceEEEEEEecCCCCceEEEcCEEEECcCCCcCCC
Confidence            999999999999986553   2332     3556899999999999988653

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.17  E-value=2.5e-06  Score=82.81  Aligned_cols=98  Identities=15%  Similarity=0.175  Sum_probs=72.3

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      ..+++|||||+.|+-+|..|++.|.+   |+++++.....                  +.+.    ......+.+.+++.
T Consensus       171 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~~~l------------------~~~~----~~~~~~l~~~l~~~  225 (464)
T 2a8x_A          171 PKSIIIAGAGAIGMEFGYVLKNYGVD---VTIVEFLPRAL------------------PNED----ADVSKEIEKQFKKL  225 (464)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSS------------------TTSC----HHHHHHHHHHHHHH
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCe---EEEEEcCCccc------------------cccC----HHHHHHHHHHHHHc
Confidence            36899999999999999999999876   99999881111                  0000    00012345667788


Q ss_pred             CcEEEeCceEEEEECCCC--EEEeC-CC--cEEecceEEEccCCCccc
Q 013952           85 GIELILSTEIVRADIASK--TLLSA-TG--LIFKYQILVIATGSTVLR  127 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~--~v~~~-~~--~~~~~d~lvlAtG~~~~~  127 (433)
                      |++++.++.+..++.++.  .+.+. ++  +++.+|.+++|+|.+|..
T Consensus       226 gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~  273 (464)
T 2a8x_A          226 GVTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGFAPNV  273 (464)
T ss_dssp             TCEEECSCEEEEEEECSSCEEEEEESSSCEEEEEESEEEECSCEEECC
T ss_pred             CCEEEeCcEEEEEEEcCCeEEEEEEcCCceEEEEcCEEEECCCCCccC
Confidence            999999999999986553  34443 55  579999999999988864

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=98.16  E-value=3.6e-06  Score=82.44  Aligned_cols=98  Identities=14%  Similarity=0.236  Sum_probs=74.4

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      ..+++|||||+.|+..|..+++.|.+   |+++++.......  +.         .           .....+.+.+++.
T Consensus       182 ~~~vvViGgG~ig~E~A~~l~~~g~~---Vtlv~~~~~~l~~--~d---------~-----------~~~~~l~~~l~~~  236 (499)
T 1xdi_A          182 PDHLIVVGSGVTGAEFVDAYTELGVP---VTVVASQDHVLPY--ED---------A-----------DAALVLEESFAER  236 (499)
T ss_dssp             CSSEEEESCSHHHHHHHHHHHHTTCC---EEEECSSSSSSCC--SS---------H-----------HHHHHHHHHHHHT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEEcCCccccc--cC---------H-----------HHHHHHHHHHHHC
Confidence            36899999999999999999999876   9999988111100  00         0           0013456677889


Q ss_pred             CcEEEeCceEEEEECCCC--EEEeCCCcEEecceEEEccCCCccc
Q 013952           85 GIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLR  127 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~~  127 (433)
                      |++++.++.|..+..++.  .+.+.+++++.+|.+|+|+|.+|..
T Consensus       237 GV~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~  281 (499)
T 1xdi_A          237 GVRLFKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIGSVPNT  281 (499)
T ss_dssp             TCEEETTCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEECC
T ss_pred             CCEEEeCCEEEEEEEeCCEEEEEECCCcEEEcCEEEECCCCCcCC
Confidence            999999999999987653  3556677889999999999998865

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=98.15  E-value=2.7e-05  Score=77.64  Aligned_cols=102  Identities=22%  Similarity=0.335  Sum_probs=80.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhC------CCeEEEEccCCccCCC------------------------------------
Q 013952          163 GKAVVVGGGYIGLELSAALKIN------NIDVSMVYPEPWCMPR------------------------------------  200 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~------g~~V~li~~~~~~~~~------------------------------------  200 (433)
                      -.|+|||+|+.|+-+|..|++.      |.+|+++++.+.+...                                    
T Consensus        36 ~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~l~~~~l~~ll~~~~~~g~~~~~~~~~~~~~  115 (584)
T 2gmh_A           36 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEKGAPLNTPVTEDRFG  115 (584)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHHCTTHHHHTCCCCEECCEEEEE
T ss_pred             CCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCccccccccCHHHHHHHHHHHHhcCCceeeeechhhee
Confidence            4799999999999999999998      9999999875322100                                    


Q ss_pred             --------CC---C--------------HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCC------C---
Q 013952          201 --------LF---T--------------ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD------G---  246 (433)
Q Consensus       201 --------~~---~--------------~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~------g---  246 (433)
                              .+   +              ..+.+.+.+.+++.||++++++.+.++..++++.+..|.+.+      |   
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~~~  195 (584)
T 2gmh_A          116 ILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPK  195 (584)
T ss_dssp             EECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEE
T ss_pred             eeccCCCccccccCccccccCCCEEEeHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCccccCCCCcc
Confidence                    00   1              155677888888899999999999999875557777787753      3   


Q ss_pred             ------cEEECCEEEEcccCccCh
Q 013952          247 ------RTLEADIVVVGVGGRPLI  264 (433)
Q Consensus       247 ------~~i~~d~vi~a~G~~p~~  264 (433)
                            .++.+|.||.|.|.+...
T Consensus       196 ~~~~~g~~i~Ad~VV~AdG~~S~v  219 (584)
T 2gmh_A          196 TTFERGLELHAKVTIFAEGCHGHL  219 (584)
T ss_dssp             EEEECCCEEECSEEEECCCTTCHH
T ss_pred             cccCCceEEECCEEEEeeCCCchH
Confidence                  589999999999987653

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=98.14  E-value=5.7e-06  Score=81.28  Aligned_cols=97  Identities=11%  Similarity=0.030  Sum_probs=74.9

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHh
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   83 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (433)
                      ..+++|||||+.|+-.|..+++.|.+   |+|+++. ..+.                    +..    +....+...+++
T Consensus       223 P~~lvIIGgG~IGlE~A~~~~~lG~~---VTii~~~~~L~~--------------------~D~----ei~~~l~~~l~~  275 (542)
T 4b1b_A          223 PGKTLVVGASYVALECSGFLNSLGYD---VTVAVRSIVLRG--------------------FDQ----QCAVKVKLYMEE  275 (542)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHHTCC---EEEEESSCSSTT--------------------SCH----HHHHHHHHHHHH
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCe---EEEecccccccc--------------------cch----hHHHHHHHHHHh
Confidence            46899999999999999999999987   9999776 2111                    000    001345677888


Q ss_pred             CCcEEEeCceEEEEECCCCE--EEeCCCcEEecceEEEccCCCcccc
Q 013952           84 KGIELILSTEIVRADIASKT--LLSATGLIFKYQILVIATGSTVLRL  128 (433)
Q Consensus        84 ~~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d~lvlAtG~~~~~~  128 (433)
                      .+++++.+..+..+...+..  +.+.++.++.+|.+++|+|-+|+..
T Consensus       276 ~gi~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~D~vLvAvGR~Pnt~  322 (542)
T 4b1b_A          276 QGVMFKNGILPKKLTKMDDKILVEFSDKTSELYDTVLYAIGRKGDID  322 (542)
T ss_dssp             TTCEEEETCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEESCG
T ss_pred             hcceeecceEEEEEEecCCeEEEEEcCCCeEEEEEEEEcccccCCcc
Confidence            99999999999888766654  5567788899999999999988753

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=98.14  E-value=3.6e-06  Score=81.42  Aligned_cols=100  Identities=15%  Similarity=0.237  Sum_probs=72.8

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      ..+++|||||+.|+..|..|++.|.+   |+++++......+              .+.       ......+.+.+++.
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~~~l~~--------------~~~-------~~~~~~l~~~l~~~  204 (452)
T 2cdu_A          149 AKTITIIGSGYIGAELAEAYSNQNYN---VNLIDGHERVLYK--------------YFD-------KEFTDILAKDYEAH  204 (452)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCE---EEEEESSSSTTTT--------------TSC-------HHHHHHHHHHHHHT
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCCE---EEEEEcCCchhhh--------------hhh-------hhHHHHHHHHHHHC
Confidence            46899999999999999999998876   9999988211100              000       00012345677889


Q ss_pred             CcEEEeCceEEEEECCCCEE--EeCCCcEEecceEEEccCCCcccc
Q 013952           85 GIELILSTEIVRADIASKTL--LSATGLIFKYQILVIATGSTVLRL  128 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~~v--~~~~~~~~~~d~lvlAtG~~~~~~  128 (433)
                      |++++.++.+.+++.++..+  ...+++++.+|.+|+|+|.+|...
T Consensus       205 Gv~i~~~~~v~~i~~~~~~v~~v~~~g~~i~~D~vv~a~G~~p~~~  250 (452)
T 2cdu_A          205 GVNLVLGSKVAAFEEVDDEIITKTLDGKEIKSDIAILCIGFRPNTE  250 (452)
T ss_dssp             TCEEEESSCEEEEEEETTEEEEEETTSCEEEESEEEECCCEEECCG
T ss_pred             CCEEEcCCeeEEEEcCCCeEEEEEeCCCEEECCEEEECcCCCCCHH
Confidence            99999999999998633322  234678899999999999988643

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=98.13  E-value=2.2e-05  Score=74.65  Aligned_cols=101  Identities=16%  Similarity=0.160  Sum_probs=73.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCC------CCHHHH-----------------------------
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL------FTADIA-----------------------------  207 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~------~~~~~~-----------------------------  207 (433)
                      -+|+|||+|+.|+-+|..|++.|.+|+++++.+.+....      +.+...                             
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~~~~~~G~~i~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~   81 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAASSILPGYGIHINSFGKQALQECLPAENWLAFEEASRYIGGQSRFY   81 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCSSCCCCEEEECHHHHHHHHHHSCHHHHHHHHHHCEEECCCCEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCCCcCCCceEEeeCHHHHHHHHHcCChHHHHHhhhhhcccCcceeEe
Confidence            379999999999999999999999999998765432110      111100                             


Q ss_pred             ------------------------------HHHHHHHH-hcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEE
Q 013952          208 ------------------------------AFYEGYYA-NKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVV  256 (433)
Q Consensus       208 ------------------------------~~l~~~l~-~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~  256 (433)
                                                    ..+.+.|. ..+..+++++++++++..+++. ..+++.||+++++|+||-
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~v~~~~~v~~~~~~~~~~-v~v~~~dG~~~~adlvVg  160 (412)
T 4hb9_A           82 NERMRLLAVHGGISPMAGKIISEQRLSISRTELKEILNKGLANTIQWNKTFVRYEHIENGG-IKIFFADGSHENVDVLVG  160 (412)
T ss_dssp             CTTSCEEEC--------------CEEEEEHHHHHHHHHTTCTTTEECSCCEEEEEECTTSC-EEEEETTSCEEEESEEEE
T ss_pred             cCCcceecccCCccccccccccccceEeeHHHHHHHHHhhccceEEEEEEEEeeeEcCCCe-EEEEECCCCEEEeeEEEE
Confidence                                          11223332 2355788999999998755554 478999999999999999


Q ss_pred             cccCccCh
Q 013952          257 GVGGRPLI  264 (433)
Q Consensus       257 a~G~~p~~  264 (433)
                      |-|.+...
T Consensus       161 ADG~~S~v  168 (412)
T 4hb9_A          161 ADGSNSKV  168 (412)
T ss_dssp             CCCTTCHH
T ss_pred             CCCCCcch
Confidence            99976544

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.13  E-value=3.5e-06  Score=81.84  Aligned_cols=98  Identities=17%  Similarity=0.248  Sum_probs=71.5

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHH-Hh
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWY-KE   83 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~   83 (433)
                      ..+++|||||+.|+-+|..|++.|.+   |+++++......  .+                .    ......+.+.+ ++
T Consensus       174 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~~~l~--~~----------------d----~~~~~~l~~~l~~~  228 (468)
T 2qae_A          174 PKTMVVIGGGVIGLELGSVWARLGAE---VTVVEFAPRCAP--TL----------------D----EDVTNALVGALAKN  228 (468)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSST--TS----------------C----HHHHHHHHHHHHHH
T ss_pred             CceEEEECCCHHHHHHHHHHHHhCCE---EEEEecCCcccc--cC----------------C----HHHHHHHHHHHhhc
Confidence            36899999999999999999999876   999998811110  00                0    00013345667 88


Q ss_pred             CCcEEEeCceEEEEECCCC--EEEeC--CC--cEEecceEEEccCCCccc
Q 013952           84 KGIELILSTEIVRADIASK--TLLSA--TG--LIFKYQILVIATGSTVLR  127 (433)
Q Consensus        84 ~~v~~~~~~~v~~i~~~~~--~v~~~--~~--~~~~~d~lvlAtG~~~~~  127 (433)
                      .|++++.++.+..++.++.  .+.+.  ++  +++.+|.+|+|+|.+|..
T Consensus       229 ~gv~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vv~a~G~~p~~  278 (468)
T 2qae_A          229 EKMKFMTSTKVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGRRPFT  278 (468)
T ss_dssp             TCCEEECSCEEEEEEECSSSEEEEEECC---EEEEEESEEEECSCEEECC
T ss_pred             CCcEEEeCCEEEEEEEcCCeEEEEEEcCCCceEEEECCEEEECCCcccCC
Confidence            9999999999999986553  34444  55  579999999999988864

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.12  E-value=4.3e-06  Score=83.35  Aligned_cols=101  Identities=15%  Similarity=0.185  Sum_probs=72.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHhC--CCeEEEEccCCccCCC----------C-CC-H-HHHHHHHHHHHhcCcEEEcCCeE
Q 013952          163 GKAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPWCMPR----------L-FT-A-DIAAFYEGYYANKGIKIIKGTVA  227 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~--g~~V~li~~~~~~~~~----------~-~~-~-~~~~~l~~~l~~~GV~v~~~~~v  227 (433)
                      ++|+|||+|+.|+.+|..|++.  +.+|+++++.+.+.-.          . .+ . .+.+......++.|++++++++|
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V   81 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFANCGLPYHISGEIAQRSALVLQTPESFKARFNVEVRVKHEV   81 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTSSSCCGGGGBCCCHHHHHHHHCCEEETTEEE
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCccccccCchHHhcCCcCChHHhhccCHHHHHHhcCcEEEECCEE
Confidence            5799999999999999999988  7899999987653210          0 00 0 11122334445689999999999


Q ss_pred             EEEEecCCCcEEEEEe-CCCc--EEECCEEEEcccCccChh
Q 013952          228 VGFTTNADGEVKEVKL-KDGR--TLEADIVVVGVGGRPLIS  265 (433)
Q Consensus       228 ~~i~~~~~g~~~~v~~-~~g~--~i~~d~vi~a~G~~p~~~  265 (433)
                      .+++.  +++...+.. .+|+  ++.+|.+|+|||.+|...
T Consensus        82 ~~id~--~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p  120 (565)
T 3ntd_A           82 VAIDR--AAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIVP  120 (565)
T ss_dssp             EEEET--TTTEEEEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred             EEEEC--CCCEEEEEecCCCCeEEEECCEEEECCCCCCCCC
Confidence            99986  444444443 3343  799999999999877653

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=98.12  E-value=4.3e-06  Score=81.45  Aligned_cols=97  Identities=13%  Similarity=0.158  Sum_probs=71.8

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      ..+++|||||+.|+.+|..|++.|.+   |+++++......  .             +.       ......+.+.+++.
T Consensus       186 ~~~vvViGgG~~g~e~A~~l~~~g~~---Vtlv~~~~~~l~--~-------------~~-------~~~~~~l~~~l~~~  240 (480)
T 3cgb_A          186 VEDVTIIGGGAIGLEMAETFVELGKK---VRMIERNDHIGT--I-------------YD-------GDMAEYIYKEADKH  240 (480)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHTTCE---EEEECCGGGTTS--S-------------SC-------HHHHHHHHHHHHHT
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCe---EEEEEeCCchhh--c-------------CC-------HHHHHHHHHHHHHc
Confidence            47899999999999999999999876   999998711100  0             00       00012345667889


Q ss_pred             CcEEEeCceEEEEECCCCE--EEeCCCcEEecceEEEccCCCccc
Q 013952           85 GIELILSTEIVRADIASKT--LLSATGLIFKYQILVIATGSTVLR  127 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d~lvlAtG~~~~~  127 (433)
                      |++++.++.+..++.+++.  +.+ ++.++++|.+|+|+|..|..
T Consensus       241 Gv~i~~~~~v~~i~~~~~v~~v~~-~~~~i~~D~vi~a~G~~p~~  284 (480)
T 3cgb_A          241 HIEILTNENVKAFKGNERVEAVET-DKGTYKADLVLVSVGVKPNT  284 (480)
T ss_dssp             TCEEECSCCEEEEEESSBEEEEEE-TTEEEECSEEEECSCEEESC
T ss_pred             CcEEEcCCEEEEEEcCCcEEEEEE-CCCEEEcCEEEECcCCCcCh
Confidence            9999999999999876543  444 44589999999999988764

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=98.11  E-value=2.2e-05  Score=77.93  Aligned_cols=99  Identities=15%  Similarity=0.297  Sum_probs=75.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc-cC-----------------------CC------------------
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW-CM-----------------------PR------------------  200 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~-~~-----------------------~~------------------  200 (433)
                      -.|+|||+|..|+++|..+++.|.+|.++++.+. +.                       ..                  
T Consensus        22 yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~~~~~~d~~gi~f~~l~~  101 (641)
T 3cp8_A           22 YDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGEMGKAIDATGIQFRMLNR  101 (641)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCSHHHHHHHHEEEEEEECS
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCCCccccchhhhhHHHHHHHHHhcccHHHHHHHhcCCchhhccc
Confidence            4799999999999999999999999999987531 10                       00                  


Q ss_pred             -----------CCC-HHHHHHHHHHHHh-cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccC
Q 013952          201 -----------LFT-ADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL  263 (433)
Q Consensus       201 -----------~~~-~~~~~~l~~~l~~-~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~  263 (433)
                                 ..+ ..+...+.+.+++ .||+++. ..|..+.. +++.+.+|.+.+|..+.||.||+|+|..++
T Consensus       102 ~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~~-~~V~~L~~-d~g~V~GV~t~~G~~i~Ad~VVLATG~~s~  175 (641)
T 3cp8_A          102 SKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLLQ-DTVIGVSA-NSGKFSSVTVRSGRAIQAKAAILACGTFLN  175 (641)
T ss_dssp             SSCTTTCEEEEEECHHHHHHHHHHHHHTCTTEEEEE-CCEEEEEE-ETTEEEEEEETTSCEEEEEEEEECCTTCBT
T ss_pred             ccCccccchhhhcCHHHHHHHHHHHHHhCCCCEEEe-eEEEEEEe-cCCEEEEEEECCCcEEEeCEEEECcCCCCC
Confidence                       001 1455666777777 4999965 48888876 456677788889989999999999997654

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.11  E-value=2.5e-06  Score=82.93  Aligned_cols=98  Identities=16%  Similarity=0.307  Sum_probs=72.4

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      ..+++|||||+.|+.+|..|++.|.+   |+++++......  ...         .           .....+.+.+++.
T Consensus       177 ~~~vvViGgG~~g~e~A~~l~~~g~~---Vtli~~~~~~l~--~~~---------~-----------~~~~~l~~~l~~~  231 (470)
T 1dxl_A          177 PKKLVVIGAGYIGLEMGSVWGRIGSE---VTVVEFASEIVP--TMD---------A-----------EIRKQFQRSLEKQ  231 (470)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCE---EEEECSSSSSST--TSC---------H-----------HHHHHHHHHHHHS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCc---EEEEEcCCcccc--ccc---------H-----------HHHHHHHHHHHHc
Confidence            46899999999999999999999876   999998811110  000         0           0012345677889


Q ss_pred             CcEEEeCceEEEEECCCC--EEEeC---CC--cEEecceEEEccCCCccc
Q 013952           85 GIELILSTEIVRADIASK--TLLSA---TG--LIFKYQILVIATGSTVLR  127 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~--~v~~~---~~--~~~~~d~lvlAtG~~~~~  127 (433)
                      |++++.++.+..++.++.  .+.+.   ++  +++.+|.+++|+|.+|..
T Consensus       232 gv~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~  281 (470)
T 1dxl_A          232 GMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFT  281 (470)
T ss_dssp             SCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCCCEEECC
T ss_pred             CCEEEeCCEEEEEEEcCCeEEEEEEecCCCcceEEECCEEEECCCCCcCC
Confidence            999999999999987653  34443   44  679999999999998864

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=98.10  E-value=2.5e-05  Score=76.75  Aligned_cols=100  Identities=18%  Similarity=0.238  Sum_probs=76.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC--------C--------------------------------C--
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM--------P--------------------------------R--  200 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~--------~--------------------------------~--  200 (433)
                      ..|+|||+|+.|+-+|..|++.|.+|+++++.+...        +                                .  
T Consensus         8 ~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~   87 (512)
T 3e1t_A            8 FDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIGESLLPATVHGICAMLGLTDEMKRAGFPIKRGGTFRWGKEP   87 (512)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCHHHHTTHHHHTTCHHHHHTTTCCEECEEEEECSSCS
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCCCCCCCCcccCcchHHHHHHHhCcHHHHHHcCCccccCceEEecCCc
Confidence            479999999999999999999999999998764100        0                                0  


Q ss_pred             --------------------CCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEE--eCCCc--EEECCEEEE
Q 013952          201 --------------------LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVK--LKDGR--TLEADIVVV  256 (433)
Q Consensus       201 --------------------~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~--~~~g~--~i~~d~vi~  256 (433)
                                          .....+.+.+.+.+++.||+++++++|+++.. +++.+..|.  ..+|+  ++.+|.||.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~-~~~~v~gv~~~~~dG~~~~i~ad~VI~  166 (512)
T 3e1t_A           88 EPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSERKGVDVRERHEVIDVLF-EGERAVGVRYRNTEGVELMAHARFIVD  166 (512)
T ss_dssp             SCEEEESSSSSSSTTCCEEBCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEE-ETTEEEEEEEECSSSCEEEEEEEEEEE
T ss_pred             cccccccccCCCCCcceeeEecHHHHHHHHHHHHHhCCCEEEcCCEEEEEEE-ECCEEEEEEEEeCCCCEEEEEcCEEEE
Confidence                                00124566777788889999999999999987 455554444  45574  799999999


Q ss_pred             cccCccC
Q 013952          257 GVGGRPL  263 (433)
Q Consensus       257 a~G~~p~  263 (433)
                      |+|....
T Consensus       167 AdG~~S~  173 (512)
T 3e1t_A          167 ASGNRTR  173 (512)
T ss_dssp             CCCTTCS
T ss_pred             CCCcchH
Confidence            9997654

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=98.10  E-value=5.1e-06  Score=81.06  Aligned_cols=99  Identities=21%  Similarity=0.269  Sum_probs=74.7

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      ..+++|||+|+.|+..|..+++.|.+   |+++++......                  .+..    .....+.+.+++.
T Consensus       191 ~~~v~ViGgG~~g~e~A~~l~~~g~~---Vtli~~~~~~l~------------------~~~~----~~~~~l~~~l~~~  245 (484)
T 3o0h_A          191 PKSIVIVGGGYIGVEFANIFHGLGVK---TTLLHRGDLILR------------------NFDY----DLRQLLNDAMVAK  245 (484)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSST------------------TSCH----HHHHHHHHHHHHH
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCe---EEEEECCCcccc------------------ccCH----HHHHHHHHHHHHC
Confidence            46899999999999999999998876   999988711110                  0000    0012345667788


Q ss_pred             CcEEEeCceEEEEECCCC--EEEeCCCcEEecceEEEccCCCcccc
Q 013952           85 GIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRL  128 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~~~  128 (433)
                      |++++.++.|..+..++.  .+.+.+++++.+|.+|+|+|..|...
T Consensus       246 Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vi~A~G~~p~~~  291 (484)
T 3o0h_A          246 GISIIYEATVSQVQSTENCYNVVLTNGQTICADRVMLATGRVPNTT  291 (484)
T ss_dssp             TCEEESSCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEECCT
T ss_pred             CCEEEeCCEEEEEEeeCCEEEEEECCCcEEEcCEEEEeeCCCcCCC
Confidence            999999999999987544  56778888999999999999887643

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=98.08  E-value=1.6e-05  Score=73.78  Aligned_cols=94  Identities=15%  Similarity=0.193  Sum_probs=68.6

Q ss_pred             cEEEECCCHHHHHHHHHHHh---CCCeEEEEccCCccCC-------------------CCC---CH---HH---------
Q 013952          164 KAVVVGGGYIGLELSAALKI---NNIDVSMVYPEPWCMP-------------------RLF---TA---DI---------  206 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~---~g~~V~li~~~~~~~~-------------------~~~---~~---~~---------  206 (433)
                      +|+|||+|..|+-+|..|++   .|.+|+++++.+....                   .++   +.   .+         
T Consensus         3 dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~~gg~~~~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~   82 (342)
T 3qj4_A            3 QVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTTACSPHNPQCTADLGAQYITCTPHYAKKHQRFYDELLA   82 (342)
T ss_dssp             EEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSSSCGGGCEEECSSCTTCEEESSCCCEEECSSHHHHTHHHHHHHHH
T ss_pred             cEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCCCccceeeeecCCCCCceEecCCceEEcCchHHHHHHHHHHHHHh
Confidence            69999999999999999999   8999999987632110                   000   00   11         


Q ss_pred             -----------------------------HHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEc
Q 013952          207 -----------------------------AAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVG  257 (433)
Q Consensus       207 -----------------------------~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a  257 (433)
                                                   ...+....++.|++++++++|+++..++++  ..|.+.+|+.+.+|.||+|
T Consensus        83 ~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~i~~~~~V~~i~~~~~~--~~v~~~~g~~~~ad~vV~A  160 (342)
T 3qj4_A           83 YGVLRPLSSPIEGMVMKEGDCNFVAPQGISSIIKHYLKESGAEVYFRHRVTQINLRDDK--WEVSKQTGSPEQFDLIVLT  160 (342)
T ss_dssp             TTSCEECCSCEETCCC--CCEEEECTTCTTHHHHHHHHHHTCEEESSCCEEEEEECSSS--EEEEESSSCCEEESEEEEC
T ss_pred             CCCeecCchhhcceeccCCccceecCCCHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCE--EEEEECCCCEEEcCEEEEC
Confidence                                         111222334448999999999999884333  5688888877899999999


Q ss_pred             cc
Q 013952          258 VG  259 (433)
Q Consensus       258 ~G  259 (433)
                      ++
T Consensus       161 ~p  162 (342)
T 3qj4_A          161 MP  162 (342)
T ss_dssp             SC
T ss_pred             CC
Confidence            98

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=98.07  E-value=3e-06  Score=81.73  Aligned_cols=90  Identities=16%  Similarity=0.146  Sum_probs=70.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc-------CCCC-CCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC-------MPRL-FTADIAAFYEGYYANKGIKIIKGTVAVGFTT  232 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~-------~~~~-~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~  232 (433)
                      ..++|+|||+|+.|+.+|..|++.|.+|+++++.+.+       .+.+ ++.++.+...+.+++.||++++++.+..   
T Consensus       121 ~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~---  197 (456)
T 2vdc_G          121 LGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGLLVYGIPGFKLEKSVVERRVKLLADAGVIYHPNFEVGR---  197 (456)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHHTTCEEETTCCBTT---
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCcEEEeCCEecc---
Confidence            3578999999999999999999999999999987654       2221 4677888888899999999999987521   


Q ss_pred             cCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013952          233 NADGEVKEVKLKDGRTLEADIVVVGVGGR  261 (433)
Q Consensus       233 ~~~g~~~~v~~~~g~~i~~d~vi~a~G~~  261 (433)
                             .+.+.++ .+.+|.||+|+|..
T Consensus       198 -------~v~~~~~-~~~~d~vvlAtG~~  218 (456)
T 2vdc_G          198 -------DASLPEL-RRKHVAVLVATGVY  218 (456)
T ss_dssp             -------TBCHHHH-HSSCSEEEECCCCC
T ss_pred             -------EEEhhHh-HhhCCEEEEecCCC
Confidence                   1222222 35699999999985

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=98.06  E-value=1.9e-05  Score=75.19  Aligned_cols=101  Identities=24%  Similarity=0.317  Sum_probs=76.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCC----------------------------------------
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----------------------------------------  200 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~----------------------------------------  200 (433)
                      +..+|+|||+|+.|+-+|..|++.|.+|+++++.+.+...                                        
T Consensus        22 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~  101 (407)
T 3rp8_A           22 GHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMETFGGPLRRMAYRDFRS  101 (407)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC----CEEEECHHHHHHHHHTTCHHHHHHHSCCCCEEEEEETTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcCeeEEECHHHHHHHHHCCCHHHHHhhcCCCcceEEEECCC
Confidence            3568999999999999999999999999999986532100                                        


Q ss_pred             -C----C-----------------CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcc
Q 013952          201 -L----F-----------------TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGV  258 (433)
Q Consensus       201 -~----~-----------------~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~  258 (433)
                       .    +                 ...+.+.+.+.+++  ++++++++|++++.+++  ...+++.+|+++.+|.||.|.
T Consensus       102 g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~--~v~v~~~~g~~~~a~~vV~Ad  177 (407)
T 3rp8_A          102 GENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGR--DSVQFGKRVTRCEEDAD--GVTVWFTDGSSASGDLLIAAD  177 (407)
T ss_dssp             CCEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCG--GGEEESCCEEEEEEETT--EEEEEETTSCEEEESEEEECC
T ss_pred             CCEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCc--CEEEECCEEEEEEecCC--cEEEEEcCCCEEeeCEEEECC
Confidence             0    0                 01334455555554  89999999999987333  356888999999999999999


Q ss_pred             cCccChh
Q 013952          259 GGRPLIS  265 (433)
Q Consensus       259 G~~p~~~  265 (433)
                      |......
T Consensus       178 G~~S~vr  184 (407)
T 3rp8_A          178 GSHSALR  184 (407)
T ss_dssp             CTTCSSH
T ss_pred             CcChHHH
Confidence            9776553

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=98.06  E-value=1.1e-05  Score=81.36  Aligned_cols=33  Identities=39%  Similarity=0.558  Sum_probs=30.6

Q ss_pred             cCeEEEECCCHHHHHHHHHHH---H-cCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFA---K-QGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~---~-~g~~~~~V~lie~~   40 (433)
                      .+||||||||+||++||.+|+   + .|.+   |+||||.
T Consensus        22 ~~DVvVIG~G~AGl~AAl~aa~~~~~~G~~---V~vlEK~   58 (643)
T 1jnr_A           22 ETDILIIGGGFSGCGAAYEAAYWAKLGGLK---VTLVEKA   58 (643)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTCC---EEEECSS
T ss_pred             cCCEEEECcCHHHHHHHHHHhhhhhhCCCe---EEEEeCc
Confidence            479999999999999999999   5 7887   9999998

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=98.04  E-value=6.8e-06  Score=80.27  Aligned_cols=98  Identities=12%  Similarity=0.148  Sum_probs=70.3

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      ..+++|||||+.|+.+|..|++.|.+   |+++++......  ...         .           .....+.+.+++.
T Consensus       174 ~k~vvViGgG~ig~E~A~~l~~~g~~---Vtlv~~~~~~l~--~~d---------~-----------~~~~~l~~~l~~~  228 (492)
T 3ic9_A          174 PKSVAVFGPGVIGLELGQALSRLGVI---VKVFGRSGSVAN--LQD---------E-----------EMKRYAEKTFNEE  228 (492)
T ss_dssp             CSEEEEESSCHHHHHHHHHHHHTTCE---EEEECCTTCCTT--CCC---------H-----------HHHHHHHHHHHTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEEECCcccc--cCC---------H-----------HHHHHHHHHHhhC
Confidence            36899999999999999999999876   999998811110  000         0           0012334555556


Q ss_pred             CcEEEeCceEEEEECCCCE--EEeC--CC--cEEecceEEEccCCCcccc
Q 013952           85 GIELILSTEIVRADIASKT--LLSA--TG--LIFKYQILVIATGSTVLRL  128 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~~--v~~~--~~--~~~~~d~lvlAtG~~~~~~  128 (433)
                       ++++.++.+..+..++..  +.+.  +|  .++.+|.+++|+|..|...
T Consensus       229 -V~i~~~~~v~~i~~~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~~p~~~  277 (492)
T 3ic9_A          229 -FYFDAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAATGRKANVD  277 (492)
T ss_dssp             -SEEETTCEEEEEEECSSSEEEEEECTTCCEEEEEESEEEECSCCEESCS
T ss_pred             -cEEEECCEEEEEEEcCCEEEEEEEeCCCceEEEECCEEEEeeCCccCCC
Confidence             999999999998765543  4443  56  6799999999999988654

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=98.04  E-value=2.6e-05  Score=73.09  Aligned_cols=55  Identities=15%  Similarity=0.163  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013952          205 DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP  262 (433)
Q Consensus       205 ~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p  262 (433)
                      .+.+.+.+.+++.|++++.+++|+++..++++  ..+.+.+| ++.+|.||+|+|...
T Consensus       150 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~--~~v~~~~g-~~~a~~vV~a~G~~s  204 (372)
T 2uzz_A          150 LAIKTWIQLAKEAGCAQLFNCPVTAIRHDDDG--VTIETADG-EYQAKKAIVCAGTWV  204 (372)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEECSSS--EEEEESSC-EEEEEEEEECCGGGG
T ss_pred             HHHHHHHHHHHHCCCEEEcCCEEEEEEEcCCE--EEEEECCC-eEEcCEEEEcCCccH
Confidence            34556667778889999999999999873333  46777777 599999999999643

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=98.04  E-value=2.7e-05  Score=73.85  Aligned_cols=102  Identities=20%  Similarity=0.292  Sum_probs=71.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCC-------CC---HHH------------------------
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL-------FT---ADI------------------------  206 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~-------~~---~~~------------------------  206 (433)
                      ...+|+|||+|+.|+.+|..|++.|.+|+++++.+....+.       .+   ..+                        
T Consensus        25 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~  104 (398)
T 2xdo_A           25 SDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYYDLALPMGVNIADE  104 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTTCCCCSCCEECCTTTHHHHHHHTTCHHHHHHHCBCCCEEEECS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCccccccCCeeeeCCccHHHHHHhcChHHHHHHhhcccceEEECC
Confidence            35689999999999999999999999999999865422100       00   000                        


Q ss_pred             ----------------------HHHHHHHHHh--cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013952          207 ----------------------AAFYEGYYAN--KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP  262 (433)
Q Consensus       207 ----------------------~~~l~~~l~~--~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p  262 (433)
                                            ...+.+.|.+  .+++++++++|++++.++++  ..|++.+|+++.+|.||.|.|...
T Consensus       105 ~g~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~--v~v~~~~g~~~~ad~vV~AdG~~S  182 (398)
T 2xdo_A          105 KGNILSTKNVKPENRFDNPEINRNDLRAILLNSLENDTVIWDRKLVMLEPGKKK--WTLTFENKPSETADLVILANGGMS  182 (398)
T ss_dssp             SSEEEEECCCGGGTTSSCCEECHHHHHHHHHHTSCTTSEEESCCEEEEEECSSS--EEEEETTSCCEEESEEEECSCTTC
T ss_pred             CCCchhhccccccCCCCCceECHHHHHHHHHhhcCCCEEEECCEEEEEEECCCE--EEEEECCCcEEecCEEEECCCcch
Confidence                                  0012222221  13678999999999874333  468888998899999999999765


Q ss_pred             Ch
Q 013952          263 LI  264 (433)
Q Consensus       263 ~~  264 (433)
                      ..
T Consensus       183 ~v  184 (398)
T 2xdo_A          183 KV  184 (398)
T ss_dssp             SC
T ss_pred             hH
Confidence            43

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=98.04  E-value=2.7e-05  Score=76.93  Aligned_cols=100  Identities=24%  Similarity=0.252  Sum_probs=76.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC--------------------------------------------
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM--------------------------------------------  198 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~--------------------------------------------  198 (433)
                      ..|+|||+|+.|+-+|..|++.|.+|+++++.+...                                            
T Consensus         6 ~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~~   85 (535)
T 3ihg_A            6 VDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNPRTMELLRIGGVADEVVRADDIRGTQGDFVIRLAE   85 (535)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCCCCCCSCCBCHHHHHHHHHTTCHHHHHHSCCSSCTTSCCEEEEES
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCccceECHHHHHHHHHcCCHHHHHhhCCCcccccceeeeEEe
Confidence            479999999999999999999999999998764210                                            


Q ss_pred             -------------------------CC----CCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCc--EEEEEeCCC-
Q 013952          199 -------------------------PR----LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGE--VKEVKLKDG-  246 (433)
Q Consensus       199 -------------------------~~----~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~--~~~v~~~~g-  246 (433)
                                               +.    .-...+.+.+.+.+++.|+++++++++++++.+++++  ...+.+.++ 
T Consensus        86 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~~~v~v~~~~~~  165 (535)
T 3ihg_A           86 SVRGEILRTVSESFDDMVAATEPCTPAGWAMLSQDKLEPILLAQARKHGGAIRFGTRLLSFRQHDDDAGAGVTARLAGPD  165 (535)
T ss_dssp             SSSSCEEEEEESCHHHHHHTTGGGCSCCCBCCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEECGGGCSEEEEEEEETT
T ss_pred             ccCCceeeeccccccccccccccCCCCcccccCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCccccEEEEEEcCC
Confidence                                     00    0012456677888888899999999999998744411  345666555 


Q ss_pred             --cEEECCEEEEcccCcc
Q 013952          247 --RTLEADIVVVGVGGRP  262 (433)
Q Consensus       247 --~~i~~d~vi~a~G~~p  262 (433)
                        .++.||.||.|.|...
T Consensus       166 ~~~~i~a~~vV~AdG~~S  183 (535)
T 3ihg_A          166 GEYDLRAGYLVGADGNRS  183 (535)
T ss_dssp             EEEEEEEEEEEECCCTTC
T ss_pred             CeEEEEeCEEEECCCCcc
Confidence              6899999999999754

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=98.03  E-value=5.2e-06  Score=81.14  Aligned_cols=100  Identities=13%  Similarity=0.269  Sum_probs=69.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC---------CCCC-HHHHHHHHHHH--HhcCcEEEcCCeEEEE
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP---------RLFT-ADIAAFYEGYY--ANKGIKIIKGTVAVGF  230 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~---------~~~~-~~~~~~l~~~l--~~~GV~v~~~~~v~~i  230 (433)
                      ++|+|||+|+.|+.+|..|.+.+.+|++|++.+.+.-         ..++ .++...+.+.+  ++.+++++.+ ++++|
T Consensus        43 prVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~~~~~PlL~~va~G~l~~~~i~~p~~~~~~~~~~~v~~~~~-~v~~I  121 (502)
T 4g6h_A           43 PNVLILGSGWGAISFLKHIDTKKYNVSIISPRSYFLFTPLLPSAPVGTVDEKSIIEPIVNFALKKKGNVTYYEA-EATSI  121 (502)
T ss_dssp             CEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSEEECGGGGGGTTTTSSCGGGGEEEHHHHHTTCSSCEEEEEE-EEEEE
T ss_pred             CCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCCcccccchhHHhhccccHHHhhhhHHHHHHhhcCCeEEEEE-EEEEE
Confidence            4899999999999999999999999999998865321         0011 12222233333  3457888765 68888


Q ss_pred             EecCCCcEEEEEe------------------CCCcEEECCEEEEcccCccChh
Q 013952          231 TTNADGEVKEVKL------------------KDGRTLEADIVVVGVGGRPLIS  265 (433)
Q Consensus       231 ~~~~~g~~~~v~~------------------~~g~~i~~d~vi~a~G~~p~~~  265 (433)
                      +.  +.+...+..                  .++.++++|.+|+|+|.+|+..
T Consensus       122 D~--~~k~V~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs~~~~~  172 (502)
T 4g6h_A          122 NP--DRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNTF  172 (502)
T ss_dssp             EG--GGTEEEEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCCEECCT
T ss_pred             Eh--hhCEEEEeecccceeecccccccccccCCceEEeCCEEEEcCCcccccC
Confidence            76  333333322                  3456899999999999988764

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=98.02  E-value=1.5e-05  Score=77.87  Aligned_cols=99  Identities=16%  Similarity=0.182  Sum_probs=71.8

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHc----CCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhH
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQ----GVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEW   80 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~----g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (433)
                      ..+++|||||+.|+-+|..|++.    |.+   |+++++...+..+.              ++.       .....+.+.
T Consensus       180 ~~~vvViGgG~iG~E~A~~l~~~~~~~g~~---V~~v~~~~~~~~~~--------------l~~-------~~~~~~~~~  235 (493)
T 1m6i_A          180 VKSITIIGGGFLGSELACALGRKARALGTE---VIQLFPEKGNMGKI--------------LPE-------YLSNWTMEK  235 (493)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCE---EEEECSSSSTTTTT--------------SCH-------HHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhhhhcCCE---EEEEecCccccccc--------------CCH-------HHHHHHHHH
Confidence            36899999999999999998873    444   99998761111100              000       001234566


Q ss_pred             HHhCCcEEEeCceEEEEECCCC--EEEeCCCcEEecceEEEccCCCccc
Q 013952           81 YKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLR  127 (433)
Q Consensus        81 ~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~~  127 (433)
                      +++.|++++.++.+..++.++.  .|.+.+|+++.+|.+|+|+|..|..
T Consensus       236 l~~~GV~v~~~~~V~~i~~~~~~~~v~l~dG~~i~aD~Vv~a~G~~pn~  284 (493)
T 1m6i_A          236 VRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPNV  284 (493)
T ss_dssp             HHTTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCCEEECC
T ss_pred             HHhcCCEEEeCCEEEEEEecCCeEEEEECCCCEEECCEEEECCCCCccH
Confidence            7789999999999999875443  4677888899999999999998764

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=98.02  E-value=1.3e-05  Score=77.72  Aligned_cols=96  Identities=19%  Similarity=0.268  Sum_probs=72.1

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      ..+++|||||+.|+-+|..|++.|.+   |+++++......   ..         .           .....+.+.+++.
T Consensus       176 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~~~l~---~~---------~-----------~~~~~l~~~l~~~  229 (467)
T 1zk7_A          176 PERLAVIGSSVVALELAQAFARLGSK---VTVLARNTLFFR---ED---------P-----------AIGEAVTAAFRAE  229 (467)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSCTTTT---SC---------H-----------HHHHHHHHHHHHT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCE---EEEEEECCccCC---CC---------H-----------HHHHHHHHHHHhC
Confidence            36899999999999999999999876   999998811110   00         0           0013456677889


Q ss_pred             CcEEEeCceEEEEECCCCE--EEeCCCcEEecceEEEccCCCccc
Q 013952           85 GIELILSTEIVRADIASKT--LLSATGLIFKYQILVIATGSTVLR  127 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d~lvlAtG~~~~~  127 (433)
                      |++++.++.+..++.++..  +.+. +.++++|.+|+|+|..|..
T Consensus       230 Gv~i~~~~~v~~i~~~~~~~~v~~~-~~~i~aD~Vv~a~G~~p~~  273 (467)
T 1zk7_A          230 GIEVLEHTQASQVAHMDGEFVLTTT-HGELRADKLLVATGRTPNT  273 (467)
T ss_dssp             TCEEETTCCEEEEEEETTEEEEEET-TEEEEESEEEECSCEEESC
T ss_pred             CCEEEcCCEEEEEEEeCCEEEEEEC-CcEEEcCEEEECCCCCcCC
Confidence            9999999999999765543  4454 5579999999999998764

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=98.02  E-value=2.3e-05  Score=77.79  Aligned_cols=99  Identities=23%  Similarity=0.272  Sum_probs=76.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC-------------------------------------CC----C
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------------------------------------PR----L  201 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~-------------------------------------~~----~  201 (433)
                      ..|+|||+|+.|+-+|..|++.|.+|+++++.+...                                     ..    .
T Consensus        50 ~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~  129 (570)
T 3fmw_A           50 TDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQVAKGLPFAGIFTQG  129 (570)
T ss_dssp             -CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCBCSBCCBTTBCTTC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcccCCceeCCccccc
Confidence            479999999999999999999999999998753210                                     00    0


Q ss_pred             ----------------CCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe--CCC-cEEECCEEEEcccCcc
Q 013952          202 ----------------FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL--KDG-RTLEADIVVVGVGGRP  262 (433)
Q Consensus       202 ----------------~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~--~~g-~~i~~d~vi~a~G~~p  262 (433)
                                      ....+.+.+.+.+++.|++++++++|++++.++++  ..|++  .+| +++.+|.||.|.|.+.
T Consensus       130 ~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~--v~v~~~~~~G~~~~~a~~vV~ADG~~S  207 (570)
T 3fmw_A          130 LDFGLVDTRHPYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDAEA--VEVTVAGPSGPYPVRARYGVGCDGGRS  207 (570)
T ss_dssp             CBGGGSCCSCCSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCSSC--EEEEEEETTEEEEEEESEEEECSCSSC
T ss_pred             ccccccCCCCCeeEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCe--EEEEEEeCCCcEEEEeCEEEEcCCCCc
Confidence                            01356677788888889999999999999874444  34555  677 6899999999999765


Q ss_pred             C
Q 013952          263 L  263 (433)
Q Consensus       263 ~  263 (433)
                      .
T Consensus       208 ~  208 (570)
T 3fmw_A          208 T  208 (570)
T ss_dssp             H
T ss_pred             h
Confidence            3

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=98.01  E-value=9.6e-06  Score=78.63  Aligned_cols=98  Identities=21%  Similarity=0.176  Sum_probs=73.6

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      ..+++|||+|+.|+..|..+++.|.+   |+++++......  ...         .           .....+.+.+++.
T Consensus       170 ~~~v~ViGgG~~g~e~A~~l~~~g~~---Vt~v~~~~~~l~--~~~---------~-----------~~~~~l~~~l~~~  224 (463)
T 4dna_A          170 PESILIAGGGYIAVEFANIFHGLGVK---TTLIYRGKEILS--RFD---------Q-----------DMRRGLHAAMEEK  224 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSST--TSC---------H-----------HHHHHHHHHHHHT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEEcCCcccc--ccC---------H-----------HHHHHHHHHHHHC
Confidence            46899999999999999999998876   999988721110  000         0           0013345667889


Q ss_pred             CcEEEeCceEEEEECCC-C--EEE-eCCCcEEecceEEEccCCCcccc
Q 013952           85 GIELILSTEIVRADIAS-K--TLL-SATGLIFKYQILVIATGSTVLRL  128 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~-~--~v~-~~~~~~~~~d~lvlAtG~~~~~~  128 (433)
                      |++++.++.+..+..++ .  .|. +.+++ +.+|.+|+|+|..|...
T Consensus       225 Gv~i~~~~~v~~i~~~~~~~~~v~~~~~g~-i~aD~Vv~a~G~~p~~~  271 (463)
T 4dna_A          225 GIRILCEDIIQSVSADADGRRVATTMKHGE-IVADQVMLALGRMPNTN  271 (463)
T ss_dssp             TCEEECSCCEEEEEECTTSCEEEEESSSCE-EEESEEEECSCEEESCT
T ss_pred             CCEEECCCEEEEEEEcCCCEEEEEEcCCCe-EEeCEEEEeeCcccCCC
Confidence            99999999999998753 2  566 77777 99999999999887644

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.01  E-value=1.3e-05  Score=78.02  Aligned_cols=99  Identities=13%  Similarity=0.224  Sum_probs=72.9

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      ..+++|||+|+.|+-.|..|++.|.+   |+++++......                  .+.    ......+.+.+++.
T Consensus       180 ~~~v~ViGgG~~g~e~A~~l~~~g~~---Vtlv~~~~~~l~------------------~~~----~~~~~~l~~~l~~~  234 (476)
T 3lad_A          180 PGKLGVIGAGVIGLELGSVWARLGAE---VTVLEAMDKFLP------------------AVD----EQVAKEAQKILTKQ  234 (476)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSSSST------------------TSC----HHHHHHHHHHHHHT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCc---EEEEecCCCcCc------------------ccC----HHHHHHHHHHHHhC
Confidence            46899999999999999999999876   999998811110                  000    00013345667889


Q ss_pred             CcEEEeCceEEEEECCCC--EEEeCCC---cEEecceEEEccCCCcccc
Q 013952           85 GIELILSTEIVRADIASK--TLLSATG---LIFKYQILVIATGSTVLRL  128 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~--~v~~~~~---~~~~~d~lvlAtG~~~~~~  128 (433)
                      |++++.++.+..+..+++  .+.+.++   +++.+|.+++|+|..|...
T Consensus       235 Gv~v~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~D~vi~a~G~~p~~~  283 (476)
T 3lad_A          235 GLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGRRPVTT  283 (476)
T ss_dssp             TEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSCEEECCT
T ss_pred             CCEEEECCEEEEEEEcCCEEEEEEEeCCCcEEEECCEEEEeeCCcccCC
Confidence            999999999999986554  3555544   5799999999999888653

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=98.00  E-value=6.8e-06  Score=83.14  Aligned_cols=33  Identities=30%  Similarity=0.438  Sum_probs=31.3

Q ss_pred             cCeEEEECCCHHHHHHHHHHHH-----cCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAK-----QGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~-----~g~~~~~V~lie~~   40 (433)
                      .+||+||||||+||++|..|++     .|++   |+|||+.
T Consensus         8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~---v~viE~~   45 (665)
T 1pn0_A            8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLK---VRIIDKR   45 (665)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHSTTCC---EEEECSS
T ss_pred             CCcEEEECcCHHHHHHHHHHhccccccCCCC---EEEEeCC
Confidence            5799999999999999999999     9988   9999987

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=97.99  E-value=9.5e-05  Score=73.05  Aligned_cols=57  Identities=30%  Similarity=0.480  Sum_probs=46.2

Q ss_pred             HHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccCh
Q 013952          207 AAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI  264 (433)
Q Consensus       207 ~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~  264 (433)
                      .+.+.+.+++.||+++.+ +|+++..++++.+..|.+.+|+++.+|.||.|+|.....
T Consensus       168 ~~~L~~~a~~~gv~~~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~~s~~  224 (538)
T 2aqj_A          168 ADFLKRWAVERGVNRVVD-EVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGMRGLL  224 (538)
T ss_dssp             HHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEETTSCEECCSEEEECCGGGCCC
T ss_pred             HHHHHHHHHHCCCEEEEe-eEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCCchhh
Confidence            345566677789999999 899998755666678888888889999999999976544

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=97.98  E-value=4e-06  Score=81.09  Aligned_cols=37  Identities=27%  Similarity=0.353  Sum_probs=33.6

Q ss_pred             CCCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      |++.++||+|||||++||+||.+|++.|++   |+|+|++
T Consensus         1 m~~~~~~v~iiG~G~~Gl~aA~~l~~~g~~---v~v~E~~   37 (453)
T 2yg5_A            1 VPTLQRDVAIVGAGPSGLAAATALRKAGLS---VAVIEAR   37 (453)
T ss_dssp             -CEEEEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSS
T ss_pred             CCCCcCCEEEECCCHHHHHHHHHHHHCCCc---EEEEECC
Confidence            666678999999999999999999999987   9999998

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=97.95  E-value=1.4e-05  Score=78.12  Aligned_cols=99  Identities=18%  Similarity=0.279  Sum_probs=72.0

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      ..+++|||||+.|+-.|..|++.|.+   |+++++......                  .+.    ......+.+.+++.
T Consensus       198 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~~~l~------------------~~d----~~~~~~l~~~l~~~  252 (491)
T 3urh_A          198 PASMIVVGGGVIGLELGSVWARLGAK---VTVVEFLDTILG------------------GMD----GEVAKQLQRMLTKQ  252 (491)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCE---EEEECSSSSSSS------------------SSC----HHHHHHHHHHHHHT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCE---EEEEeccccccc------------------cCC----HHHHHHHHHHHHhC
Confidence            46899999999999999999999876   999988711110                  000    00012345667788


Q ss_pred             CcEEEeCceEEEEECCCCE--EEeCC---C--cEEecceEEEccCCCcccc
Q 013952           85 GIELILSTEIVRADIASKT--LLSAT---G--LIFKYQILVIATGSTVLRL  128 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~~--v~~~~---~--~~~~~d~lvlAtG~~~~~~  128 (433)
                      |++++.++.+..+..++..  +.+.+   +  .++.+|.+|+|+|..|...
T Consensus       253 gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~  303 (491)
T 3urh_A          253 GIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRKPSTD  303 (491)
T ss_dssp             TCEEECSEEEEEEEEETTEEEEEEEETTSCCCEEEEESEEEECCCCEECCT
T ss_pred             CCEEEECCeEEEEEEeCCEEEEEEEecCCCceEEEEcCEEEEeeCCccCCC
Confidence            9999999999988765543  44432   4  5799999999999887653

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=97.95  E-value=3.1e-05  Score=75.06  Aligned_cols=97  Identities=16%  Similarity=0.150  Sum_probs=70.7

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCC------------------------------CCCH-HH------
Q 013952          164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR------------------------------LFTA-DI------  206 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~------------------------------~~~~-~~------  206 (433)
                      .++|||+|+.|+.+|..|++.|.+|+++++.+.+...                              .++. .+      
T Consensus         6 DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (466)
T 3l8k_A            6 DVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLTNIANVKIPLDFSTVQDRKDY   85 (466)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHCSCCCCCHHHHHHHHHH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcccccCCCchHHHHHHHHHHHHHHhcccCCCCcCHHHHHHHHHh
Confidence            6999999999999999999999999999966543100                              0111 11      


Q ss_pred             ----H--HHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcE--EECCEEEEcccCccChh
Q 013952          207 ----A--AFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRT--LEADIVVVGVGGRPLIS  265 (433)
Q Consensus       207 ----~--~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~--i~~d~vi~a~G~~p~~~  265 (433)
                          .  ..+.+.+++.||+++.+ .+..+..    ....|.+.+|++  +.+|.+|+|+|.+|...
T Consensus        86 ~~~l~~~~~~~~~~~~~~v~~~~g-~v~~id~----~~~~V~~~~g~~~~~~~d~lviAtG~~p~~p  147 (466)
T 3l8k_A           86 VQELRFKQHKRNMSQYETLTFYKG-YVKIKDP----THVIVKTDEGKEIEAETRYMIIASGAETAKL  147 (466)
T ss_dssp             HHHHHHHHHHHHHTTCTTEEEESE-EEEEEET----TEEEEEETTSCEEEEEEEEEEECCCEEECCC
T ss_pred             heeccccchHHHHHHhCCCEEEEe-EEEEecC----CeEEEEcCCCcEEEEecCEEEECCCCCccCC
Confidence                1  33444556789999887 5666643    235677888888  99999999999877643

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=97.94  E-value=1.3e-05  Score=78.19  Aligned_cols=97  Identities=16%  Similarity=0.120  Sum_probs=71.0

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHh
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   83 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (433)
                      ..+++|||||+.|+-.|..|++.|.+   |+++++. ..+.                    +..    .....+.+.+++
T Consensus       187 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~~l~~--------------------~d~----~~~~~l~~~l~~  239 (483)
T 3dgh_A          187 PGKTLVVGAGYIGLECAGFLKGLGYE---PTVMVRSIVLRG--------------------FDQ----QMAELVAASMEE  239 (483)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSCSSTT--------------------SCH----HHHHHHHHHHHH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCE---EEEEeCCCCCcc--------------------cCH----HHHHHHHHHHHh
Confidence            35899999999999999999999876   9999876 1110                    000    001234567788


Q ss_pred             CCcEEEeCceEEEEECCCC---EEEeCCCc-----EEecceEEEccCCCcccc
Q 013952           84 KGIELILSTEIVRADIASK---TLLSATGL-----IFKYQILVIATGSTVLRL  128 (433)
Q Consensus        84 ~~v~~~~~~~v~~i~~~~~---~v~~~~~~-----~~~~d~lvlAtG~~~~~~  128 (433)
                      .|++++.++.+..+...+.   .|.+.++.     ++.+|.+++|+|..|...
T Consensus       240 ~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~~p~~~  292 (483)
T 3dgh_A          240 RGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVD  292 (483)
T ss_dssp             TTCCEEETEEEEEEEECTTSCEEEEEEETTTCCEEEEEESEEEECSCEEECCG
T ss_pred             CCCEEEeCCEEEEEEEcCCCcEEEEEecCCCCceeEEEcCEEEECcccccCcC
Confidence            9999999999998876332   35555543     789999999999887643

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=97.93  E-value=1.2e-05  Score=78.22  Aligned_cols=99  Identities=16%  Similarity=0.144  Sum_probs=71.6

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      ..+++|||||+.|+-+|..|++.|.+   |+++++......  ...         .           .....+.+.+++.
T Consensus       187 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~~~l~--~~d---------~-----------~~~~~~~~~l~~~  241 (478)
T 3dk9_A          187 PGRSVIVGAGYIAVEMAGILSALGSK---TSLMIRHDKVLR--SFD---------S-----------MISTNCTEELENA  241 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSCT--TSC---------H-----------HHHHHHHHHHHHT
T ss_pred             CccEEEECCCHHHHHHHHHHHHcCCe---EEEEEeCCcccc--ccC---------H-----------HHHHHHHHHHHHC
Confidence            36899999999999999999999876   999988711110  000         0           0012345677889


Q ss_pred             CcEEEeCceEEEEECCC-C---EEEeCC---C----cEEecceEEEccCCCcccc
Q 013952           85 GIELILSTEIVRADIAS-K---TLLSAT---G----LIFKYQILVIATGSTVLRL  128 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~-~---~v~~~~---~----~~~~~d~lvlAtG~~~~~~  128 (433)
                      |++++.++.+..+.... .   .+.+.+   +    .++.+|.+++|+|..|...
T Consensus       242 gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p~~~  296 (478)
T 3dk9_A          242 GVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTK  296 (478)
T ss_dssp             TCEEETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEEESCT
T ss_pred             CCEEEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeeccccCCC
Confidence            99999999999987543 2   345544   2    5789999999999887653

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=97.93  E-value=7.9e-06  Score=77.53  Aligned_cols=34  Identities=18%  Similarity=0.350  Sum_probs=31.8

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHc-CCCCCcEEEEcCC
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQ-GVKPGELAIISKE   40 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~-g~~~~~V~lie~~   40 (433)
                      .++||+|||||++|++||..|++. |++   |+|+|++
T Consensus         6 ~~~~v~IiGaG~~Gl~aA~~L~~~~g~~---v~v~E~~   40 (399)
T 1v0j_A            6 ARFDLFVVGSGFFGLTIAERVATQLDKR---VLVLERR   40 (399)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHHHSCCC---EEEECSS
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHhCCCC---EEEEeCC
Confidence            368999999999999999999998 887   9999998

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=97.92  E-value=9.1e-05  Score=72.33  Aligned_cols=102  Identities=23%  Similarity=0.387  Sum_probs=78.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCC----------------------------------------
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----------------------------------------  200 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~----------------------------------------  200 (433)
                      ....|+|||+|+.|+-+|..|++.|.+|+++++.+.....                                        
T Consensus        11 ~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~   90 (499)
T 2qa2_A           11 SDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGPVETSTQGHFGGRPVD   90 (499)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCSCCEESEEEETTEEEE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHhccccccceecceecc
Confidence            3468999999999999999999999999999875321100                                        


Q ss_pred             ------CC-------CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCc---EEECCEEEEcccCccCh
Q 013952          201 ------LF-------TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGR---TLEADIVVVGVGGRPLI  264 (433)
Q Consensus       201 ------~~-------~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~---~i~~d~vi~a~G~~p~~  264 (433)
                            ..       ...+.+.+.+.+++.|+++++++++.+++.++++  ..+++.++.   ++.+|.||.|.|.+...
T Consensus        91 ~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--v~v~~~~~~g~~~~~a~~vVgADG~~S~V  168 (499)
T 2qa2_A           91 FGVLEGAHYGVKAVPQSTTESVLEEWALGRGAELLRGHTVRALTDEGDH--VVVEVEGPDGPRSLTTRYVVGCDGGRSTV  168 (499)
T ss_dssp             GGGSTTCCCEEEEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECSSC--EEEEEECSSCEEEEEEEEEEECCCTTCHH
T ss_pred             cccCCCCCCceEecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCE--EEEEEEcCCCcEEEEeCEEEEccCcccHH
Confidence                  00       1356667777888889999999999999874444  356776664   79999999999976543

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=97.91  E-value=0.0001  Score=67.47  Aligned_cols=168  Identities=15%  Similarity=0.077  Sum_probs=104.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhC--CCeEEEEccCCccCCC---------------------------------C----C
Q 013952          162 NGKAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPWCMPR---------------------------------L----F  202 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~--g~~V~li~~~~~~~~~---------------------------------~----~  202 (433)
                      ...|+|||+|+.|+.+|..|++.  |.+|+++++.+.+...                                 +    .
T Consensus        79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~G~~~~~~~  158 (344)
T 3jsk_A           79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLGGQLFSAMVMRKPADVFLDEVGVPYEDEGDYVVVKH  158 (344)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTTTCCBTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESC
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCccccCCccchhhhcchHHHHHHHHcCCcccccCCeEEEec
Confidence            45899999999999999999997  9999999876432100                                 0    0


Q ss_pred             CHHHHHHHHHHHHh-cCcEEEcCCeEEEEEecCC----------------C--cEEEEEeC--------------CCcEE
Q 013952          203 TADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNAD----------------G--EVKEVKLK--------------DGRTL  249 (433)
Q Consensus       203 ~~~~~~~l~~~l~~-~GV~v~~~~~v~~i~~~~~----------------g--~~~~v~~~--------------~g~~i  249 (433)
                      ..++.+.+.+.+++ .|++++.++.+.++..+++                +  ++..|...              +..++
T Consensus       159 ~~d~~~~L~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~rV~GVv~~~~~v~~~g~~~~~~d~~~i  238 (344)
T 3jsk_A          159 AALFTSTVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVSMHHDDQSAMDPNTI  238 (344)
T ss_dssp             HHHHHHHHHHHHHTCTTEEEEETEEEEEEEEEEC----------------CCEEEEEEEEEEHHHHTTSSSSSCCBCEEE
T ss_pred             HHHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCcccccccccccccccCCCceEeEEEeeeeeeeccCCcccccCceEE
Confidence            13445666666776 5999999999999876332                2  56666542              22479


Q ss_pred             ECCEEEEcccCccCh-hhh-----hccccc-CCCcEEeCCCC-------CC--CCCCeEEcCccccccccccCccccccc
Q 013952          250 EADIVVVGVGGRPLI-SLF-----KGQVAE-NKGGIETDDFF-------KT--SADDVYAVGDVATFPMKLYREMRRVEH  313 (433)
Q Consensus       250 ~~d~vi~a~G~~p~~-~~~-----~~~~~~-~~g~i~vd~~~-------~t--~~~~vfa~Gd~~~~~~~~~~~~~~~~~  313 (433)
                      .++.||.|+|..... .++     ..++.. -.|.-..+...       .|  -+|++|++|=.+....   |.++--+.
T Consensus       239 ~Ak~VV~ATG~~s~v~~~~~~~l~~~~~~~~~~g~~~~~~~~~e~~~v~~t~~v~~gl~~~gm~~~~~~---g~~rmgp~  315 (344)
T 3jsk_A          239 NAPVIISTTGHDGPFGAFSVKRLVSMKQMERLNGMRGLDMQSAEDAIVNNTREIVPGLIVGGMELSEID---GANRMGPT  315 (344)
T ss_dssp             ECSEEEECCCSSSSSSCHHHHHHHHTTSSSCCCCCEEECHHHHHHHHHHTCEEEETTEEECGGGHHHHH---TCEECCSC
T ss_pred             EcCEEEECCCCCchhhHHHHHHHhhcCcccccCCCcccccccchhhhcccCceEcCCEEEechhhHhhc---CCCCCCcc
Confidence            999999999976542 111     112211 11222222110       12  3699999997664321   22221133


Q ss_pred             HHHHHHHHHHHHHHHhccC
Q 013952          314 VDHARKSAEQAVKTIMATE  332 (433)
Q Consensus       314 ~~~A~~~g~~aa~~i~~~~  332 (433)
                      ...=...|+.||+.|+..+
T Consensus       316 fg~m~~sg~~~a~~~~~~~  334 (344)
T 3jsk_A          316 FGAMALSGVKAAHEAIRVF  334 (344)
T ss_dssp             CHHHHHHHHHHHHHHHHHH
T ss_pred             cceeeecCHHHHHHHHHHH
Confidence            3333467888888877543

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=97.90  E-value=1e-05  Score=78.18  Aligned_cols=60  Identities=17%  Similarity=0.086  Sum_probs=50.0

Q ss_pred             CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecC-CCcEEEEEeCCCcEEECCEEEEcccCccC
Q 013952          203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNA-DGEVKEVKLKDGRTLEADIVVVGVGGRPL  263 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~-~g~~~~v~~~~g~~i~~d~vi~a~G~~p~  263 (433)
                      ...+.+.+.+.+++.|++++++++|++|.... ++++..|.+ +|+++.||.||+++|..|.
T Consensus       241 ~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~-~g~~~~ad~VV~a~~~~~~  301 (453)
T 2bcg_G          241 LGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKT-KLGTFKAPLVIADPTYFPE  301 (453)
T ss_dssp             TTHHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEE-TTEEEECSCEEECGGGCGG
T ss_pred             HHHHHHHHHHHHHHcCCEEECCCEEEEEEEECCCCeEEEEEE-CCeEEECCEEEECCCccch
Confidence            35788899999999999999999999998732 566667777 4778999999999997653

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=97.87  E-value=8.3e-06  Score=80.25  Aligned_cols=41  Identities=20%  Similarity=0.179  Sum_probs=33.8

Q ss_pred             cEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013952          219 IKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG  260 (433)
Q Consensus       219 V~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~  260 (433)
                      .+++++++|++|..+ ++..+.|.+.+|+.+.||.||++++.
T Consensus       215 ~~i~~~~~V~~I~~~-~~~~v~v~~~~g~~~~ad~VI~t~p~  255 (516)
T 1rsg_A          215 NWLKLSCEVKSITRE-PSKNVTVNCEDGTVYNADYVIITVPQ  255 (516)
T ss_dssp             GGEETTCCEEEEEEC-TTSCEEEEETTSCEEEEEEEEECCCH
T ss_pred             CEEEECCEEEEEEEc-CCCeEEEEECCCcEEECCEEEECCCH
Confidence            579999999999873 23346788899988999999999873

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=97.85  E-value=7.1e-05  Score=71.23  Aligned_cols=101  Identities=19%  Similarity=0.213  Sum_probs=74.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCe-EEEEccCCccCCCC---------------------------------------
Q 013952          162 NGKAVVVGGGYIGLELSAALKINNID-VSMVYPEPWCMPRL---------------------------------------  201 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g~~-V~li~~~~~~~~~~---------------------------------------  201 (433)
                      ..+|+|||+|+.|+.+|..|++.|.+ |+++++.+.+.+..                                       
T Consensus         4 ~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~~g   83 (410)
T 3c96_A            4 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQSG   83 (410)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEECTTS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCcccceeEEEEChHHHHHHHHCCChHHHHhhCCCcceEEEEcCCC
Confidence            35899999999999999999999999 99998765421100                                       


Q ss_pred             ---------------------CCHHHHHHHHHHHHh-cC-cEEEcCCeEEEEEecCCCcEEEEEeCC---C--cEEECCE
Q 013952          202 ---------------------FTADIAAFYEGYYAN-KG-IKIIKGTVAVGFTTNADGEVKEVKLKD---G--RTLEADI  253 (433)
Q Consensus       202 ---------------------~~~~~~~~l~~~l~~-~G-V~v~~~~~v~~i~~~~~g~~~~v~~~~---g--~~i~~d~  253 (433)
                                           ....+.+.+.+.+++ .| ++++++++|+++.. +++  ..+.+.+   |  .++.+|.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~-~~~--v~v~~~~~~~g~~~~~~ad~  160 (410)
T 3c96_A           84 ATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEE-RDG--RVLIGARDGHGKPQALGADV  160 (410)
T ss_dssp             CEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEE-ETT--EEEEEEEETTSCEEEEEESE
T ss_pred             CEEeeccCCccccCCCCeeeeeHHHHHHHHHHHHHhhCCCcEEEECCEEEEEec-CCc--cEEEEecCCCCCceEEecCE
Confidence                                 001445566666665 36 68999999999987 455  3455544   6  5799999


Q ss_pred             EEEcccCccChh
Q 013952          254 VVVGVGGRPLIS  265 (433)
Q Consensus       254 vi~a~G~~p~~~  265 (433)
                      ||.|.|......
T Consensus       161 vV~AdG~~S~vR  172 (410)
T 3c96_A          161 LVGADGIHSAVR  172 (410)
T ss_dssp             EEECCCTTCHHH
T ss_pred             EEECCCccchhH
Confidence            999999876553

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=97.84  E-value=3.4e-05  Score=75.28  Aligned_cols=97  Identities=12%  Similarity=0.109  Sum_probs=69.9

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHh
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   83 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (433)
                      ..+++|||||+.|+-.|..|++.|.+   |+++++. ..+.                    +.    ......+.+.+++
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~g~~---Vtlv~~~~~l~~--------------------~d----~~~~~~l~~~l~~  237 (488)
T 3dgz_A          185 PGKTLVVGASYVALECAGFLTGIGLD---TTVMMRSIPLRG--------------------FD----QQMSSLVTEHMES  237 (488)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCSSTT--------------------SC----HHHHHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCc---eEEEEcCccccc--------------------CC----HHHHHHHHHHHHH
Confidence            35799999999999999999999877   9999876 1100                    00    0001334567788


Q ss_pred             CCcEEEeCceEEEEECC-CC--EEEeCC---Cc--EEecceEEEccCCCcccc
Q 013952           84 KGIELILSTEIVRADIA-SK--TLLSAT---GL--IFKYQILVIATGSTVLRL  128 (433)
Q Consensus        84 ~~v~~~~~~~v~~i~~~-~~--~v~~~~---~~--~~~~d~lvlAtG~~~~~~  128 (433)
                      .|++++.++.+..+... +.  .+.+.+   ++  ++.+|.+++|+|..|...
T Consensus       238 ~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~~p~~~  290 (488)
T 3dgz_A          238 HGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPETR  290 (488)
T ss_dssp             TTCEEEETEEEEEEEECTTSCEEEEEEETTTTEEEEEEESEEEECSCEEESCG
T ss_pred             CCCEEEeCCEEEEEEEcCCCcEEEEEEeCCCCeeEEEECCEEEEcccCCcccC
Confidence            99999999888888652 22  344433   44  478999999999887643

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=97.83  E-value=0.00014  Score=70.94  Aligned_cols=102  Identities=23%  Similarity=0.365  Sum_probs=77.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC----------------------CC-----------------
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP----------------------RL-----------------  201 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~----------------------~~-----------------  201 (433)
                      ....|+|||+|+.|+-+|..|++.|.+|+++++.+....                      ..                 
T Consensus        10 ~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~   89 (500)
T 2qa1_A           10 SDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGEVETSTQGHFGGLPID   89 (500)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCSCCBCCEEEETTEEEE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHhccccccccccceecc
Confidence            356899999999999999999999999999987532110                      00                 


Q ss_pred             ---C-----------CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCc---EEECCEEEEcccCccCh
Q 013952          202 ---F-----------TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGR---TLEADIVVVGVGGRPLI  264 (433)
Q Consensus       202 ---~-----------~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~---~i~~d~vi~a~G~~p~~  264 (433)
                         .           ...+.+.+.+.+++.|+++++++++++++.++++  ..+++.++.   ++.+|.||.|.|.+...
T Consensus        90 ~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--v~v~~~~~~g~~~~~a~~vVgADG~~S~V  167 (500)
T 2qa1_A           90 FGVLEGAWQAAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDGAG--VTVEVRGPEGKHTLRAAYLVGCDGGRSSV  167 (500)
T ss_dssp             GGGSTTGGGCEEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEETTE--EEEEEEETTEEEEEEESEEEECCCTTCHH
T ss_pred             cccCCCCCCceeecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcCCe--EEEEEEcCCCCEEEEeCEEEECCCcchHH
Confidence               0           0245667777788889999999999999874443  346666654   79999999999976543

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=97.82  E-value=2.6e-05  Score=76.17  Aligned_cols=99  Identities=19%  Similarity=0.273  Sum_probs=70.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCC-------C--C---CHHHHHHHHHHHHhcCcEEEcCCeEEEE
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR-------L--F---TADIAAFYEGYYANKGIKIIKGTVAVGF  230 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~-------~--~---~~~~~~~l~~~l~~~GV~v~~~~~v~~i  230 (433)
                      .+|+|||+|+.|+.+|..|++. .+|+++++.+.+...       .  +   ..++...+.+.+ +.|++++.++.+.++
T Consensus       109 ~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~~~~~~~~g~~~~~~~~~~~l~~~l-~~~v~~~~~~~v~~i  186 (493)
T 1y56_A          109 VDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMWLKGIKQEGFNKDSRKVVEELVGKL-NENTKIYLETSALGV  186 (493)
T ss_dssp             ESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGGGTCSEETTTTEEHHHHHHHHHHTC-CTTEEEETTEEECCC
T ss_pred             CCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeeeccccccCCCCCCHHHHHHHHHHHH-hcCCEEEcCCEEEEE
Confidence            5799999999999999999999 999999987654110       0  1   223334444444 669999999999888


Q ss_pred             EecCCCcEEEEEeCCCc--EEECCEEEEcccCccCh
Q 013952          231 TTNADGEVKEVKLKDGR--TLEADIVVVGVGGRPLI  264 (433)
Q Consensus       231 ~~~~~g~~~~v~~~~g~--~i~~d~vi~a~G~~p~~  264 (433)
                      ... +.........+++  .+.+|.+|+|+|..|..
T Consensus       187 ~~~-~~~~~~~~~~~~~~~~~~~d~lvlAtGa~~~~  221 (493)
T 1y56_A          187 FDK-GEYFLVPVVRGDKLIEILAKRVVLATGAIDST  221 (493)
T ss_dssp             EEC-SSSEEEEEEETTEEEEEEESCEEECCCEEECC
T ss_pred             EcC-CcEEEEEEecCCeEEEEECCEEEECCCCCccC
Confidence            762 2222222224453  68999999999987754

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=97.82  E-value=1.5e-05  Score=74.28  Aligned_cols=38  Identities=16%  Similarity=0.295  Sum_probs=33.4

Q ss_pred             CCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCC
Q 013952            3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAP   43 (433)
Q Consensus         3 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~   43 (433)
                      ...+||+|||||++||+||+.|++.|++   |+|+|++ ...
T Consensus        42 ~~~~~V~IIGAGiaGL~aA~~L~~~G~~---V~VlE~~~~~v   80 (376)
T 2e1m_A           42 GPPKRILIVGAGIAGLVAGDLLTRAGHD---VTILEANANRV   80 (376)
T ss_dssp             CSCCEEEEECCBHHHHHHHHHHHHTSCE---EEEECSCSSCC
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHCCCc---EEEEecccccc
Confidence            3468999999999999999999999986   9999987 443

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=97.80  E-value=0.00038  Score=61.88  Aligned_cols=34  Identities=21%  Similarity=0.282  Sum_probs=31.3

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc
Q 013952          164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC  197 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~  197 (433)
                      .|+|||+|+.|+-+|..|++.|.+|+++++.+.+
T Consensus         4 dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~   37 (336)
T 3kkj_A            4 PIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGS   37 (336)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence            6999999999999999999999999999987643

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=97.80  E-value=2e-05  Score=74.20  Aligned_cols=34  Identities=29%  Similarity=0.657  Sum_probs=31.8

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ..+||+|||||++|+++|.+|++.|.+   |+|+|+.
T Consensus        28 ~~~dv~IIGaG~aGl~aA~~l~~~g~~---v~v~E~~   61 (397)
T 3hdq_A           28 KGFDYLIVGAGFAGSVLAERLASSGQR---VLIVDRR   61 (397)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSS
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCc---eEEEecc
Confidence            468999999999999999999999987   9999998

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=97.80  E-value=1.7e-05  Score=77.47  Aligned_cols=36  Identities=31%  Similarity=0.486  Sum_probs=32.8

Q ss_pred             CCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         2 m~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      +++.+||+|||||++||+||+.|++.|++   |+|+|+.
T Consensus         8 ~~~~~~v~IIGaG~aGl~aA~~L~~~g~~---v~v~E~~   43 (489)
T 2jae_A            8 VKGSHSVVVLGGGPAGLCSAFELQKAGYK---VTVLEAR   43 (489)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSS
T ss_pred             ccCCCCEEEECCCHHHHHHHHHHHHCCCC---EEEEecc
Confidence            34568999999999999999999999986   9999998

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.78  E-value=7.6e-06  Score=79.05  Aligned_cols=91  Identities=13%  Similarity=0.120  Sum_probs=69.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCC--CeEEEEccCCccC--------CCC-CCHHHHHHHHHHHHhcCcEEEcCCeEEE
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINN--IDVSMVYPEPWCM--------PRL-FTADIAAFYEGYYANKGIKIIKGTVAVG  229 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g--~~V~li~~~~~~~--------~~~-~~~~~~~~l~~~l~~~GV~v~~~~~v~~  229 (433)
                      .+++++|||+|+.|+.+|..|.+.|  .+|+++++.+.+.        +.. ...++...+.+.+++.||+++.++.+. 
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~-   83 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVG-   83 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCBT-
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceeecccCCCCccHHHHHHHHHHHHHhCCcEEEeeeEEe-
Confidence            3679999999999999999999988  9999999876553        211 234567777888889999999987652 


Q ss_pred             EEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013952          230 FTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP  262 (433)
Q Consensus       230 i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p  262 (433)
                            .   .|.+.+. .+.+|.||+|||..|
T Consensus        84 ------~---~V~~~~~-~~~~d~lVlAtGs~~  106 (460)
T 1cjc_A           84 ------R---DVTVQEL-QDAYHAVVLSYGAED  106 (460)
T ss_dssp             ------T---TBCHHHH-HHHSSEEEECCCCCE
T ss_pred             ------e---EEEeccc-eEEcCEEEEecCcCC
Confidence                  1   1223332 468999999999875

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=97.77  E-value=4.6e-05  Score=72.45  Aligned_cols=54  Identities=17%  Similarity=0.217  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHhcCcEEEcCCeEE---------EEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013952          206 IAAFYEGYYANKGIKIIKGTVAV---------GFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP  262 (433)
Q Consensus       206 ~~~~l~~~l~~~GV~v~~~~~v~---------~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p  262 (433)
                      +...+.+.+++.|++++++++|+         ++.. +++.+ .|.+.+| ++.||.||+|+|...
T Consensus       174 l~~~L~~~~~~~Gv~i~~~~~v~~~~g~~~~~~i~~-~~~~v-~v~~~~g-~i~a~~VV~A~G~~s  236 (405)
T 3c4n_A          174 LALLAAQQAIGQGAGLLLNTRAELVPGGVRLHRLTV-TNTHQ-IVVHETR-QIRAGVIIVAAGAAG  236 (405)
T ss_dssp             HHHHHHHHHHTTTCEEECSCEEEEETTEEEEECBCC---------CBCCE-EEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHCCCEEEcCCEEEeccccccccceEe-eCCeE-EEEECCc-EEECCEEEECCCccH
Confidence            55667778888999999999999         8765 23333 6766666 799999999999764

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=97.77  E-value=6e-05  Score=79.53  Aligned_cols=101  Identities=14%  Similarity=0.093  Sum_probs=72.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCC-------CC----CHHHHHHHHHHHHhc-CcEEEcCCeEEE
Q 013952          162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR-------LF----TADIAAFYEGYYANK-GIKIIKGTVAVG  229 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~-------~~----~~~~~~~l~~~l~~~-GV~v~~~~~v~~  229 (433)
                      ..+++|||+|+.|+.+|..+++.|.+|+++++.+.+...       .+    ..++...+.+.+.+. +|+++.++.|.+
T Consensus       128 ~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~~~~k~~i~~~~~~~~~~~~~~~l~~~~~v~~~~~~~V~~  207 (965)
T 2gag_A          128 HTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLLDTAGEQIDGMDSSAWIEQVTSELAEAEETTHLQRTTVFG  207 (965)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGGGSSCCEETTEEHHHHHHHHHHHHHHSTTEEEESSEEEEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceeccCCccccCCCCHHHHHHHHHHHHhhcCCcEEEeCCEEEe
Confidence            358999999999999999999999999999986543210       01    234555555666664 999999999988


Q ss_pred             EEecCCCcEEEEEe---------------CCCcEEECCEEEEcccCccCh
Q 013952          230 FTTNADGEVKEVKL---------------KDGRTLEADIVVVGVGGRPLI  264 (433)
Q Consensus       230 i~~~~~g~~~~v~~---------------~~g~~i~~d~vi~a~G~~p~~  264 (433)
                      +..  ++....+..               .++.++.+|.+|+|||.+|..
T Consensus       208 i~~--~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs~p~~  255 (965)
T 2gag_A          208 SYD--ANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGAHERP  255 (965)
T ss_dssp             EET--TTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCEEECC
T ss_pred             eec--CCceeeeEeecccccccccccCCCCceEEEECCEEEECCCCccCC
Confidence            864  333222221               112368999999999987754

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=97.75  E-value=1.5e-05  Score=76.45  Aligned_cols=33  Identities=12%  Similarity=0.189  Sum_probs=30.8

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ++||+|||||++|+++|..|++.|++   |+|+|+.
T Consensus        22 ~~~ViIVGaGpaGl~~A~~La~~G~~---V~viE~~   54 (430)
T 3ihm_A           22 KKRIGIVGAGTAGLHLGLFLRQHDVD---VTVYTDR   54 (430)
T ss_dssp             -CEEEEECCHHHHHHHHHHHHHTTCE---EEEEESC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCe---EEEEcCC
Confidence            37999999999999999999999987   9999998

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=97.75  E-value=0.00022  Score=69.69  Aligned_cols=57  Identities=16%  Similarity=0.131  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEECCEEEEcccCccC
Q 013952          205 DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGGRPL  263 (433)
Q Consensus       205 ~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~---~~g~--~i~~d~vi~a~G~~p~  263 (433)
                      .+...+.+.+++.|++++++++|+++..  ++.+..|.+   .+|+  ++.+|.||.|+|....
T Consensus       150 ~l~~~l~~~a~~~Gv~i~~~~~V~~l~~--~~~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s~  211 (501)
T 2qcu_A          150 RLVLANAQMVVRKGGEVLTRTRATSARR--ENGLWIVEAEDIDTGKKYSWQARGLVNATGPWVK  211 (501)
T ss_dssp             HHHHHHHHHHHHTTCEEECSEEEEEEEE--ETTEEEEEEEETTTCCEEEEEESCEEECCGGGHH
T ss_pred             HHHHHHHHHHHHcCCEEEcCcEEEEEEE--eCCEEEEEEEECCCCCEEEEECCEEEECCChhHH
Confidence            3555677777889999999999999987  335667777   3565  7999999999997643

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=97.72  E-value=8.3e-05  Score=73.06  Aligned_cols=97  Identities=16%  Similarity=0.207  Sum_probs=66.9

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHh
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   83 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (433)
                      ..+++|||||+.|+-.|..|++.|.+   |+++++. ..+.                    +.    ......+.+.+++
T Consensus       210 ~~~vvVIGgG~ig~E~A~~l~~~G~~---Vtlv~~~~~l~~--------------------~d----~~~~~~~~~~l~~  262 (519)
T 3qfa_A          210 PGKTLVVGASYVALECAGFLAGIGLD---VTVMVRSILLRG--------------------FD----QDMANKIGEHMEE  262 (519)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCSSTT--------------------SC----HHHHHHHHHHHHH
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCe---EEEEeccccccc--------------------CC----HHHHHHHHHHHHH
Confidence            35799999999999999999999876   9999876 1110                    00    0001234566788


Q ss_pred             CCcEEEeCceEEEEECCC----C--EEE--eCCC-c--EEecceEEEccCCCcccc
Q 013952           84 KGIELILSTEIVRADIAS----K--TLL--SATG-L--IFKYQILVIATGSTVLRL  128 (433)
Q Consensus        84 ~~v~~~~~~~v~~i~~~~----~--~v~--~~~~-~--~~~~d~lvlAtG~~~~~~  128 (433)
                      .|++++.++.+..+....    .  .+.  ..++ +  ++.+|.+++|+|..|...
T Consensus       263 ~GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~~p~~~  318 (519)
T 3qfa_A          263 HGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTR  318 (519)
T ss_dssp             TTCEEEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCEEESCS
T ss_pred             CCCEEEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCCcccCC
Confidence            999999997766664321    2  232  2344 2  568999999999988653

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=97.72  E-value=2.8e-05  Score=75.70  Aligned_cols=34  Identities=24%  Similarity=0.235  Sum_probs=31.3

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcC-CCCCcEEEEcCC
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQG-VKPGELAIISKE   40 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g-~~~~~V~lie~~   40 (433)
                      +.+||+|||||++||++|.+|++.| .+   |+|+|++
T Consensus         8 ~~~~v~iiG~G~~Gl~~A~~l~~~g~~~---v~v~E~~   42 (484)
T 4dsg_A            8 LTPKIVIIGAGPTGLGAAVRLTELGYKN---WHLYECN   42 (484)
T ss_dssp             CSCCEEEECCSHHHHHHHHHHHHTTCCS---EEEEESS
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCC---EEEEeCC
Confidence            4589999999999999999999998 55   9999998

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=97.71  E-value=1.7e-05  Score=84.24  Aligned_cols=94  Identities=19%  Similarity=0.312  Sum_probs=71.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccCCccC-------CC-CCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013952          162 NGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWCM-------PR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT  232 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g~-~V~li~~~~~~~-------~~-~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~  232 (433)
                      .++|+|||+|+.|+.+|..|++.|. +|+++++.+.+.       +. ..+.++.++..+.+++.||+++.++.+..   
T Consensus       187 ~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~~~~ip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~---  263 (1025)
T 1gte_A          187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSE---  263 (1025)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTTTCEEEESCCBST---
T ss_pred             CCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCccccccCCcccCCHHHHHHHHHHHHHCCcEEEcccEecc---
Confidence            4689999999999999999999998 799999875432       11 13567777777889999999999987631   


Q ss_pred             cCCCcEEEEEeCCCcEEECCEEEEcccC-ccCh
Q 013952          233 NADGEVKEVKLKDGRTLEADIVVVGVGG-RPLI  264 (433)
Q Consensus       233 ~~~g~~~~v~~~~g~~i~~d~vi~a~G~-~p~~  264 (433)
                         .   .+.+.++.++.+|.||+|||. +|..
T Consensus       264 ---~---~v~~~~~~~~~~d~vvlAtGa~~p~~  290 (1025)
T 1gte_A          264 ---N---EITLNTLKEEGYKAAFIGIGLPEPKT  290 (1025)
T ss_dssp             ---T---SBCHHHHHHTTCCEEEECCCCCEECC
T ss_pred             ---c---eEEhhhcCccCCCEEEEecCCCCCCC
Confidence               1   133344445789999999997 5754

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=97.69  E-value=2.7e-05  Score=75.76  Aligned_cols=39  Identities=18%  Similarity=0.159  Sum_probs=32.8

