Citrus Sinensis ID: 013979

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430--
MSVTAGVSDTIIAIRDKLRGKIGQTKVKRYWPGKAPEWADDIEEDNDIRMSRAAALDKAFPRKEDSDIGRKDDPRLRRLAESRIDNRDEIRADHRRIRQAEIVSTEEEETRQEGLDMEEEDEEALEERRRRIREKLLQREQEEAALLPEEEEEAVEEEEEEESEYETDSEEEQMGIAMLKPVFVPKSERDTIAERERLEAEEQALEELAKRKLEERKVETKKILVEEVRKDEEIQKNLEMEANIADVDTDDEVNEAEEYEAWKVREIARIKRDREAREAMLKEKEEIEKVRNMTEEERREWERRNPKPAPPPKQKWRFMQKYYHKGAFFQSDAADTAATVRTDEIYHRDFSAPTGEDKMDKTILPKVMQVKHFGRSGRTKWTHLVNEDTTDWNNPWTYNDPLRAKYNAKMAGMNAPIAKPKGSKKLKDWETR
cccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccccHHHHHHcccccHHHcccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccc
cEEEEccccEEEEEHHccccEEcEEEEEEEcccccccccccccccHcccHHHHHHHHHcccccccccccccccHHHHHHHHHHccccHHHHHHHHHcccHHHcccccHHcccccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccccccccHHHHHHHHHcccccEcccHHHHccccccHHHHHcccccccccccccHHHccHHEEEEcccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccc
msvtagvsDTIIAIRDKLRgkigqtkvkrywpgkapewaddieedNDIRMSRAAALdkafprkedsdigrkddprLRRLAESRIDNRDEIRADHRRIRQAeivsteeeetrqegldmeeEDEEALEERRRRIREKLLQREQEEAallpeeeeeaveeeeeeeseyetdseeeqmgiamlkpvfvpkserdTIAERERLEAEEQALEELAKRKLEERKVETKKILVEEVRKDEEIQKNLEMeaniadvdtddevneaEEYEAWKVREIARIKRDREAREAMLKEKEEIEKVRNMTEEERREwerrnpkpapppkqkwRFMQKyyhkgaffqsdaadtaatvrtdeiyhrdfsaptgedkmdktilpkvmqvkhfgrsgrtkwTHLVnedttdwnnpwtyndplrAKYNAKmagmnapiakpkgskklkdwetr
msvtagvsdtiiairdklrgkigqtkvkrywpgkapewaddieedNDIRMSRAaaldkafprkedsdigrkddprlrrlaesridnrdeiradhrrirqaeivsteeeetrqegldmeeedeeALEERRRRIREKLLQREqeeaallpeeeeeaveeeeeeeseyetdseeeqmgiamlkpvfvpkSERDTIAERERLEAEEQALEELakrkleerkvetkkilveevrkdeeiqknlemeaniadvdtddevneaeeyeawkvreiaRIKRDREAREAmlkekeeiekvrnmteeerrewerrnpkpapppkqKWRFMQKYYHKGAFFQSDAADTAATVRTDEiyhrdfsaptgedkmdktilpkvmqvkhfgrsgrtkwthlvnedttdwnnpwtynDPLRAKYNAKMAgmnapiakpkgskklkdwetr
MSVTAGVSDTIIAIRDKLRGKIGQTKVKRYWPGKAPEWADDIEEDNDIRMSRAAALDKAFPRKEDSDIGRKDDPRLRRLAESRIDNRDEIRADHRRIRQAEIVSTEEEETrqegldmeeedeealeerrrrirekllqreqeeaallpeeeeeaveeeeeeeseyetdseeeqMGIAMLKPVFVPKSERDTIaererleaeeqaleelakrkleerkVETKKILVEEVRKDEEIQKNLEMEANIADVDTDDEVNEAEEYEAWKVREIARIKRDREAREAMLKEKEEIEKVRNMTeeerrewerrNPKPAPPPKQKWRFMQKYYHKGAFFQSdaadtaatVRTDEIYHRDFSAPTGEDKMDKTILPKVMQVKHFGRSGRTKWTHLVNEDTTDWNNPWTYNDPLRAKYNAKMAGMNAPIAKPKGSKKLKDWETR
*******SDTIIAIRDKLRGKIGQTKVKRYWPGKAPEWA***************************************************************************************************************************************************************************************************************************YEAWKVREI************************************************WRFMQKYYHKGAFFQSDAADTAATVRTDEIYHRDF**********KTILPKVMQVKHFGRSGRTKWTHLVNEDTTDWNNPWTYNDPLRAKYN*************************
