Citrus Sinensis ID: 013971

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430---
Protein Sequence
MSSTPGTHSLAFRVMRLCRPSLHVEPPLRVDPTDLFIGEDIFDDPIAASNLPPLISSDVTTNKSSDLTYRSRFLLHDSADSIGLSGLLVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTALYSDGEGERKYLPQFFKFIVSNPLSVRTKVRVVKEITFLEACIENHTKSNLYMDQVEFEPSQNWSATMLKADGPHSDYNAQSREIFKPPVLIRSGGGIHNYLYQLKMLSHGSSSPVKVQGSNVLGKLQITWRTNLGEPGRLQTQQILGTTITSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRITGITVFDKLEKITYDSLPDLE
Secondary Structure (PSIPRED)
cccccccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEccccccEEEEEEEEEEEcccEEEEEcccccccccccccccEEEEEEEEEcEEcccEEEEEEEEEEcccccEEEEEEEEEEEccccEEEEEEEEEEcccEEEEEEEEEcccccEEEEEEEEEEcccccEEEcccccccccccccccccccccEEEEccccEEEEEEEEEEcccccccccccccccccEEEEEEEEcccccccEEEEEEEEccccccccEEEEEEEcccEEEEcccEEEEEEEEEccccccccEEEEEEccccccccEEEEccccEEEEcccccccEEEEEEEEEEcccEEEEEccEEEEEccccEEEccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEEEEcccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEEEcccccEEEEEEEEEEEEccccEEEcccccccccccccccccccEEEEEEEHHcccEEEEEEEEEEcccccEEEEEEEEEEEEccccEEEEEEEcccccEEEEEEEEEcccccEEEEEEEEccccccEEEEcccccccccccccccccccccccEEccccEEEEEEEEEcccccccccccccccEEEEEEEEEEEcccccccEEEcccccccccccccEEEEEEEcccEEEEEEcEEEEEEEEEccccccccEEEEEEccccccEEEEEEcccEccccccccccccEEEEEEEEEccccEEEEcEEEEEEcccccEcccccccc
Coil and Loop (DISEMBL)
msstpgthsLAFRVMRlcrpslhvepplrvdptdlfigedifddpiaasnlpplissdvttnkssdltyRSRFLLhdsadsiglsgllvlpqafgaiylgeTFCSYISinnsstlevRDVVIKAEIQTDKQRILLLdtskspvesiraggrydfIVEHDVKELGAHTLVCTAlysdgegerkyLPQFFKFIvsnplsvrtKVRVVKEITFLEACIENhtksnlymdqvefepsqnwsatmlkadgphsdynaqsreifkppvlirsgggiHNYLYQLKmlshgssspvkvqgsnvlgklqitwrtnlgepgrlqtQQILGTTITSKEIElnvvevpsvvgidkpfllklkltnqtdkeqgpfeiwlsqndsdeekVVMINGLRIMalapveafgstdFHLNLIATKLGVQRITGITVFDKLekitydslpdle
Flexible Loop (DISEMBL)
msstpgthslAFRVMRLCrpslhvepplrvDPTDLFIGEDIFDDPIAasnlpplissdvttnksSDLTYRSRFLLHDSADSIGLSGLLVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAeiqtdkqrillldtskspvesiRAGGRYDFIVEHDVKELGAHTLVCTALYSDGEGERKYLPQFFKFivsnplsvrtKVRVVKEITFLEACIENHTKSNLYMDQVEFEPSQNWSATMLKADGPHSDYNAQSREIFKPPVLIRSGGGIHNYLYQLKMLSHGSSSPVKVQGSNVLGKLQITWrtnlgepgrlqtQQILGTTITSKEIELNVVEVPSVVGIDKPFLLKLKLtnqtdkeqgpfeiwlsqndsdEEKVVMINGLRIMALAPVEAFGSTDFHLNLIATKlgvqritgitvfdklekitydslpdle
Low Complexity Region (SEG)
MSSTPGTHSLAFRVMRLCRPSLHVEPPLRVDPTDLFIGEDIFDDPIAASNLPPLISSDVTTNKSSDLTYRSRFLLHDSADSIGLSGLLVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTALYSDGEGERKYLPQFFKFIVSNPLSVRTKVRVVKEITFLEACIENHTKSNLYMDQVEFEPSQNWSATMLKADGPHSDYNAQSREIFKPPVLIRSGGGIHNYLYQLKMLSHGSSSPVKVQGSNVLGKLQITWRTNLGEPGRlqtqqilgttitSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRITGITVFDKLEKITYDSLPDLE
Disordered region (IsUnstruct)
*********LAFRVMRLCRPSLHVEPPLRVDPTDLFIGEDIFDDPIAASNLPPLIS*********DLTYRSRFLLHDSADSIGLSGLLVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTALYSDGEGERKYLPQFFKFIVSNPLSVRTKVRVVKEITFLEACIENHTKSNLYMDQVEF*************************EIFKPPVLIRSGGGIHNYLYQLKMLSHG****VKVQGSNVLGKLQITWRTNLGEPGRLQTQQILGTTITSKEIELNVVEVPSVVGIDKPFLLKLKLTN*********EIW**********VVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRITGITVFDKLEKITY*******
Disordered Region (DISOPRED)
******T**LAFRVMRLCRPSLHVEPPLRVDPTDLFIGE*****************************************SIGLSGLLVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTD********************GRYDFIVEHDVKELGAHTLVCTALYSDGEGERKYLPQFFKFIVSNPLSVRTKVRVVKEITFLEACIENHTKSNLYMDQVEFEPSQNWSATM********************PVLIRSGGGIHNYLYQLK***************NVLGKLQITWRTNLGEPGRLQTQQILGTTITSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRITGITVFDKLEKITYDSLPD**
Disordered Region (DISEMBL)
MSSTPGTHSLAFRVMRLCRPSLHVEPPLRVDPTDLFIGEDIFDDPIAASNLPPLISSDVTTNKSSDLTYRSRFLLHDSADSIGLSGLLVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTALYSDGEGERKYLPQFFKFIVSNPLSVRTKVRVVKEITFLEACIENHTKSNLYMDQVEFEPSQNWSATMLKADGPHSDYNAQSREIFKPPVLIRSGGGIHNYLYQLKMLSH********QGSNVLGKLQITWRTNLGEPGRLQTQQILGTTITSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRITGITVFDKLEKITYDSLPDLE
Disordered Region (DISPRO)
*****GTHSLAFRVMRLCRPSLHVEPPLRVDPTDLFIGE**************************************SADSIGLSGLLVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTALYSDGEGERKYLPQFFKFIVSNPLSVRTKVRVVKEITFLEACIENHTKSNLYMDQVEFEPSQNWSATMLKA***********REIFKPPVLIRSGGGIHNYLYQLKMLSHGSSSPVKVQGSNVLGKLQITWRTNLGEPGRLQTQQILGTTITSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRITGITVFDKLEKITYDSL****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSTPGTHSLAFRVMRLCRPSLHVEPPLRVDPTDLFIGEDIFDDPIAASNLPPLISSDVTTNKSSDLTYRSRFLLHDSADSIGLSGLLVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTALYSDGEGERKYLPQFFKFIVSNPLSVRTKVRVVKEITFLEACIENHTKSNLYMDQVEFEPSQNWSATMLKADGPHSDYNAQSREIFKPPVLIRSGGGIHNYLYQLKMLSHGSSSPVKVQGSNVLGKLQITWRTNLGEPGRLQTQQILGTTITSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRITGITVFDKLEKITYDSLPDLE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	433	2.2.26 [Sep-21-2011]
Q6PBY7	412	UPF0533 protein C5orf44 h	yes	no	0.872	0.917	0.330	1e-52
Q5RCG0	417	UPF0533 protein C5orf44 h	yes	no	0.870	0.904	0.321	6e-52
A5PLN9	417	UPF0533 protein C5orf44 O	yes	no	0.870	0.904	0.318	7e-52
A7MB76	417	UPF0533 protein C5orf44 h	yes	no	0.870	0.904	0.314	1e-50
Q3TIR1	417	UPF0533 protein C5orf44 h	yes	no	0.879	0.913	0.319	1e-50
Q5M887	418	UPF0533 protein C5orf44 h	yes	no	0.882	0.913	0.319	3e-50
Q0VFT9	412	UPF0533 protein C5orf44 h	yes	no	0.879	0.924	0.323	8e-50
Q6GPR5	414	UPF0533 protein C5orf44 h	N/A	no	0.884	0.925	0.320	3e-48
A8WX89	401	UPF0533 protein CBG04321	N/A	no	0.868	0.937	0.303	1e-46
Q95QQ2	401	UPF0533 protein C56C10.7	yes	no	0.870	0.940	0.294	2e-46

>sp|Q6PBY7|CE044_DANRE UPF0533 protein C5orf44 homolog OS=Danio rerio GN=zgc:73187 PE=2 SV=2

 Score =  207 bits (527), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 141/427 (33%), Positives = 222/427 (51%), Gaps = 49/427 (11%)

Query: 8   HSLAFRVMRLCRPSLHVEPPLRVD----PTDLFIGEDIFDDPIAASNLPPLISSDVTTNK 63
           H LA +VMRL +P+L    P+  +    P DLF+                L+  D +T K
Sbjct: 10  HLLALKVMRLTKPTLFTNMPVTCEDRDLPGDLFLR---------------LMKDDPSTVK 54

Query: 64  SSDLTYRSRFLLHDSADSIGLSGLLVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIK 123
                          A+++ L  +L LPQ FG I+LGETF SYIS++N S+  V+D+++K
Sbjct: 55  G--------------AETLILGEMLTLPQNFGNIFLGETFSSYISVHNDSSQVVKDILVK 100

Query: 124 AEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTALYSDGEGERKY 183
           A++QT  QR L L  S S V  ++     D ++ H+VKE+G H LVC   Y+   GE+ Y
Sbjct: 101 ADLQTSSQR-LNLSASNSAVSELKPECCIDDVIHHEVKEIGTHILVCAVSYTTQTGEKLY 159

Query: 184 LPQFFKFIVSNPLSVRTKVRVVK-EITFLEACIENHTKSNLYMDQVEFEPSQNWSATMLK 242
             +FFKF V  PL V+TK    + +  FLEA I+N T S ++M++V  EPS  ++ T L 
Sbjct: 160 FRKFFKFQVLKPLDVKTKFYNAETDEVFLEAQIQNITTSPMFMEKVSLEPSMMYNVTELN 219

Query: 243 --ADGPHSDYNAQSREIFKPPVLIRSGGGIHNYLYQLKMLSHGSSSPVKVQGSNVLGKLQ 300
             A G  S  +   +  +  P+  R       YLY LK     +     ++G  V+GKL 
Sbjct: 220 NVASGDESSESTFGKMSYLQPLDTR------QYLYCLKPKPEFAEKAGVIKGVTVIGKLD 273

Query: 301 ITWRTNLGEPGRLQTQQILGTTITSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQG 360
           I W+TNLGE GRLQT Q+        ++ L++  +P  V +++PF +  K+TN +++   
Sbjct: 274 IVWKTNLGERGRLQTSQLQRMAPGYGDVRLSLEFIPDTVDLEEPFDITCKITNCSERT-- 331

Query: 361 PFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRITGITVFDK 420
             ++ L   ++       ++G ++  L+P     S    L L+++  G+Q I+G+ + D 
Sbjct: 332 -MDLLLEMCNTRSVHWCGVSGRQLGKLSPS---ASLSIPLKLLSSVQGLQSISGLRLTDT 387

Query: 421 LEKITYD 427
             K TY+
Sbjct: 388 FLKRTYE 394

Danio rerio (taxid: 7955)

>sp|Q5RCG0|CE044_PONAB UPF0533 protein C5orf44 homolog OS=Pongo abelii PE=2 SV=1

 Score =  205 bits (521), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 139/433 (32%), Positives = 217/433 (50%), Gaps = 56/433 (12%)

Query: 8   HSLAFRVMRLCRPSLHVEPPLRVD----PTDLFIGEDIFDDPIAASNLPPLISSDVTTNK 63
           H LA +VMRL +P+L    P+  +    P DLF  + + DDP                  
Sbjct: 10  HLLALKVMRLTKPTLFTNIPVTCEERDLPGDLF-NQLMRDDPSTV--------------- 53

Query: 64  SSDLTYRSRFLLHDSADSIGLSGLLVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIK 123
                        + A+ + L  +L LPQ FG I+LGETF SYIS++N S   V+D+++K
Sbjct: 54  -------------NGAEVLMLGEMLTLPQNFGNIFLGETFSSYISVHNDSNQVVKDILVK 100

Query: 124 AEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTALYSDGEGERKY 183
           A++QT  QR L L  S + V  ++     D ++ H+VKE+G H LVC   Y+   GE+ Y
Sbjct: 101 ADLQTSSQR-LNLSASNAAVAELKPDCCIDDVIHHEVKEIGTHILVCAVSYTTQAGEKMY 159

Query: 184 LPQFFKFIVSNPLSVRTK-------VRVVKEITFLEACIENHTKSNLYMDQVEFEPSQNW 236
             +FFKF V  PL V+TK       +  V +  FLEA I+N T S ++M++V  EPS  +
Sbjct: 160 FRKFFKFQVLKPLDVKTKFYNAESDLSSVTDEVFLEAQIQNMTTSPMFMEKVSLEPSIMY 219

Query: 237 SATMLKA--DGPHSDYNAQSREIFKPPVLIRSGGGIHNYLYQLKMLSHGSSSPVKVQGSN 294
           + T L +      S     SR   +P            YLY LK     +     ++G  
Sbjct: 220 NVTELNSVSQAGESVSTFGSRAYLQP-------MDTRQYLYCLKPKKEFAEKAGIIKGVT 272

Query: 295 VLGKLQITWRTNLGEPGRLQTQQILGTTITSKEIELNVVEVPSVVGIDKPFLLKLKLTNQ 354
           V+GKL I W+TNLGE GRLQT Q+        ++ L++  +P  V +++PF +  K+TN 
Sbjct: 273 VIGKLDIVWKTNLGERGRLQTSQLQRMAPGYGDVRLSLEAIPDTVNLEEPFHITCKITNC 332

Query: 355 TDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRITG 414
           +++     ++ L   +++      I+G ++  L P  +       L L+++  G+Q I+G
Sbjct: 333 SER---TMDLVLEMCNTNSIHWCGISGRQLGKLHPSSSLC---LALTLLSSVQGLQSISG 386

Query: 415 ITVFDKLEKITYD 427
           + + D   K TY+
Sbjct: 387 LRLTDTFLKRTYE 399

Pongo abelii (taxid: 9601)

>sp|A5PLN9|CE044_HUMAN UPF0533 protein C5orf44 OS=Homo sapiens GN=C5orf44 PE=2 SV=2

 Score =  204 bits (520), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 138/433 (31%), Positives = 219/433 (50%), Gaps = 56/433 (12%)

Query: 8   HSLAFRVMRLCRPSLHVEPPLRVD----PTDLFIGEDIFDDPIAASNLPPLISSDVTTNK 63
           H LA +VMRL +P+L    P+  +    P DLF  + + DDP                  
Sbjct: 10  HLLALKVMRLTKPTLFTNIPVTCEEKDLPGDLF-NQLMRDDPSTV--------------- 53

Query: 64  SSDLTYRSRFLLHDSADSIGLSGLLVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIK 123
                        + A+ + L  +L LPQ FG I+LGETF SYIS++N S   V+D+++K
Sbjct: 54  -------------NGAEVLMLGEMLTLPQNFGNIFLGETFSSYISVHNDSNQVVKDILVK 100

Query: 124 AEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTALYSDGEGERKY 183
           A++QT  QR L L  S + V  ++     D ++ H+VKE+G H LVC   Y+   GE+ Y
Sbjct: 101 ADLQTSSQR-LNLSASNAAVAELKPDCCIDDVIHHEVKEIGTHILVCAVSYTTQAGEKMY 159

Query: 184 LPQFFKFIVSNPLSVRTK-------VRVVKEITFLEACIENHTKSNLYMDQVEFEPSQNW 236
             +FFKF V  PL V+TK       +  V +  FLEA I+N T S ++M++V  EPS  +
Sbjct: 160 FRKFFKFQVLKPLDVKTKFYNAESDLSSVTDEVFLEAQIQNMTTSPMFMEKVSLEPSIMY 219

Query: 237 SATMLKADGPHSDYNAQ--SREIFKPPVLIRSGGGIHNYLYQLKMLSHGSSSPVKVQGSN 294
           + T L +     +  +   SR   +P            YLY LK  +  +     ++G  
Sbjct: 220 NVTELNSVSQAGECVSTFGSRAYLQP-------MDTRQYLYCLKPKNEFAEKAGIIKGVT 272

Query: 295 VLGKLQITWRTNLGEPGRLQTQQILGTTITSKEIELNVVEVPSVVGIDKPFLLKLKLTNQ 354
           V+GKL I W+TNLGE GRLQT Q+        ++ L++  +P  V +++PF +  K+TN 
Sbjct: 273 VIGKLDIVWKTNLGERGRLQTSQLQRMAPGYGDVRLSLEAIPDTVNLEEPFHITCKITNC 332

Query: 355 TDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRITG 414
           +++     ++ L   +++      I+G ++  L P  +       L L+++  G+Q I+G
Sbjct: 333 SER---TMDLVLEMCNTNSIHWCGISGRQLGKLHPSSSLC---LALTLLSSVQGLQSISG 386

Query: 415 ITVFDKLEKITYD 427
           + + D   K TY+
Sbjct: 387 LRLTDTFLKRTYE 399

Homo sapiens (taxid: 9606)

>sp|A7MB76|CE044_BOVIN UPF0533 protein C5orf44 homolog OS=Bos taurus PE=2 SV=1

 Score =  201 bits (510), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 136/433 (31%), Positives = 216/433 (49%), Gaps = 56/433 (12%)

Query: 8   HSLAFRVMRLCRPSLHVEPPLRVD----PTDLFIGEDIFDDPIAASNLPPLISSDVTTNK 63
           H LA +VMRL +P+L    P+  +    P DLF  + + DDP                  
Sbjct: 10  HLLALKVMRLTKPTLFTNIPVTCEEKDLPGDLF-NQLMRDDPSTV--------------- 53

Query: 64  SSDLTYRSRFLLHDSADSIGLSGLLVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIK 123
                        + A+ + L  +L LPQ FG I+LGETF SYIS++N S   V+D+++K
Sbjct: 54  -------------NGAEILMLGEMLTLPQNFGNIFLGETFSSYISVHNDSNQVVKDILVK 100

Query: 124 AEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTALYSDGEGERKY 183
           A++QT  QR L L  S + V  ++     D ++ H+VKE+G H LVC   Y+   GE+ Y
Sbjct: 101 ADLQTSSQR-LNLSASNAAVAELKPDCCIDDVIHHEVKEIGTHILVCAVSYTTQSGEKMY 159

Query: 184 LPQFFKFIVSNPLSVRTK-------VRVVKEITFLEACIENHTKSNLYMDQVEFEPSQNW 236
             +FFKF V  PL V+TK       +  V +  FLEA I+N T S ++M++V  EPS  +
Sbjct: 160 FRKFFKFQVLKPLDVKTKFYNAESDLSSVTDEVFLEAQIQNITTSPMFMEKVSLEPSIMY 219

Query: 237 SATMLKADGPHSDYNAQ--SREIFKPPVLIRSGGGIHNYLYQLKMLSHGSSSPVKVQGSN 294
           +   L +     +      SR   +P            YLY LK     +     ++G  
Sbjct: 220 NVAELNSVNQAGECVTTFGSRAYLQP-------MDTRQYLYCLKPKKEFAEKAGIIKGVT 272

Query: 295 VLGKLQITWRTNLGEPGRLQTQQILGTTITSKEIELNVVEVPSVVGIDKPFLLKLKLTNQ 354
           V+GKL I W+TNLGE GRLQT Q+        ++ L++  +P  V +++PF +  K+TN 
Sbjct: 273 VIGKLDIVWKTNLGERGRLQTSQLQRMAPGYGDVRLSLEAIPDTVNLEEPFHITCKITNC 332

Query: 355 TDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRITG 414
           +++     ++ L   +++      I+G ++  L P  +       L L+++  G+Q ++G
Sbjct: 333 SER---TMDLVLEMCNTNSIHWCGISGRQLGKLHPSSSLC---LALTLLSSVQGLQSVSG 386

Query: 415 ITVFDKLEKITYD 427
           + + D   K TY+
Sbjct: 387 LRLTDTFLKRTYE 399

Bos taurus (taxid: 9913)

>sp|Q3TIR1|CE044_MOUSE UPF0533 protein C5orf44 homolog OS=Mus musculus PE=2 SV=1

 Score =  201 bits (510), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 137/429 (31%), Positives = 220/429 (51%), Gaps = 48/429 (11%)

Query: 8   HSLAFRVMRLCRPSLHVEPPLRVDPTDLFIGEDIFDDPIAASNLPPLISSDVTTNKSSDL 67
           H LA +VMRL +P+L    P+  +  DL    D+F+          L+  D +T      
Sbjct: 10  HLLALKVMRLTKPTLFTNIPVTCEEKDL--PGDLFNQ---------LMKDDPST------ 52

Query: 68  TYRSRFLLHDSADSIGLSGLLVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQ 127
                    + A+ + L  +L LPQ FG I+LGETF SYIS++N S   V+D+++KA++Q
Sbjct: 53  --------VNGAEILMLGEMLTLPQNFGNIFLGETFSSYISVHNDSNQVVKDILVKADLQ 104

Query: 128 TDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTALYSDGEGERKYLPQF 187
           T  QR L L  S + V  ++     D ++ H+VKE+G H LVC   Y+   GE+ Y  +F
Sbjct: 105 TSSQR-LNLSASNAAVAELKPDCCIDDVIHHEVKEIGTHILVCAVSYTTQGGEKMYFRKF 163

Query: 188 FKFIVSNPLSVRTK-------VRVVKEITFLEACIENHTKSNLYMDQVEFEPSQNWSATM 240
           FKF V  PL V+TK       +  V +  FLEA I+N T S ++M++V  EPS  ++ T 
Sbjct: 164 FKFQVLKPLDVKTKFYNAESDLSSVTDEVFLEAQIQNITTSPMFMEKVSLEPSIMYNVTE 223

Query: 241 LKADGPHSDYNAQ--SREIFKPPVLIRSGGGIHNYLYQLKMLSHGSSSPVKVQGSNVLGK 298
           L +     +  +   SR   +P            YLY LK     +     ++G  V+GK
Sbjct: 224 LNSVTQAGECISTFGSRGYLQPM-------DTRQYLYCLKPKKEFAEKAGIIKGVTVIGK 276

Query: 299 LQITWRTNLGEPGRLQTQQILGTTITSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKE 358
           L I W+TNLGE GRLQT Q+        ++ L++  +P  V +++PF +  K+TN +++ 
Sbjct: 277 LDIVWKTNLGERGRLQTSQLQRMAPGYGDVRLSLEAIPDTVNLEEPFHITCKITNCSERM 336

Query: 359 QGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRITGITVF 418
               ++ L   +++      I+G ++  L P  +       L L+++  G+Q ++G+ + 
Sbjct: 337 ---MDLVLEMCNTNSIHWCGISGRQLGKLHPSSSLC---LALTLLSSVQGLQSVSGLRLT 390

Query: 419 DKLEKITYD 427
           D   K TY+
Sbjct: 391 DTFLKRTYE 399

Mus musculus (taxid: 10090)

>sp|Q5M887|CE044_RAT UPF0533 protein C5orf44 homolog OS=Rattus norvegicus PE=2 SV=2

 Score =  199 bits (506), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 137/429 (31%), Positives = 218/429 (50%), Gaps = 47/429 (10%)

Query: 8   HSLAFRVMRLCRPSLHVEPPLRVDPTDLFIGEDIFDDPIAASNLPPLISSDVTTNKSSDL 67
           H LA +VMRL +P+L    P+  +  DL    D+F+          L+  D +T      
Sbjct: 10  HLLALKVMRLTKPTLFTNIPVTCEEKDL--PGDLFNQ---------LMKDDPST------ 52

Query: 68  TYRSRFLLHDSADSIGLSGLLVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQ 127
                    + A+ + L  +L LPQ FG I+LGETF SYIS++N S   V+D+++KA++Q
Sbjct: 53  --------VNGAEILMLGEMLTLPQNFGNIFLGETFSSYISVHNDSNQVVKDILVKADLQ 104

Query: 128 TDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTALYSDGEGERKYLPQF 187
           T  QR L L  S + V  ++     D ++ H+VKE+G H LVC   Y+   GE+ Y  +F
Sbjct: 105 TSSQR-LNLSASNAAVAELKPDCCIDDVIHHEVKEIGTHILVCAVSYTTQGGEKMYFRKF 163

Query: 188 FKFIVSNPLSVRTK-------VRVVKEITFLEACIENHTKSNLYMDQVEFEPSQNWSATM 240
           FKF V  PL V+TK       +  V +  FLEA I+N T S ++M++V  EPS  ++ T 
Sbjct: 164 FKFQVLKPLDVKTKFYNAESDLSSVTDEVFLEAQIQNITTSPMFMEKVSLEPSIMYNVTE 223

Query: 241 LKADGPHSDYNAQ--SREIFKPPVLIRSGGGIHNYLYQLKMLSHGSSSPVKVQGSNVLGK 298
           L +     +  +   SR   +P            YLY LK     +     ++G  V+GK
Sbjct: 224 LNSVNQAGECVSTFGSRGYLQPM-------DTRQYLYCLKPKKEFAEKAGIIKGVTVIGK 276

Query: 299 LQITWRTNLGEPGRLQTQQILGTTITSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKE 358
           L I W+TNLGE GRLQT Q+        ++ L++  +P  V +++PF +  K+TN + + 
Sbjct: 277 LDIVWKTNLGERGRLQTSQLQRMAPGYGDVRLSLEAIPDTVNLEEPFHITCKITNCSSER 336

Query: 359 QGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRITGITVF 418
               ++ L   ++       I+G ++  L P  +       L L+++  G+Q ++G+ + 
Sbjct: 337 T--MDLVLEMCNTTSIHWCGISGRQLGKLHPSSSLC---LALTLLSSVQGLQSVSGLRLT 391

Query: 419 DKLEKITYD 427
           D   K TY+
Sbjct: 392 DTFLKRTYE 400

Rattus norvegicus (taxid: 10116)

>sp|Q0VFT9|CE044_XENTR UPF0533 protein C5orf44 homolog OS=Xenopus tropicalis PE=2 SV=1

 Score =  198 bits (503), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 137/424 (32%), Positives = 220/424 (51%), Gaps = 43/424 (10%)

Query: 8   HSLAFRVMRLCRPSLHVEPPLRVDPTDLFIGEDIFDDPIAASNLPPLISSDVTTNKSSDL 67
           H LA +VMRL +P+L    P+  +  DL    D+F           L+  D +T K    
Sbjct: 10  HLLALKVMRLTKPTLFTNIPVTCEERDL--PGDLFS---------TLMKDDPSTVKG--- 55

Query: 68  TYRSRFLLHDSADSIGLSGLLVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQ 127
                      A+++ L  +L LPQ FG I+LGETF SYIS++N S   V+D+ +KA++Q
Sbjct: 56  -----------AETLMLGEMLTLPQNFGNIFLGETFSSYISVHNDSNQVVKDIQVKADLQ 104

Query: 128 TDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTALYSDGEGERKYLPQF 187
           T  QR L L  S + V  ++     D ++ H+VKE+G H LVC   Y+   GE+ Y  +F
Sbjct: 105 TSSQR-LNLSASTAVVSELKPDSCIDDVIHHEVKEIGTHILVCAVSYTTQTGEKMYFRKF 163

Query: 188 FKFIVSNPLSVRTKVRVVK-EITFLEACIENHTKSNLYMDQVEFEPSQNWSATMLKADGP 246
           FKF V  PL V+TK    + +  FLEA I+N T S ++M++V  EPS  ++ + L     
Sbjct: 164 FKFQVLKPLDVKTKFYNAETDEVFLEAQIQNITTSPMFMEKVSLEPSIMYNVSELNTVIT 223

Query: 247 HSD-YNAQSREIFKPPVLIRSGGGIHNYLYQLKMLSHGSSSPVKVQGSNVLGKLQITWRT 305
           + D  +    + +  P+  R       YLY LK     +     ++G  V+GKL I W+T
Sbjct: 224 NGDGCSTFGTKTYLQPLDTR------QYLYCLKPKPEFAEKAGVIKGVTVIGKLDIVWKT 277

Query: 306 NLGEPGRLQTQQILGTTITSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIW 365
           NLGE GRLQT Q+        ++ L++  +P  V +++PF +  K+TN + +     ++ 
Sbjct: 278 NLGERGRLQTSQLQRMAPGYGDVRLSIETIPDTVRLEEPFDITCKITNCSSERT--MDLV 335

Query: 366 LSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLN--LIATKLGVQRITGITVFDKLEK 423
           L   +++      ++G ++  L P     S+  HL   L+++  G+Q ++G+ + D   K
Sbjct: 336 LEMCNTNAIHWCGVSGRQLGKLHP-----SSSLHLTLALLSSVQGLQSVSGLRLTDTFLK 390

Query: 424 ITYD 427
            TY+
Sbjct: 391 RTYE 394

Xenopus tropicalis (taxid: 8364)

>sp|Q6GPR5|CE044_XENLA UPF0533 protein C5orf44 homolog OS=Xenopus laevis PE=2 SV=2

 Score =  192 bits (489), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 136/424 (32%), Positives = 218/424 (51%), Gaps = 41/424 (9%)

Query: 8   HSLAFRVMRLCRPSLHVEPPLRVDPTDLFIGEDIFDDPIAASNLPPLISSDVTTNKSSDL 67
           H LA +VMRL +P+L    P+  +  DL    D+F           L+  D +T K +++
Sbjct: 10  HLLALKVMRLTKPTLFTNIPVTCEEKDL--PGDLFS---------TLMKDDPSTVKGAEI 58

Query: 68  TYRSRFLLHDSADSIGLSGLLVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQ 127
                         + L  +L LPQ FG I+LGETF SYIS++N S   V+DV +KA++Q
Sbjct: 59  --------------LMLGEMLTLPQNFGNIFLGETFSSYISVHNDSNQVVKDVQVKADLQ 104

Query: 128 TDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTALYSDGEGERKYLPQF 187
           T  QR L L  S + V  ++     D ++ H+VKE+G H LVC   Y+   GE+ Y  +F
Sbjct: 105 TSSQR-LNLSASSAVVADLKPDSCIDDVIHHEVKEIGTHILVCAVSYTIQSGEKMYFRKF 163

Query: 188 FKFIVSNPLSVRTKVRVVK-EITFLEACIENHTKSNLYMDQVEFEPSQNWSATMLKADGP 246
           FKF V  PL V+TK    + +  FLEA I+N T S ++M++V  EPS  ++ + L     
Sbjct: 164 FKFQVLKPLDVKTKFYNAETDEVFLEAQIQNITTSPMFMEKVSLEPSIMYNVSELNTVIT 223

Query: 247 HSDYNAQSR---EIFKPPVLIRSGGGIHNYLYQLKMLSHGSSSPVKVQGSNVLGKLQITW 303
           + D+   S    + +  P+  R       YLY LK     +     ++G  V+GKL I W
Sbjct: 224 NGDWKGSSTFGTKTYLQPLDTR------QYLYCLKPKPEFAEKAGVIKGVTVIGKLDIVW 277

Query: 304 RTNLGEPGRLQTQQILGTTITSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFE 363
           +TNLGE GRLQT Q+        ++ L++  +P  V +++PF +  K+TN + +     +
Sbjct: 278 KTNLGERGRLQTSQLQRMAPGYGDVRLSIETIPDTVRLEEPFDITCKITNCSSERT--MD 335

Query: 364 IWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRITGITVFDKLEK 423
           + L   +++      ++G ++  L P  +   T   L+ +    G+Q ++G+ + D   K
Sbjct: 336 LVLEMCNTNAIHWSGVSGRQLGKLHPSSSLHLTLTLLSSVQ---GLQSVSGLRLTDTFLK 392

Query: 424 ITYD 427
            TY+
Sbjct: 393 RTYE 396

Xenopus laevis (taxid: 8355)

>sp|A8WX89|U533_CAEBR UPF0533 protein CBG04321 OS=Caenorhabditis briggsae GN=CBG04321 PE=3 SV=2

 Score =  187 bits (476), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 133/438 (30%), Positives = 218/438 (49%), Gaps = 62/438 (14%)

