Citrus Sinensis ID: 013974

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430---
MDAKYPFLSEYEKEELDRISRTRSSLSEKISFHKQLTGELPIAHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATILIVLCVLFLGTIEGIGFHPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFTKALITCFALCVLIYGGVAVMGFLMFGQGTLSQITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGISNNYWCFILLRTALVFSSVCAAFLLPFFSLVMALIGSLLSILAIIMPSLCFIKILGRKATRTQIVSSTAIAVLGVICAILGTFSSVAKIAENY
ccccccccccHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHcccccccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHEEEcccccccccccccccccccccHHHHHHHHHHcccccccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
cccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcHEEEHHHHHHHHHHHHEEHHEEccHHHHHHcHHcccccccccccccEEEEEEEEHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHccccccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEccccHHHHHHHHHHHHHHHHHHHHHEEEcHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
mdakypflseYEKEELDRISRTRSSLSEKISFHKqltgelpiahgcsftQTIFNGINVMAGvgllstpytvkeaGWASLVVLLLFAVVCCYTASLMRYCFEskegittypdigeaaFGKYGRLLISVLLYTELYSYCVEFIILegdnltslfpgasldwpgfqldsthLFGILTALIVLPTIWLRDLRVISYLSATGVVATILIVLCVLFLgtiegigfhptgqvvkwsgmpfaigIYGFcysghsvfpniyqsmADKTKFTKALITCFALCVLIYGGVAVMGFLMfgqgtlsqitlnmpphafASKVAVWTTVINPFTKYALLMNPLARSIEELlpagisnnyWCFILLRTALVFSSVCAAFLLPFFSLVMALIGSLLSILAIIMPSLCFIKILgrkatrtqIVSSTAIAVLGVICAILGTFSSVAKIAENY
mdakypflseyekeeldrISRTRSSLSEKISFHKQLTGELPIAHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATILIVLCVLFLGTIEGIGFHPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFTKALITCFALCVLIYGGVAVMGFLMFGQGTLSQITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGISNNYWCFILLRTALVFSSVCAAFLLPFFSLVMALIGSLLSILAIIMPSLCFIKILGRKATRTQIVSSTAIAVLGVICAILGTFSSVAKIAENY
MDAKYPFLSEYEKEELDRISRTRSSLSEKISFHKQLTGELPIAHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWASlvvlllfavvCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATILIVLCVLFLGTIEGIGFHPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFTKALITCFALCVLIYGGVAVMGFLMFGQGTLSQITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGISNNYWCFILLRTALVFSSVCAAFLLPFFSLVMaligsllsilaiiMPSLCFIKILGRKATRTQIVSSTAIAVLGVICAILGTFSSVAKIAENY
*******************************FHKQLTGELPIAHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATILIVLCVLFLGTIEGIGFHPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFTKALITCFALCVLIYGGVAVMGFLMFGQGTLSQITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGISNNYWCFILLRTALVFSSVCAAFLLPFFSLVMALIGSLLSILAIIMPSLCFIKILGRKATRTQIVSSTAIAVLGVICAILGTFSSVAK*****
*************************************************QTIFNGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATILIVLCVLFLGTIEGIGFHPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFTKALITCFALCVLIYGGVAVMGFLMFGQGTLSQITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGISNNYWCFILLRTALVFSSVCAAFLLPFFSLVMALIGSLLSILAIIMPSLCFIKILGRKATRTQIVSSTAIAVLGVICAILGTFSSVAKIAENY
MDAKYPFLSEYEKEELDRISRTRSSLSEKISFHKQLTGELPIAHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATILIVLCVLFLGTIEGIGFHPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFTKALITCFALCVLIYGGVAVMGFLMFGQGTLSQITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGISNNYWCFILLRTALVFSSVCAAFLLPFFSLVMALIGSLLSILAIIMPSLCFIKILGRKATRTQIVSSTAIAVLGVICAILGTFSSVAKIAENY
******************************************AHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATILIVLCVLFLGTIEGIGFHPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFTKALITCFALCVLIYGGVAVMGFLMFGQGTLSQITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGISNNYWCFILLRTALVFSSVCAAFLLPFFSLVMALIGSLLSILAIIMPSLCFIKILGRKATRTQIVSSTAIAVLGVICAILGTFSSVAKIAENY
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooo
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MDAKYPFLSEYEKEELDRISRTRSSLSEKISFHKQLTGELPIAHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATILIVLCVLFLGTIEGIGFHPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFTKALITCFALCVLIYGGVAVMGFLMFGQGTLSQITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGISNNYWCFILLRTALVFSSVCAAFLLPFFSLVMALIGSLLSILAIIMPSLCFIKILGRKATRTQIVSSTAIAVLGVICAILGTFSSVAKIAENY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query433 2.2.26 [Sep-21-2011]
P47082602 Vacuolar amino acid trans yes no 0.824 0.593 0.316 3e-33
Q6PF45518 Vesicular inhibitory amin N/A no 0.914 0.764 0.264 1e-22
Q6DIV6518 Vesicular inhibitory amin yes no 0.831 0.694 0.270 8e-22
Q9H598525 Vesicular inhibitory amin yes no 0.838 0.691 0.265 3e-18
O35633525 Vesicular inhibitory amin yes no 0.840 0.693 0.265 4e-18
Q95KE2525 Vesicular inhibitory amin N/A no 0.840 0.693 0.265 4e-18
O35458525 Vesicular inhibitory amin yes no 0.840 0.693 0.265 4e-18
P34579486 Vesicular GABA transporte yes no 0.907 0.808 0.222 2e-16
Q4KL91522 Proton-coupled amino acid N/A no 0.896 0.743 0.238 8e-16
Q811P0477 Proton-coupled amino acid no no 0.891 0.809 0.248 2e-15
>sp|P47082|AVT1_YEAST Vacuolar amino acid transporter 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AVT1 PE=1 SV=1 Back     alignment and function desciption
 Score =  143 bits (360), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 128/404 (31%), Positives = 192/404 (47%), Gaps = 47/404 (11%)