**VTAG*SDTIIAIRDKL****GQTKVKRYWPGKAPEW***********************************************************************************************************************************************************************************************************************NEAEEYEAWKVREIARIKRD***********************************************KYYHKGAFFQSDAA*****V**DEIYHRDFSAPTGEDKMDKTILPKVMQVKHFGRSGRTKWTHLVNEDTTDWNNP*************************************
MSVTAGVSDTIIAIRDKLRGKIGQTKVKRYWPGKAPEWADDIEEDNDIRMSRAAALDKAFPRKEDSDIGRKDDPRLRRLAESRIDNRDEIRADHRRIRQAEIV************************RRRRIREKLLQREQE******************************QMGIAMLKPVFVPKSERDTIAERERLEAEEQALEELAKRKLEERKVETKKILVEEVRKDEEIQKNLEMEANIADVDTDDEVNEAEEYEAWKVREIARIKRDREAREAMLKEKEEIEKVR**********************QKWRFMQKYYHKGAFFQSDAADTAATVRTDEIYHRDFSAPTGEDKMDKTILPKVMQVKHFGRSGRTKWTHLVNEDTTDWNNPWTYNDPLRAKYNAKMAGMNAPIAK*************
*SVTAGVSDTIIAIRDKLRGKIGQTKVKRYWPGKAPEW***********************************PRL****ESRI******************V*************************************************************************AMLKPVFVPKSERDTIAERERLEAEEQALEELAKRKLEERKVETKKILVEEVRKDEEIQKNL******ADVDTDDEVNEAEEYEAWKVREIARIKRDREAREAMLKEKEEIEKVRNMTEEERREWERRNPKPAPPPKQKWRFMQKYYHKGAFFQSDAADTA*TVRTDEIYHRDFSAPTGEDKMDKTILPKVMQVKHFGRSGRTKWT*LVNEDTTDWNNPWTYNDPLRAKYN*KM**********************
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MSVTAGVSDTIIAIRDKLRGKIGQTKVKRYWPGKAPEWADDIEEDNDIRMSRAAALDKAFPRKEDSDIGRKDDPRLRRLAESRIDNRDEIRADHRRIRQAEIVSTEEEETRQEGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLLPEEEEEAVEEEEEEESEYETDSEEEQMGIAMLKPVFVPKSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxETKKILVEEVRKDEEIQKNLEMEANIADVDTDDEVNEAEEYEAWKVREIARxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxNPKPAPPPKQKWRFMQKYYHKGAFFQSDAADTAATVRTDEIYHRDFSAPTGEDKMDKTILPKVMQVKHFGRSGRTKWTHLVNEDTTDWNNPWTYNDPLRAKYNAKMAGMNAPIAKPKGSKKLKDWETR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query432 2.2.26 [Sep-21-2011]
P55080442 Microfibrillar-associated yes no 0.782 0.764 0.447 6e-50
Q5EA98439 Microfibrillar-associated yes no 0.923 0.908 0.405 7e-48
P55081439 Microfibrillar-associated yes no 0.923 0.908 0.412 2e-47
Q9CQU1439 Microfibrillar-associated yes no 0.923 0.908 0.407 2e-46
Q9P7H6355 Uncharacterized protein C yes no 0.490 0.597 0.338 2e-25
Q54SU3460 Protein MFAP1 homolog OS= yes no 0.486 0.456 0.360 1e-23
>sp|P55080|MFAP1_CHICK Microfibrillar-associated protein 1 OS=Gallus gallus GN=MFAP1 PE=2 SV=1 Back     alignment and function desciption
 Score =  198 bits (504), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 167/373 (44%), Positives = 226/373 (60%), Gaps = 35/373 (9%)