Query: 1   MSSTPGTHSLAFRVMRLCRPSLHVEPPLRVDPTDLFIGEDIFDDPIAASNLPPLISSDVT 60
           +S++     LA RVMRL RP        +  P D F       DP+  +    L++  V 
Sbjct: 5   ISNSSTQQLLALRVMRLARP--------KFAPLDGFS-----HDPVDPTGFGELLAGKV- 50

Query: 61  TNKSSDLTYRSRFLLHDSADSIGLSGLLVLPQAFGAIYLGETFCSYISINNSSTLEVRDV 120
               ++++  SR   HD    + +   L+ PQ F  IYLGETF  Y+++ N S   V +V
Sbjct: 51  ----AEISKESR---HD----LPIGEYLIAPQMFENIYLGETFTFYVNVVNESESNVVNV 99

Query: 121 VIKAEIQTDKQRILL-LDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTALYSDGEG 179
            +K E+QT  QR++L        +ES +  G+   ++ H+VKE+G H L+C+  Y    G
Sbjct: 100 SLKCELQTSTQRVVLPCSVQDVTIESTKCDGQ---VISHEVKEIGQHILICSVNYKTLSG 156

Query: 180 ERKYLPQFFKFIVSNPLSVRTKVRVVK----EITFLEACIENHTKSNLYMDQVEFEPSQN 235
           E  Y  +FFKF VS P+ V+TK    +    +  +LEA IEN + SN+++++VE +PSQ+
Sbjct: 157 ENMYFRKFFKFPVSKPIDVKTKFYSAEDNANQDVYLEAQIENTSNSNMFLERVELDPSQH 216

Query: 236 WSATMLKADGPHSDYNAQSREIFKPPVLIRSGGGIHNYLYQLKMLSHGSSSPVKVQGS-- 293
           +  T +     H D   +  ++ KP         I  +L+ L        SPV V  +  
Sbjct: 217 YKVTSIS----HEDEFPEVGKLLKP-------KDIRQFLFCL--------SPVDVNNTLG 257

Query: 294 ----NVLGKLQITWRTNLGEPGRLQTQQILGTTITSKEIELNVVEVPSVVGIDKPFLLKL 349
                 +GKL ++WRT++GE GRLQT  +        ++ L+V + P+ V + KPF +  
Sbjct: 258 YKDLTSIGKLDMSWRTSMGEKGRLQTSALQRIAPGYGDVRLSVEKTPACVDVQKPFEVAC 317

Query: 350 KLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIATKLGV 409
           +L N +++     ++ L Q  + +  +   +G+ +  L P       DF LN+    +G+
Sbjct: 318 RLYNCSERALD-LQLRLEQPSNRQLVICSPSGVSLGQLPPSRY---VDFALNVFPVAVGI 373

Query: 410 QRITGITVFDKLEKITYD 427
           Q I+GI + D   K  Y+
Sbjct: 374 QSISGIRITDTFTKRHYE 391

Caenorhabditis briggsae (taxid: 6238)

>sp|Q95QQ2|U533_CAEEL UPF0533 protein C56C10.7 OS=Caenorhabditis elegans GN=C56C10.7 PE=1 SV=1

 Score =  186 bits (473), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 130/441 (29%), Positives = 214/441 (48%), Gaps = 64/441 (14%)

Query: 1   MSSTPGTHS----LAFRVMRLCRPSLHVEPPLRVDPTDLFIGEDIFDDPIAASNLPPLIS 56
           M+  P + S    LA RVMRL RP        +  P D F       DP+  +    L++
Sbjct: 1   MADNPASSSSQQLLALRVMRLARP--------KFAPVDGFS-----HDPVDPTGFGELLA 47

Query: 57  SDVTTNKSSDLTYRSRFLLHDSADSIGLSGLLVLPQAFGAIYLGETFCSYISINNSSTLE 116
             V     S+++  SR         + +   L+ PQ F  IYLGETF  Y+++ N S   
Sbjct: 48  GKV-----SEISKESR-------QDLPIGEYLIAPQMFENIYLGETFTFYVNVVNESEKT 95

Query: 117 VRDVVIKAEIQTDKQRILL-LDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTALYS 175
           V  V +K E+QT  QR++L      + +ES +  G+   ++ H+VKE+G H L+C+  Y 
Sbjct: 96  VSSVSLKCELQTSTQRVVLPCSVQDATIESSKCEGQ---VISHEVKEIGQHILICSVNYK 152

Query: 176 DGEGERKYLPQFFKFIVSNPLSVRTKVRVVK----EITFLEACIENHTKSNLYMDQVEFE 231
              GE  Y  +FFKF VS P+ V+TK    +    +  +LEA IEN + +N+++++VE +
Sbjct: 153 TSNGENMYFRKFFKFPVSKPIDVKTKFYSAEDNANQDVYLEAQIENTSNANMFLEKVELD 212

Query: 232 PSQNWSATMLKADGPHSDYNAQSREIFKPP-----VLIRSGGGIHNYLYQLKMLSHGSSS 286
           PSQ+++ T +     H D      ++ KP      +   +   +HN L    + S     
Sbjct: 213 PSQHYNVTSIA----HEDEFGDVGKLLKPKDIRQFLFCLTPADVHNTLGYKDLTS----- 263

Query: 287 PVKVQGSNVLGKLQITWRTNLGEPGRLQTQQILGTTITSKEIELNVVEVPSVVGIDKPFL 346
                    +GKL ++WRT++GE GRLQT  +        ++ L+V + P+ V + KPF 
Sbjct: 264 ---------IGKLDMSWRTSMGEKGRLQTSALQRIAPGYGDVRLSVEKTPACVDVQKPFE 314

Query: 347 LKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIATK 406
           +  +L N +++     ++ L Q  +        +G+ +  L P +     DF LN+    
Sbjct: 315 VSCRLYNCSERALD-LQLRLEQPSNRHLVFCSPSGVSLGQLPPSQ---HVDFSLNVFPVT 370

Query: 407 LGVQRITGITVFDKLEKITYD 427
           +G+Q I+GI + D   K  Y+
Sbjct: 371 VGIQSISGIRITDTFTKRIYE 391

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	433
255556003	434	expressed protein, putative [Ricinus com	0.986	0.983	0.774	0.0
225470348	438	PREDICTED: UPF0533 protein C5orf44 [Viti	0.997	0.986	0.773	0.0
356548745	440	PREDICTED: UPF0533 protein C5orf44 homol	0.976	0.961	0.758	0.0
449457717	440	PREDICTED: UPF0533 protein C5orf44-like	1.0	0.984	0.723	0.0
224079249	450	predicted protein [Populus trichocarpa]	0.983	0.946	0.739	0.0
356521339	435	PREDICTED: UPF0533 protein C5orf44-like	0.967	0.963	0.742	0.0
388496064	437	unknown [Medicago truncatula]	0.965	0.956	0.725	1e-180
358346667	446	hypothetical protein MTR_084s0010 [Medic	0.965	0.937	0.710	1e-177
297824907	443	hypothetical protein ARALYDRAFT_483987 [	0.993	0.970	0.680	1e-168
18407493	442	uncharacterized protein [Arabidopsis tha	0.990	0.970	0.679	1e-168

>gi|255556003|ref|XP_002519036.1| expressed protein, putative [Ricinus communis] gi|223541699|gb|EEF43247.1| expressed protein, putative [Ricinus communis]

 Score =  699 bits (1803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/434 (77%), Positives = 380/434 (87%), Gaps = 7/434 (1%)

Query: 1   MSSTPGTHSLAFRVMRLCRPSLHVEPPLRVDPTDLFIGEDIFDDPIAASNLPPLISSDVT 60
           MS+TPGTHSLAFRVMRLCRPS HV+  L VDP+DL +GEDIFDDP+AAS LPPLI S +T
Sbjct: 1   MSTTPGTHSLAFRVMRLCRPSFHVDAQLLVDPSDLIVGEDIFDDPVAASRLPPLIDSHIT 60

Query: 61  T-NKSSDLTYRSRFLLHDSADSIGLSGLLVLPQAFGAIYLGETFCSYISINNSSTLEVRD 119
               +SDL+YR+RFL    +DS GL+GLLVLPQAFGAIYLGETFCSYISINNSS  EVRD
Sbjct: 61  KLTDTSDLSYRTRFLHQHPSDSFGLTGLLVLPQAFGAIYLGETFCSYISINNSSNFEVRD 120

Query: 120 VVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTALYSDGEG 179
           V+IKAEIQT++QRILLLDTSK+PVESIRAGGRYDFIVEHDVKELGAHTLVCTALYSDG+G
Sbjct: 121 VIIKAEIQTERQRILLLDTSKNPVESIRAGGRYDFIVEHDVKELGAHTLVCTALYSDGDG 180

Query: 180 ERKYLPQFFKFIVSNPLSVRTKVRVVKEITFLEACIENHTKSNLYMDQVEFEPSQNWSAT 239
           ERKYLPQFFKFIV+NPLSVRTKVRVVKE T+LEACIENHTK+NLYMDQVEFEP+Q+WSA 
Sbjct: 181 ERKYLPQFFKFIVANPLSVRTKVRVVKETTYLEACIENHTKTNLYMDQVEFEPAQHWSAK 240

Query: 240 MLKADGPHSDYNAQSREIFKPPVLIRSGGGIHNYLYQLKMLSHGSSSPVKVQGSNVLGKL 299
           ++K D   S+ ++ +REIFKPPVLIRSGGGIHNYLYQL++ +HG++       SNVLGKL
Sbjct: 241 IIKDDEKQSEKDSLTREIFKPPVLIRSGGGIHNYLYQLRLSAHGAAQ------SNVLGKL 294

Query: 300 QITWRTNLGEPGRLQTQQILGTTITSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQ 359
           QITWRTNLGEPGRLQTQQILGT IT KEIEL + +VP+V+ +DKPF + LKLTN TDKE 
Sbjct: 295 QITWRTNLGEPGRLQTQQILGTPITRKEIELCIAKVPAVINLDKPFSVHLKLTNHTDKEL 354

Query: 360 GPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRITGITVFD 419
           GPFE+WLSQ+ S EEK V INGL+ M L+ +EAFG+TDFHLNLIATKLGVQRITGITVFD
Sbjct: 355 GPFEVWLSQDGSVEEKAVTINGLQTMELSQLEAFGTTDFHLNLIATKLGVQRITGITVFD 414

Query: 420 KLEKITYDSLPDLE 433
           K EK TYD LPDLE
Sbjct: 415 KSEKKTYDPLPDLE 428

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225470348|ref|XP_002269604.1| PREDICTED: UPF0533 protein C5orf44 [Vitis vinifera] gi|296090651|emb|CBI41051.3| unnamed protein product [Vitis vinifera]

 Score =  692 bits (1785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/433 (77%), Positives = 381/433 (87%), Gaps = 1/433 (0%)

Query: 1   MSSTPGTHSLAFRVMRLCRPSLHVEPPLRVDPTDLFIGEDIFDDPIAASNLPPLISSDVT 60
           MSS   +HSLAFRVMRLCRPS HV+ PLR+DP DL  GEDIFDDP+AAS+LP L+ +   
Sbjct: 1   MSSGQTSHSLAFRVMRLCRPSFHVDNPLRLDPADLLAGEDIFDDPLAASDLPRLLHNHTL 60

Query: 61  TNKSSDLTYRSRFLLHDSADSIGLSGLLVLPQAFGAIYLGETFCSYISINNSSTLEVRDV 120
            +  SDLTYR+RFLL+D +D++GLSGLLVLPQ+FGAIYLGETFCSYISINNSS  EVRDV
Sbjct: 61  KSNDSDLTYRTRFLLNDPSDAMGLSGLLVLPQSFGAIYLGETFCSYISINNSSNFEVRDV 120

Query: 121 VIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTALYSDGEGE 180
           VIKAEIQT+KQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVC+ALY+DG+GE
Sbjct: 121 VIKAEIQTEKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCSALYNDGDGE 180

Query: 181 RKYLPQFFKFIVSNPLSVRTKVRVVKEITFLEACIENHTKSNLYMDQVEFEPSQNWSATM 240
           RKYLPQFFKF+V+NPLSV+TKVR+VK+ TFLEACIENHTKSNLYMDQVEFEPSQ+W+AT+
Sbjct: 181 RKYLPQFFKFVVANPLSVKTKVRIVKDNTFLEACIENHTKSNLYMDQVEFEPSQHWTATV 240

Query: 241 LKADGPHSDYNAQSREIFKPPVLIRSGGGIHNYLYQLKMLSHGSSSPVKVQGSNVLGKLQ 300
           LKA    SD ++ +REIFK P+LIRSGGGI NYLYQLK+ S GS+  +KV GSNVLGKLQ
Sbjct: 241 LKAGEGLSDNDSPTREIFKQPILIRSGGGIQNYLYQLKLSSQGSAQ-MKVDGSNVLGKLQ 299

Query: 301 ITWRTNLGEPGRLQTQQILGTTITSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQG 360
           ITWRTNLGEPGRLQTQQILG+ IT KEIEL V+EVPSV  +++PFL+ L LTNQTD+  G
Sbjct: 300 ITWRTNLGEPGRLQTQQILGSPITRKEIELQVMEVPSVTILERPFLVHLNLTNQTDRTMG 359

Query: 361 PFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRITGITVFDK 420
           PFE+WLSQ+DS EE+VVM+NGLR MAL  VEAF STDF LNLIATKLGVQ+ITGITVFD 
Sbjct: 360 PFEVWLSQSDSREEQVVMVNGLRAMALPQVEAFCSTDFRLNLIATKLGVQKITGITVFDI 419

Query: 421 LEKITYDSLPDLE 433
            EK TY+ LPDLE
Sbjct: 420 REKRTYEPLPDLE 432

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548745|ref|XP_003542760.1| PREDICTED: UPF0533 protein C5orf44 homolog [Glycine max]

 Score =  667 bits (1721), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/427 (75%), Positives = 370/427 (86%), Gaps = 4/427 (0%)

Query: 7   THSLAFRVMRLCRPSLHVEPPLRVDPTDLFIGEDIFDDPIAASNLPPLISSDVTTNKSSD 66
           +HSLAFRVMRLCRPS +VEPPLR+DPTDLF+GED+FDDP A    P   SS    +  SD
Sbjct: 12  SHSLAFRVMRLCRPSFNVEPPLRLDPTDLFVGEDLFDDPAAK---PHSFSSAAAHDDDSD 68

Query: 67  LTYRSRFLLHDSADSIGLSGLLVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEI 126
             YR+RFLL   +D++GLSGLLVLPQ+FGAIYLGETFCSYISINNSS  EVR+V+IKAEI
Sbjct: 69  PNYRNRFLLRHFSDAMGLSGLLVLPQSFGAIYLGETFCSYISINNSSNFEVREVLIKAEI 128

Query: 127 QTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTALYSDGEGERKYLPQ 186
           QT++QRILLLDTSKSPVE+IRAGGRYDFIVEHDVKELG HTLVCTALY+DG+GERKYLPQ
Sbjct: 129 QTERQRILLLDTSKSPVETIRAGGRYDFIVEHDVKELGPHTLVCTALYNDGDGERKYLPQ 188

Query: 187 FFKFIVSNPLSVRTKVRVVKEITFLEACIENHTKSNLYMDQVEFEPSQNWSATMLKADGP 246
           FFKFIV+NPLSVRTKVRV+KE TFLEACIENHTKSNL+MDQV+FEP+Q +SAT+LK DG 
Sbjct: 189 FFKFIVANPLSVRTKVRVIKETTFLEACIENHTKSNLFMDQVDFEPAQYYSATILKGDGH 248

Query: 247 HSDYNAQSREIFKPPVLIRSGGGIHNYLYQLKMLSHGSSSPVKVQGSNVLGKLQITWRTN 306
           HS+ ++ +REIFKPP+LIRSGGGI+NYLYQLK LS GS    KV+GSNVLGKLQITWRTN
Sbjct: 249 HSEKDSPTREIFKPPILIRSGGGIYNYLYQLKTLSDGSPQ-TKVEGSNVLGKLQITWRTN 307

Query: 307 LGEPGRLQTQQILGTTITSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWL 366
           LGEPGRLQTQQILGT  T KEIEL VVEVPS++ + KPF+LKL LTNQTD+E GPFE+ L
Sbjct: 308 LGEPGRLQTQQILGTPATKKEIELQVVEVPSIINLQKPFMLKLNLTNQTDRELGPFEVGL 367

Query: 367 SQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRITGITVFDKLEKITY 426
           SQN S  E+VVMINGL+ M L+ V+A GST+FHLNLIATK G+QRITGITVFD  E  +Y
Sbjct: 368 SQNVSYGERVVMINGLQSMVLSEVQALGSTNFHLNLIATKPGIQRITGITVFDTREMKSY 427

Query: 427 DSLPDLE 433
           + LPDLE
Sbjct: 428 EPLPDLE 434

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457717|ref|XP_004146594.1| PREDICTED: UPF0533 protein C5orf44-like [Cucumis sativus]

 Score =  663 bits (1710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/434 (72%), Positives = 380/434 (87%), Gaps = 1/434 (0%)

Query: 1   MSSTPGTHSLAFRVMRLCRPSLHVEPPLRVDPTDLFIGEDIFDDPIAASNLPPLISSDVT 60
           MS+  G+HSLAFRVMRLCRPS  V+PPLR+DP DL +GEDI DDP+AA+ LP L++  ++
Sbjct: 1   MSNAQGSHSLAFRVMRLCRPSFQVDPPLRLDPVDLLVGEDILDDPVAANQLPRLLAPQLS 60

Query: 61  TNKSSDLTYRSRFLLHDSADSIGLSGLLVLPQAFGAIYLGETFCSYISINNSSTLEVRDV 120
            +  SDL+Y SRFLLHDS+D++GL+GLLVLPQAFGAIYLGETFCSYIS+NNSS  EVRDV
Sbjct: 61  DDSDSDLSYSSRFLLHDSSDAMGLNGLLVLPQAFGAIYLGETFCSYISVNNSSNFEVRDV 120

Query: 121 VIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTALYSDGEGE 180
           +IKAEIQT++QRILLLD+SKSPVE+IRAGGRYDFIVEHDVKELGAHTLVCTALY+DG+GE
Sbjct: 121 IIKAEIQTERQRILLLDSSKSPVETIRAGGRYDFIVEHDVKELGAHTLVCTALYNDGDGE 180

Query: 181 RKYLPQFFKFIVSNPLSVRTKVRVVKEITFLEACIENHTKSNLYMDQVEFEPSQNWSATM 240
           RKYLPQFFKF+V+NPLSVRTKVRVVK+ TFLEACIENHTKSNL+MDQV+FEPS NW+A +
Sbjct: 181 RKYLPQFFKFMVANPLSVRTKVRVVKDSTFLEACIENHTKSNLFMDQVDFEPSPNWNAVI 240

Query: 241 LKADGPHSDYNAQSREIFKPPVLIRSGGGIHNYLYQLKMLSHGSSSPVKVQGSNVLGKLQ 300
           + AD  HS++ + +RE+FKPPVL+RSGGGIHN+LYQLK  ++G SSP+KV+GSN+LGKLQ
Sbjct: 241 INADEHHSEHKSTTREVFKPPVLVRSGGGIHNFLYQLKCSTNGPSSPLKVEGSNILGKLQ 300

Query: 301 ITWRTNLGEPGRLQTQQILGTTITSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQG 360
           ITWRTN+GEPGRLQTQQILG+ IT KE+ELNVVE+P V+ +++PF L ++LT Q ++E G
Sbjct: 301 ITWRTNMGEPGRLQTQQILGSPITRKELELNVVEMPDVIRLERPFTLHMRLTTQIERELG 360

Query: 361 PFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRITGITVFDK 420
           PFE+W+S N SDE+KVVM+NGL+ + +  VE +GSTDFHLNLIATK GVQRI GI VFD 
Sbjct: 361 PFEVWMSLNSSDEDKVVMVNGLQKVVIPRVEPYGSTDFHLNLIATKPGVQRIAGIKVFDT 420

Query: 421 LEKITYDS-LPDLE 433
            EK  Y+   PDLE
Sbjct: 421 REKKAYEHPSPDLE 434

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224079249|ref|XP_002305809.1| predicted protein [Populus trichocarpa] gi|222848773|gb|EEE86320.1| predicted protein [Populus trichocarpa]

 Score =  656 bits (1692), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/437 (73%), Positives = 371/437 (84%), Gaps = 11/437 (2%)

Query: 1   MSSTPGTHSLAFRVMRLCRPSLHVEPPLRVDPTDLFIGEDIFDDPIAASNLPPLISSDVT 60
           MS+ P T SLAFRVMRLCRPS HV+ PL +DP+DL +GEDIFDDP+AA++LPPLI + +T
Sbjct: 1   MSTPPATQSLAFRVMRLCRPSFHVDTPLLLDPSDLILGEDIFDDPLAATHLPPLIDTHLT 60

Query: 61  TN-KSSDLTYRSRFLLHDSADSIGLSGLLVLPQAFGAIYLGETFCSYISINNSSTLEVRD 119
               SSDL+YRSRFLL + +DS GLSGLLVLPQ+FGAIYLGETFCSY+SINNSS  EVRD
Sbjct: 61  NPIDSSDLSYRSRFLLQNPSDSFGLSGLLVLPQSFGAIYLGETFCSYVSINNSSNFEVRD 120

Query: 120 VVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTALYSDGEG 179
           +VIKAE+QT++QRILLLDTSK+PVESIRA GRYDFIVEHDVKELGAHTLVCTALY+DG+G
Sbjct: 121 IVIKAEMQTERQRILLLDTSKTPVESIRASGRYDFIVEHDVKELGAHTLVCTALYTDGDG 180

Query: 180 ERKYLPQFFKFIVSNPLSVRTKV---RVVKEITFLEACIENHTKSNLYMDQVEFEPSQNW 236
           ERKYLPQFFKFIV+NPLSVRTKV    V +E T+LEACIENHTK+NLYMDQVEFEP+ NW
Sbjct: 181 ERKYLPQFFKFIVANPLSVRTKVLLLLVSQETTYLEACIENHTKTNLYMDQVEFEPAPNW 240

Query: 237 SATMLKADGPHSDYNAQSREIFKPPVLIRSGGGIHNYLYQLKMLSHGSSSPVKVQGSNVL 296
           SA +LKAD   S  N+ SR     P L++SGGGI NYLYQL + SHGS+       SNVL
Sbjct: 241 SAKILKADEHKSKDNSPSR-CGNIPFLVKSGGGIRNYLYQLSLSSHGSAE------SNVL 293

Query: 297 GKLQITWRTNLGEPGRLQTQQILGTTITSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTD 356
           GKLQITWRTNLGEPGRLQTQQILGT IT KEIEL+V EVPS + +D+PFL+ L LTNQTD
Sbjct: 294 GKLQITWRTNLGEPGRLQTQQILGTPITPKEIELHVAEVPSAINLDRPFLVHLNLTNQTD 353

Query: 357 KEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRITGIT 416
           +E GPFE+WLSQ+D+ +EK VMINGL+ M L+ +EAFGSTDF+LNLIATKLGVQ+ITGIT
Sbjct: 354 RELGPFEVWLSQDDTLDEKTVMINGLQTMELSQLEAFGSTDFYLNLIATKLGVQKITGIT 413

Query: 417 VFDKLEKITYDSLPDLE 433
           VFDK EK TY  LPDLE
Sbjct: 414 VFDKSEKKTYAPLPDLE 430

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521339|ref|XP_003529314.1| PREDICTED: UPF0533 protein C5orf44-like [Glycine max]

 Score =  645 bits (1664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/427 (74%), Positives = 364/427 (85%), Gaps = 8/427 (1%)

Query: 7   THSLAFRVMRLCRPSLHVEPPLRVDPTDLFIGEDIFDDPIAASNLPPLISSDVTTNKSSD 66
           +HSLAFRVMRLCRPS +VEPPLR+DP DLF GED+FDDP A    PP  SS   ++ +  
Sbjct: 11  SHSLAFRVMRLCRPSFNVEPPLRLDPADLFAGEDLFDDPAAN---PPSFSSSDDSDSN-- 65

Query: 67  LTYRSRFLLHDSADSIGLSGLLVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEI 126
             YR+RFLL   +D++GLSGLLVLPQ+FGAIYLGETFCSYISINNSS  EVRDV+IKAEI
Sbjct: 66  --YRNRFLLRHFSDAMGLSGLLVLPQSFGAIYLGETFCSYISINNSSNFEVRDVIIKAEI 123

Query: 127 QTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTALYSDGEGERKYLPQ 186
           QT++ RILLLDTSKSPVE+IRAGGRYDFIVEHDVKELG HTLVCTALY+DG+GERKYLPQ
Sbjct: 124 QTERLRILLLDTSKSPVETIRAGGRYDFIVEHDVKELGPHTLVCTALYNDGDGERKYLPQ 183

Query: 187 FFKFIVSNPLSVRTKVRVVKEITFLEACIENHTKSNLYMDQVEFEPSQNWSATMLKADGP 246
           FFKFIV+NPLSVRTKVRV+KE TFLEACIENHTKSNL+MDQV+FEP+Q +SA++LK DG 
Sbjct: 184 FFKFIVANPLSVRTKVRVIKETTFLEACIENHTKSNLFMDQVDFEPAQYYSASILKGDGH 243

Query: 247 HSDYNAQSREIFKPPVLIRSGGGIHNYLYQLKMLSHGSSSPVKVQGSNVLGKLQITWRTN 306
           HS+ ++ +RE FKPP+LIRSGGGI+NYLYQLK  S G     KV+GSNVLGKLQITWRTN
Sbjct: 244 HSEKDSPTRETFKPPILIRSGGGIYNYLYQLKTSSDGLPQ-TKVEGSNVLGKLQITWRTN 302

Query: 307 LGEPGRLQTQQILGTTITSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWL 366
           LGEPGRLQTQQILGTT T KEIEL VVEVPS++ +  PF+LKL LTNQTD+E GPFE+ L
Sbjct: 303 LGEPGRLQTQQILGTTATKKEIELQVVEVPSIINLQNPFMLKLNLTNQTDRELGPFEVSL 362

Query: 367 SQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRITGITVFDKLEKITY 426
           SQN S  E+ VMINGL+ M L+ V+A GST+FHLNLIATK G+QRITGITVFD  E  +Y
Sbjct: 363 SQNVSYGERAVMINGLQSMVLSEVQALGSTNFHLNLIATKPGIQRITGITVFDTREMKSY 422

Query: 427 DSLPDLE 433
           + LPDLE
Sbjct: 423 EPLPDLE 429

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388496064|gb|AFK36098.1| unknown [Medicago truncatula]

 Score =  635 bits (1639), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 309/426 (72%), Positives = 361/426 (84%), Gaps = 8/426 (1%)

Query: 8   HSLAFRVMRLCRPSLHVEPPLRVDPTDLFIGEDIFDDPIAASNLPPLISSDVTTNKSSDL 67
           HS+AFRVMRLCRPS +V+PPLR+DP DLF+GED FDDP A S      SSD+     SD 
Sbjct: 14  HSVAFRVMRLCRPSFNVDPPLRIDPDDLFVGEDHFDDPSAPS------SSDLIA-PDSDP 66

Query: 68  TYRSRFLLHDSADSIGLSGLLVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQ 127
            YR+RFLL   +DS+GLSGLLVLPQ+FGAIYLGETFCSYISINNSS  EVR+V+IKAEIQ
Sbjct: 67  NYRNRFLLQHFSDSMGLSGLLVLPQSFGAIYLGETFCSYISINNSSNFEVREVIIKAEIQ 126

Query: 128 TDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTALYSDGEGERKYLPQF 187
           T++QRILLLDTSKSPVE+IRAGGRYDFIVEHDVKELG HTLVCTALY+DG+GERKYLPQF
Sbjct: 127 TERQRILLLDTSKSPVETIRAGGRYDFIVEHDVKELGPHTLVCTALYNDGDGERKYLPQF 186

Query: 188 FKFIVSNPLSVRTKVRVVKEITFLEACIENHTKSNLYMDQVEFEPSQNWSATMLKADGPH 247
           FKFIV+NPLSVRTKVRV+KE TFLEACIENHTKSNL+MDQV+FEP+Q++SAT+L+ DGPH
Sbjct: 187 FKFIVANPLSVRTKVRVIKETTFLEACIENHTKSNLFMDQVDFEPAQHYSATILRGDGPH 246

Query: 248 SDYNAQSREIFKPPVLIRSGGGIHNYLYQLKMLSHGSSSPVKVQGSNVLGKLQITWRTNL 307
           ++ +  +RE FKPP+LIRSGGGI+NYLYQLK  S   S+  KV+G+NVLGKLQITWRTNL
Sbjct: 247 TEKDNTARETFKPPILIRSGGGIYNYLYQLKS-SLDDSAQTKVEGNNVLGKLQITWRTNL 305

Query: 308 GEPGRLQTQQILGTTITSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLS 367
           GEPGRLQTQQILGT  T KEIEL VVEVPS++ + +PF LKL LTN T++E GPF++ +S
Sbjct: 306 GEPGRLQTQQILGTPTTKKEIELQVVEVPSIINLQRPFTLKLNLTNLTERELGPFKVSVS 365

Query: 368 QNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRITGITVFDKLEKITYD 427
           QN S  E  VMINGL+ M L+ +EA GST+ HLNLIATK G+Q+ITGITVFD     +Y+
Sbjct: 366 QNGSSGETAVMINGLQSMVLSQIEALGSTNIHLNLIATKPGIQKITGITVFDTRGMKSYE 425

Query: 428 SLPDLE 433
            LPDLE
Sbjct: 426 PLPDLE 431

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358346667|ref|XP_003637387.1| hypothetical protein MTR_084s0010 [Medicago truncatula] gi|355503322|gb|AES84525.1| hypothetical protein MTR_084s0010 [Medicago truncatula]

 Score =  627 bits (1617), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 309/435 (71%), Positives = 361/435 (82%), Gaps = 17/435 (3%)

Query: 8   HSLAFRVMRLCRPSLHVEPPLRVDPTDLFIGEDIFDDPIAASNLPPLISSDVTTNKSSDL 67
           HS+AFRVMRLCRPS +V+PPLR+DP DLF+GED FDDP A S      SSD+     SD 
Sbjct: 14  HSVAFRVMRLCRPSFNVDPPLRIDPDDLFVGEDHFDDPSAPS------SSDLIA-PDSDP 66

Query: 68  TYRSRFLLHDSADSIGLSGLLVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQ 127
            YR+RFLL   +DS+GLSGLLVLPQ+FGAIYLGETFCSYISINNSS  EVR+V+IKAEIQ
Sbjct: 67  NYRNRFLLQHFSDSMGLSGLLVLPQSFGAIYLGETFCSYISINNSSNFEVREVIIKAEIQ 126

Query: 128 TDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTALYSDGEGERKYLPQF 187
           T++QRILLLDTSKSPVE+IRAGGRYDFIVEHDVKELG HTLVCTALY+DG+GERKYLPQF
Sbjct: 127 TERQRILLLDTSKSPVETIRAGGRYDFIVEHDVKELGPHTLVCTALYNDGDGERKYLPQF 186

Query: 188 FKFIVSNPLSVRTKVRVVKEITFLEACIENHTKSNLYMDQVEFEPSQNWSATMLKADGPH 247
           FKFIV+NPLSVRTKVRV+KE TFLEACIENHTKSNL+MDQV+FEP+Q++SAT+L+ DGPH
Sbjct: 187 FKFIVANPLSVRTKVRVIKETTFLEACIENHTKSNLFMDQVDFEPAQHYSATILRGDGPH 246

Query: 248 SDYNAQSREIFKPPVLIRSGGGIHNYLYQLKMLSHGSSSPVKVQGSNVLGKLQITWRTNL 307
           ++ +  +RE FKPP+LIRSGGGI+NYLYQLK  S   S+  KV+G+NVLGKLQITWRTNL
Sbjct: 247 TEKDNTARETFKPPILIRSGGGIYNYLYQLKS-SLDDSAQTKVEGNNVLGKLQITWRTNL 305

Query: 308 GEPGRLQTQQILGTTITSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLS 367
           GEPGRLQTQQILGT  T KEIEL VVEVPS++ + +PF LKL LTN T++E GPF++ +S
Sbjct: 306 GEPGRLQTQQILGTPTTKKEIELQVVEVPSIINLQRPFTLKLNLTNLTERELGPFKVSVS 365