Q ss_pred             cEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013952          219 IKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG  260 (433)
Q Consensus       219 V~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~  260 (433)
                      ++++++++|++|+.++++  ..|++.+| ++.+|.||+|++.
T Consensus       249 ~~i~~~~~V~~i~~~~~~--~~v~~~~g-~~~ad~vV~a~p~  287 (475)
T 3lov_A          249 SEIRLETPLLAISREDGR--YRLKTDHG-PEYADYVLLTIPH  287 (475)
T ss_dssp             CEEESSCCCCEEEEETTE--EEEECTTC-CEEESEEEECSCH
T ss_pred             CEEEcCCeeeEEEEeCCE--EEEEECCC-eEECCEEEECCCH
Confidence            799999999999873333  56888888 7999999999985

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=97.68  E-value=2.2e-05  Score=73.13  Aligned_cols=46  Identities=15%  Similarity=0.233  Sum_probs=36.2

Q ss_pred             CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013952          203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP  262 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p  262 (433)
                      +..+...+.+.+++.|++++. ++|++++.  ++           .+.+|.||+|+|...
T Consensus       141 p~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~--~~-----------~~~a~~VV~A~G~~s  186 (351)
T 3g3e_A          141 GKNYLQWLTERLTERGVKFFQ-RKVESFEE--VA-----------REGADVIVNCTGVWA  186 (351)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEE-CCCCCHHH--HH-----------HTTCSEEEECCGGGG
T ss_pred             HHHHHHHHHHHHHHCCCEEEE-EEeCCHHH--hh-----------cCCCCEEEECCCcCh
Confidence            567888899999999999998 78877643  11           257999999999654

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=97.68  E-value=7.4e-05  Score=76.11  Aligned_cols=97  Identities=13%  Similarity=0.091  Sum_probs=70.9

Q ss_pred             CeEEEEC--CCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHh
Q 013952            6 FKYVILG--GGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   83 (433)
Q Consensus         6 ~dvvIIG--gG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (433)
                      .+|+|||  +|..|+.+|..|++.|.+   |+++++.....      .....    .           .....+.+.+++
T Consensus       524 ~~VvViG~ggG~~g~e~A~~L~~~g~~---Vtlv~~~~~l~------~~~~~----~-----------~~~~~l~~~l~~  579 (690)
T 3k30_A          524 KKVVVYDDDHYYLGGVVAELLAQKGYE---VSIVTPGAQVS------SWTNN----T-----------FEVNRIQRRLIE  579 (690)
T ss_dssp             SEEEEEECSCSSHHHHHHHHHHHTTCE---EEEEESSSSTT------GGGGG----G-----------TCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCccHHHHHHHHHhCCCe---eEEEecccccc------ccccc----c-----------hhHHHHHHHHHH
Confidence            5799999  999999999999999876   99998871110      00000    0           001234667788


Q ss_pred             CCcEEEeCceEEEEECCCCEEEe---CCCcEEecceEEEccCCCcc
Q 013952           84 KGIELILSTEIVRADIASKTLLS---ATGLIFKYQILVIATGSTVL  126 (433)
Q Consensus        84 ~~v~~~~~~~v~~i~~~~~~v~~---~~~~~~~~d~lvlAtG~~~~  126 (433)
                      .|++++.++.|..++.++..+..   .+++++.+|.+|+|+|..|.
T Consensus       580 ~GV~i~~~~~V~~i~~~~~~v~~~~~~~~~~i~aD~VV~A~G~~p~  625 (690)
T 3k30_A          580 NGVARVTDHAVVAVGAGGVTVRDTYASIERELECDAVVMVTARLPR  625 (690)
T ss_dssp             TTCEEEESEEEEEEETTEEEEEETTTCCEEEEECSEEEEESCEEEC
T ss_pred             CCCEEEcCcEEEEEECCeEEEEEccCCeEEEEECCEEEECCCCCCC
Confidence            99999999999999876545543   24457999999999998775

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=97.67  E-value=0.00026  Score=68.52  Aligned_cols=99  Identities=22%  Similarity=0.320  Sum_probs=71.4

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC-------------CCC-----------------------------
Q 013952          164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------------PRL-----------------------------  201 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~-------------~~~-----------------------------  201 (433)
                      .|+|||+|..|+.+|..|++.|.+|+++++...-.             ...                             
T Consensus         1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~~~~g~s~~a~Ggi~~~~~~~d~~~~~~~d~l~~g~~~~d~~~v~~~~~~   80 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKRIDGGSTPIAKGGVAASVGSDDSPELHAQDTIRVGDGLCDVKTVNYVTSE   80 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSTTCSSGGGCCSCEECCCSTTCCHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCchHHHHhCCeEEeCCCCCCHHHHHHHHHHhcCCcCCHHHHHHHHHH
Confidence            37999999999999999999999999998751000             000                             


Q ss_pred             --------------C----------------------CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC-
Q 013952          202 --------------F----------------------TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK-  244 (433)
Q Consensus       202 --------------~----------------------~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~-  244 (433)
                                    +                      ...+.+.+.+.+++.||+++.++.+ ++.. +++++..+... 
T Consensus        81 ~~~~i~~l~~~Gv~~~~~~~~~~g~~~~r~~~~~d~~g~~l~~~L~~~~~~~gv~i~~~~~v-~l~~-~~~~v~Gv~v~~  158 (472)
T 2e5v_A           81 AKNVIETFESWGFEFEEDLRLEGGHTKRRVLHRTDETGREIFNFLLKLAREEGIPIIEDRLV-EIRV-KDGKVTGFVTEK  158 (472)
T ss_dssp             HHHHHHHHHHTTCCCCSSCBCCTTCSSCCEECSSSCHHHHHHHHHHHHHHHTTCCEECCCEE-EEEE-ETTEEEEEEETT
T ss_pred             HHHHHHHHHHcCCCCCcccccccCcCcCcEEEeCCCCHHHHHHHHHHHHHhCCCEEEECcEE-EEEE-eCCEEEEEEEEe
Confidence                          0                      0134455666667789999999999 9876 35666666553 


Q ss_pred             CCcEEECCEEEEcccCccCh
Q 013952          245 DGRTLEADIVVVGVGGRPLI  264 (433)
Q Consensus       245 ~g~~i~~d~vi~a~G~~p~~  264 (433)
                      ++.++.+|.||+|+|..+..
T Consensus       159 ~~g~~~a~~VVlAtGg~~~~  178 (472)
T 2e5v_A          159 RGLVEDVDKLVLATGGYSYL  178 (472)
T ss_dssp             TEEECCCSEEEECCCCCGGG
T ss_pred             CCCeEEeeeEEECCCCCccc
Confidence            22357899999999976643

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=97.64  E-value=3.1e-05  Score=75.90  Aligned_cols=34  Identities=24%  Similarity=0.420  Sum_probs=31.4

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      +.+||+|||||++||+||..|++.|++   |+|+|++
T Consensus        12 ~~~~v~iiG~G~~Gl~aA~~l~~~g~~---v~v~E~~   45 (504)
T 1sez_A           12 SAKRVAVIGAGVSGLAAAYKLKIHGLN---VTVFEAE   45 (504)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHTTSCE---EEEECSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCc---EEEEEeC
Confidence            358999999999999999999999987   9999999

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=97.63  E-value=1e-05  Score=78.12  Aligned_cols=90  Identities=19%  Similarity=0.196  Sum_probs=68.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHh-C------CCeEEEEccCCccC--------CC-CCCHHHHHHHHHHHHhcCcEEEcC
Q 013952          161 KNGKAVVVGGGYIGLELSAALKI-N------NIDVSMVYPEPWCM--------PR-LFTADIAAFYEGYYANKGIKIIKG  224 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~-~------g~~V~li~~~~~~~--------~~-~~~~~~~~~l~~~l~~~GV~v~~~  224 (433)
                      ++++|+|||+|+.|+.+|..|.+ .      +.+|+++++.+.+.        +. ....++...+.+.+++.||+++.+
T Consensus         2 ~~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~~gv~p~~~~~~~~~~~~~~~~~~~~v~~~~~   81 (456)
T 1lqt_A            2 RPYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGN   81 (456)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEES
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccccccCCCCCCHHHHHHHHHHHHhcCCCEEEee
Confidence            35689999999999999999999 7      89999999876543        11 123456777888888899999988


Q ss_pred             CeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013952          225 TVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR  261 (433)
Q Consensus       225 ~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~  261 (433)
                      ..+       +.   .|.+.++ .+.+|.||+|||..
T Consensus        82 v~v-------~~---~v~~~~~-~~~~d~lViAtG~~  107 (456)
T 1lqt_A           82 VVV-------GE---HVQPGEL-SERYDAVIYAVGAQ  107 (456)
T ss_dssp             CCB-------TT---TBCHHHH-HHHSSEEEECCCCC
T ss_pred             EEE-------CC---EEEECCC-eEeCCEEEEeeCCC
Confidence            543       11   1334444 47899999999986

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=97.62  E-value=8.2e-05  Score=75.53  Aligned_cols=87  Identities=16%  Similarity=0.197  Sum_probs=66.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC---------CCC-CCHHHHHHHHHHHHhcCcEEEcCCeEEEEE
Q 013952          162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM---------PRL-FTADIAAFYEGYYANKGIKIIKGTVAVGFT  231 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~---------~~~-~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~  231 (433)
                      .++++|||+|+.|+.+|..|++.|.+|+++++.+.+.         +.. ...++...+.+.+++.||+++.++.+..  
T Consensus       373 ~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~--  450 (671)
T 1ps9_A          373 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVTA--  450 (671)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCCCS--
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCeeeccccCCCHHHHHHHHHHHHHHHHHcCCEEEeCcEecH--
Confidence            4689999999999999999999999999999876431         110 0124455677778889999998876531  


Q ss_pred             ecCCCcEEEEEeCCCcEE-ECCEEEEcccCccChh
Q 013952          232 TNADGEVKEVKLKDGRTL-EADIVVVGVGGRPLIS  265 (433)
Q Consensus       232 ~~~~g~~~~v~~~~g~~i-~~d~vi~a~G~~p~~~  265 (433)
                                     ..+ .+|.+|+|||.+|+..
T Consensus       451 ---------------~~~~~~d~lviAtG~~p~~~  470 (671)
T 1ps9_A          451 ---------------DQLQAFDETILASGIVPRTP  470 (671)
T ss_dssp             ---------------SSSCCSSEEEECCCEEECCC
T ss_pred             ---------------HHhhcCCEEEEccCCCcCCC
Confidence                           013 7999999999887653

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.61  E-value=0.00014  Score=72.85  Aligned_cols=97  Identities=13%  Similarity=0.184  Sum_probs=66.7

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      ..+++|||||+.|+-+|..|++.|.+   |+++++. ...     .             .+..    .....+.+.+++.
T Consensus       286 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~-~~l-----~-------------~~d~----~~~~~~~~~l~~~  339 (598)
T 2x8g_A          286 PGKTLVIGASYVALECAGFLASLGGD---VTVMVRS-ILL-----R-------------GFDQ----QMAEKVGDYMENH  339 (598)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCC---EEEEESS-CSS-----T-------------TSCH----HHHHHHHHHHHHT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCE---EEEEECC-cCc-----C-------------cCCH----HHHHHHHHHHHhC
Confidence            35799999999999999999999976   9999876 110     0             0000    0012345567788


Q ss_pred             CcEEEeCceEEEEEC------CC---CE--EE--eCCCcEEe--cceEEEccCCCccc
Q 013952           85 GIELILSTEIVRADI------AS---KT--LL--SATGLIFK--YQILVIATGSTVLR  127 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~------~~---~~--v~--~~~~~~~~--~d~lvlAtG~~~~~  127 (433)
                      |++++.++.+..+..      +.   ..  +.  ..+++++.  +|.+++|+|.+|..
T Consensus       340 gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~D~vi~a~G~~p~~  397 (598)
T 2x8g_A          340 GVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQL  397 (598)
T ss_dssp             TCEEEETEEEEEEEEEECCBTTTTBCCEEEEEEEETTSCEEEEEESEEEECSCEEECG
T ss_pred             CCEEEECCeEEEEEeccccccccCCCceEEEEEEeCCCcEEeccCCEEEEEeCCcccc
Confidence            999999877766632      11   22  22  34666555  99999999988864

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=97.58  E-value=4.4e-05  Score=71.90  Aligned_cols=32  Identities=19%  Similarity=0.322  Sum_probs=30.1

Q ss_pred             CeEEEECCCHHHHHHHHHHHHc--CCCCCcEEEEcCC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQ--GVKPGELAIISKE   40 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~--g~~~~~V~lie~~   40 (433)
                      +||+|||||++|+++|..|++.  |.+   |+|+|+.
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~---V~v~E~~   34 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWA---IDIVEKN   34 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSE---EEEECSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCC---EEEEECC
Confidence            3899999999999999999999  887   9999998

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=97.56  E-value=6.8e-05  Score=71.89  Aligned_cols=59  Identities=14%  Similarity=0.124  Sum_probs=49.1

Q ss_pred             CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccC
Q 013952          203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL  263 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~  263 (433)
                      ...+.+.+.+.+++.|++++++++|++|.. .++++..+.. +|+++.||.||+++|..+.
T Consensus       233 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~-~~~~v~~v~~-~g~~~~ad~VV~a~~~~~~  291 (433)
T 1d5t_A          233 LGELPQGFARLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKS-EGEVARCKQLICDPSYVPD  291 (433)
T ss_dssp             TTHHHHHHHHHHHHHTCCCBCSCCCCEEEE-ETTEEEEEEE-TTEEEECSEEEECGGGCGG
T ss_pred             HHHHHHHHHHHHHHcCCEEECCCEEEEEEE-eCCEEEEEEE-CCeEEECCEEEECCCCCcc
Confidence            457888899999999999999999999987 4566655664 6778999999999998763

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=97.55  E-value=5.4e-05  Score=73.64  Aligned_cols=53  Identities=13%  Similarity=0.124  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCcEEECCEEEEcccCc
Q 013952          204 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGRTLEADIVVVGVGGR  261 (433)
Q Consensus       204 ~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~---~~g~~i~~d~vi~a~G~~  261 (433)
                      ..+.+.+.+.+   |++++++++|++|..++++  ..|.+   .+|+++.||.||+|++..
T Consensus       238 ~~l~~~l~~~l---g~~i~~~~~V~~i~~~~~~--~~v~~~~~~~g~~~~ad~vV~a~~~~  293 (478)
T 2ivd_A          238 QVLIDALAASL---GDAAHVGARVEGLAREDGG--WRLIIEEHGRRAELSVAQVVLAAPAH  293 (478)
T ss_dssp             HHHHHHHHHHH---GGGEESSEEEEEEECC--C--CEEEEEETTEEEEEECSEEEECSCHH
T ss_pred             HHHHHHHHHHh---hhhEEcCCEEEEEEecCCe--EEEEEeecCCCceEEcCEEEECCCHH
Confidence            45555555544   6799999999999874333  56777   677789999999999853

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=97.53  E-value=5e-05  Score=76.43  Aligned_cols=33  Identities=27%  Similarity=0.416  Sum_probs=31.0

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHc------CCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQ------GVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~------g~~~~~V~lie~~   40 (433)
                      ++||||||||+|||+||++|++.      |.+   |+|||+.
T Consensus        22 ~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~---V~vleK~   60 (662)
T 3gyx_A           22 SVDLLMVGGGMGNCGAAFEAVRWADKYAPEAK---ILLVDKA   60 (662)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHHCTTCC---EEEECSS
T ss_pred             EcCEEEECCCHHHHHHHHHHHhhccccCCCCc---EEEEEec
Confidence            58999999999999999999997      887   9999997

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=97.53  E-value=6.6e-05  Score=73.42  Aligned_cols=34  Identities=24%  Similarity=0.352  Sum_probs=31.8

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ..+||+|||||++||+||..|++.|.+   |+|+|++
T Consensus        32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~~---v~vlE~~   65 (498)
T 2iid_A           32 NPKHVVIVGAGMAGLSAAYVLAGAGHQ---VTVLEAS   65 (498)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCE---EEEECSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCe---EEEEECC
Confidence            468999999999999999999999987   9999998

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=97.52  E-value=8.3e-05  Score=68.71  Aligned_cols=32  Identities=19%  Similarity=0.353  Sum_probs=30.5

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      +||+|||||+||+.||..|++.|.+   |+|+|+.
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~---V~liE~~   33 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVP---VRLFEMR   33 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCC---EEEECCT
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCc---EEEEecc
Confidence            5999999999999999999999988   9999987

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=97.50  E-value=6.7e-05  Score=70.20  Aligned_cols=32  Identities=31%  Similarity=0.607  Sum_probs=30.5

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      +||+|||||++|+++|.+|++.|.+   |+|+|++
T Consensus         2 ~~v~iiG~G~~Gl~~A~~l~~~g~~---v~v~E~~   33 (367)
T 1i8t_A            2 YDYIIVGSGLFGAVCANELKKLNKK---VLVIEKR   33 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCC---EEEECSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCc---EEEEecC
Confidence            6999999999999999999999987   9999998

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=97.48  E-value=7.6e-05  Score=70.30  Aligned_cols=33  Identities=33%  Similarity=0.562  Sum_probs=31.0

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ++||+|||||++|+++|..|++.|++   |+|+|++
T Consensus         3 ~~~v~iiG~G~~Gl~~A~~l~~~g~~---v~v~E~~   35 (384)
T 2bi7_A            3 SKKILIVGAGFSGAVIGRQLAEKGHQ---VHIIDQR   35 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCE---EEEEESS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCc---EEEEEec
Confidence            58999999999999999999998876   9999998

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=97.40  E-value=0.001  Score=66.36  Aligned_cols=97  Identities=19%  Similarity=0.224  Sum_probs=71.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCC--CeEEEEccCCccCC------------------------------C-CC-------
Q 013952          163 GKAVVVGGGYIGLELSAALKINN--IDVSMVYPEPWCMP------------------------------R-LF-------  202 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g--~~V~li~~~~~~~~------------------------------~-~~-------  202 (433)
                      -.|+|||+|..|+-+|..|++.|  .+|+++++.+....                              . ..       
T Consensus         6 ~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~~~~~s~~a~GGi~~~~~~~ds~~~~~~d~~~~g~~~~d~~~v~~   85 (602)
T 1kf6_A            6 ADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQDVVDY   85 (602)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSGGGGCCSCEECCCSTTCCHHHHHHHHHHHTTTCSCHHHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCCCCChHHHhcCccEEeCCCCCCHHHHHHHHHHhcCCCCCHHHHHH
Confidence            37999999999999999999999  99999987532100                              0 00       


Q ss_pred             -----------------------------------------------CHHHHHHHHHHHHhcC-cEEEcCCeEEEEEecC
Q 013952          203 -----------------------------------------------TADIAAFYEGYYANKG-IKIIKGTVAVGFTTNA  234 (433)
Q Consensus       203 -----------------------------------------------~~~~~~~l~~~l~~~G-V~v~~~~~v~~i~~~~  234 (433)
                                                                     ...+...+.+.+++.| |++++++.+.++.. +
T Consensus        86 ~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~d~tg~~l~~~L~~~~~~~gnv~i~~~~~v~~l~~-~  164 (602)
T 1kf6_A           86 FVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILV-D  164 (602)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCBCTTSSBCCBCCTTCSSCCEECSTTCHHHHHHHHHHHHHTTCTTEEEEETEEEEEEEE-E
T ss_pred             HHHHHHHHHHHHHHcCCCcccCCCCcccccccCCccCCeEEEcCCCCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEE-e
Confidence                                                           0133444555566678 99999999999986 3


Q ss_pred             CCcEEEEEe---CCCc--EEECCEEEEcccC
Q 013952          235 DGEVKEVKL---KDGR--TLEADIVVVGVGG  260 (433)
Q Consensus       235 ~g~~~~v~~---~~g~--~i~~d~vi~a~G~  260 (433)
                      ++++.++..   .+|+  .+.++.||+|+|.
T Consensus       165 ~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg  195 (602)
T 1kf6_A          165 DGHVRGLVAMNMMEGTLVQIRANAVVMATGG  195 (602)
T ss_dssp             TTEEEEEEEEETTTTEEEEEECSCEEECCCC
T ss_pred             CCEEEEEEEEEcCCCcEEEEEcCeEEECCCC
Confidence            566655543   5675  6899999999995

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=97.35  E-value=0.0011  Score=66.84  Aligned_cols=100  Identities=23%  Similarity=0.227  Sum_probs=73.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHh-CCCeEEEEccCCccCC------------------------------------------
Q 013952          163 GKAVVVGGGYIGLELSAALKI-NNIDVSMVYPEPWCMP------------------------------------------  199 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~-~g~~V~li~~~~~~~~------------------------------------------  199 (433)
                      ..|+|||+|+.|+.+|..|++ .|.+|+++++.+....                                          
T Consensus        33 ~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~~~g~a~~l~~~t~e~l~~lGl~~~~~~~~~~~~~~~~~~~~~~  112 (639)
T 2dkh_A           33 VDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMELGQADGIACRTMEMFEAFEFADSILKEACWINDVTFWKPDPG  112 (639)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCCSSCSCCEECHHHHHHHHHTTCHHHHHHHSEEECEEEEEEECTT
T ss_pred             CcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCcHHHHHHhcccccceEEECCCCC
Confidence            379999999999999999999 9999999986532100                                          


Q ss_pred             --C----------------C-----CC-HHHHHHHHHHHHhcCc--EEEcCCeEEEEEecCC--CcEEEEEeC------C
Q 013952          200 --R----------------L-----FT-ADIAAFYEGYYANKGI--KIIKGTVAVGFTTNAD--GEVKEVKLK------D  245 (433)
Q Consensus       200 --~----------------~-----~~-~~~~~~l~~~l~~~GV--~v~~~~~v~~i~~~~~--g~~~~v~~~------~  245 (433)
                        .                .     .+ ..+.+.+.+.+++.|+  ++++++++++++.+++  +....+++.      +
T Consensus       113 ~~g~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~~~~~  192 (639)
T 2dkh_A          113 QPGRIARHGRVQDTEDGLSEFPHVILNQARVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAAHA  192 (639)
T ss_dssp             STTCEEEEEEEESSCTTSCSSCEEECCHHHHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECSGGGT
T ss_pred             CCcceEeecccCcccCCCCCCceEeeCHHHHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEEeccccCC
Confidence              0                0     01 2566677788888877  9999999999987442  222445543      4


Q ss_pred             C--cEEECCEEEEcccCcc
Q 013952          246 G--RTLEADIVVVGVGGRP  262 (433)
Q Consensus       246 g--~~i~~d~vi~a~G~~p  262 (433)
                      |  +++.+|.||.|.|.+.
T Consensus       193 G~~~~i~a~~vVgADG~~S  211 (639)
T 2dkh_A          193 GQIETVQARYVVGCDGARS  211 (639)
T ss_dssp             TCEEEEEEEEEEECCCTTC
T ss_pred             CCeEEEEeCEEEECCCcch
Confidence            5  5799999999999643

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=97.30  E-value=0.00034  Score=71.61  Aligned_cols=98  Identities=17%  Similarity=0.100  Sum_probs=68.6

Q ss_pred             cCeEEEEC--CCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHH
Q 013952            5 SFKYVILG--GGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK   82 (433)
Q Consensus         5 ~~dvvIIG--gG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (433)
                      ..+|+|||  ||..|+-+|..|++.|.+   |+++++.. ..     ....+..                ......+.++
T Consensus       528 gk~VvVIG~GgG~~g~e~A~~l~~~G~~---Vtlv~~~~-l~-----~~~~~~~----------------~~~~~~~~l~  582 (729)
T 1o94_A          528 GKRVVILNADTYFMAPSLAEKLATAGHE---VTIVSGVH-LA-----NYMHFTL----------------EYPNMMRRLH  582 (729)
T ss_dssp             CSEEEEEECCCSSHHHHHHHHHHHTTCE---EEEEESSC-TT-----HHHHHTT----------------CHHHHHHHHH
T ss_pred             CCeEEEEcCCCCchHHHHHHHHHHcCCE---EEEEeccc-cc-----ccccccc----------------cHHHHHHHHH
Confidence            35899999  999999999999999876   99999882 10     0000000                0123456677


Q ss_pred             hCCcEEEeCceEEEEECCCCEEEe--CCC-cE------------------EecceEEEccCCCccc
Q 013952           83 EKGIELILSTEIVRADIASKTLLS--ATG-LI------------------FKYQILVIATGSTVLR  127 (433)
Q Consensus        83 ~~~v~~~~~~~v~~i~~~~~~v~~--~~~-~~------------------~~~d~lvlAtG~~~~~  127 (433)
                      +.||+++.++.+..++.+...+..  .++ ++                  +.+|.||+|+|..|..
T Consensus       583 ~~GV~i~~~~~v~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aD~Vv~a~G~~p~~  648 (729)
T 1o94_A          583 ELHVEELGDHFCSRIEPGRMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSEC  648 (729)
T ss_dssp             HTTCEEECSEEEEEEETTEEEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCEEECC
T ss_pred             hCCCEEEcCcEEEEEECCeEEEEEecCCceEEecccccccccccCCcceeeeCCEEEECCCCCCCh
Confidence            899999999999999865433332  222 22                  8999999999987753

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=97.28  E-value=0.00014  Score=68.48  Aligned_cols=87  Identities=18%  Similarity=0.162  Sum_probs=67.8

Q ss_pred             cEEEECCCHHHHHHHHHHHhC--CCeEEEEccCCcc----------------------C-CC------------------
Q 013952          164 KAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPWC----------------------M-PR------------------  200 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~--g~~V~li~~~~~~----------------------~-~~------------------  200 (433)
                      +|+|||+|+.|+.+|..|++.  |.+|+++++.+.+                      . ..                  
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g   81 (381)
T 3c4a_A            2 KILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYLDAPERLNPQFLEDFKLVHHN   81 (381)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTCCCCSEEEEESCTTTCTTCGGGGSSCGGGGCCEEECCEEEEESS
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCCCcceeEEEeCcHHHHhhcCcchhhhhhHHHhhccccceEEEeCC
Confidence            689999999999999999999  9999999876433                      0 00                  


Q ss_pred             -------------CCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccC
Q 013952          201 -------------LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL  263 (433)
Q Consensus       201 -------------~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~  263 (433)
                                   ....++.+.+.+.+++.|++++++++|++++.  .           ..+.+|.||.|.|....
T Consensus        82 ~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~--~-----------~~~~ad~vV~AdG~~S~  144 (381)
T 3c4a_A           82 EPSLMSTGVLLCGVERRGLVHALRDKCRSQGIAIRFESPLLEHGE--L-----------PLADYDLVVLANGVNHK  144 (381)
T ss_dssp             SEEECCCCSCEEEEEHHHHHHHHHHHHHHTTCEEETTCCCCSGGG--C-----------CGGGCSEEEECCGGGGG
T ss_pred             eeEEecCCCceeeecHHHHHHHHHHHHHHCCCEEEeCCEeccchh--c-----------ccccCCEEEECCCCCch
Confidence                         00146677888888888999999999988753  1           12579999999997653

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=97.22  E-value=0.00026  Score=68.67  Aligned_cols=54  Identities=20%  Similarity=0.289  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHhc--------CcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013952          205 DIAAFYEGYYANK--------GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG  260 (433)
Q Consensus       205 ~~~~~l~~~l~~~--------GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~  260 (433)
                      .+.+.+.+.+.+.        |++++++++|++|...+++  ..|.+.+|+++.+|.||+|++.
T Consensus       207 ~l~~~l~~~l~~~~~~~~~i~~~~i~~~~~V~~i~~~~~~--v~v~~~~g~~~~ad~vI~a~~~  268 (472)
T 1b37_A          207 AVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSPGG--VTVKTEDNSVYSADYVMVSASL  268 (472)
T ss_dssp             HHHHHHHHTTSCBCTTTCCBCCTTEESSCCEEEEEECSSC--EEEEETTSCEEEESEEEECSCH
T ss_pred             HHHHHHHHhccccccccccccccEEEcCCEEEEEEEcCCc--EEEEECCCCEEEcCEEEEecCH
Confidence            4555565555543        7899999999999874333  4588899989999999999884

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=97.21  E-value=0.0016  Score=64.37  Aligned_cols=96  Identities=17%  Similarity=0.263  Sum_probs=68.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC-------------------------------------------
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP-------------------------------------------  199 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~-------------------------------------------  199 (433)
                      ..|+|||+|+.|+-+|..|++.|.+|+++++.+....                                           
T Consensus        27 ~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~~  106 (549)
T 2r0c_A           27 TDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVGTIGPRSMELFRRWGVAKQIRTAGWPGDHPLDAAWVTRV  106 (549)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCCSSCCCCEECHHHHHHHHHTTCHHHHHTSSCCTTSBCCEEEESSB
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCChHHHHhhcCCcccccceEEeccC
Confidence            3799999999999999999999999999987532100                                           


Q ss_pred             -C-----C--------------------CC-HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCC---C--c
Q 013952          200 -R-----L--------------------FT-ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD---G--R  247 (433)
Q Consensus       200 -~-----~--------------------~~-~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~---g--~  247 (433)
                       .     .                    ++ ..+.+.+.+.+++.   +++++++++++.++++  ..+++.+   |  .
T Consensus       107 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~---v~~~~~v~~~~~~~~~--v~v~~~~~~~G~~~  181 (549)
T 2r0c_A          107 GGHEVYRIPLGTADTRATPEHTPEPDAICPQHWLAPLLAEAVGER---LRTRSRLDSFEQRDDH--VRATITDLRTGATR  181 (549)
T ss_dssp             TSCEEEEECCCBTTTSCCCSSCSSCCEECCHHHHHHHHHHHHGGG---EECSEEEEEEEECSSC--EEEEEEETTTCCEE
T ss_pred             CCceeEeecccccccccccCCCCCcccccCHHHHHHHHHHHHHHh---cccCcEEEEEEEeCCE--EEEEEEECCCCCEE
Confidence             0     0                    00 13445555666555   8899999999874444  3355543   5  4


Q ss_pred             EEECCEEEEcccCccC
Q 013952          248 TLEADIVVVGVGGRPL  263 (433)
Q Consensus       248 ~i~~d~vi~a~G~~p~  263 (433)
                      ++.+|.||.|.|.+..
T Consensus       182 ~i~a~~vVgADG~~S~  197 (549)
T 2r0c_A          182 AVHARYLVACDGASSP  197 (549)
T ss_dssp             EEEEEEEEECCCTTCH
T ss_pred             EEEeCEEEECCCCCcH
Confidence            7999999999997543

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=97.20  E-value=0.0011  Score=65.14  Aligned_cols=33  Identities=24%  Similarity=0.377  Sum_probs=29.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW  196 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~  196 (433)
                      -.|+|||+|..|+-+|..+++ |.+|+++++.+.
T Consensus         9 ~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~   41 (540)
T 1chu_A            9 CDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPV   41 (540)
T ss_dssp             CSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCT
T ss_pred             CCEEEECccHHHHHHHHHHhc-CCcEEEEECCCC
Confidence            479999999999999999999 999999987643

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=97.18  E-value=0.00017  Score=71.10  Aligned_cols=55  Identities=11%  Similarity=0.061  Sum_probs=39.7

Q ss_pred             HHHhcCcEEEcCCeEEEEEecCC--CcEEEEEeC--CCc--EE---ECCEEEEcccCccChhhh
Q 013952          213 YYANKGIKIIKGTVAVGFTTNAD--GEVKEVKLK--DGR--TL---EADIVVVGVGGRPLISLF  267 (433)
Q Consensus       213 ~l~~~GV~v~~~~~v~~i~~~~~--g~~~~v~~~--~g~--~i---~~d~vi~a~G~~p~~~~~  267 (433)
                      ..++.|+++++++.|+++..+++  +++.+|+..  +|+  ++   .++.||+|+|...+..++
T Consensus       203 ~~~~~~~~v~~~~~v~~i~~~~~~~~~~~GV~~~~~~g~~~~~~v~a~k~VILaaGa~~sp~lL  266 (536)
T 1ju2_A          203 KGNSNNLRVGVHASVEKIIFSNAPGLTATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQLL  266 (536)
T ss_dssp             GSCTTTEEEEESCEEEEEEECCSSSCBEEEEEEECTTSCEEEEEEEEEEEEEECCHHHHHHHHH
T ss_pred             hhcCCCcEEEeCCEEEEEEECCCCCCEEEEEEEEeCCCceEEEEeccCCEEEEcCcccCCHHHH
Confidence            34678999999999999987432  378888774  454  34   568999999965444443

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=97.16  E-value=0.00033  Score=69.29  Aligned_cols=58  Identities=10%  Similarity=0.200  Sum_probs=43.1

Q ss_pred             HHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCC---Cc--EE---ECCEEEEcccCccChhhh
Q 013952          209 FYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD---GR--TL---EADIVVVGVGGRPLISLF  267 (433)
Q Consensus       209 ~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~---g~--~i---~~d~vi~a~G~~p~~~~~  267 (433)
                      .+....++.++++++++.|++|.. +++++.+|++.+   |+  ++   .++.||+|+|......++
T Consensus       201 ~l~~~~~~~~~~i~~~~~V~~i~~-~~~~~~gV~~~~~~~g~~~~~~v~~~~~VIlaaG~~~sp~lL  266 (546)
T 1kdg_A          201 YLQTALARPNFTFKTNVMVSNVVR-NGSQILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRIL  266 (546)
T ss_dssp             HHHHHHTCTTEEEECSCCEEEEEE-ETTEEEEEEESCTTSSGGGEEEEEEEEEEEECSHHHHHHHHH
T ss_pred             HHHHHhhCCCcEEEeCCEEEEEEE-eCCEEEEEEEEecCCCceeEEEEEeCCEEEEcCChhcCHHHH
Confidence            444444456999999999999987 456788888865   53  34   789999999976555544

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=97.10  E-value=0.00034  Score=71.64  Aligned_cols=42  Identities=24%  Similarity=0.234  Sum_probs=35.3

Q ss_pred             cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013952          217 KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG  260 (433)
Q Consensus       217 ~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~  260 (433)
                      .|++++++++|++|..++++  ..|.+.+|+++.+|.||+|++.
T Consensus       542 ~gl~I~l~t~V~~I~~~~~~--v~V~~~~G~~i~Ad~VIvA~P~  583 (776)
T 4gut_A          542 EGLDIQLKSPVQCIDYSGDE--VQVTTTDGTGYSAQKVLVTVPL  583 (776)
T ss_dssp             TTSCEESSCCEEEEECSSSS--EEEEETTCCEEEESEEEECCCH
T ss_pred             hCCcEEcCCeeEEEEEcCCE--EEEEECCCcEEEcCEEEECCCH
Confidence            37899999999999974444  5688889989999999999963

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=97.02  E-value=0.0004  Score=68.37  Aligned_cols=52  Identities=17%  Similarity=0.287  Sum_probs=38.1

Q ss_pred             HhcCcEEEcCCeEEEEEecCCCcEEEEEeCCC---cEEECCEEEEcccCccChhhh
Q 013952          215 ANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG---RTLEADIVVVGVGGRPLISLF  267 (433)
Q Consensus       215 ~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g---~~i~~d~vi~a~G~~p~~~~~  267 (433)
                      .+.++.+..++.+.++.. +++++..|...+.   ..+.++.||+|.|.--...++
T Consensus       222 ~r~nl~v~~~~~v~~i~~-~~~~a~gv~~~~~~~~~~~~a~~VILsAGai~SP~LL  276 (526)
T 3t37_A          222 GRKNLTILTGSRVRRLKL-EGNQVRSLEVVGRQGSAEVFADQIVLCAGALESPALL  276 (526)
T ss_dssp             TCTTEEEECSCEEEEEEE-ETTEEEEEEEEETTEEEEEEEEEEEECSHHHHHHHHH
T ss_pred             CCCCeEEEeCCEEEEEEe-cCCeEEEEEEEecCceEEEeecceEEcccccCCcchh
Confidence            456899999999999987 4666767665432   357889999999965444444

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=96.99  E-value=0.00054  Score=69.31  Aligned_cols=33  Identities=30%  Similarity=0.494  Sum_probs=31.3

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      .+||+|||||++|+++|..|++.|++   |+|+|+.
T Consensus       107 ~~~v~viG~G~~gl~~a~~l~~~g~~---v~~~e~~  139 (662)
T 2z3y_A          107 TGKVIIIGSGVSGLAAARQLQSFGMD---VTLLEAR  139 (662)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHTTCE---EEEECSS
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCe---EEEEecC
Confidence            57999999999999999999999987   9999998

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=96.97  E-value=0.0056  Score=61.13  Aligned_cols=52  Identities=21%  Similarity=0.277  Sum_probs=38.6

Q ss_pred             HHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEECCEEEEcccCcc
Q 013952          210 YEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGGRP  262 (433)
Q Consensus       210 l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~---~~g~--~i~~d~vi~a~G~~p  262 (433)
                      +.+.+++.||+++.++.+.++.. +++++.++..   .+|+  .+.++.||+|+|...
T Consensus       161 L~~~~~~~gv~i~~~~~v~~Li~-~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~  217 (621)
T 2h88_A          161 LYGRSLRYDTSYFVEYFALDLLM-ENGECRGVIALCIEDGTIHRFRAKNTVIATGGYG  217 (621)
T ss_dssp             HHHHHTTSCCEEEETEEEEEEEE-ETTEEEEEEEEETTTCCEEEEEEEEEEECCCCCG
T ss_pred             HHHHHHhCCCEEEEceEEEEEEE-ECCEEEEEEEEEcCCCcEEEEEcCeEEECCCccc
Confidence            33344567899999999999986 4677777665   4564  689999999999543

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=96.95  E-value=0.00064  Score=70.20  Aligned_cols=33  Identities=30%  Similarity=0.494  Sum_probs=31.3

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      .+||+|||||++||+||..|++.|++   |+|+|+.
T Consensus       278 ~~~v~viG~G~aGl~~A~~l~~~g~~---v~v~E~~  310 (852)
T 2xag_A          278 TGKVIIIGSGVSGLAAARQLQSFGMD---VTLLEAR  310 (852)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCc---EEEEEec
Confidence            57999999999999999999999987   9999998

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=96.94  E-value=0.0005  Score=68.05  Aligned_cols=53  Identities=21%  Similarity=0.218  Sum_probs=38.4

Q ss_pred             HhcCcEEEcCCeEEEEEecC-CCcEEEEEeC--CCc--EEEC-CEEEEcccCccChhhh
Q 013952          215 ANKGIKIIKGTVAVGFTTNA-DGEVKEVKLK--DGR--TLEA-DIVVVGVGGRPLISLF  267 (433)
Q Consensus       215 ~~~GV~v~~~~~v~~i~~~~-~g~~~~v~~~--~g~--~i~~-d~vi~a~G~~p~~~~~  267 (433)
                      ++.++++++++.|+++..++ ++++++|++.  +|+  ++.| .-||+|+|.-....++
T Consensus       217 ~r~Nl~v~~~a~v~ri~~~~~~~~a~GV~~~~~~g~~~~v~A~keVILsaGa~~sp~lL  275 (577)
T 3q9t_A          217 NKPNITIVPEVHSKRLIINEADRTCKGVTVVTAAGNELNFFADREVILSQGVFETPKLL  275 (577)
T ss_dssp             SCTTEEEECSEEEEEEEEETTTTEEEEEEEEETTSCEEEEEEEEEEEECSHHHHHHHHH
T ss_pred             cCCCeEEEcCcEEEEEEEeCCCCEEEEEEEEeCCCcEEEEEeeeEEEEcccccCChHHH
Confidence            45789999999999998743 5678888774  354  4667 4699999965444443

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=96.92  E-value=0.007  Score=62.01  Aligned_cols=34  Identities=21%  Similarity=0.357  Sum_probs=31.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW  196 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~  196 (433)
                      .+|+|||+|..|+-+|..|++.|.+|+++++.+.
T Consensus       337 ~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~~  370 (776)
T 4gut_A          337 KSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDR  370 (776)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCcEEEEecccc
Confidence            5899999999999999999999999999987543

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=96.92  E-value=0.0094  Score=59.96  Aligned_cols=51  Identities=18%  Similarity=0.253  Sum_probs=38.6

Q ss_pred             HHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEECCEEEEcccCc
Q 013952          210 YEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGGR  261 (433)
Q Consensus       210 l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~---~~g~--~i~~d~vi~a~G~~  261 (433)
                      +.+.+++.||+++.++.+.++.. +++++.++..   .+|+  .+.++.||+|+|-.
T Consensus       164 L~~~a~~~gv~i~~~~~v~~L~~-~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~  219 (660)
T 2bs2_A          164 VANECLKLGVSIQDRKEAIALIH-QDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGY  219 (660)
T ss_dssp             HHHHHHHHTCEEECSEEEEEEEE-ETTEEEEEEEEETTTCCEEEEECSEEEECCCCC
T ss_pred             HHHHHHhCCCEEEECcEEEEEEe-cCCEEEEEEEEECCCCcEEEEEcCEEEEccCcc
Confidence            34445567899999999999976 4677666654   4565  48999999999953

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=96.86  E-value=0.0069  Score=61.18  Aligned_cols=31  Identities=23%  Similarity=0.415  Sum_probs=29.2

Q ss_pred             cEEEECCCHHHHHHHHHHHh-----CCCeEEEEccC
Q 013952          164 KAVVVGGGYIGLELSAALKI-----NNIDVSMVYPE  194 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~-----~g~~V~li~~~  194 (433)
                      .|+|||+|+.|+-+|..|++     .|.+|+++++.
T Consensus        10 dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~   45 (665)
T 1pn0_A           10 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKR   45 (665)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSS
T ss_pred             cEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCC
Confidence            69999999999999999999     99999999865

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=96.85  E-value=0.00051  Score=69.11  Aligned_cols=33  Identities=21%  Similarity=0.467  Sum_probs=30.2

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcC--------CCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQG--------VKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g--------~~~~~V~lie~~   40 (433)
                      .++|+|||||++||+||+.|++.|        ++   |+|+|++
T Consensus        56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~---V~v~E~~   96 (721)
T 3ayj_A           56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGID---VQIYEAD   96 (721)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEE---EEEECCC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCcccccCCCce---EEEEecc
Confidence            479999999999999999999987        55   9999998

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=96.83  E-value=0.00078  Score=66.45  Aligned_cols=58  Identities=22%  Similarity=0.295  Sum_probs=41.6

Q ss_pred             HHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCC---Cc--EEECC-EEEEcccCccChhhh
Q 013952          210 YEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD---GR--TLEAD-IVVVGVGGRPLISLF  267 (433)
Q Consensus       210 l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~---g~--~i~~d-~vi~a~G~~p~~~~~  267 (433)
                      +....++.|+++++++.|++|..++++++.+|++.+   |+  ++.|+ .||+|+|..-...++
T Consensus       215 l~~a~~~~~~~i~~~~~V~~i~~~~~~~~~GV~~~~~~~g~~~~i~A~k~VIlaaG~~~sp~lL  278 (546)
T 2jbv_A          215 IHPIVEQENFTLLTGLRARQLVFDADRRCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLL  278 (546)
T ss_dssp             TGGGTTCTTEEEECSCEEEEEEECTTSBEEEEEEESSTTSCEEEEEEEEEEEECSHHHHHHHHH
T ss_pred             HHHHhcCCCcEEEeCCEEEEEEECCCCeEEEEEEEECCCCcEEEEEeCccEEEecCccCCchhh
Confidence            333444689999999999999873337788888743   53  68898 999999964333333

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=96.82  E-value=0.001  Score=65.00  Aligned_cols=58  Identities=14%  Similarity=0.097  Sum_probs=41.1

Q ss_pred             HHHHHHhcCcEEEcCCeEEEEEecCCC-cEEEEEeC--CC-----cEEECCEEEEcccCccChhhh
Q 013952          210 YEGYYANKGIKIIKGTVAVGFTTNADG-EVKEVKLK--DG-----RTLEADIVVVGVGGRPLISLF  267 (433)
Q Consensus       210 l~~~l~~~GV~v~~~~~v~~i~~~~~g-~~~~v~~~--~g-----~~i~~d~vi~a~G~~p~~~~~  267 (433)
                      +....+..++++++++.|++|..++++ ++.+|+..  +|     .++.|+.||+|+|..-...++
T Consensus       233 l~~a~~~~n~~i~~~~~v~~i~~~~~g~~~~gV~~~~~~g~~~~~~~~~A~~VIlaaGa~~sp~lL  298 (507)
T 1coy_A          233 LAQAAATGKLTITTLHRVTKVAPATGSGYSVTMEQIDEQGNVVATKVVTADRVFFAAGSVGTSKLL  298 (507)
T ss_dssp             HHHHHHTTCEEEECSEEEEEEEECSSSSEEEEEEEECTTSCEEEEEEEEEEEEEECSHHHHHHHHH
T ss_pred             HHHHHhcCCcEEEeCCEEEEEEECCCCCEEEEEEEeCCCCcccccEEEEeCEEEEccCccCCHHHH
Confidence            333334446999999999999884434 67888774  45     368899999999965444433

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=96.76  E-value=0.0011  Score=64.71  Aligned_cols=34  Identities=21%  Similarity=0.338  Sum_probs=31.8

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ..+|++|||+|++|+.+|.+|++.|.+   |+|||+.
T Consensus         4 ~~~d~~iiG~G~~g~~~a~~l~~~~~~---v~~~e~~   37 (504)
T 1n4w_A            4 GYVPAVVIGTGYGAAVSALRLGEAGVQ---TLMLEMG   37 (504)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCc---EEEEeCC
Confidence            368999999999999999999998887   9999998

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=96.75  E-value=0.0011  Score=65.86  Aligned_cols=56  Identities=13%  Similarity=0.160  Sum_probs=41.1

Q ss_pred             HHHHhcCcEEEcCCeEEEEEecCC---CcEEEEEeC--CCc--EEEC-CEEEEcccCccChhhh
Q 013952          212 GYYANKGIKIIKGTVAVGFTTNAD---GEVKEVKLK--DGR--TLEA-DIVVVGVGGRPLISLF  267 (433)
Q Consensus       212 ~~l~~~GV~v~~~~~v~~i~~~~~---g~~~~v~~~--~g~--~i~~-d~vi~a~G~~p~~~~~  267 (433)
                      ...++.++++++++.|+++..+++   +++.+|+..  +|+  .+.| +.||+|+|.-.+..++
T Consensus       239 ~~~~~~nl~i~~~~~v~~l~~~~~~~~~~~~GV~~~~~~g~~~~v~A~k~VILaaG~~~sp~lL  302 (587)
T 1gpe_A          239 PNYQRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGSAISPLIL  302 (587)
T ss_dssp             TTTTCTTEEEEESCEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEECSCTTTHHHHH
T ss_pred             HhhcCCCcEEEcCCEEEEEEECCCCCCCEEEEEEEEeCCCcEEEEEecccEEEccCCCCCHHHH
Confidence            344577999999999999976332   477788764  564  5778 8899999976555544

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=96.74  E-value=0.00095  Score=66.06  Aligned_cols=60  Identities=12%  Similarity=0.213  Sum_probs=43.3

Q ss_pred             HHHHHHHHhcCcEEEcCCeEEEEEecC---CCcEEEEEeC--CCc--EEECC-EEEEcccCccChhhh
Q 013952          208 AFYEGYYANKGIKIIKGTVAVGFTTNA---DGEVKEVKLK--DGR--TLEAD-IVVVGVGGRPLISLF  267 (433)
Q Consensus       208 ~~l~~~l~~~GV~v~~~~~v~~i~~~~---~g~~~~v~~~--~g~--~i~~d-~vi~a~G~~p~~~~~  267 (433)
                      ..+...+++.++++++++.|++|..+.   ++++++|++.  +|+  ++.|. -||+|+|.--...++
T Consensus       231 ayL~p~~~r~NL~V~t~a~V~rIl~d~~~~~~ra~GV~~~~~~G~~~~v~A~kEVILsAGa~~SPqLL  298 (583)
T 3qvp_A          231 EWLLPNYQRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTIL  298 (583)
T ss_dssp             HHTTTTTTCTTEEEECSCEEEEEEEECSSSSCEEEEEEEESSTTCEEEEEEEEEEEECSCTTTHHHHH
T ss_pred             HHHHHhhcCCCcEEEcCCEEEEEEeccCCCCCEEEEEEEEecCCcEEEEEECCEEEEeCCccCCHHHH
Confidence            344445567899999999999998742   5678888874  454  46776 599999965444444

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=96.72  E-value=0.0017  Score=63.48  Aligned_cols=43  Identities=14%  Similarity=0.186  Sum_probs=34.9

Q ss_pred             HHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013952          214 YANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG  260 (433)
Q Consensus       214 l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~  260 (433)
                      +++.|++++++++|++|..  ++.  .+.+.+|+++.||.||+++..
T Consensus       232 l~~~g~~i~~~~~V~~I~~--~~~--~v~~~~G~~~~ad~vI~t~P~  274 (513)
T 4gde_A          232 LPKEKTRFGEKGKVTKVNA--NNK--TVTLQDGTTIGYKKLVSTMAV  274 (513)
T ss_dssp             SCGGGEEESGGGCEEEEET--TTT--EEEETTSCEEEEEEEEECSCH
T ss_pred             HHhcCeeeecceEEEEEEc--cCC--EEEEcCCCEEECCEEEECCCH
Confidence            3445889999999999987  342  467889999999999998874

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=96.71  E-value=0.0081  Score=58.52  Aligned_cols=61  Identities=11%  Similarity=0.172  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHhcCcEEEcCCeEEEEEecCCC------cEEEEEeCCC-----cEEECCEEEEcccCccChh
Q 013952          205 DIAAFYEGYYANKGIKIIKGTVAVGFTTNADG------EVKEVKLKDG-----RTLEADIVVVGVGGRPLIS  265 (433)
Q Consensus       205 ~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g------~~~~v~~~~g-----~~i~~d~vi~a~G~~p~~~  265 (433)
                      ++.++++...++.+..++++++|+++...+.+      ....|++.++     +++.|+.||+|+|..|+..
T Consensus       146 E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~~~~~ar~vVlatG~~P~iP  217 (501)
T 4b63_A          146 EFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEISARRTRKVVIAIGGTAKMP  217 (501)
T ss_dssp             HHHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCEEEEEEEEEEECCCCEECCC
T ss_pred             HHHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCceEEEEEeCEEEECcCCCCCCC
Confidence            56777777778888889999999999864332      2456666543     3689999999999887654

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=96.65  E-value=0.015  Score=58.58  Aligned_cols=48  Identities=15%  Similarity=0.239  Sum_probs=36.4

Q ss_pred             HHHHhc-Cc-EEEcCCeEEEEEecCCC---cEEEEEe---CCCc--EEECCEEEEcccC
Q 013952          212 GYYANK-GI-KIIKGTVAVGFTTNADG---EVKEVKL---KDGR--TLEADIVVVGVGG  260 (433)
Q Consensus       212 ~~l~~~-GV-~v~~~~~v~~i~~~~~g---~~~~v~~---~~g~--~i~~d~vi~a~G~  260 (433)
                      +.+++. || +++.++.+.++..+ ++   ++.+|..   .+|+  .+.++.||+|+|.
T Consensus       159 ~~~~~~~gv~~i~~~~~v~~L~~~-~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGG  216 (643)
T 1jnr_A          159 EAAKMAVGEENIYERVFIFELLKD-NNDPNAVAGAVGFSVREPKFYVFKAKAVILATGG  216 (643)
T ss_dssp             HHHHHHHCGGGEECSEEEEEEEEC-TTCTTBEEEEEEEESSSSCEEEEECSEEEECCCC
T ss_pred             HHHHhcCCCcEEEecCEEEEEEEc-CCccceeEEEEEEEecCCcEEEEEcCEEEECCCc
Confidence            344455 89 99999999999873 44   7777653   4564  6899999999994

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=96.48  E-value=0.0039  Score=59.83  Aligned_cols=130  Identities=15%  Similarity=0.119  Sum_probs=79.2

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      .++|.|||.|.+|+++|..|+++|++   |++.|....                  .            .....+.+++.
T Consensus         9 ~k~v~viG~G~sG~s~A~~l~~~G~~---V~~~D~~~~------------------~------------~~~~~~~L~~~   55 (451)
T 3lk7_A            9 NKKVLVLGLARSGEAAARLLAKLGAI---VTVNDGKPF------------------D------------ENPTAQSLLEE   55 (451)
T ss_dssp             TCEEEEECCTTTHHHHHHHHHHTTCE---EEEEESSCG------------------G------------GCHHHHHHHHT
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCE---EEEEeCCcc------------------c------------CChHHHHHHhC
Confidence            47899999999999999999999988   999988710                  0            01123567778


Q ss_pred             CcEEEeCceEEEEECCCCEEEeCCCcEEe-cceEEEccCCCccccCCCCCCCCCC--CCEEEecCHHHHHHHHHHHHhcC
Q 013952           85 GIELILSTEIVRADIASKTLLSATGLIFK-YQILVIATGSTVLRLTDFGVEGADA--KNIFYLREIDDADKLVEAIKAKK  161 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~-~d~lvlAtG~~~~~~~~~~~~g~~~--~~v~~~~~~~~~~~~~~~~~~~~  161 (433)
                      |+++..+...     +.    .    .-. +|.+|+++|..+..|..   .....  -.++  ...+-   +.. +.  +
T Consensus        56 gi~~~~g~~~-----~~----~----~~~~~d~vv~spgi~~~~p~~---~~a~~~gi~v~--~~~e~---~~~-~~--~  111 (451)
T 3lk7_A           56 GIKVVCGSHP-----LE----L----LDEDFCYMIKNPGIPYNNPMV---KKALEKQIPVL--TEVEL---AYL-VS--E  111 (451)
T ss_dssp             TCEEEESCCC-----GG----G----GGSCEEEEEECTTSCTTSHHH---HHHHHTTCCEE--CHHHH---HHH-HC--C
T ss_pred             CCEEEECCCh-----HH----h----hcCCCCEEEECCcCCCCChhH---HHHHHCCCcEE--eHHHH---HHH-hc--C
Confidence            9988876421     10    0    012 78999999987655541   11111  1233  22221   111 11  3


Q ss_pred             CCcEEEECCC---HHHHHHHHHHHhCCCeEEEE
Q 013952          162 NGKAVVVGGG---YIGLELSAALKINNIDVSMV  191 (433)
Q Consensus       162 ~~~v~ViG~G---~~g~e~a~~l~~~g~~V~li  191 (433)
                      .+.+.|-|+.   -+...++..|...|.++.+.
T Consensus       112 ~~~IaVTGTnGKTTTt~ml~~iL~~~g~~~~~~  144 (451)
T 3lk7_A          112 SQLIGITGSNGKTTTTTMIAEVLNAGGQRGLLA  144 (451)
T ss_dssp             SEEEEEECSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHHhcCCCEEEe
Confidence            4556666653   34456677788888876543

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=96.47  E-value=0.0012  Score=65.21  Aligned_cols=61  Identities=15%  Similarity=0.212  Sum_probs=42.0

Q ss_pred             HHHHHHHHHhcCcEEEcCCeEEEEEec---CC-CcEEEEEeCC--C---cEEEC-CEEEEcccCccChhhh
Q 013952          207 AAFYEGYYANKGIKIIKGTVAVGFTTN---AD-GEVKEVKLKD--G---RTLEA-DIVVVGVGGRPLISLF  267 (433)
Q Consensus       207 ~~~l~~~l~~~GV~v~~~~~v~~i~~~---~~-g~~~~v~~~~--g---~~i~~-d~vi~a~G~~p~~~~~  267 (433)
                      ...+...+++.++++++++.|++|..+   ++ +++++|++.+  |   .++.| .-||+|.|.--...++
T Consensus       211 ~ayL~p~~~r~NL~Vlt~a~V~rIl~~~~~~g~~rA~GVe~~~~~g~~~~~v~A~kEVILsAGai~SPqlL  281 (566)
T 3fim_B          211 TAYLRPAQSRPNLSVLINAQVTKLVNSGTTNGLPAFRCVEYAEQEGAPTTTVCAKKEVVLSAGSVGTPILL  281 (566)
T ss_dssp             HHTHHHHTTCTTEEEESSCEEEEEECCEEETTEEECCEEEEESSTTSCCEEEEEEEEEEECCHHHHHHHHH
T ss_pred             HHHhhhhccCCCeEEECCCEEEEEEeecCCCCCCEEEEEEEEECCCceEEEEEeeeEEEEecCCcCChHHH
Confidence            344555556789999999999999873   12 5677887743  3   25677 6799999954334433

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=96.38  E-value=0.0098  Score=57.08  Aligned_cols=100  Identities=16%  Similarity=0.301  Sum_probs=61.3

Q ss_pred             CCEEEecCHHHHHHHHHHHH--hcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHh
Q 013952          139 KNIFYLREIDDADKLVEAIK--AKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYAN  216 (433)
Q Consensus       139 ~~v~~~~~~~~~~~~~~~~~--~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~  216 (433)
                      ..++...+..+..++.+.+.  +.+.++++|+|||.+|..+|..|.+ ..+|++++.         +++-++.+.+.|. 
T Consensus       210 D~v~~i~~~~~i~~~~~~~g~~~~~~~~v~I~GgG~ig~~lA~~L~~-~~~v~iIE~---------d~~r~~~la~~l~-  278 (461)
T 4g65_A          210 DEVFFVAASNHIRSVMSELQRLEKPYRRIMIVGGGNIGASLAKRLEQ-TYSVKLIER---------NLQRAEKLSEELE-  278 (461)
T ss_dssp             CEEEEEEETTTHHHHHHHTTGGGSCCCEEEEECCSHHHHHHHHHHTT-TSEEEEEES---------CHHHHHHHHHHCT-
T ss_pred             CEEEEEeccchHHHHHHhhccccccccEEEEEcchHHHHHHHHHhhh-cCceEEEec---------CHHHHHHHHHHCC-
Confidence            45555555566666665553  2256899999999999999999865 578999874         4555555555442 


Q ss_pred             cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013952          217 KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR  261 (433)
Q Consensus       217 ~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~  261 (433)
                       +..++.+          |+.-..+....| .-++|.++.+|+..
T Consensus       279 -~~~Vi~G----------D~td~~~L~ee~-i~~~D~~ia~T~~D  311 (461)
T 4g65_A          279 -NTIVFCG----------DAADQELLTEEN-IDQVDVFIALTNED  311 (461)
T ss_dssp             -TSEEEES----------CTTCHHHHHHTT-GGGCSEEEECCSCH
T ss_pred             -CceEEec----------cccchhhHhhcC-chhhcEEEEcccCc
Confidence             2333222          221111111122 34699999999964

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=95.94  E-value=0.03  Score=56.25  Aligned_cols=51  Identities=18%  Similarity=0.234  Sum_probs=36.4

Q ss_pred             HHHHHHhc--CcEEEcCCeEEEEEecCC--CcEEEEEe---CCCc--EEECCEEEEcccC
Q 013952          210 YEGYYANK--GIKIIKGTVAVGFTTNAD--GEVKEVKL---KDGR--TLEADIVVVGVGG  260 (433)
Q Consensus       210 l~~~l~~~--GV~v~~~~~v~~i~~~~~--g~~~~v~~---~~g~--~i~~d~vi~a~G~  260 (433)
                      +.+.+++.  ||+++.++.+.++..+++  |++.++..   .+|+  .+.|+.||+|||-
T Consensus       172 L~~~a~~~~~gV~i~~~~~v~dLi~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVLATGG  231 (662)
T 3gyx_A          172 VAEAAKNALGQDRIIERIFIVKLLLDKNTPNRIAGAVGFNLRANEVHIFKANAMVVACGG  231 (662)
T ss_dssp             HHHHHHHHHCTTTEECSEEECCCEECSSSTTBEEEEEEEESSSSCEEEEECSEEEECCCC
T ss_pred             HHHHHHhcCCCcEEEEceEEEEEEEeCCccceEEEEEEEEcCCCcEEEEEeCEEEECCCc
Confidence            34444555  899999998888876333  37777754   3453  5899999999994

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=95.90  E-value=0.01  Score=56.97  Aligned_cols=82  Identities=18%  Similarity=0.171  Sum_probs=59.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEE
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE  240 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~  240 (433)
                      .++++.|+|.|.+|+-+|..|.+.|.+|+..+..+...    ++     ..+.|++.||+++.+....++          
T Consensus         8 ~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~----~~-----~~~~L~~~gi~~~~g~~~~~~----------   68 (451)
T 3lk7_A            8 ENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDE----NP-----TAQSLLEEGIKVVCGSHPLEL----------   68 (451)
T ss_dssp             TTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGG----CH-----HHHHHHHTTCEEEESCCCGGG----------
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccC----Ch-----HHHHHHhCCCEEEECCChHHh----------
Confidence            57899999999999999999999999999998764211    11     234577889998876431100          


Q ss_pred             EEeCCCcEEECCEEEEcccCccChhhh
Q 013952          241 VKLKDGRTLEADIVVVGVGGRPLISLF  267 (433)
Q Consensus       241 v~~~~g~~i~~d~vi~a~G~~p~~~~~  267 (433)
                        + ++   .+|.||+++|..|+...+
T Consensus        69 --~-~~---~~d~vv~spgi~~~~p~~   89 (451)
T 3lk7_A           69 --L-DE---DFCYMIKNPGIPYNNPMV   89 (451)
T ss_dssp             --G-GS---CEEEEEECTTSCTTSHHH
T ss_pred             --h-cC---CCCEEEECCcCCCCChhH
Confidence              0 00   178999999988776654

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=95.87  E-value=0.0053  Score=59.60  Aligned_cols=126  Identities=13%  Similarity=0.125  Sum_probs=74.7

Q ss_pred             CcCeEEEECCCHHHHH-HHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHH
Q 013952            4 KSFKYVILGGGVSAGY-AAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK   82 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~-aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (433)
                      +.++|.|||.|-+|++ +|..|.++|++   |++.|...                                 ....+.++
T Consensus        21 ~~~~v~viGiG~sG~s~~A~~l~~~G~~---V~~~D~~~---------------------------------~~~~~~l~   64 (494)
T 4hv4_A           21 RVRHIHFVGIGGAGMGGIAEVLANEGYQ---ISGSDLAP---------------------------------NSVTQHLT   64 (494)
T ss_dssp             -CCEEEEETTTSTTHHHHHHHHHHTTCE---EEEECSSC---------------------------------CHHHHHHH
T ss_pred             cCCEEEEEEEcHhhHHHHHHHHHhCCCe---EEEEECCC---------------------------------CHHHHHHH
Confidence            3478999999999997 69999999987   88887661                                 01134567


Q ss_pred             hCCcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCCCCCCCC--CCEEEecCHHHHHHHHHHHHhc
Q 013952           83 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADA--KNIFYLREIDDADKLVEAIKAK  160 (433)
Q Consensus        83 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~--~~v~~~~~~~~~~~~~~~~~~~  160 (433)
                      +.|+.+..+...     +.    +     -.+|.+|+++|..+..|.   +.....  -.++.  ..   +.+...++  
T Consensus        65 ~~gi~~~~g~~~-----~~----~-----~~~d~vV~Spgi~~~~p~---~~~a~~~gi~v~~--~~---e~l~~~~~--  120 (494)
T 4hv4_A           65 ALGAQIYFHHRP-----EN----V-----LDASVVVVSTAISADNPE---IVAAREARIPVIR--RA---EMLAELMR--  120 (494)
T ss_dssp             HTTCEEESSCCG-----GG----G-----TTCSEEEECTTSCTTCHH---HHHHHHTTCCEEE--HH---HHHHHHHT--
T ss_pred             HCCCEEECCCCH-----HH----c-----CCCCEEEECCCCCCCCHH---HHHHHHCCCCEEc--HH---HHHHHHhc--
Confidence            789988876311     10    1     137999999997665443   111111  12332  22   22222222  


Q ss_pred             CCCcEEEECCC---HHHHHHHHHHHhCCCeEE
Q 013952          161 KNGKAVVVGGG---YIGLELSAALKINNIDVS  189 (433)
Q Consensus       161 ~~~~v~ViG~G---~~g~e~a~~l~~~g~~V~  189 (433)
                      ..+.+.|-|+.   -+...++..|...|.+.+
T Consensus       121 ~~~~IaVTGTnGKTTTt~ml~~iL~~~g~~~~  152 (494)
T 4hv4_A          121 YRHGIAVAGTHGKTTTTAMLSSIYAEAGLDPT  152 (494)
T ss_dssp             TSEEEEEECSSSHHHHHHHHHHHHHHTTCCCE
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHHhcCCCCE
Confidence            12346666643   344566777777786533

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=95.63  E-value=0.021  Score=52.11  Aligned_cols=80  Identities=19%  Similarity=0.228  Sum_probs=58.0

Q ss_pred             CCCcEEEECCCHHHHH-HHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEE
Q 013952          161 KNGKAVVVGGGYIGLE-LSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVK  239 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e-~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~  239 (433)
                      ..+++.|||.|-+|+. +|..|.+.|.+|+..+..+.      ++     ..+.|++.||+++.+.....+         
T Consensus         3 ~~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~------~~-----~~~~L~~~gi~v~~g~~~~~l---------   62 (326)
T 3eag_A            3 AMKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMY------PP-----MSTQLEALGIDVYEGFDAAQL---------   62 (326)
T ss_dssp             CCCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCC------TT-----HHHHHHHTTCEEEESCCGGGG---------
T ss_pred             CCcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCC------cH-----HHHHHHhCCCEEECCCCHHHc---------
Confidence            4679999999999996 89999999999999987642      11     234577789998765321100         


Q ss_pred             EEEeCCCcEEECCEEEEcccCccChhhh
Q 013952          240 EVKLKDGRTLEADIVVVGVGGRPLISLF  267 (433)
Q Consensus       240 ~v~~~~g~~i~~d~vi~a~G~~p~~~~~  267 (433)
                          ..   ..+|.||+++|..|..+.+
T Consensus        63 ----~~---~~~d~vV~Spgi~~~~p~~   83 (326)
T 3eag_A           63 ----DE---FKADVYVIGNVAKRGMDVV   83 (326)
T ss_dssp             ----GS---CCCSEEEECTTCCTTCHHH
T ss_pred             ----CC---CCCCEEEECCCcCCCCHHH
Confidence                00   1389999999988876654

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=95.54  E-value=0.014  Score=58.02  Aligned_cols=61  Identities=8%  Similarity=-0.003  Sum_probs=52.0

Q ss_pred             CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCC-CcEEEEEeCCCcEEECCEEEEcccCccC
Q 013952          203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD-GEVKEVKLKDGRTLEADIVVVGVGGRPL  263 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~-g~~~~v~~~~g~~i~~d~vi~a~G~~p~  263 (433)
                      ...+.+.+.+.++..|.+++++++|.+|..+.+ |++..|...+|+++.||.||.....-|.
T Consensus       377 ~g~L~qaL~r~~~~~Gg~i~l~~~V~~I~~~~~~g~v~gV~~~~Ge~i~A~~VVs~~~~lp~  438 (650)
T 1vg0_A          377 QGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSE  438 (650)
T ss_dssp             TTHHHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEGGGBCT
T ss_pred             hhHHHHHHHHHHHHcCCEEEeCCEeeEEEEeCCCCeEEEEEeCCCCEEEcCEEEEChhhcCH
Confidence            468889999999999999999999999987333 7888888888999999999997766553

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=95.47  E-value=0.014  Score=53.29  Aligned_cols=78  Identities=15%  Similarity=0.060  Sum_probs=53.4

Q ss_pred             cCeEEEECCCHHHHH-HHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHh
Q 013952            5 SFKYVILGGGVSAGY-AAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   83 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~-aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (433)
                      .++|.|||.|.+|++ +|..|+++|++   |++.|....                                ....+.+++
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~---V~~~D~~~~--------------------------------~~~~~~L~~   48 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAGFE---VSGCDAKMY--------------------------------PPMSTQLEA   48 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTTCE---EEEEESSCC--------------------------------TTHHHHHHH
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCCCE---EEEEcCCCC--------------------------------cHHHHHHHh
Confidence            458999999999997 78889999987   999988710                                012345667


Q ss_pred             CCcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccC
Q 013952           84 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLT  129 (433)
Q Consensus        84 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~  129 (433)
                      .|+++..+...     +.    +..   ..+|.+|+++|-.+..|.
T Consensus        49 ~gi~v~~g~~~-----~~----l~~---~~~d~vV~Spgi~~~~p~   82 (326)
T 3eag_A           49 LGIDVYEGFDA-----AQ----LDE---FKADVYVIGNVAKRGMDV   82 (326)
T ss_dssp             TTCEEEESCCG-----GG----GGS---CCCSEEEECTTCCTTCHH
T ss_pred             CCCEEECCCCH-----HH----cCC---CCCCEEEECCCcCCCCHH
Confidence            78888766321     10    000   147999999997665443

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=95.45  E-value=0.011  Score=57.64  Aligned_cols=35  Identities=26%  Similarity=0.365  Sum_probs=30.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC  197 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~  197 (433)
                      |+|+|||+|..|+-+|..|++.|.+|+++++.+++
T Consensus         2 k~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~~   36 (501)
T 4dgk_A            2 KPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDKP   36 (501)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEECCC---
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCcEEEEccCCCC
Confidence            68999999999999999999999999999987654

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=95.27  E-value=0.024  Score=44.52  Aligned_cols=33  Identities=21%  Similarity=0.482  Sum_probs=30.3

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      +.+++|+|+|..|...|..|.+.|++   |+++|++
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~~---V~~id~~   38 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGKK---VLAVDKS   38 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCC---EEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCe---EEEEECC
Confidence            35899999999999999999999987   9999987

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=95.20  E-value=0.028  Score=44.89  Aligned_cols=33  Identities=15%  Similarity=0.291  Sum_probs=30.3

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ..+++|+|+|..|...|..|.+.|++   |++++++
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~---V~vid~~   35 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQN---VTVISNL   35 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCC---EEEEECC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCC---EEEEECC
Confidence            56899999999999999999999887   9999886

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=95.13  E-value=0.019  Score=52.40  Aligned_cols=73  Identities=11%  Similarity=0.071  Sum_probs=48.8

Q ss_pred             HHHHhcCCCcEEEECCCHHHHHHHHHHHh--CCCeEEEEccCCccCCCC------CC-HHHHHHHHHHHHhcCcEEEcCC
Q 013952          155 EAIKAKKNGKAVVVGGGYIGLELSAALKI--NNIDVSMVYPEPWCMPRL------FT-ADIAAFYEGYYANKGIKIIKGT  225 (433)
Q Consensus       155 ~~~~~~~~~~v~ViG~G~~g~e~a~~l~~--~g~~V~li~~~~~~~~~~------~~-~~~~~~l~~~l~~~GV~v~~~~  225 (433)
                      +.+.+.....|+|||+|+.|+-+|..|++  .|.+|+++++.+.+....      ++ ..+.+.+.+.+++.|+++..+.
T Consensus        58 ~~~~~~~~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~GG~~~~~~~~~~~~~l~~~~~~~~~e~Gv~~~~~~  137 (326)
T 3fpz_A           58 KDLDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEG  137 (326)
T ss_dssp             HHHHHTTEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCSTTCCCEEEETTTHHHHHHTTCCCEECS
T ss_pred             hhhhhccCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCCceEEeCCccCCHHHHHHHHHHHHHHcCCEEEECC
Confidence            33444456789999999999999999974  599999999865432110      11 1112234456678888887665


Q ss_pred             eE
Q 013952          226 VA  227 (433)
Q Consensus       226 ~v  227 (433)
                      ..
T Consensus       138 ~~  139 (326)
T 3fpz_A          138 DY  139 (326)
T ss_dssp             SE
T ss_pred             cc
Confidence            43

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=94.80  E-value=0.032  Score=43.47  Aligned_cols=33  Identities=18%  Similarity=0.317  Sum_probs=29.2

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      .++|+|||+|..|...|..|.+.|.+   |++++++
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~---v~~~d~~   36 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHD---IVLIDID   36 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCE---EEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCe---EEEEECC
Confidence            35899999999999999999998876   9999877

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=94.78  E-value=0.041  Score=43.16  Aligned_cols=32  Identities=13%  Similarity=0.258  Sum_probs=30.1

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      .+++|||.|..|...|..|.+.|++   |+++|++
T Consensus         8 ~~viIiG~G~~G~~la~~L~~~g~~---v~vid~~   39 (140)
T 3fwz_A            8 NHALLVGYGRVGSLLGEKLLASDIP---LVVIETS   39 (140)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCC---EEEEESC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCC---EEEEECC
Confidence            5799999999999999999999987   9999988

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=94.77  E-value=0.028  Score=52.44  Aligned_cols=34  Identities=24%  Similarity=0.258  Sum_probs=31.4

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc
Q 013952          164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC  197 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~  197 (433)
                      .|+|||+|+.|+-+|..|++.|.+|+++++.+.+
T Consensus         6 DViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~   39 (397)
T 3oz2_A            6 DVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEI   39 (397)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSST
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            4899999999999999999999999999987654

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=94.76  E-value=0.031  Score=42.10  Aligned_cols=33  Identities=9%  Similarity=0.263  Sum_probs=28.9

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcC-CCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQG-VKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g-~~~~~V~lie~~   40 (433)
                      .++|+|+|+|..|...+..|.+.| ++   |++++++
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~---v~~~~r~   38 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNYS---VTVADHD   38 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSEE---EEEEESC
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCce---EEEEeCC
Confidence            358999999999999999999988 54   8888877

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=94.74  E-value=0.038  Score=44.22  Aligned_cols=33  Identities=24%  Similarity=0.295  Sum_probs=30.0

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ..+|+|||+|..|...|..|++.|.+   |++++++
T Consensus        19 ~~~v~IiG~G~iG~~la~~L~~~g~~---V~vid~~   51 (155)
T 2g1u_A           19 SKYIVIFGCGRLGSLIANLASSSGHS---VVVVDKN   51 (155)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCe---EEEEECC
Confidence            36899999999999999999998876   9999887

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=94.37  E-value=0.045  Score=49.45  Aligned_cols=38  Identities=18%  Similarity=0.331  Sum_probs=33.1

Q ss_pred             CCCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      |||+..+|.|||+|..|.+.|..|++.|+  .+|+++|..
T Consensus         4 m~~~~~kv~ViGaG~vG~~ia~~l~~~g~--~~v~l~D~~   41 (315)
T 3tl2_A            4 MTIKRKKVSVIGAGFTGATTAFLLAQKEL--ADVVLVDIP   41 (315)
T ss_dssp             CCCCCCEEEEECCSHHHHHHHHHHHHTTC--CEEEEECCG
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHhCCC--CeEEEEecc
Confidence            66667899999999999999999999887  359998876

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=94.27  E-value=0.054  Score=52.54  Aligned_cols=61  Identities=16%  Similarity=0.205  Sum_probs=45.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCC---------C--------HHHHHHHHHHHHhcCcEE
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLF---------T--------ADIAAFYEGYYANKGIKI  221 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~---------~--------~~~~~~l~~~l~~~GV~v  221 (433)
                      .+++|+|||+|.+|+.+|..|.+.|.+|+++++.+++..+..         .        ......+.+.+++.|+++
T Consensus        32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~  109 (498)
T 2iid_A           32 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWYANLGPMRLPEKHRIVREYIRKFDLRL  109 (498)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCCEEEETTTTEEEESSCCCEETTCHHHHHHHHHTTCCE
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCceeeeccCCCCchhhcCcccccchHHHHHHHHHHhCCCc
Confidence            357899999999999999999999999999998765543210         0        011345667777888765

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=94.13  E-value=0.062  Score=45.75  Aligned_cols=107  Identities=16%  Similarity=0.243  Sum_probs=67.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEE
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE  240 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~  240 (433)
                      .+++++|||+|.+|...+..|.+.|.+|+++.+.       ..++    +.+..++.+++++...-    ..        
T Consensus        30 ~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~-------~~~~----l~~l~~~~~i~~i~~~~----~~--------   86 (223)
T 3dfz_A           30 KGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT-------VSAE----INEWEAKGQLRVKRKKV----GE--------   86 (223)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS-------CCHH----HHHHHHTTSCEEECSCC----CG--------
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC-------CCHH----HHHHHHcCCcEEEECCC----CH--------
Confidence            5799999999999999999999999999999763       2444    33444556676653311    00        


Q ss_pred             EEeCCCcEEECCEEEEcccCccChhhhhcccccCCCcEEeC----CC-CCCCCCCeEEcCccc
Q 013952          241 VKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETD----DF-FKTSADDVYAVGDVA  298 (433)
Q Consensus       241 v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~~~~~g~i~vd----~~-~~t~~~~vfa~Gd~~  298 (433)
                           +..-.+|+||.||+.......+....  . .++.||    +. +.--.|.++--|+..
T Consensus        87 -----~dL~~adLVIaAT~d~~~N~~I~~~a--k-~gi~VNvvD~p~~~~f~~Paiv~rg~l~  141 (223)
T 3dfz_A           87 -----EDLLNVFFIVVATNDQAVNKFVKQHI--K-NDQLVNMASSFSDGNIQIPAQFSRGRLS  141 (223)
T ss_dssp             -----GGSSSCSEEEECCCCTHHHHHHHHHS--C-TTCEEEC-----CCSEECCEEEEETTEE
T ss_pred             -----hHhCCCCEEEECCCCHHHHHHHHHHH--h-CCCEEEEeCCcccCeEEEeeEEEeCCEE
Confidence                 01123899999999764433332111  2 345544    12 233568887777754

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=94.07  E-value=0.053  Score=51.33  Aligned_cols=35  Identities=31%  Similarity=0.323  Sum_probs=31.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC  197 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~  197 (433)
                      ++|+|||+|..|+-+|..|++.|.+|+++++.+.+
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~   35 (421)
T 3nrn_A            1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMI   35 (421)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence            36899999999999999999999999999987653

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=94.06  E-value=0.087  Score=50.44  Aligned_cols=34  Identities=21%  Similarity=0.429  Sum_probs=32.3

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ..+||||||||++||+||..|++.|++   |+|+|++
T Consensus        10 ~~~dvvVIGaG~~GL~aA~~La~~G~~---V~vlE~~   43 (453)
T 2bcg_G           10 TDYDVIVLGTGITECILSGLLSVDGKK---VLHIDKQ   43 (453)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHHHTTCC---EEEECSS
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCe---EEEEeCC
Confidence            468999999999999999999999988   9999999

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=94.01  E-value=0.059  Score=42.14  Aligned_cols=33  Identities=15%  Similarity=0.364  Sum_probs=29.4

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ..+++|+|+|..|...|..|.+.|.+   |++++++
T Consensus         6 ~~~v~I~G~G~iG~~~a~~l~~~g~~---v~~~d~~   38 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELHRMGHE---VLAVDIN   38 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCC---CEEEESC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCE---EEEEeCC
Confidence            35799999999999999999998876   8888877

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=93.89  E-value=0.06  Score=51.26  Aligned_cols=36  Identities=14%  Similarity=0.388  Sum_probs=33.1

Q ss_pred             CCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         2 m~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      |+..+||+|||+|++|+++|..|++.|++   |+++|++
T Consensus         3 ~~~~~~v~iiG~G~~gl~~a~~l~~~g~~---v~~~e~~   38 (433)
T 1d5t_A            3 MDEEYDVIVLGTGLTECILSGIMSVNGKK---VLHMDRN   38 (433)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHHTTCC---EEEECSS
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCc---EEEEecC
Confidence            44578999999999999999999999987   9999998

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=93.86  E-value=0.072  Score=51.59  Aligned_cols=77  Identities=18%  Similarity=0.148  Sum_probs=56.0

Q ss_pred             CCCcEEEECCCHHHHH-HHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEE
Q 013952          161 KNGKAVVVGGGYIGLE-LSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVK  239 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e-~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~  239 (433)
                      ..+++.|||-|-+|+- +|..|.+.|.+|+..+...       .+     ..+.|++.||+++.+.....          
T Consensus        21 ~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~-------~~-----~~~~l~~~gi~~~~g~~~~~----------   78 (494)
T 4hv4_A           21 RVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAP-------NS-----VTQHLTALGAQIYFHHRPEN----------   78 (494)
T ss_dssp             -CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSC-------CH-----HHHHHHHTTCEEESSCCGGG----------
T ss_pred             cCCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCC-------CH-----HHHHHHHCCCEEECCCCHHH----------
Confidence            3689999999999996 7999999999999987542       11     23457888999887632110          


Q ss_pred             EEEeCCCcEEECCEEEEcccCccChhhh
Q 013952          240 EVKLKDGRTLEADIVVVGVGGRPLISLF  267 (433)
Q Consensus       240 ~v~~~~g~~i~~d~vi~a~G~~p~~~~~  267 (433)
                         +     ..+|.||+++|..+....+
T Consensus        79 ---~-----~~~d~vV~Spgi~~~~p~~   98 (494)
T 4hv4_A           79 ---V-----LDASVVVVSTAISADNPEI   98 (494)
T ss_dssp             ---G-----TTCSEEEECTTSCTTCHHH
T ss_pred             ---c-----CCCCEEEECCCCCCCCHHH
Confidence               0     1389999999987765543

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=93.86  E-value=0.19  Score=45.64  Aligned_cols=82  Identities=21%  Similarity=0.124  Sum_probs=52.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEc--CCeEEEEEecCCCcEEE
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIK--GTVAVGFTTNADGEVKE  240 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~--~~~v~~i~~~~~g~~~~  240 (433)
                      .++.|||+|.+|.-+|..|.+.|.+|+++.|.+          .     +.+++.|+.+..  .... .+..      ..
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~----------~-----~~i~~~Gl~~~~~~~g~~-~~~~------~~   60 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD----------Y-----ETVKAKGIRIRSATLGDY-TFRP------AA   60 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT----------H-----HHHHHHCEEEEETTTCCE-EECC------SC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh----------H-----HHHHhCCcEEeecCCCcE-EEee------ee
Confidence            489999999999999999999999999997642          0     345666776542  1111 0100      01


Q ss_pred             EEeCCC-cEE-ECCEEEEcccCccChhhh
Q 013952          241 VKLKDG-RTL-EADIVVVGVGGRPLISLF  267 (433)
Q Consensus       241 v~~~~g-~~i-~~d~vi~a~G~~p~~~~~  267 (433)
                      +. .+- +.. .+|.||+|+-.....+.+
T Consensus        61 ~~-~~~~~~~~~~DlVilavK~~~~~~~l   88 (320)
T 3i83_A           61 VV-RSAAELETKPDCTLLCIKVVEGADRV   88 (320)
T ss_dssp             EE-SCGGGCSSCCSEEEECCCCCTTCCHH
T ss_pred             eE-CCHHHcCCCCCEEEEecCCCChHHHH
Confidence            11 111 122 589999999876655444

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=93.81  E-value=0.069  Score=45.46  Aligned_cols=33  Identities=18%  Similarity=0.468  Sum_probs=30.5

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      .+.|+|||||..|...+..|.+.|.+   |+|++++
T Consensus        31 gk~VLVVGgG~va~~ka~~Ll~~GA~---VtVvap~   63 (223)
T 3dfz_A           31 GRSVLVVGGGTIATRRIKGFLQEGAA---ITVVAPT   63 (223)
T ss_dssp             TCCEEEECCSHHHHHHHHHHGGGCCC---EEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCE---EEEECCC
Confidence            57899999999999999999999877   9999887

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=93.79  E-value=0.21  Score=49.62  Aligned_cols=33  Identities=15%  Similarity=0.449  Sum_probs=31.8

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      +|||+|||+|..|-..|..|++.|.+   |++||++
T Consensus         8 ~~D~~i~GtGl~~~~~a~~~~~~g~~---vl~id~~   40 (650)
T 1vg0_A            8 DFDVIVIGTGLPESIIAAACSRSGQR---VLHVDSR   40 (650)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCC---EEEECSS
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCCCE---EEEEcCC
Confidence            69999999999999999999999988   9999999

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=93.78  E-value=0.062  Score=50.85  Aligned_cols=34  Identities=32%  Similarity=0.377  Sum_probs=31.4

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc
Q 013952          164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC  197 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~  197 (433)
                      +|+|||+|..|+-+|..|++.|.+|+++++.+.+
T Consensus         2 dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~   35 (425)
T 3ka7_A            2 KTVVIGAGLGGLLSAARLSKAGHEVEVFERLPIT   35 (425)
T ss_dssp             EEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCceEEEeCCCCC
Confidence            6899999999999999999999999999987654

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=93.67  E-value=0.053  Score=51.57  Aligned_cols=34  Identities=26%  Similarity=0.455  Sum_probs=31.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Q 013952          162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP  195 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~  195 (433)
                      .++|+|||+|+.|+.+|..|++.|.+|+++++.+
T Consensus        22 ~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           22 KKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             -CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            3589999999999999999999999999998765

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=93.60  E-value=0.081  Score=47.12  Aligned_cols=36  Identities=22%  Similarity=0.226  Sum_probs=31.9

Q ss_pred             CCCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ||. ..+|.|||+|.-|...|..+++.|++   |+++|++
T Consensus         1 Mm~-~~kV~VIGaG~mG~~iA~~la~~G~~---V~l~d~~   36 (283)
T 4e12_A            1 MTG-ITNVTVLGTGVLGSQIAFQTAFHGFA---VTAYDIN   36 (283)
T ss_dssp             CCS-CCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSS
T ss_pred             CCC-CCEEEEECCCHHHHHHHHHHHhCCCe---EEEEeCC
Confidence            553 56899999999999999999999986   9999887

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=93.45  E-value=0.087  Score=48.89  Aligned_cols=36  Identities=22%  Similarity=0.332  Sum_probs=32.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccC-Cc
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE-PW  196 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~-~~  196 (433)
                      ...+|+|||+|.+|+-+|..|.+.|.+|+++++. ++
T Consensus        43 ~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~   79 (376)
T 2e1m_A           43 PPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANR   79 (376)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSC
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccc
Confidence            3578999999999999999999999999999987 44

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=93.45  E-value=0.088  Score=49.80  Aligned_cols=61  Identities=15%  Similarity=0.165  Sum_probs=44.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCC-CeEEEEccCCccCCC----------------CCCHHHHHHHHHHHHhcCcEEE
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINN-IDVSMVYPEPWCMPR----------------LFTADIAAFYEGYYANKGIKII  222 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g-~~V~li~~~~~~~~~----------------~~~~~~~~~l~~~l~~~GV~v~  222 (433)
                      ...+|+|||+|..|+-+|..|++.| .+|+++++.+++...                .+.. ....+.+.+++.|+++.
T Consensus         5 ~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~GG~~~t~~~~G~~~d~G~~~~~~-~~~~~~~l~~~~g~~~~   82 (424)
T 2b9w_A            5 KDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCHSPNYHGRRYEMGAIMGVP-SYDTIQEIMDRTGDKVD   82 (424)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSSTTCCCCEETTEECCSSCCCBCT-TCHHHHHHHHHHCCCCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCCCCcccccCCCCcccccCceeecC-CcHHHHHHHHHhCCccc
Confidence            3568999999999999999999999 899999987654211                0111 12346677788888653

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=93.40  E-value=0.078  Score=48.90  Aligned_cols=33  Identities=24%  Similarity=0.428  Sum_probs=31.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEP  195 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~  195 (433)
                      ..|+|||+|..|+-+|..|++.|.+|+++++.+
T Consensus         5 ~dvvIIG~G~~Gl~~A~~La~~G~~V~vlE~~~   37 (369)
T 3dme_A            5 IDCIVIGAGVVGLAIARALAAGGHEVLVAEAAE   37 (369)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            479999999999999999999999999999875

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=93.39  E-value=0.11  Score=47.27  Aligned_cols=39  Identities=26%  Similarity=0.406  Sum_probs=32.5