Query: 72  DDPRLRRLAESRI-DNRDEIRADHRRIRQAEIVSTEEE-ETRQEGLDMEEEDEEALEER- 128
           +DPRLRRL ++RI ++ +E  A HR+I + E+VS E + E   E   +E ED    EE  
Sbjct: 83  NDPRLRRLLQNRITEDVEERLARHRKIVEPEVVSGESDSEVEGEAWRVEREDTSEEEEEE 142

Query: 129 ---------RRRIREKLLQREQEEAALLPEEEE--EAVEEEEEEESEYETDSEEEQMGIA 177
                    R  +R++  +R+ EE  ++  E+E     E E E E E  TDSE+E     
Sbjct: 143 IDDEEIERWRGMMRQRAQERKTEELEVMELEDEGRSGEESELESEYEEYTDSEDEME--P 200

Query: 178 MLKPVFVPKSERDTIAERERLEAEEQALEELAKRKLEERKVETKKILVEEVRKDEEIQKN 237
            LKPVF+ K +R T+ ERE    +++ LE+ AKR  EER+  T KI+ EE +K+ E  K 
Sbjct: 201 RLKPVFIRKKDRITVQEREAEALKQKELEQEAKRLAEERRKYTLKIVEEEAKKELEENKR 260

Query: 238 LEMEANIADVDT--DDEVNEAEEYEAWKVREIARIKRDREAREAMLKEKEEIEKVRNMTE 295
                ++A +D    D+ N+ EEYEAWKVRE+ RIKRDRE REAM KEK EIE++RN+TE
Sbjct: 261 -----SLAALDALDTDDENDEEEYEAWKVRELKRIKRDREEREAMEKEKAEIERMRNLTE 315

Query: 296 EERREWERRNPKPAP--PPKQKWRFMQKYYHKGAFFQSDAADTAATVRTDEIYHRDFSAP 353
           EERR   R N K       K K++F+QKYYH+GAFF  +          +E+Y RDFSAP
Sbjct: 316 EERRAELRANGKVVTNKAVKGKYKFLQKYYHRGAFFMDE---------DEEVYKRDFSAP 366

Query: 354 TGEDKMDKTILPKVMQVKHFGRSGRTKWTHLVNEDTTDWNNPWTYNDPLRAK-YNAKMAG 412
           T ED  +KTILPKVMQVK+FGRSGRTK+THLV++DTT +++ W        K +  K AG
Sbjct: 367 TLEDHFNKTILPKVMQVKNFGRSGRTKYTHLVDQDTTSFDSAWGQESAQNTKFFKQKAAG 426

Query: 413 MNAPIAKPKGSKK 425
           +     +P   K+
Sbjct: 427 VRDVFERPSAKKR 439
Component of the elastin-associated microfibrils.
Gallus gallus (taxid: 9031)
>sp|Q5EA98|MFAP1_BOVIN Microfibrillar-associated protein 1 OS=Bos taurus GN=MFAP1 PE=2 SV=1 Back     alignment and function description
>sp|P55081|MFAP1_HUMAN Microfibrillar-associated protein 1 OS=Homo sapiens GN=MFAP1 PE=1 SV=2 Back     alignment and function description
>sp|Q9CQU1|MFAP1_MOUSE Microfibrillar-associated protein 1 OS=Mus musculus GN=Mfap1 PE=1 SV=1 Back     alignment and function description
>sp|Q9P7H6|YLK3_SCHPO Uncharacterized protein C1782.03 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1782.03 PE=1 SV=1 Back     alignment and function description
>sp|Q54SU3|MFAP1_DICDI Protein MFAP1 homolog OS=Dictyostelium discoideum GN=mfap1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query432
449521277433 PREDICTED: microfibrillar-associated pro 1.0 0.997 0.870 1e-173
224125976435 predicted protein [Populus trichocarpa] 1.0 0.993 0.850 1e-173
224146051436 predicted protein [Populus trichocarpa] 1.0 0.990 0.827 1e-169
449453822434 PREDICTED: microfibrillar-associated pro 1.0 0.995 0.859 1e-169
357518653436 Microfibrillar-associated protein [Medic 1.0 0.990 0.800 1e-169
225446124436 PREDICTED: microfibrillar-associated pro 1.0 0.990 0.846 1e-163
356512433436 PREDICTED: microfibrillar-associated pro 0.997 0.988 0.842 1e-154
297807805435 hypothetical protein ARALYDRAFT_488655 [ 0.997 0.990 0.754 1e-153
356525201440 PREDICTED: microfibrillar-associated pro 0.997 0.979 0.842 1e-152
227206372435 AT4G08580 [Arabidopsis thaliana] 0.997 0.990 0.749 1e-150
>gi|449521277|ref|XP_004167656.1| PREDICTED: microfibrillar-associated protein 1-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  613 bits (1581), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 377/433 (87%), Positives = 405/433 (93%), Gaps = 1/433 (0%)

Query: 1   MSVTAGVSDTIIAIRDKLRGKIGQTKVKRYWPGKAPEWADDIEEDNDIRMSRAAALDKAF 60
           MSVTAGVSDT+IA+RDKLRGKIGQTKVKRYWPGKAPEWADD +ED DIRM+RAAAL+KAF
Sbjct: 1   MSVTAGVSDTVIAVRDKLRGKIGQTKVKRYWPGKAPEWADDADEDGDIRMARAAALEKAF 60

Query: 61  PRKEDSDIGRKDDPRLRRLAESRIDNRDEIRADHRRIRQAEIVSTEEEETR-QEGLDMEE 119
           PR+EDSDI RKDDPRLRRLAESRIDNR+EIRADHRRIRQAEIVST EEETR QEGLD EE
Sbjct: 61  PRQEDSDISRKDDPRLRRLAESRIDNREEIRADHRRIRQAEIVSTIEEETRRQEGLDAEE 120