Query: 368 QNDSDEEKVVMINGLRIM---------ALAPVEAFGSTDFHLNLIATKLGVQRITGITVF 418
           QN S  E  VMINGL+ M          L+ +EA GST+ HLNLIATK G+Q+ITGITVF
Sbjct: 366 QNGSSGETAVMINGLQSMVMHSLWIISVLSQIEALGSTNIHLNLIATKPGIQKITGITVF 425

Query: 419 DKLEKITYDSLPDLE 433
           D     +Y+ LPDLE
Sbjct: 426 DTRGMKSYEPLPDLE 440

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297824907|ref|XP_002880336.1| hypothetical protein ARALYDRAFT_483987 [Arabidopsis lyrata subsp. lyrata] gi|297326175|gb|EFH56595.1| hypothetical protein ARALYDRAFT_483987 [Arabidopsis lyrata subsp. lyrata]

 Score =  599 bits (1544), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 296/435 (68%), Positives = 350/435 (80%), Gaps = 5/435 (1%)

Query: 1   MSSTPGTHSLAFRVMRLCRPSLHVEPPLRVDPTDLFIGEDIFDDPIAASNLPPLISSDVT 60
           MS+T G HSLAFRVMRLC+PS HV+PPLR+DP DL  GED  DDP +AS     +SS   
Sbjct: 1   MSATHGPHSLAFRVMRLCKPSFHVDPPLRIDPFDLLAGEDFSDDPSSASLFRRHVSSADA 60

Query: 61  TNKSSDLTYRSRFLLHDSADSIGLSGLLVLPQAFGAIYLGETFCSYISINNSSTLEVRDV 120
            +  SDL+YR+RFLL+   D IGLSGLL+LPQ+FGAIYLGETFCSYIS+NNSST EVRDV
Sbjct: 61  VD--SDLSYRNRFLLNHPTDPIGLSGLLLLPQSFGAIYLGETFCSYISVNNSSTSEVRDV 118

Query: 121 VIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTALYSDGEGE 180
            IKAEIQT++QRILLLDTSKSPVESIR GGRYDFIVEHDVKELGAHTLVC+ALY+D +GE
Sbjct: 119 TIKAEIQTERQRILLLDTSKSPVESIRTGGRYDFIVEHDVKELGAHTLVCSALYNDADGE 178

Query: 181 RKYLPQFFKFIVSNPLSVRTKVRVVKEITFLEACIENHTKSNLYMDQVEFEPSQNWSATM 240
           RKYLPQFFKF+V+NPLSVRTKVRVVKE TFLEACIENHTK+NL+MDQV+FEP++ WSA  
Sbjct: 179 RKYLPQFFKFVVANPLSVRTKVRVVKETTFLEACIENHTKANLFMDQVDFEPAKQWSAVR 238

Query: 241 LKADGPHSD--YNAQSREIFKPPVLIRSGGGIHNYLYQLKMLSHGSSSPVKVQGSNVLGK 298
           L+ +    D   +  S  I KPPV+IRSGGGIHNYLY+L   S   S   K QGSN+LGK
Sbjct: 239 LQNEDSTEDPPTSGLSGLIPKPPVIIRSGGGIHNYLYKLNP-SADVSGQTKFQGSNILGK 297

Query: 299 LQITWRTNLGEPGRLQTQQILGTTITSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKE 358
            QITWRTNLGEPGRLQTQQILG  ++ KEI + V EVP+V+ +++PF   L LTNQTD++
Sbjct: 298 FQITWRTNLGEPGRLQTQQILGAPVSRKEINMRVAEVPAVIHLNRPFPAYLNLTNQTDRQ 357

Query: 359 QGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRITGITVF 418
            GPFE+ LSQ++S  EK V INGL+ + L  +EAFGS DF LNLIA+KLGVQ+I+GIT  
Sbjct: 358 LGPFEVSLSQDESQMEKPVGINGLQTLMLPRIEAFGSNDFQLNLIASKLGVQKISGITAL 417

Query: 419 DKLEKITYDSLPDLE 433
           D  EK TY+ +P++E
Sbjct: 418 DTREKKTYELVPEME 432

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18407493|ref|NP_566117.1| uncharacterized protein [Arabidopsis thaliana] gi|16226796|gb|AAL16264.1|AF428334_1 At2g47960/T9J23.10 [Arabidopsis thaliana] gi|18377797|gb|AAL67048.1| unknown protein [Arabidopsis thaliana] gi|20197311|gb|AAC63650.2| expressed protein [Arabidopsis thaliana] gi|20197565|gb|AAM15133.1| expressed protein [Arabidopsis thaliana] gi|21281259|gb|AAM45021.1| unknown protein [Arabidopsis thaliana] gi|330255823|gb|AEC10917.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  597 bits (1540), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 295/434 (67%), Positives = 348/434 (80%), Gaps = 5/434 (1%)

Query: 2   SSTPGTHSLAFRVMRLCRPSLHVEPPLRVDPTDLFIGEDIFDDPIAASNLPPLISSDVTT 61
           + T G HSLAFRVMRLC+PS HV+PPLR+DP DL  GED  DDP +AS     +SS    
Sbjct: 6   TQTHGPHSLAFRVMRLCKPSFHVDPPLRIDPFDLLAGEDFSDDPSSASLFRRHVSSADAV 65

Query: 62  NKSSDLTYRSRFLLHDSADSIGLSGLLVLPQAFGAIYLGETFCSYISINNSSTLEVRDVV 121
           +  SDL+YR+RFLL+   D IGLSGLL+LPQ+FGAIYLGETFCSYIS+NNSST EVRDV 
Sbjct: 66  D--SDLSYRNRFLLNHPTDPIGLSGLLLLPQSFGAIYLGETFCSYISVNNSSTSEVRDVT 123

Query: 122 IKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTALYSDGEGER 181
           IKAEIQT++QRILLLDTSKSPVESIR GGRYDFIVEHDVKELGAHTLVC+ALY+D +GER
Sbjct: 124 IKAEIQTERQRILLLDTSKSPVESIRTGGRYDFIVEHDVKELGAHTLVCSALYNDADGER 183

Query: 182 KYLPQFFKFIVSNPLSVRTKVRVVKEITFLEACIENHTKSNLYMDQVEFEPSQNWSATML 241
           KYLPQFFKF+V+NPLSVRTKVRVVKE TFLEACIENHTK+NL+MDQV+FEP++ WSA  L
Sbjct: 184 KYLPQFFKFVVANPLSVRTKVRVVKETTFLEACIENHTKANLFMDQVDFEPAKQWSAVRL 243

Query: 242 KADGPHSD--YNAQSREIFKPPVLIRSGGGIHNYLYQLKMLSHGSSSPVKVQGSNVLGKL 299
           + +    D   +  S  I KPPV+IRSGGGIHNYLY+L   S   S   K QGSN+LGK 
Sbjct: 244 QNEDSTEDPPTSGLSGLIPKPPVIIRSGGGIHNYLYKLNP-SADVSGQTKFQGSNILGKF 302

Query: 300 QITWRTNLGEPGRLQTQQILGTTITSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQ 359
           QITWRTNLGEPGRLQTQQILG  ++ KEI + VVEVP+V+ +++PF   L LTNQTD++ 
Sbjct: 303 QITWRTNLGEPGRLQTQQILGAPVSRKEINMRVVEVPAVIHLNRPFRAYLNLTNQTDRQL 362

Query: 360 GPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRITGITVFD 419
           GPFE+ LSQ+++  EK V INGL+ + L  +EAFGS DF LNLIA+KLGVQ+I GIT  D
Sbjct: 363 GPFEVSLSQDETQLEKPVGINGLQTLMLPRIEAFGSNDFQLNLIASKLGVQKIAGITALD 422

Query: 420 KLEKITYDSLPDLE 433
             EK TY+ +PD+E
Sbjct: 423 TREKKTYELVPDME 436

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	433
TAIR|locus:2043433	442	AT2G47960 "AT2G47960" [Arabido	0.990	0.970	0.661	9e-148
ZFIN|ZDB-GENE-030131-9775	412	trappc13 "trafficking protein	0.775	0.815	0.338	1.1e-52
MGI|MGI:1914225	417	Trappc13 "trafficking protein	0.778	0.808	0.325	1.4e-48
DICTYBASE|DDB_G0269062	511	DDB_G0269062 "DUF974 family pr	0.542	0.459	0.348	1.2e-47
FB|FBgn0032204	438	CG4953 [Drosophila melanogaste	0.785	0.776	0.316	2.3e-44
UNIPROTKB|G4NC96	339	MGG_01105 "Uncharacterized pro	0.219	0.280	0.324	0.00048

TAIR|locus:2043433 AT2G47960 "AT2G47960" [Arabidopsis thaliana (taxid:3702)]

 Score = 1443 (513.0 bits), Expect = 9.0e-148, P = 9.0e-148
 Identities = 287/434 (66%), Positives = 338/434 (77%)

Query:     2 SSTPGTHSLAFRVMRLCRPSLHVEPPLRVDPTDLFIGEDIFDDPIAASNLPPLISSDVTT 61
             + T G HSLAFRVMRLC+PS HV+PPLR+DP DL  GED  DDP +AS     +SS    
Sbjct:     6 TQTHGPHSLAFRVMRLCKPSFHVDPPLRIDPFDLLAGEDFSDDPSSASLFRRHVSSADAV 65

Query:    62 NKSSDLTYRSRFLLHDSADSIGLSGLLVLPQAFGAIYLGETFCSYISINNSSTLEVRDVV 121
             +  SDL+YR+RFLL+   D IGLSGLL+LPQ+FGAIYLGETFCSYIS+NNSST EVRDV 
Sbjct:    66 D--SDLSYRNRFLLNHPTDPIGLSGLLLLPQSFGAIYLGETFCSYISVNNSSTSEVRDVT 123

Query:   122 IKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTALYSDGEGER 181
             IKAEIQT++QRILLLDTSKSPVESIR GGRYDFIVEHDVKELGAHTLVC+ALY+D +GER
Sbjct:   124 IKAEIQTERQRILLLDTSKSPVESIRTGGRYDFIVEHDVKELGAHTLVCSALYNDADGER 183

Query:   182 KYLPQFFKFIVSNPLSVRTKVRVVKEITFLEACIENHTKSNLYMDQVEFEPSQNWSATML 241
             KYLPQFFKF+V+NPLSVRTKVRVVKE TFLEACIENHTK+NL+MDQV+FEP++ WSA  L
Sbjct:   184 KYLPQFFKFVVANPLSVRTKVRVVKETTFLEACIENHTKANLFMDQVDFEPAKQWSAVRL 243

Query:   242 KADGPHSD--YNAQSREIFKPPVLIRSGGGIHNYLYQLKMLSHGSSSPVKVQGSNVLGKL 299
             + +    D   +  S  I KPPV+IRSGGGIHNYLY+L   S   S   K QGSN+LGK 
Sbjct:   244 QNEDSTEDPPTSGLSGLIPKPPVIIRSGGGIHNYLYKLNP-SADVSGQTKFQGSNILGKF 302

Query:   300 QITWRTNLGEPGRXXXXXXXXXXXXSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQ 359
             QITWRTNLGEPGR             KEI + VVEVP+V+ +++PF   L LTNQTD++ 
Sbjct:   303 QITWRTNLGEPGRLQTQQILGAPVSRKEINMRVVEVPAVIHLNRPFRAYLNLTNQTDRQL 362

Query:   360 GPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRITGITVFD 419
             GPFE+ LSQ+++  EK V INGL+ + L  +EAFGS DF LNLIA+KLGVQ+I GIT  D
Sbjct:   363 GPFEVSLSQDETQLEKPVGINGLQTLMLPRIEAFGSNDFQLNLIASKLGVQKIAGITALD 422

Query:   420 KLEKITYDSLPDLE 433
               EK TY+ +PD+E
Sbjct:   423 TREKKTYELVPDME 436

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

ZFIN|ZDB-GENE-030131-9775 trappc13 "trafficking protein particle complex 13" [Danio rerio (taxid:7955)]

 Score = 491 (177.9 bits), Expect = 1.1e-52, Sum P(2) = 1.1e-52
 Identities = 119/352 (33%), Positives = 190/352 (53%)

Query:    79 ADSIGLSGLLVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDT 138
             A+++ L  +L LPQ FG I+LGETF SYIS++N S+  V+D+++KA++QT  QR L L  
Sbjct:    56 AETLILGEMLTLPQNFGNIFLGETFSSYISVHNDSSQVVKDILVKADLQTSSQR-LNLSA 114

Query:   139 SKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTALYSDGEGERKYLPQFFKFIVSNPLSV 198
             S S V  ++     D ++ H+VKE+G H LVC   Y+   GE+ Y  +FFKF V  PL V
Sbjct:   115 SNSAVSELKPECCIDDVIHHEVKEIGTHILVCAVSYTTQTGEKLYFRKFFKFQVLKPLDV 174

Query:   199 RTKV-RVVKEITFLEACIENHTKSNLYMDQVEFEPSQNWSATMLK--ADGPHSDYNAQSR 255
             +TK      +  FLEA I+N T S ++M++V  EPS  ++ T L   A G  S  +   +
Sbjct:   175 KTKFYNAETDEVFLEAQIQNITTSPMFMEKVSLEPSMMYNVTELNNVASGDESSESTFGK 234

Query:   256 EIFKPPVLIRSGGGIHNYLYQLKMLSHGSSSPVKVQGSNVLGKLQITWRTNLGEPGRXXX 315
               +  P+  R       YLY LK     +     ++G  V+GKL I W+TNLGE GR   
Sbjct:   235 MSYLQPLDTRQ------YLYCLKPKPEFAEKAGVIKGVTVIGKLDIVWKTNLGERGRLQT 288

Query:   316 XXXXXXXXXSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEK 375
                        ++ L++  +P  V +++PF +  K+TN +++     ++ L   ++    
Sbjct:   289 SQLQRMAPGYGDVRLSLEFIPDTVDLEEPFDITCKITNCSERTM---DLLLEMCNTRSVH 345

Query:   376 VVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRITGITVFDKLEKITYD 427
                ++G ++  L+P     S    L L+++  G+Q I+G+ + D   K TY+
Sbjct:   346 WCGVSGRQLGKLSPS---ASLSIPLKLLSSVQGLQSISGLRLTDTFLKRTYE 394

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

MGI|MGI:1914225 Trappc13 "trafficking protein particle complex 13" [Mus musculus (taxid:10090)]

 Score = 457 (165.9 bits), Expect = 1.4e-48, Sum P(2) = 1.4e-48
 Identities = 117/360 (32%), Positives = 189/360 (52%)

Query:    77 DSADSIGLSGLLVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLL 136
             + A+ + L  +L LPQ FG I+LGETF SYIS++N S   V+D+++KA++QT  QR L L
Sbjct:    54 NGAEILMLGEMLTLPQNFGNIFLGETFSSYISVHNDSNQVVKDILVKADLQTSSQR-LNL 112

Query:   137 DTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTALYSDGEGERKYLPQFFKFIVSNPL 196
               S + V  ++     D ++ H+VKE+G H LVC   Y+   GE+ Y  +FFKF V  PL
Sbjct:   113 SASNAAVAELKPDCCIDDVIHHEVKEIGTHILVCAVSYTTQGGEKMYFRKFFKFQVLKPL 172

Query:   197 SVRTK-------VRVVKEITFLEACIENHTKSNLYMDQVEFEPSQNWSATMLKADGPHSD 249
              V+TK       +  V +  FLEA I+N T S ++M++V  EPS  ++ T L +     +
Sbjct:   173 DVKTKFYNAESDLSSVTDEVFLEAQIQNITTSPMFMEKVSLEPSIMYNVTELNSVTQAGE 232

Query:   250 YNAQ--SREIFKPPVLIRSGGGIHNYLYQLKMLSHGSSSPVKVQGSNVLGKLQITWRTNL 307
               +   SR   +P            YLY LK     +     ++G  V+GKL I W+TNL
Sbjct:   233 CISTFGSRGYLQPM-------DTRQYLYCLKPKKEFAEKAGIIKGVTVIGKLDIVWKTNL 285

Query:   308 GEPGRXXXXXXXXXXXXSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLS 367
             GE GR              ++ L++  +P  V +++PF +  K+TN +++     ++ L 
Sbjct:   286 GERGRLQTSQLQRMAPGYGDVRLSLEAIPDTVNLEEPFHITCKITNCSERMM---DLVLE 342

Query:   368 QNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRITGITVFDKLEKITYD 427
               +++      I+G ++  L P     S    L L+++  G+Q ++G+ + D   K TY+
Sbjct:   343 MCNTNSIHWCGISGRQLGKLHPSS---SLCLALTLLSSVQGLQSVSGLRLTDTFLKRTYE 399

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0269062 DDB_G0269062 "DUF974 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 376 (137.4 bits), Expect = 1.2e-47, Sum P(2) = 1.2e-47
 Identities = 86/247 (34%), Positives = 141/247 (57%)

Query:     8 HSLAFRVMRLCRPSLHVEPPLRVDPTDLFIGEDIFDDPIAASNLPPLISSDVTTNKSSDL 67
             H L  +VMRL +P++    P+  +  DL    +     I +++L       V ++ S+D 
Sbjct:     5 HLLNLKVMRLSKPNIPTINPILCEKQDL--PYETMSTSIDSTSLS---MGSVNSSGSND- 58

Query:    68 TYRSRFLLHDSADSIGLSGLLV---LPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKA 124
                +  L+ ++ + I + GL V   L    G IYLGE FC YIS+NN S  +VR+V +K 
Sbjct:    59 ---NNQLIGNNGNPINMEGLGVTSMLQLQSGVIYLGEMFCCYISLNNHSPYQVRNVFLKV 115

Query:   125 EIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTALYSDGEGERKYL 184
             E+QT   RI LLD+ +  V +   G   DF+V+ +VKE G + LVC   Y+  EGE+K  
Sbjct:   116 ELQTTSSRIPLLDSEQQSVPTFNPGFSSDFVVQREVKESGVNILVCAVNYTTPEGEQKKF 175

Query:   185 PQFFKFIVSNPLSVRTKVRVVKEITFLEACIENHTKSNLYMDQVEFEPSQNWSATMLKAD 244
              ++FKF V NPL ++T++  +  + FLEAC+EN T+ +L+++ + FEP +++++  +  +
Sbjct:   176 RKYFKFQVLNPLVLKTRIHNLPNVVFLEACLENATQGSLFIESILFEPIEHFNSKDISFE 235

Query:   245 GPHSDYN 251
                 D N
Sbjct:   236 NSLDDNN 242

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

FB|FBgn0032204 CG4953 [Drosophila melanogaster (taxid:7227)]

 Score = 415 (151.1 bits), Expect = 2.3e-44, Sum P(2) = 2.3e-44
 Identities = 114/360 (31%), Positives = 193/360 (53%)

Query:    79 ADSIGLSGLLVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLL-- 136
             A+++    +L+LPQ+FG+IYLGETF SYI ++N++   V  V +KA++Q++  RI L   
Sbjct:    55 AETLAAGQVLLLPQSFGSIYLGETFASYICVHNTTPNPVECVTVKADLQSNTSRINLSMH 114

Query:   137 DTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTALYSDGEGERKYLPQFFKFIVSNPL 196
             + +KSPV  +  GG  D ++ ++VKE+G H LVC   YS   G  + L +FFKF V  PL
Sbjct:   115 ENAKSPVV-LPPGGTIDDVIRYEVKEIGTHILVCEVNYSTPAGYAQSLRKFFKFQVLKPL 173

Query:   197 SVRTKV--RVVKEITFLEACIENHTKSNLYMDQVEFEPSQNWSATMLKADGPHSDYNAQS 254
              V+TK     + EI +LEA I+N T S   +++VE + S+++S T L    P    N +S
Sbjct:   174 DVKTKFYNAEIDEI-YLEAQIQNVTTSPFCLEKVELDGSEDYSVTPLNTL-P----NGES 227

Query:   255 REIFKPPVLIRSGGGIHNYLYQLKMLSHGSSSPVKVQGSNVLGKLQITWRTNLGEPGRXX 314
               +F    +++       +LY +K     + +   ++  N +GKL I WR+NLGE GR  
Sbjct:   228 --VFTVKHMLQPNNSCQ-FLYCIKPKGDIAKNVDTLRQFNNVGKLDIVWRSNLGEKGRLQ 284

Query:   315 XXXXXXXXXXSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEE 374
                        K + L V++  + + I   F    ++TN T +      + L+   S + 
Sbjct:   285 TSQLQRLPFECKTLRLEVLDAKNTIKIGTIFTFNCRVTN-TSEHPMKLNVRLAAKFSPDS 343

Query:   375 KVVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRITGITVFDKL--EKITYDSLPDL 432
             +     G     L  +++  S +F L++  +KLG+ +IT + + + L  E+ T +++ D+
Sbjct:   344 QYT---GCADFMLNLLQSGESAEFPLSVCPSKLGLVKITPLVLTNTLQNEQFTIENVVDV 400

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|G4NC96 MGG_01105 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 101 (40.6 bits), Expect = 0.00048, Sum P(2) = 0.00048
 Identities = 36/111 (32%), Positives = 52/111 (46%)

Query:    80 DSIGLSGLLVLPQAFGAIYLGETFCSYISINN-----SSTLEVRDVVIKAEIQTDKQR-- 132
             D   LS +L LP +FG+ Y+GETF   +  N+     ++  +VRDV I+AE++T      
Sbjct:    65 DPFILSPILNLPPSFGSAYVGETFSCTLCANHDVPDGAAARQVRDVRIEAEMKTPGSAAG 124

Query:   133 -ILLLDTSKSPVES--------IRAGGRYDFIVEHDVKELGAHTLVCTALY 174
              +  LD   +            +R G     IV  D+KE G H L  T  Y
Sbjct:   125 VVTKLDLGPNGGGGGEGDGGVDLREGETLQRIVRFDLKEEGNHVLAVTVSY 175

GO:0005575 "cellular_component" evidence=ND

GO:0043581 "mycelium development" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0VFT9	CE044_XENTR	No assigned EC number	0.3231	0.8799	0.9247	yes	no
Q95TN1	U533_DROME	No assigned EC number	0.3057	0.8960	0.8858	yes	no
Q5RCG0	CE044_PONAB	No assigned EC number	0.3210	0.8706	0.9040	yes	no
Q3TIR1	CE044_MOUSE	No assigned EC number	0.3193	0.8799	0.9136	yes	no
Q5M887	CE044_RAT	No assigned EC number	0.3193	0.8822	0.9138	yes	no
A7MB76	CE044_BOVIN	No assigned EC number	0.3140	0.8706	0.9040	yes	no
Q6PBY7	CE044_DANRE	No assigned EC number	0.3302	0.8729	0.9174	yes	no
A5PLN9	CE044_HUMAN	No assigned EC number	0.3187	0.8706	0.9040	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00010269001 SubName- Full=Chromosome undetermined scaffold_252, whole genome shotgun sequence; (440 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	433
pfam06159	235	pfam06159, DUF974, Protein of unknown function (DU	1e-102

>gnl|CDD|218917 pfam06159, DUF974, Protein of unknown function (DUF974)

 Score =  302 bits (775), Expect = e-102
 Identities = 115/236 (48%), Positives = 151/236 (63%), Gaps = 7/236 (2%)

Query: 88  LVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIR 147
           L LPQ+FG+IYLGETF SY+ +NN S+ EVRDV IKAE+QT  QR+ L D+  +PVE++R
Sbjct: 1   LTLPQSFGSIYLGETFSSYLCVNNESSKEVRDVSIKAELQTPSQRLNLSDSVDAPVETLR 60

Query: 148 AGGRYDFIVEHDVKELGAHTLVCTALYSDGEGERKYLPQFFKFIVSNPLSVRTKVRVVKE 207
            G   DF+V  DVKE G H LVCT  Y++  GE +Y  +FFKFIV NPLSVRTK   +++
Sbjct: 61  PGESLDFVVSFDVKEEGTHILVCTVSYTEASGETRYFRKFFKFIVKNPLSVRTKFYQLED 120

Query: 208 I----TFLEACIENHTKSNLYMDQVEFEPSQNWSATMLKADGPHSDYNAQSREIFKPPVL 263
           +     +LEA IEN T+ NL++++V  EPS  + AT L  +    D +     + K PVL
Sbjct: 121 LSRRRVYLEAQIENITEDNLFLEKVTLEPSPGYKATSLNWEPSLGDVDGLDGGMDKRPVL 180

Query: 264 IRSGGGIHNYLYQLKMLSHGSSSPVKVQGSNVLGKLQITWRTNLGEPGRLQTQQIL 319
               G I  YL+ LK    G+   +K+ G   LGKL I WRT +GE GRLQT Q+ 
Sbjct: 181 --KPGDIRQYLFCLKP-KEGALEELKLDGRTNLGKLDIVWRTAMGEKGRLQTSQLQ 233

Family of uncharacterized eukaryotic proteins. Length = 235

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	433
KOG2625	348	consensus Uncharacterized conserved protein [Funct	100.0
PF06159	249	DUF974: Protein of unknown function (DUF974); Inte	100.0
PF07919	554	Gryzun: Gryzun, putative trafficking through Golgi	99.91
KOG4386	809	consensus Uncharacterized conserved protein [Funct	99.47
PF12735	306	Trs65: TRAPP trafficking subunit Trs65; InterPro:	98.88
PF08626	1185	TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC	98.32
PF12742	57	Gryzun-like: Gryzun, putative Golgi trafficking	97.75
PF12584	147	TRAPPC10: Trafficking protein particle complex sub	97.68
PF07705	101	CARDB: CARDB; InterPro: IPR011635 The APHP (acidic	96.87
PF00927	107	Transglut_C: Transglutaminase family, C-terminal i	96.7
PF07919	554	Gryzun: Gryzun, putative trafficking through Golgi	96.11
PF10633	78	NPCBM_assoc: NPCBM-associated, NEW3 domain of alph	95.14
PF14874	102	PapD-like: Flagellar-associated PapD-like	94.48
PF07705	101	CARDB: CARDB; InterPro: IPR011635 The APHP (acidic	93.93
PF05753	181	TRAP_beta: Translocon-associated protein beta (TRA	93.27
PF10633	78	NPCBM_assoc: NPCBM-associated, NEW3 domain of alph	90.28
PF05753	181	TRAP_beta: Translocon-associated protein beta (TRA	87.95
PF11797	140	DUF3324: Protein of unknown function C-terminal (D	87.41
PF00207	92	A2M: Alpha-2-macroglobulin family; InterPro: IPR00	86.0
smart00809	104	Alpha_adaptinC2 Adaptin C-terminal domain. Adaptin	85.99
PF02883	115	Alpha_adaptinC2: Adaptin C-terminal domain; InterP	85.52
PF14874	102	PapD-like: Flagellar-associated PapD-like	85.49
PF13584	484	BatD: Oxygen tolerance	82.3
PF00927	107	Transglut_C: Transglutaminase family, C-terminal i	81.39

>KOG2625 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=6.2e-94  Score=661.34  Aligned_cols=332  Identities=31%  Similarity=0.556  Sum_probs=308.0

Q ss_pred             cccccccccceeecceeeEEEEEEcCCCCceeeEEEEEEEeCCCceeeccCCCCCCccccCCCCeeeEEEEEEcccccce
Q 013971           87 LLVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAH  166 (433)
Q Consensus        87 ~L~LP~sfG~iylGEtF~~~i~v~N~s~~~v~~V~ikvelqT~s~r~~L~~~~~~~~~~L~pg~~ld~iv~~~lke~G~h  166 (433)
                      +|.+||.||+|||||||++||+++|+|++.|++|.+|+||||.+||+.|... ...+.+++|.++.+.||+||+||+|+|
T Consensus         1 ~l~~pq~f~niflgetfs~yinv~nds~k~v~~i~lk~dlqtssqrl~l~~s-~~~~aei~~~~c~~~vi~hevkeig~h   79 (348)
T KOG2625|consen    1 MLIAPQMFENIFLGETFSFYINVHNDSEKTVKDILLKADLQTSSQRLNLPAS-NAAAAEIEPDCCEDDVIHHEVKEIGQH   79 (348)
T ss_pred             CccchhhhcceeeccceEEEEEEecchhhhhhhheeeecccccceeeccccc-hhhhhhcCccccchhhhhHHHHhhccE
Confidence            4789999999999999999999999999999999999999999999999643 244668999999999999999999999


Q ss_pred             EEEEEEEEEcCCCceeecCeeEEEEeecCeEEEEEEEEe-------CCeeEEEEEEEecCcccEEEEeEEeeecCCccee
Q 013971          167 TLVCTALYSDGEGERKYLPQFFKFIVSNPLSVRTKVRVV-------KEITFLEACIENHTKSNLYMDQVEFEPSQNWSAT  239 (433)
Q Consensus       167 ~L~c~V~Y~~~~ge~~~frK~ykF~v~~Pl~VrTK~~~~-------~~~~~LEaqiqN~s~~pl~le~v~lep~~~~~~~  239 (433)
                      +|+|+|+|++.+||.++|||||||+|.+|++||||||++       .+++||||||||+|..+|+||+|+|+|+.+|.++
T Consensus        80 ilicavny~tq~ge~myfrkffkf~v~kpidvktkfynaesdlssv~~dvfleaqien~s~a~mflekv~ldps~~ynvt  159 (348)
T KOG2625|consen   80 ILICAVNYKTQAGEKMYFRKFFKFPVLKPIDVKTKFYNAESDLSSVNDDVFLEAQIENMSNANMFLEKVELDPSIHYNVT  159 (348)
T ss_pred             EEEEEEeeeccCccchhHHhhccccccccccccceeecccccccccchhhhhhhhhhcccccchhhhhhccCchheecce
Confidence            999999999999999999999999999999999999986       5789999999999999999999999999999999


Q ss_pred             eecCCCCCCCCCcccccccCCceEEeCCCCeeeEEEEEeecCCCCCCCccccCceeeEEEEEEEEcCCCCCeeeeEEeee
Q 013971          240 MLKADGPHSDYNAQSREIFKPPVLIRSGGGIHNYLYQLKMLSHGSSSPVKVQGSNVLGKLQITWRTNLGEPGRLQTQQIL  319 (433)
Q Consensus       240 ~ln~~~~~~~~~~~~~~~~~~~~l~l~~gd~~q~lf~L~p~~~~~~~~~~~~g~~~lG~L~I~WRs~~Ge~G~L~Ts~l~  319 (433)
                      +++.+.+.++..++    |.. ..+++|.|+|||||||+||.+..++..-.++.+.+|||||.||++|||+||||||+|+
T Consensus       160 ~i~~~~e~gdcvst----fg~-~~~lkp~d~rq~l~cl~pk~d~~~~~gi~k~lt~igkldi~wktnlgekgrlqts~lq  234 (348)
T KOG2625|consen  160 EIAHEDEAGDCVST----FGS-GALLKPKDIRQFLFCLKPKADFAEKAGIIKDLTSIGKLDISWKTNLGEKGRLQTSALQ  234 (348)
T ss_pred             eecchhhccccccc----ccc-ccccCccchhhheeecCchHHHHHhhccccccceeeeeEEEeeccccccccchHHHHH
Confidence            99888777665443    332 2346789999999999999877645555678899999999999999999999999999


Q ss_pred             eccCccCCeEEEEEecCceEEeCCcEEEEEEEEeCCCCccccEEEEEEeCCCCCceeEEEecccceeeeeeCCCCeEEEE
Q 013971          320 GTTITSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFH  399 (433)
Q Consensus       320 ~~~~~~~dl~l~v~~~P~~v~v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~~~~~Lg~L~P~~s~~~~  399 (433)
                      |.+|+++|++|+++.+|+.|.+++||.++|+|+|+|+|.|+ |.+.|++..   ..-++|||+++++||+|.|.+...|.
T Consensus       235 riapgygdvrlsle~~p~~vdleepf~iscki~ncserald-l~l~l~~~n---nrhi~~c~~sg~qlgkl~ps~~l~~a  310 (348)
T KOG2625|consen  235 RIAPGYGDVRLSLEAIPACVDLEEPFEISCKITNCSERALD-LQLELCNPN---NRHIHFCGISGRQLGKLHPSQHLCFA  310 (348)
T ss_pred             hhcCCCCceEEEeeccccccccCCCeEEEEEEcccchhhhh-hhhhhcCCC---CceeEEeccccccccCCCCcceeeeE
Confidence            99999999999999999999999999999999999999999 999998864   35799999999999999999999999