Q ss_pred             CCCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      |++...+|.|||+|..|.+.|..|+..++ ..+++++|..
T Consensus         1 m~~~~~kI~ViGaG~vG~~~a~~l~~~~~-~~~l~l~D~~   39 (326)
T 3pqe_A            1 MNKHVNKVALIGAGFVGSSYAFALINQGI-TDELVVIDVN   39 (326)
T ss_dssp             -CCSCCEEEEECCSHHHHHHHHHHHHHTC-CSEEEEECSC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHhCCC-CceEEEEecc
Confidence            66666799999999999999999999886 2459999876

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=93.36  E-value=0.093  Score=48.69  Aligned_cols=33  Identities=27%  Similarity=0.333  Sum_probs=30.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEP  195 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~  195 (433)
                      +.|+|||+|..|+++|..+++.|.+|++++..+
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~   34 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRP   34 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCcEEEEeccC
Confidence            479999999999999999999999999998754

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=93.20  E-value=0.081  Score=50.16  Aligned_cols=34  Identities=29%  Similarity=0.430  Sum_probs=31.0

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc
Q 013952          164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC  197 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~  197 (433)
                      .|+|||+|..|+-+|..|++.|.+|+++++.+++
T Consensus         3 dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~   36 (431)
T 3k7m_X            3 DAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERL   36 (431)
T ss_dssp             EEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence            6899999999999999999999999999986543

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=93.19  E-value=0.08  Score=50.98  Aligned_cols=35  Identities=31%  Similarity=0.349  Sum_probs=31.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCC--eEEEEccCCcc
Q 013952          163 GKAVVVGGGYIGLELSAALKINNI--DVSMVYPEPWC  197 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~--~V~li~~~~~~  197 (433)
                      ++|+|||+|.+|+-+|..|++.|.  +|++++..+++
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~   39 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERL   39 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSS
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCC
Confidence            589999999999999999999999  99999986543

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=93.18  E-value=0.037  Score=52.80  Aligned_cols=78  Identities=13%  Similarity=0.143  Sum_probs=55.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEE
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE  240 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~  240 (433)
                      .+++++|||.|.+|+..|..|.+.|.+|+..+.......   .        ..++ .|+++..+...    .  +    .
T Consensus         4 ~~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~---~--------~~l~-~G~~~~~g~~~----~--~----~   61 (439)
T 2x5o_A            4 QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPG---L--------DKLP-EAVERHTGSLN----D--E----W   61 (439)
T ss_dssp             TTCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCTT---G--------GGSC-TTSCEEESSCC----H--H----H
T ss_pred             CCCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcch---h--------HHhh-CCCEEEECCCc----H--H----H
Confidence            578999999999999999999999999999987653211   1        2345 78888755421    0  0    0


Q ss_pred             EEeCCCcEEECCEEEEcccCccChhhh
Q 013952          241 VKLKDGRTLEADIVVVGVGGRPLISLF  267 (433)
Q Consensus       241 v~~~~g~~i~~d~vi~a~G~~p~~~~~  267 (433)
                      +      . .+|.||+++|..|+...+
T Consensus        62 ~------~-~~d~vV~s~gi~~~~p~~   81 (439)
T 2x5o_A           62 L------M-AADLIVASPGIALAHPSL   81 (439)
T ss_dssp             H------H-TCSEEEECTTSCTTCHHH
T ss_pred             h------c-cCCEEEeCCCCCCCCHHH
Confidence            0      1 378999999987655433

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=93.13  E-value=0.085  Score=49.04  Aligned_cols=33  Identities=30%  Similarity=0.444  Sum_probs=30.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEP  195 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~  195 (433)
                      ..|+|||+|..|+-+|..|++.|.+|+++++.+
T Consensus        18 ~dvvIIGgG~~Gl~~A~~La~~G~~V~llE~~~   50 (382)
T 1ryi_A           18 YEAVVIGGGIIGSAIAYYLAKENKNTALFESGT   50 (382)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            489999999999999999999999999999864

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=93.09  E-value=0.12  Score=41.16  Aligned_cols=36  Identities=19%  Similarity=0.263  Sum_probs=32.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW  196 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~  196 (433)
                      ..++++|+|+|.+|..++..|.+.|.+|+++++.+.
T Consensus        18 ~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~   53 (155)
T 2g1u_A           18 KSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEY   53 (155)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            568999999999999999999999999999987643

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=93.08  E-value=0.11  Score=47.04  Aligned_cols=36  Identities=28%  Similarity=0.298  Sum_probs=30.7

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ++.+|+|||+|..|.+.|..|+..++ ..+|+++|.+
T Consensus         6 ~~~KI~IiGaG~vG~~~a~~l~~~~~-~~ev~L~Di~   41 (318)
T 1y6j_A            6 SRSKVAIIGAGFVGASAAFTMALRQT-ANELVLIDVF   41 (318)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHHTTC-SSEEEEECCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-CCEEEEEeCC
Confidence            45799999999999999999999876 3569999877

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=93.07  E-value=0.12  Score=42.50  Aligned_cols=32  Identities=25%  Similarity=0.134  Sum_probs=29.7

Q ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCCCCcEEEEcCC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQ-GVKPGELAIISKE   40 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~-g~~~~~V~lie~~   40 (433)
                      .+|+|||+|..|...|..|.+. |++   |+++|++
T Consensus        40 ~~v~IiG~G~~G~~~a~~L~~~~g~~---V~vid~~   72 (183)
T 3c85_A           40 AQVLILGMGRIGTGAYDELRARYGKI---SLGIEIR   72 (183)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHCSC---EEEEESC
T ss_pred             CcEEEECCCHHHHHHHHHHHhccCCe---EEEEECC
Confidence            4799999999999999999998 987   9999888

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=93.07  E-value=0.086  Score=49.36  Aligned_cols=34  Identities=26%  Similarity=0.347  Sum_probs=31.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW  196 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~  196 (433)
                      ..|+|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus         5 ~DVvIIGaG~~Gl~~A~~La~~G~~V~vlE~~~~   38 (397)
T 2oln_A            5 YDVVVVGGGPVGLATAWQVAERGHRVLVLERHTF   38 (397)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCT
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            3799999999999999999999999999998654

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=93.04  E-value=0.059  Score=52.75  Aligned_cols=34  Identities=18%  Similarity=0.395  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHh------------CCCeEEEEccCC
Q 013952          162 NGKAVVVGGGYIGLELSAALKI------------NNIDVSMVYPEP  195 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~------------~g~~V~li~~~~  195 (433)
                      ..+|+|||+|+.|+-+|..|++            .|.+|+++++.+
T Consensus         7 ~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~~~   52 (526)
T 2pyx_A            7 ITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPD   52 (526)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEECSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeCCC
Confidence            4689999999999999999999            899999999754

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=92.95  E-value=0.11  Score=50.21  Aligned_cols=36  Identities=25%  Similarity=0.312  Sum_probs=32.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc
Q 013952          162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC  197 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~  197 (433)
                      ..+|+|||+|..|+-+|..|.+.|.+|++++..+++
T Consensus        11 ~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~   46 (489)
T 2jae_A           11 SHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRP   46 (489)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCC
Confidence            568999999999999999999999999999877653

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=92.94  E-value=0.089  Score=49.66  Aligned_cols=33  Identities=18%  Similarity=0.295  Sum_probs=31.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEP  195 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~  195 (433)
                      ..|+|||+|+.|+-+|..|++.|.+|+++++.+
T Consensus         6 ~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~   38 (421)
T 3nix_A            6 VDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQK   38 (421)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            479999999999999999999999999999875

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=92.94  E-value=0.096  Score=48.80  Aligned_cols=34  Identities=21%  Similarity=0.237  Sum_probs=31.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW  196 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~  196 (433)
                      ..|+|||+|..|+-+|..|++.|.+|+++++.+.
T Consensus         4 ~dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~~   37 (389)
T 2gf3_A            4 FDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDP   37 (389)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCS
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            3799999999999999999999999999997653

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=92.88  E-value=0.1  Score=48.48  Aligned_cols=34  Identities=24%  Similarity=0.493  Sum_probs=31.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Q 013952          162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP  195 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~  195 (433)
                      ...|+|||+|.+|+.+|..|++.|.+|+++++..
T Consensus         5 ~~dVvIIGgGi~Gl~~A~~La~~G~~V~lle~~~   38 (382)
T 1y56_B            5 KSEIVVIGGGIVGVTIAHELAKRGEEVTVIEKRF   38 (382)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            3589999999999999999999999999999863

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=92.86  E-value=0.24  Score=48.91  Aligned_cols=169  Identities=12%  Similarity=0.085  Sum_probs=0.0

Q ss_pred             CCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-C----------------------------------------
Q 013952            3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-V----------------------------------------   41 (433)
Q Consensus         3 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~----------------------------------------   41 (433)
                      ..+.+++|+|.|..|...|..|.+.+.+   |+++|++ .                                        
T Consensus       125 ~~~~hviI~G~g~~g~~la~~L~~~~~~---vvvid~~~~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~a~~vi~t~~  201 (565)
T 4gx0_A          125 DTRGHILIFGIDPITRTLIRKLESRNHL---FVVVTDNYDQALHLEEQEGFKVVYGSPTDAHVLAGLRVAAARSIIANLS  201 (565)
T ss_dssp             TCCSCEEEESCCHHHHHHHHHTTTTTCC---EEEEESCHHHHHHHHHSCSSEEEESCTTCHHHHHHTTGGGCSEEEECSC
T ss_pred             ccCCeEEEECCChHHHHHHHHHHHCCCC---EEEEECCHHHHHHHHHhcCCeEEEeCCCCHHHHHhcCcccCCEEEEeCC


Q ss_pred             ----------------------------------------------------CCCCCCCccccccCCCCCCCCCCccccc
Q 013952           42 ----------------------------------------------------APYERPALSKAYLFPEGTARLPGFHVCV   69 (433)
Q Consensus        42 ----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~   69 (433)
                                                                          .....+......+.......+..+... 
T Consensus       202 D~~n~~~~~~ar~~~~~~iiar~~~~~~~~~l~~~Gad~vi~p~~~~~~~la~~~~~p~~~~~~~~~~~~~~l~e~~v~-  280 (565)
T 4gx0_A          202 DPDNANLCLTVRSLCQTPIIAVVKEPVHGELLRLAGANQVVPLTRILGRYLGIRATTCGALAHILDSFGNLQIAELPVH-  280 (565)
T ss_dssp             HHHHHHHHHHHHTTCCCCEEEECSSGGGHHHHHHHTCSEEECHHHHHHHHHHHHHHC-----------------------
T ss_pred             cHHHHHHHHHHHHhcCceEEEEECCHHHHHHHHHcCCCEEEChHHHHHHHHHHHhcccccccchhcccCCceEEEEEEC-


Q ss_pred             CCCCCCCCHhHHHhCCcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHH
Q 013952           70 GSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDD  149 (433)
Q Consensus        70 ~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~  149 (433)
                      +   .......+.+....-..+..+..+.++++.+.-.....++..-.++-.|...........-+...+          
T Consensus       281 ~---s~l~G~~l~el~~~~~~~~~vi~i~r~g~~~~p~~~~~l~~GD~L~v~g~~~~l~~~~~~~~~~~~----------  347 (565)
T 4gx0_A          281 G---TPFAGKTIGESGIRQRTGLSIIGVWERGSLTTPQRETVLTEQSLLVLAGTKSQLAALEYLIGEAPE----------  347 (565)
T ss_dssp             ---------------------------------------------------------------------C----------
T ss_pred             C---CccCCCCHHHcCcchhcCCEEEEEEECCEEeCCCCCcEeCCCCEEEEEeCHHHHHHHHHHhcCCCC----------


Q ss_pred             HHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCC
Q 013952          150 ADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR  200 (433)
Q Consensus       150 ~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~  200 (433)
                                 . ++++|+|.|..|..+|..|.+.|.+|++++..+.....
T Consensus       348 -----------~-~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~~~~  386 (565)
T 4gx0_A          348 -----------D-ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESPVCN  386 (565)
T ss_dssp             -----------C-CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCSSCC
T ss_pred             -----------C-CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHHHhh

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=92.79  E-value=0.11  Score=44.27  Aligned_cols=31  Identities=35%  Similarity=0.577  Sum_probs=29.1

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         7 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      +|+|||+|..|...|..|.+.|++   |+++|++
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~---v~vid~~   32 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYG---VVIINKD   32 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCC---EEEEESC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCe---EEEEECC
Confidence            699999999999999999999887   9999988

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=92.64  E-value=0.12  Score=50.51  Aligned_cols=61  Identities=20%  Similarity=0.228  Sum_probs=45.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCC-----------------CCHHHHHHHHHHHHhcCcEEEc
Q 013952          162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL-----------------FTADIAAFYEGYYANKGIKIIK  223 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~-----------------~~~~~~~~l~~~l~~~GV~v~~  223 (433)
                      ..+|+|||+|..|+-+|..|++.|.+|++++..+++..+.                 +... ...+.+.+++.|++...
T Consensus         4 ~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GGr~~t~~~~~g~~~d~G~~~~~~~-~~~~~~l~~~lgl~~~~   81 (520)
T 1s3e_A            4 KCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPT-QNRILRLAKELGLETYK   81 (520)
T ss_dssp             BCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCEECCTTTSCEESSCCEECTT-CHHHHHHHHHTTCCEEE
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCceeecccCCCcccccCceEecCC-cHHHHHHHHHcCCccee
Confidence            3589999999999999999999999999999876542210                 0111 34566778888987643

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=92.61  E-value=0.12  Score=47.84  Aligned_cols=33  Identities=27%  Similarity=0.452  Sum_probs=30.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccC
Q 013952          162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPE  194 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~  194 (433)
                      ...|+|||+|.+|+-+|..|++.|.+|+++++.
T Consensus         6 ~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~   38 (363)
T 1c0p_A            6 QKRVVVLGSGVIGLSSALILARKGYSVHILARD   38 (363)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCEEEEEecc
Confidence            357999999999999999999999999999864

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=92.56  E-value=0.12  Score=47.75  Aligned_cols=36  Identities=28%  Similarity=0.278  Sum_probs=29.4

Q ss_pred             CCCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ||+ +++|.|||+|..|...|..|++.|++   |++++++
T Consensus         1 mm~-~mki~iiG~G~~G~~~a~~L~~~g~~---V~~~~r~   36 (359)
T 1bg6_A            1 MIE-SKTYAVLGLGNGGHAFAAYLALKGQS---VLAWDID   36 (359)
T ss_dssp             ----CCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSC
T ss_pred             CCC-cCeEEEECCCHHHHHHHHHHHhCCCE---EEEEeCC
Confidence            664 46899999999999999999998876   8888776

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=92.47  E-value=0.11  Score=50.59  Aligned_cols=36  Identities=22%  Similarity=0.414  Sum_probs=32.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCC-CeEEEEccCCcc
Q 013952          162 NGKAVVVGGGYIGLELSAALKINN-IDVSMVYPEPWC  197 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g-~~V~li~~~~~~  197 (433)
                      ..+|+|||+|..|+-+|..|.+.| .+|++++..+++
T Consensus         8 ~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~ri   44 (516)
T 1rsg_A            8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRV   44 (516)
T ss_dssp             EEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCC
Confidence            358999999999999999999999 999999987654

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=92.46  E-value=0.12  Score=47.92  Aligned_cols=35  Identities=20%  Similarity=0.189  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc
Q 013952          162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC  197 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~  197 (433)
                      .+.|+|||+|.+|+-+|..|+ .|.+|+++++.+.+
T Consensus         9 ~~dv~IIGaGi~Gls~A~~La-~G~~V~vlE~~~~~   43 (381)
T 3nyc_A            9 EADYLVIGAGIAGASTGYWLS-AHGRVVVLEREAQP   43 (381)
T ss_dssp             ECSEEEECCSHHHHHHHHHHT-TTSCEEEECSSSST
T ss_pred             cCCEEEECCcHHHHHHHHHHh-CCCCEEEEECCCCc
Confidence            579999999999999999999 59999999987543

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=92.45  E-value=0.24  Score=44.75  Aligned_cols=83  Identities=19%  Similarity=0.197  Sum_probs=51.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEE
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVK  242 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~  242 (433)
                      .++.|||+|.+|.-+|..|.+.|.+|+++.|.+          .     +.+++.|+.+.....-..+..      ..+.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~----------~-----~~i~~~g~~~~~~~g~~~~~~------~~~~   61 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD----------Y-----EAIAGNGLKVFSINGDFTLPH------VKGY   61 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT----------H-----HHHHHTCEEEEETTCCEEESC------CCEE
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc----------H-----HHHHhCCCEEEcCCCeEEEee------ceee
Confidence            479999999999999999999999999997642          0     335677877643211001100      0111


Q ss_pred             eCCCc-EEECCEEEEcccCccChhhh
Q 013952          243 LKDGR-TLEADIVVVGVGGRPLISLF  267 (433)
Q Consensus       243 ~~~g~-~i~~d~vi~a~G~~p~~~~~  267 (433)
                       .+-+ .-.+|.||+|+-.....+.+
T Consensus        62 -~~~~~~~~~D~vilavk~~~~~~~l   86 (312)
T 3hn2_A           62 -RAPEEIGPMDLVLVGLKTFANSRYE   86 (312)
T ss_dssp             -SCHHHHCCCSEEEECCCGGGGGGHH
T ss_pred             -cCHHHcCCCCEEEEecCCCCcHHHH
Confidence             1111 12589999998866554444

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=92.40  E-value=0.2  Score=39.73  Aligned_cols=34  Identities=12%  Similarity=0.234  Sum_probs=30.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccC
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE  194 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~  194 (433)
                      ..++++|+|+|.+|..++..|.+.|.+|+++++.
T Consensus         2 ~~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~   35 (153)
T 1id1_A            2 RKDHFIVCGHSILAINTILQLNQRGQNVTVISNL   35 (153)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Confidence            3578999999999999999999999999999864

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=92.36  E-value=0.067  Score=47.10  Aligned_cols=33  Identities=21%  Similarity=0.411  Sum_probs=30.7

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      .+.|+|||||..|...+..|.+.|.+   |+|++++
T Consensus        13 ~k~VLVVGgG~va~rka~~Ll~~Ga~---VtViap~   45 (274)
T 1kyq_A           13 DKRILLIGGGEVGLTRLYKLMPTGCK---LTLVSPD   45 (274)
T ss_dssp             TCEEEEEEESHHHHHHHHHHGGGTCE---EEEEEEE
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCE---EEEEcCC
Confidence            47899999999999999999999977   9999988

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=92.33  E-value=0.09  Score=50.10  Aligned_cols=129  Identities=13%  Similarity=0.171  Sum_probs=76.6

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHh
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   83 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (433)
                      .++|.|||.|.+|+++|+.|+++|++   |++.|.. ..+                                 ....++ 
T Consensus         5 ~~~v~viG~G~~G~~~a~~l~~~G~~---v~~~D~~~~~~---------------------------------~~~~l~-   47 (439)
T 2x5o_A            5 GKNVVIIGLGLTGLSCVDFFLARGVT---PRVMDTRMTPP---------------------------------GLDKLP-   47 (439)
T ss_dssp             TCCEEEECCHHHHHHHHHHHHTTTCC---CEEEESSSSCT---------------------------------TGGGSC-
T ss_pred             CCEEEEEeecHHHHHHHHHHHhCCCE---EEEEECCCCcc---------------------------------hhHHhh-
Confidence            46899999999999999999999987   8998887 110                                 012233 


Q ss_pred             CCcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCC
Q 013952           84 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNG  163 (433)
Q Consensus        84 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~  163 (433)
                      .|+++..+...      ...  +    . .+|.+|+++|..+..|.   +......++-.+...+   .+...   .+.+
T Consensus        48 ~G~~~~~g~~~------~~~--~----~-~~d~vV~s~gi~~~~p~---~~~a~~~~~~v~~~~~---~~~~~---~~~~  105 (439)
T 2x5o_A           48 EAVERHTGSLN------DEW--L----M-AADLIVASPGIALAHPS---LSAAADAGIEIVGDIE---LFCRE---AQAP  105 (439)
T ss_dssp             TTSCEEESSCC------HHH--H----H-TCSEEEECTTSCTTCHH---HHHHHHTTCEEECHHH---HHHHH---CCSC
T ss_pred             CCCEEEECCCc------HHH--h----c-cCCEEEeCCCCCCCCHH---HHHHHHCCCcEEEHHH---HHHHh---cCCC
Confidence            56666655311      000  0    1 47899999997654443   2221112222222222   22222   2455


Q ss_pred             cEEEECCC---HHHHHHHHHHHhCCCeEEEEc
Q 013952          164 KAVVVGGG---YIGLELSAALKINNIDVSMVY  192 (433)
Q Consensus       164 ~v~ViG~G---~~g~e~a~~l~~~g~~V~li~  192 (433)
                      .+.|-|+.   -+...++..|...|.++.+..
T Consensus       106 vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~~g  137 (439)
T 2x5o_A          106 IVAITGSNGKSTVTTLVGEMAKAAGVNVGVGG  137 (439)
T ss_dssp             EEEEECSSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHHhcCCCEEEec
Confidence            67777753   455667778888888876543

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=92.32  E-value=0.13  Score=49.47  Aligned_cols=37  Identities=24%  Similarity=0.384  Sum_probs=32.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC  197 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~  197 (433)
                      ...+|+|||+|..|+-+|..|++.|.+|+++++.+++
T Consensus        15 ~~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~   51 (478)
T 2ivd_A           15 TGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARL   51 (478)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCC
Confidence            3568999999999999999999999999999987754

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=92.10  E-value=0.17  Score=46.68  Aligned_cols=37  Identities=30%  Similarity=0.306  Sum_probs=30.9

Q ss_pred             CCCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      |.+..++|.|||+|.-|.+.|..|++.|++   |++++++
T Consensus        25 m~~~~mkI~VIGaG~mG~alA~~La~~G~~---V~l~~r~   61 (356)
T 3k96_A           25 MEPFKHPIAILGAGSWGTALALVLARKGQK---VRLWSYE   61 (356)
T ss_dssp             --CCCSCEEEECCSHHHHHHHHHHHTTTCC---EEEECSC
T ss_pred             ccccCCeEEEECccHHHHHHHHHHHHCCCe---EEEEeCC
Confidence            333456899999999999999999999987   9998876

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=92.07  E-value=0.071  Score=51.14  Aligned_cols=35  Identities=23%  Similarity=0.501  Sum_probs=32.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCC------CeEEEEccCCcc
Q 013952          163 GKAVVVGGGYIGLELSAALKINN------IDVSMVYPEPWC  197 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g------~~V~li~~~~~~  197 (433)
                      ++|+|||+|.+|+-+|..|++.|      .+|+++++.+++
T Consensus         6 ~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~   46 (470)
T 3i6d_A            6 KHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRV   46 (470)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCC
Confidence            58999999999999999999999      999999987654

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=91.87  E-value=0.48  Score=42.82  Aligned_cols=31  Identities=19%  Similarity=0.356  Sum_probs=28.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEE
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMV  191 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li  191 (433)
                      ...++.|||+|..|.-+|..|++.|.+|+++
T Consensus        18 ~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~   48 (318)
T 3hwr_A           18 QGMKVAIMGAGAVGCYYGGMLARAGHEVILI   48 (318)
T ss_dssp             --CEEEEESCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHCCCeEEEE
Confidence            4679999999999999999999999999998

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=91.85  E-value=0.17  Score=49.14  Aligned_cols=36  Identities=28%  Similarity=0.443  Sum_probs=33.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc
Q 013952          162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC  197 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~  197 (433)
                      ..+|+|||+|..|+-+|..|.+.|.+|+++++.+++
T Consensus        13 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~   48 (504)
T 1sez_A           13 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKA   48 (504)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCC
Confidence            468999999999999999999999999999987664

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=91.84  E-value=0.17  Score=48.28  Aligned_cols=34  Identities=21%  Similarity=0.247  Sum_probs=31.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW  196 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~  196 (433)
                      ..|+|||+|..|+.+|..|++.|.+|+++++.+.
T Consensus        27 ~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~   60 (447)
T 2i0z_A           27 YDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNK   60 (447)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            4799999999999999999999999999998754

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=91.81  E-value=0.19  Score=45.11  Aligned_cols=33  Identities=18%  Similarity=0.341  Sum_probs=29.9

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ..+|.|||+|.-|...|..|++.|++   |+++|++
T Consensus        15 ~~~I~VIG~G~mG~~iA~~la~~G~~---V~~~d~~   47 (302)
T 1f0y_A           15 VKHVTVIGGGLMGAGIAQVAAATGHT---VVLVDQT   47 (302)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCe---EEEEECC
Confidence            45799999999999999999999986   9999887

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=91.78  E-value=0.16  Score=48.16  Aligned_cols=35  Identities=23%  Similarity=0.388  Sum_probs=31.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccCCc
Q 013952          162 NGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPW  196 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g~-~V~li~~~~~  196 (433)
                      ...|+|||+|..|+-+|..|++.|. +|+++++.+.
T Consensus         6 ~~dVvIIGgG~aGlsaA~~La~~G~~~V~vlE~~~~   41 (438)
T 3dje_A            6 SSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPV   41 (438)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSCS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence            3579999999999999999999999 9999988654

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=91.77  E-value=0.16  Score=47.34  Aligned_cols=35  Identities=20%  Similarity=0.353  Sum_probs=31.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC  197 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~  197 (433)
                      .+++|||+|.+|+.+|..|.+.|.+|+++++.+.+
T Consensus         4 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~   38 (384)
T 2bi7_A            4 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHI   38 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCc
Confidence            48999999999999999999999999999886543

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=91.68  E-value=0.18  Score=46.40  Aligned_cols=34  Identities=21%  Similarity=0.309  Sum_probs=30.7

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ..+|+|+|+|.+|..+|..|...|.+  +|+++|++
T Consensus       192 ~~kVVv~GAGaAG~~iAkll~~~G~~--~I~v~Dr~  225 (388)
T 1vl6_A          192 EVKVVVNGIGAAGYNIVKFLLDLGVK--NVVAVDRK  225 (388)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCC--EEEEEETT
T ss_pred             CcEEEEECCCHHHHHHHHHHHhCCCC--eEEEEECC
Confidence            46899999999999999999999963  49999998

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=91.65  E-value=0.19  Score=45.51  Aligned_cols=37  Identities=16%  Similarity=0.266  Sum_probs=30.9

Q ss_pred             CCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         2 m~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      |.+..+|.|||+|.-|.+.|..|++.|+.  +|+++|.+
T Consensus         1 M~~~~kI~VIGaG~~G~~ia~~la~~g~~--~V~l~D~~   37 (317)
T 2ewd_A            1 MIERRKIAVIGSGQIGGNIAYIVGKDNLA--DVVLFDIA   37 (317)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHHHTCC--EEEEECSS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCc--eEEEEeCC
Confidence            33456899999999999999999998871  29999887

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=91.60  E-value=0.18  Score=48.18  Aligned_cols=35  Identities=23%  Similarity=0.396  Sum_probs=31.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC  197 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~  197 (433)
                      .+|+|||+|..|+-+|..|.+.|.+|+++++.+++
T Consensus         6 ~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~   40 (453)
T 2yg5_A            6 RDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRV   40 (453)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence            47999999999999999999999999999886543

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=91.54  E-value=0.18  Score=46.44  Aligned_cols=34  Identities=21%  Similarity=0.389  Sum_probs=30.7

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ..+|||+|+|.||+.+|..|...|.+  +|+++|++
T Consensus       188 d~kVVi~GAGaAG~~iA~ll~~~Ga~--~I~v~D~~  221 (398)
T 2a9f_A          188 EVSIVVNGGGSAGLSITRKLLAAGAT--KVTVVDKF  221 (398)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCC--EEEEEETT
T ss_pred             ccEEEEECCCHHHHHHHHHHHHcCCC--eEEEEECC
Confidence            46899999999999999999999973  49999998

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=91.54  E-value=0.19  Score=46.99  Aligned_cols=35  Identities=26%  Similarity=0.368  Sum_probs=31.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc
Q 013952          162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW  196 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~  196 (433)
                      ..+++|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus        29 ~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~   63 (397)
T 3hdq_A           29 GFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPH   63 (397)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCceEEEeccCC
Confidence            34799999999999999999999999999997654

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=91.54  E-value=0.14  Score=47.95  Aligned_cols=33  Identities=27%  Similarity=0.320  Sum_probs=30.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHh-CC-CeEEEEccCC
Q 013952          163 GKAVVVGGGYIGLELSAALKI-NN-IDVSMVYPEP  195 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~-~g-~~V~li~~~~  195 (433)
                      ..|+|||+|..|+.+|..|++ .| .+|+++++.+
T Consensus        22 ~dVvIIG~G~~Gl~~A~~La~~~G~~~V~vlE~~~   56 (405)
T 2gag_B           22 YDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGW   56 (405)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHCCCCEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence            479999999999999999999 89 9999999865

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}

Probab=91.53  E-value=0.33  Score=47.27  Aligned_cols=79  Identities=14%  Similarity=0.125  Sum_probs=56.6

Q ss_pred             CCCcEEEECCCHHHHH-HHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEE
Q 013952          161 KNGKAVVVGGGYIGLE-LSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVK  239 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e-~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~  239 (433)
                      +.+++.+||-|-+|+- +|..|.+.|.+|+..+....      ++     ..+.|++.||+++.+.....+         
T Consensus        18 ~~~~i~~iGiGg~Gms~lA~~l~~~G~~V~~sD~~~~------~~-----~~~~L~~~gi~~~~G~~~~~~---------   77 (524)
T 3hn7_A           18 QGMHIHILGICGTFMGSLALLARALGHTVTGSDANIY------PP-----MSTQLEQAGVTIEEGYLIAHL---------   77 (524)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC------TT-----HHHHHHHTTCEEEESCCGGGG---------
T ss_pred             cCCEEEEEEecHhhHHHHHHHHHhCCCEEEEECCCCC------cH-----HHHHHHHCCCEEECCCCHHHc---------
Confidence            5789999999999997 68889999999999886532      11     234577889998765321111         


Q ss_pred             EEEeCCCcEEECCEEEEcccCccChhhh
Q 013952          240 EVKLKDGRTLEADIVVVGVGGRPLISLF  267 (433)
Q Consensus       240 ~v~~~~g~~i~~d~vi~a~G~~p~~~~~  267 (433)
                              .-.+|.||+++|..|....+
T Consensus        78 --------~~~~d~vV~Spgi~~~~p~l   97 (524)
T 3hn7_A           78 --------QPAPDLVVVGNAMKRGMDVI   97 (524)
T ss_dssp             --------CSCCSEEEECTTCCTTSHHH
T ss_pred             --------CCCCCEEEECCCcCCCCHHH
Confidence                    01378999999987766544

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=91.48  E-value=0.18  Score=46.94  Aligned_cols=33  Identities=18%  Similarity=0.251  Sum_probs=30.0

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ..+|+|||+|.+|+.+|..|+..|.+   |+++|..
T Consensus       190 ~~kV~ViG~G~iG~~aa~~a~~lGa~---V~v~D~~  222 (405)
T 4dio_A          190 AAKIFVMGAGVAGLQAIATARRLGAV---VSATDVR  222 (405)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCE---EEEEcCC
Confidence            46899999999999999999999976   9999887

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=91.47  E-value=0.2  Score=49.34  Aligned_cols=34  Identities=24%  Similarity=0.393  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHh---CCCeEEEEccCC
Q 013952          162 NGKAVVVGGGYIGLELSAALKI---NNIDVSMVYPEP  195 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~---~g~~V~li~~~~  195 (433)
                      ..+|+|||+|..|+-+|..|++   .|.+|+++++.+
T Consensus        25 ~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~   61 (550)
T 2e4g_A           25 IDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPD   61 (550)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCC
Confidence            4689999999999999999999   999999999864

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=91.44  E-value=0.27  Score=44.42  Aligned_cols=37  Identities=16%  Similarity=0.228  Sum_probs=31.1

Q ss_pred             CCCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ||+...+|.|||+|.-|...|..|.+.|++   |++++++
T Consensus        26 ~~~~~~~I~iIG~G~mG~~~a~~l~~~g~~---V~~~~~~   62 (316)
T 2uyy_A           26 ITPTDKKIGFLGLGLMGSGIVSNLLKMGHT---VTVWNRT   62 (316)
T ss_dssp             CCCCSSCEEEECCSHHHHHHHHHHHHTTCC---EEEECSS
T ss_pred             CCCCCCeEEEEcccHHHHHHHHHHHhCCCE---EEEEeCC
Confidence            344457899999999999999999998876   8888776

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=91.38  E-value=0.2  Score=50.81  Aligned_cols=33  Identities=18%  Similarity=0.357  Sum_probs=31.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEP  195 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~  195 (433)
                      ..|+|||+|..|+-+|..|++.|.+|+++++.+
T Consensus       265 ~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~  297 (689)
T 3pvc_A          265 DDIAIIGGGIVSALTALALQRRGAVVTLYCADA  297 (689)
T ss_dssp             SSEEEECCSHHHHHHHHHHHTTTCCEEEEESSS
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            589999999999999999999999999999864

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=91.34  E-value=0.22  Score=45.10  Aligned_cols=35  Identities=17%  Similarity=0.343  Sum_probs=29.9

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ...+|.|||+|..|...|..|+..|+-  +|+++|.+
T Consensus         3 ~~~kI~VIGaG~vG~~ia~~la~~g~~--~v~L~Di~   37 (322)
T 1t2d_A            3 PKAKIVLVGSGMIGGVMATLIVQKNLG--DVVLFDIV   37 (322)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCC--EEEEECSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCC--eEEEEeCC
Confidence            346899999999999999999998871  29999877

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=91.32  E-value=0.18  Score=48.71  Aligned_cols=36  Identities=22%  Similarity=0.442  Sum_probs=32.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc
Q 013952          162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC  197 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~  197 (433)
                      ..+|+|||+|..|+-+|..|.+.|.+|++++..+++
T Consensus        39 ~~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~~   74 (495)
T 2vvm_A           39 PWDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRI   74 (495)
T ss_dssp             CEEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSBS
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            358999999999999999999999999999987654

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=91.29  E-value=0.15  Score=43.45  Aligned_cols=33  Identities=24%  Similarity=0.362  Sum_probs=28.4

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEE-EcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAI-ISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~l-ie~~   40 (433)
                      +++|.|||+|.-|.+.|..|.+.|++   |++ .+++
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~g~~---V~~v~~r~   56 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAAQIP---AIIANSRG   56 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHTTCC---EEEECTTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCE---EEEEECCC
Confidence            46899999999999999999998876   777 6555

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=91.28  E-value=0.2  Score=50.65  Aligned_cols=33  Identities=27%  Similarity=0.394  Sum_probs=30.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEP  195 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~  195 (433)
                      ..|+|||+|..|+-+|..|++.|.+|+++++.+
T Consensus       273 ~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~  305 (676)
T 3ps9_A          273 REAAIIGGGIASALLSLALLRRGWQVTLYCADE  305 (676)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            589999999999999999999999999999854

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=91.25  E-value=0.23  Score=47.72  Aligned_cols=37  Identities=16%  Similarity=0.208  Sum_probs=31.2

Q ss_pred             CCCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      |+|+..+|.|||+|.-|...|..|++.|++   |+++|.+
T Consensus         1 Msm~~~kVgVIGaG~MG~~IA~~la~aG~~---V~l~D~~   37 (483)
T 3mog_A            1 MSLNVQTVAVIGSGTMGAGIAEVAASHGHQ---VLLYDIS   37 (483)
T ss_dssp             ---CCCCEEEECCSHHHHHHHHHHHHTTCC---EEEECSC
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHHHHCCCe---EEEEECC
Confidence            554567899999999999999999999987   9999887

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=91.25  E-value=0.22  Score=38.82  Aligned_cols=33  Identities=21%  Similarity=0.211  Sum_probs=30.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccC
Q 013952          162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPE  194 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~  194 (433)
                      .++++|+|+|.+|..++..|.+.|.+|+++++.
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~   38 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKS   38 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECC
Confidence            468999999999999999999999999999753

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=91.20  E-value=0.14  Score=47.06  Aligned_cols=32  Identities=25%  Similarity=0.456  Sum_probs=29.4

Q ss_pred             cEEEECCCHHHHHHHHHHHhCC------CeEEEEccCC
Q 013952          164 KAVVVGGGYIGLELSAALKINN------IDVSMVYPEP  195 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g------~~V~li~~~~  195 (433)
                      .|+|||+|.+|+-+|..|++.|      .+|+++++..
T Consensus         2 dVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~   39 (351)
T 3g3e_A            2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRF   39 (351)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSC
T ss_pred             cEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCC
Confidence            6899999999999999999998      8999998764

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=91.14  E-value=0.22  Score=38.82  Aligned_cols=77  Identities=17%  Similarity=0.234  Sum_probs=50.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEE
Q 013952          162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEV  241 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v  241 (433)
                      .++++|+|.|..|..++..|.+.|.+|+++++.         ++..+    .+++.|+.++.+..-       +..  .+
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~---------~~~~~----~~~~~g~~~i~gd~~-------~~~--~l   64 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETS---------RTRVD----ELRERGVRAVLGNAA-------NEE--IM   64 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESC---------HHHHH----HHHHTTCEEEESCTT-------SHH--HH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECC---------HHHHH----HHHHcCCCEEECCCC-------CHH--HH
Confidence            468999999999999999999999999999864         33222    244567776543210       000  00


Q ss_pred             EeCCCcEEECCEEEEcccCcc
Q 013952          242 KLKDGRTLEADIVVVGVGGRP  262 (433)
Q Consensus       242 ~~~~g~~i~~d~vi~a~G~~p  262 (433)
                      . .-+ .-.+|.+|++++...
T Consensus        65 ~-~a~-i~~ad~vi~~~~~~~   83 (140)
T 3fwz_A           65 Q-LAH-LECAKWLILTIPNGY   83 (140)
T ss_dssp             H-HTT-GGGCSEEEECCSCHH
T ss_pred             H-hcC-cccCCEEEEECCChH
Confidence            0 011 125899999998654

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=91.05  E-value=0.25  Score=44.96  Aligned_cols=32  Identities=16%  Similarity=0.225  Sum_probs=29.2

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCC-CCCcEEEEcCC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGV-KPGELAIISKE   40 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~-~~~~V~lie~~   40 (433)
                      .+|.|||+|..|.+.|..|++.|+ +   |+++|.+
T Consensus        10 ~kI~VIGaG~vG~~lA~~la~~g~~~---V~L~D~~   42 (331)
T 1pzg_A           10 KKVAMIGSGMIGGTMGYLCALRELAD---VVLYDVV   42 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCE---EEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCe---EEEEECC
Confidence            589999999999999999999886 4   9999887

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=91.03  E-value=0.22  Score=45.89  Aligned_cols=33  Identities=21%  Similarity=0.162  Sum_probs=30.0

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ..+|+|||+|..|+.+|..|+..|.+   |+++|++
T Consensus       184 ~~kV~ViG~G~iG~~aa~~a~~lGa~---V~v~D~~  216 (381)
T 3p2y_A          184 PASALVLGVGVAGLQALATAKRLGAK---TTGYDVR  216 (381)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHHTCE---EEEECSS
T ss_pred             CCEEEEECchHHHHHHHHHHHHCCCE---EEEEeCC
Confidence            46899999999999999999999975   9999887

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=91.02  E-value=0.22  Score=46.75  Aligned_cols=36  Identities=22%  Similarity=0.402  Sum_probs=32.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhC-CCeEEEEccCCcc
Q 013952          162 NGKAVVVGGGYIGLELSAALKIN-NIDVSMVYPEPWC  197 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~-g~~V~li~~~~~~  197 (433)
                      ..+++|||+|..|+-+|..|++. |.+|++++..+++
T Consensus         7 ~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~   43 (399)
T 1v0j_A            7 RFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHI   43 (399)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            35899999999999999999998 9999999877543

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=91.00  E-value=0.26  Score=42.83  Aligned_cols=34  Identities=26%  Similarity=0.401  Sum_probs=30.4

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ..+|+|||+|..|..+|..|++.|.  ++++++|.+
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~Gv--~~i~lvD~d   64 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASAGV--GNLTLLDFD   64 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTC--SEEEEECCC
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHcCC--CeEEEEcCC
Confidence            3689999999999999999999995  349999998

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=90.99  E-value=0.22  Score=45.13  Aligned_cols=32  Identities=19%  Similarity=0.467  Sum_probs=28.9

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ++|.|||+|.-|.+.|..|++.|.+   |++++++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~---V~~~~r~   34 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHC---VSVVSRS   34 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCE---EEEECST
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCe---EEEEeCC
Confidence            4899999999999999999998876   9998776

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=90.78  E-value=0.23  Score=49.02  Aligned_cols=34  Identities=15%  Similarity=0.347  Sum_probs=31.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Q 013952          162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP  195 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~  195 (433)
                      ...|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus        32 ~~DVvVIGgGi~G~~~A~~La~rG~~V~LlE~~~   65 (571)
T 2rgh_A           32 ELDLLIIGGGITGAGVAVQAAASGIKTGLIEMQD   65 (571)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            4689999999999999999999999999998764

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=90.75  E-value=0.31  Score=45.02  Aligned_cols=32  Identities=25%  Similarity=0.326  Sum_probs=29.9

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ++|+|||||..|..+++.+++.|++   ++++|.+
T Consensus         2 K~I~ilGgg~~g~~~~~~Ak~~G~~---vv~vd~~   33 (363)
T 4ffl_A            2 KTICLVGGKLQGFEAAYLSKKAGMK---VVLVDKN   33 (363)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCE---EEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCE---EEEEeCC
Confidence            5899999999999999999999998   8999887

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=90.75  E-value=0.18  Score=44.41  Aligned_cols=34  Identities=26%  Similarity=0.539  Sum_probs=31.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccC
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE  194 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~  194 (433)
                      .+++|+|||+|.+|...+..|.+.|.+|+++.+.
T Consensus        12 ~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~   45 (274)
T 1kyq_A           12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (274)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCC
Confidence            5789999999999999999999999999999864

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=90.74  E-value=0.25  Score=45.53  Aligned_cols=36  Identities=17%  Similarity=0.185  Sum_probs=30.2

Q ss_pred             CCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         2 m~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      |++.++|.|||.|.-|...|..|++.|++   |++++++
T Consensus        19 Mm~~mkIgiIGlG~mG~~~A~~L~~~G~~---V~v~dr~   54 (358)
T 4e21_A           19 YFQSMQIGMIGLGRMGADMVRRLRKGGHE---CVVYDLN   54 (358)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSC
T ss_pred             hhcCCEEEEECchHHHHHHHHHHHhCCCE---EEEEeCC
Confidence            44567999999999999999999999986   8888877

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=90.69  E-value=0.22  Score=44.89  Aligned_cols=32  Identities=16%  Similarity=0.377  Sum_probs=28.4

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ++|.|||+|.-|.+.|..|++.|.+   |++++++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~---V~~~~r~   34 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGED---VHFLLRR   34 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCC---EEEECST
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCe---EEEEEcC
Confidence            4799999999999999999999876   9988776

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=90.53  E-value=0.23  Score=45.98  Aligned_cols=33  Identities=24%  Similarity=0.315  Sum_probs=30.2

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc
Q 013952          164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPW  196 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~  196 (433)
                      +++|||+|..|+-+|..|++.|.+|++++..+.
T Consensus         3 ~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~   35 (367)
T 1i8t_A            3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNH   35 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            689999999999999999999999999987653

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=90.52  E-value=0.34  Score=37.41  Aligned_cols=32  Identities=19%  Similarity=0.317  Sum_probs=28.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEcc
Q 013952          162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYP  193 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~  193 (433)
                      ..+++|+|+|.+|..++..|.+.|.+|+++++
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~   35 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDI   35 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEC
Confidence            35899999999999999999999999999875

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=90.49  E-value=0.28  Score=49.39  Aligned_cols=36  Identities=28%  Similarity=0.526  Sum_probs=32.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW  196 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~  196 (433)
                      ..++|+|||+|..|+.+|..|.+.|.+|+++++.++
T Consensus       106 ~~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~  141 (662)
T 2z3y_A          106 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDR  141 (662)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            367999999999999999999999999999987643

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=90.48  E-value=0.21  Score=47.94  Aligned_cols=36  Identities=19%  Similarity=0.348  Sum_probs=32.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCC--CeEEEEccCCcc
Q 013952          162 NGKAVVVGGGYIGLELSAALKINN--IDVSMVYPEPWC  197 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g--~~V~li~~~~~~  197 (433)
                      ..+|+|||+|.+|+-+|..|.+.|  .+|+++++.+.+
T Consensus         4 ~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~   41 (475)
T 3lov_A            4 SKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERL   41 (475)
T ss_dssp             SCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSS
T ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCC
Confidence            358999999999999999999999  999999986553

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=90.48  E-value=0.31  Score=44.50  Aligned_cols=33  Identities=21%  Similarity=0.487  Sum_probs=29.2

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      .++|.|||+|.-|.+.|..|++.|.+   |++++++
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~~---V~~~~r~   35 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGEA---INVLARG   35 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTCC---EEEECCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCE---EEEEECh
Confidence            45899999999999999999999876   8888765

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=90.34  E-value=0.2  Score=45.15  Aligned_cols=35  Identities=23%  Similarity=0.436  Sum_probs=31.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc
Q 013952          162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW  196 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~  196 (433)
                      .++|.|||+|..|.-+|..++..|.+|++++..+.
T Consensus         6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~   40 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPR   40 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHH
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            57899999999999999999999999999987654

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=90.34  E-value=0.3  Score=50.46  Aligned_cols=35  Identities=26%  Similarity=0.510  Sum_probs=31.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc
Q 013952          162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW  196 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~  196 (433)
                      .++|+|||+|..|+.+|..|.+.|.+|++++..++
T Consensus       278 ~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~  312 (852)
T 2xag_A          278 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDR  312 (852)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCc
Confidence            46899999999999999999999999999987643

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=90.32  E-value=0.17  Score=49.30  Aligned_cols=33  Identities=36%  Similarity=0.541  Sum_probs=29.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHh---CCCeEEEEccCC
Q 013952          163 GKAVVVGGGYIGLELSAALKI---NNIDVSMVYPEP  195 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~---~g~~V~li~~~~  195 (433)
                      .+|+|||+|..|+-+|..|++   .|.+|+++++.+
T Consensus         3 ~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~~~   38 (511)
T 2weu_A            3 RSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGN   38 (511)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC--
T ss_pred             ceEEEECCCHHHHHHHHHHHhhcCCCCEEEEEecCC
Confidence            479999999999999999999   999999998764

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=90.30  E-value=0.32  Score=37.78  Aligned_cols=34  Identities=26%  Similarity=0.236  Sum_probs=29.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccC
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE  194 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~  194 (433)
                      ..++++|+|+|.+|..++..|.+.|.+|+++++.
T Consensus         5 ~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~   38 (144)
T 2hmt_A            5 KNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDIN   38 (144)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESC
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            3578999999999999999999999999988753

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=90.28  E-value=0.28  Score=44.16  Aligned_cols=32  Identities=19%  Similarity=0.282  Sum_probs=28.8

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ++|.|||+|.-|...|..|++.|++   |++++++
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~---V~~~~r~   35 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGND---VTLIDQW   35 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCE---EEEECSC
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCc---EEEEECC
Confidence            4799999999999999999998876   8988776

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=90.26  E-value=0.21  Score=44.66  Aligned_cols=33  Identities=12%  Similarity=0.078  Sum_probs=30.0

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      +.+|.|||.|.-|...|..|++.|++   |++++++
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~---V~~~dr~   47 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGG---VTVYDIR   47 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTC---EEEECSS
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCe---EEEEeCC
Confidence            46899999999999999999999987   9998877

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=90.22  E-value=0.71  Score=41.45  Aligned_cols=74  Identities=24%  Similarity=0.298  Sum_probs=0.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEE
Q 013952          162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEV  241 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v  241 (433)
                      ..+++|||+|.+|.-+|..|. .|.+|+++.|.+             .-.+.+++.|+.+......   ..      ..+
T Consensus         2 ~mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~-------------~~~~~l~~~G~~~~~~~~~---~~------~~~   58 (307)
T 3ego_A            2 SLKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQ-------------EQAAAIQSEGIRLYKGGEE---FR------ADC   58 (307)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH-------------HHHHHHHHHCEEEEETTEE---EE------ECC
T ss_pred             CCEEEEECCCHHHHHHHHHHh-cCCceEEEECCH-------------HHHHHHHhCCceEecCCCe---ec------ccc


Q ss_pred             EeCCCcEEECCEEEEcc
Q 013952          242 KLKDGRTLEADIVVVGV  258 (433)
Q Consensus       242 ~~~~g~~i~~d~vi~a~  258 (433)
                      .......-.+|.||+|+
T Consensus        59 ~~~~~~~~~~D~vilav   75 (307)
T 3ego_A           59 SADTSINSDFDLLVVTV   75 (307)
T ss_dssp             EEESSCCSCCSEEEECC
T ss_pred             cccccccCCCCEEEEEe

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=90.18  E-value=0.3  Score=36.42  Aligned_cols=33  Identities=30%  Similarity=0.409  Sum_probs=29.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCC-CeEEEEccC
Q 013952          162 NGKAVVVGGGYIGLELSAALKINN-IDVSMVYPE  194 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g-~~V~li~~~  194 (433)
                      .++++|+|+|.+|..++..|.+.| .+|+++.+.
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~   38 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHD   38 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESC
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCC
Confidence            468999999999999999999999 888888764

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=90.16  E-value=0.26  Score=44.08  Aligned_cols=32  Identities=19%  Similarity=0.283  Sum_probs=28.8

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ++|.|||+|.-|.+.|..|++.|.+   |++++++
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~---V~~~~r~   34 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPH---TTLIGRH   34 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTT---CEEEESS
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCe---EEEEEec
Confidence            4799999999999999999999876   8998877

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=90.15  E-value=0.46  Score=42.94  Aligned_cols=92  Identities=14%  Similarity=0.092  Sum_probs=0.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCC-CeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcC-CeEEEEEecCCCcEEE
Q 013952          163 GKAVVVGGGYIGLELSAALKINN-IDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKG-TVAVGFTTNADGEVKE  240 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g-~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~-~~v~~i~~~~~g~~~~  240 (433)
                      .++.|||.|..|.-+|..|.+.| .+|+++++.+.....      .+...+.+.+.|+   .. +....+..        
T Consensus        25 m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~------~~~~~~~~~~~g~---~~~s~~e~~~~--------   87 (317)
T 4ezb_A           25 TTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAA------SGALRARAAELGV---EPLDDVAGIAC--------   87 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTT------HHHHHHHHHHTTC---EEESSGGGGGG--------
T ss_pred             CeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccc------hHHHHHHHHHCCC---CCCCHHHHHhc--------


Q ss_pred             EEeCCCcEEECCEEEEcccCccChhhhhccccc-CCCcEEeC
Q 013952          241 VKLKDGRTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETD  281 (433)
Q Consensus       241 v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd  281 (433)
                                +|.||+|++.....+.+..-... ..+.+.+|
T Consensus        88 ----------aDvVi~avp~~~~~~~~~~i~~~l~~~~ivv~  119 (317)
T 4ezb_A           88 ----------ADVVLSLVVGAATKAVAASAAPHLSDEAVFID  119 (317)
T ss_dssp             ----------CSEEEECCCGGGHHHHHHHHGGGCCTTCEEEE
T ss_pred             ----------CCEEEEecCCHHHHHHHHHHHhhcCCCCEEEE

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=89.75  E-value=0.43  Score=43.13  Aligned_cols=36  Identities=31%  Similarity=0.415  Sum_probs=30.3

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      +..+|+|||+|..|.+.|..|+..++ ..++.++|.+
T Consensus         5 ~~~KI~IIGaG~vG~~la~~l~~~~~-~~ei~L~Di~   40 (317)
T 3d0o_A            5 KGNKVVLIGNGAVGSSYAFSLVNQSI-VDELVIIDLD   40 (317)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCS-CSEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-CCEEEEEeCC
Confidence            34699999999999999999998875 3468898866

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=89.70  E-value=0.39  Score=42.65  Aligned_cols=34  Identities=24%  Similarity=0.470  Sum_probs=30.9

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ..+|+|||+|-.|-.+|.+|++.|.  ++++|+|.+
T Consensus        36 ~~~VlVvGaGGlGs~va~~La~aGV--G~i~lvD~D   69 (292)
T 3h8v_A           36 TFAVAIVGVGGVGSVTAEMLTRCGI--GKLLLFDYD   69 (292)
T ss_dssp             GCEEEEECCSHHHHHHHHHHHHHTC--SEEEEECCC
T ss_pred             CCeEEEECcCHHHHHHHHHHHHcCC--CEEEEECCC
Confidence            4689999999999999999999994  569999998

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=89.69  E-value=0.45  Score=43.00  Aligned_cols=38  Identities=26%  Similarity=0.373  Sum_probs=31.8

Q ss_pred             CCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         2 m~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      |++..+|.|||+|..|.+.|..|...++ ..++.++|..
T Consensus         2 ~~~~~KI~IiGaG~vG~~~a~~l~~~~~-~~el~L~Di~   39 (318)
T 1ez4_A            2 MPNHQKVVLVGDGAVGSSYAFAMAQQGI-AEEFVIVDVV   39 (318)
T ss_dssp             BTTBCEEEEECCSHHHHHHHHHHHHHTC-CSEEEEECSS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHcCCC-CCEEEEEeCC
Confidence            4455799999999999999999998876 4568898876

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=89.57  E-value=0.3  Score=48.08  Aligned_cols=34  Identities=21%  Similarity=0.394  Sum_probs=31.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Q 013952          162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP  195 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~  195 (433)
                      .-.|+|||+|..|+-+|..|++.|.+|.++++.+
T Consensus        18 ~~DVvVIGgGi~Gl~~A~~La~~G~~V~LlEk~d   51 (561)
T 3da1_A           18 QLDLLVIGGGITGAGIALDAQVRGIQTGLVEMND   51 (561)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEECCC
Confidence            3579999999999999999999999999999863

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=89.50  E-value=0.34  Score=45.39  Aligned_cols=33  Identities=18%  Similarity=0.237  Sum_probs=29.5

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ..+|+|||+|.+|+.+|..|+..|.+   |+++|.+
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga~---V~v~D~~  204 (401)
T 1x13_A          172 PAKVMVIGAGVAGLAAIGAANSLGAI---VRAFDTR  204 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCE---EEEEcCC
Confidence            36899999999999999999998865   9998877

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=89.48  E-value=0.4  Score=46.21  Aligned_cols=36  Identities=19%  Similarity=0.147  Sum_probs=32.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCC-CeEEEEccCCcc
Q 013952          162 NGKAVVVGGGYIGLELSAALKINN-IDVSMVYPEPWC  197 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g-~~V~li~~~~~~  197 (433)
                      ..+++|||+|..|+-+|..|.+.| .+|+++++.+.+
T Consensus         9 ~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~   45 (484)
T 4dsg_A            9 TPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTP   45 (484)
T ss_dssp             SCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence            468999999999999999999998 799999887543

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=89.46  E-value=0.37  Score=43.57  Aligned_cols=34  Identities=21%  Similarity=0.334  Sum_probs=29.4

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ++|+|||+|..|...|..|++.|+ ..+|++++.+
T Consensus         8 mkI~IiGaG~vG~~~a~~l~~~g~-~~~V~l~d~~   41 (319)
T 1lld_A            8 TKLAVIGAGAVGSTLAFAAAQRGI-AREIVLEDIA   41 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-CCEEEEEeCC
Confidence            589999999999999999999886 2249999887

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=89.34  E-value=0.43  Score=44.36  Aligned_cols=33  Identities=24%  Similarity=0.366  Sum_probs=30.4

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      .++|.|||+|.-|...+..+++.|++   |+++++.
T Consensus        12 ~~~IlIlG~G~lg~~la~aa~~lG~~---viv~d~~   44 (377)
T 3orq_A           12 GATIGIIGGGQLGKMMAQSAQKMGYK---VVVLDPS   44 (377)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCE---EEEEECC
Confidence            46899999999999999999999997   8999877

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=89.24  E-value=0.42  Score=44.95  Aligned_cols=33  Identities=21%  Similarity=0.419  Sum_probs=30.6

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ..+|+|||.|..|...|..|.+.|.+   |++||.+
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~---vvvId~d   36 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVK---MVVLDHD   36 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCC---EEEEECC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCC---EEEEECC
Confidence            45799999999999999999999987   9999998

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=89.22  E-value=0.26  Score=47.13  Aligned_cols=40  Identities=25%  Similarity=0.351  Sum_probs=27.1

Q ss_pred             CCCCcCeEEEECCCHH-HHHHHHHHHHc--CCCCCcEEEEcCC
Q 013952            1 MAEKSFKYVILGGGVS-AGYAAREFAKQ--GVKPGELAIISKE   40 (433)
Q Consensus         1 Mm~~~~dvvIIGgG~a-Gl~aA~~l~~~--g~~~~~V~lie~~   40 (433)
                      |||++.+|.|||||.. |.+.|..|.+.  +++..+|+|+|.+
T Consensus        24 m~m~~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~   66 (472)
T 1u8x_X           24 MKKKSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDND   66 (472)
T ss_dssp             --CCCEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSC
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCC
Confidence            5555679999999986 33345567776  5544569999887

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=89.20  E-value=0.38  Score=46.72  Aligned_cols=33  Identities=24%  Similarity=0.216  Sum_probs=30.7

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc
Q 013952          164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPW  196 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~  196 (433)
                      .|+|||+|..|+-+|..+++.|.+|+++++.+.
T Consensus        43 DVvVVGaG~AGl~AA~~aa~~G~~V~vlEk~~~   75 (510)
T 4at0_A           43 DVVVAGYGIAGVAASIEAARAGADVLVLERTSG   75 (510)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            689999999999999999999999999998754

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=89.07  E-value=0.5  Score=42.85  Aligned_cols=34  Identities=24%  Similarity=0.486  Sum_probs=30.9

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ..+|+|||+|-.|-.+|..|++.|.  ++++++|..
T Consensus        34 ~~~VlIvGaGGlGs~va~~La~aGV--g~ItlvD~D   67 (340)
T 3rui_A           34 NTKVLLLGAGTLGCYVSRALIAWGV--RKITFVDNG   67 (340)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC--CEEEEECCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC--CEEEEecCC
Confidence            4689999999999999999999995  459999998

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=89.06  E-value=0.59  Score=43.56  Aligned_cols=33  Identities=24%  Similarity=0.326  Sum_probs=30.3

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      .++|.|||+|..|...+..+++.|++   |.+++..
T Consensus        14 ~k~IlIlG~G~~g~~la~aa~~~G~~---vi~~d~~   46 (389)
T 3q2o_A           14 GKTIGIIGGGQLGRMMALAAKEMGYK---IAVLDPT   46 (389)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTTCE---EEEEESS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCE---EEEEeCC
Confidence            46899999999999999999999998   8999877

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=89.00  E-value=0.33  Score=41.16  Aligned_cols=33  Identities=18%  Similarity=0.342  Sum_probs=29.3

Q ss_pred             cCeEEEECC-CHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGG-GVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGg-G~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      +++|+|.|| |..|...+..|.+.|.+   |+++++.
T Consensus         4 m~~ilItGatG~iG~~l~~~L~~~g~~---V~~~~r~   37 (227)
T 3dhn_A            4 VKKIVLIGASGFVGSALLNEALNRGFE---VTAVVRH   37 (227)
T ss_dssp             CCEEEEETCCHHHHHHHHHHHHTTTCE---EEEECSC
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCCCE---EEEEEcC
Confidence            468999996 99999999999998876   9999887

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=88.98  E-value=0.5  Score=45.34  Aligned_cols=34  Identities=24%  Similarity=0.468  Sum_probs=30.5

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCC-CCCcEEEEcCC
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGV-KPGELAIISKE   40 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~-~~~~V~lie~~   40 (433)
                      +.+||+|||||++|+++|..|++.|+ +   |+|+|++
T Consensus         3 ~~~~~~iiG~G~~g~~~a~~l~~~g~~~---v~~~e~~   37 (472)
T 1b37_A            3 VGPRVIVVGAGMSGISAAKRLSEAGITD---LLILEAT   37 (472)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHHTTCCC---EEEECSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCc---eEEEeCC
Confidence            46899999999999999999999987 6   9999998

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=88.96  E-value=0.5  Score=41.75  Aligned_cols=33  Identities=24%  Similarity=0.226  Sum_probs=29.8

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      +++|+|.|+|..|...+..|.+.|++   |++++++
T Consensus         3 ~~~ilVtGaG~iG~~l~~~L~~~g~~---V~~~~r~   35 (286)
T 3gpi_A            3 LSKILIAGCGDLGLELARRLTAQGHE---VTGLRRS   35 (286)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCC---EEEEECT
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCE---EEEEeCC
Confidence            35799999999999999999999987   9998877

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=88.95  E-value=0.35  Score=42.74  Aligned_cols=32  Identities=25%  Similarity=0.313  Sum_probs=28.8

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ++|+|.|+|..|...+..|.+.|++   |+++.++
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~~g~~---V~~~~r~   37 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAPQGWR---IIGTSRN   37 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGGGTCE---EEEEESC
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCE---EEEEEcC
Confidence            4799999999999999999999876   8888776

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=88.91  E-value=0.6  Score=42.05  Aligned_cols=33  Identities=15%  Similarity=0.140  Sum_probs=29.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccC
Q 013952          162 NGKAVVVGGGYIGLELSAALKINNI-DVSMVYPE  194 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g~-~V~li~~~  194 (433)
                      ..+|.|||.|..|.-+|..|.+.|. +|+++++.
T Consensus        24 ~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~   57 (312)
T 3qsg_A           24 AMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAA   57 (312)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCC
Confidence            3689999999999999999999999 99998764

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=88.85  E-value=0.38  Score=45.97  Aligned_cols=33  Identities=27%  Similarity=0.400  Sum_probs=30.5

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      .++|+|||+|..|...+..|.+.|.+   |+|++++
T Consensus        12 ~~~vlVvGgG~va~~k~~~L~~~ga~---V~vi~~~   44 (457)
T 1pjq_A           12 DRDCLIVGGGDVAERKARLLLEAGAR---LTVNALT   44 (457)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBE---EEEEESS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCcCE---EEEEcCC
Confidence            46899999999999999999999876   9999987

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=88.84  E-value=0.22  Score=47.43  Aligned_cols=31  Identities=35%  Similarity=0.351  Sum_probs=29.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCC-CeEEEEcc
Q 013952          163 GKAVVVGGGYIGLELSAALKINN-IDVSMVYP  193 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g-~~V~li~~  193 (433)
                      ..|+|||+|..|+-+|..|++.| .+|+++++
T Consensus        24 ~dVvIIGgGiaGls~A~~La~~G~~~V~vlE~   55 (448)
T 3axb_A           24 FDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDA   55 (448)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHCSCEEEEES
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCcEEEEcc
Confidence            47999999999999999999999 99999998

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=88.81  E-value=0.41  Score=44.18  Aligned_cols=32  Identities=38%  Similarity=0.438  Sum_probs=29.2

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      .+|+|+|+|.+|+.++..|+..|.+   |++++++
T Consensus       168 ~~VlViGaGgvG~~aa~~a~~~Ga~---V~v~dr~  199 (361)
T 1pjc_A          168 GKVVILGGGVVGTEAAKMAVGLGAQ---VQIFDIN  199 (361)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCE---EEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCE---EEEEeCC
Confidence            6899999999999999999999874   9998877

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=88.69  E-value=0.42  Score=44.52  Aligned_cols=33  Identities=15%  Similarity=0.190  Sum_probs=29.4

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ..+|+|||+|.+|+.++..++..|.+   |+++|..
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga~---V~~~d~~  204 (384)
T 1l7d_A          172 PARVLVFGVGVAGLQAIATAKRLGAV---VMATDVR  204 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCE---EEEEeCC
Confidence            46899999999999999999998875   8998877

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=88.56  E-value=0.32  Score=43.85  Aligned_cols=33  Identities=24%  Similarity=0.463  Sum_probs=27.8

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHc-----C-CCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQ-----G-VKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~-----g-~~~~~V~lie~~   40 (433)
                      +++|.|||+|.-|...|..|++.     | ++   |+++++.
T Consensus         8 ~m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~---V~~~~r~   46 (317)
T 2qyt_A            8 PIKIAVFGLGGVGGYYGAMLALRAAATDGLLE---VSWIARG   46 (317)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHTTSSEE---EEEECCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCccccCCCCC---EEEEEcH
Confidence            35899999999999999999998     7 65   8887653

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=88.56  E-value=0.5  Score=42.91  Aligned_cols=37  Identities=19%  Similarity=0.249  Sum_probs=31.0

Q ss_pred             CCCCcCeEEEECC-CHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            1 MAEKSFKYVILGG-GVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         1 Mm~~~~dvvIIGg-G~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ||+..+.|+|.|| |..|...+..|.+.|++   |+++++.
T Consensus         1 ~M~~~~~vlVTGatG~iG~~l~~~L~~~G~~---V~~~~r~   38 (341)
T 3enk_A            1 SMSTKGTILVTGGAGYIGSHTAVELLAHGYD---VVIADNL   38 (341)
T ss_dssp             -CCSSCEEEEETTTSHHHHHHHHHHHHTTCE---EEEECCC
T ss_pred             CCCCCcEEEEecCCcHHHHHHHHHHHHCCCc---EEEEecC
Confidence            5666678999995 99999999999999986   8888776

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=88.53  E-value=0.42  Score=43.09  Aligned_cols=33  Identities=21%  Similarity=0.289  Sum_probs=28.8

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCC-CCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGV-KPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~-~~~~V~lie~~   40 (433)
                      .++|.|||.|.-|...|..|++.|+ +   |++++++
T Consensus        24 ~~~I~iIG~G~mG~~~A~~L~~~G~~~---V~~~dr~   57 (312)
T 3qsg_A           24 AMKLGFIGFGEAASAIASGLRQAGAID---MAAYDAA   57 (312)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHSCCE---EEEECSS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCe---EEEEcCC
Confidence            4689999999999999999999997 5   8888775

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=88.51  E-value=0.67  Score=42.25  Aligned_cols=35  Identities=20%  Similarity=0.210  Sum_probs=30.0

Q ss_pred             cCeEEEECC-CHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGG-GVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGg-G~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ..+|+|||+ |..|.++|..+...|. ..+|+++|..
T Consensus         8 ~~KV~ViGaaG~VG~~~a~~l~~~g~-~~evvLiDi~   43 (343)
T 3fi9_A            8 EEKLTIVGAAGMIGSNMAQTAAMMRL-TPNLCLYDPF   43 (343)
T ss_dssp             SSEEEEETTTSHHHHHHHHHHHHTTC-CSCEEEECSC
T ss_pred             CCEEEEECCCChHHHHHHHHHHhcCC-CCEEEEEeCC
Confidence            468999997 9999999999999885 3459999876

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=88.40  E-value=0.5  Score=42.52  Aligned_cols=33  Identities=18%  Similarity=0.297  Sum_probs=28.5

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      .+|.|||+|..|...|..|+..|+-  +|+++|.+
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~--~v~L~Di~   35 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELG--DIVLLDIV   35 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCS--EEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCC--eEEEEeCC
Confidence            4799999999999999999998851  29999876

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=88.35  E-value=0.46  Score=45.23  Aligned_cols=32  Identities=22%  Similarity=0.341  Sum_probs=29.7

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ++|.|||.|.-|+..|..|++.|++   |+++|.+
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~---V~~~D~~   34 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGAN---VRCIDTD   34 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCE---EEEECSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCE---EEEEECC
Confidence            4899999999999999999999987   9999887

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=88.21  E-value=0.58  Score=42.13  Aligned_cols=32  Identities=25%  Similarity=0.330  Sum_probs=30.1

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      .+|.|||+|.-|..-|..++..|++   |+++|.+
T Consensus         7 ~~VaViGaG~MG~giA~~~a~~G~~---V~l~D~~   38 (319)
T 3ado_A            7 GDVLIVGSGLVGRSWAMLFASGGFR---VKLYDIE   38 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCC---EEEECSC
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCe---EEEEECC
Confidence            5899999999999999999999998   9999987

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=88.19  E-value=0.51  Score=42.28  Aligned_cols=33  Identities=24%  Similarity=0.171  Sum_probs=29.8

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      .++|.|||.|.-|...|..|++.|++   |++++++
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~---V~~~dr~   39 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLS---TWGADLN   39 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCe---EEEEECC
Confidence            46899999999999999999999986   8888877

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=88.17  E-value=0.53  Score=40.88  Aligned_cols=34  Identities=26%  Similarity=0.276  Sum_probs=30.6

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ..+|+|||+|..|..+|..|++.|..  +++|+|.+
T Consensus        28 ~~~VlvvG~GglG~~va~~La~~Gvg--~i~lvD~d   61 (251)
T 1zud_1           28 DSQVLIIGLGGLGTPAALYLAGAGVG--TLVLADDD   61 (251)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHTTCS--EEEEECCC
T ss_pred             cCcEEEEccCHHHHHHHHHHHHcCCC--eEEEEeCC
Confidence            46899999999999999999999954  59999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	433
d1nhpa2	123	c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus	3e-24
d1d7ya2	121	c.3.1.5 (A:116-236) NADH-dependent ferredoxin redu	2e-23
d1m6ia2	137	c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF	8e-23
d1q1ra2	133	c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseud	4e-22
d1q1ra1	185	c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductas	2e-18
d1xhca2	122	c.3.1.5 (A:104-225) NADH oxidase /nitrite reductas	5e-17
d1d7ya1	183	c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo	9e-17
d1d7ya1	183	c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo	8e-04
d1mo9a2	121	c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl co	2e-14
d1gesa2	116	c.3.1.5 (A:147-262) Glutathione reductase {Escheri	1e-13
d1onfa2	117	c.3.1.5 (A:154-270) Glutathione reductase {Plasmod	5e-13
d1nhpa1	198	c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enter	7e-13
d1m6ia1	213	c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing f	6e-12
d1m6ia1	213	c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing f	6e-09
d1feca2	117	c.3.1.5 (A:170-286) Trypanothione reductase {Crith	2e-11
d1h6va2	122	c.3.1.5 (A:171-292) Mammalian thioredoxin reductas	9e-11
d1aoga2	117	c.3.1.5 (A:170-286) Trypanothione reductase {Trypa	2e-10
d1v59a2	122	c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase	6e-10
d1ojta2	125	c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase	9e-10
d1lvla2	115	c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase	3e-09
d1trba1	190	c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase	3e-09
d3grsa2	125	c.3.1.5 (A:166-290) Glutathione reductase {Human (	5e-09
d1xhca1	167	c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite	7e-09
d3lada2	119	c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase	8e-09
d1djqa2	156	c.3.1.1 (A:490-645) Trimethylamine dehydrogenase,	1e-08
d1mo9a1	261	c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop	1e-07
d1fcda1	186	c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulf	3e-07
d1d7ya3	97	d.87.1.1 (A:309-405) NADH-dependent ferredoxin red	7e-07
d1ebda2	117	c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase	8e-07
d1ebda1	223	c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd	8e-06
d2gjca1	311	c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th	7e-05
d1vdca1	192	c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase	7e-05
d1q1ra3	103	d.87.1.1 (A:320-422) Putidaredoxin reductase {Pseu	8e-05
d1djqa3	233	c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehyd	9e-05
d1aoga1	238	c.3.1.5 (A:3-169,A:287-357) Trypanothione reductas	1e-04
d1feca1	240	c.3.1.5 (A:1-169,A:287-357) Trypanothione reductas	1e-04
d1ojta1	229	c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh	2e-04
d1dxla1	221	c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd	2e-04
d1xdia1	233	c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehyd	4e-04
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	7e-04
d1fl2a1	184	c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide	9e-04
d3lada1	229	c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehyd	0.001
d3grsa1	221	c.3.1.5 (A:18-165,A:291-363) Glutathione reductase	0.001
d1gtea4	196	c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine de	0.001
d1h6va1	235	c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin	0.003
d1v59a1	233	c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd	0.003

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 123

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

 Score = 95.3 bits (236), Expect = 3e-24
 Identities = 32/126 (25%), Positives = 51/126 (40%), Gaps = 3/126 (2%)

Query: 133 VEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVY 192
           + G D  NI+ +R    A KL +     +    VV+G GYIG+E + A       V+++ 
Sbjct: 1   IPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVID 60

Query: 193 PEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEAD 252
                +      +             I I  G     +    DG V++V + D    +AD
Sbjct: 61  ILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYE--GDGRVQKV-VTDKNAYDAD 117

Query: 253 IVVVGV 258
           +VVV V
Sbjct: 118 LVVVAV 123

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 121

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 92.9 bits (230), Expect = 2e-23
 Identities = 40/127 (31%), Positives = 66/127 (51%), Gaps = 9/127 (7%)

Query: 133 VEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVY 192
           ++GA    +  LR ++DA ++   ++ +   + ++VGGG IGLEL+A  +   + VS+V 
Sbjct: 4   LQGATM-PVHTLRTLEDARRIQAGLRPQS--RLLIVGGGVIGLELAATARTAGVHVSLVE 60

Query: 193 PEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEAD 252
            +P  M R   A +A F   Y+A +G+ +       G           V L DG  + AD
Sbjct: 61  TQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGS------VDGVVLLDDGTRIAAD 114

Query: 253 IVVVGVG 259
           +VVVG+G
Sbjct: 115 MVVVGIG 121

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.4 bits (226), Expect = 8e-23
 Identities = 34/138 (24%), Positives = 60/138 (43%), Gaps = 9/138 (6%)

Query: 127 RLTDFGVEGADAK-NIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKIN- 184
            L+     GA+ K      R+I D   L +  +  K     ++GGG++G EL+ AL    
Sbjct: 3   SLSAIDRAGAEVKSRTTLFRKIGDFRSLEKISREVK--SITIIGGGFLGSELACALGRKA 60

Query: 185 ---NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEV 241
                +V  ++PE   M ++    ++ +       +G+K++   +              +
Sbjct: 61  RALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVG--VSSGKLLI 118

Query: 242 KLKDGRTLEADIVVVGVG 259
           KLKDGR +E D +V  VG
Sbjct: 119 KLKDGRKVETDHIVAAVG 136

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 133

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

 Score = 89.6 bits (221), Expect = 4e-22
 Identities = 43/125 (34%), Positives = 68/125 (54%), Gaps = 3/125 (2%)

Query: 136 ADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP 195
             A N  YLR ++DA+ +   + A    + VV+GGGYIGLE++A     N+ V+++    
Sbjct: 11  GKANNFRYLRTLEDAECIRRQLIADN--RLVVIGGGYIGLEVAATAIKANMHVTLLDTAA 68

Query: 196 WCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG-EVKEVKLKDGRTLEADIV 254
             + R+    ++AFYE  +   G+ I  GT   GF  + D  +V  V  +DG  L AD+V
Sbjct: 69  RVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLV 128

Query: 255 VVGVG 259
           + G+G
Sbjct: 129 IAGIG 133

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 185

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

 Score = 81.0 bits (198), Expect = 2e-18
 Identities = 43/181 (23%), Positives = 75/181 (41%), Gaps = 13/181 (7%)

Query: 162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW-CMPRLFTADIAAFYEGYYANKGIK 220
           N   V+VG G  G+E++  L+ +  + ++        +P        A+  G    + + 
Sbjct: 3   NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLY 62

Query: 221 IIKGTVAVGF---------TTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL---ISLFK 268
           +                   T  + + ++V L DGR L+ D +V+  GGRPL     L  
Sbjct: 63  LRTPDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPLIPNCELAS 122

Query: 269 GQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTI 328
               +   GI  ++  +TS   + AVGD A F  +LY    R+E V +A + A +    +
Sbjct: 123 AAGLQVDNGIVINEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKIAAIL 182

Query: 329 M 329
            
Sbjct: 183 C 183

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 122

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 74.7 bits (183), Expect = 5e-17
 Identities = 25/127 (19%), Positives = 55/127 (43%), Gaps = 13/127 (10%)

Query: 133 VEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVY 192
           ++G +   +  LR I DAD++ E+I+       +++GGG+IGLEL+  L      V +++
Sbjct: 7   IKGKE--YLLTLRTIFDADRIKESIENSGEA--IIIGGGFIGLELAGNLAEAGYHVKLIH 62

Query: 193 PEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEAD 252
                +      +++   +      G+K    +  +          +E  L +   +E  
Sbjct: 63  RGAMFLG--LDEELSNMIKDMLEETGVKFFLNSELLEAN-------EEGVLTNSGFIEGK 113

Query: 253 IVVVGVG 259
           + +  +G
Sbjct: 114 VKICAIG 120

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 75.9 bits (185), Expect = 9e-17
 Identities = 37/179 (20%), Positives = 58/179 (32%), Gaps = 19/179 (10%)

Query: 166 VVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----------LFTADIAAFYEGYYA 215
           VV+G G   +   A L+       +                    +   D          
Sbjct: 7   VVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKR 66

Query: 216 NKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQ----- 270
              ++ + G  A  F    D +   V L DGRTL    +V+  G  P   L         
Sbjct: 67  APEVEWLLGVTAQSF----DPQAHTVALSDGRTLPYGTLVLATGAAPRAVLANDALARAA 122

Query: 271 VAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIM 329
                 GI  D + +T+  DVYA+GDV      L     R+E   +A+       + ++
Sbjct: 123 GLACDDGIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHLV 181

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 37.8 bits (86), Expect = 8e-04
 Identities = 31/175 (17%), Positives = 57/175 (32%), Gaps = 18/175 (10%)

Query: 7   KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFH 66
             V+LG G+++     E  + G +     +  +   PY+RP LSK ++            
Sbjct: 5   PVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDA------- 57

Query: 67  VCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVL 126
                  E++  +  +   +E +L       D  + T+  + G    Y  LV+ATG+   
Sbjct: 58  -------EKIRLDCKRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPR 110

Query: 127 RLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKA----VVVGGGYIGLEL 177
            +         A          DA            G        + G +  +E 
Sbjct: 111 AVLANDALARAAGLACDDGIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIET 165

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 121

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 67.3 bits (163), Expect = 2e-14
 Identities = 29/128 (22%), Positives = 47/128 (36%), Gaps = 10/128 (7%)

Query: 135 GADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE 194
           G +AK +F      D   LVE +  +     VVVGG    +E             M+   
Sbjct: 1   GVNAKGVF------DHATLVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRT 54

Query: 195 PWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEV---KLKDGRTLEA 251
                     +  A+       +G++II G+       +A+G V+ V          +E 
Sbjct: 55  EPLKLI-KDNETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIET 113

Query: 252 DIVVVGVG 259
           D V +G+G
Sbjct: 114 DFVFLGLG 121

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 116

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 65.2 bits (158), Expect = 1e-13
 Identities = 24/117 (20%), Positives = 43/117 (36%), Gaps = 7/117 (5%)

Query: 143 YLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLF 202
           Y  + D    L    +     +  VVG GYIG+EL   +        +       +P   
Sbjct: 7   YGIDSDGFFALPALPE-----RVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSFD 61

Query: 203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVG 259
                   E     +G ++    +      N DG +  ++L+DGR+   D ++  +G
Sbjct: 62  PMISETLVE-VMNAEGPQLHTNAIPKAVVKNTDGSLT-LELEDGRSETVDCLIWAIG 116

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 63.2 bits (153), Expect = 5e-13
 Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 3/105 (2%)

Query: 155 EAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYY 214
           E    K++ K  +VG GYI +EL   +K   ID  +       + + F   +    E   
Sbjct: 15  EFFNIKESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRK-FDESVINVLENDM 73

Query: 215 ANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEA-DIVVVGV 258
               I I+     V     +D  +  + L DGR  E  D V+  V
Sbjct: 74  KKNNINIVTFADVVEIKKVSDKNLS-IHLSDGRIYEHFDHVIYCV 117

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 198

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

 Score = 64.9 bits (156), Expect = 7e-13
 Identities = 33/190 (17%), Positives = 59/190 (31%), Gaps = 24/190 (12%)

Query: 164 KAVVVGGGYIGLELSAALKINNIDVSMVYPE------------PWCMPRLFT--ADIAAF 209
           K +V+G  + G E    L   + D  + + E               +         +   
Sbjct: 2   KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYM 61

Query: 210 YEGYYANKGIKIIKGTVAVGFTTNADGEV-KEVKLKDGRTLEADIVVVGVGGRPLISLFK 268
                 ++G+ +   T              K++   + R    D +++  G  P      
Sbjct: 62  TGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDGV 121

Query: 269 GQVAE---------NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARK 319
                           G I+TD++ +TS  DV+AVGD              +    +ARK
Sbjct: 122 RPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNARK 181

Query: 320 SAEQAVKTIM 329
               AVK + 
Sbjct: 182 QGRFAVKNLE 191

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 213

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.4 bits (150), Expect = 6e-12
 Identities = 31/137 (22%), Positives = 55/137 (40%), Gaps = 15/137 (10%)

Query: 2   AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTA 60
           A     ++++GGG +A  AAR    +      + I+S++   PY RP LSK   F +   
Sbjct: 1   APSHVPFLLIGGGTAAFAAARSIRARD-PGARVLIVSEDPELPYMRPPLSKELWFSDDPN 59

Query: 61  RLPGFHVCVGSGGERLLP-------------EWYKEKGIELILSTEIVRADIASKTLLSA 107
                     +G ER +                 +  G+ ++   ++V+ D+    +   
Sbjct: 60  VTKTLRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLN 119

Query: 108 TGLIFKYQILVIATGST 124
            G    Y+  +IATG T
Sbjct: 120 DGSQITYEKCLIATGGT 136

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 213

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.5 bits (127), Expect = 6e-09
 Identities = 35/212 (16%), Positives = 67/212 (31%), Gaps = 45/212 (21%)

Query: 159 AKKNGKAVVVGGGYIGLELSAALKINNID--VSMVYPEPW-------------------- 196
           A  +   +++GGG      + +++  +    V +V  +P                     
Sbjct: 1   APSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNV 60

Query: 197 ---------------CMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEV 241
                             +  +  ++A    +  N G+ ++ G   V      D     V
Sbjct: 61  TKTLRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQL----DVRDNMV 116

Query: 242 KLKDGRTLEADIVVVGVGGRPLISLFKGQVA---ENKGGIETDDFFKTSADDVYAVGDVA 298
           KL DG  +  +  ++  GG               ++  G    +    +  +++  GD A
Sbjct: 117 KLNDGSQITYEKCLIATGGTEPNVELAKTGGLEIDSDFGGFRVNAELQARSNIWVAGDAA 176

Query: 299 TFPMKLYREMRRVEHVDHARKSAEQAVKTIMA 330
            F        RRVEH DHA  S   A + +  
Sbjct: 177 CFYDIKL-GRRRVEHHDHAVVSGRLAGENMTG 207

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 58.7 bits (141), Expect = 2e-11
 Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 3/99 (3%)

Query: 163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPE--PWCMPRLFTADIAAFYEGYYANKGIK 220
            +A+ VGGGYI +E +            V        + R F +++           GI 
Sbjct: 19  KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGIN 78

Query: 221 IIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVG 259
           +         T NADG  + V  + G   + D+V++ +G
Sbjct: 79  VRTHENPAKVTKNADG-TRHVVFESGAEADYDVVMLAIG 116

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 122

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 57.0 bits (137), Expect = 9e-11
 Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 9/104 (8%)

Query: 163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKII 222
           GK +VVG  Y+ LE +  L    +DV+++          F  D+A     +    GIK I
Sbjct: 21  GKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRG--FDQDMANKIGEHMEEHGIKFI 78

Query: 223 KGTVAVGFTTNADGEVKEVKL-------KDGRTLEADIVVVGVG 259
           +  V         G    +K+       ++    E + V++ VG
Sbjct: 79  RQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG 122

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 56.0 bits (134), Expect = 2e-10
 Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 5/99 (5%)

Query: 163 GKAVVVGGGYIGLELSAAL---KINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGI 219
            + + VGGG+I +E +      K  +  V++ Y     +   F   +           GI
Sbjct: 21  RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRG-FDHTLREELTKQLTANGI 79

Query: 220 KIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGV 258
           +I+          NADG  K V  + G+ ++ D+V++ +
Sbjct: 80  QILTKENPAKVELNADG-SKSVTFESGKKMDFDLVMMAI 117

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 122

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.4 bits (130), Expect = 6e-10
 Identities = 26/130 (20%), Positives = 54/130 (41%), Gaps = 15/130 (11%)

Query: 132 GVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMV 191
           G+E  D + I          ++ +        +  ++GGG IGLE+ +        V++V
Sbjct: 2   GIE-IDEEKIVSSTGALSLKEIPK--------RLTIIGGGIIGLEMGSVYSRLGSKVTVV 52

Query: 192 YPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGR---- 247
             +P         ++A   + +   +G+     T  +    N D  V E+ ++D +    
Sbjct: 53  EFQPQIGAS-MDGEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQ 111

Query: 248 -TLEADIVVV 256
             LEA++++V
Sbjct: 112 ENLEAEVLLV 121

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 125

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 54.1 bits (129), Expect = 9e-10
 Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 3/99 (3%)

Query: 163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKII 222
           GK +++GGG IGLE+          + +V      M       +  + +     +   I+
Sbjct: 27  GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGADRDLVKVWQK-QNEYRFDNIM 85

Query: 223 KGTVAVGFTTNADGEVKEVKLKDG--RTLEADIVVVGVG 259
             T  V      DG     +  +        D V+V  G
Sbjct: 86  VNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAG 124

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 115

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 52.5 bits (125), Expect = 3e-09
 Identities = 31/97 (31%), Positives = 39/97 (40%), Gaps = 3/97 (3%)

Query: 163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKII 222
              VVVGGGYIGLEL  A +     VS+V      +P   +   A   E      GI + 
Sbjct: 22  QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTYDSELTAPVAE-SLKKLGIALH 80

Query: 223 KGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVG 259
            G    G+       +          LEAD V+V VG
Sbjct: 81  LGHSVEGYEN--GCLLANDGKGGQLRLEADRVLVAVG 115

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} Length = 190

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

 Score = 54.1 bits (129), Expect = 3e-09
 Identities = 24/164 (14%), Positives = 53/164 (32%), Gaps = 21/164 (12%)

Query: 161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIA---AFYEGYYANK 217
           K+ K +++G G  G   +      N+   ++           T ++              
Sbjct: 4   KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPL 63

Query: 218 GIKIIKGTVAVGFTTNADGEVKEVKLKDG--------RTLEADIVVVGVGGRP-----LI 264
            ++ +        T      + +V L++              D +++  G          
Sbjct: 64  LMERMHEHATKFETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASARYHSPNT 123

Query: 265 SLFKGQVAENKGGIETD-----DFFKTSADDVYAVGDVATFPMK 303
           ++F+GQ+    G I+       +  +TS   V+A GDV     +
Sbjct: 124 AIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYR 167

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (124), Expect = 5e-09
 Identities = 22/104 (21%), Positives = 41/104 (39%), Gaps = 8/104 (7%)

Query: 163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKII 222
           G++V+VG GYI +E++  L       S++      +    +       E    N G++++
Sbjct: 23  GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTE-ELENAGVEVL 81

Query: 223 KGTVAVGFTTNADG-EVKEVKLKDGR------TLEADIVVVGVG 259
           K +          G EV  V    GR        + D ++  +G
Sbjct: 82  KFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG 125

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 167

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 52.8 bits (125), Expect = 7e-09
 Identities = 34/173 (19%), Positives = 57/173 (32%), Gaps = 14/173 (8%)