Query: 120 EDEEALEERRRRIREKLLQREQEEAALLPEEEEEAVEEEEEEESEYETDSEEEQMGIAML 179
           EDE+ALEERRRRI+EKL QRE EEAA   EEEEE  EEEEEEESEYETDSE+E  GIAM+
Sbjct: 121 EDEDALEERRRRIKEKLRQRELEEAAFPEEEEEEEPEEEEEEESEYETDSEDEPTGIAMV 180

Query: 180 KPVFVPKSERDTIAERERLEAEEQALEELAKRKLEERKVETKKILVEEVRKDEEIQKNLE 239
           KP+FVPKSER+TIAERER+E EE++LEEL KR+LEERK ETK I+VEE+RKDEEIQKNLE
Sbjct: 181 KPIFVPKSERETIAERERIEEEERSLEELRKRRLEERKAETKHIVVEEIRKDEEIQKNLE 240

Query: 240 MEANIADVDTDDEVNEAEEYEAWKVREIARIKRDREAREAMLKEKEEIEKVRNMTEEERR 299
           MEANIADVDTDDE+NEAEEYEAWKVREIARIKRDRE R+AMLKE+EEIEKVRNMTEEERR
Sbjct: 241 MEANIADVDTDDEINEAEEYEAWKVREIARIKRDRELRDAMLKEREEIEKVRNMTEEERR 300

Query: 300 EWERRNPKPAPPPKQKWRFMQKYYHKGAFFQSDAADTAATVRTDEIYHRDFSAPTGEDKM 359
           EWER+NPKPAPPPKQKW+FMQKYYHKGAFFQ DA D A T  +D I+HRDFS+PTGEDKM
Sbjct: 301 EWERKNPKPAPPPKQKWKFMQKYYHKGAFFQEDADDNAGTAGSDNIFHRDFSSPTGEDKM 360

Query: 360 DKTILPKVMQVKHFGRSGRTKWTHLVNEDTTDWNNPWTYNDPLRAKYNAKMAGMNAPIAK 419
           DKTILPKVMQVKHFGRSGRTKWTHLVNEDTTDWNNPWTYNDPLRAKYNAKMAGMNAPI K
Sbjct: 361 DKTILPKVMQVKHFGRSGRTKWTHLVNEDTTDWNNPWTYNDPLRAKYNAKMAGMNAPITK 420

Query: 420 PKGSKKLKDWETR 432
           PKGSKKLKDWE+R
Sbjct: 421 PKGSKKLKDWESR 433

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224125976|ref|XP_002319725.1| predicted protein [Populus trichocarpa] gi|222858101|gb|EEE95648.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224146051|ref|XP_002325861.1| predicted protein [Populus trichocarpa] gi|222862736|gb|EEF00243.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449453822|ref|XP_004144655.1| PREDICTED: microfibrillar-associated protein 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357518653|ref|XP_003629615.1| Microfibrillar-associated protein [Medicago truncatula] gi|355523637|gb|AET04091.1| Microfibrillar-associated protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|225446124|ref|XP_002275399.1| PREDICTED: microfibrillar-associated protein 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356512433|ref|XP_003524923.1| PREDICTED: microfibrillar-associated protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|297807805|ref|XP_002871786.1| hypothetical protein ARALYDRAFT_488655 [Arabidopsis lyrata subsp. lyrata] gi|297317623|gb|EFH48045.1| hypothetical protein ARALYDRAFT_488655 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356525201|ref|XP_003531215.1| PREDICTED: microfibrillar-associated protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|227206372|dbj|BAH57241.1| AT4G08580 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query432
TAIR|locus:2133554435 AT4G08580 "AT4G08580" [Arabido 0.594 0.590 0.667 1.7e-135
TAIR|locus:2170343435 AT5G17900 "AT5G17900" [Arabido 0.594 0.590 0.667 1.2e-134
RGD|1562232439 Mfap1a "microfibrillar-associa 0.543 0.535 0.436 4.8e-58
UNIPROTKB|Q5EA98439 MFAP1 "Microfibrillar-associat 0.543 0.535 0.436 4.8e-58
UNIPROTKB|E2RMM3439 MFAP1 "Uncharacterized protein 0.543 0.535 0.436 4.8e-58
UNIPROTKB|P55081439 MFAP1 "Microfibrillar-associat 0.543 0.535 0.436 4.8e-58
UNIPROTKB|P55080442 MFAP1 "Microfibrillar-associat 0.543 0.531 0.444 4.8e-56
FB|FBgn0035294478 Mfap1 "Microfibril-associated 0.553 0.5 0.420 4.2e-51
WB|WBGene00009671466 mfap-1 [Caenorhabditis elegans 0.560 0.519 0.365 1.4e-44
GENEDB_PFALCIPARUM|MAL13P1.132492 MAL13P1.132 "microfibril-assoc 0.379 0.333 0.401 4.4e-34
TAIR|locus:2133554 AT4G08580 "AT4G08580" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 911 (325.7 bits), Expect = 1.7e-135, Sum P(2) = 1.7e-135
 Identities = 173/259 (66%), Positives = 199/259 (76%)

