Citrus Sinensis ID: 013991

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430--
Protein Sequence
MAAGEEKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWFVKLWFV
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccccHHHHHHHHHHHcHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHcHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccHHHcccHHHHHHHHccccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccHHHcHHHHEHHHHHHHHHHHHcHHHHHHHHccHcccccEccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcHHHccccccccHcccHHHHHHHHccccccccccccccccccHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHcccccccEEEEEEEEEc
Coil and Loop (DISEMBL)
maageeklrepflknekryyencpgckvdqlkdtksglpitELFSIWIIVLCtalpisslfpfLYFMIKDFQIAKREedigsyagyvgssfmFGRALTSVFWGLvadrygrkpviiMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLiigpalggflaqpaekypnlfsseslfgkfpyflpclcISLFAFGVTIAafwlpetlhrhnddddscdvSYDALESASAevkeeegreatpkksllknwplmSSIIVYCVFSLHDMAYSEIFSLWanspkklgglnystQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVltiplltsypyIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWFVKLWFV
Flexible Loop (DISEMBL)
maageeklrepflknekRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESAsaevkeeegreatpkksllknwplMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWFVKLWFV
Low Complexity Region (SEG)
MAAGEEKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTawgigliigpalggflaQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNddddscdvsydALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWFVKLWFV
Disordered region (IsUnstruct)
****************KRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHR***********************************LLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWFVKLWF*
Disordered Region (DISOPRED)
*****************************************ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDAL************REATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWFVKLWFV
Disordered Region (DISEMBL)
MAAGEEKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDAL******************KSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWFVKLWFV
Disordered Region (DISPRO)
********REPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRH********************************KSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWFVKLWFV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAAGEEKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWFVKLWFV
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	432	2.2.26 [Sep-21-2011]
Q94BZ1	478	Protein ZINC INDUCED FACI	no	no	0.912	0.824	0.692	1e-160
Q8RWN2	486	Protein ZINC INDUCED FACI	no	no	0.939	0.835	0.644	1e-149
Q3EAQ5	484	Probable peptide/nitrate	no	no	0.893	0.797	0.599	1e-135
P25351	611	Uncharacterized membrane	yes	no	0.504	0.356	0.324	1e-28
B4EYY4	402	Multidrug resistance prot	yes	no	0.407	0.437	0.281	5e-10
A8GCZ5	411	Multidrug resistance prot	no	no	0.351	0.369	0.303	2e-09
D8MQN9	411	Multidrug resistance prot	no	no	0.451	0.474	0.269	3e-09
P0A4K5	399	Multi-drug resistance eff	yes	no	0.335	0.363	0.298	1e-08
P0A4K4	399	Multi-drug resistance eff	yes	no	0.335	0.363	0.298	1e-08
P02980	401	Tetracycline resistance p	yes	no	0.421	0.453	0.248	4e-08

>sp|Q94BZ1|ZIFL1_ARATH Protein ZINC INDUCED FACILITATOR-LIKE 1 OS=Arabidopsis thaliana GN=ZIFL1 PE=2 SV=1

 Score =  565 bits (1455), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 275/397 (69%), Positives = 323/397 (81%), Gaps = 3/397 (0%)

Query: 16  EKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAK 75
           EK ++E+C GCKVDQ+K  + G P  ELF++WIIVLCTALPISSLFPFLYFMI DF IAK
Sbjct: 11  EKNFHEDCSGCKVDQMKRLRRGFPFWELFTVWIIVLCTALPISSLFPFLYFMIDDFNIAK 70

Query: 76  REEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF 135
           +EEDIG YAG+VG SFM GRA TSV WGLVADRYGRKPVI++GTASVV+FNTLFGLS+NF
Sbjct: 71  KEEDIGFYAGFVGCSFMLGRAFTSVAWGLVADRYGRKPVILIGTASVVVFNTLFGLSLNF 130

Query: 136 WMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195
           WMA++TRF LGS NGLLGPIKAYA EIFR+E+Q L LS VSTAWGIGLIIGPA+GGFLAQ
Sbjct: 131 WMAIITRFCLGSFNGLLGPIKAYAMEIFRDEYQGLALSAVSTAWGIGLIIGPAIGGFLAQ 190

Query: 196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYD 255
           PA++YP+LFS +S+FGKFP+FLPCL IS+FAF VTI +  +PETLH H  +DD    SYD
Sbjct: 191 PAKQYPSLFSQDSIFGKFPFFLPCLAISVFAFLVTIVSSRIPETLHNHKFNDDE---SYD 247

Query: 256 ALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKL 315
           AL+  S + +  +  E   K SLL NWPL+SSIIVYCVFSLHDMAY+EIFSLWANSP+K 
Sbjct: 248 ALKDLSDDPESNKVAERNGKSSLLNNWPLISSIIVYCVFSLHDMAYTEIFSLWANSPRKY 307

Query: 316 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIA 375
           GGL YST  VG VLA +GF LL+FQLSLY + ER+LGPI+V RI+G L + +L+ YP IA
Sbjct: 308 GGLGYSTADVGSVLAFSGFGLLIFQLSLYSYAERLLGPIIVTRISGSLAMVVLSCYPLIA 367

Query: 376 MLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAV 412
            LSG  L   +  ASV K++L  S ITGLFILQN+AV
Sbjct: 368 KLSGLALTVTVTSASVAKSVLGTSAITGLFILQNKAV 404

Major facilitator superfamily (MFS) transporter probably involved in 2,4-dichlorophenoxyacetic acid (2,4-D) export.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8RWN2|ZIF1_ARATH Protein ZINC INDUCED FACILITATOR 1 OS=Arabidopsis thaliana GN=ZIF1 PE=1 SV=2

 Score =  527 bits (1358), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 265/411 (64%), Positives = 319/411 (77%), Gaps = 5/411 (1%)

Query: 6   EKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLY 65
           E+ +E  L+ ++ Y++ CPGCKV+Q+K  + G P  EL  +WIIVL T+LPISSL+PFLY
Sbjct: 3   EEYKEALLE-KQNYHDGCPGCKVEQMKQLRRGYPYLELSFVWIIVLSTSLPISSLYPFLY 61

Query: 66  FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF 125
           +MI+DF +AK E+DIG YAG+VG SFM GRALTSVFWG+VADRYGRKP+I++GT S+ IF
Sbjct: 62  YMIEDFGVAKTEKDIGFYAGFVGCSFMLGRALTSVFWGIVADRYGRKPIILLGTISIAIF 121

Query: 126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLII 185
           N LFGLS NFWMA+ TRFLLGS N LLG +KAYA EIFR+E+QA  +S VSTAWGIGLII
Sbjct: 122 NALFGLSSNFWMAIGTRFLLGSFNCLLGTMKAYASEIFRDEYQATAMSAVSTAWGIGLII 181

Query: 186 GPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHND 245
           GPALGGFLAQPA+KYPN+FS ESLFG+F Y LPC  IS FA  VT+   ++PETLH H  
Sbjct: 182 GPALGGFLAQPADKYPNVFSQESLFGRFRYALPCFTISAFALLVTVLCCFIPETLHNHKL 241

Query: 246 DDDSCDVSYDALESASAEVKEEEGR----EATPKKSLLKNWPLMSSIIVYCVFSLHDMAY 301
           D  S D SYD LE+AS E     G+    E    +SLLKNWPLMSSIIVYCV  LHD AY
Sbjct: 242 DSLSHDDSYDILEAASHESSPSTGKAGKNERKASQSLLKNWPLMSSIIVYCVLCLHDTAY 301

Query: 302 SEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG 361
           SEIF+LWANSP+K GGL+YST  VG VLAI+G  L  FQ+ +YP  E++LGP++V R AG
Sbjct: 302 SEIFALWANSPRKYGGLSYSTNEVGTVLAISGLGLFSFQVFVYPLAEKLLGPVLVTRYAG 361

Query: 362 VLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAV 412
            L IP+  SYP+IA LSG  L+ +LNCAS++ N+LSVS ITGL ILQNRAV
Sbjct: 362 ALMIPIQMSYPFIAGLSGLSLSLMLNCASILINVLSVSAITGLLILQNRAV 412

Major facilitator superfamily (MFS) transporter involved in zinc tolerance by participating in vacuolar sequestration of zinc.

Arabidopsis thaliana (taxid: 3702)

>sp|Q3EAQ5|PTR36_ARATH Probable peptide/nitrate transporter At3g43790 OS=Arabidopsis thaliana GN=ZIFL2 PE=2 SV=2

 Score =  482 bits (1240), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 238/397 (59%), Positives = 303/397 (76%), Gaps = 11/397 (2%)

Query: 21  ENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDI 80
           E+CPGC +D+ K  + G+P   L  IW++ LCTALPISSLFP++YFMI+DF IAK+EEDI
Sbjct: 15  EDCPGCIIDRTKQQQRGVPYLHLSFIWLVSLCTALPISSLFPYIYFMIRDFHIAKQEEDI 74

Query: 81  GSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVL 140
           G YAG+VGSSFM GRALTS+FWG +ADRYGRKP+I++GT SV+IFNTLFGLS +FW+A+ 
Sbjct: 75  GFYAGFVGSSFMIGRALTSIFWGKLADRYGRKPIILIGTFSVIIFNTLFGLSTSFWLAIS 134

Query: 141 TRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY 200
            RFLLG  N LLG I+AYA E+  EE+ AL LS VST+ GIGLI+GPA+GG+LAQPAEKY
Sbjct: 135 VRFLLGCFNCLLGVIRAYASEVVSEEYNALSLSVVSTSRGIGLILGPAIGGYLAQPAEKY 194

Query: 201 PNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESA 260
           PN+FS  S+FG+FPYFLP L IS++A  V IA +WLPETLH        C ++   L   
Sbjct: 195 PNIFSQSSVFGRFPYFLPSLVISVYATAVLIACWWLPETLHTR------CRIAQGRLNPT 248

Query: 261 SAEVKEEEG-----REATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKL 315
                E  G     ++   K SLL+N PLM+ IIVYCVFSL ++AY+EIFSLWA S +  
Sbjct: 249 ELNDDESRGGGLDEQKIINKPSLLRNRPLMAIIIVYCVFSLQEIAYNEIFSLWAVSDRSY 308

Query: 316 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIA 375
           GGL++S+Q VGEVLAI+G  LLVFQL +YP LE+ +G + V R++ VL IPLL+ YPYIA
Sbjct: 309 GGLSFSSQDVGEVLAISGLGLLVFQLLVYPPLEKSVGLLAVIRLSAVLLIPLLSCYPYIA 368

Query: 376 MLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAV 412
           +LSG  L  ++NCAS++KN LS+S++TGLFI+ N+AV
Sbjct: 369 LLSGVTLHLVINCASIIKNALSISLVTGLFIMLNKAV 405

Arabidopsis thaliana (taxid: 3702)

>sp|P25351|YCR3_YEAST Uncharacterized membrane protein YCR023C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YCR023C PE=1 SV=2

 Score =  127 bits (320), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 120/225 (53%), Gaps = 7/225 (3%)

Query: 31  LKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSS 90
            K+   G P  +L  + ++     +  SSLFP++YFM++DF IA  +  +  Y+GY+ SS
Sbjct: 8   FKEQMDGFPWVQLVVVSLVRFSEPIAFSSLFPYVYFMVRDFNIAPNDAQVSKYSGYLSSS 67

Query: 91  FMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNG 150
           F   + +++  WG  ++++GRK  +  G     +   + G S NF+ A++ R L+G LNG
Sbjct: 68  FALCQVISAYHWGRFSEKHGRKITLTCGLIGTSVSLLILGFSRNFYQALVARSLMGLLNG 127

Query: 151 LLGPIKAYACEIFRE-EHQALGLSTVSTAWGIGLIIGPALGGFLA---QPAEKYPNLFS- 205
            +G I+    EI  E +HQAL  ST+   +  G ++GP +GGFL        + P  F  
Sbjct: 128 NVGVIRTIIGEIATERKHQALAFSTMPLLFQFGAVVGPMIGGFLVFRDGTMNEVPLWFPH 187

Query: 206 -SESLFGKFPYFLPCLCISLF-AFGVTIAAFWLPETLHRHNDDDD 248
            ++ +   +PY LP + + +F  FG+T A  +L ET     D  D
Sbjct: 188 FAKRIIRSYPYALPNVVVCMFLMFGLTNATLFLEETHPAFKDRRD 232

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|B4EYY4|MDTG_PROMH Multidrug resistance protein MdtG OS=Proteus mirabilis (strain HI4320) GN=mdtG PE=3 SV=1

 Score = 66.2 bits (160), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 83/185 (44%), Gaps = 9/185 (4%)

Query: 42  ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGS-SFMFGRALTSV 100
            L+ +W     T    S + PFL   +++  I K  E +  + G   S +F+F  A+ + 
Sbjct: 13  NLYIVWFGCFLTGAGFSLIMPFLPLYVEELGI-KDHESLNLWTGVAFSITFLF-SAIAAP 70

Query: 101 FWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYAC 160
           FWG ++DR GRK +++     + I   L G + N W  ++ R LLG L G +    A   
Sbjct: 71  FWGKLSDRKGRKLMLLRSALGMAIVMVLIGFAQNIWQLLILRALLGVLGGFVPNANALIA 130

Query: 161 EIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCL 220
                +     L T+ST    G +IGP +GG LA      P  F + ++         C 
Sbjct: 131 TQVPVKKSGWALGTLSTGAVSGALIGPLIGGILADLYGLRPVFFITAAV------LFICF 184

Query: 221 CISLF 225
            ++LF
Sbjct: 185 IVTLF 189

Proteus mirabilis (strain HI4320) (taxid: 529507)

>sp|A8GCZ5|MDTG_SERP5 Multidrug resistance protein MdtG OS=Serratia proteamaculans (strain 568) GN=mdtG PE=3 SV=1

 Score = 64.3 bits (155), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 72/155 (46%), Gaps = 3/155 (1%)

Query: 42  ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGS-SFMFGRALTSV 100
            LF  W+    T    S + PFL   ++   +    + +  ++G V S +F+F  A+ S 
Sbjct: 13  NLFVAWLGCFLTGAAFSLIMPFLPLYVETLGVTG-HQALNMWSGLVFSITFLFS-AIASP 70

Query: 101 FWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYAC 160
           FWG +ADR GRK +++     + I   L G++ N W  +  R +LG L G +    A   
Sbjct: 71  FWGGLADRRGRKLMLLRSALGMSIVMLLMGMAQNIWQFLALRAVLGLLGGFIPNANALIA 130

Query: 161 EIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195
                      L T+ST    G +IGP +GG LA 
Sbjct: 131 TQVPRNRSGWALGTLSTGGVSGALIGPLIGGLLAD 165

Serratia proteamaculans (strain 568) (taxid: 399741)

>sp|D8MQN9|MDTG_ERWBE Multidrug resistance protein MdtG OS=Erwinia billingiae (strain Eb661) GN=mdtG PE=3 SV=1

 Score = 63.5 bits (153), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 85/204 (41%), Gaps = 9/204 (4%)

Query: 42  ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGS-SFMFGRALTSV 100
            LF  W     T +  S + PFL   ++   +      +  ++G V S +F+F  A+ S 
Sbjct: 16  NLFVAWCGCFLTGIAFSLVMPFLPLYVELLGVTD-PHSLNMWSGLVFSITFLFS-AIASP 73

Query: 101 FWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYAC 160
           FWG +ADR GRK +++     + +   L GL+ + W  +  R +LG L G +    A   
Sbjct: 74  FWGGLADRKGRKIMLLRSALGMSVVMVLMGLATSIWQFLALRAVLGLLGGFVPNANALIA 133

Query: 161 EIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCL 220
                      L  +ST    G +IGP +GG LA      P  F + S+         C 
Sbjct: 134 TQVPRNKSGWALGWLSTGAVSGALIGPLIGGLLADSFGLRPVFFITASV------LFVCF 187

Query: 221 CISLFAFGVTIAAFWLPETLHRHN 244
            ++LFA           + LH H 
Sbjct: 188 IMTLFAVREEFVPVQKKDMLHAHQ 211

Erwinia billingiae (strain Eb661) (taxid: 634500)

>sp|P0A4K5|PMRA_STRR6 Multi-drug resistance efflux pump PmrA OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=pmrA PE=3 SV=1

 Score = 61.2 bits (147), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 72/151 (47%), Gaps = 6/151 (3%)

Query: 47  WIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVA 106
           W     T   IS + PF+   +++  +  ++  +  YAG   S      AL S  WG++A
Sbjct: 14  WFGNFLTGASISLVVPFMPIFVENLGVGSQQ--VAFYAGLAISVSAISAALFSPIWGILA 71

Query: 107 DRYGRKPVIIMGTASVVIFNTLFGLSV--NFWMAVLTRFLLGSLNGLLGPIKAYACEIFR 164
           D+YGRKP++I    ++ I  T+ GL+   N +  +  R L G   G +    A       
Sbjct: 72  DKYGRKPMMIRAGLAMTI--TMGGLAFVPNIYWLIFLRLLNGVFAGFVPNATALIASQVP 129

Query: 165 EEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195
           +E     L T+ST    G + GP +GGF+A+
Sbjct: 130 KEKSGSALGTLSTGVVAGTLTGPFIGGFIAE 160

Efflux pump for various substrates.

Streptococcus pneumoniae (strain ATCC BAA-255 / R6) (taxid: 171101)

>sp|P0A4K4|PMRA_STRPN Multi-drug resistance efflux pump PmrA OS=Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) GN=pmrA PE=3 SV=1

 Score = 61.2 bits (147), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 72/151 (47%), Gaps = 6/151 (3%)

Query: 47  WIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVA 106
           W     T   IS + PF+   +++  +  ++  +  YAG   S      AL S  WG++A
Sbjct: 14  WFGNFLTGASISLVVPFMPIFVENLGVGSQQ--VAFYAGLAISVSAISAALFSPIWGILA 71

Query: 107 DRYGRKPVIIMGTASVVIFNTLFGLSV--NFWMAVLTRFLLGSLNGLLGPIKAYACEIFR 164
           D+YGRKP++I    ++ I  T+ GL+   N +  +  R L G   G +    A       
Sbjct: 72  DKYGRKPMMIRAGLAMTI--TMGGLAFVPNIYWLIFLRLLNGVFAGFVPNATALIASQVP 129

Query: 165 EEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195
           +E     L T+ST    G + GP +GGF+A+
Sbjct: 130 KEKSGSALGTLSTGVVAGTLTGPFIGGFIAE 160

Efflux pump for various substrates.

Streptococcus pneumoniae (taxid: 1313)

>sp|P02980|TCR2_ECOLX Tetracycline resistance protein, class B OS=Escherichia coli GN=tetA PE=1 SV=1

 Score = 59.7 bits (143), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 95/209 (45%), Gaps = 27/209 (12%)

Query: 48  IIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD 107
           +I L  A+ I  + P L  ++++F      EDI ++ G + + +   + + + + G ++D
Sbjct: 10  VITLLDAMGIGLIMPVLPTLLREF---IASEDIANHFGVLLALYALMQVIFAPWLGKMSD 66

Query: 108 RYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEH 167
           R+GR+PV+++      +   L   S   WM  L R     L+G+ G   A A  +  +  
Sbjct: 67  RFGRRPVLLLSLIGASLDYLLLAFSSALWMLYLGRL----LSGITGATGAVAASVIADTT 122

Query: 168 QALG----LSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCIS 223
            A         +  ++G+GLI GP +GGF     E  P+           P+F+  L ++
Sbjct: 123 SASQRVKWFGWLGASFGLGLIAGPIIGGF---AGEISPH----------SPFFIAAL-LN 168

Query: 224 LFAFGVTIAAFWLPETLHRHNDDDDSCDV 252
           +  F V +  FW  ET +  ++ D    V
Sbjct: 169 IVTFLVVM--FWFRETKNTRDNTDTEVGV 195

Resistance to tetracycline by an active tetracycline efflux. This is an energy-dependent process that decreases the accumulation of the antibiotic in whole cells. This protein functions as a metal-tetracycline/H(+) antiporter.