Query: 164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIK 223
           K V+VG G  G EL+  L     +V+++  EP                          + 
Sbjct: 2   KVVIVGNGPGGFELAKQLS-QTYEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLD 60

Query: 224 ------GTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGG 277
                   + +          ++V + +   +  D +V+  G    + L +        G
Sbjct: 61  WYRKRGIEIRLAEEAKLIDRGRKVVITEKGEVPYDTLVLATGAPN-VDLARRSGIHTGRG 119

Query: 278 IETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMA 330
           I  DD F+TSA DVYA+GD A +                A + A      +  
Sbjct: 120 ILIDDNFRTSAKDVYAIGDCAEYS------GIIAGTAKAAMEQARVLADILKG 166

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 119

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 51.3 bits (122), Expect = 8e-09
 Identities = 27/124 (21%), Positives = 45/124 (36%), Gaps = 10/124 (8%)

Query: 137 DAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW 196
           D   I       D   +          K  V+G G IGLEL +       +V+++     
Sbjct: 5   DQDVIVDSTGALDFQNVPG--------KLGVIGAGVIGLELGSVWARLGAEVTVLEAMDK 56

Query: 197 CMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG-EVKEVKLKDGRTLEADIVV 255
            +P      +A   +     +G+KI+ G    G         VK V  +  ++   D ++
Sbjct: 57  FLPA-VDEQVAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLI 115

Query: 256 VGVG 259
           V VG
Sbjct: 116 VAVG 119

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 156

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

 Score = 51.8 bits (123), Expect = 1e-08
 Identities = 21/157 (13%), Positives = 40/157 (25%), Gaps = 23/157 (14%)

Query: 120 ATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSA 179
             G+    LT   + GADA     L   +      + I  +     +     ++   L+ 
Sbjct: 4   TDGTN--CLTHDPIPGADASLPDQLT-PEQVMDGKKKIGKRVV--ILNADTYFMAPSLAE 58

Query: 180 ALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN------ 233
            L     +V++V          FT +             ++ +                 
Sbjct: 59  KLATAGHEVTIVSGVHLANYMHFTLEYPNMMR-RLHELHVEELGDHFCSRIEPGRMEIYN 117

Query: 234 -----------ADGEVKEVKLKDGRTLEADIVVVGVG 259
                        G          R +E D +V+  G
Sbjct: 118 IWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTG 154

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 50.7 bits (120), Expect = 1e-07
 Identities = 38/222 (17%), Positives = 66/222 (29%), Gaps = 57/222 (25%)

Query: 138 AKNIFYLREIDDADKLVEAIKA--KKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP 195
           A  I  + E  D  +++  +     +   A+ +GGG  G   SA L+       +V   P
Sbjct: 16  ATRIDEILEAPDGGEVIYNVDENDPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWP 75

Query: 196 W---------CMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK-- 244
           +         C+P    +D AA         G                  ++        
Sbjct: 76  FLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKVVGIKEVVDLFRAGRNGP 135

Query: 245 --------------------------------DGRTLEADIVVVGVGGRPLI-------- 264
                                            G+  +A  +++ VG  P          
Sbjct: 136 HGIMNFQSKEQLNLEYILNCPAKVIDNHTVEAAGKVFKAKNLILAVGAGPGTLDVPEQPR 195

Query: 265 ----SLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPM 302
               +   G     KG +  +++ +TS  +VYAVGD+   PM
Sbjct: 196 SAELAKILGLDLGPKGEVLVNEYLQTSVPNVYAVGDLIGGPM 237

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 186

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

 Score = 48.3 bits (113), Expect = 3e-07
 Identities = 30/189 (15%), Positives = 62/189 (32%), Gaps = 24/189 (12%)

Query: 164 KAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKI 221
           K VVVGGG  G   +  +K+   +I+V+++ P         + ++        + K    
Sbjct: 4   KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYD 63

Query: 222 IKGTVAVGFTTNADGEVKEVKLK----DGRTLEADIVVVGVGGRP---LISLFKGQVAEN 274
                 +    ++   +   K       G     D  VV  G       I    G++A+ 
Sbjct: 64  GLRAHGIQVVHDSATGIDPDKKLVKTAGGAEFGYDRCVVAPGIELIYDKIEQRAGKIAQI 123

Query: 275 KG--------GIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVK 326
            G         ++   F  +    ++ +GD +         M +  +   A    + A  
Sbjct: 124 AGLTNDAGWCPVDIKTFESSIHKGIHVIGDASI-----ANPMPKSGYS--ANSQGKVAAA 176

Query: 327 TIMATEGGK 335
            ++    G+
Sbjct: 177 AVVVLLKGE 185

>d1d7ya3 d.87.1.1 (A:309-405) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 97

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 44.8 bits (106), Expect = 7e-07
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 336 TVTGYDYLPYFYSRAFDLSWQFYGDN-VGDTVLFGDNDLASATHKFGTYWIKDGKVVGV 393
           T  GY  LP+++S    L  Q  G     + ++ G+  L +   KF    ++ G++VG 
Sbjct: 1   TAPGYAELPWYWSDQGALRIQVAGLASGDEEIVRGEVSLDA--PKFTLIELQKGRIVGA 57

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 45.6 bits (107), Expect = 8e-07
 Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 2/94 (2%)

Query: 164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIK 223
             VV+GGGYIG+EL  A       V+++      +   F   +AA  +     KG++++ 
Sbjct: 24  SLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG-FEKQMAAIIKKRLKKKGVEVVT 82

Query: 224 GTVAVGFTTNADG-EVKEVKLKDGRTLEADIVVV 256
             +A G     DG  V      + +T++AD V+V
Sbjct: 83  NALAKGAEEREDGVTVTYEANGETKTIDADYVLV 116

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 44.5 bits (104), Expect = 8e-06
 Identities = 30/191 (15%), Positives = 48/191 (25%), Gaps = 54/191 (28%)

Query: 166 VVVGGGYIGLELSAALKINNIDVSMVYPEP------------------------------ 195
           +VVG G  G   +         V++V                                  
Sbjct: 7   LVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKHSE 66

Query: 196 ----------------WCMPRLFTADIAAFYEGYYANKGIKIIKGT----VAVGFTTNAD 235
                                     +    EG      ++I+KG      A        
Sbjct: 67  EMGIKAENVTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVNG 126

Query: 236 GEVKEVKLKDGRTLEADIVVVGVGGRPLISLFK----GQVAENKGGIETDDFFKTSADDV 291
              +    K+         +  VG RP          G    N+G IE D   +TS  ++
Sbjct: 127 DSAQTYTFKNAIIATGSRPIELVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRTSVPNI 186

Query: 292 YAVGDVATFPM 302
           +A+GD+   P 
Sbjct: 187 FAIGDIVPGPA 197

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.2 bits (98), Expect = 7e-05
 Identities = 22/229 (9%), Positives = 48/229 (20%), Gaps = 29/229 (12%)

Query: 104 LLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNG 163
            L    + ++ +   +      L ++    +     N+         D +      K   
Sbjct: 110 FLQELEIPYEDEGDYVVVKHAALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEV 169

Query: 164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIK 223
               V   +  +  +   +                       +          K      
Sbjct: 170 TVAGVVTNWTLVTQAHGTQCC---------------------MDPNVIELAGYKNDGTRD 208

Query: 224 GTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGG-IETDD 282
            +   G   +  G                  +V +     +   KG    +    +    
Sbjct: 209 LSQKHGVILSTTGHDGP------FGAFCAKRIVDIDQNQKLGGMKGLDMNHAEHDVVIHS 262

Query: 283 FFKTSADDVYAVGDVATFPMKLYREMRRVEH-VDHARKSAEQAVKTIMA 330
                 D++Y  G        L R              +AEQ +K   A
Sbjct: 263 GAYAGVDNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQILKHFAA 311

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 192

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 41.4 bits (96), Expect = 7e-05
 Identities = 30/166 (18%), Positives = 47/166 (28%), Gaps = 23/166 (13%)

Query: 161 KNGKAVVVGGGYIGLE-----LSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYA 215
            N +  +VG G            A LK    +  M            T D+  F      
Sbjct: 4   HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEG 63

Query: 216 NKGIKIIKGTVAVGFTTNADGEVKEVKLKDGR-----------TLEADIVVVGVGGR--- 261
             G+++                 + V   D              + AD V++ +G     
Sbjct: 64  ILGVELTDKFRKQSERFGTTIFTETVTKVDFSSKPFKLFTDSKAILADAVILAIGAVAKG 123

Query: 262 --PLISLFKGQVAENKGG-IETD-DFFKTSADDVYAVGDVATFPMK 303
             P      G V  +  G + T     +TS   V+A GDV     +
Sbjct: 124 HEPATKFLDGGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKKYR 169

>d1q1ra3 d.87.1.1 (A:320-422) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 103

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

 Score = 39.4 bits (92), Expect = 8e-05
 Identities = 9/56 (16%), Positives = 25/56 (44%), Gaps = 6/56 (10%)

Query: 340 YDYLPYFYSRAFDLSWQFYGDNVG--DTVLFGDNDLASATHKFGTYWIKDGKVVGV 393
            +  P+F+S  +++  +  G + G    ++ G          F  ++++  +V+ V
Sbjct: 4   DEAAPWFWSDQYEIGLKMVGLSEGYDRIIVRGSLA----QPDFSVFYLQGDRVLAV 55

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 233

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

 Score = 41.3 bits (95), Expect = 9e-05
 Identities = 23/199 (11%), Positives = 57/199 (28%), Gaps = 26/199 (13%)

Query: 2   AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTAR 61
            +     +I+G G S   AAR   + G                            +    
Sbjct: 46  TKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDT------------------AEKIGGH 87

Query: 62  LPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIAT 121
           L       G G      ++ + +  +L+   +  +  +  K + +   L +    ++IAT
Sbjct: 88  LNQVAALPGLGEWSYHRDYRETQITKLLKKNKESQLALGQKPMTADDVLQYGADKVIIAT 147

Query: 122 GSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAAL 181
           G++   L +             ++ I                  ++    + G  ++  +
Sbjct: 148 GASECTLWNELKARESEWAENDIKGIYLIGD--------AEAPRLIADATFTGHRVAREI 199

Query: 182 KINNIDVSMVYPEPWCMPR 200
           +  N  +++ Y        
Sbjct: 200 EEANPQIAIPYKRETIAWG 218

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 238

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 41.2 bits (95), Expect = 1e-04
 Identities = 12/46 (26%), Positives = 23/46 (50%)

Query: 264 ISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMR 309
           + L    V    GG++ D++ +T+  ++YA+GDV    M     + 
Sbjct: 176 LQLQNAGVMIKNGGVQVDEYSRTNVSNIYAIGDVTNRVMLTPVAIN 221

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 240

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 41.1 bits (95), Expect = 1e-04
 Identities = 24/110 (21%), Positives = 42/110 (38%), Gaps = 13/110 (11%)

Query: 213 YYANKGIKIIKGT-VAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL-------- 263
           +   +G+   +G        T    E  +       TL+ + +++  G  P         
Sbjct: 113 FADTEGLTFHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLATGSWPQHLGIEVPR 172

Query: 264 ---ISLFKGQVAENKGG-IETDDFFKTSADDVYAVGDVATFPMKLYREMR 309
              + L K  V   K G I+ D + KT+ D++YA+GDV    M     + 
Sbjct: 173 SQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDVTDRVMLTPVAIN 222

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 40.7 bits (94), Expect = 2e-04
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 269 GQVAENKGGIETDDFFKTSADDVYAVGDVATFPM 302
           G    ++G IE D   +T+   +YA+GD+   PM
Sbjct: 172 GVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQPM 205

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 40.2 bits (93), Expect = 2e-04
 Identities = 22/129 (17%), Positives = 46/129 (35%), Gaps = 12/129 (9%)

Query: 183 INNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVK 242
           +   +V +             +++    EG +    +  +KG    G   +      +  
Sbjct: 72  VKVSNVEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGY---GKFVSPSEISVDTI 128

Query: 243 LKDGRTLEADIVVVGVGGRPL--------ISLFKGQVA-ENKGGIETDDFFKTSADDVYA 293
             +   ++   +++  G            ++L K  V  +  G I  ++ F T+   VYA
Sbjct: 129 EGENTVVKGKHIIIATGSDVKGRTPFTSGLNLDKIGVETDKLGRILVNERFSTNVSGVYA 188

Query: 294 VGDVATFPM 302
           +GDV   PM
Sbjct: 189 IGDVIPGPM 197

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 39.7 bits (91), Expect = 4e-04
 Identities = 7/29 (24%), Positives = 10/29 (34%)

Query: 274 NKGGIETDDFFKTSADDVYAVGDVATFPM 302
               +  D   +T A  +YA GD      
Sbjct: 180 RGNYLTVDRVSRTLATGIYAAGDCTGLLP 208

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.1 bits (89), Expect = 7e-04
 Identities = 34/328 (10%), Positives = 84/328 (25%), Gaps = 39/328 (11%)

Query: 1   MAEKSFKYVILGGGVSAGYAAREFAKQGVK---------PGELAIISKEVAPYERPALSK 51
           M E+ +  ++LG G++    +   +  G K          G  +  S             
Sbjct: 3   MDEE-YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESS-SITPLEELYKRFQL 60

Query: 52  AYLFPEGTARLPGFHVCVGSGG---ERLLPEWYKEKGIELIL------STEIVRADIASK 102
               PE   R   ++V +          L +      +   L       + + +     K
Sbjct: 61  LEGPPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYK 120

Query: 103 TLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKN 162
              + T  +    + +         L        +    F   +  +        K    
Sbjct: 121 VPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLG 180

Query: 163 GKAVVVGGGYIGLELSA------------ALKINNIDVSMVYPEPWCMPRLFTADIAAFY 210
              +   G  + L  +              +K+ +  ++     P+  P     ++   +
Sbjct: 181 QDVIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARYGKSPYLYPLYGLGELPQGF 240

Query: 211 EGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP----LISL 266
               A  G   +            +         +G       ++      P    +   
Sbjct: 241 ARLSAIYGGTYMLNKPVDDIIM--ENGKVVGVKSEGEVARCKQLICDPSYVPDRVPIDDG 298

Query: 267 FKGQVAENKGGIETDDFFKTSADDVYAV 294
            + QV  +    +    F+T+ +D+  +
Sbjct: 299 SESQVFCSC-SYDATTHFETTCNDIKDI 325

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 184

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

 Score = 37.8 bits (86), Expect = 9e-04
 Identities = 23/154 (14%), Positives = 36/154 (23%), Gaps = 16/154 (10%)

Query: 166 VVVGGGYIGLELSAALKINNIDVSMVYPEP----------WCMPRLFTADIAAFYEGY-- 213
           ++VG G  G   +       I   ++                   +   +          
Sbjct: 5   LIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKV 64

Query: 214 ----YANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG 269
               Y    I     +  +           E          + IV  G        L   
Sbjct: 65  HVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKLPNTNWLEGA 124

Query: 270 QVAENKGGIETDDFFKTSADDVYAVGDVATFPMK 303
                 G I  D   +T+   V+A GD  T P K
Sbjct: 125 VERNRMGEIIIDAKCETNVKGVFAAGDCTTVPYK 158

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 38.1 bits (87), Expect = 0.001
 Identities = 24/131 (18%), Positives = 48/131 (36%), Gaps = 14/131 (10%)

Query: 183 INNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVK 242
           I+  +V++  P           ++           G+ + +G   +      +    +  
Sbjct: 78  ISTGEVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLLAGKKVEVTAADGS 137

Query: 243 LKDGRTLEADIVVVGVGGRP-----------LISLFKGQVAENKGGIETDDFFKTSADDV 291
               + L+ + V++  G +P           L++   G   + +G I  DD+  TS   V
Sbjct: 138 ---SQVLDTENVILASGSKPVEIPRRPVTTDLLAADSGVTLDERGFIYVDDYCATSVPGV 194

Query: 292 YAVGDVATFPM 302
           YA+GDV    M
Sbjct: 195 YAIGDVVRGAM 205

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 0.001
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 275 KGGIETDDFFKTSADDVYAVGDVATFPM 302
           KG I  D+F  T+   +YAVGDV    +
Sbjct: 168 KGHIIVDEFQNTNVKGIYAVGDVCGKAL 195

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Length = 196

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 37.8 bits (86), Expect = 0.001
 Identities = 27/197 (13%), Positives = 59/197 (29%), Gaps = 16/197 (8%)

Query: 160 KKNGKAVVVGGGYIGLELSAALKINNIDVSMVY---PEPWCMPRLFTADIAAFYEGYYAN 216
             + K  ++G G   +  ++ L         ++        +           Y+     
Sbjct: 2   AYSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFE 61

Query: 217 KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQ-----V 271
             + +    V +    +       +        +A  + +G+         K        
Sbjct: 62  IEL-MKDLGVKIICGKSLSENEITLNTLKEEGYKAAFIGIGLPEVLRDPKVKEALSPIKF 120

Query: 272 AENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMAT 331
                     +  +TS   V+A GD+             VE V+  ++++    K I A 
Sbjct: 121 NRWDLPEVDPETMQTSEPWVFAGGDIVGMA------NTTVESVNDGKQASWYIHKYIQA- 173

Query: 332 EGGKTVTGYDYLPYFYS 348
           + G +V+    LP FY+
Sbjct: 174 QYGASVSAKPELPLFYT 190

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 235

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 9/29 (31%), Positives = 16/29 (55%)

Query: 276 GGIETDDFFKTSADDVYAVGDVATFPMKL 304
           G I   D  +T+   +YA+GD+    ++L
Sbjct: 183 GKIPVTDEEQTNVPYIYAIGDILEGKLEL 211

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.4 bits (83), Expect = 0.003
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 274 NKGGIETDDFFKTSADDVYAVGDVATFPM 302
            +G +  DD F +    +  VGDV   PM
Sbjct: 181 KRGRLVIDDQFNSKFPHIKVVGDVTFGPM 209

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	433
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.9
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.88
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.88
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.87
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	99.86
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.86
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.85
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	99.82
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.81
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	99.8
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	99.79
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.77
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.77
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.77
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.76
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.75
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.75
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.74
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.73
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	99.73
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.73
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	99.72
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.71
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	99.71
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	99.7
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.69
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	99.69
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.68
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	99.68
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	99.68
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.68
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.68
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	99.66
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.66
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.61
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	99.6
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.6
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.6
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	99.58
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.55
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	99.55
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	99.52
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	99.52
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.5
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	99.49
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	99.46
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	99.41
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	99.39
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.36
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	99.32
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.32
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.3
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	99.28
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.28
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	99.27
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	99.25
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	99.24
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	99.23
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	99.23
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	99.22
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	99.21
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.21
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.2
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.19
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	99.19
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.18
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	99.15
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.14
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	99.14
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	99.11
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	99.1
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	99.08
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	99.06
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	99.05
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	99.04
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	99.04
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.03
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	99.02
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.01
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	99.01
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.0
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	98.99
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	98.99
d1v59a3	123	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.95
d3grsa3	115	Glutathione reductase {Human (Homo sapiens) [TaxId	98.95
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.95
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	98.95
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	98.94
d1dxla3	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.94
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.94
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.93
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.93
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	98.93
d1gesa3	115	Glutathione reductase {Escherichia coli [TaxId: 56	98.92
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.91
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.9
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.89
d3lada3	124	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.88
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	98.88
d1ojta3	128	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.88
d1feca3	128	Trypanothione reductase {Crithidia fasciculata [Ta	98.87
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	98.86
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	98.85
d1onfa3	119	Glutathione reductase {Plasmodium falciparum [TaxI	98.84
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.84
d1xdia2	118	Dihydrolipoamide dehydrogenase {Mycobacterium tube	98.81
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.81
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	98.8
d1ebda3	115	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.79
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.77
d1lvla3	123	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.77
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.76
d1d7ya3	97	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.76
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	98.76
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.75
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	98.74
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.74
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	98.73
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	98.71
d1q1ra3	103	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.71
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.7
d1h6va3	133	Mammalian thioredoxin reductase {Rat (Rattus norve	98.67
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	98.67
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	98.66
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.62
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.6
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.6
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	98.56
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.56
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	98.51
d1mo9a3	140	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.5
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	98.49
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	98.46
d1nhpa3	126	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.45
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	98.43
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	98.39
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.37
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.36
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	98.31
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	98.27
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.27
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	98.23
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	98.21
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	98.21
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	98.19
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	98.18
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	98.13
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	98.09
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	98.07
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	98.06
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	98.01
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	97.93
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	97.91
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	97.9
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	97.83
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	97.79
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	97.77
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	97.75
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	97.71
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	97.7
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	97.69
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	97.69
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	97.65
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	97.57
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	97.47
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	97.46
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	97.44
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	97.4
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	97.39
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	97.37
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	97.33
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	97.28
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	97.22
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	97.15
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	97.13
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	97.1
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	96.97
d1fcda2	141	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	96.93
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.82
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	96.71
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	96.51
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	96.39
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	96.36
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	96.35
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	96.31
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	96.31
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.11
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	96.11
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	96.1
d1m6ia3	131	Apoptosis-inducing factor (AIF) {Human (Homo sapie	96.1
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.09
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.07
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.04
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	95.91
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	95.83
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	95.81
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	95.81
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	95.77
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	95.62
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	95.52
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	95.44
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	95.37
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	95.3
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	95.26
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	95.14
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	95.1
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	95.08
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	95.04
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	94.97
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	94.97
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	94.95
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	94.94
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	94.73
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	94.54
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	94.54
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	94.41
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	94.39
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	94.26
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	94.22
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	94.19
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	94.15
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	94.07
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	93.9
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	93.85
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	93.59
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	93.54
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	93.53
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	93.52
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	93.51
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	93.41
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	93.37
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	93.37
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	93.29
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	93.18
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	93.17
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	93.16
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	92.74
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	92.73
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	92.65
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	92.45
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	92.34
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	92.33
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	92.31
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	92.18
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	92.15
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	92.14
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	92.14
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	92.12
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	92.08
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	91.98
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	91.96
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	91.85
d1fcda2	141	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	91.83
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	91.8
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	91.69
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	91.41
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	91.41
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	91.33
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	91.31
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	91.27
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	91.15
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	90.8
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	90.68
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	90.63
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	90.31
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	90.22
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	90.16
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	90.04
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	89.99
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	89.92
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	89.89
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	89.73
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	89.73
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	89.66
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	89.57
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	89.39
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	89.23
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	89.15
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	88.99
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	88.92
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	88.89
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	88.88
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	88.85
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	88.47
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	87.99
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	87.87
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	87.78
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	87.71
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	87.59
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	87.26
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	87.26
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	87.23
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	87.09
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	87.03
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	86.85
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	86.8
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	86.34
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	86.25
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	86.19
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	86.03
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	85.98
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	85.78
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	85.76
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	85.5
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	85.43
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	85.42
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	85.23
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	85.1
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	85.01
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	84.9
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	84.8
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	84.67
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	84.62
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	84.43
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	84.33
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	84.33
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	84.21
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	84.09
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	83.56
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	83.56
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	83.53
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	83.44
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	83.03
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	82.75
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	82.7
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	82.67
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	82.5
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	82.46
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	82.31
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	82.24
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	82.2
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	82.16
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	82.08
d1u7za_	223	Coenzyme A biosynthesis bifunctional protein CoaBC	82.05
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	81.94
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	81.9
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	81.88
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	81.86
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	81.85
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	81.67
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	81.54
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	81.53
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	81.5
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	81.47
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	81.35
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	81.28
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	81.17
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	81.15
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	81.14
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	80.85
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	80.6
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	80.49
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	80.01

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.90  E-value=8.7e-24  Score=177.82  Aligned_cols=163  Identities=22%  Similarity=0.304  Sum_probs=128.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHH----------HHHHhcCcEEEcCCeEEEEEe
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYE----------GYYANKGIKIIKGTVAVGFTT  232 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~----------~~l~~~GV~v~~~~~v~~i~~  232 (433)
                      .+|+|||+|++|+|+|..|.+.|.+++++...+...+.+..+.+...+.          +.....+|+++++.+++++..
T Consensus         4 a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~i~~   83 (183)
T d1d7ya1           4 APVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSFDP   83 (183)
T ss_dssp             SSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTTHHHHCCGGGSBCCGGGSTTCEEEETCCEEEEET
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCceEEEEEecccccchhhHHHhhhhhhhhhhhhHHHHHhhcCCeEEEEecccccccc
Confidence            4799999999999999999999988777665554443322222222221          223456899999999999976


Q ss_pred             cCCCcEEEEEeCCCcEEECCEEEEcccCccChhhhhc------ccccCCCcEEeCCCCCCCCCCeEEcCccccccccccC
Q 013952          233 NADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG------QVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYR  306 (433)
Q Consensus       233 ~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~------~~~~~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~  306 (433)
                        +.  ..+.+.+|+++++|.+++|+|.+|+..+.+.      ++. .+++|.||+++||+.|+|||+|||+..++...+
T Consensus        84 --~~--~~~~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~gl~-~~~~I~vd~~~~ts~~~IyA~GD~a~~~~~~~g  158 (183)
T d1d7ya1          84 --QA--HTVALSDGRTLPYGTLVLATGAAPRAVLANDALARAAGLA-CDDGIFVDAYGRTTCPDVYALGDVTRQRNPLSG  158 (183)
T ss_dssp             --TT--TEEEETTSCEEECSEEEECCCEEECCEEECCHHHHHTTCC-BSSSEECCTTCBCSSTTEEECGGGEEEECTTTC
T ss_pred             --cc--ceeEecCCcEeeeeeEEEEEEEEcccccccccccceeeEe-eCCcEEeccceeccccccchhhhhhccceeeCC
Confidence              43  2567899999999999999999997654432      233 346799999999999999999999999888778


Q ss_pred             cccccccHHHHHHHHHHHHHHHhc
Q 013952          307 EMRRVEHVDHARKSAEQAVKTIMA  330 (433)
Q Consensus       307 ~~~~~~~~~~A~~~g~~aa~~i~~  330 (433)
                      ...+.+++..|.+||+.||+||+.
T Consensus       159 ~~~~~~~~~~A~~qg~~aa~nil~  182 (183)
T d1d7ya1         159 RFERIETWSNAQNQGIAVARHLVD  182 (183)
T ss_dssp             SEEECCCHHHHHHHHHHHHHHHHC
T ss_pred             ceechhHHHHHHHHHHHHHHHHcC
Confidence            777778999999999999999985

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=8.1e-24  Score=181.93  Aligned_cols=113  Identities=26%  Similarity=0.410  Sum_probs=93.5

Q ss_pred             HHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccCh-hhh-hccccc--CCCcEEeCCCCCCCCC
Q 013952          214 YANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI-SLF-KGQVAE--NKGGIETDDFFKTSAD  289 (433)
Q Consensus       214 l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~-~~~-~~~~~~--~~g~i~vd~~~~t~~~  289 (433)
                      +++.||+++++++|++|+.  +.  ..|++++|+++++|.+|+|+|..|+. .+. ..++..  ..++|.||++|||+ |
T Consensus        93 ~~~~gI~~~~g~~V~~id~--~~--~~V~l~dG~~i~~d~lViAtG~~~~~~~l~~~~gl~~~~~~~~i~vd~~l~~~-~  167 (213)
T d1m6ia1          93 IENGGVAVLTGKKVVQLDV--RD--NMVKLNDGSQITYEKCLIATGGTEPNVELAKTGGLEIDSDFGGFRVNAELQAR-S  167 (213)
T ss_dssp             STTCEEEEEETCCEEEEEG--GG--TEEEETTSCEEEEEEEEECCCEEEECCTTHHHHTCCBCTTTCSEECCTTCEEE-T
T ss_pred             HHHCCeEEEeCCEEEEeec--cC--ceeeeccceeeccceEEEeeeeecchhhhhhccchhhhhhhhhhhhhHhcCcC-C
Confidence            4678999999999999976  33  25889999999999999999976554 443 335554  45899999999997 9


Q ss_pred             CeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccC
Q 013952          290 DVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE  332 (433)
Q Consensus       290 ~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~  332 (433)
                      +|||+|||+..++...+. .+++++..|..||+.||+||++..
T Consensus       168 ~VyA~GD~a~~~~~~~g~-~~i~~~~~A~~~gr~aa~ni~g~~  209 (213)
T d1m6ia1         168 NIWVAGDAACFYDIKLGR-RRVEHHDHAVVSGRLAGENMTGAA  209 (213)
T ss_dssp             TEEECGGGEEEEETTTEE-ECCCCHHHHHHHHHHHHHHHTSCC
T ss_pred             ceEEeeeeeeeccccCCc-EEeeEhHHHHHHHHHHHHHhcCCC
Confidence            999999999998876665 456899999999999999999864

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.88  E-value=4.1e-22  Score=169.63  Aligned_cols=165  Identities=21%  Similarity=0.293  Sum_probs=128.6

Q ss_pred             cEEEECCCHHHHHHHHHHHhCC--CeEEEEccCCccCCCCCC--------------HHHHHHHHHHHHhcCcEEEcCCeE
Q 013952          164 KAVVVGGGYIGLELSAALKINN--IDVSMVYPEPWCMPRLFT--------------ADIAAFYEGYYANKGIKIIKGTVA  227 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g--~~V~li~~~~~~~~~~~~--------------~~~~~~l~~~l~~~GV~v~~~~~v  227 (433)
                      +|+|||+|++|+|+|..|.+.+  .+|+++++.+.+..  .+              +++.....+.++++||++++++.|
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~V   79 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISF--LSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEI   79 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSB--CGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEE
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcccc--cccCcchhhcccccchHHHHHhhHHHHHHCCcEEEEeece
Confidence            6999999999999999999874  57999987764311  11              122222356788999999999999


Q ss_pred             EEEEecCCCcEEEEE-eCCCc--EEECCEEEEcccCc--------cChhhhhccccc-CCCcEEeCCCCCCCCCCeEEcC
Q 013952          228 VGFTTNADGEVKEVK-LKDGR--TLEADIVVVGVGGR--------PLISLFKGQVAE-NKGGIETDDFFKTSADDVYAVG  295 (433)
Q Consensus       228 ~~i~~~~~g~~~~v~-~~~g~--~i~~d~vi~a~G~~--------p~~~~~~~~~~~-~~g~i~vd~~~~t~~~~vfa~G  295 (433)
                      .+++.  +++...+. +.+|+  ++++|.+|+|+|..        |++.++...+.. ++|+|.||++|||+.|+|||+|
T Consensus        80 ~~i~~--~~~~v~~~~~~~g~~~~~~~D~li~a~G~~~~~~~g~~~~~~~~~~~~~~~~~G~i~vd~~~~T~~~~IyA~G  157 (198)
T d1nhpa1          80 TAIQP--KEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVG  157 (198)
T ss_dssp             EEEET--TTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCEEESCGGGTTTSCBCTTSCBCCCTTCBCSSTTEEECG
T ss_pred             eeEee--ccccceeeecccccccccccceeeEeecceeecccccccccccccccceeccCCceecCCcccccccceEEec
Confidence            99987  33333343 34443  58899999999865        455666666665 6889999999999999999999


Q ss_pred             ccccccccccCcccccccHHHHHHHHHHHHHHHhccC
Q 013952          296 DVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE  332 (433)
Q Consensus       296 d~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~  332 (433)
                      ||+..+....+...+.+++..|.++|+.||+||.+..
T Consensus       158 D~a~~~~~~~~~~~~~~~a~~A~~~g~~aa~ni~~~~  194 (198)
T d1nhpa1         158 DATLIKYNPADTEVNIALATNARKQGRFAVKNLEEPV  194 (198)
T ss_dssp             GGSCEEEGGGTEEECCCCHHHHHHHHHHHHHTSSSCC
T ss_pred             ceeecccccCCCcccccHHHHHHHHHHHHHHhhCCCC
Confidence            9999887767766677889999999999999997653

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.87  E-value=7.2e-22  Score=166.31  Aligned_cols=167  Identities=27%  Similarity=0.405  Sum_probs=129.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCC--------------CHHHHHHHHHHHHhcCcEEEcCCe
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLF--------------TADIAAFYEGYYANKGIKIIKGTV  226 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~--------------~~~~~~~l~~~l~~~GV~v~~~~~  226 (433)
                      ..++|+|||+|++|+|+|..|++.|.+++++...+.......              ...............++.+..+..
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQ   81 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCccccchhhhHHHHHHHHhhhhhhhhhhhhhhhhcccceeeeccce
Confidence            357999999999999999999999998877655543221111              112222234456778888888888


Q ss_pred             EEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccC---hhhhhcccccCCCcEEeCCCCCCCCCCeEEcCcccccccc
Q 013952          227 AVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL---ISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMK  303 (433)
Q Consensus       227 v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~---~~~~~~~~~~~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~  303 (433)
                      +..+..  +.  ..+...++.++++|.+++++|.+|+   ..+........++++.||++|||+.|+|||+|||+..+..
T Consensus        82 ~~~~~~--~~--~~v~~~~~~~i~~d~~i~~~G~~~~~~~~~~~~~~~~~~~~~i~Vd~~~~ts~~~vya~GD~~~~~~~  157 (185)
T d1q1ra1          82 VTAINR--DR--QQVILSDGRALDYDRLVLATGGRPLIPNCELASAAGLQVDNGIVINEHMQTSDPLIMAVGDCARFHSQ  157 (185)
T ss_dssp             EEEEET--TT--TEEEETTSCEEECSEEEECCCEEEEEECCHHHHHTTCCBSSSEECCTTSBCSSTTEEECGGGEEEEET
T ss_pred             eeeecc--cc--cEEEeeceeEEEeeeeeeeeecccCCCCchhHHhCCccccCccccCCccccchhhhhcchhhhccccc
Confidence            888865  33  3577888889999999999998764   4454433323467899999999999999999999999988


Q ss_pred             ccCcccccccHHHHHHHHHHHHHHHhcc
Q 013952          304 LYREMRRVEHVDHARKSAEQAVKTIMAT  331 (433)
Q Consensus       304 ~~~~~~~~~~~~~A~~~g~~aa~~i~~~  331 (433)
                      .++.+.+.+++..|.+||+.||+||+++
T Consensus       158 ~~~~~~~~~~a~~A~~~g~~aa~~i~G~  185 (185)
T d1q1ra1         158 LYDRWVRIESVPNALEQARKIAAILCGK  185 (185)
T ss_dssp             TTTEEEECCSHHHHHHHHHHHHHHHTTC
T ss_pred             cCCcccchhhHHHHHHHHHHHHHHccCC
Confidence            8888878889999999999999999863

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.86  E-value=2.8e-21  Score=159.74  Aligned_cols=152  Identities=25%  Similarity=0.349  Sum_probs=117.8

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHH-------------HHHHHHHHHhcCcEEEcCCeEEEE
Q 013952          164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADI-------------AAFYEGYYANKGIKIIKGTVAVGF  230 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~-------------~~~l~~~l~~~GV~v~~~~~v~~i  230 (433)
                      ||+|||+|++|+|+|..|++ +.+|+++++.+.+..  .++.+             .....+.+++.++++++++.++.+
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i   78 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPYY--SKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKLI   78 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSCCC--CSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEEEE
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEEEeccccccc--cccchhhhhhhhhhhhhhhHHHHHHHHhccceeeeecccccc
Confidence            79999999999999999975 679999988664321  12222             122245678889999999999999


Q ss_pred             EecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhhhcccccCCCcEEeCCCCCCCCCCeEEcCccccccccccCcccc
Q 013952          231 TTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRR  310 (433)
Q Consensus       231 ~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~~~~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~  310 (433)
                      +.  +.+   +.+.++.++++|.+++|+|..|+..+...++..++ ++.||+++||+.|+|||+|||+..+...      
T Consensus        79 ~~--~~~---~~~~~~~~i~~D~li~a~G~~~~~~~~~~gl~~~~-~i~v~~~~~t~~~~i~aiGD~~~~~~~~------  146 (167)
T d1xhca1          79 DR--GRK---VVITEKGEVPYDTLVLATGAPNVDLARRSGIHTGR-GILIDDNFRTSAKDVYAIGDCAEYSGII------  146 (167)
T ss_dssp             ET--TTT---EEEESSCEEECSEEEECCCEECCHHHHHTTCCBSS-SEECCTTSBCSSTTEEECGGGEEBTTBC------
T ss_pred             cc--ccc---cccccccccccceeEEEEEecCCchhhhcCceeCC-ceeeccccEecCCCeEEeeecccCCCeE------
Confidence            75  332   34456678999999999999876544455666554 5999999999999999999999876432      


Q ss_pred             cccHHHHHHHHHHHHHHHhc
Q 013952          311 VEHVDHARKSAEQAVKTIMA  330 (433)
Q Consensus       311 ~~~~~~A~~~g~~aa~~i~~  330 (433)
                      ...+..|.++|+.+|+||.+
T Consensus       147 ~~~~~~a~~~a~~~a~~i~G  166 (167)
T d1xhca1         147 AGTAKAAMEQARVLADILKG  166 (167)
T ss_dssp             CCSHHHHHHHHHHHHHHHTT
T ss_pred             EChHHHHHHHHHHHHHHcCC
Confidence            25778899999999999976

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.86  E-value=4.6e-21  Score=147.84  Aligned_cols=118  Identities=35%  Similarity=0.608  Sum_probs=108.6

Q ss_pred             CCCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHH
Q 013952          133 VEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEG  212 (433)
Q Consensus       133 ~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~  212 (433)
                      +||.+. +++++++++++.++++.++  ++++++|||+|++|+|+|..|++.|.+|+++++.++++++.+++++++.+.+
T Consensus         4 ipG~~~-~v~~lrtl~Da~~l~~~~~--~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~   80 (121)
T d1d7ya2           4 LQGATM-PVHTLRTLEDARRIQAGLR--PQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVAR   80 (121)
T ss_dssp             GTTCSS-CEEECCSHHHHHHHHHHCC--TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHH
T ss_pred             CCCCCC-CEEEeCCHHHHHHHHHhhh--cCCeEEEECcchhHHHHHHHhhcccceEEEEeeccccccccCCHHHHHHHHH
Confidence            688764 4999999999999988886  4789999999999999999999999999999999999987789999999999


Q ss_pred             HHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEccc
Q 013952          213 YYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVG  259 (433)
Q Consensus       213 ~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G  259 (433)
                      .++++||++++++.++++..   +   .+.++||++++||.||+|+|
T Consensus        81 ~l~~~GV~i~~~~~v~~~~~---~---~v~l~dg~~i~~D~vi~a~G  121 (121)
T d1d7ya2          81 YHAAQGVDLRFERSVTGSVD---G---VVLLDDGTRIAADMVVVGIG  121 (121)
T ss_dssp             HHHTTTCEEEESCCEEEEET---T---EEEETTSCEEECSEEEECSC
T ss_pred             HHHHCCcEEEeCCEEEEEeC---C---EEEECCCCEEECCEEEEeeC
Confidence            99999999999999998864   3   57889999999999999998

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.85  E-value=1.1e-20  Score=146.63  Aligned_cols=123  Identities=26%  Similarity=0.392  Sum_probs=112.0

Q ss_pred             CCCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHH
Q 013952          133 VEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEG  212 (433)
Q Consensus       133 ~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~  212 (433)
                      +||.+.++++++++++++.++++.+.+..+++++|||+|++|+|+|..|++.|.+||++++.++++++.+++++++.+.+
T Consensus         1 IPG~d~~~v~~~~~~~da~~i~~~~~~~~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~~~~d~~~~~~~~~   80 (123)
T d1nhpa2           1 IPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTE   80 (123)
T ss_dssp             STTTTSBSEECCCHHHHHHHHHHHHTCTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHH
T ss_pred             CcCCCCCCeEEeCCHHHHHHHHHHhhccCCCEEEEECChHHHHHHHHHhhccceEEEEEEecCcccccccchhhHHHHHH
Confidence            47888899999999999999999987767899999999999999999999999999999999999988789999999999


Q ss_pred             HHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcc
Q 013952          213 YYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGV  258 (433)
Q Consensus       213 ~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~  258 (433)
                      .++++||++++++.+++++.  ++.+..+ +.+|++++||.||+|+
T Consensus        81 ~l~~~gv~~~~~~~v~~i~~--~~~~~~v-~~dg~~i~~D~vi~aI  123 (123)
T d1nhpa2          81 EMEANNITIATGETVERYEG--DGRVQKV-VTDKNAYDADLVVVAV  123 (123)
T ss_dssp             HHHTTTEEEEESCCEEEEEC--SSBCCEE-EESSCEEECSEEEECS
T ss_pred             HhhcCCeEEEeCceEEEEEc--CCCEEEE-EeCCCEEECCEEEEEC
Confidence            99999999999999999986  5555445 5678899999999984

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=5.4e-21  Score=165.69  Aligned_cols=55  Identities=24%  Similarity=0.315  Sum_probs=46.6

Q ss_pred             ccccc-CCCcEEeCCCCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCC
Q 013952          269 GQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEG  333 (433)
Q Consensus       269 ~~~~~-~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~  333 (433)
                      .++.+ ++|+|.||+++|||.|+|||+|||++.+          .+...|..+|+.||++|++...
T Consensus       161 ~gv~~~~~G~I~vd~~~~T~~~gvyA~GDv~~~~----------~l~~~A~~~G~~aa~~~~~~~~  216 (221)
T d3grsa1         161 LGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKA----------LLTPVAIAAGRKLAHRLFEYKE  216 (221)
T ss_dssp             TTCCBCTTSCBCCCTTCBCSSTTEEECGGGGTSS----------CCHHHHHHHHHHHHHHHHSCCT
T ss_pred             cCcEECCCccEEeCCCccccCCcEEEEEEccCCc----------CcHHHHHHHHHHHHHHHcCCCC
Confidence            35566 6789999999999999999999999865          3466789999999999998653

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.81  E-value=3.5e-19  Score=139.82  Aligned_cols=120  Identities=34%  Similarity=0.617  Sum_probs=110.1

Q ss_pred             CCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhc
Q 013952          138 AKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK  217 (433)
Q Consensus       138 ~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~  217 (433)
                      ..+++++++++++..+++.++  .+++++|||+|++|+|+|..|++.|.+|+++++.+++++..+++++.+.+++.++++
T Consensus        13 ~~~v~~lr~~~d~~~l~~~~~--~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~~~~~~~~~~~~~~~~~~   90 (133)
T d1q1ra2          13 ANNFRYLRTLEDAECIRRQLI--ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREA   90 (133)
T ss_dssp             STTEEESSSHHHHHHHHHTCC--TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHH
T ss_pred             cCCeeEeCCHHHHHHHHHhhc--cCCEEEEECCchHHHHHHHHHHhhCcceeeeeecccccccccchhhhhhhhhccccc
Confidence            467999999999999888775  478999999999999999999999999999999999998888999999999999999


Q ss_pred             CcEEEcCCeEEEEEecC-CCcEEEEEeCCCcEEECCEEEEccc
Q 013952          218 GIKIIKGTVAVGFTTNA-DGEVKEVKLKDGRTLEADIVVVGVG  259 (433)
Q Consensus       218 GV~v~~~~~v~~i~~~~-~g~~~~v~~~~g~~i~~d~vi~a~G  259 (433)
                      ||++++++.+++++... ++.+..+.+++|+++++|.||+|+|
T Consensus        91 GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~G  133 (133)
T d1q1ra2          91 GVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG  133 (133)
T ss_dssp             TCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred             ccEEEeCCeEEEEEEeCCCceEEEEECCCCCEEECCEEEEeeC
Confidence            99999999999998743 4567789999999999999999998

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.80  E-value=5.4e-20  Score=160.39  Aligned_cols=112  Identities=20%  Similarity=0.240  Sum_probs=80.1

Q ss_pred             HHHHHHHhcCcEEEcCCeEEEEEec--CCCcEEEEEeCCCc--EEECCEEEEcccCccChhhh------------hcccc
Q 013952          209 FYEGYYANKGIKIIKGTVAVGFTTN--ADGEVKEVKLKDGR--TLEADIVVVGVGGRPLISLF------------KGQVA  272 (433)
Q Consensus       209 ~l~~~l~~~GV~v~~~~~v~~i~~~--~~g~~~~v~~~~g~--~i~~d~vi~a~G~~p~~~~~------------~~~~~  272 (433)
                      .+...++..||+++.+.... +...  .......+...+|+  ++++|.+++|+|.+|.....            ..+++
T Consensus        99 ~~~~~~~~~gV~vi~G~~~~-~~~~~~~~~~~v~v~~~dg~~~~i~ad~viiAtG~~p~~~~~~~~~~~~~l~l~~~gv~  177 (233)
T d1xdia1          99 DITAQLLSMGVQVIAGRGEL-IDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRILPSGSVPNTSGLGLERVGIQ  177 (233)
T ss_dssp             HHHHHHHHTTCEEEESEEEE-CCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEECCCGGCEEECCSSSCTTTTTCC
T ss_pred             ceehhhcccceeEEECcccc-cccccccccceEEEEecCCceeeeecceeeeecCcccccccccccccccccccchhhhc
Confidence            34556778888888763211 1110  01123455556663  69999999999998865322            23455


Q ss_pred             c-CCCcEEeCCCCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhcc
Q 013952          273 E-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMAT  331 (433)
Q Consensus       273 ~-~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~  331 (433)
                      + ++|+|.||++|||+.|+|||+|||++.+          .+...|..+|++||.||++.
T Consensus       178 ~~~~G~I~vd~~~~T~~~gIyA~GDv~~~~----------~l~~~A~~~g~~aa~~~~g~  227 (233)
T d1xdia1         178 LGRGNYLTVDRVSRTLATGIYAAGDCTGLL----------PLASVAAMQGRIAMYHALGE  227 (233)
T ss_dssp             CBTTTBCCCCSSSBCSSTTEEECSGGGTSC----------SCHHHHHHHHHHHHHHHTTC
T ss_pred             ccCCCcCCcCCCcccCCCCEEEEEEeCCCc----------hhHHHHHHHHHHHHHHHcCC
Confidence            5 5688999999999999999999998865          45667899999999999975

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.79  E-value=3.6e-19  Score=137.83  Aligned_cols=121  Identities=23%  Similarity=0.477  Sum_probs=106.4

Q ss_pred             CccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCC
Q 013952          124 TVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFT  203 (433)
Q Consensus       124 ~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~  203 (433)
                      +|+.|+   +||.  +++++++++.++.++.+.++.  +++++|||+|++|+|+|..|++.|.+||++++.+.+++  ++
T Consensus         1 R~r~p~---ipG~--e~~~t~~~~~d~~~l~~~~~~--~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~~--~d   71 (122)
T d1xhca2           1 RAREPQ---IKGK--EYLLTLRTIFDADRIKESIEN--SGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG--LD   71 (122)
T ss_dssp             EECCCC---SBTG--GGEECCCSHHHHHHHHHHHHH--HSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT--CC
T ss_pred             CCCCcC---CCCc--cceEccCCHHHHHHHHHHhhc--CCcEEEECCcHHHHHHHHHhhcccceEEEEeccccccC--CC
Confidence            356676   6775  469999999999999998874  68999999999999999999999999999999998886  79


Q ss_pred             HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013952          204 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG  260 (433)
Q Consensus       204 ~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~  260 (433)
                      +++.+.+.+.++++||++++++++.+++.  ++    + +.+++.+++|.+|+|+|.
T Consensus        72 ~~~~~~~~~~l~~~GV~~~~~~~v~~~~~--~~----v-~~~~~~i~~D~vi~a~Gv  121 (122)
T d1xhca2          72 EELSNMIKDMLEETGVKFFLNSELLEANE--EG----V-LTNSGFIEGKVKICAIGI  121 (122)
T ss_dssp             HHHHHHHHHHHHHTTEEEECSCCEEEECS--SE----E-EETTEEEECSCEEEECCE
T ss_pred             HHHHHHHHHHHHHCCcEEEeCCEEEEEeC--CE----E-EeCCCEEECCEEEEEEEe
Confidence            99999999999999999999999999864  33    3 346778999999999994

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=2.1e-18  Score=132.06  Aligned_cols=97  Identities=23%  Similarity=0.370  Sum_probs=90.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEE
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE  240 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~  240 (433)
                      .|++++|||+|++|+|+|..|+++|.+||++++.+++++. +++++.+.+.+.++++||++++++.++++..++++. ..
T Consensus        20 ~p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~~-~d~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~~~-~~   97 (116)
T d1gesa2          20 LPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPS-FDPMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGS-LT   97 (116)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHHSCEEECSCCEEEEEECTTSC-EE
T ss_pred             CCCEEEEECCChhhHHHHHHhhccccEEEEEeecchhhhh-cchhhHHHHHHHHHHCCCEEEeCCEEEEEEEcCCcE-EE
Confidence            5799999999999999999999999999999999999987 799999999999999999999999999998855554 46


Q ss_pred             EEeCCCcEEECCEEEEccc
Q 013952          241 VKLKDGRTLEADIVVVGVG  259 (433)
Q Consensus       241 v~~~~g~~i~~d~vi~a~G  259 (433)
                      +++++|+++++|.||+|+|
T Consensus        98 v~~~~g~~~~~D~vi~a~G  116 (116)
T d1gesa2          98 LELEDGRSETVDCLIWAIG  116 (116)
T ss_dssp             EEETTSCEEEESEEEECSC
T ss_pred             EEECCCCEEEcCEEEEecC
Confidence            8899999999999999998

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=8e-18  Score=132.97  Aligned_cols=118  Identities=25%  Similarity=0.417  Sum_probs=106.6

Q ss_pred             CCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHH----hCCCeEEEEccCCccCCCCCCHHHHHHHHHHH
Q 013952          139 KNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALK----INNIDVSMVYPEPWCMPRLFTADIAAFYEGYY  214 (433)
Q Consensus       139 ~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~----~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l  214 (433)
                      ++++.+++++++.++.+.++.  +++++|||+|++|+|+|..|.    ..|.+|+++++.+.++++.+|+++++.+.+.+
T Consensus        16 ~~~~~~r~~~d~~~l~~~~~~--~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~~~~~~~~~~~~~~l   93 (137)
T d1m6ia2          16 SRTTLFRKIGDFRSLEKISRE--VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKV   93 (137)
T ss_dssp             HTEEECCSHHHHHHHHHHHHH--CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHH
T ss_pred             CcEEEEcCHHHHHHHHHHhhc--CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCcccCCHHHHHHHHHHH
Confidence            568889999999999988874  789999999999999999985    35899999999999998879999999999999


Q ss_pred             HhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013952          215 ANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG  260 (433)
Q Consensus       215 ~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~  260 (433)
                      +++||++++++.|++++.  ++....+++++|++++||.||+|+|.
T Consensus        94 ~~~GV~~~~~~~V~~i~~--~~~~~~v~l~~G~~i~aD~Vi~A~Gv  137 (137)
T d1m6ia2          94 RREGVKVMPNAIVQSVGV--SSGKLLIKLKDGRKVETDHIVAAVGL  137 (137)
T ss_dssp             HTTTCEEECSCCEEEEEE--ETTEEEEEETTSCEEEESEEEECCCE
T ss_pred             HhCCcEEEeCCEEEEEEe--cCCEEEEEECCCCEEECCEEEEeecC
Confidence            999999999999999987  33345799999999999999999984

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.77  E-value=6e-18  Score=146.38  Aligned_cols=156  Identities=21%  Similarity=0.269  Sum_probs=113.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc------------------------------C----CCCCCH----
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC------------------------------M----PRLFTA----  204 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~------------------------------~----~~~~~~----  204 (433)
                      ..++|||+|+.|+++|..+++.|.+|+++++...-                              .    ...++.    
T Consensus         4 ~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (223)
T d1ebda1           4 TETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDFAKVQ   83 (223)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEECHHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCEEEEEecCCCCcceeccccccccccccccchhhhhhhhhhhcccchhheeeHHHHh
Confidence            36899999999999999999999999999765310                              0    000111    


Q ss_pred             --------HHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcc--------cCccChhhh-
Q 013952          205 --------DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGV--------GGRPLISLF-  267 (433)
Q Consensus       205 --------~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~--------G~~p~~~~~-  267 (433)
                              .+.+.+...++..||+++.+.  ..+..  ..........++..+.++.+|+++        |++||++.+ 
T Consensus        84 ~~~~~~v~~l~~~~~~~~~~~~V~~i~G~--a~f~~--~~~~~v~~~~~~~~~~~~~iiIa~g~~p~~~~G~~p~~~~l~  159 (223)
T d1ebda1          84 EWKASVVKKLTGGVEGLLKGNKVEIVKGE--AYFVD--ANTVRVVNGDSAQTYTFKNAIIATGSRPIELVGRRPNTDELG  159 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCEEEESE--EEEEE--TTEEEEEETTEEEEEECSEEEECCCEEECCBSCEEESCSSSS
T ss_pred             hHHHHHHHHHHhhHHHhhhccceeeeccE--EEEcc--CcccceeccccceEEecccEEEEcCCCccccccceecCCCCC
Confidence                    123344456677899998774  22332  222222223344678999999985        888988854 


Q ss_pred             --hccccc-CCCcEEeCCCCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccC
Q 013952          268 --KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE  332 (433)
Q Consensus       268 --~~~~~~-~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~  332 (433)
                        +.++++ ++|+|.||++||||.|+|||+|||++.+          .++..|..+|+.||++|++..
T Consensus       160 l~~~gv~~~~~G~I~vd~~~~T~~~gvyA~GDv~~~~----------~~~~~A~~~g~~aa~~i~g~~  217 (223)
T d1ebda1         160 LEQIGIKMTNRGLIEVDQQCRTSVPNIFAIGDIVPGP----------ALAHKASYEGKVAAEAIAGHP  217 (223)
T ss_dssp             TTTTTCCBCTTSCBCCCTTCBCSSTTEEECGGGSSSC----------CCHHHHHHHHHHHHHHHTSCC
T ss_pred             hHhcCceECCCCCEeECCCCCCCCCCEEEEeccCCCc----------ccHHHHHHHHHHHHHHHcCCC
Confidence              446777 6789999999999999999999999876          356778999999999999763

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.76  E-value=2.7e-18  Score=132.49  Aligned_cols=96  Identities=23%  Similarity=0.392  Sum_probs=87.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEE
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE  240 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~  240 (433)
                      .|++++|||+|++|+|+|..|+++|.+||++++.+++++. +++++.+.+++.++++||++++++++++++.++++....
T Consensus        22 ~p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l~~-~d~ei~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~  100 (122)
T d1v59a2          22 IPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGAS-MDGEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVE  100 (122)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSS-SCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEE
T ss_pred             CCCeEEEECCCchHHHHHHHHHhhCcceeEEEeccccchh-hhhhhHHHHHHHHHhccceEEeCCEEEEEEEeCCCcEEE
Confidence            4899999999999999999999999999999999999987 899999999999999999999999999998877777667


Q ss_pred             EEeCCC-----cEEECCEEEEc
Q 013952          241 VKLKDG-----RTLEADIVVVG  257 (433)
Q Consensus       241 v~~~~g-----~~i~~d~vi~a  257 (433)
                      +.+.++     +++++|.|++|
T Consensus       101 ~~~~~~~~~~~~~ie~D~vlvA  122 (122)
T d1v59a2         101 IVVEDTKTNKQENLEAEVLLVA  122 (122)
T ss_dssp             EEEEETTTTEEEEEEESEEEEC
T ss_pred             EEEEeCCCCCeEEEEeCEEEEC
Confidence            766543     47999999986

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.75  E-value=6.7e-18  Score=149.63  Aligned_cols=153  Identities=23%  Similarity=0.259  Sum_probs=107.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCC-------------------------------------CCC-H
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR-------------------------------------LFT-A  204 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~-------------------------------------~~~-~  204 (433)
                      -.++|||+|+.|+++|..+++.|.+|+++++.+.+...                                     ..+ .
T Consensus        43 yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lGG~c~n~GcvP~k~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (261)
T d1mo9a1          43 YDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKVVGIK  122 (261)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCCTTCCCCHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCccccccccccccchHHHHhhHHhHHHHHHhhhhccccccccccccHH
Confidence            36999999999999999999999999999876643110                                     000 0


Q ss_pred             HHHHH------------HHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhhh----
Q 013952          205 DIAAF------------YEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFK----  268 (433)
Q Consensus       205 ~~~~~------------l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~~----  268 (433)
                      ...+.            ..+..+..++....+....-+.   +.   .+. .+|++++||.+++|+|.+|++..+.    
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d---~~---~v~-~~g~~i~ad~viiAtG~~P~~~~i~~~~~  195 (261)
T d1mo9a1         123 EVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVID---NH---TVE-AAGKVFKAKNLILAVGAGPGTLDVPEQPR  195 (261)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEE---TT---EEE-ETTEEEEBSCEEECCCEECCCCCSTCEEC
T ss_pred             HHHHHHHHHHHhhhhhHHHHhhhcccceeEeeeEEEEee---ec---ccc-cccceEeeeeeeeccCCCCCcCccccccc
Confidence            11110            1112233344443333322221   11   222 3567899999999999999876442    


Q ss_pred             -------ccccc-CCCcEEeCCCCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccC
Q 013952          269 -------GQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE  332 (433)
Q Consensus       269 -------~~~~~-~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~  332 (433)
                             .++++ ++|+|.||++|||+.|+|||+|||++.+          .++..|..+|++||.||++..
T Consensus       196 ~~~l~~~~Gl~~~~~G~I~Vn~~~~Ts~~~IyA~GDv~~~~----------~l~~~A~~~G~~aa~~i~G~k  257 (261)
T d1mo9a1         196 SAELAKILGLDLGPKGEVLVNEYLQTSVPNVYAVGDLIGGP----------MEMFKARKSGCYAARNVMGEK  257 (261)
T ss_dssp             CHHHHHHHTCCBCTTSCBCCCTTSBCSSTTEEECGGGGCSS----------CSHHHHHHHHHHHHHHHTTCC
T ss_pred             ccccccceeeeeccCCEEEeCCCcccCCCCEEEEEEeCCCc----------ccHHHHHHHHHHHHHHHCCCC
Confidence                   24666 6788999999999999999999999876          457779999999999999754

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.75  E-value=5.7e-18  Score=130.16  Aligned_cols=112  Identities=25%  Similarity=0.335  Sum_probs=93.8

Q ss_pred             CCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHh
Q 013952          137 DAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYAN  216 (433)
Q Consensus       137 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~  216 (433)
                      +.+.++++.+..+...        .|++++|||+|++|+|+|..|++.|++|+++.+.+++++. +++++.+.+++.+++
T Consensus         5 d~~~v~~s~~~l~l~~--------~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~~-~d~ei~~~l~~~l~~   75 (119)
T d3lada2           5 DQDVIVDSTGALDFQN--------VPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPA-VDEQVAKEAQKILTK   75 (119)
T ss_dssp             CSSSEEEHHHHTSCSS--------CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-SCHHHHHHHHHHHHH
T ss_pred             CCCEEEchhHhhCccc--------CCCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccCCc-ccchhHHHHHHHHHh
Confidence            4467776544333222        5899999999999999999999999999999999999986 899999999999999


Q ss_pred             cCcEEEcCCeEEEEEecCCCcEEEEEeCCC---cEEECCEEEEccc
Q 013952          217 KGIKIIKGTVAVGFTTNADGEVKEVKLKDG---RTLEADIVVVGVG  259 (433)
Q Consensus       217 ~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g---~~i~~d~vi~a~G  259 (433)
                      +||++++++++++++.++++  ..+++.++   +++++|.|++|+|
T Consensus        76 ~Gv~i~~~~~v~~i~~~~~~--v~v~~~~~~~~~~~~~D~vlvAvG  119 (119)
T d3lada2          76 QGLKILLGARVTGTEVKNKQ--VTVKFVDAEGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             TTEEEEETCEEEEEEECSSC--EEEEEESSSEEEEEEESEEEECSC
T ss_pred             cCceeecCcEEEEEEEeCCE--EEEEEEECCCCEEEECCEEEEeeC
Confidence            99999999999999985444  34554433   5799999999998

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.74  E-value=2.2e-18  Score=133.19  Aligned_cols=99  Identities=21%  Similarity=0.268  Sum_probs=88.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEE
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE  240 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~  240 (433)
                      .|++++|||+|++|+|+|..|+++|.+||++++.+++++. +|+++.+.+++.++++||++++++++.+++..+++....
T Consensus        25 ~p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~~-~d~~~~~~l~~~l~~~gv~~~~~~~v~~v~~~~~g~~v~  103 (125)
T d1ojta2          25 VPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQG-ADRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVT  103 (125)
T ss_dssp             CCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-SCHHHHHHHHHHHGGGEEEEECSCEEEEEEEETTEEEEE
T ss_pred             cCCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeecccccc-chhhHHHHHHHHHHHcCcccccCcEEEEEEEcCCcEEEE
Confidence            5899999999999999999999999999999999999986 799999999999999999999999999999855654434


Q ss_pred             EEeCCC--cEEECCEEEEcccC
Q 013952          241 VKLKDG--RTLEADIVVVGVGG  260 (433)
Q Consensus       241 v~~~~g--~~i~~d~vi~a~G~  260 (433)
                      ++..+|  +++++|.|++|+|+
T Consensus       104 ~~~~~g~~~~i~~D~vl~A~GR  125 (125)
T d1ojta2         104 FEGANAPKEPQRYDAVLVAAGR  125 (125)
T ss_dssp             EESSSCCSSCEEESCEEECCCE
T ss_pred             EEeCCCCeEEEEcCEEEEecCC
Confidence            444444  47999999999995

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.73  E-value=1.1e-17  Score=144.52  Aligned_cols=156  Identities=19%  Similarity=0.279  Sum_probs=113.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCC------------------------------------CC---
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL------------------------------------FT---  203 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~------------------------------------~~---  203 (433)
                      --++|||+|+.|+.+|..+++.|.+|+++++.+.+....                                    ..   
T Consensus         4 yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~GG~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~   83 (221)
T d1dxla1           4 NDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEIDLAA   83 (221)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEEECHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCCeeecchhhhhhhhhHhHHHHHHHhhhhhhcCeecccceecHHH
Confidence            368999999999999999999999999998765431100                                    00   


Q ss_pred             ---------HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcE-EEEEeCCCcEEECCEEEEccc-----CccChhhh-
Q 013952          204 ---------ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEV-KEVKLKDGRTLEADIVVVGVG-----GRPLISLF-  267 (433)
Q Consensus       204 ---------~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~-~~v~~~~g~~i~~d~vi~a~G-----~~p~~~~~-  267 (433)
                               ..+.+.+...++..+|+++....  .+..  .... ......++..+.+|.||+|||     ++|+++.+ 
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~--~~~~~~~~~~~~~~~~~a~~VIiATGs~~~gr~p~~~~l~  159 (221)
T d1dxla1          84 MMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYG--KFVS--PSEISVDTIEGENTVVKGKHIIIATGSDVKGRTPFTSGLN  159 (221)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCEEEESCE--EEEE--TTEEEECCSSSCCEEEECSEEEECCCEEECCEEECCTTSC
T ss_pred             HHHHHHHHHHHHhhHHHHhhhcCCeEEEEecc--cccc--ccccccccccccccccccceEEEeECCCccCccccCCCCC
Confidence                     12234455567778898876542  2221  1111 111223346789999999998     56787754 


Q ss_pred             --hccccc-CCCcEEeCCCCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccC
Q 013952          268 --KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE  332 (433)
Q Consensus       268 --~~~~~~-~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~  332 (433)
                        +.++++ +.|+|.||+++||++|+|||+|||+..+          .++..|..+|+.||++|+++.
T Consensus       160 l~~~gv~~~~~G~i~vd~~~~T~v~gi~A~GDv~~g~----------~l~~~A~~~g~~aa~~i~g~~  217 (221)
T d1dxla1         160 LDKIGVETDKLGRILVNERFSTNVSGVYAIGDVIPGP----------MLAHKAEEDGVACVEYLAGKV  217 (221)
T ss_dssp             CTTTTCCBCSSSCBCCCTTCBCSSTTEEECSTTSSSC----------CCHHHHHHHHHHHHHHHTTSC
T ss_pred             hHhcCceEcCCCcEEeCCCcccCCCCEEEEeccCCCc----------ccHHHHHHHHHHHHHHHcCCC
Confidence              346776 6789999999999999999999999876          457778899999999998764

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.73  E-value=1.1e-17  Score=127.84  Aligned_cols=96  Identities=26%  Similarity=0.357  Sum_probs=87.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEE
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE  240 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~  240 (433)
                      .+++++|||+|++|+|+|..|++.|.+||++++.+++++. +++++++.+++.++++||++++++.+++++..+++. ..
T Consensus        21 ~p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il~~-~d~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~-~~   98 (117)
T d1onfa2          21 ESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRK-FDESVINVLENDMKKNNINIVTFADVVEIKKVSDKN-LS   98 (117)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTT-SCHHHHHHHHHHHHHTTCEEECSCCEEEEEESSTTC-EE
T ss_pred             CCCEEEEECCchHHHHHHHHHHhccccceeeehhcccccc-ccHHHHHHHHHHHHhCCCEEEECCEEEEEEEcCCCe-EE
Confidence            4799999999999999999999999999999999999976 799999999999999999999999999998755664 47


Q ss_pred             EEeCCCcEEE-CCEEEEcc
Q 013952          241 VKLKDGRTLE-ADIVVVGV  258 (433)
Q Consensus       241 v~~~~g~~i~-~d~vi~a~  258 (433)
                      +++++|+.++ +|.|++|+
T Consensus        99 v~~~~G~~~~~~D~Vi~AI  117 (117)
T d1onfa2          99 IHLSDGRIYEHFDHVIYCV  117 (117)
T ss_dssp             EEETTSCEEEEESEEEECC
T ss_pred             EEECCCCEEEeCCEEEEeC
Confidence            8999998875 79999985

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.73  E-value=2.8e-17  Score=127.23  Aligned_cols=117  Identities=23%  Similarity=0.336  Sum_probs=97.6

Q ss_pred             CCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHH
Q 013952          136 ADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYA  215 (433)
Q Consensus       136 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~  215 (433)
                      .+.+++|...+      +.+.+...++++++|||+|++|+|+|..|++.|.+|+++++.+.+++. +++++++.+++.++
T Consensus         2 ~~~~gv~~~~~------~~~~l~~~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l~~-~d~~~~~~~~~~l~   74 (121)
T d1mo9a2           2 VNAKGVFDHAT------LVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLI-KDNETRAYVLDRMK   74 (121)
T ss_dssp             TTSBTEEEHHH------HHHHCCSCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTC-CSHHHHHHHHHHHH
T ss_pred             CCCCCEEeHHH------HHHHHhhCCCCEEEEECCCHHHHHHHHHHHhcchhheEeeccchhhcc-cccchhhhhhhhhh
Confidence            34567775443      333444446799999999999999999999999999999999999875 89999999999999


Q ss_pred             hcCcEEEcCCeEEEEEecCCCcEEEEE---eCCCcEEECCEEEEccc
Q 013952          216 NKGIKIIKGTVAVGFTTNADGEVKEVK---LKDGRTLEADIVVVGVG  259 (433)
Q Consensus       216 ~~GV~v~~~~~v~~i~~~~~g~~~~v~---~~~g~~i~~d~vi~a~G  259 (433)
                      ++||++++++.+.+++.++++....+.   ..++++++||.||+|+|
T Consensus        75 ~~gI~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2          75 EQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG  121 (121)
T ss_dssp             HTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred             ccccEEEcCCEEEEEEecCCceEEEEEEEeCCCCEEEEcCEEEEEEC
Confidence            999999999999999986677654443   23456899999999998

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.72  E-value=2.9e-17  Score=126.16  Aligned_cols=98  Identities=23%  Similarity=0.444  Sum_probs=88.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhC---CCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCc
Q 013952          161 KNGKAVVVGGGYIGLELSAALKIN---NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGE  237 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~---g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~  237 (433)
                      .|++++|||+|++|+|+|..|.++   |.+|+++++.+.+++. +++++++.+++.++++||++++++.+++|...+++.
T Consensus        17 ~p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~~-~d~~~~~~~~~~l~~~GI~v~~~~~v~~i~~~~~g~   95 (117)
T d1feca2          17 APKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRG-FDSELRKQLTEQLRANGINVRTHENPAKVTKNADGT   95 (117)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTT-SCHHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSC
T ss_pred             cCCeEEEECCChHHHHHHHHhHhhcccccccceeccccccccc-ccchhhHHHHHHHhhCcEEEEcCCEEEEEEECCCCE
Confidence            479999999999999999887654   8899999999999986 899999999999999999999999999998755554


Q ss_pred             EEEEEeCCCcEEECCEEEEcccC
Q 013952          238 VKEVKLKDGRTLEADIVVVGVGG  260 (433)
Q Consensus       238 ~~~v~~~~g~~i~~d~vi~a~G~  260 (433)
                       ..+.+++|++++||.|++|+|+
T Consensus        96 -~~v~~~~g~~i~~D~Vi~a~GR  117 (117)
T d1feca2          96 -RHVVFESGAEADYDVVMLAIGR  117 (117)
T ss_dssp             -EEEEETTSCEEEESEEEECSCE
T ss_pred             -EEEEECCCCEEEcCEEEEecCC
Confidence             5789999999999999999995

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.71  E-value=1.4e-17  Score=128.76  Aligned_cols=97  Identities=31%  Similarity=0.444  Sum_probs=86.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEE
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE  240 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~  240 (433)
                      .|++++|||+|++|+|+|..|+++|.+||++++.+++++. +++++.+.+.+.++++||++++++++.+++..+++....
T Consensus        24 ~p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l~~-~d~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~~~~~v~  102 (123)
T d1dxla2          24 IPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPT-MDAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLT  102 (123)
T ss_dssp             CCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHSSCCEECSEEEEEEECSSSSEEEE
T ss_pred             cCCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccCch-hhhcchhhhhhhhhcccceEEcCCceEEEEEccCeEEEE
Confidence            5899999999999999999999999999999999999986 899999999999999999999999999999866665555


Q ss_pred             EEeCCC---cEEECCEEEEcc
Q 013952          241 VKLKDG---RTLEADIVVVGV  258 (433)
Q Consensus       241 v~~~~g---~~i~~d~vi~a~  258 (433)
                      +...++   +.++||.|++|.
T Consensus       103 ~~~~~~g~~~~i~~D~vLvAA  123 (123)
T d1dxla2         103 VEPSAGGEQTIIEADVVLVSA  123 (123)
T ss_dssp             EEESSSCCCEEEEESEEECCC
T ss_pred             EEECCCCeEEEEEcCEEEEcC
Confidence            655443   458999999873

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.71  E-value=7.9e-17  Score=135.64  Aligned_cols=157  Identities=15%  Similarity=0.148  Sum_probs=123.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC--------------------CCCCCHHHHHHHHHHHHhcCcEE
Q 013952          162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM--------------------PRLFTADIAAFYEGYYANKGIKI  221 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~--------------------~~~~~~~~~~~l~~~l~~~GV~v  221 (433)
                      .++|+|||+|++|+++|..+++.|.++.++++.....                    .....+++...+++.+++.|+++
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~q~~~~g~~i   84 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTTI   84 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEE
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecccccccccccccchhhhccccccccccchHHHHHHHHHHHhhccee
Confidence            4689999999999999999999999999997543210                    01124678888888888999999


Q ss_pred             EcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC-----ccChhhhhccccc-CCCcEEeCC-CCCCCCCCeEEc
Q 013952          222 IKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG-----RPLISLFKGQVAE-NKGGIETDD-FFKTSADDVYAV  294 (433)
Q Consensus       222 ~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~-----~p~~~~~~~~~~~-~~g~i~vd~-~~~t~~~~vfa~  294 (433)
                      ... .|.+++.  .++...+.+.. ....+|.+++++|.     .|++.++..++++ ++|+|.+|+ +++|+.|+|||+
T Consensus        85 ~~~-~V~~~~~--~~~~~~v~~~~-~~~~~~~~~~a~g~~~~g~~p~~~~~~~~veld~~G~i~~~~~~~~Ts~~GV~a~  160 (192)
T d1vdca1          85 FTE-TVTKVDF--SSKPFKLFTDS-KAILADAVILAIGAVAKGHEPATKFLDGGVELDSDGYVVTKPGTTQTSVPGVFAA  160 (192)
T ss_dssp             ECC-CCCEEEC--SSSSEEEECSS-EEEEEEEEEECCCEEECCEEESCGGGTTSSCBCTTSCBCCCTTSCBCSSTTEEEC
T ss_pred             eee-eEEeccc--ccCcEEecccc-eeeeeeeEEEEeeeeecccCchHHHhcCceeecCCCeEEeCCCceEecCCCEEEe
Confidence            866 5778876  33334555444 57899999999984     5888888888887 678999996 799999999999


Q ss_pred             CccccccccccCcccccccHHHHHHHHHHHHHHHhcc
Q 013952          295 GDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMAT  331 (433)
Q Consensus       295 Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~  331 (433)
                      |||...+.         +....|..+|..||.++...
T Consensus       161 GDv~~~~~---------r~~v~A~g~G~~aA~~~~~y  188 (192)
T d1vdca1         161 GDVQDKKY---------RQAITAAGTGCMAALDAEHY  188 (192)
T ss_dssp             GGGGCSSC---------CCHHHHHHHHHHHHHHHHHH
T ss_pred             eecCCccc---------ceEEEEEechHHHHHHHHHH
Confidence            99988664         35677888999999887643

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=99.70  E-value=9.8e-17  Score=134.90  Aligned_cols=158  Identities=15%  Similarity=0.133  Sum_probs=121.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc---------------CCCCCCHHHHHHHHHHHHhcCcEEEcCC
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC---------------MPRLFTADIAAFYEGYYANKGIKIIKGT  225 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~---------------~~~~~~~~~~~~l~~~l~~~GV~v~~~~  225 (433)
                      +.++|+|||+|++|+++|..+++.|.+|+++++.+..               .....+.++.+.+.+.+.+.++++..+ 
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   82 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD-   82 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECC-
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecccccccccchhhhhhccccccchHHHHHHHHHHHHhcCcEEecc-
Confidence            3578999999999999999999999999999865321               111234677888888889999999865 


Q ss_pred             eEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc-----ChhhhhcccccCCCcEEeCC-----CCCCCCCCeEEcC
Q 013952          226 VAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP-----LISLFKGQVAENKGGIETDD-----FFKTSADDVYAVG  295 (433)
Q Consensus       226 ~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p-----~~~~~~~~~~~~~g~i~vd~-----~~~t~~~~vfa~G  295 (433)
                      .|.++..  .+....+...+ ..+.++.+++++|..|     +..++...+++++|+|.+|+     .++|++|+|||+|
T Consensus        83 ~V~~~~~--~~~~~~v~~~~-~~~~~~~viva~G~~~~~~~~~~~~~~~~~e~~~g~i~~~~~~~~~~~~T~v~gV~aaG  159 (190)
T d1trba1          83 HINKVDL--QNRPFRLNGDN-GEYTCDALIIATGASARYHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAG  159 (190)
T ss_dssp             CEEEEEC--SSSSEEEEESS-CEEEEEEEEECCCEEECCEEESCGGGTTTSCEETTEECCCCSSSSCTTBCSSTTEEECG
T ss_pred             eeEEEec--CCCcEEEEEee-eeEeeeeeeeecceeeeeecccceeecceEecCCcEEEEecCCcccccccccCeEEEeE
Confidence            6788876  33334565554 4799999999999654     45556666667789999994     4689999999999


Q ss_pred             ccccccccccCcccccccHHHHHHHHHHHHHHHhcc
Q 013952          296 DVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMAT  331 (433)
Q Consensus       296 d~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~  331 (433)
                      ||+..+.         +++..|..+|..||.++...
T Consensus       160 Dv~~~~~---------~q~i~Aag~G~~AA~~a~~y  186 (190)
T d1trba1         160 DVMDHIY---------RQAITSAGTGCMAALDAERY  186 (190)
T ss_dssp             GGGCSSS---------CCHHHHHHHHHHHHHHHHHH
T ss_pred             EecCcce---------eEEEEEeccHHHHHHHHHHH
Confidence            9987553         46777888999999877654

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.69  E-value=7.3e-17  Score=123.84  Aligned_cols=94  Identities=30%  Similarity=0.495  Sum_probs=82.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEE
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE  240 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~  240 (433)
                      .|++++|||+|++|+|+|..|.++|.+||++++.+++++. +|+++++.+.+.++++||++++++.+++++..+++  ..
T Consensus        21 ~p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~~-~d~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~~~--~~   97 (117)
T d1ebda2          21 VPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG-FEKQMAAIIKKRLKKKGVEVVTNALAKGAEEREDG--VT   97 (117)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-SCHHHHHHHHHHHHHTTCEEEESEEEEEEEEETTE--EE
T ss_pred             cCCeEEEECCCccceeeeeeecccccEEEEEEecceeccc-ccchhHHHHHHHHHhcCCEEEcCCEEEEEEEcCCE--EE
Confidence            5899999999999999999999999999999999999987 89999999999999999999999999999874444  23


Q ss_pred             EEe-CCC--cEEECCEEEEc
Q 013952          241 VKL-KDG--RTLEADIVVVG  257 (433)
Q Consensus       241 v~~-~~g--~~i~~d~vi~a  257 (433)
                      +.+ .+|  +++++|.|+++
T Consensus        98 v~~~~~g~~~~i~~D~Vlvs  117 (117)
T d1ebda2          98 VTYEANGETKTIDADYVLVT  117 (117)
T ss_dssp             EEEEETTEEEEEEESEEEEC
T ss_pred             EEEEeCCCEEEEEeEEEEEC
Confidence            433 333  56999999974

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=99.69  E-value=6.8e-17  Score=135.15  Aligned_cols=161  Identities=20%  Similarity=0.269  Sum_probs=116.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCC--CeEEEEccCCccCCCCCCHHHHH---------HHHHHHHhcCcEEEcCCeEEEE
Q 013952          162 NGKAVVVGGGYIGLELSAALKINN--IDVSMVYPEPWCMPRLFTADIAA---------FYEGYYANKGIKIIKGTVAVGF  230 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g--~~V~li~~~~~~~~~~~~~~~~~---------~l~~~l~~~GV~v~~~~~v~~i  230 (433)
                      +|+|+|||+|++|+|+|..|.+.+  .+|+++++.+.+...........         .....+...++.+..+.. ..+
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~   80 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGLRAHGIQVVHDSA-TGI   80 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECSTTHHHHHHTSSCGGGGEECSHHHHTTTEEEECCCE-EEC
T ss_pred             CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCccccccccccccchhhhhhhhhhhhhhccccceeEeeeee-Eee
Confidence            689999999999999999999987  48999999887655422222211         112244567788876643 333


Q ss_pred             EecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhhhc---------ccccCCCcEEeCCC-CC-CCCCCeEEcCcccc
Q 013952          231 TTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG---------QVAENKGGIETDDF-FK-TSADDVYAVGDVAT  299 (433)
Q Consensus       231 ~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~---------~~~~~~g~i~vd~~-~~-t~~~~vfa~Gd~~~  299 (433)
                      ..  ..  ..+.+.+++++++|.+|+|+|.+|++..+..         ++..+.+++.++++ ++ ++.++||++||++.
T Consensus        81 ~~--~~--~~~~~~~~~~i~~D~li~atG~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iGd~~~  156 (186)
T d1fcda1          81 DP--DK--KLVKTAGGAEFGYDRCVVAPGIELIYDKIEQRAGKIAQIAGLTNDAGWCPVDIKTFESSIHKGIHVIGDASI  156 (186)
T ss_dssp             CT--TT--TEEEETTSCEEECSEEEECCCEEECCTTSTEEECHHHHHHTCCCTTSSEEBCSSSCBBSSSTTEEECTTSEE
T ss_pred             ee--cc--ceeecccceeeccceEEEEeccccchhhhhhhhhhheeccCcccccccccceeeeeecccccCceEeccccc
Confidence            22  23  3467788899999999999999998875532         23345677777654 43 58999999999986


Q ss_pred             ccccccCcccccccHHHHHHHHHHHHHHHhccCCC
Q 013952          300 FPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGG  334 (433)
Q Consensus       300 ~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~  334 (433)
                      ....       ++.+..|..||+.+|+||.....|
T Consensus       157 ~~~~-------p~~~~~A~~q~~~~A~ni~~~~~G  184 (186)
T d1fcda1         157 ANPM-------PKSGYSANSQGKVAAAAVVVLLKG  184 (186)
T ss_dssp             CTTC-------CSSHHHHHHHHHHHHHHHHHHHHS
T ss_pred             cCCC-------CchHhHHHHHHHHHHHHHHHHhcC
Confidence            5432       167889999999999999876544

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.68  E-value=8.5e-17  Score=122.91  Aligned_cols=95  Identities=33%  Similarity=0.440  Sum_probs=82.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEE
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE  240 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~  240 (433)
                      .|++++|||+|++|+|+|..|++.|++||++++.+++++. +++++++.+++.++++||+++++++|++++.   +....
T Consensus        20 ~p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il~~-~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~---~~~~~   95 (115)
T d1lvla2          20 LPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPT-YDSELTAPVAESLKKLGIALHLGHSVEGYEN---GCLLA   95 (115)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHHTCEEETTCEEEEEET---TEEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHhhcccceEEEeeecccccc-ccchhHHHHHHHHHhhcceEEcCcEEEEEcC---CeEEE
Confidence            4799999999999999999999999999999999999987 7999999999999999999999999999863   32222


Q ss_pred             EEe-CCCcEEECCEEEEccc
Q 013952          241 VKL-KDGRTLEADIVVVGVG  259 (433)
Q Consensus       241 v~~-~~g~~i~~d~vi~a~G  259 (433)
                      ... .++++++||.|++|+|
T Consensus        96 ~~~~~~~~~i~~D~vi~A~G  115 (115)
T d1lvla2          96 NDGKGGQLRLEADRVLVAVG  115 (115)
T ss_dssp             ECSSSCCCEECCSCEEECCC
T ss_pred             EEcCCCeEEEEcCEEEEecC
Confidence            222 2335799999999998

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.68  E-value=1.1e-17  Score=146.37  Aligned_cols=76  Identities=30%  Similarity=0.464  Sum_probs=63.4

Q ss_pred             cEEECCEEEEcccCccChh-----------hhhccccc-CCCcEEeCCCCCCCCCCeEEcCccccccccccCcccccccH
Q 013952          247 RTLEADIVVVGVGGRPLIS-----------LFKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHV  314 (433)
Q Consensus       247 ~~i~~d~vi~a~G~~p~~~-----------~~~~~~~~-~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~  314 (433)
                      +.+.+|.+++++|.+|...           +...++.+ ++|+|.||++||||.|+|||+|||++.+.          +.
T Consensus       148 e~i~~~~i~ia~G~~p~~~~~~~~~~~~l~l~~~gv~~~~~G~I~vd~~~~Ts~~~iyA~GDv~~~~~----------~~  217 (240)
T d1feca1         148 ETLDTEYILLATGSWPQHLGIEVPRSQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDVTDRVM----------LT  217 (240)
T ss_dssp             EEEEEEEEEECCCEEECCCCSBEESCTTSCGGGGTCCBCTTSCBCCCTTCBCSSTTEEECGGGGCSCC----------CH
T ss_pred             EEEecceEEEecCCceeEccccccccCCCCccccCeEECCCCcEEcCcccCcCCCCEEEEEECCCCcc----------ch
Confidence            4689999999999888644           22445666 67899999999999999999999998763          46


Q ss_pred             HHHHHHHHHHHHHHhccC
Q 013952          315 DHARKSAEQAVKTIMATE  332 (433)
Q Consensus       315 ~~A~~~g~~aa~~i~~~~  332 (433)
                      ..|..+|+.||+++++..
T Consensus       218 ~~A~~eg~~aa~~~~~~~  235 (240)
T d1feca1         218 PVAINEGAAFVDTVFANK  235 (240)
T ss_dssp             HHHHHHHHHHHHHHHSSC
T ss_pred             hhHHHHHHHHHHHHhCCC
Confidence            678999999999999854

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=4.5e-16  Score=135.51  Aligned_cols=155  Identities=16%  Similarity=0.135  Sum_probs=111.8

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC------------------------------------------C-
Q 013952          164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP------------------------------------------R-  200 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~------------------------------------------~-  200 (433)
                      .++|||+|+.|+.+|..+++.|.+|.+++..+....                                          . 
T Consensus         5 DviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~~~~~~~~~GG~c~~~g~~~~k~l~~~~~~~~~~~~~~~~gi~~~~~   84 (235)
T d1h6va1           5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPLGTNWGLGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWKLEDT   84 (235)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTTTTBCCCSC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccccccccccccccchhhhhhhhhhhhHhhhhhccccccccc
Confidence            589999999999999999999999999985432100                                          0 


Q ss_pred             -CCC-H-----------HHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCc--EEECCEEEEcccCccChh
Q 013952          201 -LFT-A-----------DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGR--TLEADIVVVGVGGRPLIS  265 (433)
Q Consensus       201 -~~~-~-----------~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~--~i~~d~vi~a~G~~p~~~  265 (433)
                       ..+ .           .+.+.+...+++++|+++.+...  +..   .....+...++.  .+.++.+++++|.+|...
T Consensus        85 ~~~d~~~~~~~~~~~i~~l~~g~~~~l~~~~V~vi~G~~~--~~~---~~~~~v~~~~~~~~~i~a~~ivi~~G~~p~~~  159 (235)
T d1h6va1          85 VKHDWEKMTESVQNHIGSLNWGYRVALREKKVVYENAYGK--FIG---PHKIMATNNKGKEKVYSAERFLIATGERPRYL  159 (235)
T ss_dssp             CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEECCEEE--EEE---TTEEEEECTTSCEEEEEEEEEEECCCEEECCC
T ss_pred             eeechhhhhheeeeeeeeccchhhhhhhccCceEEEeEEe--ecc---ccceecccccccccccccccceeecCCCceeE
Confidence             001 0           12233455677889999877532  222   223455555553  588999999999988643


Q ss_pred             hh-----------hccccc--CCCcEEeCCCCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccC
Q 013952          266 LF-----------KGQVAE--NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE  332 (433)
Q Consensus       266 ~~-----------~~~~~~--~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~  332 (433)
                      ..           ..++.+  ..|+|.||++||||+|+|||+|||+..+.         .++..|..+|+.||++|++..
T Consensus       160 ~i~~~~~~~~~l~~~gv~l~~~~g~I~vd~~~~TsvpgIyA~GDv~~g~~---------~l~~~A~~eG~~aa~~~~g~~  230 (235)
T d1h6va1         160 GIRDSCTRTIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEGKL---------ELTPVAIQAGRLLAQRLYGGS  230 (235)
T ss_dssp             SSEEESCTTSCCTTTTCCCCSSSCCBCCCTTSBCSSTTEEECGGGBTTSC---------CCHHHHHHHHHHHHHHHHHCC
T ss_pred             EEeeccceeeccccceeeeccccCccccCCccccCCCCEEEEEeccCCCc---------ccHHHHHHHHHHHHHHHcCCC
Confidence            21           234555  35889999999999999999999987543         456679999999999999764

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.68  E-value=3e-16  Score=120.13  Aligned_cols=96  Identities=21%  Similarity=0.428  Sum_probs=86.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCC---CeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCc
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINN---IDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGE  237 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g---~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~  237 (433)
                      .|++++|||+|++|+|+|..|.+++   .+||++++.+++++. +|+++++.+.+.++++||++++++++++++..+++.
T Consensus        19 ~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL~~-~d~~~~~~l~~~l~~~GV~v~~~~~v~~ie~~~~~~   97 (117)
T d1aoga2          19 PPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRG-FDHTLREELTKQLTANGIQILTKENPAKVELNADGS   97 (117)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSSTT-SCHHHHHHHHHHHHHTTCEEEESCCEEEEEECTTSC
T ss_pred             cCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhhcc-cchHHHHHHHHHHHhcCcEEEcCCEEEEEEEcCCCe
Confidence            5799999999999999998877665   579999999999986 799999999999999999999999999998755555