Query:   175 GIAMLKPVFVPKSERDTIXXXXXXXXXXXXXXXXXXXXXXXXXVETKKILVEEVRKDEEI 234
             GIA++KPVFVPK+ERDTI                         +ETK+I+VEEVRKDEEI
Sbjct:   177 GIALIKPVFVPKAERDTIAERERLEAEEEALEELAKRKLEQRKIETKQIVVEEVRKDEEI 236

Query:   235 QKNLEME-ANIADVDTDDEVNEAEEYEAWKVREIARIKRDREAREAMLKEKEEIEKVRNM 293
             +KN+ +E ANI DV+TDDE+NEAEEYE WK REI RIKR+R+AREAML+E+EEIEK+RNM
Sbjct:   237 RKNILLEEANIGDVETDDELNEAEEYEVWKTREIGRIKRERDAREAMLREREEIEKLRNM 296

Query:   294 TXXXXXXXXXXNPKPAPP-PKQKWRFMQKYYHKGAFFQSXXXXXXXXVRTDEIYHRDFSA 352
             T          NPKP+   PK+KW FMQKYYHKGAFFQ+          TD I+ RDFSA
Sbjct:   297 TEQERRDWERKNPKPSSAQPKKKWNFMQKYYHKGAFFQADPDDEAGSAGTDGIFQRDFSA 356

Query:   353 PTGEDKMDKTILPKVMQVKHFGRSGRTKWTHLVNEDTTDWNNPWTYNDPLRAKYNAKMAG 412
             PTGED++DK+ILPKVMQVKHFGRSGRTKWTHLVNEDTTDW+NPWT NDPLR KYN KMAG
Sbjct:   357 PTGEDRLDKSILPKVMQVKHFGRSGRTKWTHLVNEDTTDWSNPWTSNDPLREKYNKKMAG 416

Query:   413 MNAPIAKPKGSKKLKDWET 431
             M+APIAKPKGSKK+KDWET
Sbjct:   417 MDAPIAKPKGSKKMKDWET 435
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0009507 "chloroplast" evidence=IDA
TAIR|locus:2170343 AT5G17900 "AT5G17900" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
RGD|1562232 Mfap1a "microfibrillar-associated protein 1A" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q5EA98 MFAP1 "Microfibrillar-associated protein 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RMM3 MFAP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P55081 MFAP1 "Microfibrillar-associated protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P55080 MFAP1 "Microfibrillar-associated protein 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
FB|FBgn0035294 Mfap1 "Microfibril-associated protein 1" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
WB|WBGene00009671 mfap-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
GENEDB_PFALCIPARUM|MAL13P1.132 MAL13P1.132 "microfibril-associated protein homologue, putative" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5EA98MFAP1_BOVINNo assigned EC number0.40540.92360.9088yesno
Q9CQU1MFAP1_MOUSENo assigned EC number0.40760.92360.9088yesno
P55081MFAP1_HUMANNo assigned EC number0.41210.92360.9088yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pm.C_LG_XIII0270
hypothetical protein (436 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.XIII.692.1
hypothetical protein (297 aa)
   •• • 0.496

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query432
pfam06991277 pfam06991, Prp19_bind, Splicing factor, Prp19-bind 3e-81
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 8e-07
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 1e-05
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 3e-05
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 1e-04
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 1e-04
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-04
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 2e-04
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-04
COG2268548 COG2268, COG2268, Uncharacterized protein conserve 2e-04
COG1269 660 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase su 3e-04
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 4e-04
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 5e-04
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 5e-04
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 7e-04
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 8e-04
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 9e-04
PRK108111068 PRK10811, rne, ribonuclease E; Reviewed 9e-04
COG0419 908 COG0419, SbcC, ATPase involved in DNA repair [DNA 9e-04
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 0.001
pfam01496 707 pfam01496, V_ATPase_I, V-type ATPase 116kDa subuni 0.001
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 0.002
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.002
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.002
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.002
pfam02463 1162 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain 0.002
PRK12329449 PRK12329, nusA, transcription elongation factor Nu 0.002
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 0.003
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 0.003
COG1269 660 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase su 0.003
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 0.004
PRK05771 646 PRK05771, PRK05771, V-type ATP synthase subunit I; 0.004
PHA03346520 PHA03346, PHA03346, US22 family homolog; Provision 0.004
TIGR03185 650 TIGR03185, DNA_S_dndD, DNA sulfur modification pro 0.004
>gnl|CDD|219256 pfam06991, Prp19_bind, Splicing factor, Prp19-binding domain Back     alignment and domain information 
 Score =  251 bits (642), Expect = 3e-81
 Identities = 163/287 (56%), Positives = 198/287 (68%), Gaps = 14/287 (4%)