Query: 50  QTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITT 108
           QTIFN INV+ G+GLL+ P  +K AGW   L +L +FA+    TA L+  C ++   + +
Sbjct: 212 QTIFNSINVLIGIGLLALPLGLKYAGWVIGLTMLAIFALATFCTAELLSRCLDTDPTLIS 271

Query: 109 YPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTH 168
           Y D+G AAFG  GR LIS L   +L    V  +IL GD+L +LFP            ST 
Sbjct: 272 YADLGYAAFGTKGRALISALFTLDLLGSGVSLVILFGDSLNALFPQY----------STT 321

Query: 169 LFGILTALIVLPTIWLRDLRVISYLSATGVVAT----ILIVLCVLFLGTIEGIGFHPTGQ 224
            F I++  IV P +++  L V+S +S  G+++T    ++I  C L+  +  G   +P  +
Sbjct: 322 FFKIVSFFIVTPPVFI-PLSVLSNISLLGILSTTGTVLVICCCGLYKSSSPGSLVNPM-E 379

Query: 225 VVKW----SGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFTKALITCFALCVLIYGGVA 280
              W      +  +IG+   C+ GH+VFPN+   M    KF   L T + +  +   G A
Sbjct: 380 TSMWPIDLKHLCLSIGLLSACWGGHAVFPNLKTDMRHPDKFKDCLKTTYKITSVTDIGTA 439

Query: 281 VMGFLMFGQGTLSQITLNM------PPHAFASKVAVWTTVINPFTKYALLMNPLARSIEE 334
           V+GFLMFG     +IT N+      P   +    A+ T +  P  K  L   P+   ++ 
Sbjct: 440 VIGFLMFGNLVKDEITKNVLLTEGYPKFVYGLISALMTII--PIAKTPLNARPIVSVLDV 497

Query: 335 LLPAGISNNYWCFILLRTA---LVFSS-------VCAAFLLPFFSLVMALIGS-LLSILA 383
           L+     +     I  R A    VF+        V  A   P F  ++A +G+ L   + 
Sbjct: 498 LMNVQHIDEAASAIKRRAAKGLQVFNRIFINVVFVLIAINFPEFDKIIAFLGAGLCFTIC 557

Query: 384 IIMP-----SLC--FIKILGRKATRTQIVSSTAIAVLGVICAIL 420
           +I+P      LC   IK   R A    I  S  ++ LGV  AI+
Sbjct: 558 LILPCWFYLRLCKTTIKPWERVACHVTICISVVLSTLGVGAAII 601
Required for the vacuolar uptake of large neutral amino acids including tyrosine, glutamine, asparagine, isoleucine and leucine. Requires ATP for function.
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
>sp|Q6PF45|VIAAT_XENLA Vesicular inhibitory amino acid transporter OS=Xenopus laevis GN=slc32a1 PE=2 SV=1 Back     alignment and function description
>sp|Q6DIV6|VIAAT_XENTR Vesicular inhibitory amino acid transporter OS=Xenopus tropicalis GN=slc32a1 PE=2 SV=1 Back     alignment and function description
>sp|Q9H598|VIAAT_HUMAN Vesicular inhibitory amino acid transporter OS=Homo sapiens GN=SLC32A1 PE=1 SV=2 Back     alignment and function description
>sp|O35633|VIAAT_MOUSE Vesicular inhibitory amino acid transporter OS=Mus musculus GN=Slc32a1 PE=1 SV=3 Back     alignment and function description
>sp|Q95KE2|VIAAT_MACFA Vesicular inhibitory amino acid transporter OS=Macaca fascicularis GN=SLC32A1 PE=2 SV=1 Back     alignment and function description
>sp|O35458|VIAAT_RAT Vesicular inhibitory amino acid transporter OS=Rattus norvegicus GN=Slc32a1 PE=1 SV=1 Back     alignment and function description
>sp|P34579|UNC47_CAEEL Vesicular GABA transporter OS=Caenorhabditis elegans GN=unc-47 PE=1 SV=2 Back     alignment and function description
>sp|Q4KL91|S36A4_XENLA Proton-coupled amino acid transporter 4 OS=Xenopus laevis GN=slc36a4 PE=2 SV=1 Back     alignment and function description
>sp|Q811P0|S36A3_MOUSE Proton-coupled amino acid transporter 3 OS=Mus musculus GN=Slc36a3 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query433
359482241 537 PREDICTED: vacuolar amino acid transport 1.0 0.806 0.753 0.0
449437719 539 PREDICTED: vacuolar amino acid transport 1.0 0.803 0.744 0.0
356498515531 PREDICTED: vacuolar amino acid transport 0.976 0.796 0.728 0.0
297827755 534 amino acid transporter family protein [A 0.988 0.801 0.747 0.0
18405629 536 transmembrane amino acid transporter-lik 0.988 0.798 0.742 0.0
356537361 548 PREDICTED: vacuolar amino acid transport 0.983 0.777 0.716 0.0
356570419 546 PREDICTED: vacuolar amino acid transport 0.988 0.783 0.705 1e-180
23397299407 unknown protein [Arabidopsis thaliana] 0.930 0.990 0.770 1e-179
356495667 534 PREDICTED: vacuolar amino acid transport 0.983 0.797 0.700 1e-176
413939266 543 hypothetical protein ZEAMMB73_340954 [Ze 0.997 0.795 0.668 1e-171
>gi|359482241|ref|XP_002266914.2| PREDICTED: vacuolar amino acid transporter 1-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  701 bits (1809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/438 (75%), Positives = 391/438 (89%), Gaps = 5/438 (1%)