Q ss_pred             EEEEEeCCCcEEECCEEEEcc
Q 013952          238 VKEVKLKDGRTLEADIVVVGV  258 (433)
Q Consensus       238 ~~~v~~~~g~~i~~d~vi~a~  258 (433)
                      . .+.+++|++++||.|++|+
T Consensus        98 ~-~v~~~~G~~i~~D~Vi~AI  117 (117)
T d1aoga2          98 K-SVTFESGKKMDFDLVMMAI  117 (117)
T ss_dssp             E-EEEETTSCEEEESEEEECS
T ss_pred             E-EEEECCCcEEEeCEEEEeC
Confidence            4 6899999999999999985

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.68  E-value=4.3e-17  Score=142.37  Aligned_cols=76  Identities=25%  Similarity=0.424  Sum_probs=59.6

Q ss_pred             EEECCEEEEcccCcc--------Chhhh---hcccccCCCcEEeCCCCCCCCCCeEEcCccccccccccCcccccccHHH
Q 013952          248 TLEADIVVVGVGGRP--------LISLF---KGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDH  316 (433)
Q Consensus       248 ~i~~d~vi~a~G~~p--------~~~~~---~~~~~~~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~  316 (433)
                      .++++.++++++.+|        ++..+   ..++..++|+|.||++|||+.|+|||+|||.+.+          .+...
T Consensus       149 ~~~a~~v~i~~~~~~~~~~~~~~~~~~l~~~~~gv~~~~G~I~vde~~~T~~~~iyAvGDv~~~~----------~l~~~  218 (238)
T d1aoga1         149 RLETEHILLASGSWPHMPNGRSPRTKDLQLQNAGVMIKNGGVQVDEYSRTNVSNIYAIGDVTNRV----------MLTPV  218 (238)
T ss_dssp             EEEBSCEEECCCEEECCCCCEEECCGGGCGGGTTCCEETTEECCCTTCBCSSTTEEECGGGGTSC----------CCHHH
T ss_pred             cccccceeeecccccccccccccceeeecccccEEEEcCCeEEecCCeeeccCCEEEEEEecCCc----------cchhh
Confidence            567777777665444        44333   3456668899999999999999999999999876          34667


Q ss_pred             HHHHHHHHHHHHhccCC
Q 013952          317 ARKSAEQAVKTIMATEG  333 (433)
Q Consensus       317 A~~~g~~aa~~i~~~~~  333 (433)
                      |..+|+.||++|++..+
T Consensus       219 A~~eg~~aa~~i~g~~~  235 (238)
T d1aoga1         219 AINEAAALVDTVFGTTP  235 (238)
T ss_dssp             HHHHHHHHHHHHHSSSC
T ss_pred             HHHHHHHHHHHHcCCCC
Confidence            89999999999998653

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=7.4e-16  Score=119.32  Aligned_cols=98  Identities=19%  Similarity=0.309  Sum_probs=84.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEE
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE  240 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~  240 (433)
                      .+++++|||+|++|+|+|..|+++|.+||++++.+++++. +|+++++.+.+.++++||++++++++++++.++++....
T Consensus        21 ~pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l~~-~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~g~~v~   99 (125)
T d3grsa2          21 LPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRS-FDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVS   99 (125)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-SCHHHHHHHHHHHHHTTCEEETTEEEEEEEEETTEEEEE
T ss_pred             cCCEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccccc-hhhHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEE
Confidence            4799999999999999999999999999999999999986 899999999999999999999999999998855553322


Q ss_pred             EE-eCCC------cEEECCEEEEccc
Q 013952          241 VK-LKDG------RTLEADIVVVGVG  259 (433)
Q Consensus       241 v~-~~~g------~~i~~d~vi~a~G  259 (433)
                      +. ...|      ..+++|.|++|+|
T Consensus       100 ~~~~~~g~~~~~~~~~~~D~vl~a~G  125 (125)
T d3grsa2         100 MVTAVPGRLPVMTMIPDVDCLLWAIG  125 (125)
T ss_dssp             EEECCTTSCCEEEEEEEESEEEECSC
T ss_pred             EEEccCCcCcCccccccCCEEEEEeC
Confidence            22 2333      2578999999998

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.66  E-value=1.2e-15  Score=131.37  Aligned_cols=153  Identities=18%  Similarity=0.257  Sum_probs=109.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc---------------------------c-------CC--C-CCCH
Q 013952          162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW---------------------------C-------MP--R-LFTA  204 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~---------------------------~-------~~--~-~~~~  204 (433)
                      ...++|||+|+.|+++|..+++.|.+|+++++...                           +       ..  . ..+.
T Consensus         5 ~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~~~GG~c~~~gc~p~k~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~   84 (220)
T d1lvla1           5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASPRLDI   84 (220)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCCCCH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcccccccccchhhhhhHHHHhhhhhccccccceEEeccceehH
Confidence            35799999999999999999999999999986420                           0       00  0 0000


Q ss_pred             ------------HHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhh------
Q 013952          205 ------------DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISL------  266 (433)
Q Consensus       205 ------------~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~------  266 (433)
                                  .........+++.+++++.+...  +..  ..   .+. .++..+.+|.+++|+|.+|....      
T Consensus        85 ~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~~~--~~~--~~---~~~-~~~~~i~a~~viiAtG~~p~~lp~~~~~~  156 (220)
T d1lvla1          85 GQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAK--VLD--GK---QVE-VDGQRIQCEHLLLATGSSSVELPRRPRTK  156 (220)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEE--EEE--TT---EEE-ETTEEEECSEEEECCCEEECCBTEEECCS
T ss_pred             HHHhhhheeEEeeeccchhhhhccCceEEEEeeec--ccC--cc---ccc-ccceeEeeceeeEcCCCCccccccccccc
Confidence                        11223344567778888766421  211  11   122 24568999999999998886521      


Q ss_pred             ----hhcccccCCCcEEeCCCCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccC
Q 013952          267 ----FKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE  332 (433)
Q Consensus       267 ----~~~~~~~~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~  332 (433)
                          ....+.+++++|.||++|||+.|+|||+|||++.+          .++..|..+|+.||++|+++.
T Consensus       157 ~~~~~~~~~~~~~g~i~vd~~~~T~~~~I~A~GDv~~~~----------~l~~~a~~~g~~~a~~i~G~~  216 (220)
T d1lvla1         157 GFNLECLDLKMNGAAIAIDERCQTSMHNVWAIGDVAGEP----------MLAHRAMAQGEMVAEIIAGKA  216 (220)
T ss_dssp             SSSGGGSCCCEETTEECCCTTCBCSSTTEEECGGGGCSS----------CCHHHHHHHHHHHHHHHTTCC
T ss_pred             CCcceeeehhhcCCcccccchhhcCCCCEEEEEEeCCcc----------cchhhhhhhHHHHHHHHcCCC
Confidence                12234447899999999999999999999999876          356778899999999998864

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.61  E-value=1.9e-15  Score=130.89  Aligned_cols=158  Identities=20%  Similarity=0.240  Sum_probs=102.6

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC-----------------------------------CCCCH----
Q 013952          164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP-----------------------------------RLFTA----  204 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~-----------------------------------~~~~~----  204 (433)
                      .++|||+|+.|+.+|..+++.|.+|+++++.+.+-.                                   ..+..    
T Consensus         8 DviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~GG~~~~~g~~~~~~~~~~a~~~~~~~~~~~~G~~~~~~~~~~~~~~   87 (229)
T d1ojta1           8 DVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKYPEPELDIDMLR   87 (229)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCCHHHHH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeeccccchhhhhhhhhhhHHhhhhHhhcCCcccCCcccHHHHH
Confidence            589999999999999999999999999987653210                                   00111    


Q ss_pred             --------HHHHHHHHHHHhcCcEEEcCCeEEEEE--------ecCCCcEEEEEeCCCcEEECCEEEEccc-CccChhhh
Q 013952          205 --------DIAAFYEGYYANKGIKIIKGTVAVGFT--------TNADGEVKEVKLKDGRTLEADIVVVGVG-GRPLISLF  267 (433)
Q Consensus       205 --------~~~~~l~~~l~~~GV~v~~~~~v~~i~--------~~~~g~~~~v~~~~g~~i~~d~vi~a~G-~~p~~~~~  267 (433)
                              .+...+........++++.+.....-.        ...... ........+...++.++++.| +.|+....
T Consensus        88 ~~~~~~~~~l~~~~~~~~~~~~v~vi~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  166 (229)
T d1ojta1          88 AYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFLDPHHLEVSLTAGDAYE-QAAPTGEKKIVAFKNCIIAAGSRAPNGKLI  166 (229)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTEEEEEEEEEEETT-EEEEEEEEEEEEEEEEEECCCEEEECGGGT
T ss_pred             HHHHHHHHHHhcchHhHhhcCceEEEEeeeeecCCcccccccccccccc-cccccccccceecceEEEEecccCCccccc
Confidence                    122233445566777776543211100        000000 001111113455666666666 55655432


Q ss_pred             ---hccccc-CCCcEEeCCCCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccC
Q 013952          268 ---KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE  332 (433)
Q Consensus       268 ---~~~~~~-~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~  332 (433)
                         ..++.+ ++|+|.||++||||+|+|||+|||++.+          .++..|..+|++||.+|++..
T Consensus       167 ~~e~~g~~~d~~G~I~vd~~~~TsvpgVyAaGDv~~~~----------~l~~~A~~eG~~Aa~~i~G~~  225 (229)
T d1ojta1         167 SAEKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQP----------MLAHKAVHEGHVAAENCAGHK  225 (229)
T ss_dssp             TGGGTTCCCCTTSCCCCCTTSBCSSTTEEECGGGTCSS----------CCHHHHHHHHHHHHHHHTTCC
T ss_pred             chhhhCccCCCCCCEEcCCCccCCCCCEEEEEecCCCc----------chHHHHHHHHHHHHHHHcCCC
Confidence               346666 6789999999999999999999999876          356678899999999999864

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.60  E-value=6.4e-15  Score=113.18  Aligned_cols=97  Identities=27%  Similarity=0.337  Sum_probs=80.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCC--cE
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG--EV  238 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g--~~  238 (433)
                      .|++++|||+|++|+|+|..|+++|.+|+++.+. .+++. +|+++++.+.+.++++||++++++.|++++..+++  ..
T Consensus        19 ~P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~-~~l~~-~D~~~~~~l~~~l~~~Gv~i~~~~~v~~~~~~~~~~~~~   96 (122)
T d1h6va2          19 CPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILLRG-FDQDMANKIGEHMEEHGIKFIRQFVPTKIEQIEAGTPGR   96 (122)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-SSSTT-SCHHHHHHHHHHHHHTTEEEEESCEEEEEEEEECSTTCE
T ss_pred             CCCeEEEECCCccHHHHHHHHhhcCCeEEEEEec-hhhcc-CCHHHHHHHHHHHHHCCCEEEECCEEEEEEEecCCCccE
Confidence            5899999999999999999999999999999864 67775 89999999999999999999999999999764333  22


Q ss_pred             EEEEeCCC-----cEEECCEEEEccc
Q 013952          239 KEVKLKDG-----RTLEADIVVVGVG  259 (433)
Q Consensus       239 ~~v~~~~g-----~~i~~d~vi~a~G  259 (433)
                      ..+...++     ..+++|.|++|+|
T Consensus        97 ~~v~~~~~~~~~~~~~~~D~vl~AiG  122 (122)
T d1h6va2          97 LKVTAKSTNSEETIEDEFNTVLLAVG  122 (122)
T ss_dssp             EEEEEECTTSCEEEEEEESEEECCCC
T ss_pred             EEEEEEECCCCcEEEEECCEEEEEeC
Confidence            34443322     2467999999998

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.60  E-value=3.3e-15  Score=129.29  Aligned_cols=154  Identities=20%  Similarity=0.287  Sum_probs=109.5

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCC-C----------------------------------------
Q 013952          164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL-F----------------------------------------  202 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~-~----------------------------------------  202 (433)
                      .++|||+|+.|+.+|..+++.|.+|.++++........ +                                        
T Consensus         5 DviIIGgGpAGl~aA~~aar~G~~V~viE~~~~~~~~~~~gg~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~   84 (229)
T d3lada1           5 DVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGISTGEVA   84 (229)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTEECSCCE
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEecccCCCccccccccccccccchhhhhhhhhhhhhhhhhhhhhcccccCcce
Confidence            58999999999999999999999999998642110000 0                                        


Q ss_pred             -C------------HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCC--cEEECCEEEEcccCccChh--
Q 013952          203 -T------------ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG--RTLEADIVVVGVGGRPLIS--  265 (433)
Q Consensus       203 -~------------~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g--~~i~~d~vi~a~G~~p~~~--  265 (433)
                       +            ..+...+...++..||+++.+.....     +..........+  ..+.++.+++++|.+|...  
T Consensus        85 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~gV~vi~G~~~~~-----~~~~~~~~~~~~~~~~~~~~~~i~atG~~~~~~~~  159 (229)
T d3lada1          85 IDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLL-----AGKKVEVTAADGSSQVLDTENVILASGSKPVEIPR  159 (229)
T ss_dssp             ECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEEEC-----STTCEEEECTTSCEEEECCSCEEECCCEEECCCTE
T ss_pred             eecchhhhhhhHHHHHhhhhHHHHhhcCCeEEEEeEEccc-----ccceeeccccCccceeeecccccccCCcccccccc
Confidence             0            01223445566788999886643221     111123333332  4688999999999877543  


Q ss_pred             -------hh-hccccc-CCCcEEeCCCCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccC
Q 013952          266 -------LF-KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE  332 (433)
Q Consensus       266 -------~~-~~~~~~-~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~  332 (433)
                             ++ ..++.+ ++|+|.||++|||+.|+|||+|||+..+          .+...|..+|+.||++|+++.
T Consensus       160 ~~~~~~~~~~~~gv~l~~~G~i~vd~~~~T~vpgiyA~GDv~~g~----------~l~~~A~~~G~~aa~~i~g~~  225 (229)
T d3lada1         160 RPVTTDLLAADSGVTLDERGFIYVDDYCATSVPGVYAIGDVVRGA----------MLAHKASEEGVVVAERIAGHK  225 (229)
T ss_dssp             EECCTTCCSSCCSCCBCTTSCBCCCTTSBCSSTTEEECGGGSSSC----------CCHHHHHHHHHHHHHHHHHCC
T ss_pred             cccccccchHhcCeeecCCCcEEecccccCCCCCEEEEeCCcchH----------HHHHHHHHHHHHHHHHHcCCC
Confidence                   11 345666 6789999999999999999999998876          346678899999999999764

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.60  E-value=2.4e-14  Score=125.85  Aligned_cols=124  Identities=17%  Similarity=0.194  Sum_probs=83.3

Q ss_pred             CCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCc-EEEEEeCCCcEEECCEEEEcccCccChhh---------hh-cc
Q 013952          202 FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGE-VKEVKLKDGRTLEADIVVVGVGGRPLISL---------FK-GQ  270 (433)
Q Consensus       202 ~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~-~~~v~~~~g~~i~~d~vi~a~G~~p~~~~---------~~-~~  270 (433)
                      -..++.+.+.+.+++.||+++++++|+++...+++. +..+...++.++.||.||+|+|-.+...+         ++ .+
T Consensus       107 ~a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~a~~VIiAtGG~S~p~~G~~g~g~~~a~~~~  186 (253)
T d2gqfa1         107 GAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVATGGLSMPGLGATPFGYQIAEQFG  186 (253)
T ss_dssp             CTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTEEEEESEEEECCCCSSCGGGTCCSHHHHHHHHTT
T ss_pred             chhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEecCCEEEEeCEEEEcCCcccccccCCCchHHHHHHhcc
Confidence            357788899999999999999999999998755543 23344556778999999999996543322         11 11


Q ss_pred             ccc------CCCcEE---eCC-CCCC-CCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhc
Q 013952          271 VAE------NKGGIE---TDD-FFKT-SADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMA  330 (433)
Q Consensus       271 ~~~------~~g~i~---vd~-~~~t-~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~  330 (433)
                      +..      ..|++.   +|+ .|++ ..|++|.+|.+.......-|     -..+.|...|..|++.|..
T Consensus       187 ~~i~~~~~~~~ggv~~~~i~~~t~es~~~~gl~~~ge~ldv~g~~gg-----~n~~~a~~s~~~~~~~~~~  252 (253)
T d2gqfa1         187 IPVIPPRAVTMGGVDTKVISSKTMESNQVSGLYFIGEVLDVTGWLGG-----YNFQWAWSSAYACALSISR  252 (253)
T ss_dssp             CCEEEEEEEEEEEECGGGBCTTTCBBSSSTTEEECGGGBSCEECTTT-----HHHHHHHHHHHHHHHHHHT
T ss_pred             ccccccccccCCCCcccccCccchhhhcCCCcEEeeeEEEeeeecCC-----EehhhhHhHHHHHHHHHhc
Confidence            111      234443   343 4776 68999999987765332112     2345567788888888764

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=99.58  E-value=4.1e-19  Score=154.71  Aligned_cols=169  Identities=12%  Similarity=0.110  Sum_probs=94.4

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHh
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   83 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (433)
                      ..++|+|||||||||+||.+|+++|++   |+|+|++...      .+.+.........+.+...     .......+.+
T Consensus        48 ~~k~VvIIGaGpAGl~aA~~l~~~G~~---v~l~E~~~~~------GG~~~~~~~~~~~~~~~~~-----~~~~~~~~~~  113 (233)
T d1djqa3          48 NKDSVLIVGAGPSGSEAARVLMESGYT---VHLTDTAEKI------GGHLNQVAALPGLGEWSYH-----RDYRETQITK  113 (233)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSST------TTTHHHHTTSTTCGGGGHH-----HHHHHHHHHH
T ss_pred             CCceEEEEcccHHHHHHHHHHHHhccc---eeeEeecccc------CCccccccccceeeccccc-----chhHHHHHHH
Confidence            458999999999999999999999987   9999998211      1111111111111100000     0001111111


Q ss_pred             CCcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCC
Q 013952           84 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNG  163 (433)
Q Consensus        84 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~  163 (433)
                      .......    ..++...+.+...+..++.||++|+|||+.+..+..   ++......+...+......     .....+
T Consensus       114 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~~---~~~~~~~~~~~~~~~~~~~-----~~~~~~  181 (233)
T d1djqa3         114 LLKKNKE----SQLALGQKPMTADDVLQYGADKVIIATGASECTLWN---ELKARESEWAENDIKGIYL-----IGDAEA  181 (233)
T ss_dssp             HHTTCTT----CEEECSCCCCCHHHHHTSCCSEEEECCCEECCHHHH---HHHHTTHHHHHTTCCEEEE-----CGGGTS
T ss_pred             Hhhccee----eeeecccccccchhhhhhccceeeeccCCCcccccc---cccccccccchhhhhhhhh-----ccccCC
Confidence            1111100    112222333333333467899999999998765542   2111111100000000000     001468


Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC
Q 013952          164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM  198 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~  198 (433)
                      +++|+|+|++|+|+|..|++.|.+|+++.+.+.+.
T Consensus       182 ~vvViGgG~~g~e~A~~l~~~g~~Vtli~r~~~~~  216 (233)
T d1djqa3         182 PRLIADATFTGHRVAREIEEANPQIAIPYKRETIA  216 (233)
T ss_dssp             CCCHHHHHHHHHHHHHTTTSSCTTSCCCCCCCCCC
T ss_pred             ceeEecCchHHHHHHHHHHhcCCceEEEEeccccc
Confidence            99999999999999999999999999999887654

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.55  E-value=4.5e-14  Score=123.90  Aligned_cols=122  Identities=20%  Similarity=0.236  Sum_probs=83.8

Q ss_pred             CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChh---------hhh-cccc
Q 013952          203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS---------LFK-GQVA  272 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~---------~~~-~~~~  272 (433)
                      ..++.+.+.+.+++.||+++++++|+++.. +++.+..+.+++++.+.||.||+|+|......         ++. .+..
T Consensus       109 ~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~-~~~~~~~v~~~~g~~i~a~~vI~AtGg~S~p~~Gs~g~g~~~a~~~~~~  187 (251)
T d2i0za1         109 AQSVVDALLTRLKDLGVKIRTNTPVETIEY-ENGQTKAVILQTGEVLETNHVVIAVGGKSVPQTGSTGDGYAWAEKAGHT  187 (251)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEE-ETTEEEEEEETTCCEEECSCEEECCCCSSSGGGSCSSHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHcCCcccCCcEEEEEEE-ECCEEEEEEeCCCCeEecCeEEEccCCccccccCCCcccchhcccceee
Confidence            356788889999999999999999999987 46777789999999999999999999543222         221 1222


Q ss_pred             cC---CCcEEeC----CCC-CCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhc
Q 013952          273 EN---KGGIETD----DFF-KTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMA  330 (433)
Q Consensus       273 ~~---~g~i~vd----~~~-~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~  330 (433)
                      ..   ...+.++    ..+ .+..|++|++|++........|     .....|...|+.++..+..
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~l~~~~~~gG-----~~~~~a~~~G~~a~~~~~~  248 (251)
T d2i0za1         188 ITELFGGGVSVKEINPKEMSSKFTNGLYFCGEVLDIHGYTGG-----YNITSALVTGRIAGTTAGE  248 (251)
T ss_dssp             EEEEEEEEECGGGEETTTTEESSSBTEEECGGGBSCBCCTTT-----HHHHHHHHHHHHHHHHHHH
T ss_pred             eeeeeecccCccccCchhHHHhcCCCcEeeeeEEEccCCcch-----HHHHHHHHHHHHHHHHHHH
Confidence            11   1111111    122 3478999999998865433222     2345677788888887643

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=99.55  E-value=9e-17  Score=131.66  Aligned_cols=122  Identities=16%  Similarity=0.255  Sum_probs=82.2

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHh
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   83 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (433)
                      +.++|+|||||||||+||..|+++|++   |+|+|+..      .+.+.+....   .+|+....  ....+.+...+++
T Consensus        42 ~~k~V~IIGaGPAGL~AA~~la~~G~~---Vtl~E~~~------~~GG~l~~~~---~~p~~~~~--~~~~~~~~~~~~~  107 (179)
T d1ps9a3          42 QKKNLAVVGAGPAGLAFAINAAARGHQ---VTLFDAHS------EIGGQFNIAK---QIPGKEEF--YETLRYYRRMIEV  107 (179)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCE---EEEEESSS------SSCTTHHHHT---TSTTCTTH--HHHHHHHHHHHHH
T ss_pred             CCcEEEEECccHHHHHHHHHHHhhccc---eEEEeccC------ccCceEEEEE---eCcccchH--HHHHHHHHHhhhc
Confidence            468999999999999999999999998   99999982      1222121111   11111100  0012345566677


Q ss_pred             CCcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCC
Q 013952           84 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNG  163 (433)
Q Consensus        84 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~  163 (433)
                      .++++++++.|+.           + ....||.+|+|||+.|+.++   +|+.+                       .++
T Consensus       108 ~gV~i~l~~~Vt~-----------~-~~~~~d~vilAtG~~~~~~~---~pg~~-----------------------~g~  149 (179)
T d1ps9a3         108 TGVTLKLNHTVTA-----------D-QLQAFDETILASGIPNRALA---QPLID-----------------------SGK  149 (179)
T ss_dssp             HTCEEEESCCCCS-----------S-SSCCSSEEEECCCEECCTTH---HHHHT-----------------------TTC
T ss_pred             CCeEEEeCCEEcc-----------c-ccccceeEEEeecCCCcccc---cchhc-----------------------cCC
Confidence            8999999876632           1 13579999999999876554   23321                       478


Q ss_pred             cEEEECCCHHHHHH
Q 013952          164 KAVVVGGGYIGLEL  177 (433)
Q Consensus       164 ~v~ViG~G~~g~e~  177 (433)
                      +++|+|+|.+++++
T Consensus       150 ~v~vigggd~a~~~  163 (179)
T d1ps9a3         150 TVHLIGGCDVAMEL  163 (179)
T ss_dssp             CEEECGGGTCCSSC
T ss_pred             EEEEECCcHhhhhc
Confidence            99999999888775

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.52  E-value=3.8e-19  Score=157.65  Aligned_cols=153  Identities=16%  Similarity=0.163  Sum_probs=78.5

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-C---CCCCCCCccccccCCCCC----CCCC--CcccccCC----
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-V---APYERPALSKAYLFPEGT----ARLP--GFHVCVGS----   71 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~---~~~~~~~~~~~~~~~~~~----~~~~--~~~~~~~~----   71 (433)
                      ||++||||||||++||.++++.|++   |+|||+. .   +.+..|.+++.++.....    .+..  ++......    
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~G~~---V~liE~~~~GGtc~n~gciPsK~l~~~~~~~~~~~~~~~~G~~~~~~~~~~~   78 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARHNAK---VALVEKSRLGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTKFSFNLPL   78 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCC---EEEEESSSTTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCCCCeEEeeCCcchHHHHhhhhcccchhccccccccchhhhhhhh
Confidence            8999999999999999999999998   9999998 2   223333344433321100    0000  00000000    


Q ss_pred             ----------CCCCCCHhHHHhCCcEEEeCceEEEEECCCCEEEe-------------CCCcEEecceEEEccCCCccc-
Q 013952           72 ----------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLS-------------ATGLIFKYQILVIATGSTVLR-  127 (433)
Q Consensus        72 ----------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~-------------~~~~~~~~d~lvlAtG~~~~~-  127 (433)
                                .........+++.+++++.+...+ +  +.+++..             .+++++++|+++||||++|.. 
T Consensus        79 ~~~~~~~~i~~~~~~~~~~l~~~gV~vi~G~a~f-~--~~~~v~v~~~~~~~~~~~~~~~~~~i~a~~iiIATGs~P~~~  155 (259)
T d1onfa1          79 LVERRDKYIQRLNNIYRQNLSKDKVDLYEGTASF-L--SENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVGR  155 (259)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCCC-C----------------------------CBSSEEECCCCCBCCB
T ss_pred             HHhhhheeeeccccchhhhcccccceEEeeeccc-c--cccccccccceeccccccCccceEEEeeeeEEEecCCCCccc
Confidence                      000112334567899999875322 1  1112111             234579999999999999842 


Q ss_pred             -cCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHH
Q 013952          128 -LTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIG  174 (433)
Q Consensus       128 -~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g  174 (433)
                       ++.+ ..+.+..++++.+......         ...+..|+|+|.+|
T Consensus       156 ~~~~~-~~~l~~~~i~ts~~~~~~d---------~~~~t~Vig~gaiG  193 (259)
T d1onfa1         156 SPDTE-NLKLEKLNVETNNNYIVVD---------ENQRTSVNNIYAVG  193 (259)
T ss_dssp             CCTTT-TSSCTTTTCCBSSSCEEEC---------TTCBCSSSSEEECS
T ss_pred             ccccc-ccccccceeeecccccccc---------cCCceeEeeEEEEE
Confidence             2211 1233334444443322211         13355677777665

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.52  E-value=2.3e-13  Score=113.27  Aligned_cols=159  Identities=18%  Similarity=0.246  Sum_probs=118.9

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc--c-----------CCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEE
Q 013952          164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPW--C-----------MPRLFTADIAAFYEGYYANKGIKIIKGTVAVGF  230 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~--~-----------~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i  230 (433)
                      .|+|||+|++|+++|..+++.|.+|+++++...  .           .+....+.+...++...++.+++......+..+
T Consensus         3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKL   82 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCEEEE
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCeEEEEEEecCCcccccccceeccccchhhhHHHHHHHHHHhhheeceeeccceeeee
Confidence            489999999999999999999999999986421  1           011123677777888888999999998888888


Q ss_pred             EecCCC-cEEEEEeCCCcEEECCEEEEcccCccChh-hhhccccc-CCCcEEeCCCCCCCCCCeEEcCccccccccccCc
Q 013952          231 TTNADG-EVKEVKLKDGRTLEADIVVVGVGGRPLIS-LFKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYRE  307 (433)
Q Consensus       231 ~~~~~g-~~~~v~~~~g~~i~~d~vi~a~G~~p~~~-~~~~~~~~-~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~  307 (433)
                      ...... ........++..+.++.++.++|..++.. .....+.. ..|.+.+|+.++|+.|+||++|||...+.     
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~i~v~~~~~t~~~gv~a~gd~~~~~~-----  157 (184)
T d1fl2a1          83 IPAAVEGGLHQIETASGAVLKARSIIVATGAKLPNTNWLEGAVERNRMGEIIIDAKCETNVKGVFAAGDCTTVPY-----  157 (184)
T ss_dssp             ECCSSTTCCEEEEETTSCEEEEEEEEECCCEEEESCGGGTTTSCBCTTSCBCCCTTCBCSSTTEEECSTTBSCSS-----
T ss_pred             cccccccceeeeeeecceeeecccccccccccccccccccccccccccceeccCCceeeeCCCEEEEeeecCccc-----
Confidence            653322 23344556667899999999999655443 44444444 67889999999999999999999988654     


Q ss_pred             ccccccHHHHHHHHHHHHHHHhcc
Q 013952          308 MRRVEHVDHARKSAEQAVKTIMAT  331 (433)
Q Consensus       308 ~~~~~~~~~A~~~g~~aa~~i~~~  331 (433)
                          +....|..+|..+|.++...
T Consensus       158 ----~~~vva~g~G~~aA~~~~~~  177 (184)
T d1fl2a1         158 ----KQIIIATGEGAKASLSAFDY  177 (184)
T ss_dssp             ----CCHHHHHHHHHHHHHHHHHH
T ss_pred             ----CCcEEEEECcHHHHHHHHHH
Confidence                34556777888887776543

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.50  E-value=1.2e-13  Score=119.58  Aligned_cols=154  Identities=22%  Similarity=0.276  Sum_probs=103.4

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCC-----CC-------H---------------------------
Q 013952          164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL-----FT-------A---------------------------  204 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~-----~~-------~---------------------------  204 (433)
                      .|+|||+|+.|+.+|..+++.|.+|.+++..+.+....     .+       .                           
T Consensus         7 DviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~~~~   86 (233)
T d1v59a1           7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGDIKINVAN   86 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEECSCEEECHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCcceEeEEeeccccccccccchhHHHhhhhHhhcCeeEeeceecchhh
Confidence            58999999999999999999999999998765431000     00       0                           


Q ss_pred             ----------HHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCC--------cEEECCEEEE--------cc
Q 013952          205 ----------DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG--------RTLEADIVVV--------GV  258 (433)
Q Consensus       205 ----------~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g--------~~i~~d~vi~--------a~  258 (433)
                                .+........++.+|+++.+.-  ++.   +.....+....+        ..++++.+++        ++
T Consensus        87 ~~~~~~~~i~~~~~~~~~l~~~~~v~~~~G~a--~f~---~~~~~~v~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~  161 (233)
T d1v59a1          87 FQKAKDDAVKQLTGGIELLFKKNKVTYYKGNG--SFE---DETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPFV  161 (233)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCEEEESEE--EES---SSSEEEEECCTTCTTCCSSCEEEEEEEEEECCCEEECCCS
T ss_pred             hhheeeeEEEEeecceeeeeccCCeEEEEEEE--EEe---cCCCcEEEecccccceeeeeeeccCCeEEEecccccceec
Confidence                      1112223344555676655421  111   111122222221        2344444444        89


Q ss_pred             cCccChhhh---hccccc-CCCcEEeCCCCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccC
Q 013952          259 GGRPLISLF---KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE  332 (433)
Q Consensus       259 G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~  332 (433)
                      |++|+++.+   +.++++ +.|+|.||++++|+.|+|||+|||+..+          .+...|..+|+.||++|++..
T Consensus       162 G~~p~~~~l~l~~~gv~~~~~g~i~vd~~~~T~~~~v~A~GD~~~g~----------~l~~~a~~~G~~aa~~i~~~~  229 (233)
T d1v59a1         162 GRRPYIAGLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVGDVTFGP----------MLAHKAEEEGIAAVEMLKTGH  229 (233)
T ss_dssp             CEEECCTTSCTTTTTCCBCTTSCBCCCTTSBCSSTTEEECGGGSSSC----------CCHHHHHHHHHHHHHHHHHSC
T ss_pred             ccccCCCCcCchhcCeEEcCCCcEEECCeEecCCCCEEEEcCCcccH----------HHHHHHHHHHHHHHHHHccCC
Confidence            999998754   335666 6788999999999999999999999877          346678899999999998764

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=4.9e-17  Score=139.94  Aligned_cols=176  Identities=16%  Similarity=0.142  Sum_probs=100.4

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-C---CCCCCCCccccccCCCCC-------CCCCCcccccCC-
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-V---APYERPALSKAYLFPEGT-------ARLPGFHVCVGS-   71 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~---~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~-   71 (433)
                      ++|||+||||||||++||.+|++.|++   |+|||++ .   +.+..|..++.+......       ....++...... 
T Consensus         1 k~yDvvVIG~G~aG~~aA~~a~~~G~k---V~iiE~~~~GGtc~~~gc~p~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~   77 (217)
T d1gesa1           1 KHYDYIAIGGGSGGIASINRAAMYGQK---CALIEAKELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKF   77 (217)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTCC---EEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEE
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCE---EEEEeccCcCCeEecccccccccchhhHHHHHHHHhhhhhcCccCCcccc
Confidence            479999999999999999999999988   9999997 2   112222222222111000       000000000000 


Q ss_pred             --------------CCCCCCHhHHHhCCcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCCCCCCC
Q 013952           72 --------------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGAD  137 (433)
Q Consensus        72 --------------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~  137 (433)
                                    .........+++.+|++.........   ...+ ..++..+.++++++|||+.|..|+.++.++..
T Consensus        78 ~~~~~~~~~~~~v~~~~~~~~~~l~~~gV~v~~~~~~~~~---~~~~-~~~~~~~~~~~~iiatG~~p~ip~ip~~~~l~  153 (217)
T d1gesa1          78 NWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVD---AKTL-EVNGETITADHILIATGGRPSHPREPANDNIN  153 (217)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEE---TTEE-EETTEEEEEEEEEECCCEEECCCEEESCTTSC
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccce---eeee-cCCCceeeeeeeeeecCccccCCCCCCcCCcc
Confidence                          00011233456778998877544331   2222 34667899999999999999888743222210


Q ss_pred             --CCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEE
Q 013952          138 --AKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVS  189 (433)
Q Consensus       138 --~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~  189 (433)
                        ..++.+...-  ...+ +......++++.++|+|.+|+|+|..+.+.|.+|+
T Consensus       154 l~~~gv~~~~~~--~i~~-d~~~~t~~~~i~~iG~g~~g~ela~~~~~~G~~v~  204 (217)
T d1gesa1         154 LEAAGVKTNEKG--YIVV-DKYQNTNIEGIYAVGDNTGAVELTPVAVAAGRRLS  204 (217)
T ss_dssp             HHHHTCCBCTTS--CBCC-CTTSBCSSTTEEECSGGGTSCCCHHHHHHHHHHHH
T ss_pred             cccccEEEcCCc--cEee-CchhccCCCcEEEECCCccHHHHHHHHHHHHHHHH
Confidence              0011110000  0000 00001135689999999999999999999888774

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=99.46  E-value=1.6e-14  Score=116.80  Aligned_cols=133  Identities=12%  Similarity=0.049  Sum_probs=94.4

Q ss_pred             EccCCCccccCCCCCCCCCCC--CEEEecCHHHHHHHHHHHHhcCCCcEEEE--CCCHHHHHHHHHHHhCCCeEEEEccC
Q 013952          119 IATGSTVLRLTDFGVEGADAK--NIFYLREIDDADKLVEAIKAKKNGKAVVV--GGGYIGLELSAALKINNIDVSMVYPE  194 (433)
Q Consensus       119 lAtG~~~~~~~~~~~~g~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~v~Vi--G~G~~g~e~a~~l~~~g~~V~li~~~  194 (433)
                      -|||+.|..|.+  +||.+..  +++   +.+++...    +...++.++|+  |+|++|+|+|..|++.|++||++++.
T Consensus         3 ~atG~~~~~~~p--ipG~~~~~~~v~---t~~d~l~~----~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~   73 (156)
T d1djqa2           3 NTDGTNCLTHDP--IPGADASLPDQL---TPEQVMDG----KKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGV   73 (156)
T ss_dssp             CSSCCCTTTSSC--CTTCCTTSTTEE---CHHHHHHT----CSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCCCCCCCCCC--CCCccCCCCEEE---CHHHHhcC----ccccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecC
Confidence            389999987733  6777654  455   33444322    22234555555  99999999999999999999999999


Q ss_pred             CccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh
Q 013952          195 PWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF  267 (433)
Q Consensus       195 ~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~  267 (433)
                      +.+++. ++......+.+.|++.||++++++.+.++..  ++    +.+.+.....++.++.++|..|+....
T Consensus        74 ~~~~~~-~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~--~~----v~l~~~~~~~~~~v~~~~g~~~~~~~~  139 (156)
T d1djqa2          74 HLANYM-HFTLEYPNMMRRLHELHVEELGDHFCSRIEP--GR----MEIYNIWGDGSKRTYRGPGVSPRDANT  139 (156)
T ss_dssp             CTTTHH-HHTTCHHHHHHHHHHTTCEEEETEEEEEEET--TE----EEEEETTCSCSCCCCCCTTSCSSCCCC
T ss_pred             Cccccc-cchhHHHHHHHHHhhccceEEeccEEEEecC--cc----eEEEeeeccccceeeeeeEEEecccCC
Confidence            888765 5777788899999999999999999999975  22    222222223455566666666665543

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.41  E-value=2.1e-12  Score=110.30  Aligned_cols=152  Identities=22%  Similarity=0.321  Sum_probs=109.6

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc---------------------------cCCC--------CCC-H---
Q 013952          164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPW---------------------------CMPR--------LFT-A---  204 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~---------------------------~~~~--------~~~-~---  204 (433)
                      .++|||+|+.|+++|..+++.|.+|.++++...                           ....        .++ +   
T Consensus         4 DvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~~GGtc~~~gc~p~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~~~   83 (217)
T d1gesa1           4 DYIAIGGGSGGIASINRAAMYGQKCALIEAKELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFNWETLI   83 (217)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEECHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEeccCcCCeEecccccccccchhhHHHHHHHHhhhhhcCccCCcccccHHHHH
Confidence            489999999999999999999999999987431                           0000        000 0   


Q ss_pred             --------HHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh---------
Q 013952          205 --------DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF---------  267 (433)
Q Consensus       205 --------~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~---------  267 (433)
                              .+...++..+++.||++..........    .   . ...++..+.++.+++|+|.+|.....         
T Consensus        84 ~~~~~~v~~~~~~~~~~l~~~gV~v~~~~~~~~~~----~---~-~~~~~~~~~~~~~iiatG~~p~ip~ip~~~~l~l~  155 (217)
T d1gesa1          84 ASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDA----K---T-LEVNGETITADHILIATGGRPSHPREPANDNINLE  155 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEET----T---E-EEETTEEEEEEEEEECCCEEECCCEEESCTTSCHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeEEEEeeeccccee----e---e-ecCCCceeeeeeeeeecCccccCCCCCCcCCcccc
Confidence                    122334556778899988775433221    1   1 22356789999999999977654311         


Q ss_pred             hccccc-CCCcEEeCCCCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCC
Q 013952          268 KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEG  333 (433)
Q Consensus       268 ~~~~~~-~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~  333 (433)
                      ..++.. +++++.+|+.++|+.|+||++||+....          +.+..+.++|+.++.++++..+
T Consensus       156 ~~gv~~~~~~~i~~d~~~~t~~~~i~~iG~g~~g~----------ela~~~~~~G~~v~~~~~~~~p  212 (217)
T d1gesa1         156 AAGVKTNEKGYIVVDKYQNTNIEGIYAVGDNTGAV----------ELTPVAVAAGRRLSERLFNNKP  212 (217)
T ss_dssp             HHTCCBCTTSCBCCCTTSBCSSTTEEECSGGGTSC----------CCHHHHHHHHHHHHHHHHTTCT
T ss_pred             cccEEEcCCccEeeCchhccCCCcEEEECCCccHH----------HHHHHHHHHHHHHHHHHhCCCC
Confidence            234555 6788999999999999999999999876          4567788999999999987653

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.39  E-value=8.2e-12  Score=113.41  Aligned_cols=124  Identities=19%  Similarity=0.159  Sum_probs=78.5

Q ss_pred             CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCC--C--cEEECCEEEEccc-CccChhhhh---------
Q 013952          203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD--G--RTLEADIVVVGVG-GRPLISLFK---------  268 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~--g--~~i~~d~vi~a~G-~~p~~~~~~---------  268 (433)
                      ...+.+.+.+.+.+.|+++++++++.++..+++|++..|...+  +  ..+.++.||+|+| +..|.++..         
T Consensus       151 ~~~~~~~l~~~a~~~gv~i~~~t~v~~li~d~~G~V~Gv~~~~~~~~~~~i~Ak~VIlAtGG~~~n~~~~~~~~~~~~~~  230 (322)
T d1d4ca2         151 GAHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAKNNERVSKYDPKLKGF  230 (322)
T ss_dssp             HHHHHHHHHHHHHHTTCEEETTEEEEEEECCSSSCCCEEEEEETTTEEEEEECSEEEECCCCCTTCHHHHHHHCGGGTTC
T ss_pred             hHHHHHHHHHHHHhcCceEEEeeecccccccccccccceEEEeecccEEEEeCCeEEEcCCCcccCHHHHHhhCcccccc
Confidence            4577888888889999999999999999876778887776542  3  2589999999999 332332210         


Q ss_pred             ------------------ccc---ccCCCcEEe-------CCCCCCCCCCeEEcCccccccccccCcccc-cccHHHHHH
Q 013952          269 ------------------GQV---AENKGGIET-------DDFFKTSADDVYAVGDVATFPMKLYREMRR-VEHVDHARK  319 (433)
Q Consensus       269 ------------------~~~---~~~~g~i~v-------d~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~-~~~~~~A~~  319 (433)
                                        .+.   .++.+++.+       ++..+|.+|++||+|+|+...+   |..+. -..+..+.-
T Consensus       231 ~~~~~~~~tGdg~~~a~~aGa~~~~~e~~~~~~~~~~~~~~~~~~~~v~Glya~Ge~~~gvh---G~nrlg~~~~~e~~v  307 (322)
T d1d4ca2         231 KATNHPGATGDGLDVALQAGAATRDLEMGGLVIDTKAEVKSEKTGKPITGLYAAGEVTGGVH---GANRLGGNAISDIVT  307 (322)
T ss_dssp             CBCSCTTCSSHHHHHHHHTTBCEECTTCCEECCCTTCEEEBTTTSSEEEEEEECGGGBCSSS---TTSCCTTHHHHHHHH
T ss_pred             cccCCCCccCHHHHHHHHcCCcceecccceEEecCceEEEECCCCCEeCceEEchhhcCCcc---ccccchhhHHHHHHH
Confidence                              010   112333333       3445677899999999986432   11110 023344444


Q ss_pred             HHHHHHHHHh
Q 013952          320 SAEQAVKTIM  329 (433)
Q Consensus       320 ~g~~aa~~i~  329 (433)
                      -|++|+.++.
T Consensus       308 ~g~~ag~~aa  317 (322)
T d1d4ca2         308 YGRIAGASAA  317 (322)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            4666666554

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.36  E-value=2.4e-12  Score=114.33  Aligned_cols=68  Identities=21%  Similarity=0.137  Sum_probs=53.9

Q ss_pred             CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhhhccccc
Q 013952          203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAE  273 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~~~  273 (433)
                      +..+...+.+.+++.|++++.+++|++|..  ++..+.|++++| ++.||.||+|+|...+.-.-..++..
T Consensus       150 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~--~~~~~~V~t~~g-~i~a~~vV~AaG~~s~~l~~~~G~~~  217 (276)
T d1ryia1         150 PYFVCKAYVKAAKMLGAEIFEHTPVLHVER--DGEALFIKTPSG-DVWANHVVVASGVWSGMFFKQLGLNN  217 (276)
T ss_dssp             HHHHHHHHHHHHHHTTCEEETTCCCCEEEC--SSSSEEEEETTE-EEEEEEEEECCGGGTHHHHHHTTCCC
T ss_pred             cccchhHHHHHHHHcCCEEecceEEEeEEe--ecceEEEecCCe-EEEcCEEEECCCccHHHHHhhcCCCc
Confidence            567888899999999999999999999987  556678999887 79999999999976433222334443

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.32  E-value=3.3e-11  Score=108.57  Aligned_cols=124  Identities=15%  Similarity=0.148  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCC--C--cEEECCEEEEccc-CccChhhhh----------
Q 013952          204 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD--G--RTLEADIVVVGVG-GRPLISLFK----------  268 (433)
Q Consensus       204 ~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~--g--~~i~~d~vi~a~G-~~p~~~~~~----------  268 (433)
                      ..+...+.+.+++.|+++++++++.++..+++|++..|...+  +  ..+.|+.||+|+| +..|.++..          
T Consensus       145 ~~~~~~l~~~a~~~gv~i~~~~~v~~li~~~~G~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG~~~n~~~~~~~~p~~~~~~  224 (308)
T d1y0pa2         145 AHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKADAVILATGGFAKNNERVAKLDPSLKGFI  224 (308)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSEEEEEEEECTTSCEEEEEEEETTTEEEEEECSEEEECCCCCTTCHHHHHHHCGGGTTCC
T ss_pred             HHHHHHHHHHHHhccceEEEeeccchhhhhcccccccccccccccceeEeecCeEEEccCcccccHHHHHHhccchhhhc
Confidence            456777888888999999999999998876778888887643  2  3589999999999 444443321          


Q ss_pred             ---------ccccc--CCCcEEeC-CCCC----------CCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHH
Q 013952          269 ---------GQVAE--NKGGIETD-DFFK----------TSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVK  326 (433)
Q Consensus       269 ---------~~~~~--~~g~i~vd-~~~~----------t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~  326 (433)
                               .++.+  .-|.-..| ++.|          +..|++|++|.|++..+...  +.--..+....--|+.|++
T Consensus       225 ~~~~~~~tGdg~~ma~~aGa~l~~me~vq~~p~~~~~~~~~~~gl~a~G~~~~g~hg~n--rlg~~~~~~~~~~g~~ag~  302 (308)
T d1y0pa2         225 STNQPGAVGDGLDVAENAGGALKDMQYIDTKAEVMNAKKQVIPGLYGAGEVTGGVHGAN--RLGGNAISDIITFGRLAGE  302 (308)
T ss_dssp             BCSCTTCSSHHHHHHHHTTCCEECTTCBCTTCEEECTTSCEEEEEEECSTTEESSSTTS--CCTTHHHHHHHHHHHHHHH
T ss_pred             ccCCCcccCHHHHHHHHcCCCccCccceecccceecCCCCcccceeehhhhhccccCcC--CCchhhHHHHHHHHHHHHH
Confidence                     01111  22333444 3332          24699999999987543211  0000233444445666666


Q ss_pred             HHh
Q 013952          327 TIM  329 (433)
Q Consensus       327 ~i~  329 (433)
                      +..
T Consensus       303 ~a~  305 (308)
T d1y0pa2         303 EAA  305 (308)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.32  E-value=1.2e-11  Score=109.97  Aligned_cols=58  Identities=19%  Similarity=0.355  Sum_probs=49.1

Q ss_pred             CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccC
Q 013952          203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL  263 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~  263 (433)
                      +..+...+.+.+++.|++++++++|.++...++ . +.|.+++| ++.||.||+|+|...+
T Consensus       149 p~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~-~-v~V~t~~g-~i~a~~VViAaG~~s~  206 (281)
T d2gf3a1         149 SENCIRAYRELAEARGAKVLTHTRVEDFDISPD-S-VKIETANG-SYTADKLIVSMGAWNS  206 (281)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEECSS-C-EEEEETTE-EEEEEEEEECCGGGHH
T ss_pred             ccccccccccccccccccccCCcEEEEEEEECC-E-EEEEECCc-EEEcCEEEECCCCcch
Confidence            567888999999999999999999999998333 3 57888887 6999999999996543

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=99.28  E-value=1.1e-11  Score=95.20  Aligned_cols=110  Identities=18%  Similarity=0.154  Sum_probs=90.0

Q ss_pred             CCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhc
Q 013952          138 AKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK  217 (433)
Q Consensus       138 ~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~  217 (433)
                      .++++++...+ ...       +++|+|+|||+|.+++|.|..|.+...+|++++|.+.+.   .++.+.+.+++..+..
T Consensus        11 gkgV~yca~cD-~~~-------~~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~~---~~~~~~~~~~~~~~~~   79 (126)
T d1trba2          11 GRGVSACATSD-GFF-------YRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR---AEKILIKRLMDKVENG   79 (126)
T ss_dssp             TTTEESCHHHH-GGG-------GTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCC---CCHHHHHHHHHHHHTS
T ss_pred             CCCEEEEEecc-hHH-------hCCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeeccccc---chhHHHHHHHHhhccc
Confidence            46777654333 222       278999999999999999999999999999999998764   3788888888888999


Q ss_pred             CcEEEcCCeEEEEEecCCCcEEEEEeCCC------cEEECCEEEEccc
Q 013952          218 GIKIIKGTVAVGFTTNADGEVKEVKLKDG------RTLEADIVVVGVG  259 (433)
Q Consensus       218 GV~v~~~~~v~~i~~~~~g~~~~v~~~~g------~~i~~d~vi~a~G  259 (433)
                      +|.+++++.+.++.. ++..+..|++.+.      +++++|-+++++|
T Consensus        80 ~i~~~~~~~v~~i~G-~~~~v~~v~l~~~~~~e~~~~l~~dgvFv~iG  126 (126)
T d1trba2          80 NIILHTNRTLEEVTG-DQMGVTGVRLRDTQNSDNIESLDVAGLFVAIG  126 (126)
T ss_dssp             SEEEECSCEEEEEEE-CSSSEEEEEEECCTTCCCCEEEECSEEEECSC
T ss_pred             ceeEecceEEEEEEC-CCCceEEEEEEECCCCceEEEEECCEEEEEeC
Confidence            999999999999998 3445778887542      4699999999987

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.28  E-value=7.2e-12  Score=103.85  Aligned_cols=108  Identities=24%  Similarity=0.419  Sum_probs=82.1

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHh
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   83 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (433)
                      +.+|+|||||++|+.+|..|++.|.+ ..++++++. ..+|.++.++..+.......              .........
T Consensus         3 ~a~VvIIGgG~~G~e~A~~l~~~g~~-v~i~~~~~~~~~~~~~~~l~~~~~~~~~~~--------------~~~~~~~~~   67 (183)
T d1d7ya1           3 KAPVVVLGAGLASVSFVAELRQAGYQ-GLITVVGDEAERPYDRPPLSKDFMAHGDAE--------------KIRLDCKRA   67 (183)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHHHTCC-SCEEEEESSCSCCBCSGGGGTTHHHHCCGG--------------GSBCCGGGS
T ss_pred             CCCEEEECccHHHHHHHHHHHhcCCc-eEEEEEecccccchhhHHHhhhhhhhhhhh--------------hHHHHHhhc
Confidence            35799999999999999999999864 557777777 66666655544332111100              111233446


Q ss_pred             CCcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccc
Q 013952           84 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLR  127 (433)
Q Consensus        84 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~  127 (433)
                      .+++++.+..+..++.+...+.+.+++++.||.+++|+|..|..
T Consensus        68 ~~i~~~~~~~v~~i~~~~~~~~~~~g~~~~~D~vi~a~G~~p~~  111 (183)
T d1d7ya1          68 PEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRA  111 (183)
T ss_dssp             TTCEEEETCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECC
T ss_pred             CCeEEEEeccccccccccceeEecCCcEeeeeeEEEEEEEEccc
Confidence            78999999999999999999999999999999999999998864

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=99.27  E-value=6.5e-12  Score=104.09  Aligned_cols=110  Identities=21%  Similarity=0.234  Sum_probs=77.1

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhCC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKG   85 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (433)
                      ++|||||||++|+.+|.+|++.+. +.+|+++|++...+..+ ............           .............+
T Consensus         3 krivIvGgG~~G~e~A~~l~~~~~-~~~Vtlie~~~~~~~~~-~~~~~~~~~~~~-----------~~~~~~~~~~~~~~   69 (186)
T d1fcda1           3 RKVVVVGGGTGGATAAKYIKLADP-SIEVTLIEPNTDYYTCY-LSNEVIGGDRKL-----------ESIKHGYDGLRAHG   69 (186)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCT-TSEEEEECSCSCEECST-THHHHHHTSSCG-----------GGGEECSHHHHTTT
T ss_pred             CcEEEECccHHHHHHHHHHHHcCC-CCcEEEEECCCcccccc-ccccccchhhhh-----------hhhhhhhhhccccc
Confidence            689999999999999999999874 56799999983222221 111111110000           00122334456678


Q ss_pred             cEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccC
Q 013952           86 IELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLT  129 (433)
Q Consensus        86 v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~  129 (433)
                      +.+..+ .+..++...+.+.+.++++++||+||+|||..+..+.
T Consensus        70 v~~~~~-~~~~~~~~~~~~~~~~~~~i~~D~li~atG~~~~~~~  112 (186)
T d1fcda1          70 IQVVHD-SATGIDPDKKLVKTAGGAEFGYDRCVVAPGIELIYDK  112 (186)
T ss_dssp             EEEECC-CEEECCTTTTEEEETTSCEEECSEEEECCCEEECCTT
T ss_pred             eeEeee-eeEeeeeccceeecccceeeccceEEEEeccccchhh
Confidence            888876 7777888888999999999999999999999887554

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=99.25  E-value=2.8e-10  Score=103.67  Aligned_cols=125  Identities=17%  Similarity=0.180  Sum_probs=81.7

Q ss_pred             CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEECCEEEEcccCccCh------------h
Q 013952          203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGGRPLI------------S  265 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~---~~g~--~i~~d~vi~a~G~~p~~------------~  265 (433)
                      ...+...+.+..++.||+++.++.+.++.. +++++..+..   .+|+  .+.++.||+|||--...            +
T Consensus       157 G~~i~~~l~~~~~~~gv~i~~~~~~~~li~-~~~~v~g~~~~~~~~g~~~~i~Ak~VvlATGG~~~~~~~t~~~~~~tGd  235 (336)
T d2bs2a2         157 GHTMLFAVANECLKLGVSIQDRKEAIALIH-QDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGRIYKNTTNAVVCEGT  235 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCEEECSEEEEEEEE-ETTEEEEEEEEETTTCCEEEEECSEEEECCCCCGGGSSSBSSCTTCSCH
T ss_pred             HHHHHHHHHHHHHhccccccceeeeeeccc-ccccccceeEEeccCCcEEEEecCeEEEeccccccccccccccccccch
Confidence            356677778888999999999999998876 4666655544   4564  58899999999843211            0


Q ss_pred             -h---hhcc-ccc-CCCcEEeCCCCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHh
Q 013952          266 -L---FKGQ-VAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIM  329 (433)
Q Consensus       266 -~---~~~~-~~~-~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~  329 (433)
                       +   +..+ ..+ +-++|.+|+.++|+.|++|++|++......... +.--..+..+...+..+++.+.
T Consensus       236 g~~~~~~~G~~~l~~~~~iq~~~~~~t~~~gl~a~G~~~~~~~~~~~-~~~~~~~~e~~~~~~~~ge~~~  304 (336)
T d2bs2a2         236 GTAIALETGIAQLGNMGGIRTDYRGEAKLKGLFSAGEAACWDMHGFN-RLGGNSVSEAVVAGMIVGEYFA  304 (336)
T ss_dssp             HHHHHHTTSSSCEECCCEEECCTTSBCSSBTEEECGGGEECCSSTTC-CCTTHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhhccccceeechhhcccCCcceeccccccccccccc-cchhhccchhhhhcchhHHHHH
Confidence             0   1223 223 667899999999999999999998764321110 0011234444455555555544

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.24  E-value=8.3e-12  Score=101.22  Aligned_cols=122  Identities=20%  Similarity=0.263  Sum_probs=86.3

Q ss_pred             ccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCe-----------------
Q 013952          125 VLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNID-----------------  187 (433)
Q Consensus       125 ~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~-----------------  187 (433)
                      |+.|+   |||.+.++|++..++     +..  +...+++|+|||+|++|+|+|..+.+.|.+                 
T Consensus         2 Pr~p~---IpG~d~~~V~~a~d~-----L~~--~~~~gkrVvVIGgG~~g~d~a~~~~r~G~~~~~~~~~~~~~~~~~~~   71 (162)
T d1ps9a2           2 PRTPP---IDGIDHPKVLSYLDV-----LRD--KAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSS   71 (162)
T ss_dssp             ECCCC---CBTTTSTTEEEHHHH-----HTS--CCCCCSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTT
T ss_pred             CCCCC---CCCCCCCCeEEHHHH-----hhC--ccccCCceEEEcCchhHHHHHHHHHHcCCccceeHhhhhhhccCCcc
Confidence            56666   799999999974322     111  112579999999999999999999998754                 


Q ss_pred             --------------------EEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCC-
Q 013952          188 --------------------VSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG-  246 (433)
Q Consensus       188 --------------------V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g-  246 (433)
                                          ++.+..........++..........++..||+++.++.+.+++.  +|..  +...+. 
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~--~gv~--~~~~g~e  147 (162)
T d1ps9a2          72 LQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKIDD--DGLH--VVINGET  147 (162)
T ss_dssp             CCSGGGBCTTCCCCCCCSSEEEEECSSCSCTTTTSCTTTHHHHHHHHHHTTCEEECSCEEEEEET--TEEE--EEETTEE
T ss_pred             hhhhcccccccceeccccceEEEEEeccchhccccchhhhHHHHHHHhhCCeEEEeeeEEEEEcC--CCCE--EecCCeE
Confidence                                333333332222224555666778889999999999999999975  5533  333322 


Q ss_pred             cEEECCEEEEcccC
Q 013952          247 RTLEADIVVVGVGG  260 (433)
Q Consensus       247 ~~i~~d~vi~a~G~  260 (433)
                      ++++||.||+|+|.
T Consensus       148 ~~i~aD~Vv~A~Gq  161 (162)
T d1ps9a2         148 QVLAVDNVVICAGQ  161 (162)
T ss_dssp             EEECCSEEEECCCE
T ss_pred             EEEECCEEEECCCC
Confidence            35899999999995

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.23  E-value=1.7e-10  Score=104.25  Aligned_cols=57  Identities=21%  Similarity=0.251  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC--CCc--EEECCEEEEcccC
Q 013952          204 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK--DGR--TLEADIVVVGVGG  260 (433)
Q Consensus       204 ~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~--~g~--~i~~d~vi~a~G~  260 (433)
                      ..+.+.+.+.+++.|+++++++++.++..++++++..+...  +++  .+.++.||+|+|-
T Consensus       148 ~~i~~~L~~~~~~~g~~i~~~~~v~~l~~~~~g~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG  208 (317)
T d1qo8a2         148 PEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGG  208 (317)
T ss_dssp             HHHHHHHHHHHHHTTCCEECSEEEEEEEECTTSBEEEEEEEETTTEEEEEEEEEEEECCCC
T ss_pred             hhhhHHHHHHhhhccceeeeccchhheeecccccceeeEeecccceEEEEeccceEEeccc
Confidence            46788888999999999999999999877678888877654  332  5789999999993

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.23  E-value=1.8e-11  Score=99.71  Aligned_cols=104  Identities=28%  Similarity=0.374  Sum_probs=75.3

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhCC
Q 013952            7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKG   85 (433)
Q Consensus         7 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (433)
                      +|+|||||++|+.+|..|++ +.+   |+|++++ ...+.++.++..+.......           .......+++.+.+
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~---Vtvv~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~   66 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYE---VTVIDKEPVPYYSKPMLSHYIAGFIPRN-----------RLFPYSLDWYRKRG   66 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSE---EEEECSSSSCCCCSTTHHHHHTTSSCGG-----------GGCSSCHHHHHHHT
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCC---EEEEeccccccccccchhhhhhhhhhhh-----------hhhHHHHHHHHhcc
Confidence            79999999999999999976 444   9999998 54555444333221110000           11345577888899


Q ss_pred             cEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCcc
Q 013952           86 IELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVL  126 (433)
Q Consensus        86 v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~  126 (433)
                      ++++.++.+..++...+.+. .++.++.||.+++|+|..|.
T Consensus        67 v~~~~~~~v~~i~~~~~~~~-~~~~~i~~D~li~a~G~~~~  106 (167)
T d1xhca1          67 IEIRLAEEAKLIDRGRKVVI-TEKGEVPYDTLVLATGAPNV  106 (167)
T ss_dssp             EEEECSCCEEEEETTTTEEE-ESSCEEECSEEEECCCEECC
T ss_pred             ceeeeecccccccccccccc-ccccccccceeEEEEEecCC
Confidence            99999999999987766554 45567999999999998764

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1.9e-11  Score=112.72  Aligned_cols=114  Identities=12%  Similarity=0.133  Sum_probs=72.8

Q ss_pred             HHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhh---------hhccccc--CCCc
Q 013952          209 FYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISL---------FKGQVAE--NKGG  277 (433)
Q Consensus       209 ~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~---------~~~~~~~--~~g~  277 (433)
                      ...+.+++.|++++++++|.+|..+++ . ..|++.+|++++||.||+|++...-..+         ....+..  ..+.
T Consensus       212 ~~~~l~~~~g~~i~~~~~v~~I~~~~~-~-v~v~~~~g~~~~ad~vI~a~p~~~~~~~~~~p~l~~~~~~~~~~~~~~~~  289 (383)
T d2v5za1         212 VSERIMDLLGDRVKLERPVIYIDQTRE-N-VLVETLNHEMYEAKYVISAIPPTLGMKIHFNPPLPMMRNQMITRVFPPGI  289 (383)
T ss_dssp             HHHHHHHHHGGGEEESCCEEEEECSSS-S-EEEEETTSCEEEESEEEECSCGGGGGGSEEESCCCHHHHHHTTSCCCTTH
T ss_pred             HHHHHHHHcCCeEEecCcceEEEecCC-e-EEEEECCCCEEECCEEEECCCHHHHhhCccCCCCCHHHHHHHHHhccCCc
Confidence            344556778999999999999987333 3 5689999999999999999874211111         0011111  1111


Q ss_pred             -EEeCCCCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccC
Q 013952          278 -IETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE  332 (433)
Q Consensus       278 -i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~  332 (433)
                       -.....++....+++.+|+.......        .....|..+|+.+|..|+...
T Consensus       290 ~~~~~~~~~~~~~~~~~~G~~~~~~~~--------g~~~ga~~~g~~~a~~i~~~~  337 (383)
T d2v5za1         290 LTQYGRVLRQPVDRIYFAGTETATHWS--------GYMEGAVEAGERAAREILHAM  337 (383)
T ss_dssp             HHHHGGGTTCCBTTEEECSGGGCSSST--------TSHHHHHHHHHHHHHHHHHHT
T ss_pred             cchhhhhhcCCcCceEeccccccccCC--------cchHHHHHHHHHHHHHHHHHh
Confidence             11223344566789999976543322        446668889999998886554

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=99.21  E-value=1e-11  Score=113.78  Aligned_cols=110  Identities=16%  Similarity=0.154  Sum_probs=67.3

Q ss_pred             HHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe--CCCcEEECCEEEEcccCc--------cChhh-hhcccc---cCCC
Q 013952          211 EGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL--KDGRTLEADIVVVGVGGR--------PLISL-FKGQVA---ENKG  276 (433)
Q Consensus       211 ~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~--~~g~~i~~d~vi~a~G~~--------p~~~~-~~~~~~---~~~g  276 (433)
                      ...+++.|++++++++|++|..++++....+..  .++++++||.||+|++..        |.... ....+.   ....
T Consensus       242 ~~l~~~~g~~i~~~~~V~~I~~~~~~v~v~~~~~~~~~~~~~aD~VI~A~p~~~l~~i~~~p~l~~~~~~ai~~~~~~~~  321 (370)
T d2iida1         242 TAMYRDIQDKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAVRLIKFNPPLLPKKAHALRSVFTPYQ  321 (370)
T ss_dssp             HHHHHHTGGGEESSCEEEEEEECSSCEEEEEECSSSCCCEEEESEEEECSCHHHHTTSEEESCCCHHHHHHHHHCCCTTH
T ss_pred             HHHHHhcCCccccCceEEEEEEeCCeEEEEEEecCCCeEEEEeeEEEecCCHHHHhhCccCCCCCHHHHHHHHhcCCccc
Confidence            344577899999999999999854443323333  334689999999998632        11110 000000   0000


Q ss_pred             cEEeCCCCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHh
Q 013952          277 GIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIM  329 (433)
Q Consensus       277 ~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~  329 (433)
                      ....++.+.+...+||++||++..+.         ..+..|+..|..||.+|.
T Consensus       322 ~~~~~~~~~~~~g~v~~aGd~~~~~~---------~~~~~a~~sG~~aA~~i~  365 (370)
T d2iida1         322 FQHFSDPLTASQGRIYFAGEYTAQAH---------GWIDSTIKSGLRAARDVN  365 (370)
T ss_dssp             HHHHHHHHHCCBTTEEECSGGGSSSS---------SCHHHHHHHHHHHHHHHH
T ss_pred             ccccchhhhcccCCEEEecccccCCC---------cccHHHHHHHHHHHHHHH
Confidence            11112223344567999999886653         235678999999999885

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.21  E-value=4.7e-11  Score=100.16  Aligned_cols=110  Identities=17%  Similarity=0.261  Sum_probs=78.5

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhCC
Q 013952            7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKG   85 (433)
Q Consensus         7 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (433)
                      +|+|||||++|+.+|..|++.+. ..+|++++++ ...|..+.++. ++... ....        ........+.+++.|
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~-~~~V~v~~~~~~~~~~~~~~~~-~l~~~-~~~~--------~~~~~~~~~~l~~~g   70 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHP-DAEIQWYEKGDFISFLSAGMQL-YLEGK-VKDV--------NSVRYMTGEKMESRG   70 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCT-TSEEEEEESSSSSSBCGGGHHH-HHTTS-SCCG--------GGSBSCCHHHHHHTT
T ss_pred             EEEEECCcHHHHHHHHHHHhcCC-CCeEEEEeCCCcccccccCcch-hhccc-ccch--------HHHHHhhHHHHHHCC
Confidence            69999999999999999999864 4679999988 44444333221 11110 0000        011234567788999


Q ss_pred             cEEEeCceEEEEECCCCEEEeC---CC--cEEecceEEEccCCCccc
Q 013952           86 IELILSTEIVRADIASKTLLSA---TG--LIFKYQILVIATGSTVLR  127 (433)
Q Consensus        86 v~~~~~~~v~~i~~~~~~v~~~---~~--~~~~~d~lvlAtG~~~~~  127 (433)
                      ++++.++.|.+++.+++.|++.   ++  .++.||.+++|+|+.+..
T Consensus        71 i~v~~~~~V~~i~~~~~~v~~~~~~~g~~~~~~~D~li~a~G~~~~~  117 (198)
T d1nhpa1          71 VNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFE  117 (198)
T ss_dssp             CEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECC
T ss_pred             cEEEEeeceeeEeeccccceeeecccccccccccceeeEeecceeec
Confidence            9999999999999999887643   33  357899999999987653

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.20  E-value=4.3e-13  Score=121.50  Aligned_cols=111  Identities=16%  Similarity=0.162  Sum_probs=67.9

Q ss_pred             HHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCC--cEEECCEEEEcccCccChhhhhcc-------cc-c-CC
Q 013952          207 AAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG--RTLEADIVVVGVGGRPLISLFKGQ-------VA-E-NK  275 (433)
Q Consensus       207 ~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g--~~i~~d~vi~a~G~~p~~~~~~~~-------~~-~-~~  275 (433)
                      ...+.+..++.|++++++++|++|+.++++.. .+...++  ++++||.||+|+|......++..-       +. . ..
T Consensus       222 ~~~~~~l~~~~g~~i~~~~~V~~I~~~~~~~~-v~~~~~~~~~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~~  300 (347)
T d2ivda1         222 QVLIDALAASLGDAAHVGARVEGLAREDGGWR-LIIEEHGRRAELSVAQVVLAAPAHATAKLLRPLDDALAALVAGIYNL  300 (347)
T ss_dssp             HHHHHHHHHHHGGGEESSEEEEEEECC--CCE-EEEEETTEEEEEECSEEEECSCHHHHHHHHTTTCHHHHHHHHTCCBT
T ss_pred             HHHHHHHHHHhhcccccCCEEEEEEEeCCeEE-EEEEcCCeEEEEECCEEEECCCHHHHHHhccCCCHHHHHHhhcceec
Confidence            33444555667999999999999987444422 2222333  469999999999854333333210       00 0 11


Q ss_pred             Cc---EEeCCCCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHh
Q 013952          276 GG---IETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIM  329 (433)
Q Consensus       276 g~---i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~  329 (433)
                      +.   +...+...++.|++|++||...+.           .+..++.+|+.+|+.|+
T Consensus       301 ~~~~~~~~~~~~~~~~p~~~~~G~~~~g~-----------~~~~~~~~g~~~a~~~~  346 (347)
T d2ivda1         301 GHLERVAAIDAALQRLPGLHLIGNAYKGV-----------GLNDCIRNAAQLADALV  346 (347)
T ss_dssp             THHHHHHHHHHHHHTSTTEEECSTTTSCC-----------SHHHHHHHHHHHHHHHC
T ss_pred             CcccceecccccccCCCCEEEecccccCC-----------CHHHHHHHHHHHHHHhh
Confidence            11   111122245799999999986643           35667889999998875

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.19  E-value=3.6e-11  Score=91.08  Aligned_cols=93  Identities=18%  Similarity=0.102  Sum_probs=72.7

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      ..+++|||||+.|+.+|..|++.|.+   |+|+++......                  .+..    .......+.+++.
T Consensus        21 p~~vvIiGgG~ig~E~A~~l~~~G~~---Vtlve~~~~~l~------------------~~d~----~~~~~~~~~l~~~   75 (116)
T d1gesa2          21 PERVAVVGAGYIGVELGGVINGLGAK---THLFEMFDAPLP------------------SFDP----MISETLVEVMNAE   75 (116)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSST------------------TSCH----HHHHHHHHHHHHH
T ss_pred             CCEEEEECCChhhHHHHHHhhccccE---EEEEeecchhhh------------------hcch----hhHHHHHHHHHHC
Confidence            46899999999999999999999987   999999821110                  0000    0123456778889


Q ss_pred             CcEEEeCceEEEEECCCC---EEEeCCCcEEecceEEEccC
Q 013952           85 GIELILSTEIVRADIASK---TLLSATGLIFKYQILVIATG  122 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~---~v~~~~~~~~~~d~lvlAtG  122 (433)
                      |++++.++.+..+.....   ++.+++|+++++|.+++|||
T Consensus        76 GV~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~D~vi~a~G  116 (116)
T d1gesa2          76 GPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIG  116 (116)
T ss_dssp             SCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred             CCEEEeCCEEEEEEEcCCcEEEEEECCCCEEEcCEEEEecC
Confidence            999999999998876542   57788999999999999998

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.19  E-value=8.8e-11  Score=89.97  Aligned_cols=109  Identities=20%  Similarity=0.250  Sum_probs=82.8

Q ss_pred             CCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHH
Q 013952          136 ADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYA  215 (433)
Q Consensus       136 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~  215 (433)
                      ....+++++..++. ..       +++|+|+|||+|.++++.|..|.+...+|++++|.+.+..   ++.+.+.   ..+
T Consensus        12 ~~gkGV~yca~cD~-~~-------~~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~~~---~~~~~~~---~~~   77 (126)
T d1fl2a2          12 YRTKGVTYCPHCDG-PL-------FKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA---DQVLQDK---LRS   77 (126)
T ss_dssp             TBTTTEESCHHHHG-GG-------GBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCS---CHHHHHH---HHT
T ss_pred             hcCCCEEEEEecCh-hh-------cCCceEEEEeCCHHHHHHHHhhhccCCceEEEeccccccc---ccccccc---ccc
Confidence            33567887544332 22       2799999999999999999999999999999999887643   4443332   233


Q ss_pred             hcCcEEEcCCeEEEEEecCCCcEEEEEeCC---C--cEEECCEEEEccc
Q 013952          216 NKGIKIIKGTVAVGFTTNADGEVKEVKLKD---G--RTLEADIVVVGVG  259 (433)
Q Consensus       216 ~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~---g--~~i~~d~vi~a~G  259 (433)
                      ..+|++++++++.++.. +++.+..+++.+   |  +++++|-+++++|
T Consensus        78 ~~~I~v~~~~~v~~i~G-~~~~v~~v~l~~~~tge~~~l~vdgvFv~IG  125 (126)
T d1fl2a2          78 LKNVDIILNAQTTEVKG-DGSKVVGLEYRDRVSGDIHNIELAGIFVQIG  125 (126)
T ss_dssp             CTTEEEESSEEEEEEEE-SSSSEEEEEEEETTTCCEEEEECSEEEECSC
T ss_pred             ccceeEEcCcceEEEEc-cccceeeEEEEECCCCCEEEEECCEEEEEeC
Confidence            46799999999999998 335677787753   3  4699999999988

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.18  E-value=8.8e-11  Score=89.40  Aligned_cols=92  Identities=17%  Similarity=0.326  Sum_probs=72.4

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      ..+++|||||+.|+-+|..|+++|.+   |+++++...++.+.              ++       ........+.+++.
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~~---Vtli~~~~~~l~~~--------------~~-------~~~~~~~~~~l~~~   85 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGVH---VSLVETQPRLMSRA--------------AP-------ATLADFVARYHAAQ   85 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSSTTTTT--------------SC-------HHHHHHHHHHHHTT
T ss_pred             CCeEEEECcchhHHHHHHHhhcccce---EEEEeecccccccc--------------CC-------HHHHHHHHHHHHHC
Confidence            47899999999999999999999987   99999982222110              00       00023456778889


Q ss_pred             CcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccC
Q 013952           85 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATG  122 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG  122 (433)
                      ||+++.++.+..+.  ...+++++|+++++|.+|+|+|
T Consensus        86 GV~i~~~~~v~~~~--~~~v~l~dg~~i~~D~vi~a~G  121 (121)
T d1d7ya2          86 GVDLRFERSVTGSV--DGVVLLDDGTRIAADMVVVGIG  121 (121)
T ss_dssp             TCEEEESCCEEEEE--TTEEEETTSCEEECSEEEECSC
T ss_pred             CcEEEeCCEEEEEe--CCEEEECCCCEEECCEEEEeeC
Confidence            99999999998876  3578899999999999999998

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=99.15  E-value=1.2e-11  Score=110.24  Aligned_cols=122  Identities=16%  Similarity=0.140  Sum_probs=76.1

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-C--CCC--CCCCccccccCCCCCCCCCCcccc----------
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-V--APY--ERPALSKAYLFPEGTARLPGFHVC----------   68 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~----------   68 (433)
                      ...||+|||||++||++|++|++.|++   |+|+|+. .  ..|  .+. .+.....+......+.....          
T Consensus         6 ~~~dV~IIGAG~sGl~~a~~L~~~G~~---v~i~Ek~~~iGGtW~~n~y-pg~~~d~~~~~~~~s~~~~~~~~~~~~~~~   81 (298)
T d1w4xa1           6 EEVDVLVVGAGFSGLYALYRLRELGRS---VHVIETAGDVGGVWYWNRY-PGARCDIESIEYCYSFSEEVLQEWNWTERY   81 (298)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSSCTHHHHCCC-TTCBCSSCTTTSSCCSCHHHHHHCCCCBSS
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCC---EEEEEcCCCcccccccCCC-CCceeccccccccccccccccCCCCCcccc
Confidence            357999999999999999999999987   9999998 2  111  000 00000000000000000000          


Q ss_pred             -cCCCCCCCCHhHHHhCCc--EEEeCceEEEEEC--CCC--EEEeCCCcEEecceEEEccC--CCccccC
Q 013952           69 -VGSGGERLLPEWYKEKGI--ELILSTEIVRADI--ASK--TLLSATGLIFKYQILVIATG--STVLRLT  129 (433)
Q Consensus        69 -~~~~~~~~~~~~~~~~~v--~~~~~~~v~~i~~--~~~--~v~~~~~~~~~~d~lvlAtG--~~~~~~~  129 (433)
                       .+......+.++.+++++  ++.++++|.++..  +.+  .|.+.++.++++|+||+|||  +.|..|.
T Consensus        82 p~~~e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~~~i~atG~ls~~~~p~  151 (298)
T d1w4xa1          82 ASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSDALTGA  151 (298)
T ss_dssp             CBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCTTHH
T ss_pred             CccchHHHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccccccccccceEEEeecccccccCCc
Confidence             000112234555667777  5889999998863  333  68888899999999999999  4666665

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.14  E-value=1.2e-10  Score=90.28  Aligned_cols=95  Identities=15%  Similarity=0.290  Sum_probs=72.8

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHh
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   83 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (433)
                      +..+++|||||+.|+.+|..|++.|.+   |+++++...++.+.              ++       ........+.+++
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~---Vtvie~~~~~l~~~--------------~~-------~~~~~~~~~~~~~   89 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATAIKANMH---VTLLDTAARVLERV--------------TA-------PPVSAFYEHLHRE   89 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSTTTTT--------------SC-------HHHHHHHHHHHHH
T ss_pred             cCCEEEEECCchHHHHHHHHHHhhCcc---eeeeeecccccccc--------------cc-------hhhhhhhhhcccc
Confidence            357899999999999999999999987   99999982222110              00       0001344567788


Q ss_pred             CCcEEEeCceEEEEECCC-----CEEEeCCCcEEecceEEEccC
Q 013952           84 KGIELILSTEIVRADIAS-----KTLLSATGLIFKYQILVIATG  122 (433)
Q Consensus        84 ~~v~~~~~~~v~~i~~~~-----~~v~~~~~~~~~~d~lvlAtG  122 (433)
                      .|++++.++.+..++...     ..+.+++|+++++|.+|+|+|
T Consensus        90 ~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~G  133 (133)
T d1q1ra2          90 AGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG  133 (133)
T ss_dssp             HTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred             cccEEEeCCeEEEEEEeCCCceEEEEECCCCCEEECCEEEEeeC
Confidence            999999999999987543     146789999999999999998

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=99.14  E-value=2.6e-11  Score=102.03  Aligned_cols=111  Identities=14%  Similarity=0.096  Sum_probs=68.1

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCcc-ccccCCC-----CCCCCCCcccccCCCCCCCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALS-KAYLFPE-----GTARLPGFHVCVGSGGERLL   77 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~~~   77 (433)
                      .||||||||||||+.||.++++.|.+   ++||+++ ......++.+ .+.....     ....-+....     ...+.
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~G~k---tllit~~~~~ig~~~cnp~~gg~~kg~l~reid~kG~av~a-----~raQ~   73 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQKGVR---VGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWA-----FHARA   73 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCC---EEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHH-----HHHHH
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCc---EEEEEeccchhcccccCCccccCCCcceeeeeeccchhhhh-----HHHHH
Confidence            59999999999999999999999998   9999987 2222211111 1100000     0000000000     00001


Q ss_pred             H-hHHHhCCcEEEeCceEEEEECCCCE---EEeCCCcEEecceEEEccCCC
Q 013952           78 P-EWYKEKGIELILSTEIVRADIASKT---LLSATGLIFKYQILVIATGST  124 (433)
Q Consensus        78 ~-~~~~~~~v~~~~~~~v~~i~~~~~~---v~~~~~~~~~~d~lvlAtG~~  124 (433)
                      . ......+++++.+ +|..+..+++.   |.+.+|.++.++.|||+||.-
T Consensus        74 k~~l~~~~nL~i~q~-~V~dli~e~~~v~gV~t~~G~~~~AkaVILtTGTF  123 (230)
T d2cula1          74 KYLLEGLRPLHLFQA-TATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSF  123 (230)
T ss_dssp             HHHHHTCTTEEEEEC-CEEEEEEETTEEEEEEETTSCCEECSEEEECCTTC
T ss_pred             HHHHhhhcCHHHHhc-cceeeEecccceeeEEeccccEEEEeEEEEccCcc
Confidence            1 1122358898886 67776655543   578889999999999999974

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.11  E-value=5.1e-11  Score=99.71  Aligned_cols=151  Identities=18%  Similarity=0.166  Sum_probs=100.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccCCccCC--------CCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEE
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWCMP--------RLFTADIAAFYEGYYANKGIKIIKGTVAVGFT  231 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~-~V~li~~~~~~~~--------~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~  231 (433)
                      .+++|+|||+|++|+++|..|++.|. +|+++++.+.+..        ................+.+..+.....+....
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~   82 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSENE   82 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTTTCEEEESCCBSTTS
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccchhhhhccccccccccccchhhhhhccceeEEeeEEeccce
Confidence            47899999999999999999999997 5999999876532        11345556666666777788888776653211


Q ss_pred             ecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh--h---ccccc-CCCcEEeC-CCCCCCCCCeEEcCccccccccc
Q 013952          232 TNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF--K---GQVAE-NKGGIETD-DFFKTSADDVYAVGDVATFPMKL  304 (433)
Q Consensus       232 ~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~--~---~~~~~-~~g~i~vd-~~~~t~~~~vfa~Gd~~~~~~~~  304 (433)
                      .         ...+..+..++.+++++|..+.....  .   ..... ..+....+ ..++|+.+.+|++||+++..+  
T Consensus        83 ~---------~~~~~~~~~~~~~~ia~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~vigg~~--  151 (196)
T d1gtea4          83 I---------TLNTLKEEGYKAAFIGIGLPEVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGMAN--  151 (196)
T ss_dssp             B---------CHHHHHHTTCCEEEECCCCCEECCCHHHHHHTTTSCBCTTSSBCCCTTTCBCSSTTEEECSGGGCSCC--
T ss_pred             e---------eeehhhccccceeeEEeccccCCccccccccccccccccccceeccccccCCCcccccccccccCCcc--
Confidence            1         11112234578899999954432222  1   11122 33444444 458999999999999987653  


Q ss_pred             cCcccccccHHHHHHHHHHHHHHHhc
Q 013952          305 YREMRRVEHVDHARKSAEQAVKTIMA  330 (433)
Q Consensus       305 ~~~~~~~~~~~~A~~~g~~aa~~i~~  330 (433)
                              ++..|..+|+.++..+..
T Consensus       152 --------~av~a~~~g~~~a~~v~r  169 (196)
T d1gtea4         152 --------TTVESVNDGKQASWYIHK  169 (196)
T ss_dssp             --------CHHHHHHHHHHHHHHHHH
T ss_pred             --------hHHHHHHHHhhhehhHhh
Confidence                    345566777777766543

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=99.10  E-value=7.1e-11  Score=98.31  Aligned_cols=113  Identities=21%  Similarity=0.214  Sum_probs=72.7

Q ss_pred             CCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccc-cCCCCCCCCHhHH
Q 013952            3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVC-VGSGGERLLPEWY   81 (433)
Q Consensus         3 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~   81 (433)
                      .+.+||+||||||+||+||.+|++.|++   |+|||+...       .+.+.......+.++++.. .+....+.....+
T Consensus         3 ~k~~dVvIIGGGpaGl~AA~~~ar~g~~---v~iie~~~~-------~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~   72 (190)
T d1trba1           3 TKHSKLLILGSGPAGYTAAVYAARANLQ---PVLITGMEK-------GGQLTTTTEVENWPGDPNDLTGPLLMERMHEHA   72 (190)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHTTTCC---CEEECCSST-------TGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCc---eEEEEeecc-------cccccccchhhhhhccccccchHHHHHHHHHHH
Confidence            3568999999999999999999999988   999998711       1112222222223322211 0011112234455


Q ss_pred             HhCCcEEEeCceEEEEECCCCE-EEeCCCcEEecceEEEccCCCcc
Q 013952           82 KEKGIELILSTEIVRADIASKT-LLSATGLIFKYQILVIATGSTVL  126 (433)
Q Consensus        82 ~~~~v~~~~~~~v~~i~~~~~~-v~~~~~~~~~~d~lvlAtG~~~~  126 (433)
                      .+.++.+..+ .|..++...+. ........+..+.+++++|..++
T Consensus        73 ~~~~~~~~~~-~V~~~~~~~~~~~v~~~~~~~~~~~viva~G~~~~  117 (190)
T d1trba1          73 TKFETEIIFD-HINKVDLQNRPFRLNGDNGEYTCDALIIATGASAR  117 (190)
T ss_dssp             HHTTCEEECC-CEEEEECSSSSEEEEESSCEEEEEEEEECCCEEEC
T ss_pred             HhcCcEEecc-eeEEEecCCCcEEEEEeeeeEeeeeeeeecceeee
Confidence            6788888875 78888876653 22334557899999999998664

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.08  E-value=3.3e-11  Score=99.82  Aligned_cols=110  Identities=18%  Similarity=0.257  Sum_probs=69.4

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      .|||+||||||+|++||.++++.|++   |+|||+..        .+.+.......+++.+....+......+....++.
T Consensus         1 ~yDViIIGgGpaGl~AAi~aar~G~~---v~iie~~~--------gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   69 (184)
T d1fl2a1           1 AYDVLIVGSGPAGAAAAIYSARKGIR---TGLMGERF--------GGQILDTVDIENYISVPKTEGQKLAGALKVHVDEY   69 (184)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCC---EEEECSST--------TGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCe---EEEEEEec--------CCcccccccceeccccchhhhHHHHHHHHHHhhhe
Confidence            38999999999999999999999998   99999861        11111111112222222111111112233445667


Q ss_pred             CcEEEeCceEEEEECCC-----CEEEeCCCcEEecceEEEccCCCc
Q 013952           85 GIELILSTEIVRADIAS-----KTLLSATGLIFKYQILVIATGSTV  125 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~-----~~v~~~~~~~~~~d~lvlAtG~~~  125 (433)
                      +.+......+..+....     ......+..++..+.+++++|..+
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  115 (184)
T d1fl2a1          70 DVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKL  115 (184)
T ss_dssp             CEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEE
T ss_pred             eceeeccceeeeecccccccceeeeeeecceeeecccccccccccc
Confidence            88888777776665432     234455667899999999999643

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.06  E-value=4.7e-10  Score=100.69  Aligned_cols=58  Identities=26%  Similarity=0.311  Sum_probs=51.6

Q ss_pred             CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013952          203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP  262 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p  262 (433)
                      +..+...+.+.+++.|++++.+++|+++.. .+++++.|++.+| +++||.||+|+|...
T Consensus       147 p~~l~~~l~~~a~~~gv~i~~~~~V~~i~~-~~~~v~~V~T~~g-~i~a~~VV~aaG~~s  204 (305)
T d1pj5a2         147 AARAVQLLIKRTESAGVTYRGSTTVTGIEQ-SGGRVTGVQTADG-VIPADIVVSCAGFWG  204 (305)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEE-ETTEEEEEEETTE-EEECSEEEECCGGGH
T ss_pred             hhhhhhhHHhhhhcccccccCCceEEEEEE-eCCEEEEEeccce-eEECCEEEEecchhH
Confidence            578888999999999999999999999998 5777888998887 799999999999754