Query: 143 EAALLPEEEEEAVEEEEEEESEYETDSEEEQMGIAMLKPVFVPKSERDTIAERERLEAEE 202
           E  +L  EEE+   EEEEEESE E +++ E      LKPVF  K +R TI ERER  A+E
Sbjct: 1   ETEVLELEEEDESGEEEEEESEEEEETDSEDDMEPRLKPVFTRKKDRITIQEREREAAKE 60

Query: 203 QALEELAKRKLEERKVETKKILVEEVRKDEEIQKN-LEMEANIADVDTDDEVNEAEEYEA 261
           +ALEE AKRK EERK ET KI+ EEV+K+ E++K    +EANI DVDTDDE NE EEYEA
Sbjct: 61  KALEEEAKRKAEERKRETLKIVEEEVKKELELKKRNTLLEANIDDVDTDDE-NEEEEYEA 119

Query: 262 WKVREIARIKRDREAREAMLKEKEEIEKVRNMTEEERREWERRNPKP--APPPKQKWRFM 319
           WK+RE+ RIKRDRE RE M +EK EIEK+RNMTEEERR   R+NPK       K K++F+
Sbjct: 120 WKLRELKRIKRDREEREEMEREKAEIEKMRNMTEEERRAELRKNPKVSTNKAKKGKYKFL 179

Query: 320 QKYYHKGAFFQSDAADTAATVRTDEIYHRDFSAPTGEDKMDKTILPKVMQVKHFGRSGRT 379
           QKYYH+GAFFQ +          DE+  RDFS  T ED  DKTILPKVMQVK+FGR+GRT
Sbjct: 180 QKYYHRGAFFQDE---------EDEVLKRDFSEATLEDHFDKTILPKVMQVKNFGRAGRT 230

Query: 380 KWTHLVNEDTTDWNNPWTYNDPLRAKY-NAKMAGMNAPIAKPKGSKK 425
           K+THLVNEDTT +++ W     L  K+ N +  GM +   KP G K+
Sbjct: 231 KYTHLVNEDTTKFDSAWYSESNLNLKFSNKRAGGMRSVFDKPLGKKR 277

This family represents the C-terminus (approximately 300 residues) of proteins that are involved as binding partners for Prp19 as part of the nuclear pore complex. The family in Drosophila is necessary for pre-mRNA splicing, and the human protein has been found in purifications of the spliceosome. In the past this family was thought, erroneously, to be associated with microfibrillin. Length = 277
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain Back     alignment and domain information
>gnl|CDD|237063 PRK12329, nusA, transcription elongation factor NusA; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated Back     alignment and domain information
>gnl|CDD|223052 PHA03346, PHA03346, US22 family homolog; Provisional Back     alignment and domain information
>gnl|CDD|234141 TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 432
KOG1425430 consensus Microfibrillar-associated protein MFAP1 100.0
PF06991276 Prp19_bind: Splicing factor, Prp19-binding domain; 100.0
PF06991276 Prp19_bind: Splicing factor, Prp19-binding domain; 90.46
PF04889244 Cwf_Cwc_15: Cwf15/Cwc15 cell cycle control protein 86.95
>KOG1425 consensus Microfibrillar-associated protein MFAP1 [Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=3.9e-126  Score=941.50  Aligned_cols=417  Identities=52%  Similarity=0.771  Sum_probs=364.1

Q ss_pred             CCcccc-cccchhhhhcccccccCccceeeecCCCCCCCCCCccchhHHHHhhhhhhcccCCCCccccCCCCCChHHHHH
Q 013979            1 MSVTAG-VSDTIIAIRDKLRGKIGQTKVKRYWPGKAPEWADDIEEDNDIRMSRAAALDKAFPRKEDSDIGRKDDPRLRRL   79 (432)
Q Consensus         1 Ms~~~~-tagavpv~nekge~~m~kvKV~RY~aGKrPdyA~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~DpRLrRl   79 (432)
                      ||+++| .-.||||+ +||+++|+||||+||||||+|+||+...+|+++.++.......++|..+..+....+|||||||
T Consensus         1 ms~~~~~~~saipvr-ekg~~~m~kvkv~ryv~gk~peya~sseed~d~~~~~~~~~~~a~~ee~~~~~~~~ddprlrrl   79 (430)
T KOG1425|consen    1 MSVTASVIQSAIPVR-EKGEGSMQKVKVRRYVSGKAPEYARSSEEDDDVDFIKDRKRDRAEPEEDEEDVARIDDPRLRRL   79 (430)
T ss_pred             CCccccccccccchh-hhcccccceeeeeeecCCCCcccccccccchhhhHHHHHHHHhcCcchhhcccccccCcccccc
Confidence            787763 44699999 9999999999999999999999999766666666666666667888888888889999999999