Query: 1   MDAKYPFLSE----YEKEELDRISRTRSSLSEKISFHKQLTGELPIAHGCSFTQTIFNGI 56
           +D K P L+E    Y+KE+ DRISRT+ SLSEK SFH+QLTGELPI++GCSFTQT+FNG+
Sbjct: 100 LDGKTPLLTEQEKNYQKEDTDRISRTQLSLSEKASFHEQLTGELPISYGCSFTQTVFNGV 159

Query: 57  NVMAGVGLLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAA 116
           NV+AG+GLLSTPY VKEAGWASL VL+LFAVVCCYTASL+RYC ESKEGI TYPDIGEAA
Sbjct: 160 NVLAGIGLLSTPYAVKEAGWASLAVLVLFAVVCCYTASLLRYCLESKEGIITYPDIGEAA 219

Query: 117 FGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTAL 176
           FG+YGRL +S +LYTELYSYCVEFIILEGDNLT LFPGASL+W GFQLDS HLFGILTAL
Sbjct: 220 FGRYGRLFVSFVLYTELYSYCVEFIILEGDNLTRLFPGASLNWGGFQLDSLHLFGILTAL 279

Query: 177 IVLPTIWLRDLRVISYLSATGVVATILIVLCVLFLGTIEGIGFHPTGQVVKWSGMPFAIG 236
           IVLPT+WLRDLRVIS LSA GV+AT+LIV+ V+F+G   GIGFH TG++V W G+PF+IG
Sbjct: 280 IVLPTVWLRDLRVISCLSAGGVLATVLIVVSVIFVGITAGIGFHQTGKLVNWGGIPFSIG 339

Query: 237 IYGFCYSGHSVFPNIYQSMADKTKFTKALITCFALCVLIYGGVAVMGFLMFGQGTLSQIT 296
           +YGFC+SGH+VFPNIYQSMADKTKF+KALI    LCV+IYGG+A++GFLMFGQGT+SQIT
Sbjct: 340 VYGFCFSGHTVFPNIYQSMADKTKFSKALIVSILLCVIIYGGIAIVGFLMFGQGTMSQIT 399

Query: 297 LNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGISNNYWCFILLRTALVF 356
           LN+P H FASK+A+WTTVINPFTKYALLMNPLARSIEELLP  ISN++WCFILLRTALV 
Sbjct: 400 LNIPRHVFASKIALWTTVINPFTKYALLMNPLARSIEELLPVRISNSFWCFILLRTALVI 459

Query: 357 SSVCAAFLLPFFSLVMALIGSLLSIL-AIIMPSLCFIKILGRKATRTQIVSSTAIAVLGV 415
           SSVC AFLLPFF LVM+LIGSLLS+L ++I+P+LC+++I+G KAT+ Q++ S+ +A LGV
Sbjct: 460 SSVCVAFLLPFFGLVMSLIGSLLSVLVSVIIPTLCYLRIMGNKATKAQVIVSSGVAALGV 519

Query: 416 ICAILGTFSSVAKIAENY 433
           ICAILGT+SS+++IA  Y
Sbjct: 520 ICAILGTYSSLSQIARQY 537

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449437719|ref|XP_004136638.1| PREDICTED: vacuolar amino acid transporter 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356498515|ref|XP_003518096.1| PREDICTED: vacuolar amino acid transporter 1-like [Glycine max] Back     alignment and taxonomy information
>gi|297827755|ref|XP_002881760.1| amino acid transporter family protein [Arabidopsis lyrata subsp. lyrata] gi|297327599|gb|EFH58019.1| amino acid transporter family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18405629|ref|NP_030664.1| transmembrane amino acid transporter-like protein [Arabidopsis thaliana] gi|14532708|gb|AAK64155.1| unknown protein [Arabidopsis thaliana] gi|19310729|gb|AAL85095.1| unknown protein [Arabidopsis thaliana] gi|20197120|gb|AAD11993.2| expressed protein [Arabidopsis thaliana] gi|330254848|gb|AEC09942.1| transmembrane amino acid transporter-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356537361|ref|XP_003537196.1| PREDICTED: vacuolar amino acid transporter 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356570419|ref|XP_003553385.1| PREDICTED: vacuolar amino acid transporter 1-like [Glycine max] Back     alignment and taxonomy information
>gi|23397299|gb|AAN31931.1| unknown protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356495667|ref|XP_003516696.1| PREDICTED: vacuolar amino acid transporter 1-like [Glycine max] Back     alignment and taxonomy information
>gi|413939266|gb|AFW73817.1| hypothetical protein ZEAMMB73_340954 [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query433
TAIR|locus:2063255536 AT2G41190 [Arabidopsis thalian 0.988 0.798 0.696 1.2e-159
TAIR|locus:2056118550 AT2G39130 [Arabidopsis thalian 0.958 0.754 0.477 1.8e-110
TAIR|locus:2185158550 AT5G02180 [Arabidopsis thalian 0.903 0.710 0.486 2.1e-100
TAIR|locus:2185143526 AT5G02170 [Arabidopsis thalian 0.960 0.790 0.453 9.4e-98
TAIR|locus:2082652546 AT3G54830 "AT3G54830" [Arabido 0.840 0.666 0.486 2.6e-95
TAIR|locus:2083549528 AT3G09340 "AT3G09340" [Arabido 0.963 0.789 0.419 7.3e-91
TAIR|locus:2083529524 AT3G09330 "AT3G09330" [Arabido 0.963 0.795 0.421 6.5e-90
TAIR|locus:2087012405 AT3G28960 "AT3G28960" [Arabido 0.884 0.945 0.389 9.4e-82
TAIR|locus:2150911423 AT5G15240 [Arabidopsis thalian 0.928 0.950 0.370 7.1e-77
TAIR|locus:2149045426 AT5G16740 [Arabidopsis thalian 0.900 0.915 0.323 1.6e-56
TAIR|locus:2063255 AT2G41190 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1555 (552.4 bits), Expect = 1.2e-159, P = 1.2e-159
 Identities = 303/435 (69%), Positives = 347/435 (79%)