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.05  E-value=2.1e-10  Score=104.47  Aligned_cols=38  Identities=16%  Similarity=0.232  Sum_probs=32.5

Q ss_pred             CCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         2 m~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      |...++|+|||||++||+||..|++.+. ..+|+|+|++
T Consensus         1 m~~~KrVaIIGaG~sGl~~A~~L~~~~~-~~~v~vfEk~   38 (335)
T d2gv8a1           1 LPTIRKIAIIGAGPSGLVTAKALLAEKA-FDQVTLFERR   38 (335)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHTTTC-CSEEEEECSS
T ss_pred             CCCCCeEEEECcCHHHHHHHHHHHHhCC-CCCEEEEECC
Confidence            5556899999999999999999988764 2359999999

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.04  E-value=1.2e-10  Score=97.08  Aligned_cols=117  Identities=16%  Similarity=0.196  Sum_probs=73.1

Q ss_pred             CCCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCcccc-cCCCCCCCCH
Q 013952            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVC-VGSGGERLLP   78 (433)
Q Consensus         1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~   78 (433)
                      |...++||+||||||+|++||.+|++.|++   ++|+|+. .....   ....+.......+.++++.. .+......+.
T Consensus         1 m~~~~~~VvIIGgGpaGl~aA~~~ar~g~~---v~vie~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~   74 (192)
T d1vdca1           1 LETHNTRLCIVGSGPAAHTAAIYAARAELK---PLLFEGWMANDIA---PGGQLTTTTDVENFPGFPEGILGVELTDKFR   74 (192)
T ss_dssp             CEEEEEEEEEECCSHHHHHHHHHHHHTTCC---CEEECCSSBTTBC---TTCGGGGCSEECCSTTCTTCEEHHHHHHHHH
T ss_pred             CCcccceEEEECCCHHHHHHHHHHHHcCCc---EEEEEeecccccc---cccccccchhhhccccccccccchHHHHHHH
Confidence            444578999999999999999999999998   8999987 22111   11111111222222222211 1111112233


Q ss_pred             hHHHhCCcEEEeCceEEEEECCCCE-EEeCCCcEEecceEEEccCCC
Q 013952           79 EWYKEKGIELILSTEIVRADIASKT-LLSATGLIFKYQILVIATGST  124 (433)
Q Consensus        79 ~~~~~~~v~~~~~~~v~~i~~~~~~-v~~~~~~~~~~d~lvlAtG~~  124 (433)
                      +...++++++... .|..++..++. ....+...+.+|.+++++|..
T Consensus        75 ~q~~~~g~~i~~~-~V~~~~~~~~~~~v~~~~~~~~~~~~~~a~g~~  120 (192)
T d1vdca1          75 KQSERFGTTIFTE-TVTKVDFSSKPFKLFTDSKAILADAVILAIGAV  120 (192)
T ss_dssp             HHHHHTTCEEECC-CCCEEECSSSSEEEECSSEEEEEEEEEECCCEE
T ss_pred             HHHHhhcceeeee-eEEecccccCcEEecccceeeeeeeEEEEeeee
Confidence            4456789998875 78888876653 333455678999999999964

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.04  E-value=1e-10  Score=105.82  Aligned_cols=105  Identities=10%  Similarity=0.024  Sum_probs=67.1

Q ss_pred             CcEEEcCCeEEEEEecCCCc----EEEEEe-----CCCcEEECCEEEEcccCccChhhh--hccccc------------C
Q 013952          218 GIKIIKGTVAVGFTTNADGE----VKEVKL-----KDGRTLEADIVVVGVGGRPLISLF--KGQVAE------------N  274 (433)
Q Consensus       218 GV~v~~~~~v~~i~~~~~g~----~~~v~~-----~~g~~i~~d~vi~a~G~~p~~~~~--~~~~~~------------~  274 (433)
                      +.+++++++|++|....++.    ...+..     .+++.+++|.||+|++......+.  ......            .
T Consensus       243 ~~~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~Vi~a~p~~~l~~l~~~~~~~~~~~~~~~~~~~~~~  322 (373)
T d1seza1         243 EDELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCDVKSMKIAKRGNPFLLNFIPEVYGHNY  322 (373)
T ss_dssp             TTTEETTCCEEEEEEECSSSSSSCEEEEEEBCSSSSCBCCCEESEEEECSCHHHHHTSEEESSSSBCCCTTSCCCCCTTH
T ss_pred             cceEecCCEEEEEEEeCCcccccccceEEecccCCCCceEEECCEEEECCchHHhhhcccccCCCccchhhhccccccCC
Confidence            56889999999998643321    122222     234578999999998743211110  000000            0


Q ss_pred             CCcEEeCCCCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCC
Q 013952          275 KGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEG  333 (433)
Q Consensus       275 ~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~  333 (433)
                      ++.+.+++.++|+.|+||++||+.+.+           .+..|+.+|+.||+.|+..++
T Consensus       323 ~~~~~~~~~~~t~~pglf~aGd~~~g~-----------~~~~A~~~G~~aA~~i~~~L~  370 (373)
T d1seza1         323 DSVLDAIDKMEKNLPGLFYAGNHRGGL-----------SVGKALSSGCNAADLVISYLE  370 (373)
T ss_dssp             HHHHHHHHHHHHHSTTEEECCSSSSCS-----------SHHHHHHHHHHHHHHHHHHHS
T ss_pred             CcEeecccccCCCCCCEEEEecCCCch-----------hHHHHHHHHHHHHHHHHHHHh
Confidence            112234456788999999999998653           467899999999999987654

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.03  E-value=2.6e-10  Score=86.15  Aligned_cols=93  Identities=19%  Similarity=0.271  Sum_probs=68.7

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      ..+++|||||+.|+-+|..|++.|.+   |+++++.....                  +.+.    .+..+.+.+.+++.
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~~---Vtlve~~~~il------------------~~~d----~~~~~~l~~~l~~~   75 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGAQ---VSVVEARERIL------------------PTYD----SELTAPVAESLKKL   75 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCE---EEEECSSSSSS------------------TTSC----HHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHhhcccc---eEEEeeecccc------------------cccc----chhHHHHHHHHHhh
Confidence            46899999999999999999999987   99999982111                  0000    00123456778889


Q ss_pred             CcEEEeCceEEEEECCCCEEEeCCC--cEEecceEEEccC
Q 013952           85 GIELILSTEIVRADIASKTLLSATG--LIFKYQILVIATG  122 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~~v~~~~~--~~~~~d~lvlAtG  122 (433)
                      |++++.++.|..++.....+...++  +++++|.+++|+|
T Consensus        76 gV~i~~~~~V~~i~~~~~~~~~~~~~~~~i~~D~vi~A~G  115 (115)
T d1lvla2          76 GIALHLGHSVEGYENGCLLANDGKGGQLRLEADRVLVAVG  115 (115)
T ss_dssp             TCEEETTCEEEEEETTEEEEECSSSCCCEECCSCEEECCC
T ss_pred             cceEEcCcEEEEEcCCeEEEEEcCCCeEEEEcCEEEEecC
Confidence            9999999999999754333333333  5799999999998

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.02  E-value=6.6e-10  Score=84.19  Aligned_cols=96  Identities=18%  Similarity=0.268  Sum_probs=71.3

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      ..+++|||||+.|+-+|..+.+......+|+++++.....                  +.+.    ++....+.+.+++.
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il------------------~~~d----~~~~~~~~~~l~~~   75 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL------------------RGFD----SELRKQLTEQLRAN   75 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSS------------------TTSC----HHHHHHHHHHHHHT
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceeccccccc------------------cccc----chhhHHHHHHHhhC
Confidence            4689999999999999988776643334599999881111                  0000    00123456778899


Q ss_pred             CcEEEeCceEEEEECCCC---EEEeCCCcEEecceEEEccC
Q 013952           85 GIELILSTEIVRADIASK---TLLSATGLIFKYQILVIATG  122 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~---~v~~~~~~~~~~d~lvlAtG  122 (433)
                      |++++.++.+..|....+   .+.+++|.++++|.+++|+|
T Consensus        76 GI~v~~~~~v~~i~~~~~g~~~v~~~~g~~i~~D~Vi~a~G  116 (117)
T d1feca2          76 GINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIG  116 (117)
T ss_dssp             TEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred             cEEEEcCCEEEEEEECCCCEEEEEECCCCEEEcCEEEEecC
Confidence            999999999999975432   57889999999999999998

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.01  E-value=4.6e-11  Score=102.04  Aligned_cols=118  Identities=20%  Similarity=0.251  Sum_probs=68.3

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-C---CCCCCCCccccccCCC-------CCCCCCCcccccCCCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-V---APYERPALSKAYLFPE-------GTARLPGFHVCVGSGG   73 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~---~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~   73 (433)
                      +||+|||||||+|++||.++++.|.+   |+|||++ .   +.+..|..++.++...       .......+........
T Consensus         5 ~~DlvVIG~GpaGl~aA~~aa~~G~~---V~liE~~~~GG~c~~~gc~p~k~~~~~~~~~~~~~~~~~~~~~g~~~~~~~   81 (220)
T d1lvla1           5 QTTLLIIGGGPGGYVAAIRAGQLGIP---TVLVEGQALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASPR   81 (220)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHTCC---EEEECSSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCC
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCCCcccccccccchhhhhhHHHHhhhhhccccccceEEeccce
Confidence            68999999999999999999999998   9999987 2   1112222222211100       0000000000000000


Q ss_pred             -----------------CCCCHhHHHhCCcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccC
Q 013952           74 -----------------ERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLT  129 (433)
Q Consensus        74 -----------------~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~  129 (433)
                                       ......+....+++++.+.... .+  ...+. .++.++.+|.+++|||++|..+|
T Consensus        82 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~~~~-~~--~~~~~-~~~~~i~a~~viiAtG~~p~~lp  150 (220)
T d1lvla1          82 LDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKV-LD--GKQVE-VDGQRIQCEHLLLATGSSSVELP  150 (220)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEE-EE--TTEEE-ETTEEEECSEEEECCCEEECCBT
T ss_pred             ehHHHHhhhheeEEeeeccchhhhhccCceEEEEeeecc-cC--ccccc-ccceeEeeceeeEcCCCCccccc
Confidence                             0011233456788888875433 22  23333 35568999999999999987654

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.01  E-value=1.3e-09  Score=83.47  Aligned_cols=108  Identities=18%  Similarity=0.182  Sum_probs=80.9

Q ss_pred             CCCEEEecCHHHH-HHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHh
Q 013952          138 AKNIFYLREIDDA-DKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYAN  216 (433)
Q Consensus       138 ~~~v~~~~~~~~~-~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~  216 (433)
                      .+++.++.+++.+ ..       +++|.|+|||+|.+++|.|.+|++...+|++++|.+.+..   ++...+   +..+.
T Consensus        16 gkGVsyca~CDg~a~~-------frgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~ra---~~~~~~---~l~~~   82 (130)
T d1vdca2          16 NRGISACAVCDGAAPI-------FRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA---SKIMQQ---RALSN   82 (130)
T ss_dssp             TTTEESCHHHHTTSGG-------GTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS---CHHHHH---HHHTC
T ss_pred             CCcEEEEEEecCchHH-------hCCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEecccccc---chhhhh---ccccC
Confidence            3678776655432 12       2689999999999999999999999999999999987754   444443   33456


Q ss_pred             cCcEEEcCCeEEEEEecCC-CcEEEEEeCC---C--cEEECCEEEEcc
Q 013952          217 KGIKIIKGTVAVGFTTNAD-GEVKEVKLKD---G--RTLEADIVVVGV  258 (433)
Q Consensus       217 ~GV~v~~~~~v~~i~~~~~-g~~~~v~~~~---g--~~i~~d~vi~a~  258 (433)
                      ..|++++++++.++..+.. +.+..+.+.+   +  +++++|-+++++
T Consensus        83 ~nI~v~~~~~v~~i~Gd~~~~~v~~v~l~~~~tge~~~l~~dGvFVaI  130 (130)
T d1vdca2          83 PKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAI  130 (130)
T ss_dssp             TTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECS
T ss_pred             CceEEEeccEEEEEEccCCcccEEEEEEEECCCCCEEEEECCEEEEEC
Confidence            6799999999999998332 3465665532   3  579999999874

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.00  E-value=8.2e-10  Score=83.74  Aligned_cols=93  Identities=14%  Similarity=0.265  Sum_probs=70.7

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      ..+++|||||+.|+-.|..+++.|.+   |+++++.....                  |.+.    .+....+.+.+++.
T Consensus        22 p~~i~IiG~G~ig~E~A~~l~~~G~~---Vtiv~~~~~ll------------------~~~d----~ei~~~l~~~l~~~   76 (119)
T d3lada2          22 PGKLGVIGAGVIGLELGSVWARLGAE---VTVLEAMDKFL------------------PAVD----EQVAKEAQKILTKQ   76 (119)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSSSS------------------TTSC----HHHHHHHHHHHHHT
T ss_pred             CCeEEEECCChHHHHHHHHHHHcCCc---eEEEEeecccC------------------Cccc----chhHHHHHHHHHhc
Confidence            46899999999999999999999987   99999881111                  0000    00123467788899


Q ss_pred             CcEEEeCceEEEEECCCCE--EEeCCC---cEEecceEEEccC
Q 013952           85 GIELILSTEIVRADIASKT--LLSATG---LIFKYQILVIATG  122 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~~--v~~~~~---~~~~~d~lvlAtG  122 (433)
                      |++++.++.++++..++..  +++.++   +++.+|++++|+|
T Consensus        77 Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~~~~D~vlvAvG  119 (119)
T d3lada2          77 GLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             TEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSC
T ss_pred             CceeecCcEEEEEEEeCCEEEEEEEECCCCEEEECCEEEEeeC
Confidence            9999999999999877663  444333   5799999999998

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.99  E-value=1.6e-09  Score=94.56  Aligned_cols=139  Identities=22%  Similarity=0.300  Sum_probs=86.0

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc----------------------------------CCCCCCH-----
Q 013952          164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC----------------------------------MPRLFTA-----  204 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~----------------------------------~~~~~~~-----  204 (433)
                      .++|||+|+.|+.+|..+++.|.+|.++++...-                                  ...+..+     
T Consensus         3 DviVIG~G~aG~~aA~~aa~~G~~V~liE~~~~GGtc~n~gciPsK~l~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~   82 (259)
T d1onfa1           3 DLIVIGGGSGGMAAARRAARHNAKVALVEKSRLGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTKFSFNLPLLVER   82 (259)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSSTTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCHHHHHHH
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCeEEeeCCcchHHHHhhhhcccchhccccccccchhhhhhhhHHhh
Confidence            4799999999999999999999999999864210                                  0000001     


Q ss_pred             ------HHHHHHHHHHHhcCcEEEcCCe-E---EEEE--ecCCCcEEEEEeCCCcEEECCEEEEcccCcc-----Chhhh
Q 013952          205 ------DIAAFYEGYYANKGIKIIKGTV-A---VGFT--TNADGEVKEVKLKDGRTLEADIVVVGVGGRP-----LISLF  267 (433)
Q Consensus       205 ------~~~~~l~~~l~~~GV~v~~~~~-v---~~i~--~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p-----~~~~~  267 (433)
                            .+.+.+.+.+++.||+++.+.- .   ..+.  ...+.........+++.+++|.+++|||.+|     +.+.+
T Consensus        83 ~~~~i~~~~~~~~~~l~~~gV~vi~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~i~a~~iiIATGs~P~~~~~~~~~~  162 (259)
T d1onfa1          83 RDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVGRSPDTENL  162 (259)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCEEEESCCCCC--------------------------CBSSEEECCCCCBCCBCCTTTTS
T ss_pred             hheeeeccccchhhhcccccceEEeeecccccccccccccceeccccccCccceEEEeeeeEEEecCCCCcccccccccc
Confidence                  2233455677889999987642 1   1111  1001100011112335799999999999998     33333


Q ss_pred             ---hcccccCCCcEEeCCCCCCCCCCeEEcCccccccc
Q 013952          268 ---KGQVAENKGGIETDDFFKTSADDVYAVGDVATFPM  302 (433)
Q Consensus       268 ---~~~~~~~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~  302 (433)
                         ..++..+++.+.+|+..+|.+.++|++||++....
T Consensus       163 ~l~~~~i~ts~~~~~~d~~~~t~Vig~gaiGdv~~~~~  200 (259)
T d1onfa1         163 KLEKLNVETNNNYIVVDENQRTSVNNIYAVGDCCMVKK  200 (259)
T ss_dssp             SCTTTTCCBSSSCEEECTTCBCSSSSEEECSTTEEEC-
T ss_pred             ccccceeeecccccccccCCceeEeeEEEEEEeeehhh
Confidence               22344467889999999999999999999987653

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.99  E-value=3.1e-08  Score=91.03  Aligned_cols=121  Identities=20%  Similarity=0.274  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCC---------------CcEEECCEEEEcccCccChh--hh
Q 013952          205 DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD---------------GRTLEADIVVVGVGGRPLIS--LF  267 (433)
Q Consensus       205 ~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~---------------g~~i~~d~vi~a~G~~p~~~--~~  267 (433)
                      .+..++.+..++.|+.+..+..+.++...+++.+..+...+               +....++..+++.|.+....  ++
T Consensus       142 ~~~~~l~~~Ae~~g~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~~G~l~k~li  221 (380)
T d2gmha1         142 HLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHGHLAKQLY  221 (380)
T ss_dssp             HHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTCHHHHHHH
T ss_pred             HHHHHHHHHHhhccceeeeecceeeeeeccCCceeecccccccccccccccccccccccccccEEEEeeeCCCcchHHHH
Confidence            34455666677788888888888887765555554444321               12567888899998755332  22


Q ss_pred             hc-cccc---CCCcEEeCCCCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccC
Q 013952          268 KG-QVAE---NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE  332 (433)
Q Consensus       268 ~~-~~~~---~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~  332 (433)
                      .. .+..   ..+++.  .--+...+++..+||+++.-++..+     +-+..|+..|+.||+.+....
T Consensus       222 ~~~~l~~~~~~~~G~~--sip~l~~~G~lLVGDAAG~vnP~~g-----~GI~~Am~SG~lAAeai~~al  283 (380)
T d2gmha1         222 KKFDLRANCEPQGGFQ--SIPKLTFPGGLLIGCSPGFMNVPKI-----KGTHTAMKSGTLAAESIFNQL  283 (380)
T ss_dssp             HHTTTTTTSCCCCGGG--GCCCCEETTEEECTTTTCCCBTTTT-----BCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhccccccccccc--cccccccCCeeEEeccccccchhhc-----CCeeeeeccHHHHHHHHHHHH
Confidence            11 1111   111110  0012346899999999998776555     567889999999999887554

>d1v59a3 d.87.1.1 (A:356-478) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.95  E-value=2.8e-10  Score=86.61  Aligned_cols=88  Identities=17%  Similarity=0.260  Sum_probs=64.1

Q ss_pred             CCCCCeEEEeecccceEEecCCC------CcEEEEcCCCcc--------ccCCcEEEEEE--eCCEEEEEEEecCChHHH
Q 013952          340 YDYLPYFYSRAFDLSWQFYGDNV------GDTVLFGDNDLA--------SATHKFGTYWI--KDGKVVGVFLESGTPEEN  403 (433)
Q Consensus       340 ~~~~p~~~~~~~~~~~~~~g~~~------~~~~~~~~~~~~--------~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~  403 (433)
                      |+.+|+++++.|+++.+  |+++      +..+..+..+..        ....+|.|+++  ++++|||++++|++++|+
T Consensus         1 Y~~iP~~vft~PeiA~V--Glte~eA~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~d~~~~~ilGa~ivG~~A~el   78 (123)
T d1v59a3           1 YNNIPSVMYSHPEVAWV--GKTEEQLKEAGIDYKIGKFPFAANSRAKTNQDTEGFVKILIDSKTERILGAHIIGPNAGEM   78 (123)
T ss_dssp             TTSCCEEECSSSEEEEE--ECCHHHHHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHH
T ss_pred             CCCCCEEeecCCccEEE--ECCHHHHHhcccCceEEEEecccccchhccCCCcEEEEEEEECCCCEEEEEEEEchHHHHH
Confidence            67799999888887766  6654      222333222221        34678999887  579999999999999996


Q ss_pred             -HHHHHHHHcCCCCCChhhhcccCCCc
Q 013952          404 -KAIAKVARVQPSVESLDVLKNEGLSF  429 (433)
Q Consensus       404 -~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (433)
                       +.++.+|++++|++|+..+.-+-+++
T Consensus        79 I~~~alai~~~~t~~~l~~~i~~hPT~  105 (123)
T d1v59a3          79 IAEAGLALEYGASAEDVARVCHAHPTL  105 (123)
T ss_dssp             HHHHHHHHHTTCBHHHHHTSCCCTTCT
T ss_pred             HHHHHHHHHcCCcHHHHHhcccCCCcH
Confidence             99999999999999666554444443

>d3grsa3 d.87.1.1 (A:364-478) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=4.3e-10  Score=84.42  Aligned_cols=90  Identities=16%  Similarity=0.093  Sum_probs=65.9

Q ss_pred             CCCCCeEEEeecccceEEecCCCC--------cEEEEcCC-----Ccc---ccCCcEEEEEE--eCCEEEEEEEecCChH
Q 013952          340 YDYLPYFYSRAFDLSWQFYGDNVG--------DTVLFGDN-----DLA---SATHKFGTYWI--KDGKVVGVFLESGTPE  401 (433)
Q Consensus       340 ~~~~p~~~~~~~~~~~~~~g~~~~--------~~~~~~~~-----~~~---~~~~~~~~~~~--~~~~l~G~~~~g~~~~  401 (433)
                      |+.+|+++++.|+++.+  |.++.        +.+.....     .+.   ..+.+|+|+++  ++++|+|+|++|++|+
T Consensus         1 Y~~vP~~vft~PeiA~V--GltE~eA~~~~~~~~v~~~~~~~~~~~~a~~~~~~~g~~k~i~~~~~~~ilG~~ivG~~A~   78 (115)
T d3grsa3           1 YNNIPTVVFSHPPIGTV--GLTEDEAIHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVCANKEEKVVGIHMQGLGCD   78 (115)
T ss_dssp             CTTCCEEECCSSCEEEE--ECCHHHHHHHHCGGGEEEEEEEECCGGGGGCSSCCCEEEEEEEETTTTEEEEEEEESTTHH
T ss_pred             CCCCCEEecCcCccEEE--ecCcHHHHHHhCCcccceeEeeeeecchhhcccccceeEEEEEecCCceEEEEEEeccCHH
Confidence            56799999988888777  65541        21222111     111   34568898887  5899999999999999


Q ss_pred             HH-HHHHHHHHcCCCCCChhhhcccCCCccc
Q 013952          402 EN-KAIAKVARVQPSVESLDVLKNEGLSFAS  431 (433)
Q Consensus       402 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (433)
                      |+ +.++.+|++++|++|+..+.-+-+++++
T Consensus        79 ElI~~~~~ai~~~~t~~~l~~~i~~hPT~sE  109 (115)
T d3grsa3          79 EMLQGFAVAVKMGATKADFDNTVAIHPTSSE  109 (115)
T ss_dssp             HHHHHHHHHHHTTCBHHHHHTSCCCSSCSGG
T ss_pred             HHHHHHHHHHHcCCCHHHHhhCccCCCCHHH
Confidence            96 9999999999999977776665555554

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.95  E-value=2e-09  Score=82.02  Aligned_cols=93  Identities=20%  Similarity=0.218  Sum_probs=70.5

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      ..+++|||||+.|+-+|..|++.|.+   |+++++...++.+.      +.               ......+.+++++.
T Consensus        30 ~k~vvViGgG~iG~E~A~~l~~~g~~---Vtlie~~~~~l~~~------~d---------------~~~~~~~~~~l~~~   85 (123)
T d1nhpa2          30 VNNVVVIGSGYIGIEAAEAFAKAGKK---VTVIDILDRPLGVY------LD---------------KEFTDVLTEEMEAN   85 (123)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSSTTTTT------CC---------------HHHHHHHHHHHHTT
T ss_pred             CCEEEEECChHHHHHHHHHhhccceE---EEEEEecCcccccc------cc---------------hhhHHHHHHHhhcC
Confidence            46899999999999999999999987   99999982221110      00               00123456778889


Q ss_pred             CcEEEeCceEEEEECCCC-EEEeCCCcEEecceEEEcc
Q 013952           85 GIELILSTEIVRADIASK-TLLSATGLIFKYQILVIAT  121 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~-~v~~~~~~~~~~d~lvlAt  121 (433)
                      |++++.++.+..+..+++ ...+.+++++++|.+++|.
T Consensus        86 gv~~~~~~~v~~i~~~~~~~~v~~dg~~i~~D~vi~aI  123 (123)
T d1nhpa2          86 NITIATGETVERYEGDGRVQKVVTDKNAYDADLVVVAV  123 (123)
T ss_dssp             TEEEEESCCEEEEECSSBCCEEEESSCEEECSEEEECS
T ss_pred             CeEEEeCceEEEEEcCCCEEEEEeCCCEEECCEEEEEC
Confidence            999999999999987654 3446788899999999873

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.95  E-value=9.1e-10  Score=84.00  Aligned_cols=89  Identities=18%  Similarity=0.304  Sum_probs=68.3

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhCC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKG   85 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (433)
                      .+++|||||+.|+-+|..|++.|.+   |+|+++......   +.         .           .....+.+.+++.|
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~g~~---Vtlv~~~~~l~~---~d---------~-----------~~~~~~~~~l~~~G   86 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEAGYH---VKLIHRGAMFLG---LD---------E-----------ELSNMIKDMLEETG   86 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCE---EEEECSSSCCTT---CC---------H-----------HHHHHHHHHHHHTT
T ss_pred             CcEEEECCcHHHHHHHHHhhcccce---EEEEeccccccC---CC---------H-----------HHHHHHHHHHHHCC
Confidence            6899999999999999999999987   999998811110   00         0           01234567788899


Q ss_pred             cEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCC
Q 013952           86 IELILSTEIVRADIASKTLLSATGLIFKYQILVIATGS  123 (433)
Q Consensus        86 v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~  123 (433)
                      ++++.++.+..++.+  .+ +.+++.+++|.+|+|+|.
T Consensus        87 V~~~~~~~v~~~~~~--~v-~~~~~~i~~D~vi~a~Gv  121 (122)
T d1xhca2          87 VKFFLNSELLEANEE--GV-LTNSGFIEGKVKICAIGI  121 (122)
T ss_dssp             EEEECSCCEEEECSS--EE-EETTEEEECSCEEEECCE
T ss_pred             cEEEeCCEEEEEeCC--EE-EeCCCEEECCEEEEEEEe
Confidence            999999999888643  33 457778999999999994

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=98.94  E-value=5.4e-09  Score=84.70  Aligned_cols=89  Identities=13%  Similarity=0.135  Sum_probs=71.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC----------CCCCHHHHHHHHHHHHhcCcEEEcCCeEEEE
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP----------RLFTADIAAFYEGYYANKGIKIIKGTVAVGF  230 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~----------~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i  230 (433)
                      .+|+|+|||+|+.|+++|..|+++|.+|+++++.+.+..          .....++.+++.+.+++.||++++++.|+. 
T Consensus        42 ~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~gV~i~l~~~Vt~-  120 (179)
T d1ps9a3          42 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVTA-  120 (179)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCCCS-
T ss_pred             CCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcCCeEEEeCCEEcc-
Confidence            589999999999999999999999999999998765421          112357788889999999999999987632 


Q ss_pred             EecCCCcEEEEEeCCCcEEECCEEEEcccCccChh
Q 013952          231 TTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS  265 (433)
Q Consensus       231 ~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~  265 (433)
                          +           ....+|.||+|+|..|+..
T Consensus       121 ----~-----------~~~~~d~vilAtG~~~~~~  140 (179)
T d1ps9a3         121 ----D-----------QLQAFDETILASGIPNRAL  140 (179)
T ss_dssp             ----S-----------SSCCSSEEEECCCEECCTT
T ss_pred             ----c-----------ccccceeEEEeecCCCccc
Confidence                1           1246899999999877653

>d1dxla3 d.87.1.1 (A:348-470) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.94  E-value=3.5e-10  Score=86.03  Aligned_cols=89  Identities=15%  Similarity=0.163  Sum_probs=65.4

Q ss_pred             CCCCCeEEEeecccceEEecCCC------CcEEEEcCCCcc--------ccCCcEEEEEE--eCCEEEEEEEecCChHHH
Q 013952          340 YDYLPYFYSRAFDLSWQFYGDNV------GDTVLFGDNDLA--------SATHKFGTYWI--KDGKVVGVFLESGTPEEN  403 (433)
Q Consensus       340 ~~~~p~~~~~~~~~~~~~~g~~~------~~~~~~~~~~~~--------~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~  403 (433)
                      |+.+|+++++.|+++.+  |+++      +..+..+..+..        ....+|.|+++  ++|+|+|+|++|++++|+
T Consensus         1 Y~~iP~~vft~PeiA~v--Glte~~A~~~g~~~~~~~~~~~~~~ra~~~~~~~G~~Klv~d~~~~~ilG~~ivG~~A~el   78 (123)
T d1dxla3           1 YDKVPGVVYTNPEVASV--GKTEEQVKETGVEYRVGKFPFMANSRAKAIDNAEGLVKIIAEKETDKILGVHIMAPNAGEL   78 (123)
T ss_dssp             TTSCCEEECSSSEEEEE--ECCHHHHHHTTCCEEEEEEEGGGCHHHHHHSCCCCEEEEEEETTTCBEEEEEEEETTHHHH
T ss_pred             CCCCCEEeecCCceEEE--ECCHHHHHHcCCCEEEEEEeccccchhhhcCCCcceEEEEEECCCCEEEEEEEehhhHHHH
Confidence            67789998888877766  6654      222333222211        35678999887  469999999999999996


Q ss_pred             -HHHHHHHHcCCCCCChhhhcccCCCcc
Q 013952          404 -KAIAKVARVQPSVESLDVLKNEGLSFA  430 (433)
Q Consensus       404 -~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (433)
                       +.++.+|++++|++||..+.-+-++++
T Consensus        79 I~~~~~ai~~~~t~~~l~~~i~~hPT~s  106 (123)
T d1dxla3          79 IHEAAIALQYDASSEDIARVCHAHPTMS  106 (123)
T ss_dssp             HHHHHHHHHTTCBHHHHHTSCCCSSCTT
T ss_pred             HHHHHHHHHcCCcHHHHhhCCCCCCCHH
Confidence             999999999999997776655544443

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.94  E-value=9.3e-11  Score=100.55  Aligned_cols=35  Identities=31%  Similarity=0.460  Sum_probs=33.0

Q ss_pred             CCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         3 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      +++|||+|||||||||+||.+|++.|++   |+|||+.
T Consensus         1 ~~kYDviIIGgGpAGl~aA~~aar~G~~---V~viE~~   35 (229)
T d3lada1           1 SQKFDVIVIGAGPGGYVAAIKSAQLGLK---TALIEKY   35 (229)
T ss_dssp             CCCCSEEEECCSHHHHHHHHHHHHHTCC---EEEEECC
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCe---EEEEecc
Confidence            4689999999999999999999999998   9999987

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.93  E-value=2.9e-09  Score=80.45  Aligned_cols=95  Identities=16%  Similarity=0.285  Sum_probs=71.9

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      ..+++|||||+.|+-+|..+.+.+.+..+|+++++.....                  +.+.    ......+.+.+++.
T Consensus        20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL------------------~~~d----~~~~~~l~~~l~~~   77 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMIL------------------RGFD----HTLREELTKQLTAN   77 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSS------------------TTSC----HHHHHHHHHHHHHT
T ss_pred             CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhh------------------cccc----hHHHHHHHHHHHhc
Confidence            4689999999999999999888776556799999881111                  0000    00123467778899


Q ss_pred             CcEEEeCceEEEEECCC---CEEEeCCCcEEecceEEEcc
Q 013952           85 GIELILSTEIVRADIAS---KTLLSATGLIFKYQILVIAT  121 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~---~~v~~~~~~~~~~d~lvlAt  121 (433)
                      |++++.++.+.+++...   ..+++++|+++++|.+++|.
T Consensus        78 GV~v~~~~~v~~ie~~~~~~~~v~~~~G~~i~~D~Vi~AI  117 (117)
T d1aoga2          78 GIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMAI  117 (117)
T ss_dssp             TCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECS
T ss_pred             CcEEEcCCEEEEEEEcCCCeEEEEECCCcEEEeCEEEEeC
Confidence            99999999999997533   35888999999999999983

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.93  E-value=6.2e-11  Score=102.48  Aligned_cols=192  Identities=14%  Similarity=0.109  Sum_probs=96.3

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCC----CCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhH
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVK----PGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEW   80 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~----~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (433)
                      .++|+|||||||||+||.+|+++|++    ..+|+|+|+..      .+.+ ++.....   |....  ..........+
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~------~~GG-~~~~gi~---p~~~~--~~~~~~~~~~~   69 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLP------TPWG-LVRSGVA---PDHPK--IKSISKQFEKT   69 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSS------SCST-HHHHTSC---TTCTG--GGGGHHHHHHH
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCC------CCCC-eeeeccC---ccccc--chhhhhhhhhh
Confidence            47999999999999999999999842    23599999982      2222 2211110   11000  00001223345


Q ss_pred             HHhCCcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCCCCCCCCCCE-EEecCHHHH---HHHHHH
Q 013952           81 YKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNI-FYLREIDDA---DKLVEA  156 (433)
Q Consensus        81 ~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v-~~~~~~~~~---~~~~~~  156 (433)
                      +...++++..++.+.      ..+..+ .....||++++|||+.+..+..++.+....... .........   ......
T Consensus        70 ~~~~g~~~~~~~~v~------~~~~~~-~~~~~~~~v~~atGa~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (239)
T d1lqta2          70 AEDPRFRFFGNVVVG------EHVQPG-ELSERYDAVIYAVGAQSRGVPTPGLPFDDQSGTIPNVGGRINGSPNEYVVGW  142 (239)
T ss_dssp             HTSTTEEEEESCCBT------TTBCHH-HHHHHSSEEEECCCCCEECCCCTTSCCBTTTTBCCEETTEETTCSSEEECTH
T ss_pred             hccCCceEEEEEEec------cccchh-hhhccccceeeecCCCccccccccccccccccchhhhhhhhcccccccccee
Confidence            566789998886541      111111 112479999999998776554322222110000 000000000   000000


Q ss_pred             HHhcCCCcEEEECCCHHHHHHHHHHHhC-CCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEc
Q 013952          157 IKAKKNGKAVVVGGGYIGLELSAALKIN-NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIK  223 (433)
Q Consensus       157 ~~~~~~~~v~ViG~G~~g~e~a~~l~~~-g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~  223 (433)
                      ..  +.++++|+|++..+++++..+... |..    ........  ......+...+.+.++++++..
T Consensus       143 ~~--~g~~~vv~g~g~~a~d~a~~~v~vig~g----~~~~~~~~--~~~~~~~~~~~~l~~~~v~~v~  202 (239)
T d1lqta2         143 IK--RGPTGVIGTNKKDAQDTVDTLIKNLGNA----KEGAECKS--FPEDHADQVADWLAARQPKLVT  202 (239)
T ss_dssp             HH--HCSCSCTTHHHHHHHHHHHHHHHHHHHH----HHTTCSCC--C--CHHHHHHHHHHHHCTTCEE
T ss_pred             ec--CCCEEEEeCCCchHHHHHHHHHhhccCC----cccccccc--ccccchhHHHHHHHhcCCCccC
Confidence            00  256778888899999988765431 110    00001111  2233344555666777776654

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=98.93  E-value=1.1e-08  Score=90.71  Aligned_cols=103  Identities=16%  Similarity=0.131  Sum_probs=83.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC----------------------------------CC--CCHHH
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP----------------------------------RL--FTADI  206 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~----------------------------------~~--~~~~~  206 (433)
                      -.|+|||+|++|+-+|..|.+.|.+|+++++.+.+..                                  ..  -.+++
T Consensus         8 ~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW~~n~ypg~~~d~~~~~~~~s~~~~~~~~~~~~~~~p~~~e~   87 (298)
T d1w4xa1           8 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPEI   87 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHHH
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCcccccccCCCCCceeccccccccccccccccCCCCCccccCccchH
Confidence            4789999999999999999999999999987643210                                  00  01367


Q ss_pred             HHHHHHHHHhcCc--EEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC--ccChh
Q 013952          207 AAFYEGYYANKGI--KIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG--RPLIS  265 (433)
Q Consensus       207 ~~~l~~~l~~~GV--~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~--~p~~~  265 (433)
                      .+.+++..++.++  .++++++|+++..+++.....|++.++.++.+|.+|+|+|.  .|...
T Consensus        88 ~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~~~i~atG~ls~~~~p  150 (298)
T d1w4xa1          88 LRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSDALTG  150 (298)
T ss_dssp             HHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCTTH
T ss_pred             HHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccccccccccceEEEeecccccccCC
Confidence            7888888899998  59999999999876666778999999999999999999994  45443

>d1gesa3 d.87.1.1 (A:336-450) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.92  E-value=6.2e-10  Score=83.52  Aligned_cols=90  Identities=13%  Similarity=0.045  Sum_probs=64.5

Q ss_pred             CCCCCeEEEeecccceEEecCCC--------CcEEEEcCCCcc--------ccCCcEEEEEE--eCCEEEEEEEecCChH
Q 013952          340 YDYLPYFYSRAFDLSWQFYGDNV--------GDTVLFGDNDLA--------SATHKFGTYWI--KDGKVVGVFLESGTPE  401 (433)
Q Consensus       340 ~~~~p~~~~~~~~~~~~~~g~~~--------~~~~~~~~~~~~--------~~~~~~~~~~~--~~~~l~G~~~~g~~~~  401 (433)
                      |+.+|++.++.|+++.+  |.++        +..+...+.+..        ....+|.|+++  ++++|||+|++|++++
T Consensus         1 Y~~vP~~vft~PeiA~V--Glte~eA~~~~~~~~v~~~~~~~~~~~~a~~~~~~~g~~k~v~~~~~~~IlGa~ivG~~A~   78 (115)
T d1gesa3           1 YSNIPTVVFSHPPIGTV--GLTEPQAREQYGDDQVKVYKSSFTAMYTAVTTHRQPCRMKLVCVGSEEKIVGIHGIGFGMD   78 (115)
T ss_dssp             CSSCCEEECCSSCEEEE--ECCHHHHHHHHCGGGEEEEEEEEECHHHHTSSSCCEEEEEEEEETTTTEEEEEEEESTTHH
T ss_pred             CCCCCeEecCCCccEEE--eCCHHHHHHHcCCcccceeeeecccccccceeccccceEEEEEecCCcEEEEEEEECCCHH
Confidence            67899999988888777  6553        222322221111        23457888877  5899999999999999


Q ss_pred             HH-HHHHHHHHcCCCCCChhhhcccCCCccc
Q 013952          402 EN-KAIAKVARVQPSVESLDVLKNEGLSFAS  431 (433)
Q Consensus       402 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (433)
                      |+ +.++.+|+++.|++|+..+.-+-+++++
T Consensus        79 ElI~~~~~ai~~~~t~~~l~~~i~~hPT~sE  109 (115)
T d1gesa3          79 EMLQGFAVALKMGATKKDFDNTVAIHPTAAE  109 (115)
T ss_dssp             HHHHHHHHHHHTTCBHHHHHTSCCCSSCSGG
T ss_pred             HHHHHHHHHHHcCCcHHHHhcCcccCCcHHH
Confidence            96 9999999999999966666555544443

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=3e-09  Score=82.80  Aligned_cols=94  Identities=17%  Similarity=0.213  Sum_probs=70.4

Q ss_pred             cCeEEEECCCHHHHHHHHHHHH----cCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhH
Q 013952            5 SFKYVILGGGVSAGYAAREFAK----QGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEW   80 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~----~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (433)
                      ..+++|||||+.|+-+|..|++    .|.+   |++++++..+..+.              ++.       .......+.
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~---Vt~i~~~~~~l~~~--------------~~~-------~~~~~~~~~   92 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGTE---VIQLFPEKGNMGKI--------------LPE-------YLSNWTMEK   92 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCE---EEEECSSSSTTTTT--------------SCH-------HHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCCE---EEEecccccCCccc--------------CCH-------HHHHHHHHH
Confidence            3589999999999999888854    4655   99999982211100              000       001345677


Q ss_pred             HHhCCcEEEeCceEEEEECCCC--EEEeCCCcEEecceEEEccC
Q 013952           81 YKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATG  122 (433)
Q Consensus        81 ~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG  122 (433)
                      +++.|++++.++.+..++.++.  .+++.+|+++.+|.+++|+|
T Consensus        93 l~~~GV~~~~~~~V~~i~~~~~~~~v~l~~G~~i~aD~Vi~A~G  136 (137)
T d1m6ia2          93 VRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVG  136 (137)
T ss_dssp             HHTTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCC
T ss_pred             HHhCCcEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEEeec
Confidence            8889999999999999987654  57888999999999999998

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.90  E-value=1.1e-08  Score=84.29  Aligned_cols=114  Identities=25%  Similarity=0.361  Sum_probs=79.7

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHh
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   83 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (433)
                      ..||||||||++|+.+|..|++.|.+ ..|+++++. ..++....+...+...    .....      ............
T Consensus         3 ~~~VvIIGgG~~G~e~A~~l~~~g~~-v~v~~~~~~~~~~~~~~~~~~~~~~~----~~~~~------~~~~~~~~~~~~   71 (185)
T d1q1ra1           3 NDNVVIVGTGLAGVEVAFGLRASGWE-GNIRLVGDATVIPHHLPPLSKAYLAG----KATAE------SLYLRTPDAYAA   71 (185)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCC-SEEEEECSCCSCCBCSGGGGTTTTTT----CSCSG------GGBSSCHHHHHH
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcCCc-eEEEEecCccccchhhhHHHHHHHHh----hhhhh------hhhhhhhhhhcc
Confidence            46999999999999999999999875 334555555 3333332222211111    11000      112344566677


Q ss_pred             CCcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccC
Q 013952           84 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLT  129 (433)
Q Consensus        84 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~  129 (433)
                      ....+..+..+..++.+...+...++.++.+|.+++++|..|..|.
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~i~~d~~i~~~G~~~~~~~  117 (185)
T d1q1ra1          72 QNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPLIPN  117 (185)
T ss_dssp             TTEEEECSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEEEEEC
T ss_pred             cceeeeccceeeeecccccEEEeeceeEEEeeeeeeeeecccCCCC
Confidence            8888888888889998888999999999999999999998876554

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.89  E-value=1.6e-10  Score=98.66  Aligned_cols=34  Identities=35%  Similarity=0.398  Sum_probs=32.4

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ++|||+||||||||++||.++++.|++   |+|||++
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~~G~k---V~vie~~   35 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQLGFK---TTCIEKR   35 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCC---EEEEECS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCc---EEEEEec
Confidence            579999999999999999999999998   9999987

>d3lada3 d.87.1.1 (A:349-472) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.88  E-value=5.9e-10  Score=84.93  Aligned_cols=87  Identities=21%  Similarity=0.214  Sum_probs=63.4

Q ss_pred             CCCCCeEEEeecccceEEecCCC------CcEEEEcCCCcc--------ccCCcEEEEEE--eCCEEEEEEEecCChHHH
Q 013952          340 YDYLPYFYSRAFDLSWQFYGDNV------GDTVLFGDNDLA--------SATHKFGTYWI--KDGKVVGVFLESGTPEEN  403 (433)
Q Consensus       340 ~~~~p~~~~~~~~~~~~~~g~~~------~~~~~~~~~~~~--------~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~  403 (433)
                      |+.+|+++++.|+++.+  |.++      +..+..+..+..        ....+|.|+++  ++|+|||+|++|++++|+
T Consensus         1 Y~~vP~~vft~PeiA~V--Glte~~a~~~g~~~~~~~~~~~~~~ra~~~~~~~G~vKlv~d~~t~~ILGa~ivg~~A~el   78 (124)
T d3lada3           1 YDLIPAVIYTHPEIAGV--GKTEQALKAEGVAINVGVFPFAASGRAMAANDTAGFVKVIADAKTDRVLGVHVIGPSAAEL   78 (124)
T ss_dssp             TTCCCEEECSSSEEEEE--ECCHHHHHHTTCCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTCBEEEEEEEETTHHHH
T ss_pred             CCcCCeEecCcCceeEe--ehhHHHHhhcccccEEEEEECccCcchhhcCCCCeEEEEEEECCCCEEEEEEEEcccHHHH
Confidence            67799999888887776  6553      222333322211        34678999887  579999999999999996


Q ss_pred             -HHHHHHHHcCCCCCChhhhcccCCC
Q 013952          404 -KAIAKVARVQPSVESLDVLKNEGLS  428 (433)
Q Consensus       404 -~~~~~~~~~~~~~~~~~~~~~~~~~  428 (433)
                       +.++.+|++++|++|+..+.-+-++
T Consensus        79 I~~~~~ai~~~~t~~~l~~~i~~hPT  104 (124)
T d3lada3          79 VQQGAIAMEFGTSAEDLGMMVFAHPA  104 (124)
T ss_dssp             HHHHHHHHHHTCBHHHHHTSCCCSSC
T ss_pred             HHHHHHHHHcCCCHHHHHhCCccCCC
Confidence             9999999999999966655443333

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.88  E-value=3.8e-10  Score=96.83  Aligned_cols=101  Identities=14%  Similarity=0.169  Sum_probs=59.5

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhCC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKG   85 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (433)
                      .+|+|||||||||+||.+|++++. ..+|+|+|+...++      +.+.........+..      ........++...+
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~-~~~V~v~e~~~~~g------G~~~~~~~~~~~~~~------~~~~~~~~~~~~~~   68 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHS-RAHVDIYEKQLVPF------GLVRFGVAPDHPEVK------NVINTFTQTARSDR   68 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCS-SCEEEEECSSSSSC------THHHHTSCTTCGGGG------GHHHHHHHHHTSTT
T ss_pred             CeEEEECccHHHHHHHHHHHhcCC-CCeEEEEeCCCCCC------ceehhhccccccccc------cchhhhhhhhhcCC
Confidence            589999999999999999998753 34599999993222      111111000000000      00122345566788


Q ss_pred             cEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCcc
Q 013952           86 IELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVL  126 (433)
Q Consensus        86 v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~  126 (433)
                      +++..++.+.      +.+...+ ..-.||.+++|||+.+.
T Consensus        69 ~~~~~~~~v~------~~~~~~~-l~~~~d~v~~a~Ga~~~  102 (230)
T d1cjca2          69 CAFYGNVEVG------RDVTVQE-LQDAYHAVVLSYGAEDK  102 (230)
T ss_dssp             EEEEBSCCBT------TTBCHHH-HHHHSSEEEECCCCCEE
T ss_pred             eeEEeeEEeC------ccccHHH-HHhhhceEEEEeecccc
Confidence            8988876541      1111100 01268999999999754

>d1ojta3 d.87.1.1 (A:471-598) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.88  E-value=9.6e-10  Score=84.04  Aligned_cols=89  Identities=8%  Similarity=0.154  Sum_probs=65.4

Q ss_pred             CCCCeEEEeecccceEEecCCC------CcEEEEcCCCcc--------ccCCcEEEEEE--eCCEEEEEEEecCChHHH-
Q 013952          341 DYLPYFYSRAFDLSWQFYGDNV------GDTVLFGDNDLA--------SATHKFGTYWI--KDGKVVGVFLESGTPEEN-  403 (433)
Q Consensus       341 ~~~p~~~~~~~~~~~~~~g~~~------~~~~~~~~~~~~--------~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-  403 (433)
                      +.+|+++++.|+++.+  |+++      +..+.....+..        ..+.+|.|+++  ++|+|||+|++|++++|+ 
T Consensus         2 r~IP~~vft~PeiA~V--Glte~~A~~~g~~~~v~~~~~~~~~ra~~~~~~~g~~Kli~d~~~g~iLGa~ivG~~A~ElI   79 (128)
T d1ojta3           2 RVIPGVAYTSPEVAWV--GETELSAKASARKITKANFPWAASGRAIANGCDKPFTKLIFDAETGRIIGGGIVGPNGGDMI   79 (128)
T ss_dssp             CCCCEEECSSSCEEEE--ECCHHHHHHHTCCEEEEEEEGGGCHHHHHTTCCSCEEEEEEETTTCBEEEEEEESTTHHHHH
T ss_pred             CcCCEeecCCCceeee--eccHHHHHHcCCCcccceeeccchhhHHhcCCccceEEEEEeCCCCeEEEEEEEhhhHHHHH
Confidence            3589999888887777  6654      223333322221        35678999887  579999999999999996 


Q ss_pred             HHHHHHHHcCCCCCChhhhcccCCCccc
Q 013952          404 KAIAKVARVQPSVESLDVLKNEGLSFAS  431 (433)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (433)
                      +.++.+|++++|++|+..+.-+-+++++
T Consensus        80 ~~~~lai~~~~t~~~l~~~i~~hPT~sE  107 (128)
T d1ojta3          80 GEVCLAIEMGCDAADIGKTIHPHPTLGE  107 (128)
T ss_dssp             HHHHHHHHTTCBHHHHHTSCCCSSSSTT
T ss_pred             HHHHHHHHcCCCHHHHhhCcCcCCCHHH
Confidence            9999999999999977766665555543

>d1feca3 d.87.1.1 (A:358-485) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.87  E-value=1.9e-09  Score=82.33  Aligned_cols=90  Identities=12%  Similarity=0.043  Sum_probs=64.6

Q ss_pred             CCCCCeEEEeecccceEEecCCC------CcEEEEcCCCc-----c----ccCCcEEEEEE--eCCEEEEEEEecCChHH
Q 013952          340 YDYLPYFYSRAFDLSWQFYGDNV------GDTVLFGDNDL-----A----SATHKFGTYWI--KDGKVVGVFLESGTPEE  402 (433)
Q Consensus       340 ~~~~p~~~~~~~~~~~~~~g~~~------~~~~~~~~~~~-----~----~~~~~~~~~~~--~~~~l~G~~~~g~~~~~  402 (433)
                      |..+|+.+++.|+++.+  |.++      +..+..+..+.     .    ....+++|+++  ++|+|||+|++|++++|
T Consensus         1 y~~VP~aVfT~PeiA~V--Glte~eA~~~g~~~~v~~~~~~~~~~a~~~~~~~~~~~klv~~~~~g~iLGa~ivG~~A~E   78 (128)
T d1feca3           1 HTKVACAVFSIPPMGVC--GYVEEDAAKKYDQVAVYESSFTPLMHNISGSTYKKFMVRIVTNHADGEVLGVHMLGDSSPE   78 (128)
T ss_dssp             CSSCCEEECCSSCEEEE--ECCHHHHHHHCSEEEEEEEEECCHHHHHHSCTTCCEEEEEEEETTTTEEEEEEEESTTHHH
T ss_pred             CCCCCEEecCCCcceEE--ECCHHHHhhhhcCcceeecccchHHHHHhccccccceEEEeecCCCCceeEEEEECCCHHH
Confidence            56789999988888877  6654      22222222111     1    23345777776  68999999999999999


Q ss_pred             H-HHHHHHHHcCCCCCChhhhcccCCCccc
Q 013952          403 N-KAIAKVARVQPSVESLDVLKNEGLSFAS  431 (433)
Q Consensus       403 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (433)
                      + +.++.+|++++|++|+..+.-+-+++++
T Consensus        79 lI~~~~~ai~~~~t~~~l~~~i~~hPT~sE  108 (128)
T d1feca3          79 IIQSVAICLKMGAKISDFYNTIGVHPTSAE  108 (128)
T ss_dssp             HHHHHHHHHHTTCBHHHHHTSCCCSSCSGG
T ss_pred             HHHHHHHHHHcCCcHHHHhcCcCCCCcHHH
Confidence            6 9999999999999977666555555554

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.86  E-value=4.7e-09  Score=79.04  Aligned_cols=92  Identities=17%  Similarity=0.230  Sum_probs=69.1

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      ..+++|||||+.|+-+|..|++.|.+   |+|+++.....                  +.+.    ......+.+.+++.
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~---Vtlv~~~~~il------------------~~~d----~~~~~~~~~~l~~~   76 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGID---SYIFARGNRIL------------------RKFD----ESVINVLENDMKKN   76 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCE---EEEECSSSSSC------------------TTSC----HHHHHHHHHHHHHT
T ss_pred             CCEEEEECCchHHHHHHHHHHhcccc---ceeeehhcccc------------------cccc----HHHHHHHHHHHHhC
Confidence            46899999999999999999999887   99999881111                  0000    00123456778889


Q ss_pred             CcEEEeCceEEEEECCC---CEEEeCCCcEE-ecceEEEcc
Q 013952           85 GIELILSTEIVRADIAS---KTLLSATGLIF-KYQILVIAT  121 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~---~~v~~~~~~~~-~~d~lvlAt  121 (433)
                      |++++.++.+..+....   .++.+++|+++ .+|.+++|.
T Consensus        77 gV~i~~~~~v~~i~~~~~~~~~v~~~~G~~~~~~D~Vi~AI  117 (117)
T d1onfa2          77 NINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCV  117 (117)
T ss_dssp             TCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECC
T ss_pred             CCEEEECCEEEEEEEcCCCeEEEEECCCCEEEeCCEEEEeC
Confidence            99999999999997433   25778899877 579999883

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=98.85  E-value=1.7e-08  Score=90.16  Aligned_cols=91  Identities=23%  Similarity=0.396  Sum_probs=65.6

Q ss_pred             HHHHHHHhcCcEEEcCCeEEEEEecCC------CcEEEEEe---CCC--cEEECCEEEEcccCccCh-------h-----
Q 013952          209 FYEGYYANKGIKIIKGTVAVGFTTNAD------GEVKEVKL---KDG--RTLEADIVVVGVGGRPLI-------S-----  265 (433)
Q Consensus       209 ~l~~~l~~~GV~v~~~~~v~~i~~~~~------g~~~~v~~---~~g--~~i~~d~vi~a~G~~p~~-------~-----  265 (433)
                      .+.+.+++.+++++.++.+.++..+++      +++..+..   .++  ..+.++.||+|+|-....       .     
T Consensus       143 ~~~~~~~~~~v~~~~~~~~~~Li~~~~~~~~~~~rv~Gv~~~~~~~g~~~~~~ak~VilAtGG~~~~~~~~t~~~~~TGD  222 (305)
T d1chua2         143 LVSKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGASKVYQYTTNPDISSGD  222 (305)
T ss_dssp             CHHHHHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCGGGSSSBSCGGGCSCH
T ss_pred             HHHHHHhccCcceeceeEEEEEEEEcCcccccCceEEEEEEEeCCCCcEEEEeecceEEeeeccccceeccCCCCceecc
Confidence            345667888999999999999876332      25666655   234  247899999999942211       0     


Q ss_pred             ---h-hhccccc-CCCcEEeCCCCCCCCCCeEEcCcccc
Q 013952          266 ---L-FKGQVAE-NKGGIETDDFFKTSADDVYAVGDVAT  299 (433)
Q Consensus       266 ---~-~~~~~~~-~~g~i~vd~~~~t~~~~vfa~Gd~~~  299 (433)
                         + .+.+..+ +-++|.+|++.+|+.|++||+|+++.
T Consensus       223 G~~mA~~aGa~l~~m~~iq~~~~g~t~~~g~~a~G~~~~  261 (305)
T d1chua2         223 GIAMAWRAGCRVANCGGVMVDDHGRTDVEGLYAIGEVSY  261 (305)
T ss_dssp             HHHHHHHTTCCEECSCEEECCTTCBCSSBTEEECGGGEE
T ss_pred             cEeeccccceeeEecceeEECCcccCCCCCceecccEEE
Confidence               1 1345555 66889999999999999999999754

>d1onfa3 d.87.1.1 (A:377-495) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.84  E-value=2e-09  Score=81.31  Aligned_cols=90  Identities=11%  Similarity=0.055  Sum_probs=63.7

Q ss_pred             CCCCCeEEEeecccceEEecCCCC----------cEEEE---cCCCc-------cccCCcEEEEEE--eCCEEEEEEEec
Q 013952          340 YDYLPYFYSRAFDLSWQFYGDNVG----------DTVLF---GDNDL-------ASATHKFGTYWI--KDGKVVGVFLES  397 (433)
Q Consensus       340 ~~~~p~~~~~~~~~~~~~~g~~~~----------~~~~~---~~~~~-------~~~~~~~~~~~~--~~~~l~G~~~~g  397 (433)
                      |+.+|+++++.|+++.+  |+++.          ..+..   .....       .....+|.|+++  ++++|||+|++|
T Consensus         1 Y~~vP~~vfT~PeiA~V--Glte~~A~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~IlGa~ivG   78 (119)
T d1onfa3           1 YKLIPTVIFSHPPIGTI--GLSEEAAIQIYGKENVKIYESKFTNLFFSVYDIEPELKEKTYLKLVCVGKDELIKGLHIIG   78 (119)
T ss_dssp             CSSCCEEECCSSCEEEE--ECCHHHHHHHTCGGGEEEEEEEECCGGGTTSCSCGGGSCCEEEEEEEETTTTEEEEEEEES
T ss_pred             CCcCCeEeccCCccEEE--ECCHHHHHHhcccccccccccccCccccchhhhhhccCCCceEEEEEecCCCcEEEEEEeC
Confidence            67899999998988877  65531          11111   11110       023457887776  789999999999


Q ss_pred             CChHHH-HHHHHHHHcCCCCCChhhhcccCCCccc
Q 013952          398 GTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFAS  431 (433)
Q Consensus       398 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (433)
                      ++++|+ +.++.+|++++|++|+..+.-+-+++++
T Consensus        79 ~~A~ElI~~~~~ai~~~~t~~~l~~~i~~hPT~sE  113 (119)
T d1onfa3          79 LNADEIVQGFAVALKMNATKKDFDETIPIHPTAAE  113 (119)
T ss_dssp             TTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTCSTT
T ss_pred             CCHHHHHHHHHHHHHcCCcHHHHhhCcccCCCHHH
Confidence            999996 9999999999999976666555555443

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.84  E-value=3.8e-09  Score=90.70  Aligned_cols=34  Identities=32%  Similarity=0.438  Sum_probs=32.1

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      -.|||+||||||||++||.++++.|++   |+|||+.
T Consensus         2 ~dYDviVIG~GpaGl~aA~~aa~~G~k---V~viE~~   35 (235)
T d1h6va1           2 YDFDLIIIGGGSGGLAAAKEAAKFDKK---VMVLDFV   35 (235)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHGGGCCC---EEEECCC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCe---EEEEecc
Confidence            369999999999999999999999998   9999987

>d1xdia2 d.87.1.1 (A:349-466) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.81  E-value=1.1e-09  Score=82.39  Aligned_cols=88  Identities=15%  Similarity=0.015  Sum_probs=63.2

Q ss_pred             CCCCeEEEeecccceEEecCCC------CcEEEEcCCCcc--------ccCCcEEEEEE--eCCEEEEEEEecCChHHH-
Q 013952          341 DYLPYFYSRAFDLSWQFYGDNV------GDTVLFGDNDLA--------SATHKFGTYWI--KDGKVVGVFLESGTPEEN-  403 (433)
Q Consensus       341 ~~~p~~~~~~~~~~~~~~g~~~------~~~~~~~~~~~~--------~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-  403 (433)
                      +.+|+.+++.|+++.+  |+++      +..+..+..+..        ....+|.|+++  ++|+|+|+|++|++++|+ 
T Consensus         2 r~iP~~vft~PeiA~v--Glte~~a~~~g~~~~~~~~~~~~~~ra~~~~~~~G~vKlv~d~~~~~ilGa~ivG~~A~elI   79 (118)
T d1xdia2           2 RTVAATVFTRPEIAAV--GVPQSVIDAGSVAARTIMLPLRTNARAKMSEMRHGFVKIFCRRSTGVVIGGVVVAPIASELI   79 (118)
T ss_dssp             GGCEEEECSSSEEEEE--ESCHHHHHHTSSCEEEEEEESTTSHHHHHTTCSSCEEEEEEETTTCBEEEEEEEETTHHHHH
T ss_pred             CCCCEEecCCChheee--hhhHHHHHhCcccceeeeecccchhhhhhcccchhheEEEEecCCCceEEEEEEcCcHHHHH
Confidence            3578888888877766  6553      333333322211        34678999888  468999999999999996 


Q ss_pred             HHHHHHHHcCCCCCChhhhcccCCCcc
Q 013952          404 KAIAKVARVQPSVESLDVLKNEGLSFA  430 (433)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (433)
                      +.++.+|++++|++|+..+.-+-++++
T Consensus        80 ~~~~~ai~~~~t~~~l~~~i~~hPT~s  106 (118)
T d1xdia2          80 LPIAVAVQNRITVNELAQTLAVYPSLS  106 (118)
T ss_dssp             HHHHHHHHHTCBHHHHHTSBCCSSSTH
T ss_pred             HHHHHHHHcCCCHHHHhhCCCCCCCHH
Confidence            999999999999997766554444443

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.81  E-value=4.4e-09  Score=80.13  Aligned_cols=92  Identities=14%  Similarity=0.202  Sum_probs=68.1

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhCC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKG   85 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (433)
                      .+++|||||+.|+-.|..|++.|.+   |+++++.....                  +.+..    .......+.+++.+
T Consensus        23 ~~vvVvGgG~ig~E~A~~l~~~g~~---vt~i~~~~~~l------------------~~~d~----~~~~~~~~~l~~~g   77 (121)
T d1mo9a2          23 STVVVVGGSKTAVEYGCFFNATGRR---TVMLVRTEPLK------------------LIKDN----ETRAYVLDRMKEQG   77 (121)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSCTTT------------------TCCSH----HHHHHHHHHHHHTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhcchh---heEeeccchhh------------------ccccc----chhhhhhhhhhccc
Confidence            6899999999999999999999876   99999881111                  00000    00234567788899


Q ss_pred             cEEEeCceEEEEECCCC--E--E---EeCCCcEEecceEEEccC
Q 013952           86 IELILSTEIVRADIASK--T--L---LSATGLIFKYQILVIATG  122 (433)
Q Consensus        86 v~~~~~~~v~~i~~~~~--~--v---~~~~~~~~~~d~lvlAtG  122 (433)
                      ++++.++.+..+...+.  .  +   ...+++++++|.+++|+|
T Consensus        78 I~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2          78 MEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG  121 (121)
T ss_dssp             CEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred             cEEEcCCEEEEEEecCCceEEEEEEEeCCCCEEEEcCEEEEEEC
Confidence            99999999999986542  1  1   123456799999999998

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.80  E-value=5.8e-09  Score=92.02  Aligned_cols=105  Identities=17%  Similarity=0.130  Sum_probs=69.7

Q ss_pred             CcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh---hcccc------c-CCCcEEeC----CC
Q 013952          218 GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVA------E-NKGGIETD----DF  283 (433)
Q Consensus       218 GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~---~~~~~------~-~~g~i~vd----~~  283 (433)
                      +..++.++.+..+..  ++....|.+.+|+.+++|.++++.+........   ...+.      . ..+...++    +.
T Consensus       224 ~~~i~~~~~v~~i~~--~~~~v~v~~~~g~~~~~d~~~~~~~~~~l~~~~~~~~p~l~~~~~~ai~~~~~~~~~~~~~~~  301 (347)
T d1b5qa1         224 DPRLQLNKVVREIKY--SPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFWPVGVNRYEYDQ  301 (347)
T ss_dssp             CTTEESSCCEEEEEE--CSSCEEEEETTSCEEEESEEEECSCHHHHHTTSSEEESCCCHHHHHHHHHSCBTTCCHHHHHH
T ss_pred             ccccccccccccccc--cCccEEEEECCCCEEEcCEEEeecCHHHHhhcccccCCCCCHHHHHHHHhcCCccccccchhh
Confidence            567889999999987  333356889999999999999987632211100   00000      0 11222222    34


Q ss_pred             CCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccC
Q 013952          284 FKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE  332 (433)
Q Consensus       284 ~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~  332 (433)
                      ++++.++||++||++....+        ..+..|..+|+.+|+.|++..
T Consensus       302 ~~~~~~~v~~~GD~~~~~~~--------~~~~gA~~sG~~aA~~l~~~~  342 (347)
T d1b5qa1         302 LRAPVGRVYFTGEHTSEHYN--------GYVHGAYLSGIDSAEILINCA  342 (347)
T ss_dssp             HHCCBTTEEECSGGGCSSCT--------TSHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccCCEEEEEccccCcCC--------CHHHHHHHHHHHHHHHHHHHH
Confidence            57888999999999875543        456678889999999887653

>d1ebda3 d.87.1.1 (A:347-461) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.79  E-value=2.4e-09  Score=80.19  Aligned_cols=85  Identities=13%  Similarity=0.146  Sum_probs=61.7

Q ss_pred             CCeEEEeecccceEEecCCC------CcEEEEcCCCcc--------ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HH
Q 013952          343 LPYFYSRAFDLSWQFYGDNV------GDTVLFGDNDLA--------SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KA  405 (433)
Q Consensus       343 ~p~~~~~~~~~~~~~~g~~~------~~~~~~~~~~~~--------~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~  405 (433)
                      +|+++++.|+++.+  |+++      +..+..+..+..        ....+|.|+++  ++++|||+|++|++++|+ +.
T Consensus         2 vP~~vft~PeiA~V--Glte~ea~~~g~~~~v~~~~~~~~~ra~~~~~~~G~vKli~~~~~~~iLG~~ivg~~A~elI~~   79 (115)
T d1ebda3           2 IPAVVFSDPECASV--GYFEQQAKDEGIDVIAAKFPFAANGRALALNDTDGFLKLVVRKEDGVIIGAQIIGPNASDMIAE   79 (115)
T ss_dssp             CCEEECSSSCEEEE--ECCHHHHHTTTCCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTTEEEEEEEESTTHHHHHHH
T ss_pred             cCeEecCCCceEEE--eCCHHHHhhhhhhhhccceecccceeeeecCCCcEEEEEEEeCCcceEEEEEEEcCCHHHHHHH
Confidence            68888888877766  6554      322333322221        34678999887  479999999999999996 99


Q ss_pred             HHHHHHcCCCCCChhhhcccCCCc
Q 013952          406 IAKVARVQPSVESLDVLKNEGLSF  429 (433)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~  429 (433)
                      ++.+|++++|++|+..+.-+-+++
T Consensus        80 ~~~ai~~~~t~~~l~~~i~~hPT~  103 (115)
T d1ebda3          80 LGLAIEAGMTAEDIALTIHAHPTL  103 (115)
T ss_dssp             HHHHHHHTCBHHHHHHSCCCTTSS
T ss_pred             HHHHHHcCCCHHHHhhCCCCCCCH
Confidence            999999999999666655544444

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.77  E-value=1e-08  Score=77.36  Aligned_cols=91  Identities=19%  Similarity=0.298  Sum_probs=66.8

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      ..+++|||||+.|+-+|..+++.|.+   |+|+++.....                  +.+.    ......+.+.+++.
T Consensus        22 p~~v~IiGgG~ig~E~A~~l~~~G~~---Vtlve~~~~il------------------~~~d----~~~~~~l~~~l~~~   76 (117)
T d1ebda2          22 PKSLVVIGGGYIGIELGTAYANFGTK---VTILEGAGEIL------------------SGFE----KQMAAIIKKRLKKK   76 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSSSS------------------TTSC----HHHHHHHHHHHHHT
T ss_pred             CCeEEEECCCccceeeeeeecccccE---EEEEEecceec------------------cccc----chhHHHHHHHHHhc
Confidence            46899999999999999999999987   99999881111                  0000    00123456778889


Q ss_pred             CcEEEeCceEEEEECCCCE--EEe-CCC--cEEecceEEEc
Q 013952           85 GIELILSTEIVRADIASKT--LLS-ATG--LIFKYQILVIA  120 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~~--v~~-~~~--~~~~~d~lvlA  120 (433)
                      |++++.++.+.+++..+..  +.+ .++  +++++|.+++.
T Consensus        77 GI~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~~D~Vlvs  117 (117)
T d1ebda2          77 GVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVT  117 (117)
T ss_dssp             TCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEEC
T ss_pred             CCEEEcCCEEEEEEEcCCEEEEEEEeCCCEEEEEeEEEEEC
Confidence            9999999999999765543  333 333  56899999974

>d1lvla3 d.87.1.1 (A:336-458) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.77  E-value=2.3e-09  Score=81.27  Aligned_cols=88  Identities=10%  Similarity=0.043  Sum_probs=63.3

Q ss_pred             CCCCeEEEeecccceEEecCCC------CcEEEEcCCCcc--------ccCCcEEEEEE--eCCEEEEEEEecCChHHH-
Q 013952          341 DYLPYFYSRAFDLSWQFYGDNV------GDTVLFGDNDLA--------SATHKFGTYWI--KDGKVVGVFLESGTPEEN-  403 (433)
Q Consensus       341 ~~~p~~~~~~~~~~~~~~g~~~------~~~~~~~~~~~~--------~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-  403 (433)
                      ..+|++.++.|+++.+  |+++      +..+..+..+..        ....+|.|+++  ++|+|||++++|++++|+ 
T Consensus         2 ~~iP~vvft~PeiA~V--Glte~eA~~~g~~~~v~~~~~~~~~ra~~~~~~~g~vklv~d~~t~~ILG~~ivG~~A~elI   79 (123)
T d1lvla3           2 AAIAAVCFTDPEVVVV--GKTPEQASQQGLDCIVAQFPFAANGRAMSLESKSGFVRVVARRDNHLILGWQAVGVAVSELS   79 (123)
T ss_dssp             SCCCEEECSSSEEEEE--ECCHHHHHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTGGGHH
T ss_pred             CCCCEEEeCCCccEEE--ECCHHHHhhcchhhhcceeeccccccceecCcchhheeeeeecccccceEEEEEeCchhhHH
Confidence            3588888888887766  6554      333333333221        34568888887  479999999999999996 


Q ss_pred             HHHHHHHHcCCCCCChhhhcccCCCcc
Q 013952          404 KAIAKVARVQPSVESLDVLKNEGLSFA  430 (433)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (433)
                      +.++.+|++++|++|+..+.-+-++++
T Consensus        80 ~~~~lai~~~~t~~~l~~~i~~hPT~s  106 (123)
T d1lvla3          80 TAFAQSLEMGACLEDVAGTIHAHPTLG  106 (123)
T ss_dssp             HHHHHHHHHTCBHHHHHTSCCCTTCTT
T ss_pred             HHHHHHHHcCCCHHHHhcCCCCCCCHH
Confidence            999999999999996666544444443

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.76  E-value=8.9e-09  Score=78.40  Aligned_cols=93  Identities=14%  Similarity=0.203  Sum_probs=69.1

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      ..+++|||||+.|+-.|..+++.|.+   |++++......                  +.+.    ......+.+.+++.
T Consensus        26 p~~vvIiGgG~IG~E~A~~~~~~G~~---Vtive~~~~il------------------~~~d----~~~~~~l~~~l~~~   80 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVYSTLGSR---LDVVEMMDGLM------------------QGAD----RDLVKVWQKQNEYR   80 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCE---EEEECSSSSSS------------------TTSC----HHHHHHHHHHHGGG
T ss_pred             CCeEEEECCCHHHHHHHHHhhcCCCE---EEEEEeecccc------------------ccch----hhHHHHHHHHHHHc
Confidence            46899999999999999999999987   99999981111                  0000    00123456778889


Q ss_pred             CcEEEeCceEEEEECCCC--EEEeC--CC--cEEecceEEEccC
Q 013952           85 GIELILSTEIVRADIASK--TLLSA--TG--LIFKYQILVIATG  122 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~--~v~~~--~~--~~~~~d~lvlAtG  122 (433)
                      |++++.++.+..+..++.  .+.+.  ++  +++++|.+++|+|
T Consensus        81 gv~~~~~~~v~~v~~~~~g~~v~~~~~~g~~~~i~~D~vl~A~G  124 (125)
T d1ojta2          81 FDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAG  124 (125)
T ss_dssp             EEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCC
T ss_pred             CcccccCcEEEEEEEcCCcEEEEEEeCCCCeEEEEcCEEEEecC
Confidence            999999999999876554  34443  22  4799999999998

>d1d7ya3 d.87.1.1 (A:309-405) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.76  E-value=6e-08  Score=69.81  Aligned_cols=86  Identities=21%  Similarity=0.331  Sum_probs=71.1

Q ss_pred             cCCCCCCeEEEeecccceEEecCCCCcE-EEE--cCCCccccCCcEEEEEEeCCEEEEEEEecCChHHHHHHHHHHHcCC
Q 013952          338 TGYDYLPYFYSRAFDLSWQFYGDNVGDT-VLF--GDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQP  414 (433)
Q Consensus       338 ~~~~~~p~~~~~~~~~~~~~~g~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~l~G~~~~g~~~~~~~~~~~~~~~~~  414 (433)
                      .+|..+|||||.+++..++.+|...+.. +..  +..+    ...|..++.++|+|+|+..++ .+.++..+..+|+.+.
T Consensus         3 ~~y~~vP~FWSdQ~d~~iq~~G~~~~~~~~v~~~~~~~----~~~f~~~y~~~g~lvgv~~vn-~~~~~~~~rrli~~~~   77 (97)
T d1d7ya3           3 PGYAELPWYWSDQGALRIQVAGLASGDEEIVRGEVSLD----APKFTLIELQKGRIVGATCVN-NARDFAPLRRLLAVGA   77 (97)
T ss_dssp             CCCCCCCEEEEEETTEEEEEEECSCCSEEEEEEECCSS----SCEEEEEEEETTEEEEEEEES-CHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCcEEeccCCCeeEEEecCCCCCEEEEeccCCC----CCeEEEEEEeCCEEEEEEEeC-CHHHHHHHHHHHHCCC
Confidence            5799999999999999999999887543 222  3333    467888899999999999997 6888999999999998


Q ss_pred             CCCChhhhcccCCCc
Q 013952          415 SVESLDVLKNEGLSF  429 (433)
Q Consensus       415 ~~~~~~~~~~~~~~~  429 (433)
                      ++ +.+.|.|+.++.
T Consensus        78 ~~-~~~~LaD~~~~L   91 (97)
T d1d7ya3          78 KP-DRAALADPATDL   91 (97)
T ss_dssp             CC-CHHHHHSSCCHH
T ss_pred             CC-CHHHhcCCCCCH
Confidence            88 688999888764

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.76  E-value=1.3e-08  Score=80.32  Aligned_cols=94  Identities=16%  Similarity=0.229  Sum_probs=67.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEE
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVK  239 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~-~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~  239 (433)
                      .+++|+|||||.+|+|+|..+.+.|. +|+++.+.+..... ...    .....+.+.+++++++..+.++.. .+++..
T Consensus        44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~~~~~-a~~----~~~~~a~~~~~~~~~~~~~~ei~~-~~~~~~  117 (153)
T d1gtea3          44 IRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIR-AVP----EEVELAKEEKCEFLPFLSPRKVIV-KGGRIV  117 (153)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGGGCC-SCH----HHHHHHHHTTCEEECSEEEEEEEE-ETTEEE
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCChhhhc-cch----hheeecccccceeEeccccEEEEe-cCCceE
Confidence            35799999999999999999999985 58899887654332 122    222345678899999998888876 345444


Q ss_pred             EEEe------CCC---------cEEECCEEEEcccC
Q 013952          240 EVKL------KDG---------RTLEADIVVVGVGG  260 (433)
Q Consensus       240 ~v~~------~~g---------~~i~~d~vi~a~G~  260 (433)
                      .+..      .+|         .+++||.||+|+|.
T Consensus       118 ~v~~~~~e~d~~G~~~~~~g~e~~i~aD~V~~AiG~  153 (153)
T d1gtea3         118 AVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGS  153 (153)
T ss_dssp             EEEEEEEEECTTSCEEEEEEEEEEEECSEEEECSCE
T ss_pred             EEEEEEeeECCCCCEecCCCCEEEEECCEEEECcCc
Confidence            4332      121         36999999999983

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.75  E-value=1.5e-08  Score=76.98  Aligned_cols=91  Identities=15%  Similarity=0.315  Sum_probs=66.0

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      ..+++|||||+.|+-+|..|++.|.+   |+|+++...+.                  |.+.    +.....+.+.+++.
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~lG~~---Vtii~~~~~~l------------------~~~d----~ei~~~l~~~l~~~   77 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSRLGSK---VTVVEFQPQIG------------------ASMD----GEVAKATQKFLKKQ   77 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSS------------------SSSC----HHHHHHHHHHHHHT
T ss_pred             CCeEEEECCCchHHHHHHHHHhhCcc---eeEEEeccccc------------------hhhh----hhhHHHHHHHHHhc
Confidence            46899999999999999999999987   99999881111                  0000    00123456778889


Q ss_pred             CcEEEeCceEEEEECCC--CEE--EeCCC-----cEEecceEEEc
Q 013952           85 GIELILSTEIVRADIAS--KTL--LSATG-----LIFKYQILVIA  120 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~--~~v--~~~~~-----~~~~~d~lvlA  120 (433)
                      |++++.++.+.++...+  ..+  ++.++     +++++|.|++|
T Consensus        78 GV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~~~~~ie~D~vlvA  122 (122)
T d1v59a2          78 GLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVA  122 (122)
T ss_dssp             TCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred             cceEEeCCEEEEEEEeCCCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence            99999999999887543  233  33332     47899999987

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=98.74  E-value=8.1e-09  Score=90.19  Aligned_cols=118  Identities=14%  Similarity=0.073  Sum_probs=70.8

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCC------------CC--CCCCCccccc
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPE------------GT--ARLPGFHVCV   69 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~------------~~--~~~~~~~~~~   69 (433)
                      ...+|+||||||+|+++|..|+++|++   |+|+|++..++..... ...+.+.            ..  .....+....
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~---v~v~Er~~~~~~~~~~-g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~   78 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVD---VDVYERSPQPLSGFGT-GIVVQPELVHYLLEQGVELDSISVPSSSMEYVD   78 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSCCCCSC-EEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEE
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCC---EEEEeCCCCCCCCCce-EEEECccHHHHHHHcCcchhhhccCCCcceeEe
Confidence            457999999999999999999999987   9999997222211100 0000000            00  0000000000


Q ss_pred             CC----------CCCCCC-----H-hHHHhCCcEEEeCceEEEEECCCC--EEEeCCCcEEecceEEEccCCCc
Q 013952           70 GS----------GGERLL-----P-EWYKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTV  125 (433)
Q Consensus        70 ~~----------~~~~~~-----~-~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~  125 (433)
                      ..          ......     . ......++.+..+..+..++....  ++++++|.++++|.+|.|.|...
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~v~~~dG~~~~~d~~v~adG~~s  152 (265)
T d2voua1          79 ALTGERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGAS  152 (265)
T ss_dssp             TTTCCEEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTC
T ss_pred             ccCCceecccccccccchhHHHHHHHHHhcccceeecCcEEEEEEeeCCceEEEECCCCEEEEEEEeccccccc
Confidence            00          000000     1 111235678889999998886554  56778999999999999999644

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.74  E-value=3.9e-09  Score=92.20  Aligned_cols=34  Identities=15%  Similarity=0.455  Sum_probs=32.0

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      +.||+||||||++|+.+|..+++.|.+   |++||+.
T Consensus        41 k~yDvvVIGgG~aG~~aA~~~a~~G~k---v~vve~~   74 (261)
T d1mo9a1          41 REYDAIFIGGGAAGRFGSAYLRAMGGR---QLIVDRW   74 (261)
T ss_dssp             SCBSEEEECCSHHHHHHHHHHHHTTCC---EEEEESS
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCe---EEEEecc
Confidence            479999999999999999999999987   9999987

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=1.1e-08  Score=78.10  Aligned_cols=93  Identities=19%  Similarity=0.201  Sum_probs=67.3

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      .++++|||||+.|+-+|..|++.|.+   |++++++....                  +.+.    ......+.+.+++.
T Consensus        22 pk~vvIvGgG~iG~E~A~~l~~~G~~---Vtlv~~~~~~l------------------~~~d----~~~~~~~~~~l~~~   76 (125)
T d3grsa2          22 PGRSVIVGAGYIAVEMAGILSALGSK---TSLMIRHDKVL------------------RSFD----SMISTNCTEELENA   76 (125)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSC------------------TTSC----HHHHHHHHHHHHHT
T ss_pred             CCEEEEEcCCccHHHHHHHHhcCCcE---EEEEeeccccc------------------cchh----hHHHHHHHHHHHHC
Confidence            36899999999999999999999987   99999981111                  0000    00124467778899


Q ss_pred             CcEEEeCceEEEEECCCCE--EE---eCCC------cEEecceEEEccC
Q 013952           85 GIELILSTEIVRADIASKT--LL---SATG------LIFKYQILVIATG  122 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~~--v~---~~~~------~~~~~d~lvlAtG  122 (433)
                      |++++.++.+..+......  +.   ..++      ....+|.+++|+|
T Consensus        77 Gv~i~~~~~v~~i~~~~~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~G  125 (125)
T d3grsa2          77 GVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG  125 (125)
T ss_dssp             TCEEETTEEEEEEEEETTEEEEEEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred             CCEEEeCCEEEEEEEcCCeEEEEEEEccCCcCcCccccccCCEEEEEeC
Confidence            9999999999999765443  22   2233      2467999999998

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.71  E-value=2.2e-08  Score=75.87  Aligned_cols=92  Identities=16%  Similarity=0.253  Sum_probs=64.7

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      ..+++|||||+.|+-.|..+++.|.+   |+|++++. ..                  +.+.    ......+.+.+++.
T Consensus        20 P~~vvIIGgG~iG~E~A~~l~~lG~~---Vtii~~~~-~l------------------~~~D----~~~~~~l~~~l~~~   73 (122)
T d1h6va2          20 PGKTLVVGASYVALECAGFLAGIGLD---VTVMVRSI-LL------------------RGFD----QDMANKIGEHMEEH   73 (122)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCC---EEEEESSS-SS------------------TTSC----HHHHHHHHHHHHHT
T ss_pred             CCeEEEECCCccHHHHHHHHhhcCCe---EEEEEech-hh------------------ccCC----HHHHHHHHHHHHHC
Confidence            36899999999999999999999987   99998661 10                  0000    00124567778899


Q ss_pred             CcEEEeCceEEEEECCC----C--EEEeCCC-----cEEecceEEEccC
Q 013952           85 GIELILSTEIVRADIAS----K--TLLSATG-----LIFKYQILVIATG  122 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~----~--~v~~~~~-----~~~~~d~lvlAtG  122 (433)
                      |++++.++.+..+....    .  .+....+     ..+++|.|++|+|
T Consensus        74 Gv~i~~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~AiG  122 (122)
T d1h6va2          74 GIKFIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG  122 (122)
T ss_dssp             TEEEEESCEEEEEEEEECSTTCEEEEEEECTTSCEEEEEEESEEECCCC
T ss_pred             CCEEEECCEEEEEEEecCCCccEEEEEEEECCCCcEEEEECCEEEEEeC
Confidence            99999999888775321    1  2333221     2467999999998

>d1q1ra3 d.87.1.1 (A:320-422) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.71  E-value=9.8e-08  Score=69.38  Aligned_cols=86  Identities=16%  Similarity=0.366  Sum_probs=71.9

Q ss_pred             cCCCCCCeEEEeecccceEEecCCCC--cEEEEcCCCccccCCcEEEEEEeCCEEEEEEEecCChHHHHHHHHHHHcCCC
Q 013952          338 TGYDYLPYFYSRAFDLSWQFYGDNVG--DTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPS  415 (433)
Q Consensus       338 ~~~~~~p~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~g~~~~~~~~~~~~~~~~~~  415 (433)
                      ..++.+|||||.+++..++.+|...+  +.+..|+.+    ...|..+++++|+|+|+..++ .+.++..+..+|..+.+
T Consensus         2 p~~~~vP~FWSdQ~d~~lQ~~G~~~~~d~~v~rg~~~----~~~f~~~y~~~~~lvav~~vn-~~~~~~~~r~li~~~~~   76 (103)
T d1q1ra3           2 PRDEAAPWFWSDQYEIGLKMVGLSEGYDRIIVRGSLA----QPDFSVFYLQGDRVLAVDTVN-RPVEFNQSKQIITDRLP   76 (103)
T ss_dssp             CCCCCCCEEEEEETTEEEEEEECCTTCSEEEEEEETT----TTEEEEEEEETTEEEEEEEES-CHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCCcEeeecCCCeeEEEECCCCCceEEEecCCC----CCeEEEEEEeCCeEEEEEEeC-CHHHHHHHHHHHHCCCC
Confidence            35678999999999999999998764  345666655    567888999999999999997 67889999999999988


Q ss_pred             CCChhhhcccCCCc
Q 013952          416 VESLDVLKNEGLSF  429 (433)
Q Consensus       416 ~~~~~~~~~~~~~~  429 (433)
                      + +.+.|.|+.++.
T Consensus        77 ~-~~~~L~D~~~~L   89 (103)
T d1q1ra3          77 V-EPNLLGDESVPL   89 (103)
T ss_dssp             C-CHHHHTCTTSCH
T ss_pred             c-CHHHhcCCCCCH
Confidence            7 688899888765

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.70  E-value=5.6e-10  Score=95.20  Aligned_cols=33  Identities=27%  Similarity=0.354  Sum_probs=31.7

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      +||+|||||||||++||.++++.|++   |+|||+.
T Consensus         3 ~~DviVIG~GpaGl~aA~~aar~G~k---V~vIEk~   35 (223)
T d1ebda1           3 ETETLVVGAGPGGYVAAIRAAQLGQK---VTIVEKG   35 (223)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCC---EEEEESS
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCE---EEEEecC
Confidence            69999999999999999999999988   9999988

>d1h6va3 d.87.1.1 (A:367-499) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.67  E-value=1.3e-08  Score=78.12  Aligned_cols=90  Identities=14%  Similarity=0.100  Sum_probs=62.0

Q ss_pred             CCCCCeEEEeecccceEEecCCCC--------cEE---EEcCCCcc------ccCCcEEEEE-E--eCCEEEEEEEecCC
Q 013952          340 YDYLPYFYSRAFDLSWQFYGDNVG--------DTV---LFGDNDLA------SATHKFGTYW-I--KDGKVVGVFLESGT  399 (433)
Q Consensus       340 ~~~~p~~~~~~~~~~~~~~g~~~~--------~~~---~~~~~~~~------~~~~~~~~~~-~--~~~~l~G~~~~g~~  399 (433)
                      |+.+|+++++.|+++.+  |+++.        +.+   .....+..      ....++.+.+ .  ++++|||+|++|++
T Consensus         1 Y~~VP~~vfT~PeiA~V--Glte~eA~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ILGa~ivg~~   78 (133)
T d1h6va3           1 YDNVPTTVFTPLEYGCC--GLSEEKAVEKFGEENIEVYHSFFWPLEWTVPSRDNNKCYAKVICNLKDNERVVGFHVLGPN   78 (133)
T ss_dssp             CSSCCEEECSSSCEEEE--ECCHHHHHHHHCGGGEEEEEEEECCHHHHTTTCCTTCEEEEEEEEGGGTTEEEEEEEESTT
T ss_pred             CCCCCEEecCcchheeE--eCCHHHHHHhccccccchheeccchhhhhhhhhcccccceEEEEEecCcccEEEEEEeCCC
Confidence            67899999998988877  66541        111   11111111      1233444433 3  57999999999999