Escherichia coli (taxid: 562)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	432
224097490	495	predicted protein [Populus trichocarpa]	0.939	0.820	0.757	1e-175
359487104	1624	PREDICTED: uncharacterized protein LOC10	0.939	0.25	0.709	1e-172
296085436	518	unnamed protein product [Vitis vinifera]	0.939	0.783	0.709	1e-171
225465403	487	PREDICTED: protein ZINC INDUCED FACILITA	0.937	0.831	0.726	1e-170
225465405	487	PREDICTED: protein ZINC INDUCED FACILITA	0.939	0.833	0.742	1e-168
297807399	479	hypothetical protein ARALYDRAFT_488196 [	0.909	0.820	0.701	1e-162
79327804	411	zinc induced facilitator-like 1 protein	0.916	0.963	0.691	1e-158
30684565	478	zinc induced facilitator-like 1 protein	0.912	0.824	0.692	1e-158
359481459	490	PREDICTED: protein ZINC INDUCED FACILITA	0.944	0.832	0.675	1e-156
224137524	465	predicted protein [Populus trichocarpa]	0.912	0.847	0.667	1e-154

>gi|224097490|ref|XP_002310957.1| predicted protein [Populus trichocarpa] gi|222850777|gb|EEE88324.1| predicted protein [Populus trichocarpa]

 Score =  622 bits (1603), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 313/413 (75%), Positives = 359/413 (86%), Gaps = 7/413 (1%)

Query: 6   EKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLY 65
           E+ RE  LK +  YYENCPGCKVDQLK+ K G P  +L SIWI+VLCTALPIS+LFPFLY
Sbjct: 3   EEYREALLKKDD-YYENCPGCKVDQLKELKKGFPFRDLISIWIVVLCTALPISTLFPFLY 61

Query: 66  FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF 125
           FMI+DF IA+REEDIG YAGYVGSSFM GRALTSVFWG+VADRYGRKPVI++GT +VVIF
Sbjct: 62  FMIRDFGIAEREEDIGYYAGYVGSSFMIGRALTSVFWGIVADRYGRKPVILLGTIAVVIF 121

Query: 126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLII 185
           NTLFGLSVNFWMA++TRFLLGSLNGLLGPIKAYA EIFR E+QALGLSTVSTAWG+GLII
Sbjct: 122 NTLFGLSVNFWMAIITRFLLGSLNGLLGPIKAYAVEIFRAEYQALGLSTVSTAWGLGLII 181

Query: 186 GPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHND 245
           GPALGGFLAQPAEKYPNLFS ESLFG+FPYFLPC CISLFA  VTI + WLPETLH HN+
Sbjct: 182 GPALGGFLAQPAEKYPNLFSKESLFGRFPYFLPCFCISLFALVVTIVSCWLPETLHVHNE 241

Query: 246 DDDSCDVSYDALESASAEVK------EEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDM 299
              S + SYDALE+A+   K      +++GR+ +  +SLLKNWPLMSSIIVYC+FSLHDM
Sbjct: 242 KKTSSNDSYDALEAATGASKGDETRTDDKGRKPSSNESLLKNWPLMSSIIVYCIFSLHDM 301

Query: 300 AYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARI 359
           AY+EIFSLWA S +KLGGL Y+T+ VGEVLAI+GFSLLVFQLSLYPF+ERILGPI VA+I
Sbjct: 302 AYTEIFSLWAESSRKLGGLGYTTEDVGEVLAISGFSLLVFQLSLYPFVERILGPIPVAQI 361

Query: 360 AGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAV 412
           A  L+I LL+SYP+IAMLSG GL+ L+NCAS++KN+ SVSI+TG+FILQN AV
Sbjct: 362 AAALSILLLSSYPFIAMLSGLGLSILINCASIMKNVFSVSIVTGMFILQNNAV 414

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487104|ref|XP_002274088.2| PREDICTED: uncharacterized protein LOC100259102 [Vitis vinifera]

 Score =  609 bits (1571), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 293/413 (70%), Positives = 349/413 (84%), Gaps = 7/413 (1%)

Query: 5    EEKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFL 64
            EE+ RE  LK  K Y+E CPGC+V+ LKDT+ GLP+ +LF +WI+VLC ALPISSLFP+L
Sbjct: 1140 EEEQREVLLK--KVYHEGCPGCRVEHLKDTQRGLPVRQLFFVWIVVLCNALPISSLFPYL 1197

Query: 65   YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI 124
            YFMI+DF IAK E+DIG YAGY G+S+MFGRALTS+ WG+VADRYGRKPVI++GTASVVI
Sbjct: 1198 YFMIRDFNIAKTEKDIGYYAGYAGASYMFGRALTSILWGMVADRYGRKPVILVGTASVVI 1257

Query: 125  FNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLI 184
            FNTLFGLS+N+WMA+ +RFLLGS++ LLGPI AYA EIFREE+QALGLST++TAWG+GLI
Sbjct: 1258 FNTLFGLSLNYWMAISSRFLLGSMSTLLGPIMAYATEIFREEYQALGLSTINTAWGVGLI 1317

Query: 185  IGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHN 244
            IGPALGGFLAQPAEKYPN+FS ES+FG+FPYFLPCLC S++AFG+TIA  WL ETLH HN
Sbjct: 1318 IGPALGGFLAQPAEKYPNIFSKESIFGRFPYFLPCLCTSVYAFGITIACCWLQETLHTHN 1377

Query: 245  DDDDSCDVSYDALE-----SASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDM 299
            +++     SY+ALE     +A   V E E  + T K+SL+KNWPLMSSIIV+CVFSLHDM
Sbjct: 1378 ENNKLSKNSYNALEAPCGFNAEEAVNEIEANKPTSKESLIKNWPLMSSIIVFCVFSLHDM 1437

Query: 300  AYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARI 359
            AYSEIFSLWA SP+K GGL+YST  VG VLAI+GF +LVFQL LYP+LE++LGPI++ RI
Sbjct: 1438 AYSEIFSLWAVSPRKYGGLSYSTDDVGVVLAISGFGVLVFQLFLYPYLEKLLGPIIICRI 1497

Query: 360  AGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAV 412
            AGVL+IPLL  YP IAMLSGF L+  LNCAS +KN+LSVSI T L ILQNRAV
Sbjct: 1498 AGVLSIPLLAIYPLIAMLSGFNLSLALNCASAMKNVLSVSIGTSLIILQNRAV 1550

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085436|emb|CBI29168.3| unnamed protein product [Vitis vinifera]

 Score =  607 bits (1565), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 293/413 (70%), Positives = 349/413 (84%), Gaps = 7/413 (1%)

Query: 5   EEKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFL 64
           EE+ RE  LK  K Y+E CPGC+V+ LKDT+ GLP+ +LF +WI+VLC ALPISSLFP+L
Sbjct: 34  EEEQREVLLK--KVYHEGCPGCRVEHLKDTQRGLPVRQLFFVWIVVLCNALPISSLFPYL 91

Query: 65  YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI 124
           YFMI+DF IAK E+DIG YAGY G+S+MFGRALTS+ WG+VADRYGRKPVI++GTASVVI
Sbjct: 92  YFMIRDFNIAKTEKDIGYYAGYAGASYMFGRALTSILWGMVADRYGRKPVILVGTASVVI 151

Query: 125 FNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLI 184
           FNTLFGLS+N+WMA+ +RFLLGS++ LLGPI AYA EIFREE+QALGLST++TAWG+GLI
Sbjct: 152 FNTLFGLSLNYWMAISSRFLLGSMSTLLGPIMAYATEIFREEYQALGLSTINTAWGVGLI 211

Query: 185 IGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHN 244
           IGPALGGFLAQPAEKYPN+FS ES+FG+FPYFLPCLC S++AFG+TIA  WL ETLH HN
Sbjct: 212 IGPALGGFLAQPAEKYPNIFSKESIFGRFPYFLPCLCTSVYAFGITIACCWLQETLHTHN 271

Query: 245 DDDDSCDVSYDALES-----ASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDM 299
           +++     SY+ALE+     A   V E E  + T K+SL+KNWPLMSSIIV+CVFSLHDM
Sbjct: 272 ENNKLSKNSYNALEAPCGFNAEEAVNEIEANKPTSKESLIKNWPLMSSIIVFCVFSLHDM 331

Query: 300 AYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARI 359
           AYSEIFSLWA SP+K GGL+YST  VG VLAI+GF +LVFQL LYP+LE++LGPI++ RI
Sbjct: 332 AYSEIFSLWAVSPRKYGGLSYSTDDVGVVLAISGFGVLVFQLFLYPYLEKLLGPIIICRI 391

Query: 360 AGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAV 412
           AGVL+IPLL  YP IAMLSGF L+  LNCAS +KN+LSVSI T L ILQNRAV
Sbjct: 392 AGVLSIPLLAIYPLIAMLSGFNLSLALNCASAMKNVLSVSIGTSLIILQNRAV 444

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465403|ref|XP_002277598.1| PREDICTED: protein ZINC INDUCED FACILITATOR-LIKE 1 [Vitis vinifera] gi|296085440|emb|CBI29172.3| unnamed protein product [Vitis vinifera]

 Score =  604 bits (1557), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 300/413 (72%), Positives = 350/413 (84%), Gaps = 8/413 (1%)

Query: 6   EKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLY 65
           E+ + P LK  K YY+NC GC+V+QLK+T+ GLPI EL SIW +VLCTALPISSLFPFLY
Sbjct: 3   EEQQVPLLK--KVYYQNCSGCRVEQLKETRRGLPIRELVSIWSVVLCTALPISSLFPFLY 60

Query: 66  FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF 125
           FMI+DF IAKREEDIG YAGYVGS+FM GRALTSV WG+VADRYGRKPVI++GT +VVIF
Sbjct: 61  FMIRDFHIAKREEDIGYYAGYVGSAFMLGRALTSVAWGMVADRYGRKPVIMIGTITVVIF 120

Query: 126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLII 185
           NTLFGLSVNFWMA+ TRFLLGSLNG+LGPIKAYA EIFR+E+QALGLSTVSTA GIGLII
Sbjct: 121 NTLFGLSVNFWMALSTRFLLGSLNGVLGPIKAYAAEIFRDEYQALGLSTVSTARGIGLII 180

Query: 186 GPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHND 245
           GPALGGFLAQPAEKYP++FS +SLFG+FPYFLPCL IS++A  +T+A  WLPETLH HN+
Sbjct: 181 GPALGGFLAQPAEKYPDIFSEDSLFGRFPYFLPCLFISVYAMIITVACCWLPETLHTHNE 240

Query: 246 DDDSCDVSYDALESA----SAEVKEE--EGREATPKKSLLKNWPLMSSIIVYCVFSLHDM 299
           +  S + SYDALE A    +A+ KE+  EG E T  +SL  NWPLMSSII+YCVFSLHD+
Sbjct: 241 NKKSREDSYDALEGANGGSNAKEKEQEIEGSEPTSNESLFMNWPLMSSIIIYCVFSLHDI 300

Query: 300 AYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARI 359
           AY EIFSLWA SP+  GGL+YST  VG VLAI+GF L V Q++LYP +ER LGP+M+ RI
Sbjct: 301 AYIEIFSLWAVSPRIHGGLSYSTDDVGVVLAISGFGLFVSQVTLYPLVERFLGPVMICRI 360

Query: 360 AGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAV 412
           AGVL+IPLL SYP IAMLSG  L+ +LNCASV+KN+LSVSIITG+F+LQN AV
Sbjct: 361 AGVLSIPLLASYPLIAMLSGSTLSVVLNCASVLKNVLSVSIITGMFLLQNSAV 413

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465405|ref|XP_002277751.1| PREDICTED: protein ZINC INDUCED FACILITATOR-LIKE 1 [Vitis vinifera] gi|296085442|emb|CBI29174.3| unnamed protein product [Vitis vinifera]

 Score =  598 bits (1541), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 309/416 (74%), Positives = 356/416 (85%), Gaps = 10/416 (2%)

Query: 3   AGEEKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFP 62
           A E+++  P LK  K YY+NC GC+V+QLK+T+ GLPI EL SIW +VLCTALPISSLFP
Sbjct: 2   AAEQQV--PLLK--KVYYQNCSGCRVEQLKETRRGLPIRELLSIWTVVLCTALPISSLFP 57

Query: 63  FLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV 122
           FLYFMI+DF IAKREEDIG YAGYVGS+FM GRALTSV WG+VADRYGRKPVI++GT +V
Sbjct: 58  FLYFMIRDFHIAKREEDIGYYAGYVGSAFMLGRALTSVAWGMVADRYGRKPVIMIGTIAV 117

Query: 123 VIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIG 182
           VIFNTLFGLSVNFWMA+ TRFLLGSLNGLLGPIKAYA EIFR+E+QALGLSTVSTAWGIG
Sbjct: 118 VIFNTLFGLSVNFWMALSTRFLLGSLNGLLGPIKAYAAEIFRDEYQALGLSTVSTAWGIG 177

Query: 183 LIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHR 242
           LIIGPALGGFLAQPAEKYP++FS +SLFG+FPYFLPCL IS++A  VT+A  WLPETLH 
Sbjct: 178 LIIGPALGGFLAQPAEKYPDIFSEDSLFGRFPYFLPCLFISVYAMIVTVACCWLPETLHT 237

Query: 243 HNDDDDSCDVSYDALESA----SAEVKEE--EGREATPKKSLLKNWPLMSSIIVYCVFSL 296
           HN++  S + SYDALE+A    +A+ KE+  EG E T  +SL  NWPLMSSIIVYCVFSL
Sbjct: 238 HNENKKSREDSYDALEAANGGSNAKEKEQEIEGSEPTSNESLFMNWPLMSSIIVYCVFSL 297

Query: 297 HDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMV 356
           HDMAY+EIFSLWA SP+  GGL+YST  VG VLAI+GF LLV QL+LYP +ER LGP+M+
Sbjct: 298 HDMAYTEIFSLWAVSPRIHGGLSYSTDDVGVVLAISGFGLLVSQLTLYPLVERFLGPVMI 357

Query: 357 ARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAV 412
            RIAGVL+IPLL SYP IAMLSG  L+ +LNCASV+KN+LSVSIITGLF+LQN AV
Sbjct: 358 CRIAGVLSIPLLASYPLIAMLSGSSLSVVLNCASVLKNVLSVSIITGLFLLQNSAV 413

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807399|ref|XP_002871583.1| hypothetical protein ARALYDRAFT_488196 [Arabidopsis lyrata subsp. lyrata] gi|297317420|gb|EFH47842.1| hypothetical protein ARALYDRAFT_488196 [Arabidopsis lyrata subsp. lyrata]

 Score =  578 bits (1491), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 280/399 (70%), Positives = 328/399 (82%), Gaps = 6/399 (1%)

Query: 16  EKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAK 75
           E +++E+CPGCKVDQ+K  + G P+ ELF++WIIVLCTALPISSLFPFLYFMI DF IAK
Sbjct: 11  ENKFHEDCPGCKVDQMKRLRRGFPLWELFTVWIIVLCTALPISSLFPFLYFMIDDFNIAK 70

Query: 76  REEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF 135
           +EEDIG YAG+VG SFM GRA TSV WGLVADRYGRKPVI++GTASVV+FNTLFGLS+NF
Sbjct: 71  KEEDIGFYAGFVGCSFMLGRAFTSVIWGLVADRYGRKPVILIGTASVVVFNTLFGLSLNF 130

Query: 136 WMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195
           WMA++TRF LGS NGLLGPIKAYA EIFR+E+Q L LS VSTAWGIGLIIGPA+GGFLAQ
Sbjct: 131 WMAIITRFCLGSFNGLLGPIKAYAMEIFRDEYQGLALSAVSTAWGIGLIIGPAIGGFLAQ 190

Query: 196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHN--DDDDSCDVS 253
           PA +YP+LFS +S+FGKFP+FLPC  IS+FAF VTI + W+PETLH H   DDDD    S
Sbjct: 191 PATQYPSLFSQDSIFGKFPFFLPCFAISVFAFLVTIISLWIPETLHNHKYVDDDD----S 246

Query: 254 YDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPK 313
           +DAL+  S + +  +  E   K SLL NWPL+SSIIVYCVFSLHDMAY+EIFSLWANSP+
Sbjct: 247 FDALKYLSHDPESNKVVERNEKSSLLNNWPLISSIIVYCVFSLHDMAYTEIFSLWANSPR 306

Query: 314 KLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPY 373
           K GGL YST  VG VLAI+GF LL+FQLSLY + ER+LGPI+V RI+G+L + +L+ YP 
Sbjct: 307 KYGGLGYSTADVGSVLAISGFGLLIFQLSLYSYAERLLGPIIVTRISGILAMVILSCYPL 366

Query: 374 IAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAV 412
           IA LSG  L   +N ASV KN+LS S ITGLFILQN AV
Sbjct: 367 IAKLSGLALTLAVNSASVAKNVLSTSAITGLFILQNNAV 405

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79327804|ref|NP_001031877.1| zinc induced facilitator-like 1 protein [Arabidopsis thaliana] gi|332004554|gb|AED91937.1| zinc induced facilitator-like 1 protein [Arabidopsis thaliana]

 Score =  565 bits (1457), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 276/399 (69%), Positives = 324/399 (81%), Gaps = 3/399 (0%)

Query: 16  EKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAK 75
           EK ++E+C GCKVDQ+K  + G P  ELF++WIIVLCTALPISSLFPFLYFMI DF IAK
Sbjct: 11  EKNFHEDCSGCKVDQMKRLRRGFPFWELFTVWIIVLCTALPISSLFPFLYFMIDDFNIAK 70

Query: 76  REEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF 135
           +EEDIG YAG+VG SFM GRA TSV WGLVADRYGRKPVI++GTASVV+FNTLFGLS+NF
Sbjct: 71  KEEDIGFYAGFVGCSFMLGRAFTSVAWGLVADRYGRKPVILIGTASVVVFNTLFGLSLNF 130

Query: 136 WMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195
           WMA++TRF LGS NGLLGPIKAYA EIFR+E+Q L LS VSTAWGIGLIIGPA+GGFLAQ
Sbjct: 131 WMAIITRFCLGSFNGLLGPIKAYAMEIFRDEYQGLALSAVSTAWGIGLIIGPAIGGFLAQ 190

Query: 196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYD 255
           PA++YP+LFS +S+FGKFP+FLPCL IS+FAF VTI +  +PETLH H  +DD    SYD
Sbjct: 191 PAKQYPSLFSQDSIFGKFPFFLPCLAISVFAFLVTIVSSRIPETLHNHKFNDDE---SYD 247

Query: 256 ALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKL 315
           AL+  S + +  +  E   K SLL NWPL+SSIIVYCVFSLHDMAY+EIFSLWANSP+K 
Sbjct: 248 ALKDLSDDPESNKVAERNGKSSLLNNWPLISSIIVYCVFSLHDMAYTEIFSLWANSPRKY 307

Query: 316 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIA 375
           GGL YST  VG VLA +GF LL+FQLSLY + ER+LGPI+V RI+G L + +L+ YP IA
Sbjct: 308 GGLGYSTADVGSVLAFSGFGLLIFQLSLYSYAERLLGPIIVTRISGSLAMVVLSCYPLIA 367

Query: 376 MLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVR 414
            LSG  L   +  ASV K++L  S ITGLFILQN+AV R
Sbjct: 368 KLSGLALTVTVTSASVAKSVLGTSAITGLFILQNKAVTR 406

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30684565|ref|NP_851036.1| zinc induced facilitator-like 1 protein [Arabidopsis thaliana] gi|75249957|sp|Q94BZ1.1|ZIFL1_ARATH RecName: Full=Protein ZINC INDUCED FACILITATOR-LIKE 1; AltName: Full=Protein ZIF-LIKE 1 gi|14517414|gb|AAK62597.1| AT5g13750/MXE10_2 [Arabidopsis thaliana] gi|17065582|gb|AAL32945.1| transporter-like protein [Arabidopsis thaliana] gi|20857393|gb|AAM26717.1| AT5g13750/MXE10_2 [Arabidopsis thaliana] gi|332004552|gb|AED91935.1| zinc induced facilitator-like 1 protein [Arabidopsis thaliana]

 Score =  565 bits (1455), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 275/397 (69%), Positives = 323/397 (81%), Gaps = 3/397 (0%)

Query: 16  EKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAK 75
           EK ++E+C GCKVDQ+K  + G P  ELF++WIIVLCTALPISSLFPFLYFMI DF IAK
Sbjct: 11  EKNFHEDCSGCKVDQMKRLRRGFPFWELFTVWIIVLCTALPISSLFPFLYFMIDDFNIAK 70

Query: 76  REEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF 135
           +EEDIG YAG+VG SFM GRA TSV WGLVADRYGRKPVI++GTASVV+FNTLFGLS+NF
Sbjct: 71  KEEDIGFYAGFVGCSFMLGRAFTSVAWGLVADRYGRKPVILIGTASVVVFNTLFGLSLNF 130