Query:     1 MDAKYPFLSEYEKEELDRISRTRSSLSEKISFHKQLTGELPIA-HGCSFTQTIFNGINVM 59
             +++K P L E   ++ D+ S T+S+ S K SF +    ELPI  +GCS  QTIFN INVM
Sbjct:   106 VESKAPLLPE-RHDDSDKASATQSAWSHKGSFAE----ELPIGGYGCSVIQTIFNAINVM 160

Query:    60 AGVGLLSTPYTVKEAGWASXXXXXXXXXXCCYTASLMRYCFESKEGITTYPDIGEAAFGK 119
             AGVGLLSTPYTVKEAGWAS          CCYTA+LM+ CFE+K GI TYPDIGEAAFGK
Sbjct:   161 AGVGLLSTPYTVKEAGWASMVILLLFAVICCYTATLMKDCFENKTGIITYPDIGEAAFGK 220

Query:   120 YGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVL 179
             YGR+LI +LLYTELYSYCVEFIILEGDNLT LFPG SLD  GF+LDS HLFGILTALIVL
Sbjct:   221 YGRILICMLLYTELYSYCVEFIILEGDNLTGLFPGTSLDLLGFRLDSKHLFGILTALIVL 280

Query:   180 PTIWLRDLRVISYLSATGVVATILIVLCVLFLGTIEGIGFHPTGQVVKWSGMPFAIGIYG 239
             PT+WL+DLR+ISYLSA GV+AT LI + V FLGT  GIGFH TGQ VKW+G+PFAIGIYG
Sbjct:   281 PTVWLKDLRIISYLSAGGVIATALIAVSVFFLGTTGGIGFHHTGQAVKWNGIPFAIGIYG 340

Query:   240 FCYSGHSVFPNIYQSMADKTKFTKALITCFALCVLIYGGVAVMGFLMFGQGTLSQITLNM 299
             FCYSGHSVFPNIYQSMADKTKF KA+ITCF +CVL+YGGVA+MG+LMFG+ TLSQITLNM
Sbjct:   341 FCYSGHSVFPNIYQSMADKTKFNKAVITCFIICVLLYGGVAIMGYLMFGEATLSQITLNM 400

Query:   300 PPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGISNNYWCFILLRTALVFSSV 359
             P   F SKVA WTTV++PFTKYALLMNPLARSIEELLP  +S N WCF+LLRTALV SSV
Sbjct:   401 PQDQFFSKVAQWTTVVSPFTKYALLMNPLARSIEELLPERMSENIWCFLLLRTALVASSV 460

Query:   360 CAAFLLPFFSLVMXXXXXXXXXXXXX-MPSLCFIKILGRKATRTQIVSSTAIAVLGVICA 418
             C+AFL+PFF L+M              MP+LCFIKI+G KATRTQ++ S+ I  +GV+  
Sbjct:   461 CSAFLIPFFGLMMALIGSLLSILVAIIMPALCFIKIMGNKATRTQMILSSIIVAIGVVSG 520

Query:   419 ILGTFSSVAKIAENY 433
              LGT+SSVAKI  NY
Sbjct:   521 TLGTYSSVAKIIRNY 535
GO:0005886 "plasma membrane" evidence=ISM
GO:0006865 "amino acid transport" evidence=ISS
GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS
GO:0016020 "membrane" evidence=ISS
GO:0005774 "vacuolar membrane" evidence=IDA
TAIR|locus:2056118 AT2G39130 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2185158 AT5G02180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2185143 AT5G02170 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082652 AT3G54830 "AT3G54830" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083549 AT3G09340 "AT3G09340" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083529 AT3G09330 "AT3G09330" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2087012 AT3G28960 "AT3G28960" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2150911 AT5G15240 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2149045 AT5G16740 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00000651001
SubName- Full=Chromosome chr8 scaffold_106, whole genome shotgun sequence; (540 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query433
pfam01490406 pfam01490, Aa_trans, Transmembrane amino acid tran 7e-49
COG0814415 COG0814, SdaC, Amino acid permeases [Amino acid tr 3e-20
PTZ00206467 PTZ00206, PTZ00206, amino acid transporter; Provis 1e-09
TIGR00837381 TIGR00837, araaP, aromatic amino acid transport pr 3e-06
pfam03222393 pfam03222, Trp_Tyr_perm, Tryptophan/tyrosine perme 1e-04
PLN03074473 PLN03074, PLN03074, auxin influx permease; Provisi 0.001
>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein Back     alignment and domain information 
 Score =  171 bits (435), Expect = 7e-49
 Identities = 103/405 (25%), Positives = 182/405 (44%), Gaps = 30/405 (7%)