Q ss_pred             hHHH-HHHHHHHHcCCCCCChhhhcccCCCccc
Q 013952          400 PEEN-KAIAKVARVQPSVESLDVLKNEGLSFAS  431 (433)
Q Consensus       400 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (433)
                      ++|+ +.++.+|++++|+.|+..+.-+-+++++
T Consensus        79 A~ElI~~~~~ai~~~~t~~~l~~~i~~hPT~sE  111 (133)
T d1h6va3          79 AGEVTQGFAAALKCGLTKQQLDSTIGIHPVCAE  111 (133)
T ss_dssp             HHHHHHHHHHHHHTTCBHHHHHHSCCCTTCGGG
T ss_pred             HHHHHHHHHHHHHcCCCHHHHhhccccCCCHHH
Confidence            9996 9999999999999977776666655554

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=98.67  E-value=2.6e-08  Score=89.18  Aligned_cols=37  Identities=27%  Similarity=0.231  Sum_probs=31.2

Q ss_pred             CCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         3 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ..++||+|||+|+|||+||.++++++. ..+|+|+||.
T Consensus         3 ~~~~DVlVIG~G~AGl~AA~~a~~~~~-g~~V~lleK~   39 (311)
T d1kf6a2           3 TFQADLAIVGAGGAGLRAAIAAAQANP-NAKIALISKV   39 (311)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHHCT-TCCEEEEESS
T ss_pred             ceecCEEEECccHHHHHHHHHHHHhCC-CCEEEEEECC
Confidence            346899999999999999999998742 2349999998

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.66  E-value=9e-09  Score=89.62  Aligned_cols=60  Identities=18%  Similarity=0.120  Sum_probs=47.1

Q ss_pred             CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCC-CcEEEEEeCCCcEEECCEEEEcccCccC
Q 013952          203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD-GEVKEVKLKDGRTLEADIVVVGVGGRPL  263 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~-g~~~~v~~~~g~~i~~d~vi~a~G~~p~  263 (433)
                      ...+.+.+.+.+++.|++++++++|++|..+++ +++..|. .+|+++.||.||+...+-|+
T Consensus       235 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~v~~v~-~~g~~~~ad~VI~~~s~~~~  295 (297)
T d2bcgg1         235 LGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVK-TKLGTFKAPLVIADPTYFPE  295 (297)
T ss_dssp             TTHHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEE-ETTEEEECSCEEECGGGCGG
T ss_pred             HHHHHHHHHHHHHhcCCEEEeCCEeeEEEEECCCCEEEEEE-cCCEEEECCEEEEChhhccC
Confidence            456888899999999999999999999976444 4555554 67789999999987555553

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.62  E-value=3.2e-08  Score=86.12  Aligned_cols=37  Identities=27%  Similarity=0.448  Sum_probs=34.4

Q ss_pred             CCCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ||++++||||||||++||++|++|+++|.+   |+|+|++
T Consensus         2 ~~~~~~kVvVIGaGiaGl~~A~~L~~~G~~---V~vier~   38 (268)
T d1c0pa1           2 MMHSQKRVVVLGSGVIGLSSALILARKGYS---VHILARD   38 (268)
T ss_dssp             CCCCSCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESS
T ss_pred             CCCCCCcEEEECccHHHHHHHHHHHHCCCC---EEEEeCC
Confidence            666678999999999999999999999987   9999998

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.60  E-value=3.2e-07  Score=82.87  Aligned_cols=97  Identities=22%  Similarity=0.138  Sum_probs=71.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCC--CeEEEEccCCccCC-----C----------------------------------
Q 013952          162 NGKAVVVGGGYIGLELSAALKINN--IDVSMVYPEPWCMP-----R----------------------------------  200 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g--~~V~li~~~~~~~~-----~----------------------------------  200 (433)
                      -|+|+|||+|++|+-+|..|.+.+  .+|+++++.+.+..     .                                  
T Consensus         4 ~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~y   83 (335)
T d2gv8a1           4 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPLY   83 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCCC
T ss_pred             CCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCcccccCCCCcccCCcccccccccccccccccccccccccc
Confidence            479999999999999999998776  59999998865410     0                                  


Q ss_pred             ------------------------CC--CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCC---Cc---E
Q 013952          201 ------------------------LF--TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD---GR---T  248 (433)
Q Consensus       201 ------------------------~~--~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~---g~---~  248 (433)
                                              .+  ..++.+.+....+..+..++++++|++++.. +++ ..|++.+   ++   .
T Consensus        84 ~~l~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~yl~~~~~~~~~~I~~~t~V~~v~~~-~~~-w~Vt~~~~~~~~~~~~  161 (335)
T d2gv8a1          84 RDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKK-DGS-WVVTYKGTKAGSPISK  161 (335)
T ss_dssp             TTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEE-TTE-EEEEEEESSTTCCEEE
T ss_pred             hhhhcCCcHhhhhhhhhcCCcccccCCchHHHHHHHHHHHHHhhhcccCceEEEEEEec-CCE-EEEEEEecCCCCeEEE
Confidence                                    00  1356677777777788899999999999883 333 3455433   21   4


Q ss_pred             EECCEEEEcccC
Q 013952          249 LEADIVVVGVGG  260 (433)
Q Consensus       249 i~~d~vi~a~G~  260 (433)
                      ..+|.||+|+|.
T Consensus       162 ~~~d~VI~AtG~  173 (335)
T d2gv8a1         162 DIFDAVSICNGH  173 (335)
T ss_dssp             EEESEEEECCCS
T ss_pred             EEeeEEEEcccc
Confidence            679999999994

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.60  E-value=5e-08  Score=74.07  Aligned_cols=92  Identities=14%  Similarity=0.279  Sum_probs=67.0

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      ..+++|||||+.|+-.|..+++.|.+   |++++++.....                  .+.    ......+.+.+++.
T Consensus        25 p~~~viiG~G~iglE~A~~~~~~G~~---Vtvi~~~~~~l~------------------~~d----~~~~~~l~~~l~~~   79 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVWGRIGSE---VTVVEFASEIVP------------------TMD----AEIRKQFQRSLEKQ   79 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCE---EEEECSSSSSST------------------TSC----HHHHHHHHHHHHHS
T ss_pred             CCeEEEEccchHHHHHHHHHHhcCCe---EEEEEEccccCc------------------hhh----hcchhhhhhhhhcc
Confidence            46899999999999999999999987   999999811110                  000    00123467788899


Q ss_pred             CcEEEeCceEEEEECCCCE--EEe--C-CC--cEEecceEEEcc
Q 013952           85 GIELILSTEIVRADIASKT--LLS--A-TG--LIFKYQILVIAT  121 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~~--v~~--~-~~--~~~~~d~lvlAt  121 (433)
                      |++++.++.+.+++..+..  +.+  . ++  +++++|++++|.
T Consensus        80 GI~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vLvAA  123 (123)
T d1dxla2          80 GMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSA  123 (123)
T ss_dssp             SCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCC
T ss_pred             cceEEcCCceEEEEEccCeEEEEEEECCCCeEEEEEcCEEEEcC
Confidence            9999999999999865542  332  2 33  358999999873

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.56  E-value=9.6e-08  Score=80.84  Aligned_cols=126  Identities=15%  Similarity=0.208  Sum_probs=83.2

Q ss_pred             CCCCCCCCCEEEecCHHHHHHHHHHH---H----hcCCCcEEEECCCHHHHHHHHHHHhC--------------------
Q 013952          132 GVEGADAKNIFYLREIDDADKLVEAI---K----AKKNGKAVVVGGGYIGLELSAALKIN--------------------  184 (433)
Q Consensus       132 ~~~g~~~~~v~~~~~~~~~~~~~~~~---~----~~~~~~v~ViG~G~~g~e~a~~l~~~--------------------  184 (433)
                      +|||.+.++|+...++-.   +.+..   .    ...+++|+|||+|.+|+++|..+.+.                    
T Consensus         5 ~IPGedl~gV~~A~dfl~---~~N~~p~~~~~~~~~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~   81 (225)
T d1cjca1           5 DIPGEELPGVFSARAFVG---WYNGLPENRELAPDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQS   81 (225)
T ss_dssp             CCTTTTSTTEEEHHHHHH---HHTTCGGGTTCCCCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTC
T ss_pred             CCCCCCCCCcEeHHHHHH---HHhCCccccccCccccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhcc
Confidence            489999999997554332   21111   0    12479999999999999999999873                    


Q ss_pred             C-CeEEEEccCCccCCCCCCHHHHH-----------------------------------HHHHHH--------------
Q 013952          185 N-IDVSMVYPEPWCMPRLFTADIAA-----------------------------------FYEGYY--------------  214 (433)
Q Consensus       185 g-~~V~li~~~~~~~~~~~~~~~~~-----------------------------------~l~~~l--------------  214 (433)
                      | .+|+++.|.+..-..+-.+++.+                                   .+.+.+              
T Consensus        82 g~~~V~iv~RRg~~~~~ft~~Elre~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (225)
T d1cjca1          82 RVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPADFLGLQDRIKEAARPRKRLMELLLRTATEKPGVEEAARRAS  161 (225)
T ss_dssp             CCCEEEEECSSCGGGCCCCHHHHHHHHTCTTEEEECCGGGGTTHHHHTTTSCHHHHHHHHHHHHHHHSCCCHHHHHHHHT
T ss_pred             CCCeEEEEEEcChHhCCCCchhhhcccccCCCcceechhhhccchhhhhhhhhHHHHHHHHHHHHHHhcccccccccccc
Confidence            4 58999998765433322233221                                   111111              


Q ss_pred             HhcCcEEEcCCeEEEEEecCCC-cEEEEEeC---------------CC--cEEECCEEEEcccC
Q 013952          215 ANKGIKIIKGTVAVGFTTNADG-EVKEVKLK---------------DG--RTLEADIVVVGVGG  260 (433)
Q Consensus       215 ~~~GV~v~~~~~v~~i~~~~~g-~~~~v~~~---------------~g--~~i~~d~vi~a~G~  260 (433)
                      ...++.+++.....++..++++ ++..+++.               .|  .+++||+||.|+|+
T Consensus       162 ~~~~i~~~f~~~p~~i~~~~~g~~v~~v~~~~~~~~~~~~~~~~~~tg~~~~ipadlVi~AiGf  225 (225)
T d1cjca1         162 ASRAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIGY  225 (225)
T ss_dssp             CSEEEEEECSEEEEEEEECTTSSSEEEEEEEEEEEESSGGGCEEEEEEEEEEEECSEEEECCCE
T ss_pred             cccceEEEeecccccccccCCCCeEEEEEEEEeEECCCCCCCcccCCCcEEEEECCEEEECCCC
Confidence            1246899999999999885554 56555442               12  25999999999995

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.56  E-value=1.6e-08  Score=86.46  Aligned_cols=36  Identities=36%  Similarity=0.441  Sum_probs=33.9

Q ss_pred             CCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         2 m~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      |.++|||+||||||||++||.+|++.|++   |+|||+.
T Consensus         2 m~~~yDviVIG~GpAGl~aA~~aa~~G~k---V~lie~~   37 (233)
T d1v59a1           2 INKSHDVVIIGGGPAGYVAAIKAAQLGFN---TACVEKR   37 (233)
T ss_dssp             EEEEEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESS
T ss_pred             CCcccCEEEECCCHHHHHHHHHHHHCCCc---EEEEEec
Confidence            66789999999999999999999999998   9999987

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=98.51  E-value=2.9e-06  Score=73.40  Aligned_cols=103  Identities=19%  Similarity=0.351  Sum_probs=76.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCC-----CCHHHHHHHHH-----------------------
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL-----FTADIAAFYEG-----------------------  212 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~-----~~~~~~~~l~~-----------------------  212 (433)
                      ..++|+|||+|+.|+-+|..|++.|.+|+++++.+......     +.+...+.+.+                       
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~   82 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTG   82 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTTC
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceEEEECccHHHHHHHcCcchhhhccCCCcceeEeccCC
Confidence            35799999999999999999999999999999865432210     12221111111                       


Q ss_pred             ----------------------HHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChh
Q 013952          213 ----------------------YYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS  265 (433)
Q Consensus       213 ----------------------~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~  265 (433)
                                            .-...++.+++++.+.++....++  ..+++.||+++++|.+|.|.|......
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--v~v~~~dG~~~~~d~~v~adG~~s~~r  155 (265)
T d2voua1          83 ERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSET--VQMRFSDGTKAEANWVIGADGGASVVR  155 (265)
T ss_dssp             CEEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSC--EEEEETTSCEEEESEEEECCCTTCHHH
T ss_pred             ceecccccccccchhHHHHHHHHHhcccceeecCcEEEEEEeeCCc--eEEEECCCCEEEEEEEecccccccccc
Confidence                                  223457889999999999874333  678999999999999999999765443

>d1mo9a3 d.87.1.1 (A:384-523) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.50  E-value=8.6e-08  Score=74.41  Aligned_cols=80  Identities=16%  Similarity=0.232  Sum_probs=59.1

Q ss_pred             CCCeEEEeecccceEEecCCC------CcEEEEcCCC---------------c---------cccCCcEEEEEE--eCCE
Q 013952          342 YLPYFYSRAFDLSWQFYGDNV------GDTVLFGDND---------------L---------ASATHKFGTYWI--KDGK  389 (433)
Q Consensus       342 ~~p~~~~~~~~~~~~~~g~~~------~~~~~~~~~~---------------~---------~~~~~~~~~~~~--~~~~  389 (433)
                      .+|+++++.|+++.+  |.++      +..+..+..+               .         .....+|+|+++  ++|+
T Consensus         3 ~iP~vvfT~PeiA~V--GlTe~eA~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~vKlv~d~~t~~   80 (140)
T d1mo9a3           3 NYPDFLHTHYEVSFL--GMGEEEARAAGHEIVTIKMPPDTENGLNVALPASDRTMLYAFGKGTAHMSGFQKIVIDAKTRK   80 (140)
T ss_dssp             SCCEEEESSSEEEEE--ECCHHHHHHTTCCEEEEEESCCSTTTTCSSCSCCTTTHHHHHSTTTGGGGCEEEEEEETTTCB
T ss_pred             CCCcEeccCCccEEE--ECCHHHHHHcCCCeEEEEEeecccccceeeeeeccchhhhhhhhhcCCCCceEEEEEecCCCc
Confidence            468999988887777  6664      2222222110               0         023567999888  6899


Q ss_pred             EEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhc
Q 013952          390 VVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLK  423 (433)
Q Consensus       390 l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~  423 (433)
                      |+|+|++|++++|+ +.++.+|++++|++|++.+.
T Consensus        81 IlGa~ivG~~A~ElI~~~~~ai~~~~t~~dl~~~~  115 (140)
T d1mo9a3          81 VLGAHHVGYGAKDAFQYLNVLIKQGLTVDELGDMD  115 (140)
T ss_dssp             EEEEEEEESSCHHHHHHHHHHHHTTCBHHHHHTSC
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHcCCCHHHHHhcC
Confidence            99999999999996 99999999999999777663

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.49  E-value=2.1e-08  Score=83.20  Aligned_cols=34  Identities=29%  Similarity=0.390  Sum_probs=31.2

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      .++|+||||||+||+||.+|+++|++.  |+|+|+.
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~--V~v~E~~   37 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARLGYSD--ITIFEKQ   37 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCC--EEEEESS
T ss_pred             CCEEEEECChHHHHHHHHHHHHCCCCe--EEEEEec
Confidence            579999999999999999999999743  9999998

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=98.46  E-value=5.4e-08  Score=85.59  Aligned_cols=34  Identities=32%  Similarity=0.436  Sum_probs=31.1

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHH-cCCCCCcEEEEcCC
Q 013952            4 KSFKYVILGGGVSAGYAAREFAK-QGVKPGELAIISKE   40 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~-~g~~~~~V~lie~~   40 (433)
                      ..+||+||||||+||+||.+|++ .|++   |+|+|+.
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~---V~vlE~~   66 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNVQ---VAIIEQS   66 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSC---EEEEESS
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCCe---EEEEecC
Confidence            36899999999999999999987 4988   9999998

>d1nhpa3 d.87.1.1 (A:322-447) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.45  E-value=8.8e-08  Score=72.88  Aligned_cols=81  Identities=15%  Similarity=0.005  Sum_probs=56.3

Q ss_pred             CeEEEeecccceEEecCCCCc------E-----EEEcCCCcc--ccCCcEEEEEE--eCCEEEEEEEecCC-hHH-HHHH
Q 013952          344 PYFYSRAFDLSWQFYGDNVGD------T-----VLFGDNDLA--SATHKFGTYWI--KDGKVVGVFLESGT-PEE-NKAI  406 (433)
Q Consensus       344 p~~~~~~~~~~~~~~g~~~~~------~-----~~~~~~~~~--~~~~~~~~~~~--~~~~l~G~~~~g~~-~~~-~~~~  406 (433)
                      ......+|++.+..+|+++.+      .     +...+....  ....+|.|+++  ++++|||+|++|++ ++| ++.+
T Consensus         4 gt~~~~vfd~eiasvGlte~eA~~~g~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~t~~IlG~~ivG~~~a~e~I~~~   83 (126)
T d1nhpa3           4 GSSGLAVFDYKFASTGINEVMAQKLGKETKAVTVVEDYLMDFNPDKQKAWFKLVYDPETTQILGAQLMSKADLTANINAI   83 (126)
T ss_dssp             CCEEEEETTEEEEEEECCHHHHHHHTCCCEEEEEEEESSCTTCTTCCEEEEEEEECTTTCBEEEEEEEESSCCTTHHHHH
T ss_pred             cCeEEeEcCccEEEecccHHHHHHCCCCEEEEEEecCcchhhcCCCcceeEEEEEECCCCCEEEEEEEechhHHHHHHHH
Confidence            345567788888888988621      1     111111111  23457888887  56999999999964 777 5999


Q ss_pred             HHHHHcCCCCCChhhhcc
Q 013952          407 AKVARVQPSVESLDVLKN  424 (433)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~  424 (433)
                      +.+|+.++|++||..+.-
T Consensus        84 ~~ai~~~~t~~dL~~~~~  101 (126)
T d1nhpa3          84 SLAIQAKMTIEDLAYADF  101 (126)
T ss_dssp             HHHHHTTCBHHHHHTCCC
T ss_pred             HHHHHcCCCHHHHhcCcc
Confidence            999999999997665543

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=98.43  E-value=1.3e-07  Score=85.28  Aligned_cols=34  Identities=29%  Similarity=0.467  Sum_probs=31.9

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      +.+||+|||+|+|||+||.+++++|.+   |+|+||.
T Consensus         6 ~~~DVlVVG~G~AGl~AAl~aa~~G~~---V~lleK~   39 (330)
T d1neka2           6 REFDAVVIGAGGAGMRAALQISQSGQT---CALLSKV   39 (330)
T ss_dssp             EEESCEEECCSHHHHHHHHHHHHTTCC---CEEECSS
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHcCCe---EEEEeCC
Confidence            368999999999999999999999987   9999997

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.39  E-value=1e-07  Score=84.40  Aligned_cols=33  Identities=21%  Similarity=0.368  Sum_probs=31.3

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      +.||+||||||+||++|..|+++|++   |+|+|+.
T Consensus         2 k~~V~IvGaGp~Gl~~A~~L~~~G~~---v~vlE~~   34 (292)
T d1k0ia1           2 KTQVAIIGAGPSGLLLGQLLHKAGID---NVILERQ   34 (292)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCC---EEEECSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCC---EEEEeCC
Confidence            46999999999999999999999998   9999998

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.37  E-value=1.6e-07  Score=69.24  Aligned_cols=91  Identities=16%  Similarity=0.124  Sum_probs=64.2

Q ss_pred             CCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcC
Q 013952          139 KNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKG  218 (433)
Q Consensus       139 ~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~G  218 (433)
                      ..+++...+.+...+       .+|+|+|||+|.+|+++|..|++.+.+++++.+.+.....               ..+
T Consensus        16 G~i~Hs~~y~~~~~f-------~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~~~~~~---------------~~~   73 (107)
T d2gv8a2          16 GSVLHSSLFREPELF-------VGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGDIQ---------------NES   73 (107)
T ss_dssp             TSEEEGGGCCCGGGG-------TTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCCSCB---------------CSS
T ss_pred             ccEEECCcCcchhhc-------CCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecCccccc---------------ccc
Confidence            457776655544333       7899999999999999999999999988877766544321               112


Q ss_pred             cEEEcCCeEEEEEecCCCcEEEEEeCCCcEEE-CCEEEEc
Q 013952          219 IKIIKGTVAVGFTTNADGEVKEVKLKDGRTLE-ADIVVVG  257 (433)
Q Consensus       219 V~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~-~d~vi~a  257 (433)
                      +..  ...+.++..  +++  .+.+.||+.+. .|.||+|
T Consensus        74 ~~~--~~~i~~~~~--~~~--~v~~~dG~~~~~vD~Ii~C  107 (107)
T d2gv8a2          74 LQQ--VPEITKFDP--TTR--EIYLKGGKVLSNIDRVIYC  107 (107)
T ss_dssp             EEE--ECCEEEEET--TTT--EEEETTTEEECCCSEEEEC
T ss_pred             cee--cCCeeEEec--CCC--EEEEcCCCEEeCCCEEEEC
Confidence            322  234666665  442  58889998876 6999986

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.36  E-value=1.4e-07  Score=80.37  Aligned_cols=33  Identities=36%  Similarity=0.558  Sum_probs=31.6

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      .|||+|||||||||+||.+|++.|++   |+|||+.
T Consensus         6 dyDviIIG~GPaGlsaA~~aa~~G~~---V~viE~~   38 (229)
T d1ojta1           6 EYDVVVLGGGPGGYSAAFAAADEGLK---VAIVERY   38 (229)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESS
T ss_pred             ccCEEEECcCHHHHHHHHHHHHCCCe---EEEEecc
Confidence            69999999999999999999999998   9999987

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=98.31  E-value=4.7e-06  Score=69.41  Aligned_cols=95  Identities=20%  Similarity=0.286  Sum_probs=68.9

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEccCC-cc------------CCCC----CC------HHHHHHHHHHHH-hcCc
Q 013952          164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEP-WC------------MPRL----FT------ADIAAFYEGYYA-NKGI  219 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~-~~------------~~~~----~~------~~~~~~l~~~l~-~~GV  219 (433)
                      .|+|||+|+.|+|+|...++.|.++.+++... .+            ....    .+      ......+++.++ ..++
T Consensus         4 DVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~~~cnp~~gg~~kg~l~reid~kG~av~a~raQ~k~~l~~~~nL   83 (230)
T d2cula1           4 QVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLRPL   83 (230)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCTTE
T ss_pred             cEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhcccccCCccccCCCcceeeeeeccchhhhhHHHHHHHHHhhhcCH
Confidence            58999999999999999999999999997531 10            0000    00      122333444444 4578


Q ss_pred             EEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013952          220 KIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG  260 (433)
Q Consensus       220 ~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~  260 (433)
                      .++... |.++.. +++++..|.+.+|.++.|..||++||.
T Consensus        84 ~i~q~~-V~dli~-e~~~v~gV~t~~G~~~~AkaVILtTGT  122 (230)
T d2cula1          84 HLFQAT-ATGLLL-EGNRVVGVRTWEGPPARGEKVVLAVGS  122 (230)
T ss_dssp             EEEECC-EEEEEE-ETTEEEEEEETTSCCEECSEEEECCTT
T ss_pred             HHHhcc-ceeeEe-cccceeeEEeccccEEEEeEEEEccCc
Confidence            888664 566654 477888999999999999999999995

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=2.6e-07  Score=84.25  Aligned_cols=34  Identities=32%  Similarity=0.511  Sum_probs=32.1

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ++.||||||||+|||+||++|+++|++   |+|+|++
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~~---V~VlEa~   37 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGMD---VTLLEAR   37 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCE---EEEECSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCC---EEEEeCC
Confidence            467899999999999999999999987   9999999

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.27  E-value=5.4e-07  Score=75.56  Aligned_cols=63  Identities=19%  Similarity=0.216  Sum_probs=44.3

Q ss_pred             CCCCCCCCCEEEecCHHHHHHHHHHHH-------hcCCCcEEEECCCHHHHHHHHHHH--------------------hC
Q 013952          132 GVEGADAKNIFYLREIDDADKLVEAIK-------AKKNGKAVVVGGGYIGLELSAALK--------------------IN  184 (433)
Q Consensus       132 ~~~g~~~~~v~~~~~~~~~~~~~~~~~-------~~~~~~v~ViG~G~~g~e~a~~l~--------------------~~  184 (433)
                      +|||.+.++|+...++-.   +.+...       ...+++|+|||+|.+|+++|..+.                    +.
T Consensus         5 ~IPGedl~gV~~A~dfl~---~~N~~p~~~~~~~~~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~   81 (216)
T d1lqta1           5 NIPGEDLPGSIAAVDFVG---WYNAHPHFEQVSPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPR   81 (216)
T ss_dssp             CCTTTTSTTEEEHHHHHH---HHTTCGGGTTCCCCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTC
T ss_pred             CCCCCCCCCcEeHHHHHH---HHhCCccccccCccccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhc
Confidence            489999999997554332   111111       124789999999999999999876                    34


Q ss_pred             C-CeEEEEccCCcc
Q 013952          185 N-IDVSMVYPEPWC  197 (433)
Q Consensus       185 g-~~V~li~~~~~~  197 (433)
                      | .+|+++.|....
T Consensus        82 ~~~~V~iv~RRg~~   95 (216)
T d1lqta1          82 GIQEVVIVGRRGPL   95 (216)
T ss_dssp             CCCEEEEECSSCGG
T ss_pred             CCceEEEEEECChH
Confidence            5 479999887543

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.23  E-value=2.6e-05  Score=67.80  Aligned_cols=157  Identities=14%  Similarity=0.087  Sum_probs=97.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccCCccCCCC----CCHHH------------------------------
Q 013952          162 NGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWCMPRL----FTADI------------------------------  206 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g~-~V~li~~~~~~~~~~----~~~~~------------------------------  206 (433)
                      |-+|+|||+|+.|+-+|..|++.|. +|+++++.+.+....    +.+..                              
T Consensus         1 ~~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~~~g~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g   80 (288)
T d3c96a1           1 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQSG   80 (288)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEECTTS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCceEEEECHHHHHHHHHcCchhhhHhhhcccccceeEcCCC
Confidence            3579999999999999999999995 899999876543211    11111                              


Q ss_pred             --------------------------HHHHHH--HHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCC----cEEECCEE
Q 013952          207 --------------------------AAFYEG--YYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG----RTLEADIV  254 (433)
Q Consensus       207 --------------------------~~~l~~--~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g----~~i~~d~v  254 (433)
                                                ...+.+  .....++.+.++++++.+...+++  ..+.+.++    +++.+|++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--v~v~~~~g~~~~~~~~ad~v  158 (288)
T d3c96a1          81 ATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEERDGR--VLIGARDGHGKPQALGADVL  158 (288)
T ss_dssp             CEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEEETTE--EEEEEEETTSCEEEEEESEE
T ss_pred             CEEEeccccccccccCcccccchhhhHHHHHHHHHHhccCeeeecCcEEEEeeecCCc--EEEEEEcCCCCeEEEeecee
Confidence                                      111111  123458889999999988874333  34555554    47999999


Q ss_pred             EEcccCccChhhhhcccccCCCcEEeCCCCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHh
Q 013952          255 VVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIM  329 (433)
Q Consensus       255 i~a~G~~p~~~~~~~~~~~~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~  329 (433)
                      |.|-|.+....-.....    ..............++..+||++....+..+     .....|+..+...+..+.
T Consensus       159 i~ADG~~S~vr~~~~~~----~~~~~~~~~~~~~~~~~~~gda~h~~~p~~g-----~G~~~ai~d~~~l~~~l~  224 (288)
T d3c96a1         159 VGADGIHSAVRAHLHPD----QRPLRDPLPHWGRGRITLLGDAAHLMYPMGA-----NGASQAILDGIELAAALA  224 (288)
T ss_dssp             EECCCTTCHHHHHHCTT----CCCCCCCCSCCCBTTEEECTHHHHCCCSSTT-----CTHHHHHHHHHHHHHHHH
T ss_pred             eccCCccceeeeeeccc----cccccccccccccCcceecccccceeCCccc-----cchhhhhhhHHHHHHHHh
Confidence            99999765443221100    0000111223356789999999876655433     334556666666666654

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.21  E-value=3.8e-07  Score=80.76  Aligned_cols=32  Identities=31%  Similarity=0.607  Sum_probs=30.9

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      +||||||||++|++||++|++.|.+   |+|+|++
T Consensus         2 ~dv~IIGaG~sGl~~A~~L~~~g~~---V~iiEk~   33 (298)
T d1i8ta1           2 YDYIIVGSGLFGAVCANELKKLNKK---VLVIEKR   33 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCC---EEEECSS
T ss_pred             ccEEEECCcHHHHHHHHHHHhCCCc---EEEEECC
Confidence            7999999999999999999999987   9999999

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.21  E-value=4.6e-07  Score=79.30  Aligned_cols=33  Identities=24%  Similarity=0.484  Sum_probs=30.0

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      .||+|||||+|||+||.+|+++|+++  |+|+|++
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~G~~~--V~vlE~~   33 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEAGITD--LLILEAT   33 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHTTCCC--EEEECSS
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCc--EEEEECC
Confidence            48999999999999999999999632  9999998

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=98.19  E-value=1.5e-06  Score=73.86  Aligned_cols=63  Identities=13%  Similarity=0.159  Sum_probs=43.7

Q ss_pred             ccccCCCCCCCCCCCCEEEecCHH-HHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Q 013952          125 VLRLTDFGVEGADAKNIFYLREID-DADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP  195 (433)
Q Consensus       125 ~~~~~~~~~~g~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~  195 (433)
                      |++|+.+|++... ..+++..+.. +..       ++++|+|+|||+|.+|+++|..+++.+.+++++.+.+
T Consensus         2 P~iP~~pG~e~F~-G~v~HS~~~~~~~~-------~~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~   65 (235)
T d1w4xa2           2 PQLPNFPGLKDFA-GNLYHTGNWPHEPV-------DFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP   65 (235)
T ss_dssp             CCCCCCTTGGGCC-SEEEEGGGCCSSCC-------CCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred             CCCCCCCChhhCC-CcEEecCcCCCCCC-------CCCCCEEEEECCCccHHHHHHHHHhhhcccccccccc
Confidence            5666643333332 3466655442 111       2268999999999999999999999999988876554

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.18  E-value=4.7e-07  Score=80.92  Aligned_cols=32  Identities=25%  Similarity=0.433  Sum_probs=30.6

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ++|+|||||+|||+||++|+++|++   |+|+|++
T Consensus         2 KkV~IIGaG~aGL~aA~~La~~G~~---V~vlE~~   33 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKIHGLN---VTVFEAE   33 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSCE---EEEECSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCC---EEEEeCC
Confidence            6899999999999999999999987   9999998

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=98.13  E-value=7.5e-07  Score=81.56  Aligned_cols=111  Identities=13%  Similarity=0.170  Sum_probs=66.5

Q ss_pred             HhcCcEEEcCCeEEEEEecCC-CcEEEEEe---CCCc--EEECCEEEEcccCccChhhh-hcccc---------------
Q 013952          215 ANKGIKIIKGTVAVGFTTNAD-GEVKEVKL---KDGR--TLEADIVVVGVGGRPLISLF-KGQVA---------------  272 (433)
Q Consensus       215 ~~~GV~v~~~~~v~~i~~~~~-g~~~~v~~---~~g~--~i~~d~vi~a~G~~p~~~~~-~~~~~---------------  272 (433)
                      .+.++++++++.|.+|..+++ +++..|+.   .+|+  .+.++.||+|.|..-...++ ..++.               
T Consensus       229 ~~~~~~l~~~a~V~~i~~~~~~~r~~gV~~~d~~~g~~~~i~a~~vilaaGa~~tp~lL~~Sg~~~~~~~~~~~~~~~~~  308 (379)
T d2f5va1         229 PEERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFGQLGRPNPTNPPELLP  308 (379)
T ss_dssp             EEEEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEEEEEEEEECSCHHHHHHHHHHTTSSCCSSCCTTSCCSSST
T ss_pred             cCCCCEEecCCEEEEEEEeCCCCEEEEEEEEECCCCEEEEEeceEEEeccCccCCHHHHhhcccccccccccccCccccc
Confidence            345799999999999987443 46777775   3454  57899999999964443333 11110               


Q ss_pred             ------c--C--CCcEEeCCCCCC-CCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhcc
Q 013952          273 ------E--N--KGGIETDDFFKT-SADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMAT  331 (433)
Q Consensus       273 ------~--~--~g~i~vd~~~~t-~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~  331 (433)
                            +  +  ...=+||+++++ ..+|+|++|... .|.....+    ++. ....-|..+|++|...
T Consensus       309 ~~g~h~mG~~~~~~~~vvd~~~~v~g~~nlyv~d~sv-~p~~~~~n----Pt~-t~~alA~r~a~~i~~~  372 (379)
T d2f5va1         309 SLGSHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGN-IPTAYGAN----PTL-TAMSLAIKSCEYIKQN  372 (379)
T ss_dssp             TTTBTCBCSCTTTTTCSBCTTCBBTTCSSEEECSGGG-CCSCCCSC----SHH-HHHHHHHHHHHHHHHH
T ss_pred             ccceeecccCCCCCCccCCCCCcccccCCEEEeCCcc-cCCccccC----cHH-HHHHHHHHHHHHHHHh
Confidence                  0  0  011368888888 889999876533 23221111    122 2233455677777754

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.09  E-value=5.8e-06  Score=65.31  Aligned_cols=73  Identities=16%  Similarity=0.038  Sum_probs=52.4

Q ss_pred             CeEEEE--CCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHh
Q 013952            6 FKYVIL--GGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   83 (433)
Q Consensus         6 ~dvvII--GgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (433)
                      ..++|+  |||+.|+.+|..|+++|.+   |+++++...+      ...+.                ........+.+++
T Consensus        40 ~~vvi~d~ggg~ig~e~A~~la~~G~~---Vtlv~~~~~~------~~~~~----------------~~~~~~~~~~l~~   94 (156)
T d1djqa2          40 KRVVILNADTYFMAPSLAEKLATAGHE---VTIVSGVHLA------NYMHF----------------TLEYPNMMRRLHE   94 (156)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHTTCE---EEEEESSCTT------THHHH----------------TTCHHHHHHHHHH
T ss_pred             CceEEEecCCChHHHHHHHHHHHcCCe---EEEEecCCcc------ccccc----------------hhHHHHHHHHHhh
Confidence            355665  9999999999999999987   9999988111      11110                0112345677888


Q ss_pred             CCcEEEeCceEEEEECCCCE
Q 013952           84 KGIELILSTEIVRADIASKT  103 (433)
Q Consensus        84 ~~v~~~~~~~v~~i~~~~~~  103 (433)
                      .|++++.++.+.++..+...
T Consensus        95 ~GV~i~~~~~v~~i~~~~v~  114 (156)
T d1djqa2          95 LHVEELGDHFCSRIEPGRME  114 (156)
T ss_dssp             TTCEEEETEEEEEEETTEEE
T ss_pred             ccceEEeccEEEEecCcceE
Confidence            99999999999999865433

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.07  E-value=1.2e-05  Score=68.90  Aligned_cols=34  Identities=21%  Similarity=0.274  Sum_probs=31.3

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc
Q 013952          164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC  197 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~  197 (433)
                      .|+|||+|..|+-+|..|++.|.+|+++++.+.+
T Consensus         7 DviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~   40 (297)
T d2bcgg1           7 DVIVLGTGITECILSGLLSVDGKKVLHIDKQDHY   40 (297)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCC
Confidence            5899999999999999999999999999987643

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.06  E-value=6.6e-06  Score=65.41  Aligned_cols=46  Identities=13%  Similarity=0.200  Sum_probs=35.6

Q ss_pred             HhHHHhCCcEEEeCceEEEEECCCCEEEeCCC-cEEecceEEEccCC
Q 013952           78 PEWYKEKGIELILSTEIVRADIASKTLLSATG-LIFKYQILVIATGS  123 (433)
Q Consensus        78 ~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~-~~~~~d~lvlAtG~  123 (433)
                      ...++..++.+..++.+..++.++..+...+. +++++|.+|+|+|-
T Consensus       115 ~~~~~~~gv~~~~~~~v~~i~~~gv~~~~~g~e~~i~aD~Vv~A~Gq  161 (162)
T d1ps9a2         115 RTTLLSRGVKMIPGVSYQKIDDDGLHVVINGETQVLAVDNVVICAGQ  161 (162)
T ss_dssp             HHHHHHTTCEEECSCEEEEEETTEEEEEETTEEEEECCSEEEECCCE
T ss_pred             HHHHhhCCeEEEeeeEEEEEcCCCCEEecCCeEEEEECCEEEECCCC
Confidence            45567889999999999999876655544333 35899999999993

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.01  E-value=1.7e-06  Score=76.93  Aligned_cols=33  Identities=33%  Similarity=0.562  Sum_probs=31.2

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      +++|+|||||++||+||..|+++|++   |+|+|++
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~---V~viEk~   34 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQ---VHIIDQR   34 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCE---EEEEESS
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCC---EEEEECC
Confidence            57899999999999999999999887   9999999

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.93  E-value=3.3e-06  Score=73.73  Aligned_cols=33  Identities=15%  Similarity=0.388  Sum_probs=30.0

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      .||+|||||+|||++|..|+++|..  .|+|+|+.
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~--~V~V~Er~   34 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIG--KVTLLESS   34 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCS--EEEEEESS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCC--eEEEEeCC
Confidence            5999999999999999999999962  29999998

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=97.91  E-value=3.9e-05  Score=67.86  Aligned_cols=86  Identities=26%  Similarity=0.414  Sum_probs=62.3

Q ss_pred             HHHhcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEECCEEEEcccC-----ccCh--h--------h-hhccc
Q 013952          213 YYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGG-----RPLI--S--------L-FKGQV  271 (433)
Q Consensus       213 ~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~---~~g~--~i~~d~vi~a~G~-----~p~~--~--------~-~~~~~  271 (433)
                      ..+..+|+++.++.+.++.. +++++..+..   .+|+  .+.++.||+|||-     ..++  .        + +..+.
T Consensus       144 ~~~~~~v~i~~~~~v~~Ll~-d~g~v~Gvv~~~~~~g~~~~~~AkaVILATGG~g~~y~~ttn~~~~tGDG~~mA~~aGa  222 (311)
T d1kf6a2         144 SLQFPQIQRFDEHFVLDILV-DDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHGV  222 (311)
T ss_dssp             HTTCTTEEEEETEEEEEEEE-ETTEEEEEEEEETTTTEEEEEECSCEEECCCCCGGGSSSBSSCTTCSCHHHHHHHTTTC
T ss_pred             HHccCcceeEeeeEeeeeEe-cCCcceeEEEEEcCCCcEEEEECCEEEEcCCCccccccccCCCCCcCcHHHHHHHhccc
Confidence            33445899999999999977 5677776653   4564  4689999999993     2211  1        1 13344


Q ss_pred             cc-CCCcEEeCCCCCCCCCCeEEcCcccc
Q 013952          272 AE-NKGGIETDDFFKTSADDVYAVGDVAT  299 (433)
Q Consensus       272 ~~-~~g~i~vd~~~~t~~~~vfa~Gd~~~  299 (433)
                      .+ +-.+|.+++...+..+++|+.+++..
T Consensus       223 ~l~dme~iq~~p~~~~~~~~~~~~~~~~~  251 (311)
T d1kf6a2         223 PLRDMGGIETDQNCETRIKGLFAVGECSS  251 (311)
T ss_dssp             CEESCCEEECCTTSBCSSBTEEECGGGEE
T ss_pred             ceeecccccccccchhcccCCCcCcceee
Confidence            44 56788999999999999999999875

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.90  E-value=6.6e-06  Score=69.56  Aligned_cols=127  Identities=16%  Similarity=0.071  Sum_probs=77.9

Q ss_pred             cEEEECCCHHHHHHHHHHHhC--CCeEEEEccCCccCC---------CCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013952          164 KAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPWCMP---------RLFTADIAAFYEGYYANKGIKIIKGTVAVGFTT  232 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~--g~~V~li~~~~~~~~---------~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~  232 (433)
                      +|+|||+|+.|+.+|..|.+.  |.+|+++++.+.+..         ......+.......+++.|++++.++.|..   
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---   79 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVGR---   79 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCBTT---
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceehhhccccccccccchhhhhhhhhcCCeeEEeeEEeCc---
Confidence            899999999999999999765  679999998876421         112335566677788899999998887621   


Q ss_pred             cCCCcEEEEEeCCCcEEECCEEEEcccCccChhhhhccccc-CCCcEEeCCCC-CCCCCCeEEcCcccccc
Q 013952          233 NADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFF-KTSADDVYAVGDVATFP  301 (433)
Q Consensus       233 ~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~-~t~~~~vfa~Gd~~~~~  301 (433)
                        +-..  ..+    .-.+|.+++|+|..+........... +...+...... ....+..+..|+.....
T Consensus        80 --~~~~--~~l----~~~~d~v~~a~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  142 (230)
T d1cjca2          80 --DVTV--QEL----QDAYHAVVLSYGAEDKSRPIDPSVPFDPKLGVVPNMEGRVVDVPGLYCSGWVKRGP  142 (230)
T ss_dssp             --TBCH--HHH----HHHSSEEEECCCCCEECCCCCTTSCCBTTTTBCCEETTEETTCTTEEECTHHHHCT
T ss_pred             --cccH--HHH----HhhhceEEEEeecccccccccccccccccccccccccceeecccccccccccccCc
Confidence              1000  001    12489999999986544322211111 11111111111 12467778877765543

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=97.83  E-value=5.4e-06  Score=74.97  Aligned_cols=33  Identities=33%  Similarity=0.459  Sum_probs=30.1

Q ss_pred             cCeEEEECCCHHHHHHHHHHH-----HcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFA-----KQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~-----~~g~~~~~V~lie~~   40 (433)
                      .|||+||||||+|+++|..|+     +.|++   |+|+|+.
T Consensus         7 ~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~---v~vlEr~   44 (360)
T d1pn0a1           7 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLK---VRIIDKR   44 (360)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHSTTCC---EEEECSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHhcccccCCCc---EEEEcCC
Confidence            599999999999999999996     45787   9999998

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.79  E-value=7.3e-06  Score=72.78  Aligned_cols=53  Identities=13%  Similarity=0.000  Sum_probs=37.2

Q ss_pred             CcEEeCCCCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhcc
Q 013952          276 GGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMAT  331 (433)
Q Consensus       276 g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~  331 (433)
                      +.+.++..++++.|++|++||+++....   .++.-+.+..++..|+.||+.|...
T Consensus       256 ~~iv~~~~~~~~~pgl~~~Gdaa~~v~g---~~r~G~t~g~m~~sG~~aA~~i~~~  308 (311)
T d2gjca1         256 HDVVIHSGAYAGVDNMYFAGMEVAELDG---LNRMGPTFGAMALSGVHAAEQILKH  308 (311)
T ss_dssp             HHHHHHCEECTTSTTEEECTHHHHHHHT---CCBCCSCCHHHHHHHHHHHHHHHHH
T ss_pred             CeEEECCCcEEccCCEEEEeeecCcccC---cCCccHHHHHHHHHHHHHHHHHHHH
Confidence            4466677788999999999998764321   1111145566778899999998764

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.77  E-value=8.9e-06  Score=73.61  Aligned_cols=33  Identities=36%  Similarity=0.505  Sum_probs=29.6

Q ss_pred             cCeEEEECCCHHHHHHHHHHHH----cCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAK----QGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~----~g~~~~~V~lie~~   40 (433)
                      .+||||||+|+|||+||.+|++    .|++   |+||||.
T Consensus        21 e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~---V~vieK~   57 (356)
T d1jnra2          21 ETDILIIGGGFSGCGAAYEAAYWAKLGGLK---VTLVEKA   57 (356)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTCC---EEEECSS
T ss_pred             ecCEEEECCCHHHHHHHHHHHHHHHhCcCE---EEEEeCC
Confidence            4799999999999999999986    4666   9999998

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.75  E-value=7.7e-05  Score=65.11  Aligned_cols=125  Identities=15%  Similarity=0.173  Sum_probs=80.6

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC------CCCCC----------------------------------
Q 013952          164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM------PRLFT----------------------------------  203 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~------~~~~~----------------------------------  203 (433)
                      +|+|||+|++|+-+|..|++.|.+|+++++.+...      ...+.                                  
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~~~~   83 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAGQR   83 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEETTEE
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCceEEEECHHHHHHHHHcCchHHHHhhcccccceEEEecccc
Confidence            79999999999999999999999999999875311      00011                                  


Q ss_pred             -------------------HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe-CCCc--EEECCEEEEcccCc
Q 013952          204 -------------------ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL-KDGR--TLEADIVVVGVGGR  261 (433)
Q Consensus       204 -------------------~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~-~~g~--~i~~d~vi~a~G~~  261 (433)
                                         ..+.+.+.+.+++.+..++...........+++.+ .|.+ .+|+  ++.||+||-|.|.+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~g~~~~i~a~~vVgADG~~  162 (292)
T d1k0ia1          84 RRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERP-YVTFERDGERLRLDCDYIAGCDGFH  162 (292)
T ss_dssp             EEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSC-EEEEEETTEEEEEECSEEEECCCTT
T ss_pred             cccccccccccccceeecHHHHHHHHHHHHHhCCCcEEEcceeeeeeeeccCce-EEEEecCCcEEEEEeCEEEECCCCC
Confidence                               13455566667777777777776665544233333 3443 4553  57899999999976


Q ss_pred             cChhhhhcccccCCCcEEeCCCCCCCCCCeEEcCccccccc
Q 013952          262 PLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPM  302 (433)
Q Consensus       262 p~~~~~~~~~~~~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~  302 (433)
                      ....-.   +.          .-.......+.+||+.....
T Consensus       163 S~vR~~---i~----------~~~~~~~~~~~~~~~~~~~~  190 (292)
T d1k0ia1         163 GISRQS---IP----------AERMQHGRLFLAGDAAHIVP  190 (292)
T ss_dssp             CSTGGG---SC----------GGGSEETTEEECGGGTEECC
T ss_pred             Ccccce---ee----------eccccccccccceeeeeecC
Confidence            544321   00          01112456677888765443

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.71  E-value=3.6e-06  Score=71.41  Aligned_cols=99  Identities=15%  Similarity=0.070  Sum_probs=59.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCC----------CCHHHHHHHHHHHHhcCcEEEcCCeEEEE
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL----------FTADIAAFYEGYYANKGIKIIKGTVAVGF  230 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~----------~~~~~~~~l~~~l~~~GV~v~~~~~v~~i  230 (433)
                      .+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+....          ......+.....+.+.+.....    ..+
T Consensus        48 ~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  123 (233)
T d1djqa3          48 NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLKKNKE----SQL  123 (233)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTTSTTCGGGGHHHHHHHHHHHHHHTTCTT----CEE
T ss_pred             CCceEEEEcccHHHHHHHHHHHHhccceeeEeeccccCCccccccccceeecccccchhHHHHHHHHhhccee----eee
Confidence            57899999999999999999999999999999877653211          0112223333333332221110    011


Q ss_pred             EecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh
Q 013952          231 TTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF  267 (433)
Q Consensus       231 ~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~  267 (433)
                      ..  ..+  .+...+..++.+|.+|+|||..+.....
T Consensus       124 ~~--~~~--~~~~~~~~~~~~d~vviAtG~~~~~~~~  156 (233)
T d1djqa3         124 AL--GQK--PMTADDVLQYGADKVIIATGASECTLWN  156 (233)
T ss_dssp             EC--SCC--CCCHHHHHTSCCSEEEECCCEECCHHHH
T ss_pred             ec--ccc--cccchhhhhhccceeeeccCCCcccccc
Confidence            11  110  1122222356799999999988766543

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=97.70  E-value=1.3e-05  Score=72.94  Aligned_cols=33  Identities=18%  Similarity=0.377  Sum_probs=31.5

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      .+||||||+|++|+.+|.+|+++|++   |+|+|+.
T Consensus         7 ~~dvIVVGsG~aG~v~A~rLaeaG~~---VlvLEaG   39 (370)
T d3coxa1           7 RVPALVIGSGYGGAVAALRLTQAGIP---TQIVEMG   39 (370)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCe---EEEEeCC
Confidence            58999999999999999999999998   9999987

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=97.69  E-value=0.00026  Score=62.95  Aligned_cols=31  Identities=19%  Similarity=0.342  Sum_probs=29.0

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEccC
Q 013952          164 KAVVVGGGYIGLELSAALKINNIDVSMVYPE  194 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~  194 (433)
                      .|+|||+|..|+-+|..+++.|.+|++++..
T Consensus         9 DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~   39 (330)
T d1neka2           9 DAVVIGAGGAGMRAALQISQSGQTCALLSKV   39 (330)
T ss_dssp             SCEEECCSHHHHHHHHHHHHTTCCCEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCeEEEEeCC
Confidence            5899999999999999999999999999865

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.69  E-value=8.9e-05  Score=57.73  Aligned_cols=34  Identities=18%  Similarity=0.244  Sum_probs=28.7

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ..+|||||||..|+-+|.++.++|.+.  |+++.+.
T Consensus        45 ~~kVvVIGGGdtA~D~A~~a~r~GA~~--V~vi~rr   78 (153)
T d1gtea3          45 RGAVIVLGAGDTAFDCATSALRCGARR--VFLVFRK   78 (153)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCSE--EEEECSS
T ss_pred             CCEEEEECCChhHHHHHHHHHHcCCcc--eeEEEeC
Confidence            358999999999999999999988553  7788665

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=97.65  E-value=1.9e-05  Score=71.50  Aligned_cols=33  Identities=24%  Similarity=0.563  Sum_probs=31.5

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      .||+||||+|+||..+|.+|++.|++   |+|||+.
T Consensus         2 ~YD~IIVGsG~aG~v~A~rLae~g~~---VlvLEaG   34 (360)
T d1kdga1           2 PYDYIIVGAGPGGIIAADRLSEAGKK---VLLLERG   34 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSS
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCe---EEEEEcc
Confidence            69999999999999999999999987   9999998

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=97.57  E-value=2.7e-05  Score=70.62  Aligned_cols=32  Identities=22%  Similarity=0.390  Sum_probs=30.5

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      .||||||+|++|+.+|.+|++.|++   |+|||+.
T Consensus         3 v~VIVVGsG~aG~v~A~rLaeaG~~---VlvLEaG   34 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGEAGVQ---TLMLEMG   34 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCC---EEEEESS
T ss_pred             CeEEEeCcCHHHHHHHHHHHHCcCe---EEEEecC
Confidence            4899999999999999999999998   9999997

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.47  E-value=0.00021  Score=62.93  Aligned_cols=39  Identities=18%  Similarity=0.267  Sum_probs=32.9

Q ss_pred             hcCCCcEEEECCCHHHHHHHHHHHhC--CCeEEEEccCCcc
Q 013952          159 AKKNGKAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPWC  197 (433)
Q Consensus       159 ~~~~~~v~ViG~G~~g~e~a~~l~~~--g~~V~li~~~~~~  197 (433)
                      ......|+|||+|+.|+.+|..|++.  |.+|+++++.+.+
T Consensus        47 ~~~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~   87 (311)
T d2gjca1          47 KFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP   87 (311)
T ss_dssp             HTTEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSC
T ss_pred             cccCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Confidence            33567899999999999999999864  8999999987653

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=97.46  E-value=4e-05  Score=70.15  Aligned_cols=34  Identities=29%  Similarity=0.627  Sum_probs=31.1

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcC-CCCCcEEEEcCC
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQG-VKPGELAIISKE   40 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g-~~~~~V~lie~~   40 (433)
                      ++||+||||||+||...|.+|++.+ .+   |+|||+.
T Consensus        23 ~tyD~IIVGsG~aG~vlA~rLae~~~~~---VLlLEaG   57 (391)
T d1gpea1          23 KTYDYIIAGGGLTGLTVAAKLTENPKIK---VLVIEKG   57 (391)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTSTTCC---EEEEESS
T ss_pred             CeeeEEEECcCHHHHHHHHHHHHCCCCe---EEEEcCC
Confidence            3699999999999999999999987 45   9999999

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=0.00024  Score=59.03  Aligned_cols=96  Identities=23%  Similarity=0.405  Sum_probs=62.4

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc------------------------------c-CC---CCCCH-----
Q 013952          164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPW------------------------------C-MP---RLFTA-----  204 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~------------------------------~-~~---~~~~~-----  204 (433)
                      .++|||+|+.|+++|..+++.|.+|.+++....                              . ..   ..++.     
T Consensus         5 DviIIG~GpaG~~aA~~aar~G~kV~vIEk~~~GG~c~n~g~~~~k~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (221)
T d3grsa1           5 DYLVIGGGSGGLASARRAAELGARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNWRVIKE   84 (221)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGTSCCCCCCCCHHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEeccCCCCccccchhhhhhhhhhHHHHHHHHhhhhhccccccccchhhhhhhh
Confidence            489999999999999999999999999976421                              0 00   00111     


Q ss_pred             -------HHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChh
Q 013952          205 -------DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS  265 (433)
Q Consensus       205 -------~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~  265 (433)
                             .+.....+.++..||+++.+.-...    .... ..+.. ...++.++.+++++|.+|...
T Consensus        85 ~~~~~v~~~~~~~~~~~~~~gV~~i~G~a~~~----~~~~-~~~~~-~~~~~~~~~~~iatG~~p~vp  146 (221)
T d3grsa1          85 KRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFT----SDPK-PTIEV-SGKKYTAPHILIATGGMPSTP  146 (221)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEEEESCCEEC----SCSS-CEEEE-TTEEEECSCEEECCCEEECCC
T ss_pred             hhheEEeeeccchhhhhccCceEEEEEeeeec----cccc-eeeee-eccccccceeEEecCccccCC
Confidence                   1223445567888999987643211    1111 12222 335789999999999877653

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=2.6e-05  Score=64.90  Aligned_cols=126  Identities=21%  Similarity=0.328  Sum_probs=94.4

Q ss_pred             CCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCcccc----------cCC
Q 013952            3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVC----------VGS   71 (433)
Q Consensus         3 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~   71 (433)
                      .+++++||||||++|+.+|.+|++++. ..+|++|+++ ..+|.|+.+++.++..............          ...
T Consensus         2 p~~~~~vIvG~G~aG~~~A~~Lr~~~~-~~~I~li~~e~~~py~r~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (213)
T d1m6ia1           2 PSHVPFLLIGGGTAAFAAARSIRARDP-GARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQP   80 (213)
T ss_dssp             CSEEEEEEESCSHHHHHHHHHHHHHST-TCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSC
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhcCC-CCcEEEEeCCCCCCccccccceecccccCchhhhhhhhhhcccchhhhhcCC
Confidence            356899999999999999999999886 5789999999 8999999988877654432211000000          000


Q ss_pred             ---CCCCCCHhHHHhCCcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccC
Q 013952           72 ---GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLT  129 (433)
Q Consensus        72 ---~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~  129 (433)
                         .........+++.+++++.+++|..|+.+.++|++.+|+++.||+||+|||+.|..++
T Consensus        81 ~~~~~~~~~~~~~~~~gI~~~~g~~V~~id~~~~~V~l~dG~~i~~d~lViAtG~~~~~~~  141 (213)
T d1m6ia1          81 PSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTEPNVE  141 (213)
T ss_dssp             GGGSBCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETTSCEEEEEEEEECCCEEEECCT
T ss_pred             hhhhhhhhhHHHHHHCCeEEEeCCEEEEeeccCceeeeccceeeccceEEEeeeeecchhh
Confidence               0011223345678999999999999999999999999999999999999998776544

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.39  E-value=9.8e-05  Score=62.42  Aligned_cols=34  Identities=15%  Similarity=0.173  Sum_probs=28.3

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCC---CcEEEEcCC
Q 013952            7 KYVILGGGVSAGYAAREFAKQGVKP---GELAIISKE   40 (433)
Q Consensus         7 dvvIIGgG~aGl~aA~~l~~~g~~~---~~V~lie~~   40 (433)
                      +|+|||||++||++|++|+++|++.   .+++++++.
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v~v~e~~~i~~~~   38 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADR   38 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESC
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCceEEeeeeecccC
Confidence            6999999999999999999999763   246666665

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=97.37  E-value=3.5e-05  Score=69.44  Aligned_cols=32  Identities=31%  Similarity=0.617  Sum_probs=29.3

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      .||+||||||+||+.+|.+|++. ++   |+|||+.
T Consensus        26 ~YD~IIVGsG~aG~vlA~rLae~-~k---VLvLEaG   57 (351)
T d1ju2a1          26 SYDYVIVGGGTSGCPLAATLSEK-YK---VLVLERG   57 (351)
T ss_dssp             EEEEEEECCSTTHHHHHHHHTTT-SC---EEEECSS
T ss_pred             CccEEEECccHHHHHHHHHhcCC-CC---EEEEecC
Confidence            58999999999999999999875 66   9999999

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=97.33  E-value=6.8e-05  Score=68.45  Aligned_cols=33  Identities=21%  Similarity=0.498  Sum_probs=30.2

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcC-CCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQG-VKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g-~~~~~V~lie~~   40 (433)
                      +||+||||||.||+..|.+|++.+ ++   |+|||+.
T Consensus        17 tyD~IIVGsG~aG~vlA~rLse~~~~~---VLvLEaG   50 (385)
T d1cf3a1          17 TVDYIIAGGGLTGLTTAARLTENPNIS---VLVIESG   50 (385)
T ss_dssp             EEEEEEECCSHHHHHHHHHHTTSTTCC---EEEEESS
T ss_pred             eEEEEEECcCHHHHHHHHHHHHCCCCe---EEEECCC
Confidence            599999999999999999999875 55   9999998

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=97.28  E-value=0.0015  Score=56.11  Aligned_cols=101  Identities=22%  Similarity=0.253  Sum_probs=70.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHh-CCCeEEEEccCCccCCCC------CC------------------------------
Q 013952          161 KNGKAVVVGGGYIGLELSAALKI-NNIDVSMVYPEPWCMPRL------FT------------------------------  203 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~-~g~~V~li~~~~~~~~~~------~~------------------------------  203 (433)
                      ....|+|||+|+.|+.+|..|++ .|.+|+++++.+.+....      ++                              
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  111 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKH  111 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCceeecCEEcCHHHHhhhHHHHHHHcCCceecCCccceecc
Confidence            45679999999999999999987 599999999876431100      00                              


Q ss_pred             --HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe--------------CCCcEEECCEEEEcccCcc
Q 013952          204 --ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL--------------KDGRTLEADIVVVGVGGRP  262 (433)
Q Consensus       204 --~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~--------------~~g~~i~~d~vi~a~G~~p  262 (433)
                        ..+...+.+.+++.++.+..++.+..+.. .++++..+..              .++..+.++.++.++|...
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~gv~~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~~  185 (278)
T d1rp0a1         112 AALFTSTIMSKLLARPNVKLFNAVAAEDLIV-KGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDG  185 (278)
T ss_dssp             HHHHHHHHHHHHHTSTTEEEEETEEEEEEEE-ETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSS
T ss_pred             cHHHHHHHHHHHHHhCCCEEEeCCcceeeee-cCCeEEEEEeccceeeeeecccccccceeeccceEEECcCCCc
Confidence              12334445556677888988888887765 3454444432              1235789999999999654

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=97.22  E-value=0.00073  Score=50.44  Aligned_cols=87  Identities=16%  Similarity=0.261  Sum_probs=60.9

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHh-
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE-   83 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   83 (433)
                      .++|+|||+|.+++-.|..|++...+   |+|+.+.. .+. .                          .....+.+.. 
T Consensus        30 gk~V~VvGgG~sA~~~A~~L~~~a~~---V~li~r~~-~~~-~--------------------------~~~~~~~~~~~   78 (126)
T d1fl2a2          30 GKRVAVIGGGNSGVEAAIDLAGIVEH---VTLLEFAP-EMK-A--------------------------DQVLQDKLRSL   78 (126)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTBSE---EEEECSSS-SCC-S--------------------------CHHHHHHHHTC
T ss_pred             CceEEEEeCCHHHHHHHHhhhccCCc---eEEEeccc-ccc-c--------------------------ccccccccccc
Confidence            47999999999999999999997554   99997761 000 0                          0112233333 


Q ss_pred             CCcEEEeCceEEEEECCCCE---EEeC---CC--cEEecceEEEccC
Q 013952           84 KGIELILSTEIVRADIASKT---LLSA---TG--LIFKYQILVIATG  122 (433)
Q Consensus        84 ~~v~~~~~~~v~~i~~~~~~---v~~~---~~--~~~~~d~lvlAtG  122 (433)
                      .+++++.++.+..+.-++..   +.+.   ++  +++..|.++++.|
T Consensus        79 ~~I~v~~~~~v~~i~G~~~~v~~v~l~~~~tge~~~l~vdgvFv~IG  125 (126)
T d1fl2a2          79 KNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIG  125 (126)
T ss_dssp             TTEEEESSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEECSC
T ss_pred             cceeEEcCcceEEEEccccceeeEEEEECCCCCEEEEECCEEEEEeC
Confidence            57999999999988865432   3443   23  4689999999987

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=97.15  E-value=0.0012  Score=49.15  Aligned_cols=91  Identities=15%  Similarity=0.119  Sum_probs=61.7

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      .++|+|||||-+++-.|..|.+...+   |+++-+... +. .  ..         .           ......+.....
T Consensus        27 ~k~V~VvGgGdsA~e~A~~L~~~a~~---V~li~r~~~-~~-~--~~---------~-----------~~~~~~~~~~~~   79 (126)
T d1trba2          27 NQKVAVIGGGNTAVEEALYLSNIASE---VHLIHRRDG-FR-A--EK---------I-----------LIKRLMDKVENG   79 (126)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSE---EEEECSSSS-CC-C--CH---------H-----------HHHHHHHHHHTS
T ss_pred             CCEEEEECCCHHHHHHHHHHhhcCCc---EEEEeeccc-cc-c--hh---------H-----------HHHHHHHhhccc
Confidence            57999999999999999999997655   999977710 00 0  00         0           001122333457


Q ss_pred             CcEEEeCceEEEEECCCCE---EEeCCC------cEEecceEEEccC
Q 013952           85 GIELILSTEIVRADIASKT---LLSATG------LIFKYQILVIATG  122 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~~---v~~~~~------~~~~~d~lvlAtG  122 (433)
                      ++.++.++.+..+.-++..   |++.+.      +++..|.|+++.|
T Consensus        80 ~i~~~~~~~v~~i~G~~~~v~~v~l~~~~~~e~~~~l~~dgvFv~iG  126 (126)
T d1trba2          80 NIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIG  126 (126)
T ss_dssp             SEEEECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEECSEEEECSC
T ss_pred             ceeEecceEEEEEECCCCceEEEEEEECCCCceEEEEECCEEEEEeC
Confidence            8889999889888876542   444332      4689999999877

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.13  E-value=0.0057  Score=54.32  Aligned_cols=31  Identities=19%  Similarity=0.457  Sum_probs=26.6

Q ss_pred             cEEEECCCHHHHHHHHHHHh----CCCeEEEEccC
Q 013952          164 KAVVVGGGYIGLELSAALKI----NNIDVSMVYPE  194 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~----~g~~V~li~~~  194 (433)
                      .|+|||+|..|+-+|..+++    .|.+|.+++..
T Consensus        23 DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~   57 (356)
T d1jnra2          23 DILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKA   57 (356)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCC
Confidence            79999999999888887764    68999999864

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.10  E-value=0.00018  Score=60.52  Aligned_cols=91  Identities=18%  Similarity=0.131  Sum_probs=65.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCC-------CeEEEEccCCccC--------CC-CCCHHHHHHHHHHHHhcCcEEEcCC
Q 013952          162 NGKAVVVGGGYIGLELSAALKINN-------IDVSMVYPEPWCM--------PR-LFTADIAAFYEGYYANKGIKIIKGT  225 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g-------~~V~li~~~~~~~--------~~-~~~~~~~~~l~~~l~~~GV~v~~~~  225 (433)
                      |.+|+|||+|++|+.+|..|.+.|       .+|+++++.+.+.        +. .....+.+.....+.+.|+++++++
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~~gi~p~~~~~~~~~~~~~~~~~~~g~~~~~~~   81 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNV   81 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEESC
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeeeeccCcccccchhhhhhhhhhhccCCceEEEEE
Confidence            579999999999999999999887       5799999876532        11 1234566677778889999999997


Q ss_pred             eEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccC
Q 013952          226 VAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL  263 (433)
Q Consensus       226 ~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~  263 (433)
                      .+.....          .. .-...+|.+++++|..+.
T Consensus        82 ~v~~~~~----------~~-~~~~~~~~v~~atGa~~~  108 (239)
T d1lqta2          82 VVGEHVQ----------PG-ELSERYDAVIYAVGAQSR  108 (239)
T ss_dssp             CBTTTBC----------HH-HHHHHSSEEEECCCCCEE
T ss_pred             Eeccccc----------hh-hhhccccceeeecCCCcc
Confidence            6532111          00 012358999999997653

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=96.97  E-value=0.0023  Score=46.10  Aligned_cols=75  Identities=13%  Similarity=0.162  Sum_probs=50.7

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK   84 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (433)
                      .++|+|||+|.+|+-.|..|++...+   ++++.+......                .                    ..
T Consensus        32 gK~VlVVG~g~Sa~dia~~l~~~ak~---v~~~~~r~~~~~----------------~--------------------~~   72 (107)
T d2gv8a2          32 GESVLVVGGASSANDLVRHLTPVAKH---PIYQSLLGGGDI----------------Q--------------------NE   72 (107)
T ss_dssp             TCCEEEECSSHHHHHHHHHHTTTSCS---SEEEECTTCCSC----------------B--------------------CS
T ss_pred             CCeEEEECCCCCHHHHHHHHHHhcCE---EEEEEecCcccc----------------c--------------------cc
Confidence            46899999999999999999987654   455444410000                0                    00


Q ss_pred             CcEEEeCceEEEEECCCCEEEeCCCcEEe-cceEEEc
Q 013952           85 GIELILSTEIVRADIASKTLLSATGLIFK-YQILVIA  120 (433)
Q Consensus        85 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~-~d~lvlA  120 (433)
                      ++...  ..+..+++..+.+.+.+|.++. .|++|+|
T Consensus        73 ~~~~~--~~i~~~~~~~~~v~~~dG~~~~~vD~Ii~C  107 (107)
T d2gv8a2          73 SLQQV--PEITKFDPTTREIYLKGGKVLSNIDRVIYC  107 (107)
T ss_dssp             SEEEE--CCEEEEETTTTEEEETTTEEECCCSEEEEC
T ss_pred             cceec--CCeeEEecCCCEEEEcCCCEEeCCCEEEEC
Confidence            11111  2456677888899999998876 6999876

>d1fcda2 c.3.1.5 (A:115-255) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=96.93  E-value=0.0014  Score=49.94  Aligned_cols=110  Identities=15%  Similarity=0.101  Sum_probs=71.1

Q ss_pred             cCHHHHHHHHHHHHhcC-CCcEEEEC-CC-----H----HHHHHHHHHHhCCC--eEEEEccCCccCC-CCCCHHHHHHH
Q 013952          145 REIDDADKLVEAIKAKK-NGKAVVVG-GG-----Y----IGLELSAALKINNI--DVSMVYPEPWCMP-RLFTADIAAFY  210 (433)
Q Consensus       145 ~~~~~~~~~~~~~~~~~-~~~v~ViG-~G-----~----~g~e~a~~l~~~g~--~V~li~~~~~~~~-~~~~~~~~~~l  210 (433)
                      ....+...|++.+++++ +.++++.- ++     .    .++.++..|.+.|.  ++.++...+.... ..+.+.+.+.+
T Consensus        15 ~~~~~~~~L~~~l~~~~~Gg~vv~t~p~~P~kCpgAP~e~a~l~~~~lr~~g~r~kv~i~~~~~~~~~~~~~~~~~~~~~   94 (141)
T d1fcda2          15 KAGEQTAILRKQLEDMADGGTVVIAPPAAPFRCPPGPYERASQVAYYLKAHKPMSKVIILDSSQTFSKQSQFSKGWERLY   94 (141)
T ss_dssp             SCSHHHHHHHHHHHHSCTTCCEEEECCCSSCSSTTHHHHHHHHHHHHHGGGCSCCCEEEECSCSSCTTHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHhcccCCeEEEecCCCCccCCchHHHHHHHHHHHHHHcCCCCcEEEEecCCCCccCCcccHHHHHHH
Confidence            34567889999998875 55676642 22     2    33445556666664  6777665544221 00124456667


Q ss_pred             HHHHHhcCcEEEcCCe--EEEEEecCCCcEEEEEeCCCcEEECCEEEEcc
Q 013952          211 EGYYANKGIKIIKGTV--AVGFTTNADGEVKEVKLKDGRTLEADIVVVGV  258 (433)
Q Consensus       211 ~~~l~~~GV~v~~~~~--v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~  258 (433)
                      .+.+++.||+++.+..  +.+++.  ..  ..+++.+|+++++|++.+..
T Consensus        95 ~~~~~~~~I~~~~~~~~~~v~vd~--~~--~~~~~~~Ge~v~yD~l~vvP  140 (141)
T d1fcda2          95 GFGTENAMIEWHPGPDSAVVKVDG--GE--MMVETAFGDEFKADVINLIP  140 (141)
T ss_dssp             CSTTSSCSEEEECSSTTCEEEEEE--TT--TEEEETTCCEEECSEEEECC
T ss_pred             HHHHHhcCceeeecCCceEEeecC--Cc--EEEEeCCCcEEeeeEEEeCC
Confidence            7777889999998865  555554  33  35788899999999998753

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.82  E-value=0.00069  Score=47.57  Aligned_cols=33  Identities=21%  Similarity=0.308  Sum_probs=30.3

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      .++|+|+|.|.+|+++|..|.++|.+   |++.|.+
T Consensus         5 ~K~v~ViGlG~sG~s~a~~L~~~g~~---v~~~D~~   37 (93)
T d2jfga1           5 GKNVVIIGLGLTGLSCVDFFLARGVT---PRVMDTR   37 (93)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTTCC---CEEEESS
T ss_pred             CCEEEEEeECHHHHHHHHHHHHCCCE---EEEeeCC
Confidence            46899999999999999999999987   8999887

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=96.71  E-value=0.00058  Score=60.52  Aligned_cols=37  Identities=22%  Similarity=0.267  Sum_probs=34.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC  197 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~  197 (433)
                      .+|+|+|||+|++|+-+|..|++.|.+|+++++.+.+
T Consensus        29 ~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~   65 (370)
T d2iida1          29 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERP   65 (370)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            5789999999999999999999999999999987654

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.51  E-value=0.0051  Score=45.79  Aligned_cols=87  Identities=26%  Similarity=0.286  Sum_probs=58.6

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHh
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE   83 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (433)
                      +.++|+|||||-+++-.|.+|++...+   |++|-+... +. .  .                       .....+....
T Consensus        33 rgk~V~VvGgGdsA~e~A~~L~~~a~~---V~li~r~~~-~r-a--~-----------------------~~~~~~l~~~   82 (130)
T d1vdca2          33 RNKPLAVIGGGDSAMEEANFLTKYGSK---VYIIHRRDA-FR-A--S-----------------------KIMQQRALSN   82 (130)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTTTSSE---EEEECSSSS-CC-S--C-----------------------HHHHHHHHTC
T ss_pred             CCCEEEEEcCchHHHHHHHHHhCCCCc---EEEEEeccc-cc-c--c-----------------------hhhhhccccC
Confidence            357999999999999999999987654   999977710 00 0  0                       0112333344


Q ss_pred             CCcEEEeCceEEEEECCCC-----EEEeC---CC--cEEecceEEEc
Q 013952           84 KGIELILSTEIVRADIASK-----TLLSA---TG--LIFKYQILVIA  120 (433)
Q Consensus        84 ~~v~~~~~~~v~~i~~~~~-----~v~~~---~~--~~~~~d~lvlA  120 (433)
                      .+++++.++.+..+.-+++     .+.+.   ++  +++..|.+.+|
T Consensus        83 ~nI~v~~~~~v~~i~Gd~~~~~v~~v~l~~~~tge~~~l~~dGvFVa  129 (130)
T d1vdca2          83 PKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFA  129 (130)
T ss_dssp             TTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEEC
T ss_pred             CceEEEeccEEEEEEccCCcccEEEEEEEECCCCCEEEEECCEEEEE
Confidence            6799999999988865432     23332   23  47899999887

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=96.39  E-value=0.0016  Score=57.09  Aligned_cols=38  Identities=18%  Similarity=0.288  Sum_probs=34.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC
Q 013952          162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP  199 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~  199 (433)
                      .|+|+|||+|.+|+-+|..|++.|.+|++++..+.+..
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG   39 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGG   39 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSG
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcC
Confidence            57999999999999999999999999999998876543

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=96.36  E-value=0.0025  Score=48.71  Aligned_cols=38  Identities=26%  Similarity=0.373  Sum_probs=33.5

Q ss_pred             CCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         2 m~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      |.++++|.|||+|..|.++|..|+..++ ..+++++|.+
T Consensus         2 m~~~~KI~IIGaG~VG~~~A~~l~~~~~-~~elvL~D~~   39 (146)
T d1ez4a1           2 MPNHQKVVLVGDGAVGSSYAFAMAQQGI-AEEFVIVDVV   39 (146)
T ss_dssp             BTTBCEEEEECCSHHHHHHHHHHHHHTC-CSEEEEECSS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhcCC-CcEEEEeecc
Confidence            5567899999999999999999999886 4679999977

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=96.35  E-value=0.0023  Score=49.47  Aligned_cols=38  Identities=13%  Similarity=0.267  Sum_probs=33.5

Q ss_pred             CCCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ||.++++|.|||+|..|.++|..|...++.  +++++|.+
T Consensus         3 ~~~k~~KI~IIGaG~VG~~lA~~l~~~~~~--el~L~D~~   40 (154)
T d1pzga1           3 LVQRRKKVAMIGSGMIGGTMGYLCALRELA--DVVLYDVV   40 (154)
T ss_dssp             CCSCCCEEEEECCSHHHHHHHHHHHHHTCC--EEEEECSS
T ss_pred             cccCCCcEEEECCCHHHHHHHHHHHhCCCc--eEEEEEec
Confidence            788889999999999999999999888863  59999877

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.31  E-value=0.0019  Score=57.48  Aligned_cols=63  Identities=21%  Similarity=0.269  Sum_probs=45.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCC----------------CCHHHHHHHHHHHHhcCcEEEc
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL----------------FTADIAAFYEGYYANKGIKIIK  223 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~----------------~~~~~~~~l~~~l~~~GV~v~~  223 (433)
                      +..+|+|||+|.+|+-+|..|++.|.+|++++..+++..+.                +...-...+.+.+++.|+++..
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~GGr~~t~~~~g~~~d~G~~~i~~~~~~~~~~l~~~lgl~~~~   82 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGGNPMAVVSKQVNMELAK   82 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTCCEEEETTEEEESSCCEECCSBTCHHHHHHHHHTCCEEE
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCcccEEEEEeCCEEEECCCEEECCCCCcHHHHHHHHcCCccee
Confidence            45689999999999999999999999999999877653211                1001122455667788887654

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.31  E-value=0.0014  Score=52.12  Aligned_cols=33  Identities=15%  Similarity=0.360  Sum_probs=30.9

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      .+.|+|||+|..|..+|.+|.+.|++   |+|++++
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~---V~v~dr~   34 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIK---VTVACRT   34 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCE---EEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCE---EEEEECC
Confidence            47899999999999999999999986   9999998

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.11  E-value=0.0028  Score=49.02  Aligned_cols=33  Identities=36%  Similarity=0.428  Sum_probs=30.7

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ..+|+|||+|.+|+.|+..+++.|..   |+++|.+
T Consensus        32 pa~V~ViGaGvaG~~A~~~A~~lGA~---V~~~D~~   64 (168)
T d1pjca1          32 PGKVVILGGGVVGTEAAKMAVGLGAQ---VQIFDIN   64 (168)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESC
T ss_pred             CcEEEEECCChHHHHHHHHHhhCCCE---EEEEeCc
Confidence            46899999999999999999999976   9999988

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=96.11  E-value=0.0026  Score=53.67  Aligned_cols=33  Identities=27%  Similarity=0.452  Sum_probs=31.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccC
Q 013952          162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPE  194 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~  194 (433)
                      .++|+|||+|..|+-+|..|++.|.+|+++++.
T Consensus         6 ~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~   38 (268)
T d1c0pa1           6 QKRVVVLGSGVIGLSSALILARKGYSVHILARD   38 (268)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCcEEEECccHHHHHHHHHHHHCCCCEEEEeCC
Confidence            578999999999999999999999999999875

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=96.10  E-value=0.0024  Score=55.37  Aligned_cols=34  Identities=26%  Similarity=0.447  Sum_probs=31.8

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc
Q 013952          164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC  197 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~  197 (433)
                      +|+|||+|+.|+.+|..|++.|.+|+++++.+++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~   35 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGTDAVLLESSARL   35 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence            6999999999999999999999999999987654

>d1m6ia3 d.87.1.1 (A:478-608) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.10  E-value=0.011  Score=42.43  Aligned_cols=43  Identities=19%  Similarity=0.268  Sum_probs=36.9

Q ss_pred             EEEEEeCCEEEEEEEecCChHHHHHHHHHHHcCCCCCChhhhcc
Q 013952          381 GTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLDVLKN  424 (433)
Q Consensus       381 ~~~~~~~~~l~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (433)
                      +.||+++++|+|+.+|+ --.++..+..+|..+...+|+.+++-
T Consensus        87 VIFYLrd~~VVGVLLWN-vFnrm~iAR~iI~~~~~~~DlnEvAK  129 (131)
T d1m6ia3          87 VIFYLRDKVVVGIVLWN-IFNRMPIARKIIKDGEQHEDLNEVAK  129 (131)
T ss_dssp             EEEEEETTEEEEEEEES-CCSCHHHHHHHHHHCCBCSCSTTGGG
T ss_pred             EEEEecCCcEEEEEEec-ccCccHHHHHHHHcCCccchHHHHHh
Confidence            34777999999999996 55789999999999999999887753

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.09  E-value=0.0016  Score=50.30  Aligned_cols=33  Identities=21%  Similarity=0.411  Sum_probs=30.4

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      .++++|||||..|+.-|..|.+.|.+   |+|++++
T Consensus        13 gkrvLViGgG~va~~ka~~Ll~~GA~---VtVvap~   45 (150)
T d1kyqa1          13 DKRILLIGGGEVGLTRLYKLMPTGCK---LTLVSPD   45 (150)
T ss_dssp             TCEEEEEEESHHHHHHHHHHGGGTCE---EEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCE---EEEEeCC
Confidence            57999999999999999999999976   9999877

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.07  E-value=0.003  Score=49.62  Aligned_cols=33  Identities=15%  Similarity=0.190  Sum_probs=30.4

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      .-+|+|||+|.+|+.||..+.+.|..   |+++|.+
T Consensus        29 pa~VvViGaGvaG~~Aa~~A~~lGA~---V~v~D~~   61 (183)
T d1l7da1          29 PARVLVFGVGVAGLQAIATAKRLGAV---VMATDVR   61 (183)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSC
T ss_pred             CcEEEEEcCcHHHHHHHHHHHHcCCE---EEEEecc
Confidence            45899999999999999999999976   9999988

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.04  E-value=0.011  Score=42.75  Aligned_cols=34  Identities=15%  Similarity=0.246  Sum_probs=31.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccC
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE  194 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~  194 (433)
                      .+++++|||+|.+|..-+..|.+.|.+|+++.+.
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~   44 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALT   44 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            5899999999999999999999999999998654

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=95.91  E-value=0.0038  Score=49.70  Aligned_cols=32  Identities=22%  Similarity=0.216  Sum_probs=29.8

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      +++.|||+|..|++.|..|+++|++   |.+++++
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~---V~~~~r~   33 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQS---VLAWDID   33 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCE---EEEECSC
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCE---EEEEECC
Confidence            5899999999999999999999987   9999887

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=95.83  E-value=0.0056  Score=42.62  Aligned_cols=80  Identities=14%  Similarity=0.144  Sum_probs=54.6

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEE
Q 013952          160 KKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVK  239 (433)
Q Consensus       160 ~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~  239 (433)
                      +++|+++|+|.|-+|+.+|.+|.+.|.+|++.+........           +.+ +.++.++++..             
T Consensus         3 ~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~~~-----------~~~-~~~~~~~~~~~-------------   57 (93)
T d2jfga1           3 YQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGL-----------DKL-PEAVERHTGSL-------------   57 (93)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCTTG-----------GGS-CTTSCEEESBC-------------
T ss_pred             cCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCchhH-----------HHH-hhccceeeccc-------------
Confidence            36899999999999999999999999999999875432210           111 22344333210             


Q ss_pred             EEEeCCCcEEECCEEEEcccCccChhhhh
Q 013952          240 EVKLKDGRTLEADIVVVGVGGRPLISLFK  268 (433)
Q Consensus       240 ~v~~~~g~~i~~d~vi~a~G~~p~~~~~~  268 (433)
                          .....-.+|.+|+++|..++.+++.
T Consensus        58 ----~~~~~~~~d~vi~SPGi~~~~~~~~   82 (93)
T d2jfga1          58 ----NDEWLMAADLIVASPGIALAHPSLS   82 (93)
T ss_dssp             ----CHHHHHHCSEEEECTTSCTTSHHHH
T ss_pred             ----chhhhccCCEEEECCCCCCCCHHHH
Confidence                0001235799999999988887664

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.81  E-value=0.003  Score=48.60  Aligned_cols=34  Identities=26%  Similarity=0.539  Sum_probs=31.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccC
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE  194 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~  194 (433)
                      .+|+++|||||.+|.+-+..|.+.|.+|+++.+.
T Consensus        12 ~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1          12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            5899999999999999999999999999999654

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.81  E-value=0.0048  Score=46.22  Aligned_cols=31  Identities=19%  Similarity=0.315  Sum_probs=29.5

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         7 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      +|+|+|+|.-|...|..|.+.|++   |+++|++
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~---v~vid~d   32 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHD---IVLIDID   32 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCE---EEEEESC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCC---cceecCC
Confidence            799999999999999999999987   9999998

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=95.62  E-value=0.0058  Score=45.82  Aligned_cols=32  Identities=16%  Similarity=0.366  Sum_probs=30.0

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ++++|||.|..|...|..|.+.|.+   |+++|++
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~---vvvid~d   32 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHE---VLAVDIN   32 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCC---CEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCe---EEEecCc
Confidence            4799999999999999999999988   9999998

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.52  E-value=0.0054  Score=53.14  Aligned_cols=36  Identities=22%  Similarity=0.231  Sum_probs=32.8

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC
Q 013952          164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP  199 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~  199 (433)
                      .++|||+|++|+-+|..|++.|.+|++++..+.+..
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG   38 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGG   38 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSG
T ss_pred             cEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCccc
Confidence            589999999999999999999999999999877644

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.44  E-value=0.0083  Score=48.11  Aligned_cols=35  Identities=17%  Similarity=0.338  Sum_probs=31.9

Q ss_pred             CCCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ||  ..+|.|||+|.-|...|..+++.|++   |+++|.+
T Consensus         2 ~~--IkkvaViGaG~mG~~iA~~~a~~G~~---V~l~D~~   36 (192)
T d1f0ya2           2 II--VKHVTVIGGGLMGAGIAQVAAATGHT---VVLVDQT   36 (192)
T ss_dssp             CC--CCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSC
T ss_pred             ce--eEEEEEECcCHHHHHHHHHHHhCCCc---EEEEECC
Confidence            55  46899999999999999999999998   9999988

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=95.37  E-value=0.0062  Score=53.94  Aligned_cols=36  Identities=19%  Similarity=0.295  Sum_probs=31.2

Q ss_pred             cEEEECCCHHHHHHHHHHH-----hCCCeEEEEccCCccCC
Q 013952          164 KAVVVGGGYIGLELSAALK-----INNIDVSMVYPEPWCMP  199 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~-----~~g~~V~li~~~~~~~~  199 (433)
                      .|+|||+|++|+-+|..|+     +.|.+|+++++.+.+..
T Consensus         9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~~   49 (360)
T d1pn0a1           9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVY   49 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCC
T ss_pred             CEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCCc
Confidence            6899999999999999996     57999999998766543

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.30  E-value=0.014  Score=44.44  Aligned_cols=39  Identities=21%  Similarity=0.432  Sum_probs=32.8

Q ss_pred             CCCC-cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            1 MAEK-SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         1 Mm~~-~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      |+++ ..+|.|||+|..|.++|+.|...++ ..+++|+|..
T Consensus         1 m~~~~~~KI~IiGaG~vG~~~a~~l~~~~l-~~el~L~Di~   40 (148)
T d1ldna1           1 MKNNGGARVVVIGAGFVGASYVFALMNQGI-ADEIVLIDAN   40 (148)
T ss_dssp             CTTTTSCEEEEECCSHHHHHHHHHHHHHTC-CSEEEEECSS
T ss_pred             CCCCCCCeEEEECcCHHHHHHHHHHHhcCC-CceEEEEeec
Confidence            4433 4789999999999999999999886 5679999876

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.26  E-value=0.01  Score=42.98  Aligned_cols=33  Identities=27%  Similarity=0.400  Sum_probs=30.2

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      .++|+|||+|..|..-|..|.+.|.+   |+++++.
T Consensus        12 ~k~vlVvG~G~va~~ka~~ll~~ga~---v~v~~~~   44 (113)
T d1pjqa1          12 DRDCLIVGGGDVAERKARLLLEAGAR---LTVNALT   44 (113)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBE---EEEEESS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCe---EEEEecc
Confidence            57999999999999999999998876   9999877

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=95.14  E-value=0.01  Score=49.60  Aligned_cols=33  Identities=21%  Similarity=0.295  Sum_probs=30.7

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc
Q 013952          164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPW  196 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~  196 (433)
                      .|+|||+|+.|+.+|..|++.|.+|+++++.+.
T Consensus         4 DViIIGaG~aGl~aA~~la~~G~~V~liEk~~~   36 (251)
T d2i0za1           4 DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNK   36 (251)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            589999999999999999999999999998754

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=95.10  E-value=0.011  Score=49.61  Aligned_cols=35  Identities=20%  Similarity=0.230  Sum_probs=31.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC  197 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~  197 (433)
                      ..|+|||+|+.|+.+|..|++.|.+|+++++.+.+
T Consensus         5 ~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~   39 (253)
T d2gqfa1           5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKI   39 (253)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            47999999999999999999999999999987643

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.08  E-value=0.0094  Score=52.66  Aligned_cols=61  Identities=20%  Similarity=0.198  Sum_probs=43.5

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCC--------C--C------HHHHHHHHHHHHhcCcEEEcC
Q 013952          164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL--------F--T------ADIAAFYEGYYANKGIKIIKG  224 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~--------~--~------~~~~~~l~~~l~~~GV~v~~~  224 (433)
                      .|+|||+|..|+-+|..|++.|.+|+++++.+++..+.        .  +      ......+.+.+++.|++....
T Consensus         1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~GGr~~t~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~   77 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILRLAKELGLETYKV   77 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHTTCCEEEEESSSSSBTTCCEECCTTTSCEESSCCEECTTCHHHHHHHHHTTCCEEEC
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcceeeEEECCCCcEEeCCceEeCCCChHHHHHHHHcCCcceec
Confidence            37999999999999999999999999999876542110        0  0      011234566778888876543