Q ss_pred             Hhhhc--ccch-hhhhhhhccccccccccchhhh--hccCCCcccccHHHHHHHHHHHHHHHHhhHHHHHhcCchhhhhh
Q 013979           80 AESRI--DNRD-EIRADHRRIRQAEIVSTEEEET--RQEGLDMEEEDEEALEERRRRIREKLLQREQEEAALLPEEEEEA  154 (432)
Q Consensus        80 ~~~~~--~~~~-~~~~~~R~i~e~ev~~~~~~~~--~~e~~~eee~De~~~e~RR~~iR~ral~r~~EEe~~~~~~ee~e  154 (432)
                      .++..  ++++ ++.++||.|++|||+.+.+++.  ..+++..++.|++++++||.|||.|++++.+++..+++.+.+.+
T Consensus        80 ~~~~~~~e~~E~e~~e~hr~i~e~Ei~~~~eee~~~~n~~~~~~e~d~~e~E~rr~~~r~r~~qr~~ee~~v~~~e~E~e  159 (430)
T KOG1425|consen   80 PQRPVRSEDVEGERSERHREIDEPEISDEEEEEGSIRNESERDEETDEEELERRREMLRSRNLQRINEEQEVLNSEDEYE  159 (430)
T ss_pred             cccccccchhhhhhhhhhhcccchhhcccHhhhhhhcccccccccCcHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhcc
Confidence            99876  6777 7899999999999998655554  22455667889999999999999999999888866666555444


Q ss_pred             ---hhhhhhhcccccCCchhhhhcccccccccccCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 013979          155 ---VEEEEEEESEYETDSEEEQMGIAMLKPVFVPKSERDTIAERERLEAEEQALEELAKRKLEERKVETKKILVEEVRK-  230 (432)
Q Consensus       155 ---~~eeeeeeSe~es~SEeE~~~~~~lKPVFV~K~~R~Ti~e~e~~e~ee~~~e~~~~~~~eeRk~et~~lv~eei~k-  230 (432)
                         ++++++++|+++|||+++  ..|+||||||+|.+|.||++++..++.+..+++.+++.+++||++|.+||.+++.+ 
T Consensus       160 ~~eeseee~Se~ee~tdsEdD--~~prlkpvfvrkrdR~tlqe~e~e~~k~k~le~eakr~aEerk~~T~q~V~Ee~~k~  237 (430)
T KOG1425|consen  160 SDEESEEEESESEEETDSEDD--MEPRLKPVFVRKRDRTTLQEREREAKKEKNLEKEAKRDAEERKRETLQIVEEEVIKK  237 (430)
T ss_pred             cchhhhccccccccccccccc--cccccccceehhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               233333345555666665  45999999999999999999999999999999999999999999999999999985 