Query: 44  HGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGW-ASLVVLLLFAVVCCYTASLMRYC--- 99
              S  Q +FN I  + G G+LS PY  K+ GW   L++L++  ++  YT  L+  C   
Sbjct: 1   GTISAWQAVFNLIKAIIGAGVLSLPYAFKQLGWIPGLILLVIVGLISLYTLHLLVQCSKY 60

Query: 100 --FESKEGITTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASL 157
                 +   +Y D+G   FG  G+LLI   +   L+  C+ ++I  GDNL ++F     
Sbjct: 61  VDKVKGKRRKSYGDLGYRLFGPKGKLLILFAILVNLFGVCISYLIFAGDNLPAIFDSFFD 120

Query: 158 DWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATILIVLCVLFLGTI--- 214
                 +   + F I+  LI +P  ++ +L  +S LS    V+++ IV+ VL +  +   
Sbjct: 121 TCH---ISLVY-FIIIFGLIFIPLSFIPNLSALSILSLVAAVSSLYIVILVLSVAELGVL 176

Query: 215 --EGIGFHPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSM---ADKTKFTKALITCF 269
             +G+G       +K + +  AIGI  F + GH+V   I  +M   +     TK L+T  
Sbjct: 177 TAQGVGSLGAKTNIKLARLFLAIGIIVFAFEGHAVLLPIQNTMKSPSKFKAMTKVLLTAI 236

Query: 270 ALCVLIYGGVAVMGFLMFGQGTLSQITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLA 329
            +  ++Y  V ++G+L FG      I LN+P   +   +A    V++    Y L   P+ 
Sbjct: 237 IIVTVLYILVGLVGYLAFGNNVKGNILLNLPKSDWLIDIANLLLVLHLLLSYPLQAFPIR 296

Query: 330 RSIEELLPAGISNNY------WCFILLRTALVFSSVCAAFLLPFFSLVMALIGSLLSI-L 382
           + +E LL    ++           +++R+ LV  +   A  +PF    ++L+G+     L
Sbjct: 297 QIVENLLFRKGASGKHNPKSKLLRVVIRSGLVVITYLIAISVPFLGDFLSLVGATSGAPL 356

Query: 383 AIIMPSLCFIKILGRKATRT-----QIVSSTAIAVLGVICAILGT 422
             I+P L  +K+   K           +      V+G++    G 
Sbjct: 357 TFILPPLFHLKLKKTKKKSLEKLWKPDILDVICIVIGLLLMAYGV 401