Query: 136 WMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195
           WMA++TRF LGS NGLLGPIKAYA EIFR+E+Q L LS VSTAWGIGLIIGPA+GGFLAQ
Sbjct: 131 WMAIITRFCLGSFNGLLGPIKAYAMEIFRDEYQGLALSAVSTAWGIGLIIGPAIGGFLAQ 190

Query: 196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYD 255
           PA++YP+LFS +S+FGKFP+FLPCL IS+FAF VTI +  +PETLH H  +DD    SYD
Sbjct: 191 PAKQYPSLFSQDSIFGKFPFFLPCLAISVFAFLVTIVSSRIPETLHNHKFNDDE---SYD 247

Query: 256 ALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKL 315
           AL+  S + +  +  E   K SLL NWPL+SSIIVYCVFSLHDMAY+EIFSLWANSP+K 
Sbjct: 248 ALKDLSDDPESNKVAERNGKSSLLNNWPLISSIIVYCVFSLHDMAYTEIFSLWANSPRKY 307

Query: 316 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIA 375
           GGL YST  VG VLA +GF LL+FQLSLY + ER+LGPI+V RI+G L + +L+ YP IA
Sbjct: 308 GGLGYSTADVGSVLAFSGFGLLIFQLSLYSYAERLLGPIIVTRISGSLAMVVLSCYPLIA 367

Query: 376 MLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAV 412
            LSG  L   +  ASV K++L  S ITGLFILQN+AV
Sbjct: 368 KLSGLALTVTVTSASVAKSVLGTSAITGLFILQNKAV 404

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481459|ref|XP_003632620.1| PREDICTED: protein ZINC INDUCED FACILITATOR-LIKE 1-like [Vitis vinifera] gi|297741718|emb|CBI32850.3| unnamed protein product [Vitis vinifera]

 Score =  558 bits (1439), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 279/413 (67%), Positives = 337/413 (81%), Gaps = 5/413 (1%)

Query: 7   KLREPFLKNEK-RYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLY 65
           K RE  LK E   Y E+CPGCK+D LK++  G+P   LF +WI+VLC ALPISSLFPFLY
Sbjct: 3   KNREALLKKEVWEYDESCPGCKIDHLKESNPGIPFKLLFYVWIVVLCAALPISSLFPFLY 62

Query: 66  FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF 125
           FMI+DF IAKREEDIG YAGYVGSSFMFGRALTSV WG+VADRYGRKPVI  G  +++IF
Sbjct: 63  FMIRDFHIAKREEDIGFYAGYVGSSFMFGRALTSVIWGMVADRYGRKPVITAGLIALIIF 122

Query: 126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLII 185
           NTLFGLS N WMA+ TRFLLGS  G+LGP++AYA E+ R+E+QALG+S +STAWGIGL+I
Sbjct: 123 NTLFGLSTNVWMALSTRFLLGSFCGILGPMRAYASEVCRKEYQALGMSIISTAWGIGLVI 182

Query: 186 GPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHND 245
           GPALGGFLAQPAEK+P++FS ESLFG+FPYFLPCL IS FA GV++  +WLPETLH H +
Sbjct: 183 GPALGGFLAQPAEKFPHIFSKESLFGRFPYFLPCLLISTFALGVSVLCYWLPETLHIHKE 242

Query: 246 DDDSCDVSYDALESASAEVKEE----EGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAY 301
           + +  ++    + +   +VKE+    EG+    ++SLLKNWPLMSSIIVYCVF LHDMAY
Sbjct: 243 NKEQDELYAWEVAAYGCDVKEKLKKFEGKGPNQQQSLLKNWPLMSSIIVYCVFQLHDMAY 302

Query: 302 SEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG 361
           +EIFSLWA SP + GGL+YST  VGEVLA++G  LL+FQL LYP LERILGP+MV+RI  
Sbjct: 303 AEIFSLWAISPSEYGGLSYSTADVGEVLAMSGLGLLLFQLFLYPPLERILGPVMVSRIGA 362

Query: 362 VLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVR 414
           VLT+PLL+SYP IAMLSG GL+ L+NCAS++KN+L VSI TGLF+LQNRAV +
Sbjct: 363 VLTVPLLSSYPLIAMLSGVGLSLLINCASLLKNVLCVSITTGLFLLQNRAVTQ 415

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137524|ref|XP_002322579.1| predicted protein [Populus trichocarpa] gi|222867209|gb|EEF04340.1| predicted protein [Populus trichocarpa]

 Score =  549 bits (1415), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 269/403 (66%), Positives = 330/403 (81%), Gaps = 9/403 (2%)

Query: 13  LKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQ 72
           L  + +YYE+CPGCK++  K+T +G+P   L  +WI+VLC ALPISSLFPFLYFMI+DF 
Sbjct: 3   LLRKNKYYEDCPGCKIELSKETNTGVPFKYLLYVWIVVLCAALPISSLFPFLYFMIRDFH 62

Query: 73  IAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS 132
           IAKREEDIG YAGYVGS+FMFGRALTSV WG++ADRYGRKPVII GT SVVIFNTLFGLS
Sbjct: 63  IAKREEDIGYYAGYVGSAFMFGRALTSVLWGMIADRYGRKPVIIFGTVSVVIFNTLFGLS 122

Query: 133 VNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGF 192
            +FWMA+ TRFLLGSL G+LGP++AYA E+ R+E+QALG+S +ST+WGIGL+IGPALGGF
Sbjct: 123 TSFWMAISTRFLLGSLCGILGPMRAYASEVCRKEYQALGMSIISTSWGIGLVIGPALGGF 182

Query: 193 LAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDV 252
           LAQPAEK+PN+FSS+SLFG+FPY LPCL IS+F+ GV +    LPET+H H  +D+ C+ 
Sbjct: 183 LAQPAEKFPNIFSSDSLFGRFPYLLPCLLISIFSVGVLVVCCLLPETIHNHKGNDEECND 242

Query: 253 SYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSP 312
           S DAL + + E    +       KSLLKNWPL+SSIIVYCVF LHDMAY+EIFSLWA SP
Sbjct: 243 S-DALGATTFESNSSQ-------KSLLKNWPLISSIIVYCVFQLHDMAYAEIFSLWAVSP 294

Query: 313 KKLGGLNYSTQMVGEVLAITG-FSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSY 371
           +K GGL++ST  VGEVLA +G F LL+FQL +YP  ER  GP+MV+R+  VLTIPLL+SY
Sbjct: 295 RKNGGLSFSTADVGEVLAFSGSFGLLLFQLFIYPVAERNFGPVMVSRLGAVLTIPLLSSY 354

Query: 372 PYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVR 414
           P+IA+L G  L  L+NCAS++KN+LSVSI TGLF+LQNR+V +
Sbjct: 355 PFIALLKGLTLMLLINCASILKNVLSVSITTGLFLLQNRSVAQ 397

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	432
TAIR|locus:2177105	478	ZIFL1 "zinc induced facilitato	0.912	0.824	0.639	4.8e-133
TAIR|locus:2173254	486	ZIF1 "zinc induced facilitator	0.939	0.835	0.588	1.8e-126
TAIR|locus:2101109	484	ZIFL2 "AT3G43790" [Arabidopsis	0.905	0.807	0.571	1.3e-116
ASPGD|ASPL0000053890	591	AN0890 [Emericella nidulans (t	0.472	0.345	0.344	1.7e-40
CGD|CAL0002781	633	orf19.4550 [Candida albicans (	0.333	0.227	0.379	1e-30
CGD|CAL0004954	546	orf19.3432 [Candida albicans (	0.333	0.263	0.386	2.1e-30
DICTYBASE|DDB_G0269964	665	DDB_G0269964 "Uncharacterized	0.483	0.314	0.309	4.7e-30
DICTYBASE|DDB_G0282945	669	DDB_G0282945 [Dictyostelium di	0.488	0.315	0.297	7.8e-30
ASPGD|ASPL0000051539	480	AN1423 [Emericella nidulans (t	0.358	0.322	0.354	3.1e-27
SGD|S000000617	611	YCR023C "Vacuolar membrane pro	0.481	0.340	0.297	6.4e-25

TAIR|locus:2177105 ZIFL1 "zinc induced facilitator-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1304 (464.1 bits), Expect = 4.8e-133, P = 4.8e-133
 Identities = 254/397 (63%), Positives = 300/397 (75%)

Query:    16 EKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAK 75
             EK ++E+C GCKVDQ+K  + G P  ELF++WIIVLCTALPISSLFPFLYFMI DF IAK
Sbjct:    11 EKNFHEDCSGCKVDQMKRLRRGFPFWELFTVWIIVLCTALPISSLFPFLYFMIDDFNIAK 70

Query:    76 REEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF 135
             +EEDIG YAG+VG SFM GRA TSV WGLVADRYGRKPVI++GTASVV+FNTLFGLS+NF
Sbjct:    71 KEEDIGFYAGFVGCSFMLGRAFTSVAWGLVADRYGRKPVILIGTASVVVFNTLFGLSLNF 130

Query:   136 WMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTXXXXXXXXXXXXXXXXXQ 195
             WMA++TRF LGS NGLLGPIKAYA EIFR+E+Q L LS VST                 Q
Sbjct:   131 WMAIITRFCLGSFNGLLGPIKAYAMEIFRDEYQGLALSAVSTAWGIGLIIGPAIGGFLAQ 190

Query:   196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNXXXXXXXXXXX 255
             PA++YP+LFS +S+FGKFP+FLPCL IS+FAF VTI +  +PETLH H            
Sbjct:   191 PAKQYPSLFSQDSIFGKFPFFLPCLAISVFAFLVTIVSSRIPETLHNHKFNDDESYD--- 247

Query:   256 ALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKL 315
             AL+  S + +  +  E   K SLL NWPL+SSIIVYCVFSLHDMAY+EIFSLWANSP+K 
Sbjct:   248 ALKDLSDDPESNKVAERNGKSSLLNNWPLISSIIVYCVFSLHDMAYTEIFSLWANSPRKY 307

Query:   316 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIA 375
             GGL YST  VG VLA +GF LL+FQLSLY + ER+LGPI+V RI+G L + +L+ YP IA
Sbjct:   308 GGLGYSTADVGSVLAFSGFGLLIFQLSLYSYAERLLGPIIVTRISGSLAMVVLSCYPLIA 367

Query:   376 MLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAV 412
              LSG  L   +  ASV K++L  S ITGLFILQN+AV
Sbjct:   368 KLSGLALTVTVTSASVAKSVLGTSAITGLFILQNKAV 404

GO:0005215 "transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0080167 "response to karrikin" evidence=IEP

TAIR|locus:2173254 ZIF1 "zinc induced facilitator 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1242 (442.3 bits), Expect = 1.8e-126, P = 1.8e-126
 Identities = 242/411 (58%), Positives = 295/411 (71%)

Query:     6 EKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLY 65
             E+ +E  L+ +  Y++ CPGCKV+Q+K  + G P  EL  +WIIVL T+LPISSL+PFLY
Sbjct:     3 EEYKEALLEKQN-YHDGCPGCKVEQMKQLRRGYPYLELSFVWIIVLSTSLPISSLYPFLY 61

Query:    66 FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF 125
             +MI+DF +AK E+DIG YAG+VG SFM GRALTSVFWG+VADRYGRKP+I++GT S+ IF
Sbjct:    62 YMIEDFGVAKTEKDIGFYAGFVGCSFMLGRALTSVFWGIVADRYGRKPIILLGTISIAIF 121

Query:   126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTXXXXXXXX 185
             N LFGLS NFWMA+ TRFLLGS N LLG +KAYA EIFR+E+QA  +S VST        
Sbjct:   122 NALFGLSSNFWMAIGTRFLLGSFNCLLGTMKAYASEIFRDEYQATAMSAVSTAWGIGLII 181

Query:   186 XXXXXXXXXQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNX 245
                      QPA+KYPN+FS ESLFG+F Y LPC  IS FA  VT+   ++PETLH H  
Sbjct:   182 GPALGGFLAQPADKYPNVFSQESLFGRFRYALPCFTISAFALLVTVLCCFIPETLHNHKL 241

Query:   246 XXXXXXXXXXALESASAEVKEEEGR----EATPKKSLLKNWPLMSSIIVYCVFSLHDMAY 301
                        LE+AS E     G+    E    +SLLKNWPLMSSIIVYCV  LHD AY
Sbjct:   242 DSLSHDDSYDILEAASHESSPSTGKAGKNERKASQSLLKNWPLMSSIIVYCVLCLHDTAY 301

Query:   302 SEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG 361
             SEIF+LWANSP+K GGL+YST  VG VLAI+G  L  FQ+ +YP  E++LGP++V R AG
Sbjct:   302 SEIFALWANSPRKYGGLSYSTNEVGTVLAISGLGLFSFQVFVYPLAEKLLGPVLVTRYAG 361

Query:   362 VLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAV 412
              L IP+  SYP+IA LSG  L+ +LNCAS++ N+LSVS ITGL ILQNRAV
Sbjct:   362 ALMIPIQMSYPFIAGLSGLSLSLMLNCASILINVLSVSAITGLLILQNRAV 412

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0010043 "response to zinc ion" evidence=IEP

GO:0055069 "zinc ion homeostasis" evidence=IMP

TAIR|locus:2101109 ZIFL2 "AT3G43790" [Arabidopsis thaliana (taxid:3702)]

 Score = 1149 (409.5 bits), Expect = 1.3e-116, P = 1.3e-116
 Identities = 224/392 (57%), Positives = 285/392 (72%)

Query:    21 ENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDI 80
             E+CPGC +D+ K  + G+P   L  IW++ LCTALPISSLFP++YFMI+DF IAK+EEDI
Sbjct:    15 EDCPGCIIDRTKQQQRGVPYLHLSFIWLVSLCTALPISSLFPYIYFMIRDFHIAKQEEDI 74

Query:    81 GSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVL 140
             G YAG+VGSSFM GRALTS+FWG +ADRYGRKP+I++GT SV+IFNTLFGLS +FW+A+ 
Sbjct:    75 GFYAGFVGSSFMIGRALTSIFWGKLADRYGRKPIILIGTFSVIIFNTLFGLSTSFWLAIS 134

Query:   141 TRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTXXXXXXXXXXXXXXXXXQPAEKY 200
              RFLLG  N LLG I+AYA E+  EE+ AL LS VST                 QPAEKY
Sbjct:   135 VRFLLGCFNCLLGVIRAYASEVVSEEYNALSLSVVSTSRGIGLILGPAIGGYLAQPAEKY 194

Query:   201 PNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNXXXXXXXXXXXALESA 260
             PN+FS  S+FG+FPYFLP L IS++A  V IA +WLPETLH                +  
Sbjct:   195 PNIFSQSSVFGRFPYFLPSLVISVYATAVLIACWWLPETLHTRCRIAQGRLNPTELNDDE 254

Query:   261 SAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNY 320
             S     +E ++   K SLL+N PLM+ IIVYCVFSL ++AY+EIFSLWA S +  GGL++
Sbjct:   255 SRGGGLDE-QKIINKPSLLRNRPLMAIIIVYCVFSLQEIAYNEIFSLWAVSDRSYGGLSF 313

Query:   321 STQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGF 380
             S+Q VGEVLAI+G  LLVFQL +YP LE+ +G + V R++ VL IPLL+ YPYIA+LSG 
Sbjct:   314 SSQDVGEVLAISGLGLLVFQLLVYPPLEKSVGLLAVIRLSAVLLIPLLSCYPYIALLSGV 373

Query:   381 GLAFLLNCASVVKNLLSVSIITGLFILQNRAV 412
              L  ++NCAS++KN LS+S++TGLFI+ N+AV
Sbjct:   374 TLHLVINCASIIKNALSISLVTGLFIMLNKAV 405

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP

ASPGD|ASPL0000053890 AN0890 [Emericella nidulans (taxid:162425)]

 Score = 342 (125.4 bits), Expect = 1.7e-40, Sum P(2) = 1.7e-40
 Identities = 71/206 (34%), Positives = 106/206 (51%)

Query:    36 SGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGR 95
             S  PI +LF + +  +C  +   S+FP++Y M++ F +   +  I  YAG + SSF F  
Sbjct:    21 SAFPIRQLFVLALCRICEPIAFMSIFPYVYHMVESFHVTSNDRKIALYAGLITSSFTFAE 80

Query:    96 ALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI 155
                 +FWG ++D+ GRKPV+IMG     I   +FG + N   A++ R L G LNG +G +
Sbjct:    81 FSAGMFWGRMSDKIGRKPVLIMGLVGTAISMVVFGFAPNLATAMIARALGGLLNGNIGVL 140

Query:   156 KAYACEIFR-EEHQALGLSTVSTXXXXXXXXXXXXXXXXXQPAEKYPNLFSSESLFGKFP 214
             +    EI   +EHQ    S +                   QP + YP LFS ES+F KFP
Sbjct:   141 QTTVAEIVTVKEHQPRAYSIMPFVWCLGSIIGPAMGGALSQPCDNYPWLFSGESIFKKFP 200

Query:   215 YFLPCL-CISLFAFGVTIAAFWLPET 239
             + LP L C+ +   G+ +   +L ET
Sbjct:   201 FLLPNLVCVVVLMTGIVVGLLFLEET 226

GO:0003674 "molecular_function" evidence=ND

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0000329 "fungal-type vacuole membrane" evidence=IEA

CGD|CAL0002781 orf19.4550 [Candida albicans (taxid:5476)]

 Score = 291 (107.5 bits), Expect = 1.0e-30, Sum P(2) = 1.0e-30
 Identities = 55/145 (37%), Positives = 85/145 (58%)

Query:    32 KDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSF 91
             ++   G P+ ++F I  I     +  +SLFP++YFMI+DF IA    DI  Y+GY+ +SF
Sbjct:    11 REQMKGFPLWQMFVISCIRFSEPIAFTSLFPYVYFMIRDFNIAPHSTDIAKYSGYLSASF 70

Query:    92 MFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGL 151
              F +    V WG  +D+YGRK +++MG     +   +FG S NFW+AV  R L+G LNG 
Sbjct:    71 AFCQFFCCVQWGKASDKYGRKKILLMGLLGTAVSMIIFGFSPNFWVAVFARSLMGCLNGN 130

Query:   152 LGPIKAYACEIF-REEHQALGLSTV 175
             +  ++    EI   + HQ++  ST+
Sbjct:   131 IAVLRTAIGEIATHKNHQSIAFSTL 155

GO:0015238 "drug transmembrane transporter activity" evidence=ISS

GO:0015893 "drug transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0000329 "fungal-type vacuole membrane" evidence=IEA

CGD|CAL0004954 orf19.3432 [Candida albicans (taxid:5476)]

 Score = 275 (101.9 bits), Expect = 2.1e-30, Sum P(3) = 2.1e-30
 Identities = 56/145 (38%), Positives = 89/145 (61%)

Query:    32 KDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSF 91
             K++ +  PI ++  I II     L  +S+FP++YFMI+DF IA +EEDI  Y+GY+ SSF
Sbjct:     8 KESLNDFPIRQMIIICIIRFAEPLAFTSIFPYIYFMIRDFHIAIKEEDISQYSGYIASSF 67

Query:    92 MFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGL 151
                + L ++ WG ++++ GRK ++I+G     I   LFG + N++ A++ R L G LNG 
Sbjct:    68 AICQFLFAIHWGTMSEKLGRKLILIIGLLGTSISLLLFGFARNYYWALIARCLAGVLNGN 127

Query:   152 LGPIKAYACEIFREE-HQALGLSTV 175
             +  ++    EI  E+ HQ L  ST+
Sbjct:   128 VAVLRTMIGEIAVEKRHQPLAFSTM 152

GO:0015238 "drug transmembrane transporter activity" evidence=ISS

GO:0015893 "drug transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

DICTYBASE|DDB_G0269964 DDB_G0269964 "Uncharacterized membrane protein YCR023C" [Dictyostelium discoideum (taxid:44689)]

 Score = 282 (104.3 bits), Expect = 4.7e-30, Sum P(2) = 4.7e-30
 Identities = 65/210 (30%), Positives = 102/210 (48%)

Query:    32 KDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSF 91
             K+  + +P  +L   ++++LC A+  SS F ++   I    +  + E +G YAG++ SSF
Sbjct:     8 KNHVTPMPWKKLIGAYVLLLCEAISTSSFFTYISPFIIFLGVTDKAELVGYYAGFIASSF 67