Q ss_pred             HHHHHHhhhhhhccCCCCCccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCC
Q 013979          231 DEEIQKNLEMEANIADVDTDDEVNEAEEYEAWKVREIARIKRDREAREAMLKEKEEIEKVRNMTEEERREWERRNPKPAP  310 (432)
Q Consensus       231 e~~~~~~~~~e~~~~~vDddDeld~E~EyeaWKlRELkRiKRdRe~re~~ekEk~EieRrrnmteEER~~~~~~~~k~~~  310 (432)
                      ++..++....++.+++|+|||++|++.||+|||||||+||||||++++++++|+++|+++||||++||+++++.||++++
T Consensus       238 El~~k~~~~~~a~l~dv~tdDein~~~eYEaWKlRelkR~KRdRe~reeleREK~eIek~rnMteEERr~~lrknpkv~t  317 (430)
T KOG1425|consen  238 ELEEKKTKNNEALLNDVDTDDEINEEEEYEAWKLRELKRIKRDREEREELEREKAEIEKMRNMTEEERRAELRKNPKVST  317 (430)
T ss_pred             HHHhhccccchHHhhcccccccCChHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhCccccc
Confidence            44444444557889999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             C--CcchhhhHHhhhcccccccccchhhhhhccccccccccCCCCCcccccccccCchhhhhcccCcCCCCcccccCCcc
Q 013979          311 P--PKQKWRFMQKYYHKGAFFQSDAADTAATVRTDEIYHRDFSAPTGEDKMDKTILPKVMQVKHFGRSGRTKWTHLVNED  388 (432)
Q Consensus       311 ~--~Kgk~~FmQKYYHkGAFf~D~~d~~~~~~~~e~i~kRDfs~pt~eD~~dk~~LPkvMQvknfGk~GrTKyThL~deD  388 (432)
                      +  .||||+||||||||||||+|.++        +.|||||||+||++|+|||+|||||||||||||+|||||||||+||
T Consensus       318 nk~~KgkykFLQKYYHkGAFf~de~d--------e~V~KRDfseaT~ed~~dKtILPKvMQVKnFgragrTK~THLvneD  389 (430)
T KOG1425|consen  318 NKAKKGKYKFLQKYYHKGAFFLDEDD--------EIVLKRDFSEATLEDHLDKTILPKVMQVKNFGRAGRTKWTHLVNED  389 (430)
T ss_pred             ccccchhHHHHHHHHhccccccCcch--------hhHHhhccccccccccccccccccceeecccccccccceeeecccc
Confidence            5  89999999999999999999762        3499999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCchhHHhhh-hhhcCCCCCCCCCccccccccc
Q 013979          389 TTDWNNPWTYNDPLRAKYN-AKMAGMNAPIAKPKGSKKLKDW  429 (432)
Q Consensus       389 Tt~~~~~w~~~~~~~~k~~-~k~~g~~~~f~rP~~~k~~~~~  429 (432)
                      ||.|+|||+++++++.||+ .++||+.++|++|..||++ +|
T Consensus       390 TT~~~s~W~~~~~~n~kf~~~raGg~r~~fd~p~sKKrK-~~  430 (430)
T KOG1425|consen  390 TTDFDSPWYSESNLNLKFNKKRAGGDRPVFDRPLSKKRK-TW  430 (430)
T ss_pred             ccccCCcccCCCchHhHHHHHhccCCccccCCccchhcc-CC
Confidence            9999999999999999997 5888999999999976654 44

>PF06991 Prp19_bind: Splicing factor, Prp19-binding domain; InterPro: IPR009730 This entry represents the C terminus (approximately 300 residues) of eukaryotic micro-fibrillar-associated protein 1, which is a component of elastin-associated microfibrils in the extracellular matrix [] Back     alignment and domain information
>PF06991 Prp19_bind: Splicing factor, Prp19-binding domain; InterPro: IPR009730 This entry represents the C terminus (approximately 300 residues) of eukaryotic micro-fibrillar-associated protein 1, which is a component of elastin-associated microfibrils in the extracellular matrix [] Back     alignment and domain information
>PF04889 Cwf_Cwc_15: Cwf15/Cwc15 cell cycle control protein; InterPro: IPR006973 This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query432
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 8e-11
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-09
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 3e-09
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 1e-08
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 3e-08
2zuo_A861 MVP, major vault protein; repeat domains, protein- 9e-08
2zuo_A861 MVP, major vault protein; repeat domains, protein- 4e-07
2zuo_A861 MVP, major vault protein; repeat domains, protein- 4e-06
2zuo_A861 MVP, major vault protein; repeat domains, protein- 8e-06
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 7e-07
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
2ycu_A995 Non muscle myosin 2C, alpha-actinin; motor protein 1e-05
2a6h_D 1524 DNA-directed RNA polymerase beta' chain; RNA polym 8e-05
2i1j_A575 Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, 8e-04
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
 Score = 63.2 bits (154), Expect = 8e-11
 Identities = 34/238 (14%), Positives = 74/238 (31%), Gaps = 16/238 (6%)

Query: 76   LRRLAESRIDNRDEIRADHRRIRQAEIVSTEEEETRQEGLDMEEEDEEALEERRRRIREK 135
            L R    R   +  +R     I Q  +            L      +        +   K
Sbjct: 848  LLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELK 907

Query: 136  LLQREQEEAALLPEEE---EEAVEEEEEEESEYETDSEEEQMGIAMLKPVFVPKSERDTI 192
             L+ E        +     E  + + + +  E   + +     +  L+      +     
Sbjct: 908  KLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLE-----ITYSTET 962

Query: 193  AERERLEAEEQALEELAKRKLEERKVETKKI--LVEEVRKDEEIQKNLEMEANIADVDTD 250
             +        +  EE AK          ++I  L +E+ + +  +K +E  A+    +T+
Sbjct: 963  EKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETE 1022

Query: 251  DEVNEAEEYEAWKVREIARIKRDREAREAMLKE------KEEIEKVRNMTEEERREWE 302
              V+E +E       E   + R    +   + E       EE +++     +ER  ++
Sbjct: 1023 QLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLRYQ 1080
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 Back     alignment and structure
>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2 PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D* 2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D* 3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D Length = 1524 Back     alignment and structure
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A Length = 575 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00