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406
>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|240313 PTZ00206, PTZ00206, amino acid transporter; Provisional Back     alignment and domain information
>gnl|CDD|233146 TIGR00837, araaP, aromatic amino acid transport protein Back     alignment and domain information
>gnl|CDD|112053 pfam03222, Trp_Tyr_perm, Tryptophan/tyrosine permease family Back     alignment and domain information
>gnl|CDD|215559 PLN03074, PLN03074, auxin influx permease; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 433
KOG1304449 consensus Amino acid transporters [Amino acid tran 100.0
PTZ00206467 amino acid transporter; Provisional 100.0
KOG1303437 consensus Amino acid transporters [Amino acid tran 100.0
PLN03074473 auxin influx permease; Provisional 100.0
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 100.0
KOG4303524 consensus Vesicular inhibitory amino acid transpor 100.0
KOG1305411 consensus Amino acid transporter protein [Amino ac 100.0
COG0814415 SdaC Amino acid permeases [Amino acid transport an 100.0
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 99.96
PRK10483414 tryptophan permease; Provisional 99.96
PRK09664415 tryptophan permease TnaB; Provisional 99.95
PRK15132403 tyrosine transporter TyrP; Provisional 99.95
TIGR00837381 araaP aromatic amino acid transport protein. aroma 99.95
PRK13629443 threonine/serine transporter TdcC; Provisional 99.91
TIGR00814397 stp serine transporter. The HAAAP family includes 99.88
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 99.8
PRK10655438 potE putrescine transporter; Provisional 99.79
PRK10249458 phenylalanine transporter; Provisional 99.78
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 99.76
PRK15049499 L-asparagine permease; Provisional 99.76
PRK11387471 S-methylmethionine transporter; Provisional 99.76
PRK10644445 arginine:agmatin antiporter; Provisional 99.76
PRK11021410 putative transporter; Provisional 99.76
PRK10746461 putative transport protein YifK; Provisional 99.75
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 99.75
KOG1287479 consensus Amino acid transporters [Amino acid tran 99.75
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 99.75
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 99.74
TIGR00909429 2A0306 amino acid transporter. 99.74
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 99.73
PRK10836489 lysine transporter; Provisional 99.73
PRK10580457 proY putative proline-specific permease; Provision 99.73
TIGR00906 557 2A0303 cationic amino acid transport permease. 99.72
TIGR00930 953 2a30 K-Cl cotransporter. 99.72
PRK10238456 aromatic amino acid transporter; Provisional 99.72
TIGR00911501 2A0308 L-type amino acid transporter. 99.72
TIGR00912359 2A0309 spore germination protein (amino acid perme 99.7
TIGR00908442 2A0305 ethanolamine permease. The three genes used 99.7
TIGR00913478 2A0310 amino acid permease (yeast). 99.69
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 99.67
PRK11357445 frlA putative fructoselysine transporter; Provisio 99.66
PRK10197446 gamma-aminobutyrate transporter; Provisional 99.65
COG0833541 LysP Amino acid transporters [Amino acid transport 99.59
KOG1286 554 consensus Amino acid transporters [Amino acid tran 99.51
TIGR03428475 ureacarb_perm permease, urea carboxylase system. A 99.5
COG0531466 PotE Amino acid transporters [Amino acid transport 99.5
TIGR00907482 2A0304 amino acid permease (GABA permease). 99.46
PRK15238496 inner membrane transporter YjeM; Provisional 99.41
TIGR03813474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 99.41
PF03845320 Spore_permease: Spore germination protein; InterPr 99.39
TIGR00910 507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 99.31
PF00324478 AA_permease: Amino acid permease; InterPro: IPR004 99.19
KOG1289550 consensus Amino acid transporters [Amino acid tran 99.08
KOG3832319 consensus Predicted amino acid transporter [Genera 98.97
COG3949349 Uncharacterized membrane protein [Function unknown 98.83
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 98.59
COG1457442 CodB Purine-cytosine permease and related proteins 98.56
PRK09442483 panF sodium/panthothenate symporter; Provisional 98.51
PRK12488 549 acetate permease; Provisional 98.47
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 98.44
TIGR00813407 sss transporter, SSS family. have different number 98.44
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 98.43
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 98.41
PRK11375484 allantoin permease; Provisional 98.31
COG0591493 PutP Na+/proline symporter [Amino acid transport a 98.28
PRK09395 551 actP acetate permease; Provisional 98.22
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 98.18
TIGR02711 549 symport_actP cation/acetate symporter ActP. Member 98.13
PRK11017404 codB cytosine permease; Provisional 98.09
PRK00701439 manganese transport protein MntH; Reviewed 97.96
COG0733439 Na+-dependent transporters of the SNF family [Gene 97.89
PF02554376 CstA: Carbon starvation protein CstA; InterPro: IP 97.87
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 97.75
TIGR03648 552 Na_symport_lg probable sodium:solute symporter, VC 97.73
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 97.71
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 97.69
TIGR00835425 agcS amino acid carrier protein. Members of the AG 97.56
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 97.52
KOG2082 1075 consensus K+/Cl- cotransporter KCC1 and related tr 97.48
PRK15419502 proline:sodium symporter PutP; Provisional 97.42
PRK10484523 putative transporter; Provisional 97.37
COG1966 575 CstA Carbon starvation protein, predicted membrane 97.25
KOG1288 945 consensus Amino acid transporters [Amino acid tran 97.09
PF00209523 SNF: Sodium:neurotransmitter symporter family; Int 96.99
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 96.93
COG1115452 AlsT Na+/alanine symporter [Amino acid transport a 96.9
PRK15015 701 carbon starvation protein A; Provisional 96.71
KOG2083 643 consensus Na+/K+ symporter [Inorganic ion transpor 96.34
PF01566358 Nramp: Natural resistance-associated macrophage pr 95.67
PHA02764399 hypothetical protein; Provisional 94.47
COG4147529 DhlC Predicted symporter [General function predict 94.47
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 94.36
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 93.06
KOG2349 585 consensus Na+:iodide/myo-inositol/multivitamin sym 92.26
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 91.34
COG1114431 BrnQ Branched-chain amino acid permeases [Amino ac 91.03
PRK15433439 branched-chain amino acid transport system 2 carri 88.6
KOG3659 629 consensus Sodium-neurotransmitter symporter [Signa 86.02
TIGR01197390 nramp NRAMP (natural resistance-associated macroph 83.89
cd08762179 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYB 81.93
PF02028485 BCCT: BCCT family transporter; InterPro: IPR000060 80.59
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.4e-56  Score=421.67  Aligned_cols=381  Identities=23%  Similarity=0.371  Sum_probs=336.3

Q ss_pred             CCCCchHHHHHHHHHHhhccccchhHHHHhhhcHH-HHHHHHHHHHHHHHHHHHHHHhhh-----hCCCCCCHHHHHHHh
Q 013974           43 AHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFE-----SKEGITTYPDIGEAA  116 (433)
Q Consensus        43 ~~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~-g~~~~l~~~~~~~~s~~~l~~~~~-----~~~~~~~y~~l~~~~  116 (433)
                      ++.+|..++..|+.++++|+|+|++|+||+++|++ |.+..++++.++.||++.+++|.+     +.....+|.+.++.+
T Consensus        44 ~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a  123 (449)
T KOG1304|consen   44 EHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESA  123 (449)
T ss_pred             CCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHH
Confidence            44589999999999999999999999999999999 999999999999999999999863     122346777776655