Query:    92 MFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGL 151
                + L+S FWG +ADR GRKP++I G+   VI     G S +  M +L+R + G LNG 
Sbjct:    68 SAAQFLSSFFWGKMADRLGRKPILIFGSVGSVISLLCIGTSKSLVMLILSRSINGLLNGN 127

Query:   152 LGPIKAYACEIFREEHQALGLSTVSTXXXXXXXXXXXXXXXXXQPAEKYPNLFSSESLFG 211
             +G +K Y  E   + +Q      V                    P +   ++F    LF 
Sbjct:   128 IGVVKTYIGECTDKTNQVEAFGWVGLTWGLGSILGPSIGGLLADPVKNMSSIFKGSKLFE 187

Query:   212 KFPYFLPCLCIS-LFAFGVTIAAFWLPETL 240
              FP+FLP L I+ L   G      ++ ETL
Sbjct:   188 LFPFFLPNLVIAFLTIIGCVFTQLYMKETL 217

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

DICTYBASE|DDB_G0282945 DDB_G0282945 [Dictyostelium discoideum (taxid:44689)]

 Score = 282 (104.3 bits), Expect = 7.8e-30, Sum P(2) = 7.8e-30
 Identities = 63/212 (29%), Positives = 109/212 (51%)

Query:    29 DQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVG 88
             +QL DT + LP+ ++ +I+II+LC A+   S+FP++ F++  F +   +  +G + G + 
Sbjct:    65 NQLDDTITPLPMMKILAIFIIMLCDAINSLSIFPYVNFLVSSFNLTTDKNKLGYFVGILA 124

Query:    89 SSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSL 148
             SS+   + ++S FWG  ++  GR+P +++G    +I  T  G S N+ M V+ RFL G L
Sbjct:   125 SSYYIAQLVSSFFWGWFSNYRGRRPSLLLGLIGSMICLTGVGFSRNYPMVVVFRFLSGLL 184

Query:   149 NGLLGPIKAYACEIFREEHQALGLSTVSTXXXXXXXXXXXXXXXXXQPAEKYPNLFSSES 208
             NG +   K    EI    +QA   S +                      +K+P L    +
Sbjct:   185 NGNVSIAKTMLGEITDSSNQAKAFSFIGLSWGVGGIIAPLIGGFFSNFCKKHPELLGDGN 244

Query:   209 LFGKFPYFLPCLCISLFAF-GVTIAAFWLPET 239
             +F +FPY LP +   LF+  G+ +   +L E+
Sbjct:   245 IFCRFPYLLPNIICVLFSLTGLVLGYVYLQES 276

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

ASPGD|ASPL0000051539 AN1423 [Emericella nidulans (taxid:162425)]

 Score = 259 (96.2 bits), Expect = 3.1e-27, Sum P(2) = 3.1e-27
 Identities = 62/175 (35%), Positives = 94/175 (53%)

Query:    67 MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFN 126
             M+KDF + +   D   YAG + ++F    A T +FWG ++DR GRKPVII G A  ++  
Sbjct:     1 MVKDFHMGEGS-DASFYAGILVATFSLVEAFTGMFWGALSDRVGRKPVIISGLAGTIVSL 59

Query:   127 TLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIF-REEHQALGLSTVSTXXXXXXXX 185
              + G + N+W+A+L R L G LNG +G I+    EI  R EH+   +  +          
Sbjct:    60 LIVGFAPNYWVALLGRGLGGLLNGNIGVIQTMVGEIVKRPEHERPAIGGL---------- 109

Query:   186 XXXXXXXXXQPAEKYPNLFSSESLFGKFPYFLP-CLCISLFAFGVTIAAFWLPET 239
                      +PA+ YP++FS + +FG+FPY LP  +C +L    +  A  +L ET
Sbjct:   110 -------LAKPADNYPSVFSRDGIFGRFPYLLPNVVCSTLLLGSILFAWAFLQET 157

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

SGD|S000000617 YCR023C "Vacuolar membrane protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 274 (101.5 bits), Expect = 6.4e-25, Sum P(2) = 6.4e-25
 Identities = 64/215 (29%), Positives = 107/215 (49%)

Query:    32 KDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSF 91
             K+   G P  +L  + ++     +  SSLFP++YFM++DF IA  +  +  Y+GY+ SSF
Sbjct:     9 KEQMDGFPWVQLVVVSLVRFSEPIAFSSLFPYVYFMVRDFNIAPNDAQVSKYSGYLSSSF 68

Query:    92 MFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGL 151
                + +++  WG  ++++GRK  +  G     +   + G S NF+ A++ R L+G LNG 
Sbjct:    69 ALCQVISAYHWGRFSEKHGRKITLTCGLIGTSVSLLILGFSRNFYQALVARSLMGLLNGN 128

Query:   152 LGPIKAYACEIFRE-EHQALGLSTVSTXXXXXXXXX---XXXXXXXXQPAEKYPNLFS-- 205
             +G I+    EI  E +HQAL  ST+                          + P  F   
Sbjct:   129 VGVIRTIIGEIATERKHQALAFSTMPLLFQFGAVVGPMIGGFLVFRDGTMNEVPLWFPHF 188

Query:   206 SESLFGKFPYFLPCLCISLFA-FGVTIAAFWLPET 239
             ++ +   +PY LP + + +F  FG+T A  +L ET
Sbjct:   189 AKRIIRSYPYALPNVVVCMFLMFGLTNATLFLEET 223

GO:0016021 "integral to membrane" evidence=ISM;IEA

GO:0000329 "fungal-type vacuole membrane" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00033971001	SubName- Full=Chromosome undetermined scaffold_71, whole genome shotgun sequence; (488 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00036173001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (439 aa)			•						0.459
	GSVIVG00015514001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (456 aa)			•						0.434

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	432
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	5e-20
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	2e-17
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	3e-12
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	8e-12
PRK09874	408	PRK09874, PRK09874, drug efflux system protein Mdt	5e-11
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	3e-10
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	6e-08
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	7e-08
PRK12307	426	PRK12307, PRK12307, putative sialic acid transport	1e-07
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	4e-07
PRK11102	377	PRK11102, PRK11102, bicyclomycin/multidrug efflux	2e-06
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	3e-05
TIGR00900	365	TIGR00900, 2A0121, H+ Antiporter protein	3e-05
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	8e-05
PRK10473	392	PRK10473, PRK10473, multidrug efflux system protei	9e-05
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	1e-04
PRK11551	406	PRK11551, PRK11551, putative 3-hydroxyphenylpropio	5e-04
PRK11043	401	PRK11043, PRK11043, putative transporter; Provisio	6e-04
TIGR01299	742	TIGR01299, synapt_SV2, synaptic vesicle protein SV	0.002
COG0738	422	COG0738, FucP, Fucose permease [Carbohydrate trans	0.003

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 90.2 bits (224), Expect = 5e-20
 Identities = 70/343 (20%), Positives = 123/343 (35%), Gaps = 46/343 (13%)

Query: 46  IWIIVLCTALPISSLFPFL-YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGL 104
           +++      L  S L P L  ++ +D  I+       +  G + ++F  G AL     G 
Sbjct: 1   LFLAAFLAGLGRSLLGPALPLYLAEDLGISP------TEIGLLLTAFSLGYALAQPLAGR 54

Query: 105 VADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIF 163
           ++DR+GR+ V+++G     +   L   + + W+ ++ R L G   G L P   A   + F
Sbjct: 55  LSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWF 114

Query: 164 REEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCIS 223
             E +   L  +S  +G+G  +GP LGG LA             SLFG    FL    ++
Sbjct: 115 PPEERGRALGLLSAGFGLGAALGPLLGGLLA-------------SLFGWRAAFLILAILA 161

Query: 224 LFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWP 283
           L A  +       P    +                      +E         K LL++  
Sbjct: 162 LLAAVLAALLLPRPPPESKRP-----------------KPAEEAPAPLVPAWKLLLRDPV 204

Query: 284 LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSL 343
           L   + +              F+L    P     L  S  + G +L + G    + +L L
Sbjct: 205 LWLLLALLLFGFA-------FFALLTYLPLYQEVLGLSALLAGLLLGLAGLLGAIGRLLL 257

Query: 344 YPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLL 386
               +R+ G      +A +L I        +++        + 
Sbjct: 258 GRLSDRL-GRRRRLLLALLLLILAALGLALLSLTESSLWLLVA 299

Length = 346

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 83.1 bits (206), Expect = 2e-17
 Identities = 46/154 (29%), Positives = 78/154 (50%), Gaps = 7/154 (4%)

Query: 43  LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFW 102
           L  +++    + L    L P L  + +D  ++       S AG + S+F  G AL S+  
Sbjct: 1   LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSA------SQAGLIVSAFSLGYALGSLLA 54

Query: 103 GLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIK-AYACE 161
           G ++DR+GR+ V+++G     + + L   + + W+ ++ RFLLG   G L P   A   E
Sbjct: 55  GYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAE 114

Query: 162 IFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195
            F  + +   L   S  +G+G ++GP LGG LA+
Sbjct: 115 WFPPKERGRALGLFSAGFGLGALLGPLLGGLLAE 148

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 63.4 bits (155), Expect = 3e-12
 Identities = 46/152 (30%), Positives = 72/152 (47%), Gaps = 16/152 (10%)

Query: 89  SSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSL 148
           + +  G+ + S   GL+ DR+GRKPV+++G    V+   +F LS N  + ++ RFL G  
Sbjct: 5   AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFG 64

Query: 149 NGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSE 207
                    A   +I+  E + + L  +S    +G ++GP LGG LAQ            
Sbjct: 65  AAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQ-------FLGWR 117

Query: 208 SLFGKFPYFLPCLCISLFAFGVTIAAFWLPET 239
           + F     FL  L ++ F     + AF LPET
Sbjct: 118 APF----LFLAILALAAFI----LLAFLLPET 141

Length = 141

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 66.2 bits (162), Expect = 8e-12
 Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 1/111 (0%)

Query: 84  AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRF 143
            G++ S+ + G A  ++F+G +ADR GR+ V++       +F  L  L+ N    ++ RF
Sbjct: 54  LGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRF 113

Query: 144 LLG-SLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL 193
           L G  L GL+  + A   E   +  +   +  +   + IG  +G  L G+L
Sbjct: 114 LAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWL 164

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|182127 PRK09874, PRK09874, drug efflux system protein MdtG; Provisional

 Score = 63.8 bits (155), Expect = 5e-11
 Identities = 52/180 (28%), Positives = 79/180 (43%), Gaps = 9/180 (5%)

Query: 47  WIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGS-SFMFGRALTSVFWGLV 105
           W+    T    S + PFL   ++   +      +  ++G V S +F+F  A+ S FWG +
Sbjct: 20  WLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSA-LNMWSGLVFSITFLFS-AIASPFWGGL 77

Query: 106 ADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFRE 165
           ADR GRK +++     + I   L GL+ N W  ++ R LLG L G +    A        
Sbjct: 78  ADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGGFVPNANALIATQVPR 137

Query: 166 EHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLF 225
                 L T+ST    G ++GP  GG LA      P  F + S+         C  ++LF
Sbjct: 138 NKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASV------LFLCFLVTLF 191

Length = 408

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 61.5 bits (150), Expect = 3e-10
 Identities = 62/316 (19%), Positives = 110/316 (34%), Gaps = 52/316 (16%)

Query: 84  AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRF 143
           AG + +++  G AL +    L+  R  R+ +++   A  ++ N L  L+ +F + +L R 
Sbjct: 50  AGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARA 109

Query: 144 LLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPN 202
           L G  +G+   I  A A  +     +   L+ V T   +  ++G  LG FL Q       
Sbjct: 110 LAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQ------- 162

Query: 203 LFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASA 262
                 LFG    FL    ++L A    +    LP                        +
Sbjct: 163 ------LFGWRATFLAIAVLALLAL--LLLWKLLPP-----------------------S 191

Query: 263 EVKEEEGREATPKKSLLKNWPLMSSIIVY-CVFSLHDMAYSEIFSLWANSPKKLGGLNYS 321
           E+             LL+   ++  ++      + H   Y+ I       P       +S
Sbjct: 192 EISGSLPGPLRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYI------RPFLESVAGFS 245

Query: 322 TQMVGEVLAITGF-----SLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAM 376
              V  VL   G      +LL  +L+      R L   ++     +L +    + P +A+
Sbjct: 246 VSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALAL 304

Query: 377 LSGFGLAFLLNCASVV 392
              F   F  + A   
Sbjct: 305 ALLFLWGFAFSPALQG 320

Length = 394

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score = 54.3 bits (131), Expect = 6e-08
 Identities = 19/58 (32%), Positives = 32/58 (55%)

Query: 89  SSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLG 146
           S F  G  L S  +G ++DR+GRK V+++ T    +   L   S N+ + ++ R L+G
Sbjct: 134 SCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVG 191

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 53.9 bits (130), Expect = 7e-08
 Identities = 34/155 (21%), Positives = 63/155 (40%), Gaps = 4/155 (2%)

Query: 43  LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFW 102
           L  + ++ L   L     +  L ++    Q         + AG + S F  G  L ++  
Sbjct: 174 LRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSA--AEAGLLLSLFGLGGILGALLG 231

Query: 103 GLVADRYGRKPVIIM-GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLL-GPIKAYAC 160
           GL++DR GR+ ++++ G     +   L  L+ +  + ++   LLG   G     +   A 
Sbjct: 232 GLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLAS 291

Query: 161 EIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195
           E+   E +       +T   +G  +GP L G L  
Sbjct: 292 ELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLD 326

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional

 Score = 53.4 bits (128), Expect = 1e-07
 Identities = 39/159 (24%), Positives = 72/159 (45%), Gaps = 10/159 (6%)

Query: 43  LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFW 102
           LFS W+  +        +F  +Y +  D  +   E        ++ ++   GR      +
Sbjct: 20  LFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDME------GAFLATAAFIGRPFGGALF 73

Query: 103 GLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLG-SLNGLLGPIKAYACE 161
           GL+AD++GRKP+++    +  +   L GL+    M  L+RF++G  + G       YA E
Sbjct: 74  GLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVE 133

Query: 162 IFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY 200
            + +  ++   + + + +GIG II      F+   AE Y
Sbjct: 134 SWPKHLKSKASAFLVSGFGIGNIIAAY---FMPSFAEAY 169

Length = 426

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 51.5 bits (124), Expect = 4e-07
 Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 4/94 (4%)

Query: 57  ISSLFPFLYFMIKDFQIAKREEDIGS--YAGYVGSSFMFGRALTSVFWGLVADRYGRKPV 114
           I +    + F  +   +        S   +G + S F  G  + S+F G + DR+GRK  
Sbjct: 19  IGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKS 78

Query: 115 IIMGTASVVIFNTLFGLSV--NFWMAVLTRFLLG 146
           +++G    VI   L G +   +F+M ++ R ++G
Sbjct: 79  LLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVG 112

Length = 449

>gnl|CDD|182964 PRK11102, PRK11102, bicyclomycin/multidrug efflux system; Provisional

 Score = 49.5 bits (119), Expect = 2e-06
 Identities = 49/182 (26%), Positives = 78/182 (42%), Gaps = 32/182 (17%)

Query: 72  QIAKREEDIGSYAGYVG---SSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTL 128
            IA    D G  AG V    S+++ G A+  +F+G +AD +GRKPVI+ GT    +    
Sbjct: 16  VIAA---DFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVA 72

Query: 129 FGLSVNFWMAVLTRFLLGSLNGLLGP-----IKAYACEIFREEHQALGLSTVSTAWGIGL 183
             L+      +  RF    L+GL        I A   ++F +E  +  +S V+    I  
Sbjct: 73  CALAQTIDQLIYMRF----LHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAP 128

Query: 184 IIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL-PETLHR 242
           ++ P +GG+L          FS  ++F           ++L A       F+  PETL +
Sbjct: 129 LLAPIIGGWLL-------VWFSWHAIF---------WVLALAAILAAALVFFFIPETLPK 172

Query: 243 HN 244
             
Sbjct: 173 ER 174

Length = 377

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 26/148 (17%), Positives = 59/148 (39%), Gaps = 10/148 (6%)

Query: 44  FSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWG 103
             + + +L       +L  +L    +   ++         AG +        A+  +  G
Sbjct: 205 LWLLLALLLFGFAFFALLTYLPLYQEVLGLSA------LLAGLLLGLAGLLGAIGRLLLG 258

Query: 104 LVADRYGRKPVIIMGTASVVIFN---TLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYA 159
            ++DR GR+  +++    +++      L  L+ +    ++   LLG   GL+ P + A  
Sbjct: 259 RLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWLLVALLLLGFGAGLVFPALNALV 318

Query: 160 CEIFREEHQALGLSTVSTAWGIGLIIGP 187
            ++  +E +       +TA  +G  +GP
Sbjct: 319 SDLAPKEERGTASGLYNTAGSLGGALGP 346

Length = 346

>gnl|CDD|162098 TIGR00900, 2A0121, H+ Antiporter protein

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 28/123 (22%), Positives = 45/123 (36%), Gaps = 10/123 (8%)

Query: 81  GSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII-------MGTASVVIFNTLFGLSV 133
            S       + M    + S   G +ADRY RK V+I       +  A +     L GL++
Sbjct: 33  ASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNI 92

Query: 134 NFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGF 192
             W   +   +L        P  +A   ++  EE      S       +  I+GP +GG 
Sbjct: 93  --WQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGL 150

Query: 193 LAQ 195
           +  
Sbjct: 151 MYA 153

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 365

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score = 44.9 bits (107), Expect = 8e-05
 Identities = 32/147 (21%), Positives = 59/147 (40%), Gaps = 10/147 (6%)

Query: 97  LTSVFWGLVADRYGRKPVI-IMGTASVVI--FNTLFGLSVNFWMAVLTRFLLGSLNGLLG 153
           L S   G +AD++ +  VI I+    V +     L      FW+A    FLLG+ + +  
Sbjct: 62  LLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYS 121

Query: 154 PIKA-YACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGK 212
           P K     E+  +E+ +     +     + ++ G AL  FL +         ++ S    
Sbjct: 122 PAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFE--SVNG---NTPSEILG 176

Query: 213 FPYFLPCLCISLFAFGVTIAAFWLPET 239
                  + +++   G  I A+ LP+ 
Sbjct: 177 RIAPAGLVLLAVAVLG-LIFAYRLPKV 202

Length = 1146

>gnl|CDD|182486 PRK10473, PRK10473, multidrug efflux system protein MdtL; Provisional

 Score = 44.2 bits (105), Expect = 9e-05
 Identities = 23/59 (38%), Positives = 32/59 (54%)

Query: 89  SSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGS 147
           S ++ G A   +F G +ADR GRKPV I G A  +I + L  L+    + +  RFL G 
Sbjct: 45  SVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGI 103

Length = 392

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 13/120 (10%)

Query: 82  SYAGYVGSSFMFGRALTSVFWGLVADRYGRKPV----IIMGTASVVIFNTLFGLSVNFWM 137
           S A   G+ F FG  + S+ +G +ADR G +      ++    +V++ +TLF  ++   +
Sbjct: 285 SLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLL 344

Query: 138 AVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIG---LIIGPALGGFLA 194
             +  F +   NG    + A     +    +A G   V  A GIG    IIGP L G+L 
Sbjct: 345 GAIAGFFV---NGGQSGLYALMALFYPTAIRATG---VGWAIGIGRLGAIIGPILAGYLL 398

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

 Score = 41.9 bits (99), Expect = 5e-04
 Identities = 17/62 (27%), Positives = 32/62 (51%)

Query: 85  GYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFL 144
           G+  S+ + G    ++  G +ADR GRK ++I+  A   +F+     + +F   ++ R L
Sbjct: 53  GWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLL 112

Query: 145 LG 146
            G
Sbjct: 113 TG 114

Length = 406

>gnl|CDD|182924 PRK11043, PRK11043, putative transporter; Provisional

 Score = 41.4 bits (98), Expect = 6e-04
 Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 3/45 (6%)

Query: 77  EEDIGSYAGYVGSS---FMFGRALTSVFWGLVADRYGRKPVIIMG 118
           + D+ + A  V +S   F+ G AL  + WG ++DRYGRKPV++ G
Sbjct: 33  QADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAG 77

Length = 401

>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 8/125 (6%)