Q ss_pred             EEEEecccceEEeCceEEEeCCCCeEEee
Q 013971          400 LNLIATKLGVQRITGITVFDKLEKITYDS  428 (433)
Q Consensus       400 L~l~pl~~Glq~isgI~l~D~~~~~~y~~  428 (433)
                      |+++|...|+|+|+||+|+|+++||+|||
T Consensus       311 l~l~~~~~giqsisgiritdtf~kr~ye~  339 (348)
T KOG2625|consen  311 LNLFPSTQGIQSISGIRITDTFLKRIYEH  339 (348)
T ss_pred             EeeccchhcceeecceEeehhhhhhhhcc
Confidence            99999999999999999999999999997

>PF06159 DUF974: Protein of unknown function (DUF974); InterPro: IPR010378 This is a family of uncharacterised eukaryotic proteins

Probab=100.00  E-value=1.1e-69  Score=525.30  Aligned_cols=233  Identities=44%  Similarity=0.709  Sum_probs=206.2

Q ss_pred             ccccccccceeecceeeEEEEEEcCCCCceeeEEEEEEEeCCCc--eeeccCCCCC--CccccCCCCeeeEEEEEEcccc
Q 013971           88 LVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQ--RILLLDTSKS--PVESIRAGGRYDFIVEHDVKEL  163 (433)
Q Consensus        88 L~LP~sfG~iylGEtF~~~i~v~N~s~~~v~~V~ikvelqT~s~--r~~L~~~~~~--~~~~L~pg~~ld~iv~~~lke~  163 (433)
                      |+||+|||+|||||||+||||+||+++++|++|.|||||||+++  |+.|.++...  ++.+|+||+++|+||+|+|||+
T Consensus         1 L~LP~sfG~iylGEtF~~~l~~~N~s~~~v~~v~ikvemqT~s~~~r~~L~~~~~~~~~~~~L~p~~~l~~iv~~~lkE~   80 (249)
T PF06159_consen    1 LTLPQSFGSIYLGETFSCYLSVNNDSNKPVRNVRIKVEMQTPSQSLRLPLSDNENSDSPVASLAPGESLDFIVSHELKEL   80 (249)
T ss_pred             CCCCcccCCEeecCCEEEEEEeecCCCCceEEeEEEEEEeCCCCCccccCCCCccccccccccCCCCeEeEEEEEEeeec
Confidence            78999999999999999999999999999999999999999999  9999765544  5678999999999999999999


Q ss_pred             cceEEEEEEEEEcC---CCceeecCeeEEEEeecCeEEEEEEEEeCC--------eeEEEEEEEecCcccEEEEeEEeee
Q 013971          164 GAHTLVCTALYSDG---EGERKYLPQFFKFIVSNPLSVRTKVRVVKE--------ITFLEACIENHTKSNLYMDQVEFEP  232 (433)
Q Consensus       164 G~h~L~c~V~Y~~~---~ge~~~frK~ykF~v~~Pl~VrTK~~~~~~--------~~~LEaqiqN~s~~pl~le~v~lep  232 (433)
                      |+|+|+|+|+|+++   +||+|+|||||||+|.+||+||||++++.+        ++||||||||+|+.||+||+|+|+|
T Consensus        81 G~h~L~c~VsY~~~~~~~g~~~tfRK~ykF~v~~PL~VktK~~~~~~~~~~~~~~~~~LEaqlqN~s~~pl~Le~v~lep  160 (249)
T PF06159_consen   81 GNHTLVCTVSYTDPTETSGERRTFRKFYKFQVLNPLSVKTKVYNLEDDSSLSPRERVFLEAQLQNISSGPLFLEKVKLEP  160 (249)
T ss_pred             CceEEEEEEEEecCcccCCccceEeeeeEEeCCCCcEEEEEEEecCCccccccceeEEEEEEEEecCCCceEEEEEEeec
Confidence            99999999999999   999999999999999999999999999976        9999999999999999999999999


Q ss_pred             cCCcceeeecCCCCCCCCCcccccccCCceEEeCCCCeeeEEEEEeecCCCCCCCccccCceeeEEEEEEEEcCCCCCee
Q 013971          233 SQNWSATMLKADGPHSDYNAQSREIFKPPVLIRSGGGIHNYLYQLKMLSHGSSSPVKVQGSNVLGKLQITWRTNLGEPGR  312 (433)
Q Consensus       233 ~~~~~~~~ln~~~~~~~~~~~~~~~~~~~~l~l~~gd~~q~lf~L~p~~~~~~~~~~~~g~~~lG~L~I~WRs~~Ge~G~  312 (433)
                      .++|++.++||+....+.......+......+++|+|+|||+|||+++.+........++.+.+|||+|.||++|||+||
T Consensus       161 ~~~~~~~~ln~~~~~~~~~~~~~~~~~~~~~~L~P~d~~qylF~l~~~~~~~~~~~~~~~~~~lGkL~I~WRs~~Ge~Gr  240 (249)
T PF06159_consen  161 SPGFKVTDLNWEPSGESSDGEFGGISSGSRPYLQPGDVRQYLFCLTPKPEGAQNDSGADGRTNLGKLDIVWRSNMGERGR  240 (249)
T ss_pred             CCCceeEecccccccccccccccccccCCcceeCCCCEEEEEEEEEECCccccccccccCcceeeEEEEEEECCCCCCce
Confidence            99999999998765433221111111122345789999999999999987333455678899999999999999999999


Q ss_pred             eeEEeeee
Q 013971          313 LQTQQILG  320 (433)
Q Consensus       313 L~Ts~l~~  320 (433)
                      |||++|+|
T Consensus       241 LqT~~L~r  248 (249)
T PF06159_consen  241 LQTSQLQR  248 (249)
T ss_pred             eehhhccc
Confidence            99999986

>PF07919 Gryzun: Gryzun, putative trafficking through Golgi; InterPro: IPR012880 The proteins featured in this family are all hypothetical eukaryotic proteins of unknown function

Probab=99.91  E-value=5.4e-22  Score=212.42  Aligned_cols=313  Identities=17%  Similarity=0.234  Sum_probs=229.8

Q ss_pred             ccccccccceeecceeeEEEEEEcCCCCceeeEEEEEEEeC--------C-Cceee-c--cC-------CCCCCccccCC
Q 013971           88 LVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQT--------D-KQRIL-L--LD-------TSKSPVESIRA  148 (433)
Q Consensus        88 L~LP~sfG~iylGEtF~~~i~v~N~s~~~v~~V~ikvelqT--------~-s~r~~-L--~~-------~~~~~~~~L~p  148 (433)
                      +.+|..-+-+|+||.+..-|.|.|+..... ++.+.+.+..        . ..... .  .+       ....+++.|.+
T Consensus       177 I~~~~~~~~~l~gE~~~i~i~I~n~e~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~l~~  255 (554)
T PF07919_consen  177 IKLPNHKPPALTGEFYPIPITISNNEDEEA-SGVLEVRLLHPSQLGVSSEETEDLSQVNWDSDKDDEPLFLGIPLGELAP  255 (554)
T ss_pred             EEeCCCCCCeEcCCEEEEEEEEEcCCCccc-eeEEEEEEecccccccccccCccceecccccccccchhccCcccccCCC
Confidence            455678889999999999999999975543 3444455541        0 11110 0  00       01234678999


Q ss_pred             CCeeeEEEEEEcccccceEEEEEEEEEc--C-CCcee-ecCeeEEEEeecCe----EEEEEEEE----------------
Q 013971          149 GGRYDFIVEHDVKELGAHTLVCTALYSD--G-EGERK-YLPQFFKFIVSNPL----SVRTKVRV----------------  204 (433)
Q Consensus       149 g~~ld~iv~~~lke~G~h~L~c~V~Y~~--~-~ge~~-~frK~ykF~v~~Pl----~VrTK~~~----------------  204 (433)
                      |++....++......|.+.|.+++.|..  . +.... +-.+-+++.+.+||    ++.++++.                
T Consensus       256 ~~s~~~~l~i~~~~~~~~~L~i~~~Y~l~~~~~~~~~i~~~~~~~l~~~~PF~~~y~~~~~~~~~~~~~p~~f~~~~~~~  335 (554)
T PF07919_consen  256 GSSITVTLYIRTSRPGEYELSISVSYHLDVESDPETPISKTKTVQLPVINPFEANYDFSPRFHPDPWDMPSPFDVDGSSD  335 (554)
T ss_pred             CCcEEEEEEEEeCCceeEEEEEEEEEEEecCCCCceeEEEeEEEeeeEEcCEEeeeeEEeeeccCCccCCcccccccccc
Confidence            9999999999999999999999999974  2 22222 33344999999999    66666642                


Q ss_pred             ------------------eCCeeEEEEEEEecCcccEEEEeEEeeecCCcceeeecCCCCCCCCCcccccccCCceEEeC
Q 013971          205 ------------------VKEITFLEACIENHTKSNLYMDQVEFEPSQNWSATMLKADGPHSDYNAQSREIFKPPVLIRS  266 (433)
Q Consensus       205 ------------------~~~~~~LEaqiqN~s~~pl~le~v~lep~~~~~~~~ln~~~~~~~~~~~~~~~~~~~~l~l~  266 (433)
                                        .+.+++|.++++|.++++|.|++++|+..................      .  ......++
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~s~a~~~L~I~~~~l~~~~~~~~~~~~~~~~~~~------~--~~~~~~l~  407 (554)
T PF07919_consen  336 FQTLNPEPLTRDGILSVGLNQPWCLNSDIESFAPEPLEIEDISLEVLSSNGGASCDVSSEDSS------S--PESGTVLQ  407 (554)
T ss_pred             cccccccccccccccccccCCCeEEEccceecCCCceEEEEEEEEEecCCCceeeeecccccc------C--CCccceeC
Confidence                              235689999999999999999999999766444332111110000      0  00022345


Q ss_pred             CCCeeeEEEEEe--ecCCCCCCCccccCceeeEEEEEEEEc-CCCCCeeeeEEeeeeccCccCCeEEEE-EecCceEEeC
Q 013971          267 GGGIHNYLYQLK--MLSHGSSSPVKVQGSNVLGKLQITWRT-NLGEPGRLQTQQILGTTITSKEIELNV-VEVPSVVGID  342 (433)
Q Consensus       267 ~gd~~q~lf~L~--p~~~~~~~~~~~~g~~~lG~L~I~WRs-~~Ge~G~L~Ts~l~~~~~~~~dl~l~v-~~~P~~v~v~  342 (433)
                      +++.+...||+.  .....   .........+|.|.|+||| ..+..+...++.+..+.....+.++.| +++|+...++
T Consensus       408 ~~~~~~~~f~~~~~~~~~~---~~~~~~~~~~g~~~I~WrR~~~~s~~~~~~t~l~lP~~~v~~~~~~v~~~~p~~~~~~  484 (554)
T PF07919_consen  408 PGECREDQFCLRLDVQKLS---LDDRRNVTLLGSLVIKWRRNSSNSSDPVVTTPLPLPRVNVPSSPLRVLASVPPSAIVG  484 (554)
T ss_pred             ccccccccccccccccccc---cccCccceeEEEEEEEEEECCCCCCCceEEEEeecCceEccCCCcEEEEecCCccccC
Confidence            678887777743  21110   1112346889999999999 566667888888887776666666666 7889999999


Q ss_pred             CcEEEEEEEEeCCCCccccEEEEEEeCCCCCceeEEEecccceeeeeeCCCCeEEEEEEEEecccceEEeCceEEEe
Q 013971          343 KPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRITGITVFD  419 (433)
Q Consensus       343 ~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~~~~~Lg~L~P~~s~~~~L~l~pl~~Glq~isgI~l~D  419 (433)
                      .||++.|+|+|+|.+.+. +.+.|+.++     +|+++|.+...+ .|.|+++.++.++|+|+.+|++.+|.++|.|
T Consensus       485 ~~~~l~~~I~N~T~~~~~-~~~~me~s~-----~F~fsG~k~~~~-~llP~s~~~~~y~l~pl~~G~~~lP~l~v~d  554 (554)
T PF07919_consen  485 EPFTLSYTIENPTNHFQT-FELSMEPSD-----DFMFSGPKQTTF-SLLPFSRHTVRYNLLPLVAGWWILPRLKVRD  554 (554)
T ss_pred             cEEEEEEEEECCCCccEE-EEEEEccCC-----CEEEECCCcCce-EECCCCcEEEEEEEEEccCCcEECCcEEEeC
Confidence            999999999999999998 999998875     699999999999 5999999999999999999999999999987

The region in question is approximately 150 residues long.

>KOG4386 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.47  E-value=4.8e-15  Score=151.73  Aligned_cols=293  Identities=18%  Similarity=0.191  Sum_probs=192.6

Q ss_pred             ceeeEEEEEEcCCCCceeeEEEEEEEeCCCc-----eee-------cc-C-----CCCCCccccCCCCeeeEEEEEEccc
Q 013971          101 ETFCSYISINNSSTLEVRDVVIKAEIQTDKQ-----RIL-------LL-D-----TSKSPVESIRAGGRYDFIVEHDVKE  162 (433)
Q Consensus       101 EtF~~~i~v~N~s~~~v~~V~ikvelqT~s~-----r~~-------L~-~-----~~~~~~~~L~pg~~ld~iv~~~lke  162 (433)
                      |.+..++.+.-.....+.++..||++..+..     |.+       +. +     ....++..+-+|+......+-+.--
T Consensus       448 E~~~~~lki~~~kts~~~e~~~kv~~~~Ge~tsLT~rn~~k~~~~~~~~d~~~~~~k~~~a~~v~~~EQ~~Kmlyvrcgt  527 (809)
T KOG4386|consen  448 ENIIGFLKIGVAKTSVKLESVEKVDCLIGEVTSLTIRNTCKSSPIHGLLDFKRKEQKHAEAAAVLFVEQELKMLYVRCGT  527 (809)
T ss_pred             heEEEEEEeeechhhhhhhhhhhcCcccccccceeeecccccCCchhhhhhhhHhhccCchhhcchHHHHHHHHHHhhhh
Confidence            4444455555554555566666666655431     110       00 0     0012333444555433333333334


Q ss_pred             ccceEEEEEEEEEcCC-------------CceeecCeeEEEEeecCeEEEEEEEEeCC-----eeEEEEEEEecCcccEE
Q 013971          163 LGAHTLVCTALYSDGE-------------GERKYLPQFFKFIVSNPLSVRTKVRVVKE-----ITFLEACIENHTKSNLY  224 (433)
Q Consensus       163 ~G~h~L~c~V~Y~~~~-------------ge~~~frK~ykF~v~~Pl~VrTK~~~~~~-----~~~LEaqiqN~s~~pl~  224 (433)
                      +|-...-+.|+|-..+             -+.++.--.|-|.|.-||-+ |||..+.+     .+.+...+--.++|.+.
T Consensus       528 vgsrmflvyvsyLinttVeekeivckchkdeTvtietvfpfdvavkFvs-tkfehlervyadIpfllmtdLlsaspwAlt  606 (809)
T KOG4386|consen  528 VGSRMFLVYVSYLINTTVEEKEIVCKCHKDETVTIETVFPFDVAVKFVS-TKFEHLERVYADIPFLLMTDLLSASPWALT  606 (809)
T ss_pred             hccchhhHHHHHHhhhHHHHhhHhhhccccceEEEEEEeeeeeeeeeeh-hhhhhccChhhhhhHHHHHHHhhhchHHHH
Confidence            4444444455665431             23445555577777777765 77766644     12233333344577666


Q ss_pred             EEeEEeeecCCcceeeecCCCCCCCCCcccccccCCceEEeCCCCeeeEEEEEeecCCCCCCCccccCceeeEEEEEEEE
Q 013971          225 MDQVEFEPSQNWSATMLKADGPHSDYNAQSREIFKPPVLIRSGGGIHNYLYQLKMLSHGSSSPVKVQGSNVLGKLQITWR  304 (433)
Q Consensus       225 le~v~lep~~~~~~~~ln~~~~~~~~~~~~~~~~~~~~l~l~~gd~~q~lf~L~p~~~~~~~~~~~~g~~~lG~L~I~WR  304 (433)
                      |-+-+++..+.++-.+    +..+          +...+.++-|+...-+|||....-     ...+|.+.+|++-|.||
T Consensus       607 IVsSelqlapsmttvd----qleS----------qvdnvilqtgEsasecfclqcpsl-----gniEggvatGhyiisWk  667 (809)
T KOG4386|consen  607 IVSSELQLAPSMTTVD----QLES----------QVDNVILQTGESASECFCLQCPSL-----GNIEGGVATGHYIISWK  667 (809)
T ss_pred             HHHHHHhhhhhheeee----cccc----------cccchhhhcccceeeeeeEecccc-----ccccCCCccceEEEEEe
Confidence            6666666555433221    1111          112345667899999999998642     23468899999999999


Q ss_pred             cCCC-CCeeeeEEeeeeccCccCCeEEEE-EecCceEEeCCcEEEEEEEEeCCCCccccEEEEEEeCCCCCceeEEEecc
Q 013971          305 TNLG-EPGRLQTQQILGTTITSKEIELNV-VEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGL  382 (433)
Q Consensus       305 s~~G-e~G~L~Ts~l~~~~~~~~dl~l~v-~~~P~~v~v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~  382 (433)
                      |... |.--.-|+.+.++-.....+.|.| .++|+...|++|..+.+.+.|+|+-..+ +++.++++|     +||++|.
T Consensus       668 RtsameNipiittVitLphviVe~iPlhvnadlpsfgrVReslpvkyhLqnktdlvqd-veisvepsD-----aFMFSGl  741 (809)
T KOG4386|consen  668 RTSAMENIPIITTVITLPHVIVEAIPLHVNADLPSFGRVRESLPVKYHLQNKTDLVQD-VEISVEPSD-----AFMFSGL  741 (809)
T ss_pred             ecccccCCCceeeecccccceeeeccceeecCCCCcceecccccEEEEeccccceeee-EEeecccch-----hheeccc
Confidence            9633 333345666777777788888888 7899999999999999999999999998 999998886     8999999


Q ss_pred             cceeeeeeCCCCeEEEEEEEEecccceEEeCceEEEeC
Q 013971          383 RIMALAPVEAFGSTDFHLNLIATKLGVQRITGITVFDK  420 (433)
Q Consensus       383 ~~~~Lg~L~P~~s~~~~L~l~pl~~Glq~isgI~l~D~  420 (433)
                      +.+++ .+.||.+.++.++++||.+|.|.+|.|.|.-.
T Consensus       742 kqirl-riLPGteqemlynfypLmAGyqqlPslninll  778 (809)
T KOG4386|consen  742 KQIRL-RILPGTEQEMLYNFYPLMAGYQQLPSLNINLL  778 (809)
T ss_pred             ceEEE-EEcCCCceEEEEEEehhhchhhhCCcccccCc
Confidence            99999 89999999999999999999999999887543

>PF12735 Trs65: TRAPP trafficking subunit Trs65; InterPro: IPR024662 This family is one of the subunits of the TRAPP Golgi trafficking complex []

Probab=98.88  E-value=2.5e-07  Score=92.82  Aligned_cols=101  Identities=19%  Similarity=0.284  Sum_probs=83.1

Q ss_pred             CeEEEEEecCceEEeCCcEEEEEEEEeCCCCccccEEEEEEeCC------------------------------------
Q 013971          327 EIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQND------------------------------------  370 (433)
Q Consensus       327 dl~l~v~~~P~~v~v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~------------------------------------  370 (433)
                      .+.+.. .-|..|+++++|..++.|.|+|+..++ |.|.+.+..                                    
T Consensus       157 gv~~sF-~gp~~V~~Ge~F~w~v~ivN~S~~~r~-L~l~~~~~r~~~~~~~~~~~~~~~~s~~~~~~~~~~~v~~en~~~  234 (306)
T PF12735_consen  157 GVTFSF-SGPSSVKVGEPFSWKVFIVNRSSSPRK-LALYVPPRRRRNDERSNSPPPNPSSSSNLNNKQIADAVTDENIVQ  234 (306)
T ss_pred             CeEEEE-eCCceEecCCeEEEEEEEEECCCCCee-EEEEecCccccccccccCCCCCcccccccccccccccceehhHHH
Confidence            344443 336889999999999999999999998 999888711                                    


Q ss_pred             ------CCC-ceeEEEecccceeeeeeCCCCeEEEEEEEEecccceEEeCceEEEeCCCCeEEeecC
Q 013971          371 ------SDE-EKVVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRITGITVFDKLEKITYDSLP  430 (433)
Q Consensus       371 ------~~~-~~~~~~~G~~~~~Lg~L~P~~s~~~~L~l~pl~~Glq~isgI~l~D~~~~~~y~~~~  430 (433)
                            ... ..++++-.. .+++|.|.|+++..+.|.++|+.+|++.|.||+|+|..++..+|+=.
T Consensus       235 ~~~~~~~~~~~~gli~Lsn-DiriGpL~P~~c~~~eL~fi~l~~G~~~L~~lkvvDl~t~e~~di~~  300 (306)
T PF12735_consen  235 AMQKYSSVEESTGLICLSN-DIRIGPLAPGACYSVELRFIALSPGVHNLEGLKVVDLNTNEHVDIGD  300 (306)
T ss_pred             HhhhhcccccCCceEEecc-cccccccCCCceEEEEEEEEEeccceEeecceEEEECCCCceEEeCC
Confidence                  000 235655555 78999999999999999999999999999999999999999998743

TRAPP subunits are found in two different sized complexes, TRAPP I and TRAPP II. While both complexes contain the same seven subunits, Bet3p, Bet5p, Trs20p, Trs23p, Trs31p, Trs33p and Trs85p, with TRAPPC human equivalents, TRAPP II has the additional three subunits ,Trs65p, Trs120p and Trs130p []. While it has been implicated in cell wall biogenesis and stress response, the role of Trs65 in TRAPP II is supported by the findings that the protein co-localises with Trs130p, and deletion of TRS65 in yeast leads to a conditional lethal phenotype if either one of the other TRAPP II-specific subunits is modified []. Furthermore, the trs65 mutant has reduced Ypt31/32p guanine nucleotide exchange, GEF, activity []. Trs65 is also known as killer toxin-resistance protein 11.

>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway

Probab=98.32  E-value=0.00056  Score=80.32  Aligned_cols=301  Identities=19%  Similarity=0.229  Sum_probs=176.2

Q ss_pred             ccccccceeecceeeEEEEEEcCCCCceeeEEEEEEEeCC-Cceeecc----------CCC-----CC-----CccccCC
Q 013971           90 LPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTD-KQRILLL----------DTS-----KS-----PVESIRA  148 (433)
Q Consensus        90 LP~sfG~iylGEtF~~~i~v~N~s~~~v~~V~ikvelqT~-s~r~~L~----------~~~-----~~-----~~~~L~p  148 (433)
                      ++++-=.+|=||+..+.|.+.|.|..+|..+.+...=.|. .-...+.          +.+     ..     .-..|.|
T Consensus       788 l~~~~~mlleGE~~~~~ItL~N~S~~pvd~l~~sf~DS~~~~~~~~l~~k~l~~~e~yelE~~l~~~~~~~i~~~~~I~P  867 (1185)
T PF08626_consen  788 LTQGALMLLEGEKQTFTITLRNTSSVPVDFLSFSFQDSTIEPLQKALSNKDLSPDELYELEWQLFKLPAFRILNKPPIPP  867 (1185)
T ss_pred             CCCcceEEECCcEEEEEEEEEECCccccceEEEEEEeccHHHHhhhhhcccCChhhhhhhhhhhhcCcceeecccCccCC
Confidence            4555456799999999999999999999998887641111 0000110          000     00     0017899


Q ss_pred             CCeeeEEEEEEcccc--cceEEEEEEEEEc--CCCceeecCee---EEEEeecCeEEE-EEEEEe---------------
Q 013971          149 GGRYDFIVEHDVKEL--GAHTLVCTALYSD--GEGERKYLPQF---FKFIVSNPLSVR-TKVRVV---------------  205 (433)
Q Consensus       149 g~~ld~iv~~~lke~--G~h~L~c~V~Y~~--~~ge~~~frK~---ykF~v~~Pl~Vr-TK~~~~---------------  205 (433)
                      |++..+-++.+.+..  ..+.....+.|..  .+++.-+.|++   +...|.+.++|. -.+..+               
T Consensus       868 g~~~~~~~~~~~~~~~~~~~~~~i~l~y~~~~~~~~~~y~Rql~ipl~vtV~~slev~~~dilp~~~~~~~~~~~~~~~~  947 (1185)
T PF08626_consen  868 GESATFTVEVDGKPGPIQLTYADIQLEYGYSGEDSSTFYTRQLSIPLTVTVNPSLEVTRCDILPLNSDSVSSNSDSWISY  947 (1185)
T ss_pred             CCEEEEEEEecCcccccceeeeeEEEEecccCCCCCCCeeEEEEEEEEEEEeceEEEeeeeEEecccccccccCcchhhh
Confidence            999999888776653  2455555667763  34555677777   556666666553 233322               


Q ss_pred             ------------CCeeEEEEEEEecCcccEEEEeEEeeecCCcceee--ecCCCCCCCCCc---ccccc------cC-Cc
Q 013971          206 ------------KEITFLEACIENHTKSNLYMDQVEFEPSQNWSATM--LKADGPHSDYNA---QSREI------FK-PP  261 (433)
Q Consensus       206 ------------~~~~~LEaqiqN~s~~pl~le~v~lep~~~~~~~~--ln~~~~~~~~~~---~~~~~------~~-~~  261 (433)
                                  .+-++|...|.|....+|.++   ++-...+....  +..    +....   |...+      +. .|
T Consensus       948 ~~~~~~~~~~~~~~~clL~lDlrNsw~~~~~v~---l~~~~~~~~~~~~I~p----g~t~Ri~vPi~Ri~l~~~~~~~~p 1020 (1185)
T PF08626_consen  948 ITSLKSDVNDDSSDYCLLLLDLRNSWPNPLSVN---LHYDEDFSSSEITIEP----GHTSRIIVPIKRIYLEDPDFSFKP 1020 (1185)
T ss_pred             hhhhcccccCCCCCeEEEEEEEEecCCCceEEE---EEeccCccccceEECC----CCeEEEEEEecccccCCcccccCc
Confidence                        245899999999999988832   11122222211  111    10000   00000      00 11


Q ss_pred             eEEeCCCCeeeEEEEEeecCCCCCCCcccc----CceeeEEEEEEEEcCCCCCeeeeEEee-eec-----cCccCCeEEE
Q 013971          262 VLIRSGGGIHNYLYQLKMLSHGSSSPVKVQ----GSNVLGKLQITWRTNLGEPGRLQTQQI-LGT-----TITSKEIELN  331 (433)
Q Consensus       262 ~l~l~~gd~~q~lf~L~p~~~~~~~~~~~~----g~~~lG~L~I~WRs~~Ge~G~L~Ts~l-~~~-----~~~~~dl~l~  331 (433)
                      .  .+....+||+=.   +....+.....+    ....+-+|...|+...+..|.+.--.+ ...     ..-.+++.+.
T Consensus      1021 i--p~l~~~rqfv~s---k~s~eee~~~re~FW~RE~ll~~l~~~W~~~~~~~G~i~lR~~irLt~~mv~~L~~~~i~i~ 1095 (1185)
T PF08626_consen 1021 I--PSLSRNRQFVVS---KLSEEEERAMRELFWYREELLSRLKGTWKESSNSSGEIDLRGIIRLTPRMVDILRLDPIQID 1095 (1185)
T ss_pred             C--CCcccCceeEEC---CCCHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCcEEEEcccccccCHHHHHhhccCccceE
Confidence            1  112234565422   211110000011    025688999999987666888665555 221     2345566555


Q ss_pred             EE---ecCc---------eEEeCCcEEEEEEEEeCCCCccccEEEEEEeCC------CCCceeEEEecccceeeeeeCCC
Q 013971          332 VV---EVPS---------VVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQND------SDEEKVVMINGLRIMALAPVEAF  393 (433)
Q Consensus       332 v~---~~P~---------~v~v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~------~~~~~~~~~~G~~~~~Lg~L~P~  393 (433)
                      +.   +-+.         .+.+++.++++++|+|++++.+. +.+....+.      .+...-++|+|.....++.|+|+
T Consensus      1096 ~~l~~~~~~~~~~~~~~~~v~~~~f~~l~v~i~N~s~~~i~-l~~~~~~~~~~~~~~~~~~~ril~~G~Lq~~l~~l~p~ 1174 (1185)
T PF08626_consen 1096 FSLSDDSDSVKVGESSKFSVQVDEFYTLRVTITNRSSRPIS-LRLQPSLDHQNGNVALDLDRRILWNGSLQQPLPELEPG 1174 (1185)
T ss_pred             EEEcccccccccCcceeEEEecCCcEEEEEEeecCCCCcee-eEeeeeccCCCcccccCcCCeEEEEccCcccccccCCC
Confidence            42   1122         36799999999999999999876 544433221      12345799999999999999999


Q ss_pred             CeEEEEEEEE
Q 013971          394 GSTDFHLNLI  403 (433)
Q Consensus       394 ~s~~~~L~l~  403 (433)
                      ++.++.+.++
T Consensus      1175 ~~~~~~~~li 1184 (1185)
T PF08626_consen 1175 ESTEHELSLI 1184 (1185)
T ss_pred             ceEEEEEEEE
Confidence            9999999876

To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].

>PF12742 Gryzun-like: Gryzun, putative Golgi trafficking

Probab=97.75  E-value=8.8e-05  Score=55.26  Aligned_cols=50  Identities=18%  Similarity=0.265  Sum_probs=45.0

Q ss_pred             EEEEEEeCCCCCceeEEEecccceeeeeeCCCCeEEEEEEEEecccceEEeCceEE
Q 013971          362 FEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRITGITV  417 (433)
Q Consensus       362 l~v~l~~~~~~~~~~~~~~G~~~~~Lg~L~P~~s~~~~L~l~pl~~Glq~isgI~l  417 (433)
                      |.|.++.++     .|+++|.+.++. .+.|++..++.++.+|+.+|++.+|.|.|
T Consensus         8 lli~V~~n~-----~F~v~G~~~~~~-~~~~~~~~~i~~~Fipl~aG~~~LP~I~I   57 (57)
T PF12742_consen    8 LLIEVDKND-----NFIVCGPKKMNF-HMWPGQKFEIPYNFIPLTAGFLKLPKINI   57 (57)
T ss_pred             eEEEEcCCC-----ceEEEccceeEE-EEccCceEEEEEEEEEeehheecCccccC
Confidence            557777764     899999999999 89999999999999999999999999864

>PF12584 TRAPPC10: Trafficking protein particle complex subunit 10, TRAPPC10; InterPro: IPR022233 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway

Probab=97.68  E-value=0.00073  Score=60.68  Aligned_cols=80  Identities=14%  Similarity=0.262  Sum_probs=64.0

Q ss_pred             CceEEeCCcEEEEEEEEeC-----------CCCccccEEEEEEeCCCCCceeEEEecccceeeeeeCCCCeEEEEEEEEe
Q 013971          336 PSVVGIDKPFLLKLKLTNQ-----------TDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIA  404 (433)
Q Consensus       336 P~~v~v~~PF~v~~~v~N~-----------s~r~~~~l~v~l~~~~~~~~~~~~~~G~~~~~Lg~L~P~~s~~~~L~l~p  404 (433)
                      +...++++|..++++|+|.           .+.... +...+..+.    +.++++|.+...+ .+..++..+|.+.|+|
T Consensus        24 ~~~~~vGqpi~~~l~I~~~~~W~~~~~~~~~~~~~~-~~yei~a~~----~~WlV~Grrrg~f-~~~~~~~~~~~l~LIP   97 (147)
T PF12584_consen   24 PPPCRVGQPIPAELRIKNSRKWSSEDQEESSNEDTE-FMYEIVADS----DNWLVSGRRRGVF-SLSDGSEHEIPLTLIP   97 (147)
T ss_pred             CcceEeCCeEEEEEEEEEcccCCccccccccCCCcc-EEEEEecCC----CcEEEeccCcceE-EecCCCeEEEEEEEEe
Confidence            5568999999999999995           122233 555553332    4799999998887 6699999999999999


Q ss_pred             cccceEEeCceEEEeCC
Q 013971          405 TKLGVQRITGITVFDKL  421 (433)
Q Consensus       405 l~~Glq~isgI~l~D~~  421 (433)
                      |..|.-.+|.|+|....
T Consensus        98 L~~G~L~lP~V~i~~~~  114 (147)
T PF12584_consen   98 LRAGYLPLPKVEIRPYD  114 (147)
T ss_pred             cccceecCCEEEEEecc
Confidence            99999999999997655

To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. This entry represents a domain which forms part of the TRAPP complex for mediating vesicle docking and fusion in the Golgi apparatus. The fungal version is referred to as Trs130, and an alternative vertebrate alias is TMEM1 [, ].