Q ss_pred             ----------hchhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhcccc
Q 013974          117 ----------FGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRD  186 (433)
Q Consensus       117 ----------~G~~~~~~~~~~~~~~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~pl~~~~~  186 (433)
                                +||++|.+++..+++.++|.|++|++++++.++++.+...     ....+...++.+.....++++++||
T Consensus       124 ~~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~-----~~~~s~~~~i~~~~~~~lll~~Ir~  198 (449)
T KOG1304|consen  124 MEGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHS-----PGVLSVRLYILIQLPPLLLLNLIRN  198 (449)
T ss_pred             HcCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccC-----CCCccHHHHHHHHHHHHHHHHHHHh
Confidence                      4889999999999999999999999999999999988421     1123456677778888999999999


Q ss_pred             CchhhHhHHHHHHHHHHHHHHhhhhccccccccCCCCccccccChhhhhhhHhhhcccccchhhHHhhccchhhhH---H
Q 013974          187 LRVISYLSATGVVATILIVLCVLFLGTIEGIGFHPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFT---K  263 (433)
Q Consensus       187 ~~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~---~  263 (433)
                      +|.++.+|.++.+..+....++.++...+.++.+..+...++.+++..+|+.+|||+|+.++.|++|+||+|++++   +
T Consensus       199 Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P~~F~g~~g  278 (449)
T KOG1304|consen  199 LKILSPFSLFANVFILVGLAIIMYYLVQDLPPTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSMKKPQKFPGPFG  278 (449)
T ss_pred             hHHhhHHHHHHHHHHHHHHHHHHHHHHhccCCccccccccchhhhHHHHHHHHHHhccceEEEehhhcccChhhcCCccc
Confidence            9999999999988877666666666555555555555566789999999999999999999999999999999999   9


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHhhcccchhhhhhcCCCchhhHHHHHHHHHHHhhhhccccccchHHHHHhhcCCC--CC
Q 013974          264 ALITCFALCVLIYGGVAVMGFLMFGQGTLSQITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAG--IS  341 (433)
Q Consensus       264 ~~~~~~~~~~~~y~~~g~~gy~~fg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~--~~  341 (433)
                      ++..++.++.++|..+|++||++||+++++.+++|+|+ ++.....+.+++++++.+||++++|..+.+|+.+.++  +.
T Consensus       279 VLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~-~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~i~~k~~~~  357 (449)
T KOG1304|consen  279 VLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQ-EILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPGIRKKFSEN  357 (449)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCc-cHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHhHHHhcCcc
Confidence            99999999999999999999999999999999999999 7888888999999999999999999999999976555  33


Q ss_pred             chhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHhHHHHHH-HHHhhHHHHHHHhccc---cchhhHhhhhhHhHHHHHH
Q 013974          342 NNYWCFILLRTALVFSSVCAAFLLPFFSLVMALIGSLLSIL-AIIMPSLCFIKILGRK---ATRTQIVSSTAIAVLGVIC  417 (433)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~ia~~~p~~~~v~~l~G~~~~~~-~~ilP~l~~l~~~~~~---~~~~~~~~~~~~~~~g~~~  417 (433)
                      +.++..+.+|..++.++..+|..+|+++.+++++|+++++. ++++|++++++.++++   +.+|+.+.+..++++|++.
T Consensus       358 ~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni~l~~~G~~~  437 (449)
T KOG1304|consen  358 RKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNIVLIVFGVFG  437 (449)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCceehHHHHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999 9999999999997644   4578889999999999999


Q ss_pred             HHHhHHHHHHHH
Q 013974          418 AILGTFSSVAKI  429 (433)
Q Consensus       418 ~v~gt~~~i~~~  429 (433)
                      ++.|||+++.++
T Consensus       438 ~v~Gty~si~~i  449 (449)
T KOG1304|consen  438 FVYGTYTSIKEI  449 (449)
T ss_pred             HHHHHhhhhhcC
Confidence            999999998764

>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>KOG3832 consensus Predicted amino acid transporter [General function prediction only] Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism] Back     alignment and domain information
>PRK15015 carbon starvation protein A; Provisional Back     alignment and domain information
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>PHA02764 hypothetical protein; Provisional Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms] Back     alignment and domain information
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters Back     alignment and domain information
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product Back     alignment and domain information
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query433
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 42.1 bits (98), Expect = 3e-04
 Identities = 60/405 (14%), Positives = 112/405 (27%), Gaps = 155/405 (38%)

Query: 1   MDAKYPFLSE---------------YEKEELDRISR----------TRSSLSEKISFH-K 34
           +   Y FL                 Y  E+ DR+            +R     K+     
Sbjct: 87  LRINYKFLMSPIKTEQRQPSMMTRMYI-EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL 145

Query: 35  QLTGELPIA-HGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVVC---- 89
           +L     +   G             + G G        K   W +L V L + V C    
Sbjct: 146 ELRPAKNVLIDG-------------VLGSG--------KT--WVALDVCLSYKVQCKMDF 182

Query: 90  ---------CYTAS-----LMRYCFESKEGITTYPDIGEAAFGKY--GRLLISVLLYTEL 133
                    C +       L +  ++     T+  D       +    +  +  LL ++ 
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242

Query: 134 YSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHL--FGILTALIVLPTIWLRDLRVIS 191
           Y  C+  ++L   N+                ++     F + +  I+L T   R  +V  
Sbjct: 243 YENCL--LVL--LNV----------Q-----NAKAWNAFNL-SCKILLTT---RFKQVTD 279

Query: 192 YLSATGVVATILIVLCVLFLGTIEGIGFHPT---GQVVKW-------------SGMPFAI 235
           +LSA             + L         P      ++K+             +  P  +
Sbjct: 280 FLSAATT--------THISLDHHSM-TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL 330