Query: 71  FQIAKREEDI---GSYAGYVGSSFMFGRALTSVFWGLVADRYGRKP--VIIMGTASVVIF 125
           F +   E+D+    S  G +G     G  + + FWG +AD+ GRK   +I +       F
Sbjct: 188 FVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAF 247

Query: 126 NTLFGLSVNFWMAVLTRFLLG-SLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLI 184
            + F     F++    R L G  + G +  + +Y  E   +E +   LS +   W IG I
Sbjct: 248 FSSFVQGYGFFL--FCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGI 305

Query: 185 IGPAL 189
              A+
Sbjct: 306 YAAAM 310

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742

>gnl|CDD|223809 COG0738, FucP, Fucose permease [Carbohydrate transport and metabolism]

 Score = 39.2 bits (92), Expect = 0.003
 Identities = 41/158 (25%), Positives = 65/158 (41%), Gaps = 16/158 (10%)

Query: 40  ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTS 99
           +T LF +W  + C       L P L    + F +   E      A  +  +F  G  + S
Sbjct: 18  LTSLFFLWGFITCL---NDILIPHL---KEVFDLTYFE------ASLIQFAFFGGYFIMS 65

Query: 100 VFWGLVADRYGRKPVIIMGTASVVIFNTLFG---LSVNFWMAVLTRFLLGSLNGLL-GPI 155
           +  GL+  + G K  I++G     +   LF     S ++   ++  F+L S  GLL    
Sbjct: 66  LPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAA 125

Query: 156 KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL 193
             Y   + + E  A  L+      G+G I+GP LG  L
Sbjct: 126 NPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSL 163

Length = 422

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	432
PRK14995	495	methyl viologen resistance protein SmvA; Provision	100.0
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	100.0
PRK10406	432	alpha-ketoglutarate transporter; Provisional	100.0
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	100.0
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	100.0
KOG2615	451	consensus Permease of the major facilitator superf	100.0
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	100.0
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	100.0
TIGR00891	405	2A0112 putative sialic acid transporter.	100.0
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	100.0
TIGR00900	365	2A0121 H+ Antiporter protein.	100.0
TIGR00893	399	2A0114 d-galactonate transporter.	100.0
PRK03545	390	putative arabinose transporter; Provisional	100.0
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	100.0
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	100.0
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	100.0
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	100.0
PRK10642	490	proline/glycine betaine transporter; Provisional	100.0
PRK12307	426	putative sialic acid transporter; Provisional	100.0
PRK11663	434	regulatory protein UhpC; Provisional	99.98
PRK10504	471	putative transporter; Provisional	99.98
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.98
PRK10133	438	L-fucose transporter; Provisional	99.98
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.98
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.98
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.97
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.97
PRK09705	393	cynX putative cyanate transporter; Provisional	99.97
PRK09952	438	shikimate transporter; Provisional	99.97
PRK15075	434	citrate-proton symporter; Provisional	99.97
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.97
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.97
PRK05122	399	major facilitator superfamily transporter; Provisi	99.97
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.97
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.97
TIGR00895	398	2A0115 benzoate transport.	99.97
PRK03633	381	putative MFS family transporter protein; Provision	99.97
PRK12382	392	putative transporter; Provisional	99.97
PLN00028	476	nitrate transmembrane transporter; Provisional	99.97
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.97
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.97
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.97
PRK10091	382	MFS transport protein AraJ; Provisional	99.97
PRK11043	401	putative transporter; Provisional	99.97
PRK03699	394	putative transporter; Provisional	99.97
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.97
PRK10489	417	enterobactin exporter EntS; Provisional	99.97
PRK03893	496	putative sialic acid transporter; Provisional	99.97
TIGR00898	505	2A0119 cation transport protein.	99.97
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.97
PRK09874	408	drug efflux system protein MdtG; Provisional	99.96
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.96
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.96
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.96
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.96
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.96
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.96
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.96
KOG0569	485	consensus Permease of the major facilitator superf	99.96
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.96
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.96
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.96
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.96
PRK10054	395	putative transporter; Provisional	99.96
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.96
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.96
TIGR00901	356	2A0125 AmpG-related permease.	99.96
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.96
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.95
PRK15011	393	sugar efflux transporter B; Provisional	99.95
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.95
KOG2532	466	consensus Permease of the major facilitator superf	99.95
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.95
TIGR00805	633	oat sodium-independent organic anion transporter.	99.95
PRK11010	491	ampG muropeptide transporter; Validated	99.95
KOG0254	513	consensus Predicted transporter (major facilitator	99.94
KOG2533	495	consensus Permease of the major facilitator superf	99.94
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.94
PRK11902	402	ampG muropeptide transporter; Reviewed	99.94
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.94
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.93
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.93
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.93
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.93
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.93
PRK09528	420	lacY galactoside permease; Reviewed	99.93
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.92
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.91
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.91
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.91
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.91
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.9
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.89
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.89
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.88
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.87
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.87
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.86
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.86
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.86
PRK09669	444	putative symporter YagG; Provisional	99.84
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.83
PRK10429	473	melibiose:sodium symporter; Provisional	99.83
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.83
PTZ00207	591	hypothetical protein; Provisional	99.82
PF13347	428	MFS_2: MFS/sugar transport protein	99.81
PRK09848	448	glucuronide transporter; Provisional	99.8
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.79
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.78
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.78
COG2211	467	MelB Na+/melibiose symporter and related transport	99.77
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.77
PRK11462	460	putative transporter; Provisional	99.76
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.75
KOG2563	480	consensus Permease of the major facilitator superf	99.71
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.7
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.69
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.68
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.68
KOG3626	735	consensus Organic anion transporter [Secondary met	99.66
PRK10642	490	proline/glycine betaine transporter; Provisional	99.61
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.61
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.6
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.59
PRK15011	393	sugar efflux transporter B; Provisional	99.58
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.57
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.56
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.56
PRK09528	420	lacY galactoside permease; Reviewed	99.56
PRK05122	399	major facilitator superfamily transporter; Provisi	99.55
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.54
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.52
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.52
PRK10489	417	enterobactin exporter EntS; Provisional	99.5
PRK09874	408	drug efflux system protein MdtG; Provisional	99.5
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.49
PRK09705	393	cynX putative cyanate transporter; Provisional	99.49
PRK12382	392	putative transporter; Provisional	99.48
PRK03633	381	putative MFS family transporter protein; Provision	99.47
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.46
PRK03699	394	putative transporter; Provisional	99.45
PRK03545	390	putative arabinose transporter; Provisional	99.45
TIGR00893	399	2A0114 d-galactonate transporter.	99.45
PRK03893	496	putative sialic acid transporter; Provisional	99.43
PRK09952	438	shikimate transporter; Provisional	99.43
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.42
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.42
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	99.41
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.41
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.39
TIGR00895	398	2A0115 benzoate transport.	99.37
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.36
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.36
PRK11663	434	regulatory protein UhpC; Provisional	99.35
TIGR00900	365	2A0121 H+ Antiporter protein.	99.35
TIGR00891	405	2A0112 putative sialic acid transporter.	99.34
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.33
PRK12307	426	putative sialic acid transporter; Provisional	99.32
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	99.32
PRK10504	471	putative transporter; Provisional	99.31
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.31
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.3
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.29
KOG0569	485	consensus Permease of the major facilitator superf	99.26
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.26
PLN00028	476	nitrate transmembrane transporter; Provisional	99.25
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.25
TIGR00898	505	2A0119 cation transport protein.	99.25
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.24
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.24
PRK15075	434	citrate-proton symporter; Provisional	99.24
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.24
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.24
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.23
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.23
PRK11010	491	ampG muropeptide transporter; Validated	99.23
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.23
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.22
PRK10054	395	putative transporter; Provisional	99.22
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.21
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.19
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.17
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.17
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.15
PRK10091	382	MFS transport protein AraJ; Provisional	99.14
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.12
PRK11902	402	ampG muropeptide transporter; Reviewed	99.11
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	99.11
TIGR00901	356	2A0125 AmpG-related permease.	99.1
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.1
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.1
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.09
KOG0637	498	consensus Sucrose transporter and related proteins	99.08
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.08
PF13347	428	MFS_2: MFS/sugar transport protein	99.07
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.07
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.05
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.04
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.04
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.04
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.03
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.03
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.02
PRK09848	448	glucuronide transporter; Provisional	99.01
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.97
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.96
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.96
PRK11043	401	putative transporter; Provisional	98.95
KOG3098	461	consensus Uncharacterized conserved protein [Funct	98.95
PRK10429	473	melibiose:sodium symporter; Provisional	98.95
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.94
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.92
PRK09669	444	putative symporter YagG; Provisional	98.91
PRK10133	438	L-fucose transporter; Provisional	98.9
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.9
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.85
COG0477	338	ProP Permeases of the major facilitator superfamil	98.82
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	98.82
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	98.8
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	98.78
KOG2532	466	consensus Permease of the major facilitator superf	98.77
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	98.77
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.73
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.72
COG2211	467	MelB Na+/melibiose symporter and related transport	98.71
PRK11462	460	putative transporter; Provisional	98.7
KOG3762	618	consensus Predicted transporter [General function	98.7
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.68
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.67
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.61
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.6
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.58
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.56
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.56
PRK15462	493	dipeptide/tripeptide permease D; Provisional	98.55
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.54
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.51
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.5
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.47
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.47
KOG3762	618	consensus Predicted transporter [General function	98.44
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.43
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.39
KOG3810	433	consensus Micronutrient transporters (folate trans	98.37
PF12832	77	MFS_1_like: MFS_1 like family	98.35
KOG0254	513	consensus Predicted transporter (major facilitator	98.33
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	98.3
PTZ00207	591	hypothetical protein; Provisional	98.29
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.26
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	98.21
KOG2533	495	consensus Permease of the major facilitator superf	98.21
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.09
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	98.05
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.0
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	97.95
COG3202	509	ATP/ADP translocase [Energy production and convers	97.93
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	97.91
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	97.86
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	97.84
PF12832	77	MFS_1_like: MFS_1 like family	97.73
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	97.71
TIGR00805	633	oat sodium-independent organic anion transporter.	97.66
KOG2615	451	consensus Permease of the major facilitator superf	97.63
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	97.3
KOG2563	480	consensus Permease of the major facilitator superf	97.27
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.14
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	97.07
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.03
KOG3097	390	consensus Predicted membrane protein [Function unk	96.99
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	96.98
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	96.94
PRK03612	521	spermidine synthase; Provisional	96.85
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	96.73
KOG3880	409	consensus Predicted small molecule transporter inv	96.65
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	96.58
KOG3098	461	consensus Uncharacterized conserved protein [Funct	96.57
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	96.52
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	95.92
KOG2325	488	consensus Predicted transporter/transmembrane prot	95.8
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	95.69
KOG2601	503	consensus Iron transporter [Inorganic ion transpor	95.39
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	95.34
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	95.09
KOG4830	412	consensus Predicted sugar transporter [Carbohydrat	94.63
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	94.5
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	93.96
COG0477	338	ProP Permeases of the major facilitator superfamil	92.59
KOG0637	498	consensus Sucrose transporter and related proteins	91.59
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	90.34
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	89.04
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	88.75
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	88.08
KOG3880	409	consensus Predicted small molecule transporter inv	82.65
PRK03612	521	spermidine synthase; Provisional	82.29

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=100.00  E-value=1e-32  Score=268.12  Aligned_cols=358  Identities=13%  Similarity=0.055  Sum_probs=274.4

Q ss_pred             chhHHHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHH
Q 013991           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (432)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~  119 (432)
                      +..+..+.+..++..++..+++..+|.+.+++|.+.++      .+|+.+.|.++..++.+++|+++||+|||++++++.
T Consensus         5 ~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~------~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~   78 (495)
T PRK14995          5 WLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNE------LLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGG   78 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            34566788899999999999999999999999999999      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHhhhccchhhH-Hhhhhhhc-ccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccC
Q 013991          120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIF-REEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (432)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  197 (432)
                      +++.++++++++++|++.++++|+++|++.+...+. ...+.+.+ |+++|++++++......+|..+||.+++++.+  
T Consensus        79 ~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~--  156 (495)
T PRK14995         79 TLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLE--  156 (495)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--
Confidence            999999999999999999999999999998887775 67776665 78999999999999999999999999999998  


Q ss_pred             CcCCCcccccccccCccchHHHHHHHHHHHHH-HHHHhhcccccCCCCCCCcchhhhH---------HHhhhhhh-----
Q 013991          198 EKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSY---------DALESASA-----  262 (432)
Q Consensus       198 ~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~---------~~~~~~~~-----  262 (432)
                           .+|||+.         +++.....++. ++..+.+||++++++++.+......         ...++..+     
T Consensus       157 -----~~gwr~~---------f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~  222 (495)
T PRK14995        157 -----HFYWGSV---------FLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSL  222 (495)
T ss_pred             -----cCChHHH---------HHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCch
Confidence                 4555544         46555444443 3444567775543222211111000         00000000     


Q ss_pred             -----------------hhhhhhccCCCCccccccchhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchh
Q 013991          263 -----------------EVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMV  325 (432)
Q Consensus       263 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~  325 (432)
                                       ...|.+.+.+....+++|++.+....+..++......+...++|.|++..     +|+++.++
T Consensus       223 ~~~~~~~~~~~~~l~~f~~~e~~~~~p~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v-----~g~s~~~a  297 (495)
T PRK14995        223 WVTSLTLLTGALLLGLFIRTQLAASRPMIDMRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFV-----HGLSPLEA  297 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCHHHH
Confidence                             01122333445556789999888877777777777777777889888876     69999999


Q ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHHhChhHHHHHHHHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHH
Q 013991          326 GEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLF  405 (432)
Q Consensus       326 g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (432)
                      |..+.+..++..++. ++.+++.||+++|+.+..+..+..++..++.......+  .+ .......+.+++.+...+...
T Consensus       298 g~~~~~~~~~~~~~~-~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~--~~-~~~~~~~l~G~g~g~~~~~~~  373 (495)
T PRK14995        298 GMFMLPVMVASGFSG-PIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQ--QW-QAWGLMALLGFSAASALLAST  373 (495)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCc--hH-HHHHHHHHHHHhHHHHHHHHH
Confidence            999999999999988 68999999999999888887777666655543322121  11 223445566677777777888


Q ss_pred             HHHhccccccchhhhhhHHHHHh
Q 013991          406 ILQNRAVVRVLTYTLSCHFWFVK  428 (432)
Q Consensus       406 ~~~~~~~p~~~~g~~~~~~~~~~  428 (432)
                      ....+.+|+++++.+++.+++.+
T Consensus       374 ~~~~~~~~~~~~g~~~~~~~~~~  396 (495)
T PRK14995        374 SAIMAAAPPEKAAAAGAIETMAY  396 (495)
T ss_pred             HHHHhcCCHHhcchHHHHHHHHH
Confidence            88888999999999999988876

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=8.1e-33  Score=249.88  Aligned_cols=288  Identities=20%  Similarity=0.216  Sum_probs=245.3

Q ss_pred             CCCchhHHHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHH
Q 013991           37 GLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII  116 (432)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~  116 (432)
                      +..+..++.+.++.|............+|++.+|+|+|..+      .|+..+.|.++..+++|+...++||+.||++++
T Consensus         9 ~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~------aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl   82 (394)
T COG2814           9 KPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGA------AGQLITAYALGVALGAPLLALLTGRLERRRLLL   82 (394)
T ss_pred             ccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHcccchHHHHH
Confidence            45567788899999999999999999999999999999999      999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcc
Q 013991          117 MGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (432)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (432)
                      ..+.++.++++++++++||+.++++|++.|+..|.+.+. .++.+++.|+++|++++++...+.+++.++|.++|.++.+
T Consensus        83 ~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~  162 (394)
T COG2814          83 GLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQ  162 (394)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            999999999999999999999999999999999998886 9999999999999999999999999999999999999999


Q ss_pred             cCCcCCCcccccccccCccchHHHHHHHHHHHHHHH-HHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhccCCCC
Q 013991          196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATP  274 (432)
Q Consensus       196 ~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (432)
                             .+         +||.+|.+.+.++++.++ .+..+|  |+...++.+                     .+...
T Consensus       163 -------~~---------GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~~~~~~---------------------~~~~~  203 (394)
T COG2814         163 -------LF---------GWRATFLAIAVLALLALLLLWKLLP--PSEISGSLP---------------------GPLRT  203 (394)
T ss_pred             -------Hh---------hHHHHHHHHHHHHHHHHHHHHHhCC--CccCCCCCC---------------------cchhH
Confidence                   44         455555788777777544 456678  221111110                     01123


Q ss_pred             ccccccchhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhChh
Q 013991          275 KKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPI  354 (432)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~  354 (432)
                      ..+.+|+|.++...+...+.....+...+++..++++.     .|++.+..++.+..+++++++++ .+++++.|| +.+
T Consensus       204 ~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v-----~g~s~~~vs~~Ll~~Gv~~~~Gn-~~gGrl~dr-~~~  276 (394)
T COG2814         204 LLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESV-----AGFSVSAVSLVLLAFGIAGFIGN-LLGGRLADR-GPR  276 (394)
T ss_pred             HHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHc-----cCCCHhHHHHHHHHHHHHHHHHH-HHHhhhccc-cch
Confidence            45678999999998888888887777777877787776     69999999999999999999999 599999999 888


Q ss_pred             HHHHHHHHHHHHHHHHhhHHHh
Q 013991          355 MVARIAGVLTIPLLTSYPYIAM  376 (432)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~  376 (432)
                      +.+.....+..+.++.+.+...
T Consensus       277 ~~l~~~~~l~a~~~l~l~~~~~  298 (394)
T COG2814         277 RALIAALLLLALALLALTFTGA  298 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcc
Confidence            8888777777776666655543

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=100.00  E-value=1.1e-31  Score=256.84  Aligned_cols=344  Identities=13%  Similarity=0.066  Sum_probs=234.2

Q ss_pred             hHHHHHHHHHHhhccccchhhhHHHHHHHhcCC---ccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHH
Q 013991           42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIA---KREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (432)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s---~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~  118 (432)
                      .+...+++.+++.++...+....|.+.++++.+   ..+   ....+...+...++..++++++|+++||+|||+++.++
T Consensus        23 ~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~   99 (432)
T PRK10406         23 AIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQ---LLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLIS   99 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            344566778899999999999999999998643   322   00123344455566669999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhHH--------HHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHH
Q 013991          119 TASVVIFNTLFGLSVNFW--------MAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPAL  189 (432)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~--------~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~  189 (432)
                      .++++++++++++++++.        .+++.|+++|++.|...+. .++++|++|+++|++..+..+.+...|..+++.+
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~  179 (432)
T PRK10406        100 VCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLV  179 (432)
T ss_pred             HHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999988764        6899999999998887775 9999999999999999999988888888888877


Q ss_pred             HhhhcccCCcCCCcccccccccCccchHHHHHHHHHHHHHHHHHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhc
Q 013991          190 GGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEG  269 (432)
Q Consensus       190 ~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (432)
                      ...+.....+        .....++||.+|.+.+++.++.++....+||++++++++                     + 
T Consensus       180 ~~~~~~~~~~--------~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~~---------------------~-  229 (432)
T PRK10406        180 VVVLQQTLED--------AELREWGWRIPFALGAVLAVVALWLRRQLDETSQQETRA---------------------L-  229 (432)
T ss_pred             HHHHHHhCCH--------HHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHHhh---------------------h-
Confidence            6655431000        000145677777887777666554444566654321100                     0 


Q ss_pred             cCCCCccccccchhHHHHHHHHHHH-HHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHH
Q 013991          270 REATPKKSLLKNWPLMSSIIVYCVF-SLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLE  348 (432)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~  348 (432)
                      ++..+.++++|+++.+...+...+. ......+..++|.|+.+.     +|++..+.+.......+...+++ .+.+++.
T Consensus       230 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~-----~g~s~~~~~~~~~i~~~~~~i~~-~~~G~l~  303 (432)
T PRK10406        230 KEAGSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNT-----AGMHANVASGIMTAALFVFMLIQ-PLIGALS  303 (432)
T ss_pred             cccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence            0112456677888776655544432 455666777888888665     68888888888888788877777 4779999