>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins

Probab=96.87  E-value=0.014  Score=47.60  Aligned_cols=79  Identities=11%  Similarity=0.185  Sum_probs=57.0

Q ss_pred             CCeEEEEEecCceEEeCCcEEEEEEEEeCCCCccccEEEEEEeCCCCCceeEEEecccceeeeeeCCCCeEEEEEEEEec
Q 013971          326 KEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIAT  405 (433)
Q Consensus       326 ~dl~l~v~~~P~~v~v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~~~~~Lg~L~P~~s~~~~L~l~pl  405 (433)
                      .||.+.+...|..+..++++.+++.|+|.-.....++.+.+..++     ...    ....++.|.||++..+.+++.+-
T Consensus         2 pDL~v~~~~~~~~~~~g~~~~i~~~V~N~G~~~~~~~~v~~~~~~-----~~~----~~~~i~~L~~g~~~~v~~~~~~~   72 (101)
T PF07705_consen    2 PDLTVSITVSPSNVVPGEPVTITVTVKNNGTADAENVTVRLYLDG-----NSV----STVTIPSLAPGESETVTFTWTPP   72 (101)
T ss_dssp             --EEE-EEEC-SEEETTSEEEEEEEEEE-SSS-BEEEEEEEEETT-----EEE----EEEEESEB-TTEEEEEEEEEE-S
T ss_pred             CCEEEEEeeCCCcccCCCEEEEEEEEEECCCCCCCCEEEEEEECC-----cee----ccEEECCcCCCcEEEEEEEEEeC
Confidence            577776788899999999999999999996666666778776654     222    35567899999999999999999


Q ss_pred             ccceEEeC
Q 013971          406 KLGVQRIT  413 (433)
Q Consensus       406 ~~Glq~is  413 (433)
                      .+|.+.|.
T Consensus        73 ~~G~~~i~   80 (101)
T PF07705_consen   73 SPGSYTIR   80 (101)
T ss_dssp             S-CEEEEE
T ss_pred             CCCeEEEE
Confidence            99988854

; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.

>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds

Probab=96.70  E-value=0.0039  Score=52.55  Aligned_cols=72  Identities=13%  Similarity=0.205  Sum_probs=55.4

Q ss_pred             EecCceEEeCCcEEEEEEEEeCCCCccccEEEEEEeCCCCCceeEEEeccc------ceeeeeeCCCCeEEEEEEEEecc
Q 013971          333 VEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLR------IMALAPVEAFGSTDFHLNLIATK  406 (433)
Q Consensus       333 ~~~P~~v~v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~~------~~~Lg~L~P~~s~~~~L~l~pl~  406 (433)
                      .++++.+.++++|.+.+.++|.++..+..+.+.|...      .+.++|..      ......|.|+++.++.+.+.|..
T Consensus         5 i~~~~~~~vG~d~~v~v~~~N~~~~~l~~v~~~l~~~------~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i~p~~   78 (107)
T PF00927_consen    5 IKLPGDPVVGQDFTVSVSFTNPSSEPLRNVSLNLCAF------TVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTITPSQ   78 (107)
T ss_dssp             EEEESEEBTTSEEEEEEEEEE-SSS-EECEEEEEEEE------EEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE-HHS
T ss_pred             EEECCCccCCCCEEEEEEEEeCCcCccccceeEEEEE------EEEECCcccccEeEEEcceeeCCCCEEEEEEEEEcee
Confidence            3667888899999999999999888855577877553      57777773      33567899999999999999999


Q ss_pred             cceE
Q 013971          407 LGVQ  410 (433)
Q Consensus       407 ~Glq  410 (433)
                      .|-.
T Consensus        79 yG~~   82 (107)
T PF00927_consen   79 YGPK   82 (107)
T ss_dssp             HEEE
T ss_pred             Eecc
Confidence            9983

Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....

>PF07919 Gryzun: Gryzun, putative trafficking through Golgi; InterPro: IPR012880 The proteins featured in this family are all hypothetical eukaryotic proteins of unknown function

Probab=96.11  E-value=1.1  Score=48.40  Aligned_cols=220  Identities=12%  Similarity=0.163  Sum_probs=122.8

Q ss_pred             cCeEEEEEEEEe----CCeeEEEEEEEecCcccEEEEeEEeeecCCcceeeecCCCC-CCCCCcc--cc-cccCCceEEe
Q 013971          194 NPLSVRTKVRVV----KEITFLEACIENHTKSNLYMDQVEFEPSQNWSATMLKADGP-HSDYNAQ--SR-EIFKPPVLIR  265 (433)
Q Consensus       194 ~Pl~VrTK~~~~----~~~~~LEaqiqN~s~~pl~le~v~lep~~~~~~~~ln~~~~-~~~~~~~--~~-~~~~~~~l~l  265 (433)
                      .+|+++-.|...    ++.+.+++.|.+..+.||.+.++++.-........+..+.. ....+.+  .. ..-....+.+
T Consensus        10 ~~l~~~~~F~~~~~~~~~~~~~ql~i~S~~~~pi~~s~l~V~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~l   89 (554)
T PF07919_consen   10 PFLEASVAFSQSEGKVGEPVQFQLSIRSNAPSPIRFSSLKVNFSGSLYPIVISHSDADASSADSSTSSGSPLSGSADLTL   89 (554)
T ss_pred             CcEEEEEEEccCCccCCCeEEEEEEEEcCCCCCEEeeEEEEEeeCCCCCceEeccccccccccCcccccccccCccceEE
Confidence            345666666543    67889999999999999999999998766433222212110 0000000  00 0112335667


Q ss_pred             CCCCeeeEEEEEeecCCCCCCCcccc-CceeeE----EEEEEEEcCCCCCe---eeeEEe-------e--------eecc
Q 013971          266 SGGGIHNYLYQLKMLSHGSSSPVKVQ-GSNVLG----KLQITWRTNLGEPG---RLQTQQ-------I--------LGTT  322 (433)
Q Consensus       266 ~~gd~~q~lf~L~p~~~~~~~~~~~~-g~~~lG----~L~I~WRs~~Ge~G---~L~Ts~-------l--------~~~~  322 (433)
                      .||....|-|.+.++........... -...+|    .+.+.|+-..+..+   ...++.       +        .+-.
T Consensus        90 ~p~~~kv~~~~~~~~~~~~~g~~~i~sv~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~I~  169 (554)
T PF07919_consen   90 SPGQTKVFSFKFVPREQDVSGELEITSVTLQLGSDKFDLTLSWSFESSSSSSSFWWWQSSDGPKSRPIRKPRDQSSIRIL  169 (554)
T ss_pred             eecceEEEEEEEeccccccCCcEEEEEEEEEEecCeEEEEEEeccccccccccccccccCCcceeeeccCCCCCCEEEEE
Confidence            78889888888887652110111111 123344    35556766522211   111111       0        0011


Q ss_pred             CccCCeEEEEEecCceEEeCCcEEEEEEEEeCCCCcccc-EEEEEE--------eCCCCCceeEEEec-------cccee
Q 013971          323 ITSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGP-FEIWLS--------QNDSDEEKVVMING-------LRIMA  386 (433)
Q Consensus       323 ~~~~dl~l~v~~~P~~v~v~~PF~v~~~v~N~s~r~~~~-l~v~l~--------~~~~~~~~~~~~~G-------~~~~~  386 (433)
                      +....+++.+...-....++|.+.+.+.|.|..+..... +.+.+-        ...+......-|.+       .....
T Consensus       170 p~pp~v~I~~~~~~~~~l~gE~~~i~i~I~n~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (554)
T PF07919_consen  170 PRPPKVSIKLPNHKPPALTGEFYPIPITISNNEDEEASGVLEVRLLHPSQLGVSSEETEDLSQVNWDSDKDDEPLFLGIP  249 (554)
T ss_pred             CCCCCeEEEeCCCCCCeEcCCEEEEEEEEEcCCCccceeEEEEEEecccccccccccCccceecccccccccchhccCcc
Confidence            334555556534456678999999999999997776551 333333        01100111122333       33567


Q ss_pred             eeeeCCCCeEEEEEEEEecccceEEeC
Q 013971          387 LAPVEAFGSTDFHLNLIATKLGVQRIT  413 (433)
Q Consensus       387 Lg~L~P~~s~~~~L~l~pl~~Glq~is  413 (433)
                      +|.|.++++.+..+.+....+|-..|.
T Consensus       250 lg~l~~~~s~~~~l~i~~~~~~~~~L~  276 (554)
T PF07919_consen  250 LGELAPGSSITVTLYIRTSRPGEYELS  276 (554)
T ss_pred             cccCCCCCcEEEEEEEEeCCceeEEEE
Confidence            899999999999999997777776665

The region in question is approximately 150 residues long.

>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known

Probab=95.14  E-value=0.072  Score=42.22  Aligned_cols=73  Identities=22%  Similarity=0.295  Sum_probs=45.4

Q ss_pred             ecceeeEEEEEEcCCCCceeeEEEEEEEeCCCceeeccCCCCCCccccCCCCeeeEEEEEEccc---ccceEEEEEEEEE
Q 013971           99 LGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKE---LGAHTLVCTALYS  175 (433)
Q Consensus        99 lGEtF~~~i~v~N~s~~~v~~V~ikvelqT~s~r~~L~~~~~~~~~~L~pg~~ld~iv~~~lke---~G~h~L~c~V~Y~  175 (433)
                      -||++...+.+.|.....+.++.+.+++  |..-. .. .....+..|.||++....+...+-+   .|.|.|.+.+.|+
T Consensus         3 ~G~~~~~~~tv~N~g~~~~~~v~~~l~~--P~GW~-~~-~~~~~~~~l~pG~s~~~~~~V~vp~~a~~G~y~v~~~a~y~   78 (78)
T PF10633_consen    3 PGETVTVTLTVTNTGTAPLTNVSLSLSL--PEGWT-VS-ASPASVPSLPPGESVTVTFTVTVPADAAPGTYTVTVTARYT   78 (78)
T ss_dssp             TTEEEEEEEEEE--SSS-BSS-EEEEE----TTSE-----EEEEE--B-TTSEEEEEEEEEE-TT--SEEEEEEEEEE--
T ss_pred             CCCEEEEEEEEEECCCCceeeEEEEEeC--CCCcc-cc-CCccccccCCCCCEEEEEEEEECCCCCCCceEEEEEEEEeC
Confidence            3999999999999988889998888877  44322 10 0112244899999888777777743   5999999999995

It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.

>PF14874 PapD-like: Flagellar-associated PapD-like

Probab=94.48  E-value=0.43  Score=39.42  Aligned_cols=73  Identities=16%  Similarity=0.299  Sum_probs=53.0

Q ss_pred             cccceeecceeeEEEEEEcCCCCceeeEEEEEEEeC-CCceeeccCCCCCCccccCCCCeeeEEEEEE-cccccceEEEE
Q 013971           93 AFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQT-DKQRILLLDTSKSPVESIRAGGRYDFIVEHD-VKELGAHTLVC  170 (433)
Q Consensus        93 sfG~iylGEtF~~~i~v~N~s~~~v~~V~ikvelqT-~s~r~~L~~~~~~~~~~L~pg~~ld~iv~~~-lke~G~h~L~c  170 (433)
                      .||++.+|++....|.+.|.+..+   .++++.... .+..+....    .-..|+||.+.+.-|.+. -++.|.+.-..
T Consensus        12 dFG~v~~g~~~~~~v~l~N~s~~p---~~f~v~~~~~~~~~~~v~~----~~g~l~PG~~~~~~V~~~~~~~~g~~~~~l   84 (102)
T PF14874_consen   12 DFGNVFVGQTYSRTVTLTNTSSIP---ARFRVRQPESLSSFFSVEP----PSGFLAPGESVELEVTFSPTKPLGDYEGSL   84 (102)
T ss_pred             EeeEEccCCEEEEEEEEEECCCCC---EEEEEEeCCcCCCCEEEEC----CCCEECCCCEEEEEEEEEeCCCCceEEEEE
Confidence            699999999999999999998664   455555444 222333321    123699999999999999 88899875544


Q ss_pred             EE
Q 013971          171 TA  172 (433)
Q Consensus       171 ~V  172 (433)
                      .|
T Consensus        85 ~i   86 (102)
T PF14874_consen   85 VI   86 (102)
T ss_pred             EE
Confidence            44

>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins

Probab=93.93  E-value=0.12  Score=42.06  Aligned_cols=77  Identities=13%  Similarity=0.204  Sum_probs=54.2

Q ss_pred             cccceeecceeeEEEEEEcCCCCceeeEEEEEEEeCCCceeeccCCCCCCccccCCCCeeeEEEEEEcccccceEEEEEE
Q 013971           93 AFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTA  172 (433)
Q Consensus        93 sfG~iylGEtF~~~i~v~N~s~~~v~~V~ikvelqT~s~r~~L~~~~~~~~~~L~pg~~ld~iv~~~lke~G~h~L~c~V  172 (433)
                      +-+.++.|+.+...+.|.|.......++.+++.+  ....+   .  ...+..|.||++....+.+...+.|.|.+.+.|
T Consensus        11 ~~~~~~~g~~~~i~~~V~N~G~~~~~~~~v~~~~--~~~~~---~--~~~i~~L~~g~~~~v~~~~~~~~~G~~~i~~~i   83 (101)
T PF07705_consen   11 SPSNVVPGEPVTITVTVKNNGTADAENVTVRLYL--DGNSV---S--TVTIPSLAPGESETVTFTWTPPSPGSYTIRVVI   83 (101)
T ss_dssp             C-SEEETTSEEEEEEEEEE-SSS-BEEEEEEEEE--TTEEE---E--EEEESEB-TTEEEEEEEEEE-SS-CEEEEEEEE
T ss_pred             CCCcccCCCEEEEEEEEEECCCCCCCCEEEEEEE--CCcee---c--cEEECCcCCCcEEEEEEEEEeCCCCeEEEEEEE
Confidence            3456789999999999999988778887776533  22222   1  123568999999999999999999999999998


Q ss_pred             EEEc
Q 013971          173 LYSD  176 (433)
Q Consensus       173 ~Y~~  176 (433)
                      .+..
T Consensus        84 D~~n   87 (101)
T PF07705_consen   84 DPDN   87 (101)
T ss_dssp             STTT
T ss_pred             eeCC
Confidence            7643

; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.

>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins

Probab=93.27  E-value=1.3  Score=41.24  Aligned_cols=81  Identities=9%  Similarity=0.035  Sum_probs=63.8

Q ss_pred             cCceEEeCCcEEEEEEEEeCCCCccccEEEEEEeCCCCCcee-EEEecccceeeeeeCCCCeEEEEEEEEecccceEEeC
Q 013971          335 VPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKV-VMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRIT  413 (433)
Q Consensus       335 ~P~~v~v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~-~~~~G~~~~~Lg~L~P~~s~~~~L~l~pl~~Glq~is  413 (433)
                      ++..+..++-++|++.|.|.-+....  .|.+..+.= .... -++.|.....+..|+||+++++.+.+.|...|...+.
T Consensus        30 l~~~~v~g~~v~V~~~iyN~G~~~A~--dV~l~D~~f-p~~~F~lvsG~~s~~~~~i~pg~~vsh~~vv~p~~~G~f~~~  106 (181)
T PF05753_consen   30 LNKYLVEGEDVTVTYTIYNVGSSAAY--DVKLTDDSF-PPEDFELVSGSLSASWERIPPGENVSHSYVVRPKKSGYFNFT  106 (181)
T ss_pred             ccccccCCcEEEEEEEEEECCCCeEE--EEEEECCCC-CccccEeccCceEEEEEEECCCCeEEEEEEEeeeeeEEEEcc
Confidence            46667789999999999999666653  455654210 1123 3688989999999999999999999999999999999


Q ss_pred             ceEEE
Q 013971          414 GITVF  418 (433)
Q Consensus       414 gI~l~  418 (433)
                      .-.+.
T Consensus       107 ~a~Vt  111 (181)
T PF05753_consen  107 PAVVT  111 (181)
T ss_pred             CEEEE
Confidence            96663

The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane

>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known

Probab=90.28  E-value=0.9  Score=35.88  Aligned_cols=59  Identities=10%  Similarity=0.021  Sum_probs=34.3

Q ss_pred             EeCCcEEEEEEEEeCCCCccccEEEEEEeCCCCCceeEEEecccceeeeeeCCCCeEEEEEEEEe
Q 013971          340 GIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIA  404 (433)
Q Consensus       340 ~v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~~~~~Lg~L~P~~s~~~~L~l~p  404 (433)
                      .-++++.+++.|+|..+..+..+.+.++.-+     ++- ...+...++.|.||++.++.+.+-|
T Consensus         2 ~~G~~~~~~~tv~N~g~~~~~~v~~~l~~P~-----GW~-~~~~~~~~~~l~pG~s~~~~~~V~v   60 (78)
T PF10633_consen    2 TPGETVTVTLTVTNTGTAPLTNVSLSLSLPE-----GWT-VSASPASVPSLPPGESVTVTFTVTV   60 (78)
T ss_dssp             -TTEEEEEEEEEE--SSS-BSS-EEEEE--T-----TSE----EEEEE--B-TTSEEEEEEEEEE
T ss_pred             CCCCEEEEEEEEEECCCCceeeEEEEEeCCC-----Ccc-ccCCccccccCCCCCEEEEEEEEEC
Confidence            3478899999999997665544777776532     333 2333446668999999999998866

It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.

>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins

Probab=87.95  E-value=3.7  Score=38.26  Aligned_cols=81  Identities=21%  Similarity=0.218  Sum_probs=62.5

Q ss_pred             eecceeeEEEEEEcCCCCceeeEEEEEEEeCCCceeeccCCC-CCCccccCCCCeeeEEEEEEcccccceEE-EEEEEEE
Q 013971           98 YLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTS-KSPVESIRAGGRYDFIVEHDVKELGAHTL-VCTALYS  175 (433)
Q Consensus        98 ylGEtF~~~i~v~N~s~~~v~~V~ikvelqT~s~r~~L~~~~-~~~~~~L~pg~~ld~iv~~~lke~G~h~L-~c~V~Y~  175 (433)
                      -.|+.....+.+-|.-+.++.||.|.-+= -++....|.... ......|.||+++..++.-+-+..|.|.+ ...|+|+
T Consensus        35 v~g~~v~V~~~iyN~G~~~A~dV~l~D~~-fp~~~F~lvsG~~s~~~~~i~pg~~vsh~~vv~p~~~G~f~~~~a~VtY~  113 (181)
T PF05753_consen   35 VEGEDVTVTYTIYNVGSSAAYDVKLTDDS-FPPEDFELVSGSLSASWERIPPGENVSHSYVVRPKKSGYFNFTPAVVTYR  113 (181)
T ss_pred             cCCcEEEEEEEEEECCCCeEEEEEEECCC-CCccccEeccCceEEEEEEECCCCeEEEEEEEeeeeeEEEEccCEEEEEE
Confidence            45999999999999999999999887621 133445553221 12356899999999999999999999988 6779998


Q ss_pred             cCCC
Q 013971          176 DGEG  179 (433)
Q Consensus       176 ~~~g  179 (433)
                      ...|
T Consensus       114 ~~~~  117 (181)
T PF05753_consen  114 DSEG  117 (181)
T ss_pred             CCCC
Confidence            8765

The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane

>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function

Probab=87.41  E-value=4  Score=36.19  Aligned_cols=93  Identities=14%  Similarity=0.189  Sum_probs=68.4

Q ss_pred             cceeecc---eeeEEEEEEcCCCCceeeEEEEEEEeCCCceeeccCCCCCCccccCCCCeeeEEEEEE--cccccceEEE
Q 013971           95 GAIYLGE---TFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHD--VKELGAHTLV  169 (433)
Q Consensus        95 G~iylGE---tF~~~i~v~N~s~~~v~~V~ikvelqT~s~r~~L~~~~~~~~~~L~pg~~ld~iv~~~--lke~G~h~L~  169 (433)
                      +++-+|+   .....+.+.|....-+.++.+++++...++.-.+...... ...++|+..+++-|..+  -=..|.|+|.
T Consensus        33 ~~v~~~~~n~~~~i~~~l~N~~~~~l~~~~v~a~V~~~~~~k~~~~~~~~-~~~mAPNS~f~~~i~~~~~~lk~G~Y~l~  111 (140)
T PF11797_consen   33 GKVKPGQINGRNVIQANLQNPQPAILKKLTVDAKVTKKGSKKVLYTFKKE-NMQMAPNSNFNFPIPLGGKKLKPGKYTLK  111 (140)
T ss_pred             eeeeeeEECCeeEEEEEEECCCchhhcCcEEEEEEEECCCCeEEEEeecc-CCEECCCCeEEeEecCCCcCccCCEEEEE
Confidence            4444444   5667788899999999999999999999876555432222 33799999999988884  4566999999


Q ss_pred             EEEEEEcCCCceeecCeeEEEE
Q 013971          170 CTALYSDGEGERKYLPQFFKFI  191 (433)
Q Consensus       170 c~V~Y~~~~ge~~~frK~ykF~  191 (433)
                      .++.+.   ++...|.|-|+..
T Consensus       112 ~~~~~~---~~~W~f~k~F~It  130 (140)
T PF11797_consen  112 ITAKSG---KKTWTFTKDFTIT  130 (140)
T ss_pred             EEEEcC---CcEEEEEEEEEEC
Confidence            998764   3356676666543

>PF00207 A2M: Alpha-2-macroglobulin family; InterPro: IPR001599 This entry contains serum complement C3 and C4 precursors and alpha-macrogrobulins

Probab=86.00  E-value=4.1  Score=33.16  Aligned_cols=42  Identities=19%  Similarity=0.267  Sum_probs=30.0

Q ss_pred             CccCCeEEEEEecCceEEeCCcEEEEEEEEeCCCCccccEEEEE
Q 013971          323 ITSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWL  366 (433)
Q Consensus       323 ~~~~dl~l~v~~~P~~v~v~~PF~v~~~v~N~s~r~~~~l~v~l  366 (433)
                      ...+++.+. .++|..++.++-+.+.+.|.|+.++.++ +.|.|
T Consensus        51 ~v~~p~~i~-~~lP~~l~~GD~~~i~v~v~N~~~~~~~-v~V~l   92 (92)
T PF00207_consen   51 TVFKPFFIQ-LNLPRSLRRGDQIQIPVTVFNYTDKDQE-VTVTL   92 (92)
T ss_dssp             EEB-SEEEE-EE--SEEETTSEEEEEEEEEE-SSS-EE-EEEEE
T ss_pred             EEEeeEEEE-cCCCcEEecCCEEEEEEEEEeCCCCCEE-EEEEC
Confidence            345566555 5899999999999999999999999887 66654

The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0004866 endopeptidase inhibitor activity; PDB: 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 2PN5_A 3FRP_G 3HRZ_B ....

>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain

Probab=85.99  E-value=11  Score=30.97  Aligned_cols=74  Identities=14%  Similarity=0.151  Sum_probs=58.0

Q ss_pred             cceeeEEEEEEcCCCCceeeEEEEEEEeCCCceeeccCCCCCCccccCCCCeeeEEEEEEcccccceEEEEEEEEEcC
Q 013971          100 GETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTALYSDG  177 (433)
Q Consensus       100 GEtF~~~i~v~N~s~~~v~~V~ikvelqT~s~r~~L~~~~~~~~~~L~pg~~ld~iv~~~lke~G~h~L~c~V~Y~~~  177 (433)
                      +......+.+.|.+..++++..+.+.. .....+.+...+   ...|.||+.++..+.......+.-.+.+.|+|...
T Consensus        17 ~~~~~i~~~~~N~s~~~it~f~~~~av-pk~~~l~l~~~s---~~~l~p~~~i~q~~~i~~~~~~~~~~~~~vsy~~~   90 (104)
T smart00809       17 PGLIRITLTFTNKSPSPITNFSFQAAV-PKSLKLQLQPPS---SPTLPPGGQITQVLKVENPGKFPLRLRLRLSYLLG   90 (104)
T ss_pred             CCeEEEEEEEEeCCCCeeeeEEEEEEc-ccceEEEEcCCC---CCccCCCCCEEEEEEEECCCCCCEEEEEEEEEEEC
Confidence            445678888999999999999988874 334555553321   23688999999999999988888999999999975

Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. Gamma-adaptin is a subunit of the golgi adaptor. Alpha adaptin is a heterotetramer that regulates clathrin-bud formation. The carboxyl-terminal appendage of the alpha subunit regulates translocation of endocytic accessory proteins to the bud site. This Ig-fold domain is found in alpha, beta and gamma adaptins and consists of a beta-sandwich containing 7 strands in 2 beta-sheets in a greek-key topology PUBMED:10430869, PUBMED:12176391. The adaptor appendage contains an additional N-terminal strand.

>PF02883 Alpha_adaptinC2: Adaptin C-terminal domain; InterPro: IPR008152 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=85.52  E-value=18  Score=30.41  Aligned_cols=74  Identities=11%  Similarity=0.114  Sum_probs=54.1

Q ss_pred             ecceeeEEEEEEcCCCCceeeEEEEEEEeCCCceeeccCCCCCCccccCCCCeeeEEEEEEcccccce------EEEEEE
Q 013971           99 LGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAH------TLVCTA  172 (433)
Q Consensus        99 lGEtF~~~i~v~N~s~~~v~~V~ikvelqT~s~r~~L~~~~~~~~~~L~pg~~ld~iv~~~lke~G~h------~L~c~V  172 (433)
                      -+...+..+.+.|.+..+++++.+.+..- .+..+.|...   +...|.|++.++..+.... ..-..      .+.+.|
T Consensus        22 ~~~~~~i~~~f~N~s~~~it~f~~q~avp-k~~~l~l~~~---s~~~i~p~~~i~Q~~~v~~-~~~~~~~~~~l~~~~~v   96 (115)
T PF02883_consen   22 NPNQGRIKLTFGNKSSQPITNFSFQAAVP-KSFKLQLQPP---SSSTIPPGQQITQVIKVEN-SPFSEPTPKPLKPRLRV   96 (115)
T ss_dssp             ETTEEEEEEEEEE-SSS-BEEEEEEEEEB-TTSEEEEEES---S-SSB-TTTEEEEEEEEEE-SS-BSTTSSTTEEEEEE
T ss_pred             CCCEEEEEEEEEECCCCCcceEEEEEEec-cccEEEEeCC---CCCeeCCCCeEEEEEEEEE-eecccCCCCCcCeEEEE
Confidence            46677888999999999999999998776 5566666432   2336889999999999999 33233      899999


Q ss_pred             EEEcC
Q 013971          173 LYSDG  177 (433)
Q Consensus       173 ~Y~~~  177 (433)
                      +|...
T Consensus        97 sy~~~  101 (115)
T PF02883_consen   97 SYNVG  101 (115)
T ss_dssp             EEEET
T ss_pred             EEEEC
Confidence            99985

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. GGAs (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) are a family of monomeric clathrin adaptor proteins that are conserved from yeasts to humans. GGAs regulate clathrin-mediated the transport of proteins (such as mannose 6-phosphate receptors) from the TGN to endosomes and lysosomes through interactions with TGN-sorting receptors, sometimes in conjunction with AP-1 [, ]. GGAs bind cargo, membranes, clathrin and accessory factors. GGA1, GGA2 and GGA3 all contain a domain homologous to the ear domain of gamma-adaptin. GGAs are composed of a single polypeptide with four domains: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The VHS domain is responsible for endocytosis and signal transduction, recognising transmembrane cargo through the ACLL sequence in the cytoplasmic domains of sorting receptors []. The GAT domain (also found in Tom1 proteins) interacts with ARF (ADP-ribosylation factor) to regulate membrane trafficking [], and with ubiquitin for receptor sorting []. The hinge region contains a clathrin box for recognition and binding to clathrin, similar to that found in AP adaptins. The GAE domain is similar to the AP gamma-adaptin ear domain, and is responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. This entry represents a beta-sandwich structural motif found in the appendage (ear) domain of alpha-, beta- and gamma-adaptin from AP clathrin adaptor complexes, and the GAE (gamma-adaptin ear) domain of GGA adaptor proteins. These domains have an immunoglobulin-like beta-sandwich fold containing 7 or 8 strands in 2 beta-sheets in a Greek key topology [, ]. Although these domains share a similar fold, there is little sequence identity between the alpha/beta-adaptins and gamma-adaptin/GAE. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 3MNM_B 3ZY7_B 1GYU_A 1GYW_B 2A7B_A 1GYV_A 2E9G_A 1E42_B 2G30_A 2IV9_B ....