Query: 236 GIYG-FCYSGHSVFPNIYQSMADKTKFTKALITCFALCVL-------IYGGVAVMGFLMF 287
            I       G + + N      D  K T  + +     VL       ++  ++V     F
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCD--KLTTIIESSLN--VLEPAEYRKMFDRLSV-----F 381

Query: 288 GQGTLSQITLNMPPHAFASKVAVWT--------TVINPFTKYALL 324
                     ++P    +    +W          V+N   KY+L+
Sbjct: 382 PPSA------HIPTILLSL---IWFDVIKSDVMVVVNKLHKYSLV 417

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query433
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 99.85
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 99.76
4djk_A 511 Probable glutamate/gamma-aminobutyrate antiporter; 99.65
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 98.8
3dh4_A 530 Sodium/glucose cotransporter; membrane protein, sy 98.46
2xq2_A 593 Sodium/glucose cotransporter; transport protein, i 98.01
2a65_A519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 97.98
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
Probab=99.85  E-value=1.6e-18  Score=171.22  Aligned_cols=241  Identities=10%  Similarity=0.103  Sum_probs=171.6

Q ss_pred             CCCCCchHHHHHHHHHHhhccccchhHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhhchhh
Q 013974           42 IAHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYG  121 (433)
Q Consensus        42 ~~~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~g~~~~l~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~~~  121 (433)
                      .+|+.+.++.....+++++|+|++.+|....+.|..+++.+++.++........+.|.+++.|+..+..+..++.+||+.
T Consensus         6 ~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~~~~~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~~~   85 (445)
T 3l1l_A            6 DAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGIAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFGPFL   85 (445)
T ss_dssp             -CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTHHHHHHHHSCHHH
T ss_pred             CCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCchhhHHhHcCChH
Confidence            35679999999999999999999999988888887788888999999999999999999889998899999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhHHHHHHHH
Q 013974          122 RLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVAT  201 (433)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~pl~~~~~~~~l~~~s~~~~~~~  201 (433)
                      +++..+...+........+....++++...++....     ..  ......+..+++.-....+..+...+++.......
T Consensus        86 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~--~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~  158 (445)
T 3l1l_A           86 GYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKD-----PW--VLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLA  158 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGGS-----HH--HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccccc-----cH--HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence            999999998888777788888888888776553110     00  11111112222222333445666666655444333


Q ss_pred             HHHHHHhhhhcc--ccccccCCCC---ccccccChhhhhhhHhhhcccccchhhHHhhccchh-hhHHHHHHHHHHHHHH
Q 013974          202 ILIVLCVLFLGT--IEGIGFHPTG---QVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKALITCFALCVLI  275 (433)
Q Consensus       202 ~~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~~~~~~~~~~~~  275 (433)
                      +...+.+.....  .+..+.....   ...++.++..++....|+|.|.+.+..+.+|+|||+ +.+|++..+..++.++
T Consensus       159 i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~~~~~~~~~~~  238 (445)
T 3l1l_A          159 LIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVC  238 (445)
T ss_dssp             HHHHHHHHHTTSTTCCCCCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhChhhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHHHHHHHHHHHHH
Confidence            332222222221  1111111111   112356788899999999999999999999999996 6899999999999999


Q ss_pred             HHHHHhHHHHhhcc
Q 013974          276 YGGVAVMGFLMFGQ  289 (433)
Q Consensus       276 y~~~g~~gy~~fg~  289 (433)
                      |....+......+.
T Consensus       239 y~~~~~~~~~~~~~  252 (445)
T 3l1l_A          239 YVLSTTAIMGMIPN  252 (445)
T ss_dssp             HHHHHHHHHHHSCT
T ss_pred             HHHHHHHHHhcCCH
Confidence            99988776666553
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query433
d2a65a1 509 Na(+):neurotransmitter symporter homologue LeuT {A 97.97
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.97  E-value=0.0085  Score=57.02  Aligned_cols=101  Identities=15%  Similarity=0.123  Sum_probs=63.1

Q ss_pred             CchHHHHHHHHHHhhccc-cchhHHHH-hhhcHHHHHHHH----HHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhhch
Q 013974           46 CSFTQTIFNGINVMAGVG-LLSTPYTV-KEAGWASLVVLL----LFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGK  119 (433)
Q Consensus        46 ~s~~~~~~~l~~~~iG~G-il~lP~~~-~~~G~~g~~~~l----~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~  119 (433)
                      .|..+.+...++..+|-| +.-.|+-. ++.|...++..+    +.+.=..+.=..+.|.. +....+.+..+.....++
T Consensus         5 ~s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~-~~g~i~~~~~i~~~~~~~   83 (509)
T d2a65a1           5 ATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYG-GAQGHGTTPAIFYLLWRN   83 (509)
T ss_dssp             SCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHH-HTTTCCSHHHHHHHHSCS
T ss_pred             CChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCC-CCCcccHHHHHHHHhccC
Confidence            577899999999999999 77799876 555543343333    33333333334455554 356677888877776654


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 013974          120 YGRLLISVLLYTELYSYCVEFIILEGDN  147 (433)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~y~i~~~~~  147 (433)
                      +....+++...+.++..++.|.+..+-.
T Consensus        84 ~~~~giG~~~~~~~~~i~~yy~vi~~w~  111 (509)
T d2a65a1          84 RFAKILGVFGLWIPLVVAIYYVYIESWT  111 (509)
T ss_dssp             HHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            4334445555555556666666665554