Q ss_pred             HHhChhHHHHHHHHHHHHHHHHhhH-HHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHHHH
Q 013991          349 RILGPIMVARIAGVLTIPLLTSYPY-IAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWFV  427 (432)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~  427 (432)
                      ||++||+...++.++..+....+.. ...... . +. ......+..+..+...+....+.+|.+|++.|+++.|+.+.+
T Consensus       304 Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~-~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~  380 (432)
T PRK10406        304 DKIGRRTSMLCFGSLAALFTVPILSALQNVSS-P-YA-AFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAV  380 (432)
T ss_pred             HHcCchHHHHHHHHHHHHHHHHHHHHHHcCCc-H-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHH
Confidence            9999998876665543332221111 111111 1 11 111111111122223345667889999999999999998754

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=100.00  E-value=5.3e-32  Score=251.89  Aligned_cols=316  Identities=14%  Similarity=0.054  Sum_probs=224.7

Q ss_pred             hccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHhhhh
Q 013991           54 ALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSV  133 (432)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~  133 (432)
                      ......+.+.+|.+.+|+|.|+.+      .|++.+.+.+++.+++++.|+++||+|||+++..+......+......++
T Consensus         4 ~~~~~~~~~~lp~i~~~~~~s~~~------~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~   77 (368)
T TIGR00903         4 QAIWVTFSPVLSLVAEDIDVSKEE------LGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPF   77 (368)
T ss_pred             hHHHHHHHhhHHHHHHHhCcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhc
Confidence            344566789999999999999999      99999999999999999999999999999987766555555443333347


Q ss_pred             hHHHHHHHHHHHhhhccchhhHHhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCcCCCcccccccccCc
Q 013991          134 NFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKF  213 (432)
Q Consensus       134 ~~~~l~~~r~~~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~  213 (432)
                      +++.+++.|+++|++.+...+....++|++|+++|++++++.+.+..+|.++++.+++++.+       .+|        
T Consensus        78 ~~~~l~~~R~l~G~g~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~-------~~g--------  142 (368)
T TIGR00903        78 NYEWLLACQLLAALGQPFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYT-------AGG--------  142 (368)
T ss_pred             cHHHHHHHHHHHHhHhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------ccc--------
Confidence            99999999999999988765566777999999999999999999999999999999999987       344        


Q ss_pred             cchHHHHHHHHHHHH-HHHHHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhccCCCCccccccchhHHHHHHHHH
Q 013991          214 PYFLPCLCISLFAFG-VTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYC  292 (432)
Q Consensus       214 ~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (432)
                       ||..+++.+++.++ .++..+.+||+|++++++.+    . +       +   .    .+..++++|+|.++...+.++
T Consensus       143 -Wr~~f~~~~~l~~~~~~~~~~~lp~~p~~~~~~~~----~-~-------~---~----~~~~~~ll~~~~~~~~~~~~~  202 (368)
T TIGR00903       143 -LQLLIIPIAAVAAAGIILVLAALPALPFQAAEGFG----F-K-------D---A----VKEFGALAGRKDLWIIGAILG  202 (368)
T ss_pred             -hHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcc----h-H-------H---H----HHHHHHHHcChhHHHHHHHHH
Confidence             55555776665554 44456678987754321110    0 0       0   0    012467889999999999999


Q ss_pred             HHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhCh---hHH-HHHHHHHHHHHH
Q 013991          293 VFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGP---IMV-ARIAGVLTIPLL  368 (432)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~-~~~~~~~~~~~~  368 (432)
                      +......++.++.|.|+.+.      |++.. .+.......+.+.++.    +++.||.+|   |+. ......+..+.+
T Consensus       203 ~~~~~~~~~~~wlp~~L~~~------g~s~~-~~~~~~l~~~~g~~g~----~~~~d~~~r~~~r~~~~~~~~~~~a~~~  271 (368)
T TIGR00903       203 FGVALFDNLAIWLEAALRPA------GLEDI-AGDAVALAILAGLIGV----AVIPDRVARAGLRSIYIRAAALLIAAFF  271 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHC------CCChH-HHHHHHHHHHHHHHHH----HHhhHHhhhhhhHHHHHHHHHHHHHHHH
Confidence            98988999999999999652      55643 5666666555555554    455555543   232 222333333333


Q ss_pred             HHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHHHH
Q 013991          369 TSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWFV  427 (432)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~  427 (432)
                      ..++.....     + .......+.+++....++..+++.+|..|++.||++.|..+..
T Consensus       272 ~~~~~~~~~-----~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~  324 (368)
T TIGR00903       272 LALAFELNR-----L-ALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFT  324 (368)
T ss_pred             HHHHHcccc-----H-HHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHH
Confidence            332222111     1 1222333344455666677888999999999999999998863

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=100.00  E-value=1.2e-31  Score=254.75  Aligned_cols=363  Identities=12%  Similarity=0.018  Sum_probs=252.6

Q ss_pred             CCchhHHHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHH
Q 013991           38 LPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM  117 (432)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~  117 (432)
                      .+|+.+..+++..++++++........|.+.+|+|.+..+      .|++.+++.+++.+++++.|+++||+|||+++..
T Consensus         5 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~------~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~   78 (412)
T TIGR02332         5 LFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATM------FGLAATLFYAAYVICGIPSNIMLAIIGARRWIAG   78 (412)
T ss_pred             ehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHH------HHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHH
Confidence            3556677888888999999999999999999999999999      9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhccc
Q 013991          118 GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP  196 (432)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  196 (432)
                      +.++..++.+++++++|++++++.|++.|++.+...+. ..++.|++|+++|++++++++.+.++|.++++.+++++.+.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~  158 (412)
T TIGR02332        79 IMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILAL  158 (412)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999998888776 78899999999999999999999999999999999988641


Q ss_pred             CCcCCCcccccccccCccchHHHHHHHHHHHH-HHHHHhhcccccCCCCCCCcc-hhhhHHHhhhhhhh---hhhhhccC
Q 013991          197 AEKYPNLFSSESLFGKFPYFLPCLCISLFAFG-VTIAAFWLPETLHRHNDDDDS-CDVSYDALESASAE---VKEEEGRE  271 (432)
Q Consensus       197 ~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~  271 (432)
                      .+ ..+         .++||..+.+.++..++ .++..+++||+|++.+.-.++ ++...+..+....+   .++..+++
T Consensus       159 ~~-~~~---------~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (412)
T TIGR02332       159 DG-LMA---------LKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEGAFAHA  228 (412)
T ss_pred             CC-CCC---------ccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhccccccccccccccc
Confidence            10 001         23455555776666654 344556778887543211111 11110111100000   00000000


Q ss_pred             C----CCccccccchhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHH
Q 013991          272 A----TPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFL  347 (432)
Q Consensus       272 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l  347 (432)
                      +    ..++.++ ++.++...+.+++.......+..++|.|+++.    +.+++..+++.......++..++. ++.+++
T Consensus       229 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~----~~~~s~~~~~~~~~~~~l~~~~g~-l~~g~l  302 (412)
T TIGR02332       229 AMPQRSMLREIF-TPAIMLYTLAYFCLTNTLSAINIWTPQILQSF----NQGSSNIMIGLLAAIPQFCTIFGM-IWWSRH  302 (412)
T ss_pred             cccHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCCcHHHhHHHhhHHHHHHHHHH-HHHHHH
Confidence            0    1123333 46777777777777777778888999998762    146678888999999999999988 599999


Q ss_pred             HHHhChhHH-HHHHHHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHHH
Q 013991          348 ERILGPIMV-ARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWF  426 (432)
Q Consensus       348 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~  426 (432)
                      +||+++|+. .........+.+.+. ...  ....  . ......+..++.....+.......+..|+++|+++.|..+.
T Consensus       303 ~dr~~~r~~~~~~~~~~~~~~~~~~-~~~--~~~~--~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~  376 (412)
T TIGR02332       303 SDRLKERKHHTALPYLFAAAGWLLA-SAT--DHNL--I-QLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINA  376 (412)
T ss_pred             hcccCccHHHHHHHHHHHHHHHHHH-Hhc--CCHH--H-HHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHH
Confidence            999987664 333333333332221 111  1111  1 11111111122222233444555677899999999998886


Q ss_pred             Hh
Q 013991          427 VK  428 (432)
Q Consensus       427 ~~  428 (432)
                      ..
T Consensus       377 ~~  378 (412)
T TIGR02332       377 TG  378 (412)
T ss_pred             hh
Confidence            54

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=100.00  E-value=5.9e-33  Score=242.53  Aligned_cols=350  Identities=37%  Similarity=0.559  Sum_probs=252.7

Q ss_pred             ccchhhhHHHHHHHhcCCccccc--hhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHhhhhh
Q 013991           57 ISSLFPFLYFMIKDFQIAKREED--IGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVN  134 (432)
Q Consensus        57 ~~~~~~~~~~~~~~~~~s~~~~~--~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~  134 (432)
                      .....+......++|+.-..+.+  ...+.|.+.+.+++.+.+.++.+|.++||+|||++++++++..++...+.+.+.|
T Consensus        41 ~~~L~~~~~~~V~~F~~a~~~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~  120 (451)
T KOG2615|consen   41 VSSLYPFVVFMVRDFNIAIGEPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRN  120 (451)
T ss_pred             ccchhHHHHHhhHHHHHhhCCcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555566677776555544  6788999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhccchhhHHhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCcCCCcccccccccCcc
Q 013991          135 FWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFP  214 (432)
Q Consensus       135 ~~~l~~~r~~~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~  214 (432)
                      +..++++|++.|+..|...+..++++|++++|+|+++++.++.++++|.++||.+||++.+..          ..++++.
T Consensus       121 F~afv~aR~l~Gi~kgnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~----------~~~g~~p  190 (451)
T KOG2615|consen  121 FAAFVLARFLGGIFKGNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFS----------SISGSYP  190 (451)
T ss_pred             HHHHHHHHHhhhhccCchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhH----------hhhccCc
Confidence            977777799999999999999999999999999999999999999999999999999998711          1122445


Q ss_pred             chHHHHHHHHHHHH-HHHHHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhccCCCCccccccchhHHHHHHHHHH
Q 013991          215 YFLPCLCISLFAFG-VTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCV  293 (432)
Q Consensus       215 ~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (432)
                      +..|.++..+.... .....+++||+-+.+++. ++.....+..++.    .+..+.+.......+||++....+..+..
T Consensus       191 ~alP~~~v~i~a~~~v~~~~~~lpETL~~rk~~-~~~~~~~~~~~~~----~~~~~~~~~~~v~~lrn~p~~~~i~~~~i  265 (451)
T KOG2615|consen  191 FALPCLLVFILAAGDVTFFPWFLPETLPLRKRN-DEHSTLQEAADDR----LALLKFARIFKVAALRNPPLLDFISVLRI  265 (451)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhCCccccchhhc-ccccchhhhhhhh----hhhcchhhhhhhhhhcCccccchHHHHHH
Confidence            55555555555554 455668899997665544 1111111111111    11111111222345566665555555555


Q ss_pred             HHHHhhhHHHHHHhhhcCCCcC--CCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhC-hhHHHHHHHHHHHHHHHH
Q 013991          294 FSLHDMAYSEIFSLWANSPKKL--GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG-PIMVARIAGVLTIPLLTS  370 (432)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~--~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~  370 (432)
                      +......+..+++.+.......  +++|+++.+.|.+++..++.+.+.+..+.+++.+..+ .+-.+..+..++...+++
T Consensus       266 ~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~ll  345 (451)
T KOG2615|consen  266 FGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLL  345 (451)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHH
Confidence            5555566666666555444333  5699999999999999999999888655554433332 223334444444444555


Q ss_pred             hhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHHHH
Q 013991          371 YPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWFV  427 (432)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~  427 (432)
                      +......      ..++++..+..+..+...++.+.++++..|.++||+++|++..+
T Consensus       346 ls~~~~~------~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl  396 (451)
T KOG2615|consen  346 LSLARTP------VVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSL  396 (451)
T ss_pred             Hhccccc------hhhhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHH
Confidence            4444332      36778888888899999999999999999999999999998765

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=100.00  E-value=1.3e-31  Score=261.06  Aligned_cols=357  Identities=14%  Similarity=0.154  Sum_probs=269.9

Q ss_pred             hHHHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHH
Q 013991           42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (432)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~  121 (432)
                      .+..+.+..++..++.....+..|.+.+++|.+.++      .+++.+.+.++..++.++.|+++||+|||++++++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~   76 (485)
T TIGR00711         3 LTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQ------VQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFA   76 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhh------hhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHH
Confidence            345667788888889999999999999999999998      99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCcC
Q 013991          122 VVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY  200 (432)
Q Consensus       122 ~~~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~  200 (432)
                      ..++.++++.+++++.+++.|+++|++.+...+. .+++.|++|+++|++++++.+....+|..+||.+++++.+     
T Consensus        77 ~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-----  151 (485)
T TIGR00711        77 FTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIE-----  151 (485)
T ss_pred             HHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhcc-----
Confidence            9999999999999999999999999998888775 9999999999999999999999999999999999999987     


Q ss_pred             CCcccccccccCccchHHHHHHHHHHHHHH-HHHhhcccccCCCCCCCcchhhhH------------HHh-hhhhh----
Q 013991          201 PNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSY------------DAL-ESASA----  262 (432)
Q Consensus       201 ~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~------------~~~-~~~~~----  262 (432)
                        .+|||+.|         .+.+...++.. +..+.+||+++..+++.+......            ++. ++...    
T Consensus       152 --~~~w~~~f---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~  220 (485)
T TIGR00711       152 --NYHWRWIF---------LINVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNE  220 (485)
T ss_pred             --CcCceehh---------hhhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchH
Confidence              55665554         55444444333 334456664432222111110000            000 00000    


Q ss_pred             ---------------hhhhhhccCCCCccccccchhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhH
Q 013991          263 ---------------EVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGE  327 (432)
Q Consensus       263 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~  327 (432)
                                     ..++.+.+++....+.+++++++...+..++..+.......++|.|+++.     +|+++.+.+.
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-----~g~s~~~~g~  295 (485)
T TIGR00711       221 ILILSITGLVAIIAFVVWELTDDNPLVDLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQV-----LGYTALQAGL  295 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCccCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHH
Confidence                           00122223344445678899888887777777777777888889998876     6899999999


Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHhChhHHHHHHHHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 013991          328 VLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFIL  407 (432)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (432)
                      ......++..++. ++.+++.||+++|+.+..+..+..++..++.+......  ..........+.+++.+...+.....
T Consensus       296 ~~~~~~~~~~~~~-~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~g~g~~~~~~~~~~~  372 (485)
T TIGR00711       296 HILPVGLAPMLSS-PIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDT--PFLAIALPQFIRGFGMGCFFMPLTTI  372 (485)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999888 58899999999999988888777776665542111111  11122333455566666666666777


Q ss_pred             HhccccccchhhhhhHHHHHh
Q 013991          408 QNRAVVRVLTYTLSCHFWFVK  428 (432)
Q Consensus       408 ~~~~~p~~~~g~~~~~~~~~~  428 (432)
                      ..+..|++++|++++.+++.+
T Consensus       373 ~~~~~~~~~~g~~~~~~~~~~  393 (485)
T TIGR00711       373 ALSGLPPHKIARGSSLSNFTR  393 (485)
T ss_pred             HHhcCCHHHHhHHHHHHHHHH
Confidence            778899999999999998876

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=100.00  E-value=6.7e-32  Score=267.27  Aligned_cols=365  Identities=15%  Similarity=0.120  Sum_probs=261.4

Q ss_pred             HHHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHH
Q 013991           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV  122 (432)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~  122 (432)
                      ++.+.++.+..+++...+...+|.+.++++.+..+      .+++.+++.++.+++++++|+++||+|||+++++++++.
T Consensus       169 ~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~------~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~  242 (742)
T TIGR01299       169 FFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSG------KGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVN  242 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            33555566666777778888999999999999988      999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCcCC
Q 013991          123 VIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYP  201 (432)
Q Consensus       123 ~~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~  201 (432)
                      +++.++++++++++.++++|++.|++.|...+. .+++.|++|+++|++.++++..+..+|.++++.++..+..      
T Consensus       243 ~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~------  316 (742)
T TIGR01299       243 GFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIP------  316 (742)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence            999999999999999999999999998887775 9999999999999999999999999999999999988876      


Q ss_pred             Cccccccc----ccCccchHHHHHHHHHHHHHHHHHhhcccccCCCCCCCcchhhhH--HHhhhhh--------------
Q 013991          202 NLFSSESL----FGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSY--DALESAS--------------  261 (432)
Q Consensus       202 ~~~gw~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~--~~~~~~~--------------  261 (432)
                       .+||+..    +...+||..+++.++..++.++..+++||+|++...+.+..+...  .......              
T Consensus       317 -~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~  395 (742)
T TIGR01299       317 -HYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVN  395 (742)
T ss_pred             -hccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHH
Confidence             5666532    224578988888888877777778889999987544332221110  0000000              


Q ss_pred             ---hhhhhh-----hccCC------------------CCccccccchhH---HHHHHHHHHHHHHhhhHHHHHHhhhcCC
Q 013991          262 ---AEVKEE-----EGREA------------------TPKKSLLKNWPL---MSSIIVYCVFSLHDMAYSEIFSLWANSP  312 (432)
Q Consensus       262 ---~~~~~~-----~~~~~------------------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (432)
                         ....+.     +++..                  ..++.+++.+..   +...+.++...+.+.++..++|..+...
T Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~~yygl~~w~P~~~~~~  475 (742)
T TIGR01299       396 HIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGLSVWFPDMIKHL  475 (742)
T ss_pred             HHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               000000     00000                  012334444332   3445556666677788888888653210


Q ss_pred             ---C-------------c--------------CCCc------cc------------------------------------
Q 013991          313 ---K-------------K--------------LGGL------NY------------------------------------  320 (432)
Q Consensus       313 ---~-------------~--------------~~~~------g~------------------------------------  320 (432)
                         .             .              .+++      |+                                    
T Consensus       476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~  555 (742)
T TIGR01299       476 QADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTL  555 (742)
T ss_pred             HHHHHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhh
Confidence               0             0              0000      00                                    


Q ss_pred             -------------------------------------ccchhhHHHHHHHHHHHHHHHHhHHHHHHHhChhHHHHHHHHH
Q 013991          321 -------------------------------------STQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVL  363 (432)
Q Consensus       321 -------------------------------------s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  363 (432)
                                                           +.........+.+++.+++. ++.+++.||+|||+++.++.++
T Consensus       556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~-il~g~L~Dr~GRr~~l~~~~~l  634 (742)
T TIGR01299       556 FENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGN-IVSALLMDKIGRLRMLAGSMVL  634 (742)
T ss_pred             ccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCHHHHHHHHHH
Confidence                                                 00112333555667777887 5999999999999999999888


Q ss_pred             HHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHHHH
Q 013991          364 TIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWFV  427 (432)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~  427 (432)
                      .+++++++++.....      .+++..++.+++.....+....+++|.+|++.|+++.|+.+..
T Consensus       635 sai~~ll~~~~~s~~------~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~  692 (742)
T TIGR01299       635 SCISCFFLSFGNSES------AMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNAL  692 (742)
T ss_pred             HHHHHHHHHHHccHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence            888877766543322      1223334445566667788999999999999999999887654

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=100.00  E-value=2.6e-31  Score=252.93  Aligned_cols=359  Identities=13%  Similarity=0.123  Sum_probs=251.2

Q ss_pred             CCCchhHHHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHH
Q 013991           37 GLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII  116 (432)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~  116 (432)
                      +.+++.+...++..+.+.++.....+..|.+.+++|.+..+      .+++.+.+.++..+++++.|+++||+|||++++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~------~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~   81 (405)
T TIGR00891         8 RAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVD------AASLISAALISRWFGALMFGLWGDRYGRRLPMV   81 (405)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhh------HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence            34556677888999999999999999999999999999999      999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcc
Q 013991          117 MGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (432)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (432)
                      ++.++.+++.++++++++++.+++.|++.|++.+...+. .+++.|++|+++|+++.++.+.+..+|..+++.+++.+.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~  161 (405)
T TIGR00891        82 TSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVP  161 (405)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998887775 9999999999999999999999999999999999999886


Q ss_pred             cCCcCCCcccccccccCccchHHHHHHHHHHHHHHHHHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhc---cCC
Q 013991          196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEG---REA  272 (432)
Q Consensus       196 ~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  272 (432)
                             ..+       .+|+..+.+.++..++.++....+||+++++++++++++.. +..++...+....+.   +..
T Consensus       162 -------~~~-------~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  226 (405)
T TIGR00891       162 -------VWG-------DGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVR-TMVDILYGGEHRIANIVMTLA  226 (405)
T ss_pred             -------hcC-------ccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhh-hHHHHHhccchhhhhhhhhhh
Confidence                   222       12555556665555555555566777654322111110000 000000000000000   000