>PF14874 PapD-like: Flagellar-associated PapD-like

Probab=85.49  E-value=7  Score=32.04  Aligned_cols=66  Identities=12%  Similarity=0.126  Sum_probs=48.1

Q ss_pred             eEEeCCcEEEEEEEEeCCCCccccEEEEEEeCCCCCceeEEEecccceeeeeeCCCCeEEEEEEEE-ecccceEE
Q 013971          338 VVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLI-ATKLGVQR  411 (433)
Q Consensus       338 ~v~v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~~~~~Lg~L~P~~s~~~~L~l~-pl~~Glq~  411 (433)
                      .+.+++.....+.|+|.+..... +.+......   ...|.+.-.    =|.|.||.+.++.+.+. +-..|...
T Consensus        15 ~v~~g~~~~~~v~l~N~s~~p~~-f~v~~~~~~---~~~~~v~~~----~g~l~PG~~~~~~V~~~~~~~~g~~~   81 (102)
T PF14874_consen   15 NVFVGQTYSRTVTLTNTSSIPAR-FRVRQPESL---SSFFSVEPP----SGFLAPGESVELEVTFSPTKPLGDYE   81 (102)
T ss_pred             EEccCCEEEEEEEEEECCCCCEE-EEEEeCCcC---CCCEEEECC----CCEECCCCEEEEEEEEEeCCCCceEE
Confidence            35789999999999999999876 666553311   234544432    35799999999999999 55567654

>PF13584 BatD: Oxygen tolerance

Probab=82.30  E-value=72  Score=33.83  Aligned_cols=93  Identities=17%  Similarity=0.125  Sum_probs=58.1

Q ss_pred             CCeEEEEEecCceEEeCCcEEEEEEEEeCCCCc-cccEEEEEEeCCCCCceeEEE-ecccceeeeeeC---CCCeEEEEE
Q 013971          326 KEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKE-QGPFEIWLSQNDSDEEKVVMI-NGLRIMALAPVE---AFGSTDFHL  400 (433)
Q Consensus       326 ~dl~l~v~~~P~~v~v~~PF~v~~~v~N~s~r~-~~~l~v~l~~~~~~~~~~~~~-~G~~~~~Lg~L~---P~~s~~~~L  400 (433)
                      +++.|...--|..+++++|++++++|.-.-+-. +..-.+.+.       ++|-+ ........ ...   ..+++++.+
T Consensus       271 g~f~l~~~~~~~~~~~Ge~vt~ti~i~g~Gn~~~~~lP~l~~~-------~~~~vy~~~~~~~~-~~~~~g~~g~~~~~~  342 (484)
T PF13584_consen  271 GNFSLSQSWDPTEVKVGEPVTRTITISGEGNLPSIQLPPLNLP-------KGFRVYPPKPQEQD-KPSGGGLTGSRTFKY  342 (484)
T ss_pred             eEEEEEEEcCcccccCCCeEEEEEEEEEEcchhcccCCCCCCC-------cccEEcCCCccccc-cccCCcceEEEEEEE
Confidence            556666644477899999999999998663322 221112111       12322 22211111 111   245899999


Q ss_pred             EEEecccceEEeCceEE--EeCCCCeEE
Q 013971          401 NLIATKLGVQRITGITV--FDKLEKITY  426 (433)
Q Consensus       401 ~l~pl~~Glq~isgI~l--~D~~~~~~y  426 (433)
                      .++|...|-..||.|++  +|+.+++-.
T Consensus       343 ~~ip~~~G~~~lP~i~~~~fdp~~~~y~  370 (484)
T PF13584_consen  343 TLIPKKPGDFTLPAIRFSWFDPQTGKYE  370 (484)
T ss_pred             EEEeCCCCeEEcCCeEEEEEcCCCCeEE
Confidence            99999999999999776  798887643

>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds

Probab=81.39  E-value=2.5  Score=35.32  Aligned_cols=75  Identities=17%  Similarity=0.213  Sum_probs=48.6

Q ss_pred             cceeecceeeEEEEEEcCCCCceeeEEEEEEEeCCC--cee--eccCCCCCCccccCCCCeeeEEEEEEcccccceEEEE
Q 013971           95 GAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDK--QRI--LLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVC  170 (433)
Q Consensus        95 G~iylGEtF~~~i~v~N~s~~~v~~V~ikvelqT~s--~r~--~L~~~~~~~~~~L~pg~~ld~iv~~~lke~G~h~L~c  170 (433)
                      |.+.+|+.|.+.+.+.|.++..+++|.+....++-.  ...  .+..  .....+|.||+.....+...-++-|...+.+
T Consensus         9 ~~~~vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~~~~~~~--~~~~~~l~p~~~~~~~~~i~p~~yG~~~~l~   86 (107)
T PF00927_consen    9 GDPVVGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLTRDQFKK--EKFEVTLKPGETKSVEVTITPSQYGPKQLLV   86 (107)
T ss_dssp             SEEBTTSEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTEEEEEEE--EEEEEEE-TTEEEEEEEEE-HHSHEEECCEE
T ss_pred             CCccCCCCEEEEEEEEeCCcCccccceeEEEEEEEEECCcccccEeE--EEcceeeCCCCEEEEEEEEEceeEecchhcc
Confidence            567899999999999999999999988777555432  111  1111  1124478899988877777777777754444


Q ss_pred             E
Q 013971          171 T  171 (433)
Q Consensus       171 ~  171 (433)
                      .
T Consensus        87 ~   87 (107)
T PF00927_consen   87 D   87 (107)
T ss_dssp             E
T ss_pred             h
Confidence            4

Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	433
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.6 bits (120), Expect = 7e-07
 Identities = 72/392 (18%), Positives = 111/392 (28%), Gaps = 130/392 (33%)

Query: 115 LEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTALY 174
            + +DV        D  + +L  + +            D I+       G   L  T L 
Sbjct: 33  FDCKDV-------QDMPKSIL--SKEE----------IDHIIMSKDAVSGTLRLFWTLLS 73

Query: 175 SDGEGERKY----LPQFFKFIVSNPLSVRTKVRVVKEITFLEACIENHTKSNLYMDQVEF 230
              E  +K+    L   +KF++S P+    +   +    ++E       +  LY D   F
Sbjct: 74  KQEEMVQKFVEEVLRINYKFLMS-PIKTEQRQPSMMTRMYIE------QRDRLYNDNQVF 126

Query: 231 EPSQNWSATMLKADGPHSDYNAQSREIFKPPVLIRSGGGIHNYLYQLK---------MLS 281
                              YN  SR     P L      +   L +L+         +L 
Sbjct: 127 AK-----------------YNV-SRL---QPYL-----KLRQALLELRPAKNVLIDGVLG 160

Query: 282 HGSSSPVK--VQGSNVLGKL--QITWRTNLGEPGR----LQTQQILGTTIT--------- 324
            G +           V  K+  +I W  NL         L+  Q L   I          
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFW-LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219

Query: 325 SKEIELNVVEV-------------------------PSVVGIDKPFLLKLK--LT----N 353
           S  I+L +  +                                  F L  K  LT     
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW---NAFNLSCKILLTTRFKQ 276

Query: 354 QTDKEQGPFEIWLSQNDS------DEEKVVMIN--GLRIMALAPVEAFGSTDFHLNLIAT 405
            TD         +S +        DE K +++     R   L P E   +    L++IA 
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL-PREVLTTNPRRLSIIAE 335

Query: 406 KL--GVQRITGI--TVFDKLEKITYDSLPDLE 433
            +  G+           DKL  I   SL  LE
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 6e-04
 Identities = 50/372 (13%), Positives = 95/372 (25%), Gaps = 104/372 (27%)

Query: 6   GTHSLAFRVMRLCR-PSLHVEPPLRVDPTDLF---IGEDIFDDPIAA--SNLPPLISSDV 59
           G   +A  V   C    +  +   ++     F   +      + +      L   I  + 
Sbjct: 162 GKTWVALDV---CLSYKVQCKMDFKI-----FWLNLKNCNSPETVLEMLQKLLYQIDPNW 213

Query: 60  TTNKSSDLTYRSRFLLHDSADSIGLSGLLVLPQAFGAIYLGETFCSYISINNSSTLEVRD 119
           T+        + R  +H       L  LL                 Y     +  L + +
Sbjct: 214 TSRSDHSSNIKLR--IHSIQAE--LRRLLKSKP-------------Y----ENCLLVLLN 252

Query: 120 V----VIKA-EIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELG-AHTLVCTAL 173
           V       A  +     +ILL    K   + + A       ++H    L           
Sbjct: 253 VQNAKAWNAFNLSC---KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309

Query: 174 YSDGEGERKYLPQFFKFIVSNPLSVRTKVRVVKEITFLEACIENHTKSNLYMDQVEFEPS 233
           Y D   +   LP+       NP            ++ +   I +   +            
Sbjct: 310 YLDCRPQD--LPREVLTT--NPRR----------LSIIAESIRDGLAT-----------W 344

Query: 234 QNWSATMLKADGPHSDYNAQSREIFK-----PPVLIRSGGGIHNYLYQLKMLSHGSSSPV 288
            NW          H + +  +  I        P   R          +L +    +  P 
Sbjct: 345 DNW---------KHVNCDKLTTIIESSLNVLEPAEYR------KMFDRLSVFPPSAHIPT 389

Query: 289 KVQGSNVLGKLQITWRTNLGEPGRLQTQQILGTTITSKEIELNVVEVPSVVGI-DKPFLL 347
            +        L + W     +  +     ++        +E    E  S + I      L
Sbjct: 390 IL--------LSLIW----FDVIKSDVMVVVNKLHKYSLVEKQPKE--STISIPSIYLEL 435

Query: 348 KLKLTNQTDKEQ 359
           K+KL N+    +
Sbjct: 436 KVKLENEYALHR 447

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	433
2xzz_A	102	Protein-glutamine gamma-glutamyltransferase K; 2.3	96.79
3hrz_B	252	Cobra venom factor; serine protease, glycosilated,	96.33
1vjj_A	692	Protein-glutamine glutamyltransferase E; transglut	96.24
1ex0_A	731	Coagulation factor XIII A chain; transglutaminase,	96.21
3idu_A	127	Uncharacterized protein; all beta-protein, structu	95.27
1g0d_A	695	Protein-glutamine gamma-glutamyltransferase; tissu	93.57
2q3z_A	687	Transglutaminase 2; transglutaminase 2, tissue tra	92.82
3es6_B	118	Prolactin-inducible protein; major histocompatibil	92.54
4acq_A	1451	Alpha-2-macroglobulin; hydrolase inhibitor, protei	91.29
4fxk_B	767	Complement C4-A alpha chain; immune system, proteo	91.02
3prx_B	1642	Cobra venom factor; immune system, complement, imm	91.02
2hr0_B	915	Complement C3 alpha' chain; complement component C	90.34
2qsv_A	220	Uncharacterized protein; MCSG, structural genomics	89.99
2ys4_A	122	Hydrocephalus-inducing protein homolog; hydin, PAP	88.89
2b39_A	1661	C3; thioester, immune defense, immune system; HET:	88.83
2pn5_A	1325	TEP1R, thioester-containing protein I; FULL-length	87.45
3qbt_B	140	Inositol polyphosphate 5-phosphatase OCRL-1; prote	85.7
2xzz_A	102	Protein-glutamine gamma-glutamyltransferase K; 2.3	85.25
2l0d_A	114	Cell surface protein; structural genomics, northea	84.17
1vjj_A	692	Protein-glutamine glutamyltransferase E; transglut	83.21
1ex0_A	731	Coagulation factor XIII A chain; transglutaminase,	81.2
3cu7_A	1676	Complement C5; Mg domain, inflammation, anaphylato	81.16

>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}

Probab=96.79  E-value=0.0029  Score=52.17  Aligned_cols=72  Identities=6%  Similarity=0.138  Sum_probs=60.9

Q ss_pred             ecCceEEeCCcEEEEEEEEeCCCCccccEEEEEEeCCCCCceeEEEecccceeeeeeCCCCeEEEEEEEEecccceEEeC
Q 013971          334 EVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRIT  413 (433)
Q Consensus       334 ~~P~~v~v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~~~~~Lg~L~P~~s~~~~L~l~pl~~Glq~is  413 (433)
                      +++...++++|+.+++.++|--...+....+.++...      + ..+ ....++.+.|+++..+.+.+.|..+|-++|-
T Consensus        11 ~v~g~~~v~~~l~v~vsf~NPL~~~L~~c~~~vEG~G------L-~~~-~~~~~~~v~pg~~~~~~~~~~P~~~G~~~L~   82 (102)
T 2xzz_A           11 TLLGAAVVGQECEVQIVFKNPLPVTLTNVVFRLEGSG------L-QRP-KILNVGDIGGNETVTLRQSFVPVRPGPRQLI   82 (102)
T ss_dssp             EESSCCCSSSCEEEEEEEECCSSSCBCSEEEEEEETT------T-EEE-EEEEECCBCTTCEEEEEEEECCCSCSSCCCE
T ss_pred             EECCCcccCCeEEEEEEEECCCCCcccCEEEEEECCC------C-Ccc-eEEEcCcCCCCCEEEEEEEEecCcccceEEE
Confidence            5677778999999999999997777777888888764      3 344 5677899999999999999999999998874

>3hrz_B Cobra venom factor; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Naja kaouthia} PDB: 3frp_G* 3hs0_B*

Probab=96.33  E-value=0.029  Score=53.41  Aligned_cols=96  Identities=13%  Similarity=0.156  Sum_probs=72.2

Q ss_pred             CCCeeeeEEeeeeccCccCCeEEEEEecCceEEeCCcEEEEEEEEeCCCCccccEEEEEEeCCCCCceeEEEeccc----
Q 013971          308 GEPGRLQTQQILGTTITSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLR----  383 (433)
Q Consensus       308 Ge~G~L~Ts~l~~~~~~~~dl~l~v~~~P~~v~v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~~----  383 (433)
                      ++.|.-...  .......+++-+. .++|-.++-++-|.+.+.|.|+.++.+. +.|.|..++     +|...+..    
T Consensus        64 ~~~G~g~~~--~~~i~v~kpffv~-~~LP~sv~rGE~~~l~~~V~Ny~~~~~~-v~V~l~~~~-----~~~~~~~~~~~~  134 (252)
T 3hrz_B           64 PTKGICVAE--PYEIRVMKVFFID-LQMPYSVVKNEQVEIRAILHNYVNEDIY-VRVELLYNP-----AFCSASTKGQRY  134 (252)
T ss_dssp             TTTEEEECC--CEEEEBCCSEEEE-ECCCSCEETTCCEEEEEEEEECSSSCEE-EEEEECCCT-----TEEESCCSSCCE
T ss_pred             CCCCeeecc--ceeEEEECCEEEE-cCCCcEEeeCCEEEEEEEEEcccCceEE-EEEEEEcCC-----ceEeecCCCCce
Confidence            445654322  1234566777666 4999999999999999999999999887 888887654     56665432    


Q ss_pred             ceeeeeeCCCCeEEEEEEEEecccceEEeC
Q 013971          384 IMALAPVEAFGSTDFHLNLIATKLGVQRIT  413 (433)
Q Consensus       384 ~~~Lg~L~P~~s~~~~L~l~pl~~Glq~is  413 (433)
                      ...+ .|.++++..+.|.+.|+..|.+.|.
T Consensus       135 ~~~v-~v~a~~~~~v~f~i~p~~~G~~~i~  163 (252)
T 3hrz_B          135 RQQF-PIKALSSRAVPFVIVPLEQGLHDVE  163 (252)
T ss_dssp             EEEE-EECTTEEEEEEEEEEECSSEEEEEE
T ss_pred             EEEE-EECCCCeEEEEEEEEeccCCcEEEE
Confidence            2223 6899999999999999999987764

>1vjj_A Protein-glutamine glutamyltransferase E; transglutaminase 3, X-RAY crystallography, metalloenzyme, calcium ION; HET: GDP; 1.90A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1sgx_A* 1l9m_A 1l9n_A* 1nud_A 1nuf_A 1nug_A 1rle_A*

Probab=96.24  E-value=0.15  Score=55.04  Aligned_cols=187  Identities=11%  Similarity=0.139  Sum_probs=109.5

Q ss_pred             CeEEEEEEE---EeCCeeEEEEEEEecCcccEEEEeEEeeecCCcceeeecCCCCCCCCCccccccc-CCceEEeCCCCe
Q 013971          195 PLSVRTKVR---VVKEITFLEACIENHTKSNLYMDQVEFEPSQNWSATMLKADGPHSDYNAQSREIF-KPPVLIRSGGGI  270 (433)
Q Consensus       195 Pl~VrTK~~---~~~~~~~LEaqiqN~s~~pl~le~v~lep~~~~~~~~ln~~~~~~~~~~~~~~~~-~~~~l~l~~gd~  270 (433)
                      ++.++-|..   .+++++-|.+.+.|.|+..-.   +.+..    .+..+--   .+....   .+. ....+.++|++.
T Consensus       481 ~v~~~~~~~~~~~~G~df~v~l~~~N~s~~~~~---v~~~l----~a~~v~Y---tG~~~~---~~~~~~~~v~L~p~~~  547 (692)
T 1vjj_A          481 SIIGKLKVAGMLAVGKEVNLVLLLKNLSRDTKT---VTVNM----TAWTIIY---NGTLVH---EVWKDSATMSLDPEEE  547 (692)
T ss_dssp             SEEEEEEECSCCBTTSCEEEEEEEEECSSSCEE---EEEEE----EEEEECT---TCCEEE---EEEEEEEEEEECTTCE
T ss_pred             CeEEEEEcCCCCCCCCCEEEEEEEEECCCCCEE---EEEEE----EEEEEee---CCcccc---ceEEeeEEEEECCCce
Confidence            444544432   247899999999999986632   22221    1111100   000000   111 112455677777


Q ss_pred             eeEEEEEeecCCCCCCCccccCceeeEEEEEEEEcCCCCCeeeeEEeeeeccCccCCeEEEEEecCceEEeCCcEEEEEE
Q 013971          271 HNYLYQLKMLSHGSSSPVKVQGSNVLGKLQITWRTNLGEPGRLQTQQILGTTITSKEIELNVVEVPSVVGIDKPFLLKLK  350 (433)
Q Consensus       271 ~q~lf~L~p~~~~~~~~~~~~g~~~lG~L~I~WRs~~Ge~G~L~Ts~l~~~~~~~~dl~l~v~~~P~~v~v~~PF~v~~~  350 (433)
                      ...-..|....-..  ....+..  +=-.-+..-...++  .+..--+   .....+|.|   ++|...++++|+.+++.
T Consensus       548 ~~i~~~i~y~~Y~~--~L~d~~~--i~~~a~~~v~et~~--~~~~~di---~l~~P~l~I---~v~g~~~v~~~l~v~v~  615 (692)
T 1vjj_A          548 AEHPIKISYAQYER--YLKSDNM--IRITAVCKVPDESE--VVVERDI---ILDNPTLTL---EVLNEARVRKPVNVQML  615 (692)
T ss_dssp             EEEEEEECHHHHHT--TCCTTCE--EEEEEEEECTTSCC--EEEEEEE---ECBCCCEEE---EECSCCBTTSCEEEEEE
T ss_pred             EEEEEEECHHHHhh--hcccCCe--EEEEEEEEECCCce--EEEEEEE---EEcCCCEEE---EeCCCcccCCeEEEEEE
Confidence            77776666654111  0111111  11112233333333  2222222   234445544   46777789999999999


Q ss_pred             EEeCCCCccccEEEEEEeCCCCCceeEEEecccceeeeeeCCCCeEEEEEEEEecccceEEeC
Q 013971          351 LTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRIT  413 (433)
Q Consensus       351 v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~~~~~Lg~L~P~~s~~~~L~l~pl~~Glq~is  413 (433)
                      ++|.-...+..-.+.++...       +..+.....++.|.|+++..+.+.+.|..+|.++|-
T Consensus       616 f~NPL~~~L~~c~~~vEG~G-------L~~~~~~~~~~~v~pg~~~~~~~~~~P~~~G~r~L~  671 (692)
T 1vjj_A          616 FSNPLDEPVRDCVLMVEGSG-------LLLGNLKIDVPTLGPKERSRVRFDILPSRSGTKQLL  671 (692)
T ss_dssp             EECCSSSCBCSEEEEEECTT-------TSSSCEEEEECCBCTTCEEEEEEEECCCSCEEEEEE
T ss_pred             EECCCCCcccceEEEEECCC-------CCCCceEEEcCccCCCCEEEEEEEEEeccccceEEE
Confidence            99997777776888887653       234556678899999999999999999999999974

>1ex0_A Coagulation factor XIII A chain; transglutaminase, blood coagulation, mutant, W279F, oxyanion, transferase; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1evu_A 1fie_A 1f13_A 1ggt_A 1ggu_A 1ggy_A 1qrk_A

Probab=96.21  E-value=0.069  Score=57.88  Aligned_cols=227  Identities=13%  Similarity=0.057  Sum_probs=126.0

Q ss_pred             EEEEEcccccceEEEEEE----------EEEcCCC---ceeecCeeEEE----------Ee--ecCeEEEEEEE--EeCC
Q 013971          155 IVEHDVKELGAHTLVCTA----------LYSDGEG---ERKYLPQFFKF----------IV--SNPLSVRTKVR--VVKE  207 (433)
Q Consensus       155 iv~~~lke~G~h~L~c~V----------~Y~~~~g---e~~~frK~ykF----------~v--~~Pl~VrTK~~--~~~~  207 (433)
                      .++.+-+.+|..|.+=+|          .|.-++|   |+..|.|-.++          .-  ..++.++-|.-  .+++
T Consensus       452 ~~~~~t~~VG~~ISTKaVG~d~ReDIT~~YKypEGS~eER~~~~kA~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~iG~  531 (731)
T 1ex0_A          452 VENVDATHIGKLIVTKQIGGDGMMDITDTYKFQEGQEEERLALETALMYGAKKPLNTSRSMKSRSNVDMDFEVENAVLGK  531 (731)
T ss_dssp             EEEEECSSTTCEEEEECSSSSCEEECHHHHCCCTTSHHHHHHHHHHHTTTCBCCSCCCCC-----CEEEEEEECCCBTTC
T ss_pred             EEeeccccccceEeccCCCCCCcccccccCcCCCCCHHHHHHHHHHHhhcccccccccccccCCCCeEEEEecCCCCCCC
Confidence            466677777887777665          4444444   22233222221          00  12344444442  2367


Q ss_pred             eeEEEEEEEecCcccEEEEeEEeeecCCcceeeecCCCCCCCCCccccccc-CCceEEeCCCCeeeEEEEEeecCCCCCC
Q 013971          208 ITFLEACIENHTKSNLYMDQVEFEPSQNWSATMLKADGPHSDYNAQSREIF-KPPVLIRSGGGIHNYLYQLKMLSHGSSS  286 (433)
Q Consensus       208 ~~~LEaqiqN~s~~pl~le~v~lep~~~~~~~~ln~~~~~~~~~~~~~~~~-~~~~l~l~~gd~~q~lf~L~p~~~~~~~  286 (433)
                      ++-|.+.|.|.|...-   .+.+..    .+..+-   ..+....   .+. ..-.+.++|++....-..|....-..  
T Consensus       532 df~v~l~~~N~s~~~~---~v~~~l----~a~~v~---YtG~~~~---~~~~~~~~~~L~p~~~~~i~~~i~y~~Y~~--  596 (731)
T 1ex0_A          532 DFKLSITFRNNSHNRY---TITAYL----SANITF---YTGVPKA---EFKKETFDVTLEPLSFKKEAVLIQAGEYMG--  596 (731)
T ss_dssp             CEEEEEEEEECSSSCE---EEEEEE----EEEEEC---TTSCEEE---EEEEEEEEEEECTTEEEEEEEEECHHHHTT--
T ss_pred             CEEEEEEEEECCCCCE---EEEEEE----EEEEEe---eCCcccc---ceeEeeEEEEECCCceEEEEEEECHHHHhh--
Confidence            8999999999998762   222221    111110   0000000   011 11145567777777766676654211  


Q ss_pred             CccccCceeeEEEEEEEEcCCCCCeeeeEEeeeeccCccCCeEEEEEecCceEEeCCcEEEEEEEEeCCCCccccEEEEE
Q 013971          287 PVKVQGSNVLGKLQITWRTNLGEPGRLQTQQILGTTITSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWL  366 (433)
Q Consensus       287 ~~~~~g~~~lG~L~I~WRs~~Ge~G~L~Ts~l~~~~~~~~dl~l~v~~~P~~v~v~~PF~v~~~v~N~s~r~~~~l~v~l  366 (433)
                      ....+..  +=-.-+..-...++.-.-+ --+   .....+|.|.+   |...++++|+.+++.++|.-...+..-.+.+
T Consensus       597 ~L~d~~~--i~~~a~~~v~et~~~~~~~-~di---~l~~P~l~I~v---~g~~~v~~~l~v~vsf~NPL~~~L~~c~~~v  667 (731)
T 1ex0_A          597 QLLEQAS--LHFFVTARINETRDVLAKQ-KST---VLTIPEIIIKV---RGTQVVGSDMTVTVQFTNPLKETLRNVWVHL  667 (731)
T ss_dssp             TCCTTCE--EEEEEEEEETTTCCEEEEE-EEE---ECBCCCCEEEE---EECCBTTSCEEEEEEEECCSSSCEEEEEEEE
T ss_pred             hccCCCE--EEEEEEEEECCCCeEEEEE-EEE---EEeCCCEEEEe---CCCcccCCeEEEEEEEECCCCCcccceEEEE
Confidence            0111111  1111222333222211111 111   24445565554   4556899999999999999777777678888


Q ss_pred             EeCCCCCceeEEEecccceeeeeeCCCCeEEEEEEEEecccceEEeC
Q 013971          367 SQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRIT  413 (433)
Q Consensus       367 ~~~~~~~~~~~~~~G~~~~~Lg~L~P~~s~~~~L~l~pl~~Glq~is  413 (433)
                      +...      + ..+ ....++.|.|+++..+.+.+.|..+|.++|-
T Consensus       668 EG~G------L-~~~-~~~~~~~v~pg~~~~~~~~~~P~~~G~r~L~  706 (731)
T 1ex0_A          668 DGPG------V-TRP-MKKMFREIRPNSTVQWEEVCRPWVSGHRKLI  706 (731)
T ss_dssp             EETT------T-EEE-EEEEEEEECTTCEEEEEEEECCSSCEEEEEE
T ss_pred             ECCC------C-Cce-eeEecCccCCCCEEEEEEEEEeccccceEEE
Confidence            7753      3 344 5678999999999999999999999999974

>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A

Probab=95.27  E-value=0.16  Score=43.32  Aligned_cols=81  Identities=15%  Similarity=0.206  Sum_probs=63.0

Q ss_pred             CccCCeEEEEEecCceEEeCCcEEEEEEEEeCCCCccccEEEEEEeCCCCCceeEEEecccceeeeeeCCCCeEEEEEEE
Q 013971          323 ITSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNL  402 (433)
Q Consensus       323 ~~~~dl~l~v~~~P~~v~v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~~~~~Lg~L~P~~s~~~~L~l  402 (433)
                      ...+||.+.+ ..|+.+..+++.+++++|+|.-......+.|.+--+.      - ..+..  .+ .|.+|++.++.++.
T Consensus        14 ~~~pDL~V~i-s~P~~v~~G~~~ti~vtV~N~G~~~a~~~~V~lyvng------~-~v~t~--~v-~La~G~s~tv~f~~   82 (127)
T 3idu_A           14 FEFPDLTVEI-KGPDVVGVNKLAEYEVHVKNLGGIGVPSTKVRVYING------T-LYKNW--TV-SLGPKEEKVLTFNW   82 (127)
T ss_dssp             CSSCCEEEEE-ESCSEECTTCCEEEEEEEEECSSSCEEEEEEEEEETT------E-EEEEE--EE-EECTTCEEEEEEEE
T ss_pred             ccCCCeEEEe-cCCCcccCCCEEEEEEEEEECCCCccCCcEEEEEECC------E-EEeeE--Ee-ccCCCCeEEEEEEE
Confidence            6788888865 5899999999999999999997766666777776553      1 22322  33 48999999999999


Q ss_pred             EecccceEEeCc
Q 013971          403 IATKLGVQRITG  414 (433)
Q Consensus       403 ~pl~~Glq~isg  414 (433)
                      -|..+|-+.|..
T Consensus        83 ~~~~~G~~~v~A   94 (127)
T 3idu_A           83 TPTQEGMYRINA   94 (127)
T ss_dssp             CCSSCEEEEEEE
T ss_pred             EcCCCcEEEEEE
Confidence            998888887654

>1g0d_A Protein-glutamine gamma-glutamyltransferase; tissue transglutaminase,acyltransferase; 2.50A {Pagrus major} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4

Probab=93.57  E-value=0.16  Score=54.76  Aligned_cols=187  Identities=12%  Similarity=0.084  Sum_probs=106.5

Q ss_pred             CeEEEEEEE--EeCCeeEEEEEEEecCcccEEEEeEEeeecCCcceeeecCCCCCCCCCccccccc-CCceEEeCCCCee
Q 013971          195 PLSVRTKVR--VVKEITFLEACIENHTKSNLYMDQVEFEPSQNWSATMLKADGPHSDYNAQSREIF-KPPVLIRSGGGIH  271 (433)
Q Consensus       195 Pl~VrTK~~--~~~~~~~LEaqiqN~s~~pl~le~v~lep~~~~~~~~ln~~~~~~~~~~~~~~~~-~~~~l~l~~gd~~  271 (433)
                      ++.++-|..  .+++++-|.+.|.|.|...-   .+.+..    .+..+--.+..   ..   .+. ..-.+.++|++..
T Consensus       472 ~v~~~i~~~~~~~G~df~v~v~~~N~s~~~~---~v~~~l----~a~~v~YtG~~---~~---~~~~~~~~~~L~p~~~~  538 (695)
T 1g0d_A          472 RLQLSIKHAQPVFGTDFDVIVEVKNEGGRDA---HAQLTM----LAMAVTYNSLR---RG---ECQRKTISVTVPAHKAH  538 (695)
T ss_dssp             CEEEEEEECCCBTTCCEEEEEEEEECSSSCE---EEEEEE----EEEEECTTCBC---CC---CCCEEEEEEEECTTEEE
T ss_pred             CeEEEEEeCCCCCCCCEEEEEEEEECCCCCE---EEEEEE----EEEEEeeCCcc---cC---ceeEeeEEEEECCCceE
Confidence            444544431  15789999999999998763   222221    11111000100   00   111 1124556777777


Q ss_pred             eEEEEEeecCCCCCCCccccCceeeEEEEEEEEcCCCCCeeeeEEeeeeccCccCCeEEEEEecCceEEeCCcEEEEEEE
Q 013971          272 NYLYQLKMLSHGSSSPVKVQGSNVLGKLQITWRTNLGEPGRLQTQQILGTTITSKEIELNVVEVPSVVGIDKPFLLKLKL  351 (433)
Q Consensus       272 q~lf~L~p~~~~~~~~~~~~g~~~lG~L~I~WRs~~Ge~G~L~Ts~l~~~~~~~~dl~l~v~~~P~~v~v~~PF~v~~~v  351 (433)
                      ..-..|....-..  ....+...   ++...  ..-.|.+.--..+ .--.....+|.   ++++...++++|+.+++.+
T Consensus       539 ~v~~~i~y~~Y~~--~L~d~~~i---~~~a~--~~v~et~~~~~~~-~di~l~~P~l~---I~v~g~~~v~~~l~a~vsf  607 (695)
T 1g0d_A          539 KEVMRLHYDDYVR--CVSEHHLI---RVKAL--LDAPGENGPIMTV-ANIPLSTPELL---VQVPGKAVVWEPLTAYVSF  607 (695)
T ss_dssp             EEEEEECHHHHTT--TCCTTCEE---EEEEE--EECCC---EEEEE-EEEECBCCCCE---EECCSCEETTCCEEEEEEE
T ss_pred             EEEEEECHHHHhh--hcccCCeE---EEEEE--EEECCCCeEEEEE-EEEEEcCCCEE---EEeCCCcccCCeEEEEEEE
Confidence            7776776654211  01111111   11100  1111222211111 00123444554   3578888999999999999


Q ss_pred             EeCCCCccccEEEEEEeCCCCCceeEEEecccceee-eeeCCCCeEEEEEEEEecccceEEeC
Q 013971          352 TNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMAL-APVEAFGSTDFHLNLIATKLGVQRIT  413 (433)
Q Consensus       352 ~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~~~~~L-g~L~P~~s~~~~L~l~pl~~Glq~is  413 (433)
                      +|.-...+..-.+.++...      + ..+ ....+ +.|.|+++..+.+.+.|..+|.++|-
T Consensus       608 ~NPL~~~L~~c~~~vEG~G------L-~~~-~~~~~~~~v~Pg~~~~~~~~~~P~~~G~r~L~  662 (695)
T 1g0d_A          608 TNPLPVPLKGGVFTLEGAG------L-LSA-TQIHVNGAVAPSGKVSVKLSFSPMRTGVRKLL  662 (695)
T ss_dssp             ECCSSSCEESCEEEEEETT------T-EEE-EEEECSSEECTTCEEEEEEEECCSSCEEEEEE
T ss_pred             ECCCCCcccceEEEEECCC------C-Ccc-eEEecCCCcCCCCEEEEEEEEEcCCccceEEE
Confidence            9997777776788887753      3 334 56677 89999999999999999999999874

>2q3z_A Transglutaminase 2; transglutaminase 2, tissue transglutaminase, TG2, transferas; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1kv3_A 3ly6_A*

Probab=92.82  E-value=0.14  Score=55.24  Aligned_cols=178  Identities=10%  Similarity=0.031  Sum_probs=102.7

Q ss_pred             eCCeeEEEEEEEecCcccEEEEeEEeeecCCcceeeecCCCCCCCCCcccccc-cC-CceEEeCCCCeeeEEEEEeecCC
Q 013971          205 VKEITFLEACIENHTKSNLYMDQVEFEPSQNWSATMLKADGPHSDYNAQSREI-FK-PPVLIRSGGGIHNYLYQLKMLSH  282 (433)
Q Consensus       205 ~~~~~~LEaqiqN~s~~pl~le~v~lep~~~~~~~~ln~~~~~~~~~~~~~~~-~~-~~~l~l~~gd~~q~lf~L~p~~~  282 (433)
                      +++++-|.+.++|.|...-   .+.+...    +..+-   ..+....   .+ ++ .-.+.++|++....-..|....-
T Consensus       485 ~G~df~v~v~~~N~s~~~~---~v~~~l~----a~~v~---YtG~~~~---~~~~~~~~~~~l~p~~~~~v~~~i~y~~Y  551 (687)
T 2q3z_A          485 MGSDFDVFAHITNNTAEEY---VCRLLLC----ARTVS---YNGILGP---ECGTKYLLNLTLEPFSEKSVPLCILYEKY  551 (687)
T ss_dssp             TTCCEEEEEEEEECSSSCE---EEEEEEE----EEEEC---TTCCEEE---EEEEEEEEEEEECTTEEEEEEEEECHHHH
T ss_pred             CCCCEEEEEEEEECCCCCE---EEEEEEE----EEEEe---eCCcccc---eEeeeeeeEEEECCCceEEEEEEECHHHH
Confidence            3788999999999998752   2222211    11110   0000000   11 11 11345677777777767766542


Q ss_pred             CCCCCccccCceeeEEEEEEEEcCCCCCeeeeEEeeeeccCccCCeEEEEEecCceEEeCCcEEEEEEEEeCCCCccccE
Q 013971          283 GSSSPVKVQGSNVLGKLQITWRTNLGEPGRLQTQQILGTTITSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPF  362 (433)
Q Consensus       283 ~~~~~~~~~g~~~lG~L~I~WRs~~Ge~G~L~Ts~l~~~~~~~~dl~l~v~~~P~~v~v~~PF~v~~~v~N~s~r~~~~l  362 (433)
                      ..  ....+....  -.-+.+-.   |.+.--..+ .--.....+|.|.   +|...++++|+.+++.++|.-...+..-
T Consensus       552 ~~--~L~d~~~i~--~~a~~~v~---et~~~~~~~-~di~l~~P~l~I~---v~g~~~v~~~~~v~v~f~NPL~~~L~~c  620 (687)
T 2q3z_A          552 RD--CLTESNLIK--VRALLVEP---VINSYLLAE-RDLYLENPEIKIR---ILGEPKQKRKLVAEVSLQNPLPVALEGC  620 (687)
T ss_dssp             TT--TCCTTCEEE--EEEEEEET---TTTEEEEEE-EEEECBCCCCEEE---EESCCSSSSCEEEEEEEECCSSSCBCSE
T ss_pred             hh--hccCCCEEE--EEEEEEEC---CCCeEEEEE-EEEEEeCCCEEEE---eCCCcccCCeEEEEEEEECCCCCcccce
Confidence            11  111111111  11222222   222211111 0012444556554   4566688999999999999977777767