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=95.04  E-value=0.012  Score=45.85  Aligned_cols=31  Identities=23%  Similarity=0.233  Sum_probs=29.3

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         7 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      +|+|||+|.-|...|..|++.|++   |+++++.
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~~---V~~~~r~   32 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGHE---VQGWLRV   32 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCE---EEEECSS
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCc---eEEEEcC
Confidence            799999999999999999999987   9999887

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=94.97  E-value=0.011  Score=50.10  Aligned_cols=32  Identities=31%  Similarity=0.500  Sum_probs=30.0

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Q 013952          164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEP  195 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~  195 (433)
                      .|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            49999999999999999999999999999864

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.97  E-value=0.0084  Score=48.06  Aligned_cols=36  Identities=19%  Similarity=0.276  Sum_probs=32.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc
Q 013952          162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC  197 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~  197 (433)
                      -++|.|||+|..|..+|..++..|.+|+++++.+..
T Consensus         4 IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~   39 (192)
T d1f0ya2           4 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDI   39 (192)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred             eEEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHH
Confidence            479999999999999999999999999999876543

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=94.95  E-value=0.014  Score=42.11  Aligned_cols=34  Identities=21%  Similarity=0.342  Sum_probs=30.1

Q ss_pred             CcCeEEEECCCH-----------HHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            4 KSFKYVILGGGV-----------SAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         4 ~~~dvvIIGgG~-----------aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ..++|+|||+||           ++..|+++|++.|++   ++++..+
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~---~IliN~N   47 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYE---TIMVNCN   47 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCE---EEEECCC
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCe---EEEEecC
Confidence            457899999994           788899999999998   8999988

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=94.94  E-value=0.073  Score=43.48  Aligned_cols=33  Identities=21%  Similarity=0.318  Sum_probs=26.9

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      .++|+|||+|.+|.-+|..+++.+.+   ++++-+.
T Consensus        32 gK~V~VvG~G~Sa~dia~~~~~~~~~---~~~~~~~   64 (235)
T d1w4xa2          32 GQRVGVIGTGSSGIQVSPQIAKQAAE---LFVFQRT   64 (235)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHBSE---EEEEESS
T ss_pred             CCEEEEECCCccHHHHHHHHHhhhcc---ccccccc
Confidence            47899999999999999999998765   5555444

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=94.73  E-value=0.0092  Score=47.68  Aligned_cols=33  Identities=18%  Similarity=0.183  Sum_probs=29.3

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      +.+|+|||+|.-|.+.|..|++.|.+   |++..++
T Consensus         7 m~KI~ViGaG~wGtAlA~~La~~g~~---V~l~~r~   39 (189)
T d1n1ea2           7 LNKAVVFGSGAFGTALAMVLSKKCRE---VCVWHMN   39 (189)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTEEE---EEEECSC
T ss_pred             eceEEEECCCHHHHHHHHHHHHcCCe---EEEEEec
Confidence            46899999999999999999998876   8888776

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=94.54  E-value=0.015  Score=45.78  Aligned_cols=33  Identities=15%  Similarity=0.309  Sum_probs=31.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccC
Q 013952          162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPE  194 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~  194 (433)
                      .|+|+|+|+|.+|..+|..|.+.|.+|++++|.
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~   34 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRT   34 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECC
Confidence            589999999999999999999999999999875

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=94.54  E-value=0.0086  Score=47.74  Aligned_cols=35  Identities=17%  Similarity=0.171  Sum_probs=31.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc
Q 013952          162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW  196 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~  196 (433)
                      -++|.|||+|.+|..+|..++..|.+|+++++.+.
T Consensus         4 I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~   38 (186)
T d1wdka3           4 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEH   38 (186)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            57999999999999999999999999999987644

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=94.41  E-value=0.02  Score=49.44  Aligned_cols=32  Identities=22%  Similarity=0.555  Sum_probs=29.2

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCC-eEEEEccCC
Q 013952          164 KAVVVGGGYIGLELSAALKINNI-DVSMVYPEP  195 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g~-~V~li~~~~  195 (433)
                      +|+|||+|.+|+-+|..|++.|. +|+++++.+
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            69999999999999999999995 799998764

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=94.39  E-value=0.019  Score=48.77  Aligned_cols=32  Identities=22%  Similarity=0.358  Sum_probs=29.9

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Q 013952          164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEP  195 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~  195 (433)
                      .|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus         5 DvvIIGaGi~Gls~A~~La~~G~~V~viE~~~   36 (281)
T d2gf3a1           5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD   36 (281)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            48999999999999999999999999998864

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=94.26  E-value=0.03  Score=42.34  Aligned_cols=34  Identities=26%  Similarity=0.317  Sum_probs=30.0

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ++|.|||+|..|.++|..|..++. ..++.|+|.+
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~-~~elvL~Di~   35 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGV-ADDYVFIDAN   35 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTC-CSEEEEECSS
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCC-CceEEEEecc
Confidence            589999999999999999999886 4579999877

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=94.22  E-value=0.028  Score=39.03  Aligned_cols=37  Identities=11%  Similarity=0.073  Sum_probs=30.8

Q ss_pred             CCCCcCeEEEECCCHHHHHH-HHHHHHcCCCCCcEEEEcCC
Q 013952            1 MAEKSFKYVILGGGVSAGYA-AREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         1 Mm~~~~dvvIIGgG~aGl~a-A~~l~~~g~~~~~V~lie~~   40 (433)
                      ||...+++-+||-|-+|+++ |..|.++|+.   |+--|..
T Consensus         4 ~~~~~~~ihfiGigG~GMs~LA~~L~~~G~~---VsGSD~~   41 (96)
T d1p3da1           4 EMRRVQQIHFIGIGGAGMSGIAEILLNEGYQ---ISGSDIA   41 (96)
T ss_dssp             CCTTCCEEEEETTTSTTHHHHHHHHHHHTCE---EEEEESC
T ss_pred             cchhCCEEEEEEECHHHHHHHHHHHHhCCCE---EEEEeCC
Confidence            56667899999999999998 8999999987   7666554

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=94.19  E-value=0.043  Score=42.07  Aligned_cols=35  Identities=20%  Similarity=0.219  Sum_probs=31.6

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      +.+|.|||+|..|-++|+.|...++ ..++.|+|..
T Consensus        20 ~~KV~IIGaG~VG~~~A~~l~~~~l-~~ElvLiD~~   54 (160)
T d1i0za1          20 NNKITVVGVGQVGMACAISILGKSL-ADELALVDVL   54 (160)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCC-CcEEEEEEec
Confidence            5699999999999999999999987 5679999877

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.15  E-value=0.02  Score=46.23  Aligned_cols=31  Identities=16%  Similarity=0.229  Sum_probs=29.2

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         7 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      +|.|||.|..|+..|..|++.|++   |+.+|.+
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~---V~g~D~n   32 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHE---VIGVDVS   32 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCE---EEEECSC
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCc---EEEEeCC
Confidence            699999999999999999999987   9999987

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=94.07  E-value=0.023  Score=44.89  Aligned_cols=32  Identities=22%  Similarity=0.153  Sum_probs=30.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccC
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPE  194 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~  194 (433)
                      |++.|||+|..|.-+|..|++.|.+|+++.+.
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~   33 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDID   33 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECC
Confidence            68999999999999999999999999999764

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.90  E-value=0.041  Score=42.19  Aligned_cols=35  Identities=23%  Similarity=0.331  Sum_probs=30.9

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ..+|.|||+|..|-++|+.|...++ ..++.|+|.+
T Consensus        19 ~~KI~IIGaG~VG~~~A~~l~~~~l-~~elvL~D~~   53 (159)
T d2ldxa1          19 RCKITVVGVGDVGMACAISILLKGL-ADELALVDAD   53 (159)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTS-CSEEEEECSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCC-CCEEEEEeCC
Confidence            4589999999999999999999886 5679999877

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=93.85  E-value=0.035  Score=42.91  Aligned_cols=33  Identities=27%  Similarity=0.225  Sum_probs=30.6

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc
Q 013952          164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPW  196 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~  196 (433)
                      +|+|+|+|.+|.-+|..|.+.|.+|+++.|.+.
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~   34 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence            789999999999999999999999999988653

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=93.59  E-value=0.042  Score=42.64  Aligned_cols=35  Identities=26%  Similarity=0.404  Sum_probs=30.0

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      +.++|+|||+|-++.+++..|.+.|.+.  |+|+.++
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~--I~I~nR~   50 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEK--LKIYARN   50 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCC--EEEECSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCE--EEEeccc
Confidence            3568999999999999999999998643  8888776

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=93.54  E-value=0.04  Score=43.67  Aligned_cols=33  Identities=21%  Similarity=0.312  Sum_probs=30.4

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ..+|.|||+|.-|...|..+++.|++   |+++|.+
T Consensus         4 I~~vaViGaG~mG~~iA~~~a~~G~~---V~l~D~~   36 (186)
T d1wdka3           4 VKQAAVLGAGIMGGGIAYQSASKGTP---ILMKDIN   36 (186)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHHTTCC---EEEECSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCe---EEEEECC
Confidence            46799999999999999999999998   9999988

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=93.53  E-value=0.057  Score=40.54  Aligned_cols=34  Identities=21%  Similarity=0.334  Sum_probs=30.2

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      .+|.|||+|..|.++|..|..+++ ..+++|+|.+
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l-~~ElvL~D~~   35 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGI-AREIVLEDIA   35 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCC-CcEEEEEEec
Confidence            479999999999999999999887 5679999876

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=93.52  E-value=0.05  Score=41.39  Aligned_cols=34  Identities=32%  Similarity=0.476  Sum_probs=30.6

Q ss_pred             CcCeEEEEC-CCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            4 KSFKYVILG-GGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         4 ~~~dvvIIG-gG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ...+|.||| .|.-|.+.|..|++.|++   |+++|+.
T Consensus         8 ~~~kI~iIGg~G~mG~~la~~L~~~G~~---V~~~d~~   42 (152)
T d2pv7a2           8 DIHKIVIVGGYGKLGGLFARYLRASGYP---ISILDRE   42 (152)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHHTTTCC---EEEECTT
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHHcCCC---cEecccc
Confidence            346999999 699999999999999998   9998877

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=93.51  E-value=0.037  Score=47.72  Aligned_cols=32  Identities=28%  Similarity=0.419  Sum_probs=30.1

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Q 013952          164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEP  195 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~  195 (433)
                      .|+|||+|..|+-+|..|++.|.+|.++++.+
T Consensus        18 DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~   49 (308)
T d1y0pa2          18 DVVVVGSGGAGFSAAISATDSGAKVILIEKEP   49 (308)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            69999999999999999999999999998764

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.41  E-value=0.036  Score=36.60  Aligned_cols=34  Identities=26%  Similarity=0.175  Sum_probs=30.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW  196 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~  196 (433)
                      |+|.|+|+|..|..++....++|.++.++++.+.
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~   35 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE   35 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence            5799999999999999999999999999987643

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=93.37  E-value=0.058  Score=40.49  Aligned_cols=34  Identities=29%  Similarity=0.316  Sum_probs=30.2

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      .+|.|||+|..|.++|..|...++ ..++.|+|..
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l-~~el~L~D~~   35 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQT-ANELVLIDVF   35 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTC-SSEEEEECCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCC-CCEEEEEecc
Confidence            479999999999999999999886 5679999977

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.37  E-value=0.055  Score=40.63  Aligned_cols=33  Identities=18%  Similarity=0.136  Sum_probs=29.4

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         7 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      +|.|||+|..|.++|..|+..+. ..+++|+|.+
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~~-~~elvL~Di~   34 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLNLD-VDEIALVDIA   34 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSC-CSEEEEECSS
T ss_pred             EEEEECcCHHHHHHHHHHHhcCc-CceEEEEecc
Confidence            79999999999999999998886 4679999876

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=93.29  E-value=0.062  Score=40.35  Aligned_cols=33  Identities=21%  Similarity=0.361  Sum_probs=29.4

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         7 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      +|.|||+|..|.+.|..|...++ ..+++|+|.+
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l-~~el~L~Di~   34 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQL-ARELVLLDVV   34 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCC-CceEEEeccc
Confidence            69999999999999999999886 4579999877

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.18  E-value=0.11  Score=38.23  Aligned_cols=30  Identities=20%  Similarity=0.372  Sum_probs=28.4

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEcc
Q 013952          164 KAVVVGGGYIGLELSAALKINNIDVSMVYP  193 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~  193 (433)
                      +|+|+|.|..|..++..|.+.|.+|++++.
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~   31 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDI   31 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcceecC
Confidence            689999999999999999999999999975

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.17  E-value=0.067  Score=38.15  Aligned_cols=33  Identities=21%  Similarity=0.345  Sum_probs=30.8

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ..+|.|||||--|.+.|..+++.|++   +.++|++
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~lG~~---v~v~d~~   43 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQRLGVE---VIAVDRY   43 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTTTCE---EEEEESS
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHCCCE---EEEEcCC
Confidence            46899999999999999999999998   9999988

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=93.16  E-value=0.052  Score=42.24  Aligned_cols=33  Identities=9%  Similarity=0.243  Sum_probs=29.4

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      .++|+|+|+|-++-+++..|.+.|.+   |+|+.++
T Consensus        18 ~k~vlIlGaGGaarai~~al~~~g~~---i~I~nRt   50 (170)
T d1nyta1          18 GLRILLIGAGGASRGVLLPLLSLDCA---VTITNRT   50 (170)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSS
T ss_pred             CCEEEEECCcHHHHHHHHHhcccceE---EEeccch
Confidence            47899999999999999999998864   8998777

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.74  E-value=0.078  Score=39.66  Aligned_cols=33  Identities=24%  Similarity=0.318  Sum_probs=29.2

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         7 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      +|.|||+|..|.++|..|...++ ..+++|+|.+
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l-~~el~L~Di~   34 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGF-AREMVLIDVD   34 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTC-CSEEEEECSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCC-CCEEEEEecc
Confidence            79999999999999999998886 4579999876

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=92.73  E-value=0.053  Score=47.95  Aligned_cols=33  Identities=24%  Similarity=0.236  Sum_probs=30.5

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc
Q 013952          164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPW  196 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~  196 (433)
                      .|+|||+|..|+-+|..|++.|.+|.+++++..
T Consensus         4 ~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~   36 (367)
T d1n4wa1           4 PAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQL   36 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             eEEEeCcCHHHHHHHHHHHHCcCeEEEEecCCC
Confidence            489999999999999999999999999998754

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=92.65  E-value=0.054  Score=46.99  Aligned_cols=33  Identities=24%  Similarity=0.410  Sum_probs=30.5

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc
Q 013952          164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPW  196 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~  196 (433)
                      .|+|||+|..|+-+|..|++.|.+|.++++.+.
T Consensus        25 DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~   57 (322)
T d1d4ca2          25 DVVIIGSGGAGLAAAVSARDAGAKVILLEKEPI   57 (322)
T ss_dssp             SEEEECSSHHHHHHHHHHHTTTCCEEEECSSSS
T ss_pred             eEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            699999999999999999999999999997643

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=92.45  E-value=0.051  Score=40.29  Aligned_cols=77  Identities=17%  Similarity=0.192  Sum_probs=49.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEE
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVK  242 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~  242 (433)
                      |+++|+|.|..|..+|..|.+.|.+|++++.         +++..+.    +++.|..++.+..       .+..+  +.
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~---------d~~~~~~----~~~~~~~~~~gd~-------~~~~~--l~   58 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDI---------NEEKVNA----YASYATHAVIANA-------TEENE--LL   58 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEES---------CHHHHHH----TTTTCSEEEECCT-------TCTTH--HH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecC---------cHHHHHH----HHHhCCcceeeec-------ccchh--hh
Confidence            5789999999999999999999999999975         3443332    3456655443311       01100  00


Q ss_pred             eCCCcEEECCEEEEcccCccC
Q 013952          243 LKDGRTLEADIVVVGVGGRPL  263 (433)
Q Consensus       243 ~~~g~~i~~d~vi~a~G~~p~  263 (433)
                       .-+ .-.+|.++++++....
T Consensus        59 -~a~-i~~a~~vi~~~~~~~~   77 (134)
T d2hmva1          59 -SLG-IRNFEYVIVAIGANIQ   77 (134)
T ss_dssp             -HHT-GGGCSEEEECCCSCHH
T ss_pred             -ccC-CccccEEEEEcCchHH
Confidence             011 2358999999986543

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.34  E-value=0.067  Score=47.68  Aligned_cols=34  Identities=29%  Similarity=0.458  Sum_probs=30.9

Q ss_pred             cEEEECCCHHHHHHHHHHHh------CCCeEEEEccCCcc
Q 013952          164 KAVVVGGGYIGLELSAALKI------NNIDVSMVYPEPWC  197 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~------~g~~V~li~~~~~~  197 (433)
                      .|+|||+|+.|+-+|..|++      .|.+|.++++...+
T Consensus        34 DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~p   73 (380)
T d2gmha1          34 DVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHI   73 (380)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSST
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCC
Confidence            79999999999999999987      79999999987654

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=92.33  E-value=0.066  Score=47.38  Aligned_cols=33  Identities=27%  Similarity=0.306  Sum_probs=30.3

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc
Q 013952          164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPW  196 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~  196 (433)
                      .++|||+|..|+-+|..|++.|.+|.+++++..
T Consensus         9 dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~   41 (370)
T d3coxa1           9 PALVIGSGYGGAVAALRLTQAGIPTQIVEMGRS   41 (370)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            579999999999999999999999999998643

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.31  E-value=0.081  Score=39.79  Aligned_cols=33  Identities=30%  Similarity=0.414  Sum_probs=28.6

Q ss_pred             eEEEECC-CHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            7 KYVILGG-GVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         7 dvvIIGg-G~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      +|.|||+ |..|.++|..|...++ ..++.|+|..
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l-~~el~L~D~~   35 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPF-MKDLVLIGRE   35 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTT-CCEEEEEECG
T ss_pred             EEEEECCCChHHHHHHHHHHhCCc-ccccccccch
Confidence            6999996 9999999999999886 3569999876

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=92.18  E-value=0.11  Score=36.94  Aligned_cols=35  Identities=17%  Similarity=0.233  Sum_probs=31.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc
Q 013952          162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW  196 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~  196 (433)
                      ..++.|+|+|..|..++....++|.++.++++.+.
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~   45 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD   45 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            45799999999999999999999999999987643

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=92.15  E-value=0.099  Score=37.92  Aligned_cols=33  Identities=21%  Similarity=0.393  Sum_probs=29.5

Q ss_pred             cCeEEEECCCH-----------HHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGV-----------SAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~-----------aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      .++|+|||+||           ++..|+.+|++.|++   ++++..+
T Consensus         7 ~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~---~iliN~N   50 (127)
T d1a9xa3           7 IKSILILGAGPIVIGQACEFDYSGAQACKALREEGYR---VINVNSN   50 (127)
T ss_dssp             CCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCE---EEEECSC
T ss_pred             CCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCe---EEEecCc
Confidence            47999999986           688899999999998   9999888

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=92.14  E-value=0.29  Score=33.06  Aligned_cols=73  Identities=26%  Similarity=0.193  Sum_probs=50.5

Q ss_pred             CcEEEECCCHHHH-HHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEE
Q 013952          163 GKAVVVGGGYIGL-ELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEV  241 (433)
Q Consensus       163 ~~v~ViG~G~~g~-e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v  241 (433)
                      .++-+||-|-+|+ -+|..|.+.|.+|+--+..+       .+     ..+.|++.|++++.+.....+           
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~-------~~-----~t~~L~~~Gi~i~~gh~~~~i-----------   58 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEE-------TE-----RTAYLRKLGIPIFVPHSADNW-----------   58 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSC-------CH-----HHHHHHHTTCCEESSCCTTSC-----------
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCC-------Ch-----hHHHHHHCCCeEEeeeccccc-----------
Confidence            3677888776666 46899999999999887542       22     234589999999866432111           


Q ss_pred             EeCCCcEEECCEEEEcccCccChh
Q 013952          242 KLKDGRTLEADIVVVGVGGRPLIS  265 (433)
Q Consensus       242 ~~~~g~~i~~d~vi~a~G~~p~~~  265 (433)
                             -.+|.||+......+..
T Consensus        59 -------~~~d~vV~SsAI~~~np   75 (89)
T d1j6ua1          59 -------YDPDLVIKTPAVRDDNP   75 (89)
T ss_dssp             -------CCCSEEEECTTCCTTCH
T ss_pred             -------CCCCEEEEecCcCCCCH
Confidence                   23789999888765544

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.14  E-value=0.068  Score=41.96  Aligned_cols=31  Identities=23%  Similarity=0.310  Sum_probs=27.7

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         7 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      +|.|||+|.-|.+.|..|++.|.+   |++..+.
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~~---V~l~~r~   32 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGNE---VRIWGTE   32 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCE---EEEECCG
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCE---EEEEEec
Confidence            799999999999999999999876   8887653

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=92.12  E-value=0.079  Score=40.82  Aligned_cols=31  Identities=23%  Similarity=0.339  Sum_probs=28.3

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         7 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      +|.|||.|.-|.+.|+.|+++|++   |+++|++
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~---V~~~d~~   32 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHY---LIGVSRQ   32 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCE---EEEECSC
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCE---EEEEECC
Confidence            699999999999999999999987   8888776

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=92.08  E-value=0.068  Score=46.52  Aligned_cols=32  Identities=25%  Similarity=0.495  Sum_probs=29.5

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Q 013952          164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEP  195 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~  195 (433)
                      .|+|||+|+.|+-+|..+++.|.+|.+++..+
T Consensus         7 DVvVIG~G~AGl~AAl~aa~~G~~V~liEK~~   38 (336)
T d2bs2a2           7 DSLVIGGGLAGLRAAVATQQKGLSTIVLSLIP   38 (336)
T ss_dssp             SEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            59999999999999999999999999998753

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.98  E-value=0.08  Score=39.78  Aligned_cols=33  Identities=15%  Similarity=0.165  Sum_probs=28.8

Q ss_pred             eEEEECC-CHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            7 KYVILGG-GVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         7 dvvIIGg-G~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      +|.|||| |..|.++|..|+..++ ..++.++|.+
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~-~~elvLiDi~   35 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPL-VSRLTLYDIA   35 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTT-CSEEEEEESS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCc-cceEEEEecc
Confidence            6999996 9999999999999886 4679999876

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=91.96  E-value=0.08  Score=46.71  Aligned_cols=34  Identities=26%  Similarity=0.251  Sum_probs=31.2

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc
Q 013952          164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC  197 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~  197 (433)
                      .++|||+|..|+-+|..|++.|.+|.++++++..
T Consensus         6 DviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~~   39 (379)
T d2f5va1           6 DVVIVGSGPIGCTYARELVGAGYKVAMFDIGEID   39 (379)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred             cEEEECcCHHHHHHHHHHhhCCCeEEEEecCCCC
Confidence            5899999999999999999999999999987654

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=91.85  E-value=0.096  Score=39.22  Aligned_cols=33  Identities=18%  Similarity=0.297  Sum_probs=28.8

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      .+|.|||+|..|.++|..|+..++.  ++.++|..
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~--dl~l~D~~   34 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELG--DIVLLDIV   34 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCS--EEEEECSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcc--eEEEEeec
Confidence            5899999999999999999988763  58999876

>d1fcda2 c.3.1.5 (A:115-255) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=91.83  E-value=0.067  Score=40.09  Aligned_cols=40  Identities=20%  Similarity=0.190  Sum_probs=33.6

Q ss_pred             HHhCCcEEEeCc--eEEEEECCCCEEEeCCCcEEecceEEEc
Q 013952           81 YKEKGIELILST--EIVRADIASKTLLSATGLIFKYQILVIA  120 (433)
Q Consensus        81 ~~~~~v~~~~~~--~v~~i~~~~~~v~~~~~~~~~~d~lvlA  120 (433)
                      +++.+++++.+.  .+..+|...+.+.+.+|+++.||.+.+-
T Consensus        98 ~~~~~I~~~~~~~~~~v~vd~~~~~~~~~~Ge~v~yD~l~vv  139 (141)
T d1fcda2          98 TENAMIEWHPGPDSAVVKVDGGEMMVETAFGDEFKADVINLI  139 (141)
T ss_dssp             TSSCSEEEECSSTTCEEEEEETTTEEEETTCCEEECSEEEEC
T ss_pred             HHhcCceeeecCCceEEeecCCcEEEEeCCCcEEeeeEEEeC
Confidence            456789999764  5788999999999999999999999863

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=91.80  E-value=0.28  Score=36.98  Aligned_cols=81  Identities=11%  Similarity=0.086  Sum_probs=51.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEE
Q 013952          162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEV  241 (433)
Q Consensus       162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v  241 (433)
                      ..+++|+|.|..|..++..|.+.|.+|++++..         ++-.....+.+...|+.++.+..-.       .   .+
T Consensus         3 knHiII~G~g~~g~~l~~~L~~~~~~v~vId~d---------~~~~~~~~~~~~~~~~~vi~Gd~~d-------~---~~   63 (153)
T d1id1a_           3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNL---------PEDDIKQLEQRLGDNADVIPGDSND-------S---SV   63 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECC---------CHHHHHHHHHHHCTTCEEEESCTTS-------H---HH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEecc---------chhHHHHHHHhhcCCcEEEEccCcc-------h---HH
Confidence            358999999999999999999999999998743         2222233334456688877653210       0   00


Q ss_pred             EeCCCcEEECCEEEEcccCcc
Q 013952          242 KLKDGRTLEADIVVVGVGGRP  262 (433)
Q Consensus       242 ~~~~g~~i~~d~vi~a~G~~p  262 (433)
                      .-.-| .-+||.+|++++...
T Consensus        64 L~~a~-i~~a~~vi~~~~~d~   83 (153)
T d1id1a_          64 LKKAG-IDRCRAILALSDNDA   83 (153)
T ss_dssp             HHHHT-TTTCSEEEECSSCHH
T ss_pred             HHHhc-cccCCEEEEccccHH
Confidence            00001 124899999887643

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=91.69  E-value=0.07  Score=46.15  Aligned_cols=33  Identities=33%  Similarity=0.505  Sum_probs=30.2

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc
Q 013952          164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPW  196 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~  196 (433)
                      .|+|||+|..|+-+|..+++.|.+|.++++.+.
T Consensus        21 DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~   53 (317)
T d1qo8a2          21 QVLVVGAGSAGFNASLAAKKAGANVILVDKAPF   53 (317)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            489999999999999999999999999987643

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=91.41  E-value=0.084  Score=34.71  Aligned_cols=32  Identities=13%  Similarity=0.156  Sum_probs=30.0

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      +.|-|||||-=|.+.+....+.|++   +.+++++
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~---v~vldp~   33 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIA---VWPVGLD   33 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEE---EEEECTT
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCE---EEEEcCC
Confidence            4799999999999999999999998   9999988

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=91.41  E-value=0.1  Score=40.42  Aligned_cols=32  Identities=9%  Similarity=0.121  Sum_probs=28.4

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      -.|+|+|+|+.|+.++..++..|.+   |++++.+
T Consensus        28 ~~vlV~G~G~vG~~~~~~ak~~Ga~---vi~v~~~   59 (170)
T d1e3ja2          28 TTVLVIGAGPIGLVSVLAAKAYGAF---VVCTARS   59 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCE---EEEEESC
T ss_pred             CEEEEEcccccchhhHhhHhhhccc---ccccchH
Confidence            4799999999999999998888865   9999887

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.33  E-value=0.11  Score=40.33  Aligned_cols=33  Identities=12%  Similarity=0.139  Sum_probs=28.4

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ..|+|+|+|+.|+.++..++..|.+  +|+++|.+
T Consensus        28 d~VlI~G~G~iG~~~~~~a~~~G~~--~Vi~~d~~   60 (171)
T d1pl8a2          28 HKVLVCGAGPIGMVTLLVAKAMGAA--QVVVTDLS   60 (171)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCS--EEEEEESC
T ss_pred             CEEEEECCCccHHHHHHHHHHcCCc--eEEeccCC
Confidence            5799999999999999999988863  38888877

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=91.31  E-value=0.12  Score=40.56  Aligned_cols=34  Identities=24%  Similarity=0.388  Sum_probs=29.3

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      .++|+|||+|-+|-+++..|.+.|.+  .++++.++
T Consensus        18 ~k~vlIlGaGGaarai~~al~~~g~~--~i~i~nR~   51 (182)
T d1vi2a1          18 GKTMVLLGAGGASTAIGAQGAIEGLK--EIKLFNRR   51 (182)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCS--EEEEEECS
T ss_pred             CCEEEEECCcHHHHHHHHHHhhcCCc--eEeeeccc
Confidence            46899999999999999999998864  38888776

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=91.27  E-value=0.14  Score=39.07  Aligned_cols=34  Identities=29%  Similarity=0.411  Sum_probs=31.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccC
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE  194 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~  194 (433)
                      ++.+++|+|+|..|+..+....+.|.+|++++..
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~   64 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDIN   64 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCc
Confidence            5789999999999999999999999999999753

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=91.15  E-value=0.16  Score=39.39  Aligned_cols=35  Identities=23%  Similarity=0.174  Sum_probs=32.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP  195 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~  195 (433)
                      +|.+|+|+|+|..|+..+.....+|..|++++...
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~   62 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA   62 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccH
Confidence            57899999999999999999999999999998654

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.80  E-value=0.14  Score=40.97  Aligned_cols=33  Identities=15%  Similarity=0.317  Sum_probs=29.4

Q ss_pred             cCeEEEECC-CHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGG-GVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGg-G~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      +++|+|+|| |..|...+.+|.++|++   |+++.++
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~---V~~~~R~   36 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGYE---VTVLVRD   36 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCE---EEEEESC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcCE---EEEEEcC
Confidence            468999995 99999999999999987   9999877

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=90.68  E-value=0.14  Score=39.80  Aligned_cols=33  Identities=12%  Similarity=0.107  Sum_probs=28.2

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ..|+|+|+|+.|++++..++..|.+.  |+++|.+
T Consensus        29 ~~VlI~GaG~vGl~~~q~ak~~Ga~~--Vi~~d~~   61 (174)
T d1jqba2          29 SSVVVIGIGAVGLMGIAGAKLRGAGR--IIGVGSR   61 (174)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCSC--EEEECCC
T ss_pred             CEEEEEcCCcchhhhhhhhhcccccc--cccccch
Confidence            57999999999999999999888632  8888877

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.63  E-value=0.16  Score=38.97  Aligned_cols=33  Identities=21%  Similarity=0.113  Sum_probs=28.4

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ..+|+|+|+|+.|+.++..++..|.+   |++++.+
T Consensus        28 g~~VlV~GaG~vG~~~~~~ak~~G~~---Vi~~~~~   60 (166)
T d1llua2          28 GQWVAISGIGGLGHVAVQYARAMGLH---VAAIDID   60 (166)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESC
T ss_pred             CCEEEEeeccccHHHHHHHHHHcCCc---cceecch
Confidence            35799999999999999988888865   8888877

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.31  E-value=0.14  Score=39.57  Aligned_cols=33  Identities=21%  Similarity=0.147  Sum_probs=28.4

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ...|+|+|+|+.|+.++..++..|.+   |++++.+
T Consensus        28 g~~vlI~GaG~vG~~a~q~ak~~G~~---vi~~~~~   60 (168)
T d1piwa2          28 GKKVGIVGLGGIGSMGTLISKAMGAE---TYVISRS   60 (168)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCE---EEEEESS
T ss_pred             CCEEEEECCCCcchhHHHHhhhcccc---ccccccc
Confidence            35799999999999999988888876   8888877

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=90.22  E-value=0.19  Score=37.87  Aligned_cols=34  Identities=18%  Similarity=0.359  Sum_probs=29.2

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      +.+|.|||+|..|-++|..|.+.++.  +++|+|.+
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~--el~L~Di~   36 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLG--DVVLFDIV   36 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCC--EEEEECSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCC--eEEEEecc
Confidence            45899999999999999988887763  69999876

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=90.16  E-value=0.21  Score=37.73  Aligned_cols=32  Identities=16%  Similarity=0.299  Sum_probs=29.3

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      -.+||+|.|..|...+..|.+.|.+   |++|+.+
T Consensus         4 nHiII~G~g~~g~~l~~~L~~~~~~---v~vId~d   35 (153)
T d1id1a_           4 DHFIVCGHSILAINTILQLNQRGQN---VTVISNL   35 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCC---EEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCC---EEEEecc
Confidence            4699999999999999999999887   9999887

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=90.04  E-value=0.18  Score=38.44  Aligned_cols=34  Identities=15%  Similarity=0.388  Sum_probs=29.2

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ..+++|||+|..|-..+.+|...|.+  ++++..+.
T Consensus        24 ~~~ilviGaG~~g~~v~~~L~~~g~~--~i~v~nRt   57 (159)
T d1gpja2          24 DKTVLVVGAGEMGKTVAKSLVDRGVR--AVLVANRT   57 (159)
T ss_dssp             TCEEEEESCCHHHHHHHHHHHHHCCS--EEEEECSS
T ss_pred             cCeEEEECCCHHHHHHHHHHHhcCCc--EEEEEcCc
Confidence            57899999999999999999998864  37887766

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=89.99  E-value=0.23  Score=38.28  Aligned_cols=33  Identities=21%  Similarity=0.375  Sum_probs=28.3

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         7 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      +|.|||.|.-|.+.|+.|++.|+ ..+|..+|++
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~-~~~I~~~D~~   35 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGF-KGKIYGYDIN   35 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTC-CSEEEEECSC
T ss_pred             EEEEEccCHHHHHHHHHHHhcCC-CeEEEEEECC
Confidence            69999999999999999999886 3457777776

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=89.92  E-value=0.14  Score=40.33  Aligned_cols=31  Identities=23%  Similarity=0.288  Sum_probs=28.1

Q ss_pred             eEEEE-CCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            7 KYVIL-GGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         7 dvvII-GgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      +|.|| |+|.-|.+.|..|++.|++   |++.+++
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~---V~l~~R~   33 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHE---IVVGSRR   33 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCE---EEEEESS
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCE---EEEEECC
Confidence            68999 6699999999999999988   9999887

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=89.89  E-value=0.12  Score=35.66  Aligned_cols=74  Identities=19%  Similarity=0.090  Sum_probs=51.3

Q ss_pred             CCCcEEEECCCHHHHHH-HHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEE
Q 013952          161 KNGKAVVVGGGYIGLEL-SAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVK  239 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~-a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~  239 (433)
                      ..+++-+||-|-+|+-. |..|.+.|.+|+-.+...       .+.     .+.+++.|++++.+.....+         
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~-------~~~-----~~~L~~~Gi~v~~g~~~~~i---------   65 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIAD-------GVV-----TQRLAQAGAKIYIGHAEEHI---------   65 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCC-------SHH-----HHHHHHTTCEEEESCCGGGG---------
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCC-------Chh-----hhHHHHCCCeEEECCccccC---------
Confidence            46899999877777654 999999999999887542       222     24566789998766542211         


Q ss_pred             EEEeCCCcEEECCEEEEcccCccCh
Q 013952          240 EVKLKDGRTLEADIVVVGVGGRPLI  264 (433)
Q Consensus       240 ~v~~~~g~~i~~d~vi~a~G~~p~~  264 (433)
                               -.+|.||...+...+.
T Consensus        66 ---------~~~d~vV~S~AI~~~n   81 (96)
T d1p3da1          66 ---------EGASVVVVSSAIKDDN   81 (96)
T ss_dssp             ---------TTCSEEEECTTSCTTC
T ss_pred             ---------CCCCEEEECCCcCCCC
Confidence                     1258899988876543

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=89.73  E-value=0.42  Score=40.36  Aligned_cols=58  Identities=22%  Similarity=0.363  Sum_probs=43.0

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcC
Q 013952          162 NGKAVVVGG-GYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKG  224 (433)
Q Consensus       162 ~~~v~ViG~-G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~  224 (433)
                      .++|+|+|+ |.+|..++..|.+.|.+|+.+.|.+...    +.... .....+...+++++..
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~----~~~~~-~~~~~~~~~~v~~v~~   61 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVS----NIDKV-QMLLYFKQLGAKLIEA   61 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSS----CHHHH-HHHHHHHTTTCEEECC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCccc----chhHH-HHHhhhccCCcEEEEe
Confidence            467999996 9999999999999999999998865432    23322 2345567788887643

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.73  E-value=0.027  Score=46.56  Aligned_cols=25  Identities=32%  Similarity=0.541  Sum_probs=22.7

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCeE
Q 013952          164 KAVVVGGGYIGLELSAALKINNIDV  188 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g~~V  188 (433)
                      +|+|||+|.+|+-.|..|++.|.+|
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v   26 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSV   26 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTT
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCc
Confidence            6999999999999999999998643

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=89.66  E-value=0.23  Score=36.99  Aligned_cols=33  Identities=18%  Similarity=0.339  Sum_probs=28.1

Q ss_pred             eEEEEC-CCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            7 KYVILG-GGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         7 dvvIIG-gG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      +|.||| +|..|-++|..|..+++ ..++.|+|-.
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l-~~el~L~Di~   35 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDI-ADEVVFVDIP   35 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-CSEEEEECCG
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCC-CCEEEEEecC
Confidence            699999 69999999999999886 4578888743

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=89.57  E-value=0.13  Score=40.87  Aligned_cols=30  Identities=13%  Similarity=0.105  Sum_probs=26.3

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         7 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      +|.|||.|..|+..|..++ .|++   |+.+|.+
T Consensus         2 kI~ViGlG~vGl~~a~~~a-~g~~---V~g~Din   31 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLLS-LQNE---VTIVDIL   31 (196)
T ss_dssp             EEEEECCSHHHHHHHHHHT-TTSE---EEEECSC
T ss_pred             EEEEECCChhHHHHHHHHH-CCCc---EEEEECC
Confidence            6999999999999998776 4876   9999988

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=89.39  E-value=0.2  Score=38.85  Aligned_cols=33  Identities=15%  Similarity=0.109  Sum_probs=27.5

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ..|+|+|+|+-|+.++..++..|.+  .|++.|.+
T Consensus        30 ~~VlV~G~G~iGl~a~~~ak~~Ga~--~Vi~~d~~   62 (174)
T d1e3ia2          30 STCAVFGLGCVGLSAIIGCKIAGAS--RIIAIDIN   62 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCS--EEEEECSC
T ss_pred             CEEEEECCChHHHHHHHHHHHhCCc--eeeeeccc
Confidence            4799999999999999999998864  26666666

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=89.23  E-value=0.18  Score=39.46  Aligned_cols=33  Identities=18%  Similarity=0.215  Sum_probs=28.3

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ..|+|+|+|+.|+.++..++..|.+  .|++++.+
T Consensus        30 ~~VlV~GaG~iG~~~~~~ak~~Ga~--~Vi~~~~~   62 (182)
T d1vj0a2          30 KTVVIQGAGPLGLFGVVIARSLGAE--NVIVIAGS   62 (182)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTBS--EEEEEESC
T ss_pred             CEEEEECCCccchhheecccccccc--cccccccc
Confidence            5799999999999999999988863  38888877

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=89.15  E-value=0.26  Score=37.13  Aligned_cols=35  Identities=26%  Similarity=0.314  Sum_probs=31.4

Q ss_pred             CCCcEEEEC-CCHHHHHHHHHHHhCCCeEEEEccCC
Q 013952          161 KNGKAVVVG-GGYIGLELSAALKINNIDVSMVYPEP  195 (433)
Q Consensus       161 ~~~~v~ViG-~G~~g~e~a~~l~~~g~~V~li~~~~  195 (433)
                      .-+++.||| .|..|.-+|..|.+.|.+|+++++..
T Consensus         8 ~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~   43 (152)
T d2pv7a2           8 DIHKIVIVGGYGKLGGLFARYLRASGYPISILDRED   43 (152)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccc
Confidence            357999999 69999999999999999999998754

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=88.99  E-value=0.21  Score=39.51  Aligned_cols=34  Identities=15%  Similarity=0.035  Sum_probs=27.7

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      .-+|+|+|+|+.|+.++..++..|..  .|++++.+
T Consensus        26 G~tVlV~GaG~vGl~a~~~ak~~ga~--~Vi~~d~~   59 (195)
T d1kola2          26 GSTVYVAGAGPVGLAAAASARLLGAA--VVIVGDLN   59 (195)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCS--EEEEEESC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhccc--ceeeeccc
Confidence            35899999999999999988887753  37777766

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=88.92  E-value=0.22  Score=41.05  Aligned_cols=34  Identities=24%  Similarity=0.326  Sum_probs=30.8

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ..+|+|||+|.-|-.+|..|++.|..  +++|+|.+
T Consensus        30 ~~~VliiG~GglGs~va~~La~~Gvg--~i~lvD~D   63 (247)
T d1jw9b_          30 DSRVLIVGLGGLGCAASQYLASAGVG--NLTLLDFD   63 (247)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCS--EEEEECCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCC--eEEEECCc
Confidence            36899999999999999999999954  59999988

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=88.89  E-value=0.17  Score=39.19  Aligned_cols=33  Identities=12%  Similarity=0.201  Sum_probs=27.9

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      .+.|+|+|+|-++.+++..|.+.+.   +|+|+.++
T Consensus        18 ~k~vlIlGaGGaarai~~aL~~~~~---~i~I~nR~   50 (171)
T d1p77a1          18 NQHVLILGAGGATKGVLLPLLQAQQ---NIVLANRT   50 (171)
T ss_dssp             TCEEEEECCSHHHHTTHHHHHHTTC---EEEEEESS
T ss_pred             CCEEEEECCcHHHHHHHHHHcccCc---eeeeccch
Confidence            4689999999999999999987553   49998887

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=88.88  E-value=0.22  Score=38.28  Aligned_cols=32  Identities=13%  Similarity=0.095  Sum_probs=27.2

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ..|+|+|+|+.|+.++..++..|.+   +++++..
T Consensus        32 ~~VlI~GaG~vG~~a~qlak~~Ga~---~i~~~~~   63 (168)
T d1uufa2          32 KKVGVVGIGGLGHMGIKLAHAMGAH---VVAFTTS   63 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCE---EEEEESS
T ss_pred             CEEEEeccchHHHHHHHHhhccccc---chhhccc
Confidence            5799999999999999988888876   6677666

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=88.85  E-value=0.54  Score=39.37  Aligned_cols=58  Identities=17%  Similarity=0.280  Sum_probs=43.0

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEc
Q 013952          162 NGKAVVVGG-GYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIK  223 (433)
Q Consensus       162 ~~~v~ViG~-G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~  223 (433)
                      .++|+|+|+ |.+|-.++..|.+.|.+|+.+.|.+....   ..+... ....+...+++++.
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~---~~~~~~-~~~~~~~~~~~~~~   61 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASS---NSEKAQ-LLESFKASGANIVH   61 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTT---THHHHH-HHHHHHTTTCEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcccc---chhHHH-HHHhhccCCcEEEE
Confidence            478999996 89999999999999999999998765433   233332 33455667777653

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=88.47  E-value=0.39  Score=36.49  Aligned_cols=40  Identities=18%  Similarity=0.299  Sum_probs=32.8

Q ss_pred             HHHHhcCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccC
Q 013952          155 EAIKAKKNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPE  194 (433)
Q Consensus       155 ~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~-~V~li~~~  194 (433)
                      +.+.....++++|||+|.+|..++..|...|. ++++..|.
T Consensus        17 ~~~~~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt   57 (159)
T d1gpja2          17 RELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT   57 (159)
T ss_dssp             HHHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSS
T ss_pred             HHhCCcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCc
Confidence            33444578999999999999999999999997 58887654

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.99  E-value=0.18  Score=41.22  Aligned_cols=31  Identities=23%  Similarity=0.449  Sum_probs=26.3

Q ss_pred             cEEEECCCHHHHHHHHHHHhCC---CeEEEEccC
Q 013952          164 KAVVVGGGYIGLELSAALKINN---IDVSMVYPE  194 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g---~~V~li~~~  194 (433)
                      +|+|||+|+.|+.+|..+++.+   .+|+++++.
T Consensus         3 ~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~   36 (233)
T d1xdia1           3 RIVILGGGPAGYEAALVAATSHPETTQVTVIDCD   36 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESS
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecC
Confidence            7899999999999998877665   578999864

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=87.87  E-value=0.27  Score=43.09  Aligned_cols=33  Identities=18%  Similarity=0.149  Sum_probs=30.3

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc
Q 013952          164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPW  196 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~  196 (433)
                      .++|||+|..|+-+|..|++.|.+|.++++++.
T Consensus         4 D~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~~   36 (360)
T d1kdga1           4 DYIIVGAGPGGIIAADRLSEAGKKVLLLERGGP   36 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             CEEEECcCHHHHHHHHHHhhCCCeEEEEEccCC
Confidence            479999999999999999999999999998853

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=87.78  E-value=0.36  Score=37.11  Aligned_cols=34  Identities=12%  Similarity=0.120  Sum_probs=30.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccC
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE  194 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~  194 (433)
                      ++++++|+|+|-.+--++..|.+.|.+++++.|.
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt   50 (170)
T d1nyta1          17 PGLRILLIGAGGASRGVLLPLLSLDCAVTITNRT   50 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCEEEEECCcHHHHHHHHHhcccceEEEeccch
Confidence            5789999999999999999999999999988764

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=87.71  E-value=0.17  Score=39.84  Aligned_cols=31  Identities=32%  Similarity=0.370  Sum_probs=28.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEcc
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYP  193 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~  193 (433)
                      ++++|+|+|..|.-+|..|++.|.+|+++.+
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r   38 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHM   38 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEEEEEEECS
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCeEEEEEe
Confidence            4799999999999999999999999999865

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=87.59  E-value=0.28  Score=37.91  Aligned_cols=33  Identities=15%  Similarity=0.090  Sum_probs=26.5

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      .+|+|+|+|+.|++++..++..|.+.  |++.+.+
T Consensus        30 ~~VlI~G~G~iG~~~~~~ak~~g~~~--v~~~~~~   62 (174)
T d1f8fa2          30 SSFVTWGAGAVGLSALLAAKVCGASI--IIAVDIV   62 (174)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHHTCSE--EEEEESC
T ss_pred             CEEEEeCCCHHHhhhhhcccccccce--eeeeccH
Confidence            47999999999999999998888652  5555555

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.26  E-value=0.34  Score=36.80  Aligned_cols=34  Identities=26%  Similarity=0.212  Sum_probs=31.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccC
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE  194 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~  194 (433)
                      .+|+++|+|-|.+|-.+|..++..|.+|++.+..
T Consensus        23 ~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~d   56 (163)
T d1li4a1          23 AGKVAVVAGYGDVGKGCAQALRGFGARVIITEID   56 (163)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             cCCEEEEeccccccHHHHHHHHhCCCeeEeeecc
Confidence            6899999999999999999999999999998764

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=87.26  E-value=0.87  Score=37.63  Aligned_cols=55  Identities=16%  Similarity=0.154  Sum_probs=42.1

Q ss_pred             cCCCcEEEECC-CHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEE
Q 013952          160 KKNGKAVVVGG-GYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKII  222 (433)
Q Consensus       160 ~~~~~v~ViG~-G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~  222 (433)
                      +++|.++|.|+ +-+|.++|..|++.|.+|.+..+.        .++..+.+.+.+++.|.+++
T Consensus         5 L~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~--------~~~~~~~~~~~~~~~g~~~~   60 (261)
T d1geea_           5 LEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRS--------KEDEANSVLEEIKKVGGEAI   60 (261)
T ss_dssp             GTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESS--------CHHHHHHHHHHHHHTTCEEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC--------cHHHHHHHHHHHHhcCCcEE
Confidence            36788888775 579999999999999999988764        34455666777788777654

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=87.23  E-value=0.32  Score=37.71  Aligned_cols=33  Identities=15%  Similarity=0.078  Sum_probs=28.3

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ..|+|+|+|+.|+.++..++..|..  +|+++|.+
T Consensus        31 ~tVlI~G~GgvGl~ai~~ak~~G~~--~Vi~vd~~   63 (176)
T d1d1ta2          31 STCVVFGLGGVGLSVIMGCKSAGAS--RIIGIDLN   63 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCS--EEEEECSC
T ss_pred             CEEEEECCCchhHHHHHHHHHcCCc--eEEEecCc
Confidence            4599999999999999999998843  38888877

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=87.09  E-value=0.88  Score=37.56  Aligned_cols=52  Identities=19%  Similarity=0.282  Sum_probs=40.2

Q ss_pred             CCCcEEEECCC-HHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEE
Q 013952          161 KNGKAVVVGGG-YIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKI  221 (433)
Q Consensus       161 ~~~~v~ViG~G-~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v  221 (433)
                      ++|.++|.|++ -+|..+|..|++.|.+|.+..+         +++-.+.+.+.+++.|.++
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r---------~~~~l~~~~~~~~~~g~~~   56 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDM---------NREALEKAEASVREKGVEA   56 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES---------CHHHHHHHHHHHHTTTSCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEEC---------CHHHHHHHHHHHHhcCCcE
Confidence            68888888864 6999999999999999999865         3444455666777777653

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=87.03  E-value=0.25  Score=38.41  Aligned_cols=32  Identities=31%  Similarity=0.385  Sum_probs=26.4

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      .++|+|||+|-++-+++..|.+.+    +|+|+.++
T Consensus        18 ~k~vlIlGaGG~arai~~aL~~~~----~i~I~nR~   49 (177)
T d1nvta1          18 DKNIVIYGAGGAARAVAFELAKDN----NIIIANRT   49 (177)
T ss_dssp             SCEEEEECCSHHHHHHHHHHTSSS----EEEEECSS
T ss_pred             CCEEEEECCcHHHHHHHHHHcccc----ceeeehhh
Confidence            468999999999999988886644    48888776

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=86.85  E-value=0.43  Score=33.96  Aligned_cols=35  Identities=31%  Similarity=0.391  Sum_probs=30.1

Q ss_pred             CCcEEEECCCH-----------HHHHHHHHHHhCCCeEEEEccCCc
Q 013952          162 NGKAVVVGGGY-----------IGLELSAALKINNIDVSMVYPEPW  196 (433)
Q Consensus       162 ~~~v~ViG~G~-----------~g~e~a~~l~~~g~~V~li~~~~~  196 (433)
                      .++++|+|+|+           .+..++..|++.|.++.++...+.
T Consensus         4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPe   49 (121)
T d1a9xa4           4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPE   49 (121)
T ss_dssp             SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTT
T ss_pred             CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChh
Confidence            57999999984           678899999999999999987654

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=86.80  E-value=0.34  Score=37.49  Aligned_cols=33  Identities=12%  Similarity=0.059  Sum_probs=27.6

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ..|+|+|+|+.|++++..++..|.+  .|+++|.+
T Consensus        29 ~~VlV~GaGgvGl~a~~~ak~~G~~--~Vi~~d~~   61 (174)
T d1p0fa2          29 STCAVFGLGGVGFSAIVGCKAAGAS--RIIGVGTH   61 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCS--EEEEECSC
T ss_pred             CEEEEECCCchhHHHHHHHHHcCCc--eeeccCCh
Confidence            4699999999999999999998854  27777766

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=86.34  E-value=0.45  Score=37.33  Aligned_cols=35  Identities=29%  Similarity=0.333  Sum_probs=31.5

Q ss_pred             cCCCcEEEEC-CCHHHHHHHHHHHhCCCeEEEEccC
Q 013952          160 KKNGKAVVVG-GGYIGLELSAALKINNIDVSMVYPE  194 (433)
Q Consensus       160 ~~~~~v~ViG-~G~~g~e~a~~l~~~g~~V~li~~~  194 (433)
                      .++|+++|.| +|-+|.++|..|.+.|.+|+++.|.
T Consensus        21 l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~   56 (191)
T d1luaa1          21 VKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRK   56 (191)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccc
Confidence            3689999999 6899999999999999999998775

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=86.25  E-value=0.32  Score=37.19  Aligned_cols=32  Identities=16%  Similarity=0.055  Sum_probs=27.4

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ..|+|+|+|+.|+.++..++..|.+   |.+++.+
T Consensus        29 ~~vlv~G~G~iG~~a~~~a~~~g~~---v~~~~~~   60 (168)
T d1rjwa2          29 EWVAIYGIGGLGHVAVQYAKAMGLN---VVAVDIG   60 (168)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCE---EEEECSC
T ss_pred             CEEEEeecccchhhhhHHHhcCCCe---EeccCCC
Confidence            5799999999999998888888875   8888766

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=86.19  E-value=0.43  Score=36.38  Aligned_cols=31  Identities=32%  Similarity=0.307  Sum_probs=28.3

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEccC
Q 013952          164 KAVVVGGGYIGLELSAALKINNIDVSMVYPE  194 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~  194 (433)
                      ++.|||.|..|.-+|..|.+.|.+|+.+++.
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~   32 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQ   32 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECC
Confidence            6899999999999999999999999988653

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=86.03  E-value=0.5  Score=35.17  Aligned_cols=33  Identities=24%  Similarity=0.216  Sum_probs=25.8

Q ss_pred             eEEEEC-CCHHHHHHHHHHHHc-CCCCCcEEEEcCC
Q 013952            7 KYVILG-GGVSAGYAAREFAKQ-GVKPGELAIISKE   40 (433)
Q Consensus         7 dvvIIG-gG~aGl~aA~~l~~~-g~~~~~V~lie~~   40 (433)
                      +|.||| +|..|-+.|..|..+ +. ..++.++|..
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~-~~el~L~D~~   36 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPS-GSELSLYDIA   36 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCT-TCEEEEECSS
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCC-CcEEEEeccc
Confidence            799999 599999999988654 43 3468888755

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.98  E-value=0.41  Score=36.67  Aligned_cols=35  Identities=20%  Similarity=0.122  Sum_probs=31.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP  195 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~  195 (433)
                      ++++++|+|+|.+|.-.+..++..|.+|..+++.+
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~   61 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSS   61 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSS
T ss_pred             CCCEEEEECCCCcchhHHHHhhhccccccccccch
Confidence            67899999999999999999989999998887654

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=85.78  E-value=0.34  Score=37.71  Aligned_cols=30  Identities=27%  Similarity=0.321  Sum_probs=28.0

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEcc
Q 013952          164 KAVVVGGGYIGLELSAALKINNIDVSMVYP  193 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~  193 (433)
                      +|.|+|+|..|.-+|..|++.|.+|+++.|
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r   31 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEe
Confidence            689999999999999999999999999865

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=85.76  E-value=0.4  Score=40.50  Aligned_cols=34  Identities=18%  Similarity=0.242  Sum_probs=29.8

Q ss_pred             CcCeEEEECC-CHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            4 KSFKYVILGG-GVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         4 ~~~dvvIIGg-G~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ++.+|+|+|| |..|...+.+|.++|++   |+++.++
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~~---V~~~~R~   36 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGHP---TYVLFRP   36 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCC---EEEECCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCE---EEEEECC
Confidence            3567999997 99999999999999987   8888776

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=85.50  E-value=0.43  Score=36.52  Aligned_cols=34  Identities=26%  Similarity=0.204  Sum_probs=30.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccC
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE  194 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~  194 (433)
                      ++.+++|+|+|.+|+-++..++..|.+|..+++.
T Consensus        26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~   59 (170)
T d1e3ja2          26 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARS   59 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEEcccccchhhHhhHhhhcccccccchH
Confidence            5789999999999999999999999999888654

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=85.43  E-value=0.49  Score=37.92  Aligned_cols=34  Identities=21%  Similarity=0.309  Sum_probs=30.5

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ..++++.|+|.||+..|..+.+.+.+  ++.++|+.
T Consensus        26 d~riv~~GAGsAg~gia~~l~~~~~~--~i~~~D~~   59 (222)
T d1vl6a1          26 EVKVVVNGIGAAGYNIVKFLLDLGVK--NVVAVDRK   59 (222)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCC--EEEEEETT
T ss_pred             hcEEEEEChHHHHHHHHHHHHHhccc--ceEeecce
Confidence            56899999999999999999998865  49999998

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=85.42  E-value=0.33  Score=37.95  Aligned_cols=31  Identities=16%  Similarity=0.280  Sum_probs=28.0

Q ss_pred             cEEEE-CCCHHHHHHHHHHHhCCCeEEEEccC
Q 013952          164 KAVVV-GGGYIGLELSAALKINNIDVSMVYPE  194 (433)
Q Consensus       164 ~v~Vi-G~G~~g~e~a~~l~~~g~~V~li~~~  194 (433)
                      ++.|+ |+|.+|..+|..|++.|.+|++..|.
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~   33 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRR   33 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESS
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            58899 67999999999999999999999764

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=85.23  E-value=0.36  Score=38.32  Aligned_cols=31  Identities=23%  Similarity=0.319  Sum_probs=28.6

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEccC
Q 013952          164 KAVVVGGGYIGLELSAALKINNIDVSMVYPE  194 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~  194 (433)
                      ++.|||.|++|+-+|..|++.|.+|+.++..
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n   32 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVS   32 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEEeCC
Confidence            6899999999999999999999999998754

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=85.10  E-value=0.6  Score=36.26  Aligned_cols=35  Identities=26%  Similarity=0.300  Sum_probs=32.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP  195 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~  195 (433)
                      .++++.|+|.|.+|-++|..+...|.+|..+.+.+
T Consensus        41 ~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~   75 (181)
T d1qp8a1          41 QGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTP   75 (181)
T ss_dssp             TTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cCceEEEeccccccccceeeeeccccccccccccc
Confidence            47899999999999999999999999999997654

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=85.01  E-value=0.56  Score=36.14  Aligned_cols=34  Identities=26%  Similarity=0.264  Sum_probs=29.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccC
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPE  194 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~-~V~li~~~  194 (433)
                      ++.+|+|+|+|.+|+-.+..+...|. +|+.+++.
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~   61 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSR   61 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCC
T ss_pred             CCCEEEEEcCCcchhhhhhhhhcccccccccccch
Confidence            67899999999999999999999996 67777643

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=84.90  E-value=0.45  Score=39.91  Aligned_cols=34  Identities=15%  Similarity=0.257  Sum_probs=30.4

Q ss_pred             CcCeEEEECC-CHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            4 KSFKYVILGG-GVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         4 ~~~dvvIIGg-G~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ++++|+|+|| |..|-..+..|.+.|++   |++++++
T Consensus         2 ~kkKILVtGatG~iG~~l~~~L~~~G~~---V~~l~R~   36 (307)
T d1qyca_           2 SRSRILLIGATGYIGRHVAKASLDLGHP---TFLLVRE   36 (307)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCC---EEEECCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCe---EEEEECC
Confidence            3578999997 99999999999999987   9999887

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=84.80  E-value=1  Score=37.05  Aligned_cols=53  Identities=17%  Similarity=0.128  Sum_probs=40.4

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEE
Q 013952          161 KNGKAVVVGG-GYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKI  221 (433)
Q Consensus       161 ~~~~v~ViG~-G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v  221 (433)
                      .+|.++|.|+ +-+|.++|..|++.|.+|.+..+.        +.+..+.+.+.+++.|.++
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~--------~~~~~~~~~~~~~~~g~~~   58 (259)
T d1ja9a_           5 AGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGS--------SSKAAEEVVAELKKLGAQG   58 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESS--------CHHHHHHHHHHHHHTTCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCC--------ChHHHHHHHHHHHHcCCCc
Confidence            5778888875 469999999999999999876553        4555566777778777654

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.67  E-value=0.87  Score=34.51  Aligned_cols=35  Identities=11%  Similarity=0.119  Sum_probs=30.8

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccC
Q 013952          160 KKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE  194 (433)
Q Consensus       160 ~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~  194 (433)
                      .++++|+|+|+|.+|+-.+..++..|.+|..+.+.
T Consensus        26 ~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~   60 (166)
T d1llua2          26 RPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDID   60 (166)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCEEEEeeccccHHHHHHHHHHcCCccceecch
Confidence            36789999999999999999999999998888653

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=84.62  E-value=0.51  Score=36.24  Aligned_cols=33  Identities=12%  Similarity=0.033  Sum_probs=27.0

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ..|+|+|+|+.|+.++..++..|..  .|++++.+
T Consensus        34 ~~vli~GaG~vG~~~~~~a~~~g~~--~vv~~~~~   66 (172)
T d1h2ba2          34 AYVAIVGVGGLGHIAVQLLKVMTPA--TVIALDVK   66 (172)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCCC--EEEEEESS
T ss_pred             CEEEEeCCChHHHHHHHHHHhhcCc--ccccccch
Confidence            5799999999999999998888854  26677666

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=84.43  E-value=0.53  Score=33.90  Aligned_cols=36  Identities=22%  Similarity=0.283  Sum_probs=30.6

Q ss_pred             CCCcEEEECCCH-----------HHHHHHHHHHhCCCeEEEEccCCc
Q 013952          161 KNGKAVVVGGGY-----------IGLELSAALKINNIDVSMVYPEPW  196 (433)
Q Consensus       161 ~~~~v~ViG~G~-----------~g~e~a~~l~~~g~~V~li~~~~~  196 (433)
                      ..++|+|+|+|+           .+..++..|++.|.++.++...+.
T Consensus         6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~   52 (127)
T d1a9xa3           6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPA   52 (127)
T ss_dssp             SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTT
T ss_pred             CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchH
Confidence            468999999985           678899999999999999987654

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.33  E-value=0.51  Score=35.88  Aligned_cols=31  Identities=19%  Similarity=0.237  Sum_probs=28.5

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         7 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      +|-+||-|.-|...|+.|.++|++   |.+.|++
T Consensus         3 kIg~IGlG~MG~~iA~~L~~~g~~---v~~~d~~   33 (162)
T d3cuma2           3 QIAFIGLGHMGAPMATNLLKAGYL---LNVFDLV   33 (162)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCE---EEEECSS
T ss_pred             EEEEEEEHHHHHHHHHHHHHCCCe---EEEEECc
Confidence            699999999999999999999987   8888777

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=84.33  E-value=0.56  Score=36.04  Aligned_cols=33  Identities=15%  Similarity=0.164  Sum_probs=26.8

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ..|+|+|+|+.|++++..++..+..  .|+.++.+
T Consensus        30 ~~VlI~G~Gg~g~~~~~~~~~~g~~--~Vi~~~~~   62 (175)
T d1cdoa2          30 STCAVFGLGAVGLAAVMGCHSAGAK--RIIAVDLN   62 (175)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCS--EEEEECSC
T ss_pred             CEEEEEecCCccchHHHHHHHHhhc--hheeecch
Confidence            4688999999999999999988743  37777666

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.21  E-value=0.61  Score=42.24  Aligned_cols=61  Identities=8%  Similarity=-0.013  Sum_probs=52.0

Q ss_pred             CHHHHHHHHHHHHhcCcEEEcCCeEEEEEec-CCCcEEEEEeCCCcEEECCEEEEcccCccC
Q 013952          203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTN-ADGEVKEVKLKDGRTLEADIVVVGVGGRPL  263 (433)
Q Consensus       203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~-~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~  263 (433)
                      ..++.+.+-+...-.|-.+++++.|.++..+ +++++..+...+|+++.|+.+|....+-|.
T Consensus       375 ~gEipQ~FcR~~AV~Gg~Y~L~~~i~~i~~d~e~~~~~~v~~~~g~~i~~k~vI~~psy~p~  436 (491)
T d1vg0a1         375 QGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSE  436 (491)
T ss_dssp             TTHHHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEGGGBCT
T ss_pred             cchHHHHHHHHHHhcCcEEEcCCccceEEEecCCCeEEEEEccCCcEEecCeEEECHHhCCc
Confidence            3588888888888899999999999999764 466777888999999999999998876664

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=84.09  E-value=0.43  Score=40.52  Aligned_cols=32  Identities=25%  Similarity=0.451  Sum_probs=28.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Q 013952          163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEP  195 (433)
Q Consensus       163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~  195 (433)
                      -.|+|||+|..|+-+|..+++.| +|.+++..+
T Consensus         8 ~DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~~   39 (305)
T d1chua2           8 CDVLIIGSGAAGLSLALRLADQH-QVIVLSKGP   39 (305)
T ss_dssp             CSEEEECCSHHHHHHHHHHTTTS-CEEEECSSC
T ss_pred             CCEEEECccHHHHHHHHHhhcCC-CEEEEECCC
Confidence            37999999999999999998877 899998765

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=83.56  E-value=0.17  Score=36.92  Aligned_cols=35  Identities=11%  Similarity=0.066  Sum_probs=25.1

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHc-CCCCCcEEEEcCC
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQ-GVKPGELAIISKE   40 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~-g~~~~~V~lie~~   40 (433)
                      ++++|+|+|||-+|.+.+.++.+. +++  -+..+|.+
T Consensus         2 ~~~~v~I~GaG~~G~~l~~~l~~~~~~~--iv~fiDdd   37 (126)
T d2dt5a2           2 RKWGLCIVGMGRLGSALADYPGFGESFE--LRGFFDVD   37 (126)
T ss_dssp             SCEEEEEECCSHHHHHHHHCSCCCSSEE--EEEEEESC
T ss_pred             CCceEEEEcCCHHHHHHHHhHhhcCCcE--EEEEEeCc
Confidence            467999999999999887766432 332  25677766

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=83.56  E-value=1.8  Score=35.49  Aligned_cols=53  Identities=21%  Similarity=0.196  Sum_probs=40.3

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEE
Q 013952          161 KNGKAVVVGG-GYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKII  222 (433)
Q Consensus       161 ~~~~v~ViG~-G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~  222 (433)
                      ++|.++|.|+ +-+|.++|..|++.|.+|.+..+.         ++-.+.+.+.+++.+..++
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~---------~~~l~~~~~~~~~~~~~~~   58 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRN---------EKELDECLEIWREKGLNVE   58 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC---------HHHHHHHHHHHHHTTCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC---------HHHHHHHHHHHHhcCCCce
Confidence            5889999985 579999999999999999998763         3333445566777776553

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.53  E-value=0.59  Score=37.49  Aligned_cols=21  Identities=29%  Similarity=0.300  Sum_probs=19.1

Q ss_pred             cCeEEEECCCHHHHHHHHHHH
Q 013952            5 SFKYVILGGGVSAGYAAREFA   25 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~   25 (433)
                      ..+|+|||+|-.++=+|+.|.
T Consensus        39 gk~VvVIGgGNvAlD~AR~ll   59 (216)
T d1lqta1          39 GARAVVIGNGNVALDVARILL   59 (216)
T ss_dssp             SSEEEEECCSHHHHHHHHHHH
T ss_pred             CceEEEECCCchhHhhhhhhc
Confidence            468999999999999999887

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=83.44  E-value=0.8  Score=34.94  Aligned_cols=34  Identities=26%  Similarity=0.371  Sum_probs=29.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccC
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPE  194 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~-~V~li~~~  194 (433)
                      +.++|+|+|+|-.+--++..|.+.|. +++++.|.
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~   50 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARN   50 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeccc
Confidence            56899999999999999999999995 78888664

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=83.03  E-value=0.58  Score=35.49  Aligned_cols=31  Identities=19%  Similarity=0.349  Sum_probs=28.4

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         7 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      +|-|||-|.-|...|..|.++|++   |.+.+++
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~---V~~~d~~   32 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYS---LVVSDRN   32 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCE---EEEECSC
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCe---EEEEeCC
Confidence            699999999999999999999987   8888776

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=82.75  E-value=0.91  Score=34.95  Aligned_cols=35  Identities=17%  Similarity=0.253  Sum_probs=29.3

Q ss_pred             hcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccC
Q 013952          159 AKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE  194 (433)
Q Consensus       159 ~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~  194 (433)
                      +.++++++|+|+|-++--++..|.+.| +|+++.|.
T Consensus        15 ~~~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~   49 (177)
T d1nvta1          15 RVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRT   49 (177)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSS
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHcccc-ceeeehhh
Confidence            347899999999999988888887776 88888764

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=82.70  E-value=0.9  Score=37.50  Aligned_cols=35  Identities=29%  Similarity=0.525  Sum_probs=30.3

Q ss_pred             CCCcEEEECCC-HHHHHHHHHHHhCCCeEEEEccCC
Q 013952          161 KNGKAVVVGGG-YIGLELSAALKINNIDVSMVYPEP  195 (433)
Q Consensus       161 ~~~~v~ViG~G-~~g~e~a~~l~~~g~~V~li~~~~  195 (433)
                      ++|.++|.|++ -+|..+|..|++.|.+|.+..+..
T Consensus         8 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~   43 (260)
T d1h5qa_           8 VNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSA   43 (260)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            57888888865 699999999999999999988754

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=82.67  E-value=0.59  Score=41.33  Aligned_cols=34  Identities=29%  Similarity=0.464  Sum_probs=30.6

Q ss_pred             cEEEECCCHHHHHHHHHHHhCC-CeEEEEccCCcc
Q 013952          164 KAVVVGGGYIGLELSAALKINN-IDVSMVYPEPWC  197 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g-~~V~li~~~~~~  197 (433)
                      .++|||+|..|+-+|..|++.+ .+|.++++++..
T Consensus        26 D~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~~   60 (391)
T d1gpea1          26 DYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE   60 (391)
T ss_dssp             EEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred             eEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCCC
Confidence            5799999999999999999988 699999998654

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=82.50  E-value=0.81  Score=36.01  Aligned_cols=34  Identities=21%  Similarity=0.095  Sum_probs=31.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccC
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE  194 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~  194 (433)
                      .++++.|||-|.+|-++|..+...|.+|..+++.
T Consensus        42 ~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~   75 (197)
T d1j4aa1          42 RDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIF   75 (197)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             cCCeEEEecccccchhHHHhHhhhcccccccCcc
Confidence            4789999999999999999999999999888654

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=82.46  E-value=0.63  Score=34.86  Aligned_cols=31  Identities=19%  Similarity=0.218  Sum_probs=26.8

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         7 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      +|-|||.|.-|.+.|..|++.|+.   |++.++.
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~~---v~~~~~~   32 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGVE---VVTSLEG   32 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCE---EEECCTT
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCCe---EEEEcCc
Confidence            699999999999999999999886   6666544

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=82.31  E-value=0.43  Score=38.85  Aligned_cols=32  Identities=25%  Similarity=0.248  Sum_probs=27.4

Q ss_pred             cEEEECCCHHHHHHHHHHHhCC-CeEEEEccCC
Q 013952          164 KAVVVGGGYIGLELSAALKINN-IDVSMVYPEP  195 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g-~~V~li~~~~  195 (433)
                      .++|||+|+.|+.+|..+++.| ++|.+++...
T Consensus         5 DvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~   37 (240)
T d1feca1           5 DLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQK   37 (240)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHCCCEEEEESCS
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCEEEEEEEec
Confidence            5899999999999999999987 4688887654

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.24  E-value=0.98  Score=35.59  Aligned_cols=38  Identities=21%  Similarity=0.292  Sum_probs=32.8

Q ss_pred             CCcEEEEC-CCHHHHHHHHHHHhCCCeEEEEccCCccCC
Q 013952          162 NGKAVVVG-GGYIGLELSAALKINNIDVSMVYPEPWCMP  199 (433)
Q Consensus       162 ~~~v~ViG-~G~~g~e~a~~l~~~g~~V~li~~~~~~~~  199 (433)
                      -++|+|+| .|.+|-.++..|.+.|.+|+.+.|.+.-.+
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~   41 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLP   41 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcc
Confidence            57899999 599999999999999999999988765443

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=82.20  E-value=0.8  Score=35.77  Aligned_cols=33  Identities=21%  Similarity=0.283  Sum_probs=29.3

Q ss_pred             cCeEEEEC-CCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILG-GGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIG-gG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      .+.++|.| +|..|..+|+.|++.|.+   |++++++
T Consensus        23 gK~vlItGasgGIG~~ia~~la~~G~~---V~~~~r~   56 (191)
T d1luaa1          23 GKKAVVLAGTGPVGMRSAALLAGEGAE---VVLCGRK   56 (191)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhhccc---hhhcccc
Confidence            57899999 588999999999999987   9999888

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=82.16  E-value=0.68  Score=37.37  Aligned_cols=34  Identities=29%  Similarity=0.240  Sum_probs=28.6

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHc--------------------CCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQ--------------------GVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~--------------------g~~~~~V~lie~~   40 (433)
                      ..+|+|||+|-.++=||+.|.+.                    |.  .+|+++.+.
T Consensus        39 gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~--~~V~iv~RR   92 (225)
T d1cjca1          39 CDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRV--KTVWIVGRR   92 (225)
T ss_dssp             SSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCC--CEEEEECSS
T ss_pred             CceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCC--CeEEEEEEc
Confidence            46899999999999999999883                    43  359999887

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.08  E-value=1.8  Score=35.22  Aligned_cols=52  Identities=12%  Similarity=0.031  Sum_probs=37.8

Q ss_pred             CCCcEEEECCC-HHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEE
Q 013952          161 KNGKAVVVGGG-YIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKI  221 (433)
Q Consensus       161 ~~~~v~ViG~G-~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v  221 (433)
                      .+|.++|.|++ -+|.++|..|++.|.+|.+..+.         ++-.+.+.+.+++.|.++
T Consensus         6 ~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~---------~~~l~~~~~~~~~~~~~~   58 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDIN---------KHGLEETAAKCKGLGAKV   58 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC---------HHHHHHHHHHHHHTTCCE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC---------HHHHHHHHHHHHhcCCcE
Confidence            57788888865 59999999999999999998763         233344455566666543

>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB)
species: Escherichia coli [TaxId: 562]

Probab=82.05  E-value=1.4  Score=35.23  Aligned_cols=71  Identities=14%  Similarity=0.162  Sum_probs=47.5

Q ss_pred             CCCcEEEEC-----------------CCHHHHHHHHHHHhCCCeEEEEccCCccCCC-C-------CCHHHHHHHHHHHH
Q 013952          161 KNGKAVVVG-----------------GGYIGLELSAALKINNIDVSMVYPEPWCMPR-L-------FTADIAAFYEGYYA  215 (433)
Q Consensus       161 ~~~~v~ViG-----------------~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~-~-------~~~~~~~~l~~~l~  215 (433)
                      .+++|+|.+                 +|-.|.++|..+.++|.+|+++.......+. .       -..++.+.+.+.+.
T Consensus         5 ~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga~V~li~g~~~~~~p~~~~~~~~~t~~~m~~~~~~~~~   84 (223)
T d1u7za_           5 KHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSLPTPPFVKRVDVMTALEMEAAVNASVQ   84 (223)
T ss_dssp             TTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCCCCCCTTEEEEECCSHHHHHHHHHHHGG
T ss_pred             CCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcCCchhhhhcccccCcccccccceehhhHHHHHHHHhhhc
Confidence            577888875                 4779999999999999999999765443221 0       12466667767666


Q ss_pred             hcCcEEEcCCeEEEEEe
Q 013952          216 NKGIKIIKGTVAVGFTT  232 (433)
Q Consensus       216 ~~GV~v~~~~~v~~i~~  232 (433)
                      +..+-++ ..-|..+..
T Consensus        85 ~~D~~i~-aAAvsDf~~  100 (223)
T d1u7za_          85 QQNIFIG-CAAVADYRA  100 (223)
T ss_dssp             GCSEEEE-CCBCCSEEE
T ss_pred             cceeEee-eechhhhhh
Confidence            6555443 444555544

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=81.94  E-value=0.41  Score=36.14  Aligned_cols=28  Identities=11%  Similarity=0.082  Sum_probs=23.2

Q ss_pred             CCCcCeEEEECC-CHHHHHHHHHHHHcCC
Q 013952            2 AEKSFKYVILGG-GVSAGYAAREFAKQGV   29 (433)
Q Consensus         2 m~~~~dvvIIGg-G~aGl~aA~~l~~~g~   29 (433)
                      |+...+|.|||| |..|-+.|..|+...+
T Consensus         1 m~~p~KV~IiGA~G~VG~~~a~~l~~~~l   29 (154)
T d1y7ta1           1 MKAPVRVAVTGAAGQIGYSLLFRIAAGEM   29 (154)
T ss_dssp             CCCCEEEEESSTTSHHHHHHHHHHHTTTT
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHhccc
Confidence            444569999996 9999999999998653

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=81.90  E-value=0.91  Score=34.53  Aligned_cols=34  Identities=21%  Similarity=0.047  Sum_probs=30.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccC
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE  194 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~  194 (433)
                      ++++|+|+|+|.+|+-+++.++..|.++..+.+.
T Consensus        30 ~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~   63 (168)
T d1uufa2          30 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTS   63 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCEEEEeccchHHHHHHHHhhcccccchhhccc
Confidence            6789999999999999999999999988877654

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=81.88  E-value=0.61  Score=36.11  Aligned_cols=34  Identities=18%  Similarity=0.191  Sum_probs=29.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccC
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPE  194 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~-~V~li~~~  194 (433)
                      ++.+|+|+|+|.+|+-++..+...|. +|+.+++.
T Consensus        28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~   62 (182)
T d1vj0a2          28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGS   62 (182)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESC
T ss_pred             CCCEEEEECCCccchhheecccccccccccccccc
Confidence            57899999999999999999999997 68887653

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=81.86  E-value=1.7  Score=35.91  Aligned_cols=53  Identities=23%  Similarity=0.267  Sum_probs=40.8

Q ss_pred             CCCcEEEEC-CCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEE
Q 013952          161 KNGKAVVVG-GGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKI  221 (433)
Q Consensus       161 ~~~~v~ViG-~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v  221 (433)
                      ++|.++|.| ++-+|..+|..|++.|.+|.+..+.        ..+..+.+.+.+++.|.++
T Consensus        17 ~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~--------~~~~~~~~~~~~~~~g~~~   70 (272)
T d1g0oa_          17 EGKVALVTGAGRGIGREMAMELGRRGCKVIVNYAN--------STESAEEVVAAIKKNGSDA   70 (272)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESS--------CHHHHHHHHHHHHHTTCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCC--------chHHHHHHHHHHHhhCCce
Confidence            578888887 4689999999999999999987654        3455566667777777654

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=81.85  E-value=1.7  Score=35.58  Aligned_cols=53  Identities=15%  Similarity=0.253  Sum_probs=38.0

Q ss_pred             CCCcEEEECCC-HHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEE
Q 013952          161 KNGKAVVVGGG-YIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKI  221 (433)
Q Consensus       161 ~~~~v~ViG~G-~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v  221 (433)
                      ++|.++|.|++ -+|..+|..|++.|.+|.+..+.        .+++.+...+..++.|.++
T Consensus         4 ~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~--------~~~~~~~~~~l~~~~g~~~   57 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRN--------LEEASEAAQKLTEKYGVET   57 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC--------HHHHHHHHHHHHHHHCCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC--------HHHHHHHHHHHHHHhCCcE
Confidence            57888888864 69999999999999999998753        2334444444445556543

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=81.67  E-value=1.3  Score=33.74  Aligned_cols=34  Identities=12%  Similarity=0.165  Sum_probs=30.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccC
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE  194 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~  194 (433)
                      ++++++|+|+|-.+--++..|.+.+.+++++.|.
T Consensus        17 ~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~   50 (171)
T d1p77a1          17 PNQHVLILGAGGATKGVLLPLLQAQQNIVLANRT   50 (171)
T ss_dssp             TTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESS
T ss_pred             CCCEEEEECCcHHHHHHHHHHcccCceeeeccch
Confidence            5789999999999999999999888999998764

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.54  E-value=0.79  Score=35.02  Aligned_cols=34  Identities=24%  Similarity=0.214  Sum_probs=29.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccC
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPE  194 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~-~V~li~~~  194 (433)
                      ++.+|+|+|+|.+|+-++..+...|. +|.++++.
T Consensus        26 ~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~   60 (171)
T d1pl8a2          26 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLS   60 (171)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESC
T ss_pred             CCCEEEEECCCccHHHHHHHHHHcCCceEEeccCC
Confidence            57899999999999999999999998 67777643

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=81.53  E-value=1.1  Score=33.68  Aligned_cols=34  Identities=21%  Similarity=0.151  Sum_probs=31.1

Q ss_pred             CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      .-+.++|+|=|..|-.+|.+|+..|.+   |++.|.+
T Consensus        22 aGk~vvV~GYG~vGrG~A~~~rg~Ga~---V~V~E~D   55 (163)
T d1v8ba1          22 SGKIVVICGYGDVGKGCASSMKGLGAR---VYITEID   55 (163)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHHTCE---EEEECSC
T ss_pred             cCCEEEEecccccchhHHHHHHhCCCE---EEEEecC
Confidence            457999999999999999999999987   9999888

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=81.50  E-value=1  Score=34.62  Aligned_cols=33  Identities=9%  Similarity=0.173  Sum_probs=30.0

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      +.+|-|||-|.-|...|+.|.+.|++   |.+++++
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~G~~---V~v~dr~   34 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDHGFV---VCAFNRT   34 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCC---EEEECSS
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHCCCe---EEEEcCC
Confidence            35799999999999999999999998   8888877

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=81.47  E-value=0.92  Score=35.75  Aligned_cols=35  Identities=26%  Similarity=0.193  Sum_probs=31.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP  195 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~  195 (433)
                      .++++.|+|.|.+|.++|..+...|.+|..+++..
T Consensus        44 ~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~   78 (199)
T d1dxya1          44 GQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYP   78 (199)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cceeeeeeecccccccccccccccceeeeccCCcc
Confidence            46899999999999999999999999999988753

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=81.35  E-value=1  Score=35.18  Aligned_cols=34  Identities=18%  Similarity=0.256  Sum_probs=31.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccC
Q 013952          161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE  194 (433)
Q Consensus       161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~  194 (433)
                      .++++.|||-|.+|-++|..+...|.+|...++.
T Consensus        48 ~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~   81 (193)
T d1mx3a1          48 RGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPY   81 (193)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTT
T ss_pred             eCceEEEeccccccccceeeeeccccceeeccCc
Confidence            5789999999999999999999999999988764

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.28  E-value=1.2  Score=33.56  Aligned_cols=33  Identities=18%  Similarity=0.163  Sum_probs=30.3

Q ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      -+.++|||-|..|-.+|..++..|.+   |++.|..
T Consensus        24 Gk~v~V~GyG~iG~g~A~~~rg~G~~---V~v~e~d   56 (163)
T d1li4a1          24 GKVAVVAGYGDVGKGCAQALRGFGAR---VIITEID   56 (163)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSC
T ss_pred             CCEEEEeccccccHHHHHHHHhCCCe---eEeeecc
Confidence            47899999999999999999999987   8998877

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=81.17  E-value=2.5  Score=34.54  Aligned_cols=50  Identities=18%  Similarity=0.149  Sum_probs=35.8

Q ss_pred             CcE-EEECC-CHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEE
Q 013952          163 GKA-VVVGG-GYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKI  221 (433)
Q Consensus       163 ~~v-~ViG~-G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v  221 (433)
                      |+| +|.|+ +-+|..+|..|++.|.+|.+..+.         ++-.+.+.+.+++.|.++
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~---------~~~l~~~~~~i~~~g~~~   52 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYN---------DATAKAVASEINQAGGHA   52 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC---------HHHHHHHHHHHHHTTCCE
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECC---------HHHHHHHHHHHHhcCCcE
Confidence            466 55565 469999999999999999988753         344455566677776543

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=81.15  E-value=0.84  Score=35.04  Aligned_cols=33  Identities=9%  Similarity=0.026  Sum_probs=27.2

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      ..|+|+|+|..|++++..++..|..  .|++++.+
T Consensus        30 dtVlV~GaGG~G~~~~~~~~~~g~~--~Vi~~~~~   62 (176)
T d2jhfa2          30 STCAVFGLGGVGLSVIMGCKAAGAA--RIIGVDIN   62 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCS--EEEEECSC
T ss_pred             CEEEEECCCCcHHHHHHHHHHcCCc--eEEeecCc
Confidence            4699999999999999999998743  37777766

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=81.14  E-value=1  Score=34.54  Aligned_cols=31  Identities=26%  Similarity=0.422  Sum_probs=28.6

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952            7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         7 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   40 (433)
                      +|-|||-|.-|...|+.|.+.|++   |.+.|++
T Consensus         3 kIGvIGlG~MG~~ma~~L~~~G~~---V~~~dr~   33 (178)
T d1pgja2           3 DVGVVGLGVMGANLALNIAEKGFK---VAVFNRT   33 (178)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCC---EEEECSS
T ss_pred             EEEEEeehHHHHHHHHHHHHCCCe---EEEEECC
Confidence            699999999999999999999988   8888776

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=80.85  E-value=1.8  Score=36.42  Aligned_cols=62  Identities=15%  Similarity=-0.027  Sum_probs=43.8

Q ss_pred             CCCcEEEECCC-HHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEE
Q 013952          161 KNGKAVVVGGG-YIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKII  222 (433)
Q Consensus       161 ~~~~v~ViG~G-~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~  222 (433)
                      ++|.++|.|++ -+|..+|..|++.|.+|.+..+...........+..+.+.+.+...+....
T Consensus         6 ~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   68 (302)
T d1gz6a_           6 DGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAV   68 (302)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhhhhhHHHHHHHHHHHhhcccccc
Confidence            56777777754 699999999999999999987765433222345556666666777666554

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=80.60  E-value=1.6  Score=29.09  Aligned_cols=32  Identities=22%  Similarity=0.021  Sum_probs=25.1

Q ss_pred             CeEEEECCCHHHHHH-HHHHHHcCCCCCcEEEEcCC
Q 013952            6 FKYVILGGGVSAGYA-AREFAKQGVKPGELAIISKE   40 (433)
Q Consensus         6 ~dvvIIGgG~aGl~a-A~~l~~~g~~~~~V~lie~~   40 (433)
                      ++|=+||-|-+|+++ |..|.++|+.   |.--|..
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~~---VsGSD~~   34 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGND---VYGSNIE   34 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCE---EEEECSS
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCCe---EEEEeCC
Confidence            478899999999987 7888888987   6655544

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=80.49  E-value=3.2  Score=33.95  Aligned_cols=53  Identities=21%  Similarity=0.195  Sum_probs=39.1

Q ss_pred             CCCcEEEECCC-HHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEE
Q 013952          161 KNGKAVVVGGG-YIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKII  222 (433)
Q Consensus       161 ~~~~v~ViG~G-~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~  222 (433)
                      ++|.++|.|++ -+|..+|..|++.|.+|.+..+.         ++-.+.+.+.+++.|.+++
T Consensus         7 ~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~---------~~~l~~~~~~~~~~g~~~~   60 (259)
T d2ae2a_           7 EGCTALVTGGSRGIGYGIVEELASLGASVYTCSRN---------QKELNDCLTQWRSKGFKVE   60 (259)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC---------HHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC---------HHHHHHHHHHHHhcCCCce
Confidence            57888888875 69999999999999999988653         3333445555666666543

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=80.01  E-value=0.71  Score=37.16  Aligned_cols=30  Identities=27%  Similarity=0.249  Sum_probs=26.0

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCC-eEEEEcc
Q 013952          164 KAVVVGGGYIGLELSAALKINNI-DVSMVYP  193 (433)
Q Consensus       164 ~v~ViG~G~~g~e~a~~l~~~g~-~V~li~~  193 (433)
                      .++|||+|+.|+.+|..+++.|. +|.+++.
T Consensus         5 DviIIG~GpaGl~aA~~aa~~g~k~V~iie~   35 (238)
T d1aoga1           5 DLVVIGAGSGGLEAAWNAATLYKKRVAVIDV   35 (238)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTSCCCEEEEES
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCEEEEEEe
Confidence            58999999999999999999875 5777764