Q ss_pred             CCccccc-cch-hHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHH
Q 013991          273 TPKKSLL-KNW-PLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI  350 (432)
Q Consensus       273 ~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~  350 (432)
                      ...+... +++ .+...................++|.|+.+.     +|++..+.+.+.+..+++..++. ++.+++.||
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~s~~~~~~~~~~~~~~~~~g~-~~~g~l~dr  300 (405)
T TIGR00891       227 AAMVQSAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKAD-----LGLSPHTVANIVVFSNIGAIVGG-CVFGFLGDW  300 (405)
T ss_pred             HHhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            0001101 111 122222333333344445556677777654     68899999999999999999988 589999999


Q ss_pred             hChhHHHHHHHHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHHHH
Q 013991          351 LGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWFV  427 (432)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~  427 (432)
                      +++|+.+..+.....+........  ...  . ....+...+.+++.....+.....+.+..|+++|+++.|..+..
T Consensus       301 ~g~~~~~~~~~~~~~~~~~~~~~~--~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  372 (405)
T TIGR00891       301 LGRRKAYVCSLLAGQLLIIPVFAI--GAN--V-AVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQL  372 (405)
T ss_pred             hCchhhhHHHHHHHHHHHHHHHHh--CCc--h-HHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHH
Confidence            999998877766543322221111  111  1 12222323334445555667778889999999999999987764

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.8e-32  Score=244.11  Aligned_cols=349  Identities=17%  Similarity=0.117  Sum_probs=273.4

Q ss_pred             hhHHHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHH
Q 013991           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (432)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~  120 (432)
                      +.++.+++++...++.+..+....|.+.++.+.|.+|      .|++.+++.+.+.++..+.|.++||.+.|+.+.++++
T Consensus        29 qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~------lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLi  102 (448)
T COG2271          29 QIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQ------LGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLI  102 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHH
Confidence            3455778888888888999999999999999999999      9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHhhhccchhh-HHhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHH--hhhcccC
Q 013991          121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG--GFLAQPA  197 (432)
Q Consensus       121 ~~~~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~--~~l~~~~  197 (432)
                      +.++.+++++++++.+.+.+..++.|..+|+-.| +...++.|++++|||+..++.+.+.++|..+.|++.  +++..  
T Consensus       103 lsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~--  180 (448)
T COG2271         103 LSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAF--  180 (448)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHh--
Confidence            9999999999999999999999999999999877 499999999999999999999999999999999999  78776  


Q ss_pred             CcCCCcccccccccCccchHHHHHHHHHHHH-HHHHHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhcc-----C
Q 013991          198 EKYPNLFSSESLFGKFPYFLPCLCISLFAFG-VTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGR-----E  271 (432)
Q Consensus       198 ~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~  271 (432)
                           +++         |+..|+.-++++++ .++.++..+++|+..--.+- ++...+..+..    ++++++     .
T Consensus       181 -----~~~---------w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~i-e~~~~d~~e~~----~~~~~~~~ls~~  241 (448)
T COG2271         181 -----HGG---------WRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPI-EEYRGDPLEIY----EEEKENEGLTAW  241 (448)
T ss_pred             -----ccc---------hhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCH-HHhhcCchhhh----hhhccCCCccHH
Confidence                 334         44445777766665 55556677777765322111 11110111110    111111     1


Q ss_pred             CCCccccccchhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHh
Q 013991          272 ATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL  351 (432)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~  351 (432)
                      ....+.+++||.+|.+.+.+.+.+.+-.+...+-|+|+.+.     .|+|..+++...+.+-.+++++. ++.||++||+
T Consensus       242 ~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~-----k~~s~~~a~~a~~lfE~agl~G~-Ll~GwlSDkl  315 (448)
T COG2271         242 QIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEV-----KGFSLVKANWAISLFEVAGLPGT-LLAGWLSDKL  315 (448)
T ss_pred             HHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh-----cCCCHHHHHHHHHHHHHHhhHHH-HHHHHHHHHh
Confidence            23456778999999999999999999999999999999987     79999999999999999999998 5999999996


Q ss_pred             --ChhHHHHHH-HHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHHH
Q 013991          352 --GPIMVARIA-GVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWF  426 (432)
Q Consensus       352 --~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~  426 (432)
                        |||....+. ++...++++.+-..+..    .+.+..+..++.|++..+.....-....|.+|++..|+++|..-+
T Consensus       316 fkgrR~p~~~i~~~~i~~~~~~~w~~~~~----~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Gl  389 (448)
T COG2271         316 FKGRRGPMALIFMLLITASLVLYWLAPNG----SYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGL  389 (448)
T ss_pred             cccccchHHHHHHHHHHHHHHHHHcCCCc----cHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhh
Confidence              455444433 33333333333222222    334555666667777777777777788999999999999987654

>TIGR00900 2A0121 H+ Antiporter protein

Probab=100.00  E-value=1.9e-31  Score=250.21  Aligned_cols=336  Identities=15%  Similarity=0.072  Sum_probs=256.5

Q ss_pred             HHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHH
Q 013991           46 IWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF  125 (432)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~  125 (432)
                      +....++..++.....+.+|.+..+++.+..+      .+++.+++.++..+++++.|+++||+|||+++..+.++..++
T Consensus         4 l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~   77 (365)
T TIGR00900         4 LFAAQLISLIGTAITQVALPLYVLAGTGSASV------LSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVL   77 (365)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH------HHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHH
Confidence            45667777888888889999999999999988      999999999999999999999999999999999999999998


Q ss_pred             HHHHhhhh-----hHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCc
Q 013991          126 NTLFGLSV-----NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK  199 (432)
Q Consensus       126 ~~~~~~~~-----~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~  199 (432)
                      .++..+++     +++.+++.|++.|++.+...+. .+++.|++|+++|++.+++.+.+..+|.++||.+++.+.+    
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~----  153 (365)
T TIGR00900        78 VAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYA----  153 (365)
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----
Confidence            88888887     9999999999999998888876 9999999999999999999999999999999999999987    


Q ss_pred             CCCcccccccccCccchHHHHHHHHHHHHHHHHHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhccCCCCccccc
Q 013991          200 YPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLL  279 (432)
Q Consensus       200 ~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (432)
                                  .++|+..+.+.++..++..+..+.++++++.++++++.++..              .++.....+..+
T Consensus       154 ------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~  207 (365)
T TIGR00900       154 ------------TLGIKWAIWVDAVGFAISALLIVSVRIPELAASEIQALSNAV--------------LRDTREGIKFVL  207 (365)
T ss_pred             ------------HhhHHHHHHHHHHHHHHHHHHHHhcccccCCCccccccchhH--------------HHHHHhHHHHHH
Confidence                        344555556665555444433333322111111111000000              000011345567


Q ss_pred             cchhHHHHHHHHHHHHHHhhhHH-HHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhChhHHHH
Q 013991          280 KNWPLMSSIIVYCVFSLHDMAYS-EIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVAR  358 (432)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  358 (432)
                      |+|.++......++......... .+.|.|..+.     +|.++.+.+......+++..++. ++.+++.||.++++...
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~  281 (365)
T TIGR00900       208 KNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKY-----LGRGSTHYGWVLAAFGLGALLGA-LLLGLLGRYFKRMALMT  281 (365)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----hCCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHhchhHHHH
Confidence            78888777776666666555554 6777777654     68889999999999999998887 57889999999999888


Q ss_pred             HHHHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHHHHh
Q 013991          359 IAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWFVK  428 (432)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~~  428 (432)
                      .+..+..+.+....+... +    .....+..++.+++.+...+...++..+.+|+++|+++.+.++...
T Consensus       282 ~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  346 (365)
T TIGR00900       282 GAIFVIGLAILVVGLTPP-N----FPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLS  346 (365)
T ss_pred             HHHHHHHHHHHHHHhhch-h----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            776666666555544332 1    2234455566677777788889999999999999999999988764

>TIGR00893 2A0114 d-galactonate transporter

Probab=100.00  E-value=1.8e-31  Score=253.08  Aligned_cols=347  Identities=15%  Similarity=0.105  Sum_probs=249.5

Q ss_pred             HHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHh
Q 013991           51 LCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFG  130 (432)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~  130 (432)
                      ++..++...+....|.+.+++|.+..+      .+++.+++.++..++.++.|+++||+|||+++.++.++.+++.++++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~g~s~~~------~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~   77 (399)
T TIGR00893         4 VINYLDRANLSFAAPMLQEDLGLSAAQ------YGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQA   77 (399)
T ss_pred             hHHHHHHHhhhHhHHHHHHhhCCChhh------HHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHH
Confidence            345566677788889999999999999      99999999999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCcCCCccccccc
Q 013991          131 LSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESL  209 (432)
Q Consensus       131 ~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~  209 (432)
                      ++++++.+++.|++.|++.+...+. .+++.|++|+++|++.+++.+...++|..++|.+++.+.+              
T Consensus        78 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~--------------  143 (399)
T TIGR00893        78 FAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILI--------------  143 (399)
T ss_pred             HHcCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH--------------
Confidence            9999999999999999998887776 9999999999999999999999999999999999999887              


Q ss_pred             ccCccchHHHHHHHHHHHHHHHH-HhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhccCCCCccccccchhHHHHH
Q 013991          210 FGKFPYFLPCLCISLFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSI  288 (432)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (432)
                        ..+|+..+.+.++..++..+. .+..||++++.+...++++....+....+.+.++++++.....++.+++++++...
T Consensus       144 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (399)
T TIGR00893       144 --HFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLA  221 (399)
T ss_pred             --hCCchHHHHHHHHHHHHHHHHhhheecCCCCccccCCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHH
Confidence              344555556666655554333 34556654432221111111000000000001111222334466788899998888


Q ss_pred             HHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhChhHHHHH-HHHHHHHH
Q 013991          289 IVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARI-AGVLTIPL  367 (432)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~  367 (432)
                      +..++..........+.|.|..+.     +|.++.+.+.+.....+..+++. ++.+++.||+++|+.... ........
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~  295 (399)
T TIGR00893       222 LGQFLVNIGLGFFLTWFPTYLVQE-----RGLSILEAGFMASLPGIVGFIGM-ILGGRLSDLLLRRGKSLVFARKTAIIA  295 (399)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHH-----hcccHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHhhcccchhHHHHHHHHH
Confidence            888888888888888899888765     68889999999999999998888 588999999998851111 11111111


Q ss_pred             ---HHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHHHHh
Q 013991          368 ---LTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWFVK  428 (432)
Q Consensus       368 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~~  428 (432)
                         ............ .. . ........+.+..+..+....+..|..|+++|+++.+.+....
T Consensus       296 ~~~~~~~~~~~~~~~-~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  356 (399)
T TIGR00893       296 GLVLSLLMFATNYVN-IP-Y-AALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLG  356 (399)
T ss_pred             HHHHHHHHHHhccch-hH-H-HHHHHHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHH
Confidence               111111111010 11 1 1222222233344478889999999999999999999887754

>PRK03545 putative arabinose transporter; Provisional

Probab=100.00  E-value=5.9e-31  Score=248.88  Aligned_cols=328  Identities=15%  Similarity=0.113  Sum_probs=235.1

Q ss_pred             chhHHHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHH
Q 013991           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (432)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~  119 (432)
                      +..++.+.+..+..........+.+|.+.+++|.++.+      .|+..+.+.+++.+++++.|+++||+|||+++..+.
T Consensus         8 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~------~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~   81 (390)
T PRK03545          8 WLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQ------VGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLF   81 (390)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHH
Confidence            33445555555554444445666789999999999999      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCC
Q 013991          120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE  198 (432)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~  198 (432)
                      ++.+++++++++++|++.+++.|+++|++.+...+. .+++.|++|+++|++++++.+.+.++|..+||.+++.+.+   
T Consensus        82 ~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~---  158 (390)
T PRK03545         82 VLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQ---  158 (390)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHH---
Confidence            999999999999999999999999999988887775 8999999999999999999999999999999999999987   


Q ss_pred             cCCCcccccccccCccchHHHHHHHHHHHHHHH-HHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhccCCCCccc
Q 013991          199 KYPNLFSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKS  277 (432)
Q Consensus       199 ~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (432)
                          .+|         |+..+.+.++..++..+ ....+||.+++++   +  +                    .+..++
T Consensus       159 ----~~g---------w~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~---~--~--------------------~~~~~~  200 (390)
T PRK03545        159 ----YLG---------WRTTFLAIGGGALITLLLLIKLLPLLPSEHS---G--S--------------------LKSLPL  200 (390)
T ss_pred             ----Hhc---------HHHHHHHHHHHHHHHHHHHHHhCCCCCCCCc---c--h--------------------HHHHHH
Confidence                344         45555666665554433 3344565432110   0  0                    012345


Q ss_pred             cccchhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhChhHHH
Q 013991          278 LLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVA  357 (432)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  357 (432)
                      .+|++.++......++..........+.+.+..+.     +|++..+.+.+....+++..+++ ++.+++.||.+++...
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~g~s~~~~~~~~~~~~~~~~~g~-~~~g~l~dr~~~~~~~  274 (390)
T PRK03545        201 LFRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQV-----AGLSENFATLLLLLFGGAGIIGS-VLFSRLGNRHPSGFLL  274 (390)
T ss_pred             HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCccHHHHHHHHHHHHHHHHH-HHHHHHhhccchhHHH
Confidence            67788776655554444444444445566666554     68899999999999999999998 5889999999877643


Q ss_pred             HHHHHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHHHH
Q 013991          358 RIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWFV  427 (432)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~  427 (432)
                       .+..+..+....+....  .+  . ..+.+...+.+++.....+.....+.+..| +.++++.|.+...
T Consensus       275 -~~~~~~~~~~~~l~~~~--~~--~-~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~  337 (390)
T PRK03545        275 -IAIALLLVCLLLLLPAA--NS--E-WHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGI  337 (390)
T ss_pred             -HHHHHHHHHHHHHHHHh--ch--H-HHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHH
Confidence             44333333333222111  11  1 123334444455555555666777777766 5778888876654

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=100.00  E-value=5.1e-32  Score=261.75  Aligned_cols=354  Identities=13%  Similarity=0.050  Sum_probs=244.5

Q ss_pred             HHHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHH
Q 013991           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV  122 (432)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~  122 (432)
                      +...++..++.+++...+.+..|.+.+++|.+..+      .|++.+++.+++.+++++.|+++||+|||+++.++.++.
T Consensus        31 ~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~------~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~  104 (467)
T PRK09556         31 YLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTE------LGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILS  104 (467)
T ss_pred             HHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHH
Confidence            33566677777888999999999999999999999      999999999999999999999999999999998888888


Q ss_pred             HHHHHHHhh-----hhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhccc
Q 013991          123 VIFNTLFGL-----SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP  196 (432)
Q Consensus       123 ~~~~~~~~~-----~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  196 (432)
                      +++.++.+.     +++++.+++.|+++|++.+...+. .++++|++|+++|++++++.+.+.++|.++++.+..++.+ 
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~-  183 (467)
T PRK09556        105 AICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGAN-  183 (467)
T ss_pred             HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHH-
Confidence            777766654     589999999999999998887775 8899999999999999999999999999999998877654 


Q ss_pred             CCcCCCcccccccccCccchHHHHHHHHHHHHH-HHHHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhccCC-C-
Q 013991          197 AEKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREA-T-  273 (432)
Q Consensus       197 ~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-  273 (432)
                            .+     + ..+|+..+.+.+++.++. ++..++.+++|++....++++... +...+.++ ..++++... . 
T Consensus       184 ------~~-----~-~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~  249 (467)
T PRK09556        184 ------YF-----F-DGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEEIFG-EPISEEDK-ETESTDMTKWQI  249 (467)
T ss_pred             ------hh-----c-cCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhccc-Cccchhhh-ccccccCcHHHH
Confidence                  11     0 112444445555544443 333444565543322111100000 00000000 000000000 0 


Q ss_pred             CccccccchhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhCh
Q 013991          274 PKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGP  353 (432)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~  353 (432)
                      ..+..+|++.++...+..++......+...+.|.|+++.     +|++..+++.......++.++++ ++.++++||+++
T Consensus       250 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~-----~g~s~~~a~~~~~~~~~~~~ig~-~~~G~lsDr~g~  323 (467)
T PRK09556        250 FVEYVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQE-----LGFSKEDAINTFTLFEIGALVGS-LLWGWLSDLANG  323 (467)
T ss_pred             HHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCC
Confidence            112367899999888888887777777888999998775     78999999999998889988888 699999999998


Q ss_pred             hHHHHHHHHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHHHH
Q 013991          354 IMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWFV  427 (432)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~  427 (432)
                      |+..........+....+.... ..+  . ....+..++.+++..+..........|..|++.+|+++|+.+..
T Consensus       324 r~~~~~~~~~~~~~~~~~~~~~-~~~--~-~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~  393 (467)
T PRK09556        324 RRALVACIALALIIFTLGVYQH-ATS--E-YMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTF  393 (467)
T ss_pred             CchHHHHHHHHHHHHHHHHHHh-cCc--H-HHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHH
Confidence            8876554433333222222111 111  1 11222233333332232223345667999999999999998755

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=100.00  E-value=4.3e-31  Score=246.48  Aligned_cols=338  Identities=24%  Similarity=0.341  Sum_probs=254.7

Q ss_pred             HHHHHHhhccccchhhhHH-HHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHH
Q 013991           47 WIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF  125 (432)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~  125 (432)
                      ++..++..+......+.+| .+.+++|.+..+      .+++.+++.++..+++++.|+++||+|||+++.++.++.+++
T Consensus         2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~   75 (352)
T PF07690_consen    2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQ------IGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALG   75 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHC------HHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhH
Confidence            4567778888888899999 889999999999      999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCcCCCcc
Q 013991          126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLF  204 (432)
Q Consensus       126 ~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~  204 (432)
                      .++..++++.+.+++.|++.|++.+...+. .+++.|++|+++|++++++.+...++|.+++|.+++.+.+       .+
T Consensus        76 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~-------~~  148 (352)
T PF07690_consen   76 SLLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLIS-------YF  148 (352)
T ss_dssp             HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------HC
T ss_pred             HHHhhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhh-------cc
Confidence            777667688889999999999998888776 9999999999999999999999999999999999999987       44


Q ss_pred             cccccccCccchHHHHHHHHHHHHHHHH-HhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhccCCC-Cccccccch
Q 013991          205 SSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREAT-PKKSLLKNW  282 (432)
Q Consensus       205 gw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  282 (432)
                      ||         +.++.+.++..++..+. ..++++++++++.++++++.             ++++++.. ..+..++++
T Consensus       149 ~~---------~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~  206 (352)
T PF07690_consen  149 GW---------RWAFLISAILSLIAAILFILFLPEPPPPRERESPKESE-------------SKKPKPLKPGFKSLFKNP  206 (352)
T ss_dssp             HH---------CCHHHHHHHHHHHHHHHHHCCC---STTTT--SSTTTT---------------HHHCCCH-CTHHHHHH
T ss_pred             cc---------ccccccccchhhhhhhhHhhhhhhcccccccccccccc-------------cccccccccccccccccc
Confidence            44         44447777666665443 34555554443332221110             00111112 256667777


Q ss_pred             hHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccc-cchhhHHHHHHHHHHHHHHHHhHHHHHHHhChhHHHHHHH
Q 013991          283 PLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYS-TQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG  361 (432)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s-~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  361 (432)
                      .++......+...+.......+.|.|..+.     +|++ ..+.+......++...+++ ++.+++.||+++++......
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~  280 (352)
T PF07690_consen  207 VLWILLIAFFLFFFVFSGFSFFLPLYLQEV-----LGFSGPSQAGLLFSIFGIVGIIGS-LLAGRLSDRFGRRRRLLIAI  280 (352)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHCCHH-----HHCCTHHHHHHHHHHHHHHHHHHH-HHHHHHHHHTTCHHHHHHHH
T ss_pred             hhhhhhhhhhHHHHHHHHhhcccchhhhhc-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCcHHHHHHHH
Confidence            776455555555556667888888886655     6888 7899999999999998887 58899999999877777666


Q ss_pred             HHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHHHHh
Q 013991          362 VLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWFVK  428 (432)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~~  428 (432)
                      ....+....+.......+   .........+.+++.+...+.......+.+|++++|++.|.+....
T Consensus       281 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~  344 (352)
T PF07690_consen  281 LLLILGALGLLLLPFSSS---PVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIG  344 (352)
T ss_dssp             HHHHHHHHHHCCSHHHCH---HHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            665555554444333311   1223334555666777788999999999999999999999988764