Q ss_pred             EEEEEeCCCCCceeEEEecccceee-eeeCCCCeEEEEEEEEecccceEEeC
Q 013971          363 EIWLSQNDSDEEKVVMINGLRIMAL-APVEAFGSTDFHLNLIATKLGVQRIT  413 (433)
Q Consensus       363 ~v~l~~~~~~~~~~~~~~G~~~~~L-g~L~P~~s~~~~L~l~pl~~Glq~is  413 (433)
                      .+.++...       +..+...+.+ +.|.|+++.++.+.+.|..+|.++|-
T Consensus       621 ~~~vEG~G-------L~~~~~~~~~~~~v~pg~~~~~~~~~~P~~~G~~~L~  665 (687)
T 2q3z_A          621 TFTVEGAG-------LTEEQKTVEIPDPVEAGEEVKVRMDLVPLHMGLHKLV  665 (687)
T ss_dssp             EEEEECTT-------TCSSCEEEEECSCBCTTCEEEEEEEECCCSSSCEEEE
T ss_pred             EEEEECCC-------CCCCceEEecCCCcCCCCEEEEEEEEEeccccceEEE
Confidence            88887653       2334355677 89999999999999999999999974

>3es6_B Prolactin-inducible protein; major histocompatibility complex, protein-protein complex, P inducible protein, zinc 2-glycoprotein, ZAG-PIP complex; HET: NDG NAG BMA MAN P6G; 3.23A {Homo sapiens} SCOP: b.1.18.23

Probab=92.54  E-value=0.35  Score=40.68  Aligned_cols=80  Identities=11%  Similarity=0.022  Sum_probs=57.6

Q ss_pred             cCCeEEEEEecCceEEeCCcEEEEEEEEeCCCCccccEEEEEEeCCCCCceeEEEecccceeeeeeCCCCeEEEEEEEEe
Q 013971          325 SKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIA  404 (433)
Q Consensus       325 ~~dl~l~v~~~P~~v~v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~~~~~Lg~L~P~~s~~~~L~l~p  404 (433)
                      .+++-+. .++|-.+.-++-|.+...|.|+-+..|. +.+.|..+.     .|-......... -|-++...+|.|.+.|
T Consensus         5 ~k~~~~~-l~lPysv~rgE~~~~~~~V~nyl~~~~~-v~v~L~~s~-----~~~~~~~~~~t~-Clc~~~~~t~~W~i~~   76 (118)
T 3es6_B            5 RKIIIKN-FDIPKSVRPNDEVTAVLAVQTELKECMV-VKTYLISSI-----PLQGAFNYKYTA-CLCDDNPKTFYWDFYT   76 (118)
T ss_dssp             CCCCEEC-CCCCSEECSSCCEEEEEEEEECCSSCEE-EEEEEEESS-----CCCSGGGCEEEE-EECSSSCEEEEEEECC
T ss_pred             cceEEEE-eeCCceEecCCEEEEEEEEEecccceEE-EEEEecCCc-----CEEccCCCcccE-EecCCCceEEEEEEEe
Confidence            3455444 4899999999999999999999888888 889898765     221111111222 4888999999999988


Q ss_pred             cccceEEeCc
Q 013971          405 TKLGVQRITG  414 (433)
Q Consensus       405 l~~Glq~isg  414 (433)
                      +  |-..|..
T Consensus        77 l--g~vniTv   84 (118)
T 3es6_B           77 N--RTVQIAA   84 (118)
T ss_dssp             S--SCEEEEE
T ss_pred             C--CeEEEEE
Confidence            5  6555443

>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}

Probab=91.29  E-value=2.6  Score=49.47  Aligned_cols=85  Identities=15%  Similarity=0.110  Sum_probs=67.4

Q ss_pred             ccCccCCeEEEEEecCceEEeCCcEEEEEEEEeCCCCccccEEEEEEeCCCCCceeEEEeccc--ceeeeeeCCCCeEEE
Q 013971          321 TTITSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLR--IMALAPVEAFGSTDF  398 (433)
Q Consensus       321 ~~~~~~dl~l~v~~~P~~v~v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~~--~~~Lg~L~P~~s~~~  398 (433)
                      .....+++-+. .++|-.+.-++-|.+.+.|.|+.+..+. +.|.|..++     ++.+.+..  ...+ .|.++++..+
T Consensus       762 ~v~v~kpf~v~-~~LP~sv~rGE~~~l~~~V~N~~~~~~~-v~V~l~~~~-----~~~~~~~~~~~~~v-~l~~~~~~~v  833 (1451)
T 4acq_A          762 SLRAFQPFFVE-LTMPYSVIRGEAFTLKATVLNYLPKCIR-VSVQLEASP-----AFLAVPVEKEQAPH-CICANGRQTV  833 (1451)
T ss_dssp             EECCBCSEEEE-EECCSEEESSSCEEEEEEEEECSSSCEE-EEEEECCCT-----TEEEEESCSCCCCE-EECTTEEEEE
T ss_pred             EEEEECCEEEE-ccCCceEecCCEEEEEEEEEeccCccEE-EEEEEEcCC-----CeEeecCCCCceEE-EECCCCeEEE
Confidence            34556677555 4899999999999999999999998887 888887654     56665532  3344 6899999999


Q ss_pred             EEEEEecccceEEeC
Q 013971          399 HLNLIATKLGVQRIT  413 (433)
Q Consensus       399 ~L~l~pl~~Glq~is  413 (433)
                      .|.+.|...|.+.|.
T Consensus       834 ~f~v~p~~~G~~~i~  848 (1451)
T 4acq_A          834 SWAVTPKSLGNVNFT  848 (1451)
T ss_dssp             EEEEEECSCEEEEEE
T ss_pred             EEEEEECccceEEEE
Confidence            999999999987764

>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*

Probab=91.02  E-value=0.39  Score=52.43  Aligned_cols=83  Identities=17%  Similarity=0.166  Sum_probs=66.6

Q ss_pred             CccCCeEEEEEecCceEEeCCcEEEEEEEEeCCCCccccEEEEEEeCCCCCceeEEEeccc--ceeeeeeCCCCeEEEEE
Q 013971          323 ITSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLR--IMALAPVEAFGSTDFHL  400 (433)
Q Consensus       323 ~~~~dl~l~v~~~P~~v~v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~~--~~~Lg~L~P~~s~~~~L  400 (433)
                      ...+++-+. .++|-.+..++-|.+.+.|.|+++..+. +.|.|...+     ++...+..  ...+ .|.++++..+.|
T Consensus       149 ~v~kpf~v~-~~lP~~v~~GD~~~i~~~V~N~~~~~~~-v~v~l~~~~-----~~~~~~~~~~~~~~-~v~a~~~~~v~f  220 (767)
T 4fxk_B          149 RVFREFHLH-LRLPMSVRRFEQLELRPVLYNYLDKNLT-VSVHVSPVE-----GLCLAGGGGLAQQV-LVPAGSARPVAF  220 (767)
T ss_dssp             ECCCSEEEE-CCCCSCEETTCEEEECCEEEECSSSCEE-EEEEECCCT-----TEECSSSSCCCEEE-EECSSCEEECCE
T ss_pred             EEeccEEEe-cCCCCeeccCCEEEEEEEEEECCCCCEE-EEEEEEecC-----CeEEecCCceeEEE-EEcCCCeEEEEE
Confidence            345666555 5899999999999999999999999887 888887654     56555432  3344 689999999999


Q ss_pred             EEEecccceEEeC
Q 013971          401 NLIATKLGVQRIT  413 (433)
Q Consensus       401 ~l~pl~~Glq~is  413 (433)
                      .+.|...|.+.|.
T Consensus       221 ~i~~~~~G~~~i~  233 (767)
T 4fxk_B          221 SVVPTAAAAVSLK  233 (767)
T ss_dssp             EEEECSCSEEEEE
T ss_pred             EEEECccCcEEEE
Confidence            9999999998874

>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*

Probab=91.02  E-value=1.2  Score=53.05  Aligned_cols=81  Identities=14%  Similarity=0.199  Sum_probs=64.1

Q ss_pred             cCCeEEEEEecCceEEeCCcEEEEEEEEeCCCCccccEEEEEEeCCCCCceeEEEecc----cceeeeeeCCCCeEEEEE
Q 013971          325 SKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGL----RIMALAPVEAFGSTDFHL  400 (433)
Q Consensus       325 ~~dl~l~v~~~P~~v~v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~----~~~~Lg~L~P~~s~~~~L  400 (433)
                      .+++-+. .++|-.+.-++-|.+.+.|.|+.+..+. +.|.|..++     +|...+.    ....+ .|.++++..+.|
T Consensus       811 ~kpffv~-l~LPysv~rGEq~~l~v~VfNy~~~~~~-V~V~L~~s~-----~~~~~~~~~~~~~q~v-~v~a~~~~~v~f  882 (1642)
T 3prx_B          811 MKVFFID-LQMPYSVVKNEQVEIRAILHNYVNEDIY-VRVELLYNP-----AFCSASTKGQRYRQQF-PIKALSSRAVPF  882 (1642)
T ss_dssp             CCSEEEE-CCCCSCEETTCCEEEEEEEEECSSSCEE-EEEEECCCT-----TEEESCCSSSCCEEEE-EECSSEEEEEEE
T ss_pred             ECCEEEE-ccCCCEEecCCEEEEEEEEEcCCCCcEE-EEEEEEcCC-----CeEeeccCCCcceeEE-EECCCCeEEEEE
Confidence            4444333 4889999999999999999999999887 888887654     5766653    12344 789999999999


Q ss_pred             EEEecccceEEeC
Q 013971          401 NLIATKLGVQRIT  413 (433)
Q Consensus       401 ~l~pl~~Glq~is  413 (433)
                      .+.|...|.+.|.
T Consensus       883 ~i~p~~~G~~~i~  895 (1642)
T 3prx_B          883 VIVPLEQGLHDVE  895 (1642)
T ss_dssp             EEEECSCEEEEEE
T ss_pred             EEEEeecccEEEE
Confidence            9999999988753

>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...

Probab=90.34  E-value=0.99  Score=50.42  Aligned_cols=83  Identities=13%  Similarity=0.163  Sum_probs=65.7

Q ss_pred             CccCCeEEEEEecCceEEeCCcEEEEEEEEeCCC-CccccEEEEEEeCCCCCceeEEEecc----cceeeeeeCCCCeEE
Q 013971          323 ITSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTD-KEQGPFEIWLSQNDSDEEKVVMINGL----RIMALAPVEAFGSTD  397 (433)
Q Consensus       323 ~~~~dl~l~v~~~P~~v~v~~PF~v~~~v~N~s~-r~~~~l~v~l~~~~~~~~~~~~~~G~----~~~~Lg~L~P~~s~~  397 (433)
                      ...+++-+. .++|-.+..++-|.+.+.|.|+++ ..+. +.|.|..++     ++...|.    ....+ .|.++++..
T Consensus        76 ~v~kp~~v~-~~LP~~v~~GD~~~i~~~v~N~~~~~~~~-v~v~l~~~~-----~~~~~~~~~~~~~~~v-~l~~~~~~~  147 (915)
T 2hr0_B           76 TVMQDFFID-LRLPYSVVRNEQVEIRAVLYNYRQNQELK-VRVELLHNP-----AFCSLATTKRRHQQTV-TIPPKSSLS  147 (915)
T ss_dssp             EECCSSEEE-EECCSEEETTCCEEEEEEEEECCSSCCEE-EEEEECCCT-----TEECSCCSSSCEEEEE-EECTTEEEE
T ss_pred             EEeccEEEE-ccCCCEEecCcEEEEEEEEEcCCCCeeEE-EEEEEecCC-----ceEeecCCCCcceeEE-EECCCCeEE
Confidence            445666555 589999999999999999999999 8887 888887654     5655543    12344 789999999


Q ss_pred             EEEEEEecccceEEeC
Q 013971          398 FHLNLIATKLGVQRIT  413 (433)
Q Consensus       398 ~~L~l~pl~~Glq~is  413 (433)
                      +.|.+.|...|.+.|.
T Consensus       148 v~f~i~~~~~G~~~i~  163 (915)
T 2hr0_B          148 VPYVIVPLKTGLQEVE  163 (915)
T ss_dssp             EEEEEEECSCEEEEEE
T ss_pred             EEEEEEECccceEEEE
Confidence            9999999999988763

>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}

Probab=89.99  E-value=9.9  Score=34.69  Aligned_cols=127  Identities=13%  Similarity=0.095  Sum_probs=81.7

Q ss_pred             cccceeecceeeEEEEEEcCCCCceeeEEEEEEEeCCCceeeccCCCCCCccccCCCCeeeEEEEEEcccc---cceEEE
Q 013971           93 AFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKEL---GAHTLV  169 (433)
Q Consensus        93 sfG~iylGEtF~~~i~v~N~s~~~v~~V~ikvelqT~s~r~~L~~~~~~~~~~L~pg~~ld~iv~~~lke~---G~h~L~  169 (433)
                      .||.+-.|+.=...+.+.|.++.+++=..++    .++- ... .   ..-..|+||+.-+..|.|+-+..   |.+.=.
T Consensus        11 dFg~v~~g~~~~~~~~i~N~g~~pl~i~~~~----~p~~-~~~-~---~~~~~I~PG~~g~I~vt~~~~~~~~~G~~~~~   81 (220)
T 2qsv_A           11 LFPISMPEDEGVVRLVVNNTDESDLQVAVVS----LPSF-VSL-D---DRAFRLQAREPRELNLSLAVPRNMPPGMKDEP   81 (220)
T ss_dssp             ECCSBCTTCCCEEEEEEEECSSSCEEEEEEE----CCTT-EEC-S---CCEEEECSSSCEEEEEEECCCTTCCSEEEEEE
T ss_pred             EcccccCCCcceEEEEEEeCCCCceEEEecc----CCCc-eEe-e---eCcceeCCCCceEEEEEEcchhcccCCceeeE
Confidence            6999999999999999999998876544332    2221 111 1   12347999999999999999886   666555


Q ss_pred             EEEEEEcC-CCceeecCee-EEEEeec-----------CeEEE--EEEEEe-CCeeEEEEEEEecCcccEEEEeEE
Q 013971          170 CTALYSDG-EGERKYLPQF-FKFIVSN-----------PLSVR--TKVRVV-KEITFLEACIENHTKSNLYMDQVE  229 (433)
Q Consensus       170 c~V~Y~~~-~ge~~~frK~-ykF~v~~-----------Pl~Vr--TK~~~~-~~~~~LEaqiqN~s~~pl~le~v~  229 (433)
                      ++|...++ +++...- .+ .+..+..           -+.+.  ..|..+ ++..--+..++|.+..||.|.++.
T Consensus        82 i~v~~~~~~~~~~~~~-~i~v~g~v~p~~~~~~~~~~~~i~~~~~~dfG~i~g~~~~~~f~i~N~G~~pL~I~~v~  156 (220)
T 2qsv_A           82 LVLEVTSPETGKKAVD-SVMVSLPLVDNFPALTAAQTGVMELSTYLDMGQLDGETTKAAIEIRNVGAGPLRLHSVT  156 (220)
T ss_dssp             EEEEEECTTTCCEEEE-EEEEEEEECCCGGGCCGGGCCCEECCCEEEEEECTTSCEEEEEEEEECSSSCEEEEEEE
T ss_pred             EEEEEEcCCCCccccc-EEEEEEEEcccchhhhhccCCEEEEEeEEeeeccCCCeEEEEEEEEECCCCCEEEEEEE
Confidence            66666542 2221111 22 2222221           13443  122333 455667899999999999999885

>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.89  E-value=2.5  Score=34.99  Aligned_cols=86  Identities=15%  Similarity=0.244  Sum_probs=64.1

Q ss_pred             CCccCCCCcccccc--cccceeecceeeEEEEEEcCCCCceeeEEEEEEEeCCCceeeccCCCCCCccccCCCCeeeEEE
Q 013971           79 ADSIGLSGLLVLPQ--AFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIV  156 (433)
Q Consensus        79 ~~~~~~~~~L~LP~--sfG~iylGEtF~~~i~v~N~s~~~v~~V~ikvelqT~s~r~~L~~~~~~~~~~L~pg~~ld~iv  156 (433)
                      ..+.+.-+.|.+|+  .||..-+|++=...|.+.|.+..+++   ++  +..++ ......    ....|.||+..+..|
T Consensus        17 l~a~~~~~~l~~p~~l~fg~~~v~~~~~~~~~l~N~g~~~~~---f~--~~~~~-~F~i~P----~~g~L~pg~~~~i~V   86 (122)
T 2ys4_A           17 IKARGARAILDFPDKLNFSTCPVKYSTQKILLVRNIGNKNAV---FH--IKTCR-PFSIEP----AIGTLNVGESMQLEV   86 (122)
T ss_dssp             SCCCSCCCCCCCCSEECCCSEESSSCEEEEEEEECCSSSCEE---EE--EECCT-TEEEES----SEEEECTTCEEEEEE
T ss_pred             EEEEcCCcEECCCCeeecCCeecCCeEEEEEEEEECCCCCEE---EE--EecCC-CeEEEC----CcCEECCCCEEEEEE
Confidence            44556667788885  89999999999999999999865432   32  33322 333322    135799999999999


Q ss_pred             EEEcccccceEEEEEEEE
Q 013971          157 EHDVKELGAHTLVCTALY  174 (433)
Q Consensus       157 ~~~lke~G~h~L~c~V~Y  174 (433)
                      .|.=++.|.|.-...+.|
T Consensus        87 ~F~P~~~g~~~~~l~v~~  104 (122)
T 2ys4_A           87 EFEPQSVGDHSGRLIVCY  104 (122)
T ss_dssp             EECCSSSBCCCCBCEEEE
T ss_pred             EEEcCCCccEEEEEEEEE
Confidence            999999999976666666

>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}

Probab=88.83  E-value=1.6  Score=51.97  Aligned_cols=82  Identities=12%  Similarity=0.174  Sum_probs=64.5

Q ss_pred             ccCCeEEEEEecCceEEeCCcEEEEEEEEeCCC-CccccEEEEEEeCCCCCceeEEEecc----cceeeeeeCCCCeEEE
Q 013971          324 TSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTD-KEQGPFEIWLSQNDSDEEKVVMINGL----RIMALAPVEAFGSTDF  398 (433)
Q Consensus       324 ~~~dl~l~v~~~P~~v~v~~PF~v~~~v~N~s~-r~~~~l~v~l~~~~~~~~~~~~~~G~----~~~~Lg~L~P~~s~~~  398 (433)
                      ..+++-+. .++|-.+..++-|.+.+.|.|+++ ..+. +.|.|..++     ++...+.    ....+ .|.++++..+
T Consensus       824 v~kpf~v~-~~LP~sv~~GD~~~i~~~V~N~~~~~~~~-v~v~l~~~~-----~~~~~~~~~~~~~~~v-~v~a~~~~~v  895 (1661)
T 2b39_A          824 VMQDFFID-LRLPYSVVRNEQVEIRAILYNYREAENLK-VRVELLYNP-----AFCSLATAKKRHQQTI-TIPARSSVAV  895 (1661)
T ss_dssp             CCCSEEEE-EECCSCEESSCEEEEEEEEEECCTTCCEE-EEEEECCCT-----TEECSSCSSCCCEEEE-EECTTCEEEE
T ss_pred             EEeeEEEE-ecCCcEEEeCCEEEEEEEEEcCCCCccEE-EEEEEcCCC-----CeEeecCCCCcceEEE-EECCCCcEEE
Confidence            34555444 489999999999999999999999 8887 888887654     5655543    23444 7899999999


Q ss_pred             EEEEEecccceEEeC
Q 013971          399 HLNLIATKLGVQRIT  413 (433)
Q Consensus       399 ~L~l~pl~~Glq~is  413 (433)
                      .|.+.|...|.+.|.
T Consensus       896 ~f~i~p~~~G~~~i~  910 (1661)
T 2b39_A          896 PYVIVPLKIGLHEVE  910 (1661)
T ss_dssp             EEEEEECSCEEEEEE
T ss_pred             EEEEEEcccCeEEEE
Confidence            999999999988763

>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}

Probab=87.45  E-value=2.3  Score=49.26  Aligned_cols=81  Identities=15%  Similarity=0.129  Sum_probs=63.2

Q ss_pred             cCCeEEEEEecCceEEeCCcEEEEEEEEeCCCCccccEEEEEEeCCCCCceeEEEeccc------ceeeeeeCCCCeEEE
Q 013971          325 SKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLR------IMALAPVEAFGSTDF  398 (433)
Q Consensus       325 ~~dl~l~v~~~P~~v~v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~~------~~~Lg~L~P~~s~~~  398 (433)
                      .+++-+. .++|-.+..++-|.+.+.|.|+++..+. +.|.|..++    +.+-++|..      ...+ .|.++++..+
T Consensus       663 ~kp~~v~-~~lP~~v~~Gd~~~l~~~v~N~~~~~~~-v~v~l~~~~----~~~~~~~~~~~~~~~~~~v-~v~~~~~~~v  735 (1325)
T 2pn5_A          663 VQPFYIV-ENLPYSIKRGEAVVLQFTLFNNLGAEYI-ADVTLYNVA----NQTEFVGRPNTDLSYTKSV-SVPPKVGVPI  735 (1325)
T ss_dssp             CCSEEEE-EECCSEEETTCEEEEEEEEEECSSSCEE-EEEEEECGG----GCEEETTSCTTCCEEEEEE-EECTTCCEEE
T ss_pred             eeeEEEE-cCCCcEEEcCCEEEEEEEEEeCCCCcEE-EEEEEeecC----CceEEeccCCCCCcceEEE-EECCCCeEEE
Confidence            4455444 4789999999999999999999999887 888886543    245565542      2334 6899999999


Q ss_pred             EEEEEecccceEEe
Q 013971          399 HLNLIATKLGVQRI  412 (433)
Q Consensus       399 ~L~l~pl~~Glq~i  412 (433)
                      .|.+.|...|...|
T Consensus       736 ~f~i~~~~~G~~~i  749 (1325)
T 2pn5_A          736 SFLIKARKLGEMAV  749 (1325)
T ss_dssp             EEEEEECSSEEEEE
T ss_pred             EEEEEEcccceEEE
Confidence            99999999997766

>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}

Probab=85.70  E-value=1.9  Score=37.01  Aligned_cols=83  Identities=18%  Similarity=0.149  Sum_probs=62.0

Q ss_pred             EEeCCcEEEEEEEEeCCCCccccEEEEEEeCCCC-CceeEEEecccceeeeeeCCCCeEEEEEEEEe-------cccceE
Q 013971          339 VGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSD-EEKVVMINGLRIMALAPVEAFGSTDFHLNLIA-------TKLGVQ  410 (433)
Q Consensus       339 v~v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~-~~~~~~~~G~~~~~Lg~L~P~~s~~~~L~l~p-------l~~Glq  410 (433)
                      +...++-+-++.|+|.+.-.+. +.+....++.. ..+.+-+. +   .=|.|+|+++..+.+++.-       +..|-+
T Consensus        39 v~~~~~~~~~l~I~Ntg~vpa~-F~f~~~~~~~~~~~~wl~v~-P---~~G~L~Pge~~~I~v~~~v~~~~~~~ln~g~~  113 (140)
T 3qbt_B           39 VKFRQLQKEKFQISNNGQVPCH-FSFIPKLNDSQYCKPWLRAE-P---FEGYLEPNETVDISLDVYVSKDSVTILNSGED  113 (140)
T ss_dssp             ECBTCCEEEEEEEEECSSSCEE-EEEECCTTCSSSSCTTEEEE-S---CEEEECTTCEEEEEEEECBCHHHHHHHHHSSS
T ss_pred             ceeeeeeeeEEEEEcCCccceE-EEEecCCCchhhhhHhhhcC-C---cccccCCCCeeEEEEEEEEccCcccccccchh
Confidence            5788888999999999888877 66654332211 12345554 3   2568999999999999983       567778


Q ss_pred             EeCceEEEeCCCCeEE
Q 013971          411 RITGITVFDKLEKITY  426 (433)
Q Consensus       411 ~isgI~l~D~~~~~~y  426 (433)
                      ++..+-+.-...+|.|
T Consensus       114 ~l~diLvL~Ve~G~d~  129 (140)
T 3qbt_B          114 KIEDILVLHLDRGKDY  129 (140)
T ss_dssp             CSCEEEEEEETTSCEE
T ss_pred             hhheeEEEEeecCCcE
Confidence            8999989888888887

>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}

Probab=85.25  E-value=2.7  Score=34.16  Aligned_cols=73  Identities=18%  Similarity=0.179  Sum_probs=58.4

Q ss_pred             cceeecceeeEEEEEEcCCCCceeeEEEEEEEeCCCceeeccCCCCCCccccCCCCeeeEEEEEEcccccceEEEEEEE
Q 013971           95 GAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTAL  173 (433)
Q Consensus        95 G~iylGEtF~~~i~v~N~s~~~v~~V~ikvelqT~s~r~~L~~~~~~~~~~L~pg~~ld~iv~~~lke~G~h~L~c~V~  173 (433)
                      |.+-+|+.+.+.+++.|--+.+++++.+.+|=--=......      ...++.||++....+.+-=+..|.+.|.+..+
T Consensus        14 g~~~v~~~l~v~vsf~NPL~~~L~~c~~~vEG~GL~~~~~~------~~~~v~pg~~~~~~~~~~P~~~G~~~L~a~f~   86 (102)
T 2xzz_A           14 GAAVVGQECEVQIVFKNPLPVTLTNVVFRLEGSGLQRPKIL------NVGDIGGNETVTLRQSFVPVRPGPRQLIASLD   86 (102)
T ss_dssp             SCCCSSSCEEEEEEEECCSSSCBCSEEEEEEETTTEEEEEE------EECCBCTTCEEEEEEEECCCSCSSCCCEEEEE
T ss_pred             CCcccCCeEEEEEEEECCCCCcccCEEEEEECCCCCcceEE------EcCcCCCCCEEEEEEEEecCcccceEEEEEEE
Confidence            66788999999999999999999999999874322222111      13468999999999999999999999988754

>2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans}

Probab=84.17  E-value=10  Score=31.39  Aligned_cols=79  Identities=14%  Similarity=0.205  Sum_probs=57.0

Q ss_pred             CCeEEEEEecCceEEeCCcEEEEEEEEeCCCCccccEEEEEEeCCCCCceeEEEecccceeeeeeCCCCeEEEEEEEEec
Q 013971          326 KEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIAT  405 (433)
Q Consensus       326 ~dl~l~v~~~P~~v~v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~~~~~Lg~L~P~~s~~~~L~l~pl  405 (433)
                      .||.+.-. .|+.+..+++.+|...|+|.-......+.|.+..+.      -.+.+   ..++.|.+|.+.++.++.-|.
T Consensus         3 PDL~vt~i-tP~~~~~~~~~ti~atVkN~G~~~a~~~~V~ly~~g------~~v~t---~~v~~LaaG~s~tv~~~w~~~   72 (114)
T 2l0d_A            3 PDLVPVSL-TPVTVVPNTVNTMTATIENQGNKDSTSFNVSLLVDG------IVVDT---QTVTSLESENSTNVDFHWTLD   72 (114)
T ss_dssp             CCEEEEEE-ECSEECTTSEEEEEEEEEECSSSCBCCEEEEEEETT------EEEEE---EEESCBCBTCEEEEEEEEECC
T ss_pred             CCcEEEec-cCCCcCCCCeEEEEEEEEECCCCCCCCEEEEEEECC------EEEcc---eecccccCCCEEEEEEEEeec
Confidence            45554444 488899999999999999996665555667665442      22222   246679999999999988887


Q ss_pred             -ccceEEeCc
Q 013971          406 -KLGVQRITG  414 (433)
Q Consensus       406 -~~Glq~isg  414 (433)
                       ..|-+.|.-
T Consensus        73 ~~~G~ytl~a   82 (114)
T 2l0d_A           73 GTANSYTLTV   82 (114)
T ss_dssp             CSCSEEEEEE
T ss_pred             CcCceEEEEE
Confidence             488888753

>1vjj_A Protein-glutamine glutamyltransferase E; transglutaminase 3, X-RAY crystallography, metalloenzyme, calcium ION; HET: GDP; 1.90A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1sgx_A* 1l9m_A 1l9n_A* 1nud_A 1nuf_A 1nug_A 1rle_A*

Probab=83.21  E-value=2.5  Score=45.65  Aligned_cols=72  Identities=13%  Similarity=0.192  Sum_probs=53.7

Q ss_pred             cCCeEEEEEecCceEEeCCcEEEEEEEEeCCCCccccEEEEEEeCCCCCceeEEEecccceeee------eeCCCCeEEE
Q 013971          325 SKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALA------PVEAFGSTDF  398 (433)
Q Consensus       325 ~~dl~l~v~~~P~~v~v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~~~~~Lg------~L~P~~s~~~  398 (433)
                      ..++.+.+ ++++.+.++++|.+.+.++|.|++... +.+.+..      ..+.|+|.....+.      .|.|+++.++
T Consensus       479 ~~~v~~~~-~~~~~~~~G~df~v~l~~~N~s~~~~~-v~~~l~a------~~v~YtG~~~~~~~~~~~~v~L~p~~~~~i  550 (692)
T 1vjj_A          479 EPSIIGKL-KVAGMLAVGKEVNLVLLLKNLSRDTKT-VTVNMTA------WTIIYNGTLVHEVWKDSATMSLDPEEEAEH  550 (692)
T ss_dssp             CCSEEEEE-EECSCCBTTSCEEEEEEEEECSSSCEE-EEEEEEE------EEECTTCCEEEEEEEEEEEEEECTTCEEEE
T ss_pred             CCCeEEEE-EcCCCCCCCCCEEEEEEEEECCCCCEE-EEEEEEE------EEEeeCCccccceEEeeEEEEECCCceEEE
Confidence            44566665 577788899999999999999888765 6676654      35777776554433      5889999999


Q ss_pred             EEEEEe
Q 013971          399 HLNLIA  404 (433)
Q Consensus       399 ~L~l~p  404 (433)
                      .+.+-+
T Consensus       551 ~~~i~y  556 (692)
T 1vjj_A          551 PIKISY  556 (692)
T ss_dssp             EEEECH
T ss_pred             EEEECH
Confidence            987654

>1ex0_A Coagulation factor XIII A chain; transglutaminase, blood coagulation, mutant, W279F, oxyanion, transferase; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1evu_A 1fie_A 1f13_A 1ggt_A 1ggu_A 1ggy_A 1qrk_A

Probab=81.20  E-value=2.7  Score=45.52  Aligned_cols=70  Identities=14%  Similarity=0.274  Sum_probs=51.9

Q ss_pred             CCeEEEEEecCceEEeCCcEEEEEEEEeCCCCccccEEEEEEeCCCCCceeEEEecccceeee------eeCCCCeEEEE
Q 013971          326 KEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALA------PVEAFGSTDFH  399 (433)
Q Consensus       326 ~dl~l~v~~~P~~v~v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~~~~~Lg------~L~P~~s~~~~  399 (433)
                      .++.+.+. . +.+.++++|.+.+.++|.|++... +.+.+..      ..+.|+|.....+.      .|.|+++.++.
T Consensus       516 ~~v~~~i~-~-~~~~iG~df~v~l~~~N~s~~~~~-v~~~l~a------~~v~YtG~~~~~~~~~~~~~~L~p~~~~~i~  586 (731)
T 1ex0_A          516 SNVDMDFE-V-ENAVLGKDFKLSITFRNNSHNRYT-ITAYLSA------NITFYTGVPKAEFKKETFDVTLEPLSFKKEA  586 (731)
T ss_dssp             -CEEEEEE-E-CCCBTTCCEEEEEEEEECSSSCEE-EEEEEEE------EEECTTSCEEEEEEEEEEEEEECTTEEEEEE
T ss_pred             CCeEEEEe-c-CCCCCCCCEEEEEEEEECCCCCEE-EEEEEEE------EEEeeCCccccceeEeeEEEEECCCceEEEE
Confidence            45777765 4 778899999999999999888765 6666654      35777776444332      58999999999


Q ss_pred             EEEEe
Q 013971          400 LNLIA  404 (433)
Q Consensus       400 L~l~p  404 (433)
                      +.+-+
T Consensus       587 ~~i~y  591 (731)
T 1ex0_A          587 VLIQA  591 (731)
T ss_dssp             EEECH
T ss_pred             EEECH
Confidence            87754

>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A

Probab=81.16  E-value=1.7  Score=51.76  Aligned_cols=81  Identities=17%  Similarity=0.193  Sum_probs=62.9

Q ss_pred             ccCCeEEEEEecCceEEeCCcEEEEEEEEeCCCCccccEEEEEEeCCCCCceeEEEeccc-----------ceeeeeeCC
Q 013971          324 TSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLR-----------IMALAPVEA  392 (433)
Q Consensus       324 ~~~dl~l~v~~~P~~v~v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~~-----------~~~Lg~L~P  392 (433)
                      ..+++-+. .++|-.+..++-|.+.+.|.|+++..+. +.|.|..++     ++...|..           ...+ .|.+
T Consensus       819 v~kpf~v~-~~LP~~v~~GD~~~i~~~V~N~~~~~~~-v~v~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~v-~v~a  890 (1676)
T 3cu7_A          819 VFKDVFLE-MNIPYSVVRGEQIQLKGTVYNYRTSGMQ-FCVKMSAVE-----GICTSESPVIDHQGTKSSKCVRQ-KVEG  890 (1676)
T ss_dssp             ECCSEEEE-EECCSCEETTCCEEEEEEEEECSSSCBC-CCCEECCCT-----TEECSSCC----------CCCCC-CBCT
T ss_pred             EEeeEEEE-ccCCcEEEECcEEEEEEEEEcCCCCcEE-EEEEEecCC-----CeEEeccccccccccccceeEEE-EECC
Confidence            34555444 4889999999999999999999999888 888887653     56555432           2334 6799


Q ss_pred             CCeEEEEEEEEecccceEEe
Q 013971          393 FGSTDFHLNLIATKLGVQRI  412 (433)
Q Consensus       393 ~~s~~~~L~l~pl~~Glq~i  412 (433)
                      +++..+.|.+.|...|.+.|
T Consensus       891 ~~~~~v~f~i~p~~~G~~~i  910 (1676)
T 3cu7_A          891 SSSHLVTFTVLPLEIGLHNI  910 (1676)
T ss_dssp             TEEEECCEEEEECSSSCCCE
T ss_pred             CCeEEEEEEEEEcccCcEEE
Confidence            99999999999999997755

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	433
d1vjja3	99	Transglutaminase, two C-terminal domains {Human (H	97.01
d1ex0a3	100	Transglutaminase, two C-terminal domains {Human (H	96.89
d1g0da3	101	Transglutaminase, two C-terminal domains {Red sea	96.82
d2q3za3	98	Transglutaminase, two C-terminal domains {Human (H	96.53
d1vjja2	115	Transglutaminase, two C-terminal domains {Human (H	96.49
d1ex0a2	112	Transglutaminase, two C-terminal domains {Human (H	96.45
d2q3za2	114	Transglutaminase, two C-terminal domains {Human (H	95.77
d1g0da2	112	Transglutaminase, two C-terminal domains {Red sea	95.55
d2q3za3	98	Transglutaminase, two C-terminal domains {Human (H	95.07
d1vjja3	99	Transglutaminase, two C-terminal domains {Human (H	94.71
d3es6b1	118	Prolactin-inducible protein, PIP {Human (Homo sapi	94.57
d1g0da3	101	Transglutaminase, two C-terminal domains {Red sea	93.19
d1ex0a3	100	Transglutaminase, two C-terminal domains {Human (H	90.88

>d1vjja3 b.1.5.1 (A:594-692) Transglutaminase, two C-terminal domains {Human (Homo sapiens), TGase E3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Transglutaminase, two C-terminal domains
family: Transglutaminase, two C-terminal domains
domain: Transglutaminase, two C-terminal domains
species: Human (Homo sapiens), TGase E3 [TaxId: 9606]

Probab=97.01  E-value=0.00072  Score=53.60  Aligned_cols=75  Identities=11%  Similarity=0.257  Sum_probs=61.6

Q ss_pred             EecCceEEeCCcEEEEEEEEeCCCCccccEEEEEEeCCCCCceeEEEecccceeeeeeCCCCeEEEEEEEEecccceEEe
Q 013971          333 VEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRI  412 (433)
Q Consensus       333 ~~~P~~v~v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~~~~~Lg~L~P~~s~~~~L~l~pl~~Glq~i  412 (433)
                      +++|....+++|+.+++.++|--+..+.+-.+.++...       ++.+.+...++.+.|+++.++.+.+.|..+|.++|
T Consensus         5 I~v~~~~~v~~~~~v~vsf~NPL~~~L~~c~f~vEG~G-------L~~~~~~~~~~~v~p~~~~~~~~~~~P~~~G~~~l   77 (99)
T d1vjja3           5 LEVLNEARVRKPVNVQMLFSNPLDEPVRDCVLMVEGSG-------LLLGNLKIDVPTLGPKERSRVRFDILPSRSGTKQL   77 (99)
T ss_dssp             EEECSCCBTTSCEEEEEEEECCSSSCBCSEEEEEECTT-------TSSSCEEEEECCBCTTCEEEEEEEECCCSCEEEEE
T ss_pred             EEeCCCcCcCCeEEEEEEEECCCCCchhCEEEEEEeCC-------CCCccEEEecCccCCCCEEEEEEEEEcCCcccEEE
Confidence            36788889999999999999997777776888887653       12334455788899999999999999999999997


Q ss_pred             Cc
Q 013971          413 TG  414 (433)
Q Consensus       413 sg  414 (433)
                      -.
T Consensus        78 ~a   79 (99)
T d1vjja3          78 LA   79 (99)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>d1ex0a3 b.1.5.1 (A:628-727) Transglutaminase, two C-terminal domains {Human (Homo sapiens), blood isozyme [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Transglutaminase, two C-terminal domains
family: Transglutaminase, two C-terminal domains
domain: Transglutaminase, two C-terminal domains
species: Human (Homo sapiens), blood isozyme [TaxId: 9606]

Probab=96.89  E-value=0.0011  Score=52.49  Aligned_cols=78  Identities=10%  Similarity=0.077  Sum_probs=63.5

Q ss_pred             CCeEEEEEecCceEEeCCcEEEEEEEEeCCCCccccEEEEEEeCCCCCceeEEEecccceeeeeeCCCCeEEEEEEEEec
Q 013971          326 KEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIAT  405 (433)
Q Consensus       326 ~dl~l~v~~~P~~v~v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~~~~~Lg~L~P~~s~~~~L~l~pl  405 (433)
                      .||.+.   +|....+++|+.+++.++|--+..+.+-.+.++...      +.  ..+...++.+.|+++.++.+.+.|.
T Consensus         3 P~l~I~---v~g~~~v~~~~~v~v~F~NPL~~~L~nc~~~vEG~G------L~--~~~~~~~~~v~p~~~~~~~~~~~P~   71 (100)
T d1ex0a3           3 PEIIIK---VRGTQVVGSDMTVTVQFTNPLKETLRNVWVHLDGPG------VT--RPMKKMFREIRPNSTVQWEEVCRPW   71 (100)
T ss_dssp             CCCEEE---EEECCBTTSCEEEEEEEECCSSSCEEEEEEEEEETT------TE--EEEEEEEEEECTTCEEEEEEEECCS
T ss_pred             CcEEEE---eCCCcccCCeEEEEEEEECCCCCchhCEEEEEEcCC------Cc--eeeEEecCccCCCCEEEEEEEEecC
Confidence            345444   567778999999999999998888876888887753      33  3456788999999999999999999


Q ss_pred             ccceEEeCc
Q 013971          406 KLGVQRITG  414 (433)
Q Consensus       406 ~~Glq~isg  414 (433)
                      .+|.++|-.
T Consensus        72 ~~G~~~l~a   80 (100)
T d1ex0a3          72 VSGHRKLIA   80 (100)
T ss_dssp             SCEEEEEEE
T ss_pred             CcccEEEEE
Confidence            999999754

>d1g0da3 b.1.5.1 (A:584-684) Transglutaminase, two C-terminal domains {Red sea bream (Chrysophrys major) [TaxId: 143350]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Transglutaminase, two C-terminal domains
family: Transglutaminase, two C-terminal domains
domain: Transglutaminase, two C-terminal domains
species: Red sea bream (Chrysophrys major) [TaxId: 143350]

Probab=96.82  E-value=0.0018  Score=51.32  Aligned_cols=75  Identities=17%  Similarity=0.205  Sum_probs=60.7

Q ss_pred             EecCceEEeCCcEEEEEEEEeCCCCccccEEEEEEeCCCCCceeEEEecccceeeeeeCCCCeEEEEEEEEecccceEEe
Q 013971          333 VEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRI  412 (433)
Q Consensus       333 ~~~P~~v~v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~~~~~Lg~L~P~~s~~~~L~l~pl~~Glq~i  412 (433)
                      +++|....+++|+.+++.++|--+..+..-.+.++...       ++.+.+....+.+.|+++.++.+.+.|..+|.++|
T Consensus         6 I~v~g~~~v~~~~~v~vsf~NPL~~~L~~c~~~vEG~G-------L~~~~~~~~~~~v~p~~~~~~~~~~~P~~~G~~~L   78 (101)
T d1g0da3           6 VQVPGKAVVWEPLTAYVSFTNPLPVPLKGGVFTLEGAG-------LLSATQIHVNGAVAPSGKVSVKLSFSPMRTGVRKL   78 (101)
T ss_dssp             EECCSCEETTCCEEEEEEEECCSSSCEESCEEEEEETT-------TEEEEEEECSSEECTTCEEEEEEEECCSSCEEEEE
T ss_pred             EEeCCCcCcCCeEEEEEEEECCCCCeecCEEEEEEcCC-------CCcccEEEecCCcCCCCEEEEEEEEEcCCcccEEE
Confidence            35889999999999999999998887776788887753       13333333357899999999999999999999987


Q ss_pred             Cc
Q 013971          413 TG  414 (433)
Q Consensus       413 sg  414 (433)
                      -.
T Consensus        79 ~a   80 (101)
T d1g0da3          79 LV   80 (101)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

>d2q3za3 b.1.5.1 (A:586-683) Transglutaminase, two C-terminal domains {Human (Homo sapiens), tissue isozyme [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Transglutaminase, two C-terminal domains
family: Transglutaminase, two C-terminal domains
domain: Transglutaminase, two C-terminal domains
species: Human (Homo sapiens), tissue isozyme [TaxId: 9606]

Probab=96.53  E-value=0.0023  Score=50.47  Aligned_cols=74  Identities=11%  Similarity=0.210  Sum_probs=57.8

Q ss_pred             ecCceEEeCCcEEEEEEEEeCCCCccccEEEEEEeCCCCCceeEEEecccceee-eeeCCCCeEEEEEEEEecccceEEe
Q 013971          334 EVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMAL-APVEAFGSTDFHLNLIATKLGVQRI  412 (433)
Q Consensus       334 ~~P~~v~v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~~~~~L-g~L~P~~s~~~~L~l~pl~~Glq~i  412 (433)
                      +++...++++|+.+++.++|--+..+..-.+.++...       ++.+.....+ +.+.|+++.++.+.+.|..+|.++|
T Consensus         7 ~v~g~~~vg~~~~v~vsF~NPL~~~L~~c~~~vEG~G-------L~~~~~~~~~~~~v~pg~~~~~~~~~~P~~~G~~~L   79 (98)
T d2q3za3           7 RILGEPKQKRKLVAEVSLQNPLPVALEGCTFTVEGAG-------LTEEQKTVEIPDPVEAGEEVKVRMDLVPLHMGLHKL   79 (98)
T ss_dssp             EEESCCSSSSCEEEEEEEECCSSSCBCSEEEEEECTT-------TCSSCEEEEECSCBCTTCEEEEEEEECCCSSSCEEE
T ss_pred             EECCCcCcCCeEEEEEEEECCCCCchhCEEEEEEcCC-------cCcCcEEEeCCCccCCCCEEEEEEEEEcCCcccEEE
Confidence            4567778999999999999997777776788887653       1222233445 4699999999999999999999997


Q ss_pred             Cc
Q 013971          413 TG  414 (433)
Q Consensus       413 sg  414 (433)
                      -.
T Consensus        80 ~a   81 (98)
T d2q3za3          80 VV   81 (98)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>d1vjja2 b.1.5.1 (A:479-593) Transglutaminase, two C-terminal domains {Human (Homo sapiens), TGase E3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Transglutaminase, two C-terminal domains
family: Transglutaminase, two C-terminal domains
domain: Transglutaminase, two C-terminal domains
species: Human (Homo sapiens), TGase E3 [TaxId: 9606]

Probab=96.49  E-value=0.0039  Score=50.43  Aligned_cols=71  Identities=13%  Similarity=0.194  Sum_probs=56.3

Q ss_pred             CCeEEEEEecCceEEeCCcEEEEEEEEeCCCCccccEEEEEEeCCCCCceeEEEecccceeee------eeCCCCeEEEE
Q 013971          326 KEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALA------PVEAFGSTDFH  399 (433)
Q Consensus       326 ~dl~l~v~~~P~~v~v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~~~~~Lg------~L~P~~s~~~~  399 (433)
                      .|+.+.+ ++.+.+.++++|.+.+.++|+|++... +.+.+..      .++.|+|.....+.      .|.|+++..+.
T Consensus         2 ~~v~~~l-kl~~~~~iG~Df~v~l~~~N~s~~~~~-v~l~l~a------~av~YtG~~~~~~~~~~~~v~L~p~~~~~v~   73 (115)
T d1vjja2           2 PSIIGKL-KVAGMLAVGKEVNLVLLLKNLSRDTKT-VTVNMTA------WTIIYNGTLVHEVWKDSATMSLDPEEEAEHP   73 (115)
T ss_dssp             CSEEEEE-EECSCCBTTSCEEEEEEEEECSSSCEE-EEEEEEE------EEECTTCCEEEEEEEEEEEEEECTTCEEEEE
T ss_pred             CCeEEEE-EcCCCCCCCCCEEEEEEEEECCCCCEE-EEEEEEE------EEEEeCCcCchheEEeeEEEEECCCCeEEEE
Confidence            4566664 667889999999999999999988766 7777754      36788887766554      48999999999


Q ss_pred             EEEEe
Q 013971          400 LNLIA  404 (433)
Q Consensus       400 L~l~p  404 (433)
                      +.+-+
T Consensus        74 ~~v~y   78 (115)
T d1vjja2          74 IKISY   78 (115)
T ss_dssp             EEECH
T ss_pred             EEECH
Confidence            98865

>d1ex0a2 b.1.5.1 (A:516-627) Transglutaminase, two C-terminal domains {Human (Homo sapiens), blood isozyme [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Transglutaminase, two C-terminal domains
family: Transglutaminase, two C-terminal domains
domain: Transglutaminase, two C-terminal domains
species: Human (Homo sapiens), blood isozyme [TaxId: 9606]

Probab=96.45  E-value=0.0032  Score=50.72  Aligned_cols=70  Identities=17%  Similarity=0.309  Sum_probs=53.9

Q ss_pred             CeEEEEEecCceEEeCCcEEEEEEEEeCCCCccccEEEEEEeCCCCCceeEEEecccceeee------eeCCCCeEEEEE
Q 013971          327 EIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALA------PVEAFGSTDFHL  400 (433)
Q Consensus       327 dl~l~v~~~P~~v~v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~~~~~Lg------~L~P~~s~~~~L  400 (433)
                      |+++.+ ++ +-+.++++|.+.+.++|+|+.... +.+.+...      ++.|+|.....++      .|.|+++.++.+
T Consensus         2 dV~~~~-~~-~~~~iG~df~v~i~~~N~s~~~~~-v~l~l~a~------~v~YtG~~~~~~~~~~~~v~L~p~~~~~v~~   72 (112)
T d1ex0a2           2 NVDMDF-EV-ENAVLGKDFKLSITFRNNSHNRYT-ITAYLSAN------ITFYTGVPKAEFKKETFDVTLEPLSFKKEAV   72 (112)
T ss_dssp             CEEEEE-EE-CCCBTTCCEEEEEEEEECSSSCEE-EEEEEEEE------EECTTSCEEEEEEEEEEEEEECTTEEEEEEE
T ss_pred             ceEEEE-Ee-cCcccCCCEEEEEEEEECCCCCEE-EEEEEEEE------EEEeCCcCchheEEeeEEEEECCCCEEEEEE
Confidence            666776 45 447799999999999999887766 77777553      6777777666543      489999999999


Q ss_pred             EEEec
Q 013971          401 NLIAT  405 (433)
Q Consensus       401 ~l~pl  405 (433)
                      ++-+-
T Consensus        73 ~v~~~   77 (112)
T d1ex0a2          73 LIQAG   77 (112)
T ss_dssp             EECHH
T ss_pred             EEcHH
Confidence            87653

>d2q3za2 b.1.5.1 (A:472-585) Transglutaminase, two C-terminal domains {Human (Homo sapiens), tissue isozyme [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Transglutaminase, two C-terminal domains
family: Transglutaminase, two C-terminal domains
domain: Transglutaminase, two C-terminal domains
species: Human (Homo sapiens), tissue isozyme [TaxId: 9606]

Probab=95.77  E-value=0.012  Score=47.39  Aligned_cols=65  Identities=20%  Similarity=0.254  Sum_probs=51.6

Q ss_pred             ecCceEEeCCcEEEEEEEEeCCCCccccEEEEEEeCCCCCceeEEEecccceeee-------eeCCCCeEEEEEEEEec
Q 013971          334 EVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALA-------PVEAFGSTDFHLNLIAT  405 (433)
Q Consensus       334 ~~P~~v~v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~~~~~Lg-------~L~P~~s~~~~L~l~pl  405 (433)
                      ++.+.+.+++.|.+.+.++|+|+.... +.+.+..      .++.|+|.....++       .|.|+++.++.+++-+-
T Consensus         7 k~~~~~~iG~Df~v~~~~~N~s~~~~~-v~l~l~a------~~v~YtG~~~~~~~~k~~~~v~L~p~~~~~v~~~v~y~   78 (114)
T d2q3za2           7 RVGQSMNMGSDFDVFAHITNNTAEEYV-CRLLLCA------RTVSYNGILGPECGTKYLLNLTLEPFSEKSVPLCILYE   78 (114)
T ss_dssp             ECCSCCBTTCCEEEEEEEEECSSSCEE-EEEEEEE------EEECTTCCEEEEEEEEEEEEEEECTTEEEEEEEEECHH
T ss_pred             EeCCCCcCCCCEEEEEEEEeCCCCCEE-EEEEEEE------EEEEeCCcCcceeEEecceEEEECCCCEEEEEEEEcHH
Confidence            667889999999999999999888765 7777654      36788887664432       49999999999988653

>d1g0da2 b.1.5.1 (A:472-583) Transglutaminase, two C-terminal domains {Red sea bream (Chrysophrys major) [TaxId: 143350]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Transglutaminase, two C-terminal domains
family: Transglutaminase, two C-terminal domains
domain: Transglutaminase, two C-terminal domains
species: Red sea bream (Chrysophrys major) [TaxId: 143350]

Probab=95.55  E-value=0.016  Score=46.39  Aligned_cols=68  Identities=16%  Similarity=0.182  Sum_probs=51.5

Q ss_pred             eEEEEEecCceEEeCCcEEEEEEEEeCCCCccccEEEEEEeCCCCCceeEEEecccceeee------eeCCCCeEEEEEE
Q 013971          328 IELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALA------PVEAFGSTDFHLN  401 (433)
Q Consensus       328 l~l~v~~~P~~v~v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~~~~~Lg------~L~P~~s~~~~L~  401 (433)
                      +++++..-| .+ ++++|.+.+.++|+|++... +.+.+..      .++.|+|.....++      .|.|+++.++.++
T Consensus         2 l~~~ik~~~-~~-~G~Df~v~i~~~N~s~~~~~-v~l~l~a------~~v~YtG~~~~~~~~~~~~v~L~p~~~~~v~~~   72 (112)
T d1g0da2           2 LQLSIKHAQ-PV-FGTDFDVIVEVKNEGGRDAH-AQLTMLA------MAVTYNSLRRGECQRKTISVTVPAHKAHKEVMR   72 (112)
T ss_dssp             EEEEEEECC-CB-TTCCEEEEEEEEECSSSCEE-EEEEEEE------EEECTTCBCCCCCCEEEEEEEECTTEEEEEEEE
T ss_pred             eEEEEeCCC-Cc-cCCCEEEEEEEEECCCCCEE-EEEEEEE------EEEEeCCcCccceeEeeEEEEECCCCeEEEEEE
Confidence            445554334 33 79999999999999988776 7777755      37888887766544      4899999999998


Q ss_pred             EEe
Q 013971          402 LIA  404 (433)
Q Consensus       402 l~p  404 (433)
                      +-+
T Consensus        73 i~y   75 (112)
T d1g0da2          73 LHY   75 (112)
T ss_dssp             ECH
T ss_pred             EcH
Confidence            765

>d2q3za3 b.1.5.1 (A:586-683) Transglutaminase, two C-terminal domains {Human (Homo sapiens), tissue isozyme [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Transglutaminase, two C-terminal domains
family: Transglutaminase, two C-terminal domains
domain: Transglutaminase, two C-terminal domains
species: Human (Homo sapiens), tissue isozyme [TaxId: 9606]

Probab=95.07  E-value=0.048  Score=42.54  Aligned_cols=73  Identities=15%  Similarity=0.268  Sum_probs=60.7

Q ss_pred             ccceeecceeeEEEEEEcCCCCceeeEEEEEE---EeCCCceeeccCCCCCCccccCCCCeeeEEEEEEcccccceEEEE
Q 013971           94 FGAIYLGETFCSYISINNSSTLEVRDVVIKAE---IQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVC  170 (433)
Q Consensus        94 fG~iylGEtF~~~i~v~N~s~~~v~~V~ikve---lqT~s~r~~L~~~~~~~~~~L~pg~~ld~iv~~~lke~G~h~L~c  170 (433)
                      .|.+.+|+.+.+.+++.|--..+++++.+.+|   |+.+..++.+.+       .+.||+++...+.+-=+..|.+.|.+
T Consensus         9 ~g~~~vg~~~~v~vsF~NPL~~~L~~c~~~vEG~GL~~~~~~~~~~~-------~v~pg~~~~~~~~~~P~~~G~~~L~a   81 (98)
T d2q3za3           9 LGEPKQKRKLVAEVSLQNPLPVALEGCTFTVEGAGLTEEQKTVEIPD-------PVEAGEEVKVRMDLVPLHMGLHKLVV   81 (98)
T ss_dssp             ESCCSSSSCEEEEEEEECCSSSCBCSEEEEEECTTTCSSCEEEEECS-------CBCTTCEEEEEEEECCCSSSCEEEEE
T ss_pred             CCCcCcCCeEEEEEEEECCCCCchhCEEEEEEcCCcCcCcEEEeCCC-------ccCCCCEEEEEEEEEcCCcccEEEEE
Confidence            47789999999999999999999999999998   444444444422       48899999999999999999999988


Q ss_pred             EEE
Q 013971          171 TAL  173 (433)
Q Consensus       171 ~V~  173 (433)
                      ..+
T Consensus        82 ~f~   84 (98)
T d2q3za3          82 NFE   84 (98)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            753

>d1vjja3 b.1.5.1 (A:594-692) Transglutaminase, two C-terminal domains {Human (Homo sapiens), TGase E3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Transglutaminase, two C-terminal domains
family: Transglutaminase, two C-terminal domains
domain: Transglutaminase, two C-terminal domains
species: Human (Homo sapiens), TGase E3 [TaxId: 9606]

Probab=94.71  E-value=0.056  Score=42.17  Aligned_cols=71  Identities=14%  Similarity=0.124  Sum_probs=59.2

Q ss_pred             cceeecceeeEEEEEEcCCCCceeeEEEEEE---EeCCCceeeccCCCCCCccccCCCCeeeEEEEEEcccccceEEEEE
Q 013971           95 GAIYLGETFCSYISINNSSTLEVRDVVIKAE---IQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCT  171 (433)
Q Consensus        95 G~iylGEtF~~~i~v~N~s~~~v~~V~ikve---lqT~s~r~~L~~~~~~~~~~L~pg~~ld~iv~~~lke~G~h~L~c~  171 (433)
                      |.+.+|+.+.+.+++.|--..+++++.+.+|   |..+..++.+        .++.||++....+.+-=+..|.|.|.+.
T Consensus         9 ~~~~v~~~~~v~vsf~NPL~~~L~~c~f~vEG~GL~~~~~~~~~--------~~v~p~~~~~~~~~~~P~~~G~~~l~a~   80 (99)
T d1vjja3           9 NEARVRKPVNVQMLFSNPLDEPVRDCVLMVEGSGLLLGNLKIDV--------PTLGPKERSRVRFDILPSRSGTKQLLAD   80 (99)
T ss_dssp             SCCBTTSCEEEEEEEECCSSSCBCSEEEEEECTTTSSSCEEEEE--------CCBCTTCEEEEEEEECCCSCEEEEEEEE
T ss_pred             CCcCcCCeEEEEEEEECCCCCchhCEEEEEEeCCCCCccEEEec--------CccCCCCEEEEEEEEEcCCcccEEEEEE
Confidence            6688999999999999999999999999998   3333333333        2589999999999999999999999887


Q ss_pred             EE
Q 013971          172 AL  173 (433)
Q Consensus       172 V~  173 (433)
                      .+
T Consensus        81 f~   82 (99)
T d1vjja3          81 FS   82 (99)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

>d3es6b1 b.1.18.23 (B:1-118) Prolactin-inducible protein, PIP {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: SVA-like
domain: Prolactin-inducible protein, PIP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.57  E-value=0.051  Score=43.67  Aligned_cols=74  Identities=11%  Similarity=0.017  Sum_probs=57.7

Q ss_pred             cCCeEEEEEecCceEEeCCcEEEEEEEEeCCCCccccEEEEEEeCCCCCceeEEEecccceeeeeeCCCCeEEEEEEEEe
Q 013971          325 SKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIA  404 (433)
Q Consensus       325 ~~dl~l~v~~~P~~v~v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~~~~~Lg~L~P~~s~~~~L~l~p  404 (433)
                      .+++-+. .++|-.+.-++-|.+...|.|+.+..|. +.+.|..++     +|.......... -|.++++.+|.|.+.|
T Consensus         5 ~k~~~~~-l~lP~sv~rge~~~i~~~V~Nyl~~~~~-v~v~L~~s~-----~~~~~~~~~~~~-cv~~~~~~t~~w~i~~   76 (118)
T d3es6b1           5 RKIIIKN-FDIPKSVRPNDEVTAVLAVQTELKECMV-VKTYLISSI-----PLQGAFNYKYTA-CLCDDNPKTFYWDFYT   76 (118)
T ss_dssp             CCCCEEC-CCCCSEECSSCCEEEEEEEEECCSSCEE-EEEEEEESS-----CCCSGGGCEEEE-EECSSSCEEEEEEECC
T ss_pred             eeeEEEE-cCCCceEecCCEEEEEEEEEECccceEE-EEEEEecCC-----CEEccCCCCcce-EECCCCceEEEEEEEe
Confidence            3555444 4899999999999999999999999998 999998875     333333333344 6899999999999988


Q ss_pred             cc
Q 013971          405 TK  406 (433)
Q Consensus       405 l~  406 (433)
                      +.
T Consensus        77 ~g   78 (118)
T d3es6b1          77 NR   78 (118)
T ss_dssp             SS
T ss_pred             cC
Confidence            63

>d1g0da3 b.1.5.1 (A:584-684) Transglutaminase, two C-terminal domains {Red sea bream (Chrysophrys major) [TaxId: 143350]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Transglutaminase, two C-terminal domains
family: Transglutaminase, two C-terminal domains
domain: Transglutaminase, two C-terminal domains
species: Red sea bream (Chrysophrys major) [TaxId: 143350]

Probab=93.19  E-value=0.1  Score=40.73  Aligned_cols=72  Identities=15%  Similarity=0.208  Sum_probs=58.8

Q ss_pred             ccceeecceeeEEEEEEcCCCCceeeEEEEEEE---eCCCceeeccCCCCCCccccCCCCeeeEEEEEEcccccceEEEE
Q 013971           94 FGAIYLGETFCSYISINNSSTLEVRDVVIKAEI---QTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVC  170 (433)
Q Consensus        94 fG~iylGEtF~~~i~v~N~s~~~v~~V~ikvel---qT~s~r~~L~~~~~~~~~~L~pg~~ld~iv~~~lke~G~h~L~c  170 (433)
                      -|.+.+|+.+.+.+++.|--..+++++.+.+|=   +.+ +++..       ..++.||+++...+.+-=+..|.|.|.+
T Consensus         9 ~g~~~v~~~~~v~vsf~NPL~~~L~~c~~~vEG~GL~~~-~~~~~-------~~~v~p~~~~~~~~~~~P~~~G~~~L~a   80 (101)
T d1g0da3           9 PGKAVVWEPLTAYVSFTNPLPVPLKGGVFTLEGAGLLSA-TQIHV-------NGAVAPSGKVSVKLSFSPMRTGVRKLLV   80 (101)
T ss_dssp             CSCEETTCCEEEEEEEECCSSSCEESCEEEEEETTTEEE-EEEEC-------SSEECTTCEEEEEEEECCSSCEEEEEEE
T ss_pred             CCCcCcCCeEEEEEEEECCCCCeecCEEEEEEcCCCCcc-cEEEe-------cCCcCCCCEEEEEEEEEcCCcccEEEEE
Confidence            367899999999999999999999999999983   222 22222       1268999999999999999999999998


Q ss_pred             EEE
Q 013971          171 TAL  173 (433)
Q Consensus       171 ~V~  173 (433)
                      ..+
T Consensus        81 ~f~   83 (101)
T d1g0da3          81 DFD   83 (101)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            753

>d1ex0a3 b.1.5.1 (A:628-727) Transglutaminase, two C-terminal domains {Human (Homo sapiens), blood isozyme [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Transglutaminase, two C-terminal domains
family: Transglutaminase, two C-terminal domains
domain: Transglutaminase, two C-terminal domains
species: Human (Homo sapiens), blood isozyme [TaxId: 9606]

Probab=90.88  E-value=0.44  Score=36.90  Aligned_cols=71  Identities=13%  Similarity=0.152  Sum_probs=58.6

Q ss_pred             cceeecceeeEEEEEEcCCCCceeeEEEEEEEeCC--CceeeccCCCCCCccccCCCCeeeEEEEEEcccccceEEEEEE
Q 013971           95 GAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTD--KQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTA  172 (433)
Q Consensus        95 G~iylGEtF~~~i~v~N~s~~~v~~V~ikvelqT~--s~r~~L~~~~~~~~~~L~pg~~ld~iv~~~lke~G~h~L~c~V  172 (433)
                      |.+.+|+.+.+.+++.|--..+++|+.+.+|=--=  .+++.        ..++.||+++...+.+-=+..|.|.|.+..
T Consensus        11 g~~~v~~~~~v~v~F~NPL~~~L~nc~~~vEG~GL~~~~~~~--------~~~v~p~~~~~~~~~~~P~~~G~~~l~a~f   82 (100)
T d1ex0a3          11 GTQVVGSDMTVTVQFTNPLKETLRNVWVHLDGPGVTRPMKKM--------FREIRPNSTVQWEEVCRPWVSGHRKLIASM   82 (100)
T ss_dssp             ECCBTTSCEEEEEEEECCSSSCEEEEEEEEEETTTEEEEEEE--------EEEECTTCEEEEEEEECCSSCEEEEEEEEE
T ss_pred             CCcccCCeEEEEEEEECCCCCchhCEEEEEEcCCCceeeEEe--------cCccCCCCEEEEEEEEecCCcccEEEEEEE
Confidence            77899999999999999999999999999984111  11222        347899999999999999999999998875


Q ss_pred             E
Q 013971          173 L  173 (433)
Q Consensus       173 ~  173 (433)
                      +
T Consensus        83 ~   83 (100)
T d1ex0a3          83 S   83 (100)
T ss_dssp             E
T ss_pred             E
Confidence            3