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=100.00  E-value=1.2e-30  Score=248.31  Aligned_cols=336  Identities=16%  Similarity=0.074  Sum_probs=249.7

Q ss_pred             CCchhHHHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHH
Q 013991           38 LPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM  117 (432)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~  117 (432)
                      .++..+...+...+++.++.....+..|.+.+++|.++++      .+++.+.+.++..+++++.|+++||+|||+++..
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~   85 (406)
T PRK11551         12 RLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQ------MGWAFSAGILGLLPGALLGGRLADRIGRKRILIV   85 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHH
Confidence            3344556777788888999999999999999999999999      9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhccc
Q 013991          118 GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP  196 (432)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  196 (432)
                      +.++..++.+++.++++++.+++.|++.|++.+...+. .+++.|++|+++|++++++.+.+..+|..+++.+++.+.+ 
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-  164 (406)
T PRK11551         86 SVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAG-  164 (406)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-
Confidence            99999999999999999999999999999998887775 8999999999999999999999999999999999988876 


Q ss_pred             CCcCCCcccccccccCccchHHHHHHHHHHHHH-HHHHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhccCCCCc
Q 013991          197 AEKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPK  275 (432)
Q Consensus       197 ~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (432)
                                     ..+|+..+.+.++..++. .+...++||++++.+++.++++.  +.                 ..
T Consensus       165 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~-----------------~~  210 (406)
T PRK11551        165 ---------------DAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQR--AP-----------------VL  210 (406)
T ss_pred             ---------------ccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhh--hh-----------------hH
Confidence                           344555556655544443 33445678876543221110000  00                 00


Q ss_pred             cccc---cchhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhC
Q 013991          276 KSLL---KNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG  352 (432)
Q Consensus       276 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~  352 (432)
                      +..+   +.+..+......+...........+.|.+..+      .|+++.+.+......+++.++++ ++.+++.||++
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~------~g~s~~~~~~~~~~~~~~~~~~~-~~~g~l~dr~g  283 (406)
T PRK11551        211 RALFGEGRATATLLLWISYFFTLIVLYFLLNWLPSLLVG------QGLSRSQAGLVQIAFNIGGALGS-LLIGALMDRLR  283 (406)
T ss_pred             HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCCChhhhhHHHHHHHHHHHHHH-HHHHHHHHHHh
Confidence            0011   11222223333333334444555667777755      48899999999999999999998 58899999999


Q ss_pred             hhHHHHHHHHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHHHH
Q 013991          353 PIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWFV  427 (432)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~  427 (432)
                      +++.+..+.+...+++..+.......      ...+..++.+++..+..+...++..+.+|+++|+++.|..+..
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~  352 (406)
T PRK11551        284 PRRVVLLIYAGILASLAALAAAPSFA------GMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAV  352 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHh
Confidence            99988776665555544443332111      2233444555566667788889999999999999999988764

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=100.00  E-value=3e-30  Score=243.89  Aligned_cols=338  Identities=17%  Similarity=0.153  Sum_probs=254.0

Q ss_pred             hhHHHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHH
Q 013991           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (432)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~  120 (432)
                      +..+.+....++...+.....+..|.+.+++|.++++      .+++.+.+.++..+++++.|+++||+|||+++..+.+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~   78 (385)
T TIGR00710         5 AFALLLGCLSILGPLGIDMYLPAFPEIAADLSTPASI------VQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLF   78 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHH
Confidence            4444555556667777888889999999999999999      9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCc
Q 013991          121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK  199 (432)
Q Consensus       121 ~~~~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~  199 (432)
                      +..++.+++.++++++.+++.|++.|++.+...+. .+++.|++|+++|++.+++.+....+|..++|.+++.+.+    
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~----  154 (385)
T TIGR00710        79 IFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILV----  154 (385)
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence            99999999999999999999999999998887775 9999999999999999999999999999999999999887    


Q ss_pred             CCCcccccccccCccchHHHHHHHHHHHHHHH-HHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhccCCCCcccc
Q 013991          200 YPNLFSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSL  278 (432)
Q Consensus       200 ~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (432)
                                  .++|+.++.+.++..++..+ ..+..||+++++++++  .+.                  .....++.
T Consensus       155 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~------------------~~~~~~~~  202 (385)
T TIGR00710       155 ------------WLSWHAIFAFLSLAGILLSALIFFILPETLPYEARIQ--IST------------------YFETFLLL  202 (385)
T ss_pred             ------------HcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccCC--HHH------------------HHHHHHHH
Confidence                        34455555666655554333 3445666543322110  000                  00123456


Q ss_pred             ccchhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhChhHHHH
Q 013991          279 LKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVAR  358 (432)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  358 (432)
                      +|+++++...+...+..........+.|.+..+.     +|+++.+.+.+.....++..+++ ++.+++.||+++|+...
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~g~~~~~~~~~~~~~~-~~~g~l~~~~~~~~~~~  276 (385)
T TIGR00710       203 LKSKMFWGYALIYGASFGGFFAFFSGAPFVYIDI-----MGVSPSVFGLLFALNIIAMIFGG-FLNGRFIKKWGAKSLLR  276 (385)
T ss_pred             HcCchhHHHHHHHHHHHHHHHHHHHcChHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCHHHHHH
Confidence            7778877766666555555555666667666544     68899999999999999888887 58899999999999888


Q ss_pred             HHHHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHHHHh
Q 013991          359 IAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWFVK  428 (432)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~~  428 (432)
                      .+..+..++..++........ ..+........+.+.+.+...+.......+..| ++++++.+.+....
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~  344 (385)
T TIGR00710       277 MGLILFAVSAVLLEITAILGL-GSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLR  344 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHH
Confidence            877766666555543322111 112233334445556666677777777777776 57888888877654

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=100.00  E-value=1.7e-30  Score=252.40  Aligned_cols=357  Identities=13%  Similarity=0.083  Sum_probs=236.1

Q ss_pred             hhHHHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhH-HHHHHhHHHHHHHHhhhhhhhccCChHHHHHHH
Q 013991           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGY-VGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (432)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~-~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~  119 (432)
                      +.+....++.+++.++...+....|.+.++++.+.++.. .....+ ..++..++..++++++|+++||+|||+++.++.
T Consensus        16 ~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~   94 (490)
T PRK10642         16 KAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSV-QMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITI   94 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            445567789999999999999999999999976554310 111111 247788999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhHHH--------HHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHH
Q 013991          120 ASVVIFNTLFGLSVNFWM--------AVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG  190 (432)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~--------l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~  190 (432)
                      ++++++++++++++|+++        ++++|+++|++.|...+. .++++|++|+++|++..++.+.+..+|..+|+.+.
T Consensus        95 ~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~  174 (490)
T PRK10642         95 VIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVV  174 (490)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999875        899999999998887775 99999999999999999999988888888888776


Q ss_pred             hhhcccCCcCCCcccccccccCccchHHHHHHHHHHHHHHHHHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhcc
Q 013991          191 GFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGR  270 (432)
Q Consensus       191 ~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (432)
                      ..+.....+        .....++||.++++.+++.++.++....+||+|++.+.+++.++        ..++.  .+++
T Consensus       175 ~~~~~~~~~--------~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~--------~~~~~--~~~~  236 (490)
T PRK10642        175 VLISTIVGE--------ANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQ--------GDREG--LQDG  236 (490)
T ss_pred             HHHHHhcCH--------HHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhh--------hcccc--cccc
Confidence            655431100        00114567777777766655555555678887664321110000        00000  0001


Q ss_pred             CCCCccccccc-hhHHH-HHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHH
Q 013991          271 EATPKKSLLKN-WPLMS-SIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLE  348 (432)
Q Consensus       271 ~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~  348 (432)
                      ...+.++++++ ++.+. .....++..........+.|.|+.+.     +|++..+.+.......++..++. ++.+++.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-----~g~s~~~~~~~~~~~~~~~~~~~-~~~g~l~  310 (490)
T PRK10642        237 PKVSFKEIATKHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHN-----LHYSEDHGVLIIIAIMIGMLFVQ-PVMGLLS  310 (490)
T ss_pred             ccCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence            12234444442 22222 22223334455566677888887654     57777777777777777777776 5889999


Q ss_pred             HHhChhHHHHHHHHHHHHHHHH-hhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHHH
Q 013991          349 RILGPIMVARIAGVLTIPLLTS-YPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWF  426 (432)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~  426 (432)
                      ||+|||+.+..+.+...+.... +..... ..   ...+.+..++.+++.+...+.......+..|++.||++.+..+.
T Consensus       311 dr~grr~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~  385 (490)
T PRK10642        311 DRFGRRPFVILGSVALFVLAIPAFILINS-NV---IGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFN  385 (490)
T ss_pred             HHhccHHHHHHHHHHHHHHHHHHHHHHhC-CC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHH
Confidence            9999999887776543332222 211111 11   11122233333333344445566677789999999998886443

>PRK12307 putative sialic acid transporter; Provisional

Probab=100.00  E-value=2.8e-30  Score=247.37  Aligned_cols=346  Identities=15%  Similarity=0.197  Sum_probs=242.7

Q ss_pred             CchhHHHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHH
Q 013991           39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (432)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~  118 (432)
                      +++.++..++..+.+.++.....+..|.+.+++|.++.+      .+++.+++.++..+++++.|+++||+|||+++.++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~------~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~   89 (426)
T PRK12307         16 QKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDME------GAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWS   89 (426)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHH
Confidence            345566778888888899988999999999999999999      99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccC
Q 013991          119 TASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (432)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  197 (432)
                      .++.+++.++++++++++.++++|+++|++.+...+. ..++.|++|+|+|+++.++...+.++|.++++.+.+.+.+  
T Consensus        90 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~--  167 (426)
T PRK12307         90 IVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAE--  167 (426)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcc--
Confidence            9999999999999999999999999999998877765 8999999999999999999999999999999999988887  


Q ss_pred             CcCCCcccccccccCccchHHHHHHHHHHHHHHHHHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhccCCCCccc
Q 013991          198 EKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKS  277 (432)
Q Consensus       198 ~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (432)
                           .+|         |+.++.+..+..++.+......||++++.+++.++          ..++.++..+......++
T Consensus       168 -----~~~---------w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~  223 (426)
T PRK12307        168 -----AYG---------WRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLSG----------KGKHSQSAWSVFSLSMKG  223 (426)
T ss_pred             -----cCC---------HHHHHHHHHHHHHHHHHHHHHCCCChHHHHhhhhc----------cccccccchhhhhHHHHH
Confidence                 344         44444554333322222222334433211110000          000000000001123556


Q ss_pred             cccchhHHHHHHHHHH---HHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhChh
Q 013991          278 LLKNWPLMSSIIVYCV---FSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPI  354 (432)
Q Consensus       278 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~  354 (432)
                      .++++.++........   ..........++|.|..+      .|+++.+.+.+.+...++..+++ ++.+++.||+++|
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~g~-~~~g~l~dr~~~~  296 (426)
T PRK12307        224 LFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAG------EGFDTGVVSNLMTAAAFGTVLGN-IVWGLCADRIGLK  296 (426)
T ss_pred             HHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccH
Confidence            7777776554333222   222223355677877765      47888899999999899999988 5889999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHHHH
Q 013991          355 MVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWFV  427 (432)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~  427 (432)
                      +....+.++..+.++.+.......  .  .......+..++...+..+.....+.|.+|++.||++.|..+.+
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~  365 (426)
T PRK12307        297 KTFSIGLLMSFLFIFPLFRIPQDN--Y--LLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNL  365 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcccc--H--HHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHH
Confidence            988887776655544433222111  1  11111111111222233345566778999999999999976543

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.98  E-value=2.7e-30  Score=247.36  Aligned_cols=351  Identities=13%  Similarity=0.102  Sum_probs=240.8

Q ss_pred             hHHHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHH
Q 013991           42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (432)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~  121 (432)
                      .+....+..++..+....+...+|.+.+++|.+..+      .|++.+.+.++..+++++.|+++||+|||+++.++.++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~   97 (434)
T PRK11663         24 ILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSD------IGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIA   97 (434)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHH
Confidence            344556677777777778888999999999999998      99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCcC
Q 013991          122 VVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY  200 (432)
Q Consensus       122 ~~~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~  200 (432)
                      .+++.++++++++++.+++.|++.|++.|...+. .+++.|++|+++|++++++.+.+.++|..++|.+++++.+     
T Consensus        98 ~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~-----  172 (434)
T PRK11663         98 TGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIAL-----  172 (434)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence            9999999999999999999999999987776665 8999999999999999999999999999999999999987     


Q ss_pred             CCcccccccccCccchHHHHHHHHHHHH-HHHHHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhccCCCC-c-cc
Q 013991          201 PNLFSSESLFGKFPYFLPCLCISLFAFG-VTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATP-K-KS  277 (432)
Q Consensus       201 ~~~~gw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~  277 (432)
                                 .++|+..+.+.++..++ .++..+.+||++++....+..+... +. ++..++. +.++.+... . ..
T Consensus       173 -----------~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~-~~~~~~~-~~~~~~~~~~~~~~  238 (434)
T PRK11663        173 -----------HYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRH-DA-LELAQQQ-EGAGLSRKEILTKY  238 (434)
T ss_pred             -----------cccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccc-cc-cccchhc-cccCCChhhhHHHH
Confidence                       34455555666655444 3344456777654321111000000 00 0000000 000000111 1 12


Q ss_pred             cccchhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHh--ChhH
Q 013991          278 LLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL--GPIM  355 (432)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~  355 (432)
                      .++++.++...+..++..........++|.|+.+.     +|++..+++...+...+++.+++ ++.+++.||+  ++|+
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-----~g~s~~~a~~~~~~~~~~~~~g~-~~~g~l~dr~~~~~r~  312 (434)
T PRK11663        239 VLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSET-----LGVDLVTANSAVSMFELGGFIGA-LVAGWGSDKLFNGNRG  312 (434)
T ss_pred             HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cCCCHHHHHHHHHHHHHHHHHHH-HHHhhhHHHhccCCcc
Confidence            56778888777777776777777778889888655     68999999999999999999998 5999999998  3322


Q ss_pred             HH-HHHHHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHHHH
Q 013991          356 VA-RIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWFV  427 (432)
Q Consensus       356 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~  427 (432)
                      .. ........+....+.......   .. ......+..+++.............+..|++.||++.|..+..
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~  381 (434)
T PRK11663        313 PMNLIFAAGILLSVGSLWLMPFAS---YV-MQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLF  381 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHccccc---HH-HHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHH
Confidence            22 221111111111111111111   11 1111222222222222223345667888999999999988754

>PRK10504 putative transporter; Provisional

Probab=99.98  E-value=1.2e-29  Score=245.98  Aligned_cols=357  Identities=14%  Similarity=0.113  Sum_probs=263.0

Q ss_pred             chhHHHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHH
Q 013991           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (432)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~  119 (432)
                      .+.++.++...++..++.....+.+|.+.+++|.+..+      .+++.+.+.++..++.+++|+++||+|||++++.+.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~------~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~   82 (471)
T PRK10504          9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLH------MHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAI   82 (471)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence            34567778888888888889999999999999999998      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCC
Q 013991          120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE  198 (432)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~  198 (432)
                      ++.+++.++++++++++.+++.|+++|++.+...+. .+++.|.+|+++|+++.+..+...++|..+||.+++.+.+   
T Consensus        83 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~---  159 (471)
T PRK10504         83 VLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVE---  159 (471)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh---
Confidence            999999999999999999999999999998888776 8899999999999999999999999999999999999988   


Q ss_pred             cCCCcccccccccCccchHHHHHHHHHHHHHHH-HHhhcccccCCCCCCCcchhhhHH---------Hhhhhh-------
Q 013991          199 KYPNLFSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYD---------ALESAS-------  261 (432)
Q Consensus       199 ~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~---------~~~~~~-------  261 (432)
                          ..||         +..+.+......+..+ .....|+.+... .+.+.......         ..++.+       
T Consensus       160 ----~~gw---------~~~f~~~~~~~~l~~~~~~~~~~~~~~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (471)
T PRK10504        160 ----YASW---------HWIFLINIPVGIIGAIATLMLMPNYTMQT-RRFDLSGFLLLAVGMATLTLALDGSKGLGLSPL  225 (471)
T ss_pred             ----hccH---------HHHHHHHHHHHHHHHHHHHHhCCCccccC-CCCChHHHHHHHHHHHHHHHHHhcCCcCCcchH
Confidence                3444         4444555544444333 333444433221 11111100000         000000       


Q ss_pred             ---------------hhhhhhhccCCCCccccccchhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhh
Q 013991          262 ---------------AEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVG  326 (432)
Q Consensus       262 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g  326 (432)
                                     ...++.+.+++....+++||++++......++..........+.|.|.+..     +|.++.+.+
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~g  300 (471)
T PRK10504        226 AIAGLVAVGVVALLLYLLHARNNNRALFSLKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIG-----LGFSPFHAG  300 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCHHHHH
Confidence                           000111222233344678999988887777777766666667788887754     688999999


Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHhChhHHHHHHHHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 013991          327 EVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFI  406 (432)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (432)
                      +......++..++. ++.+++.||+++|+.+..+..+..+...++.+.....  ..+ ......++.+++.+...+..+.
T Consensus       301 ~~~~~~~~~~~~~~-~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~g~~~~~~~~~~~~  376 (471)
T PRK10504        301 LMMIPMVLGSMGMK-RIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLG--WYY-LLPFVLFLQGMVNSTRFSSMNT  376 (471)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccc--cHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence            99888888877776 5889999999999999888877766655554432111  111 1222334445566667778888


Q ss_pred             HHhccccccchhhhhhHHHHHh
Q 013991          407 LQNRAVVRVLTYTLSCHFWFVK  428 (432)
Q Consensus       407 ~~~~~~p~~~~g~~~~~~~~~~  428 (432)
                      ...+.+|++.+|++++.+.+.+
T Consensus       377 ~~~~~~~~~~~g~~~~~~~~~~  398 (471)
T PRK10504        377 LTLKDLPDNLASSGNSLLSMIM  398 (471)
T ss_pred             HHHHcCCHHhccchHHHHHHHH
Confidence            8889999999999999887764

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.98  E-value=1.9e-29  Score=238.18  Aligned_cols=322  Identities=16%  Similarity=0.147  Sum_probs=230.7

Q ss_pred             CchhHHHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHH
Q 013991           39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (432)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~  118 (432)
                      .|+.+..+....+..........+.+|.+.+++|.++++      .++..+++.++..+++++.|+++||+|||+++..+
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~   91 (394)
T PRK10213         18 NWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGV------AGQSVTVTAFVAMFASLFITQTIQATDRRYVVILF   91 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHH
Confidence            455555555554445555556667789999999999999      99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccC
Q 013991          119 TASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (432)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  197 (432)
                      .++.+++.++++++++++.+++.|+++|++.+...+. .+++.|++|+++|++++++...+.++|..+||.+++.+.+  
T Consensus        92 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~--  169 (394)
T PRK10213         92 AVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGE--  169 (394)
T ss_pred             HHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence            9999999999999999999999999999998888776 8899999999999999999999999999999999999988  


Q ss_pred             CcCCCcccccccccCccchHHHHHHHHHHHHHHHH-HhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhccCCCCcc
Q 013991          198 EKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKK  276 (432)
Q Consensus       198 ~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (432)
                           .+||         +..+.+.+++.++..+. ....||+++++++     +                    ....+
T Consensus       170 -----~~gw---------~~~f~~~~~l~~~~~l~~~~~~p~~~~~~~~-----~--------------------~~~~~  210 (394)
T PRK10213        170 -----LIGW---------RNVFNAAAVMGVLCIFWIIKSLPSLPGEPSH-----Q--------------------KQNTF  210 (394)
T ss_pred             -----hcCH---------HHHHHHHHHHHHHHHHHHHHHCCCCCccccc-----c--------------------hhHHH
Confidence                 4444         44446655554443332 3345664321100     0                    01234


Q ss_pred             ccccchhHHHHHHHHHHHHHHhhhHHHHH-HhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhChhH
Q 013991          277 SLLKNWPLMSSIIVYCVFSLHDMAYSEIF-SLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIM  355 (432)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  355 (432)
                      +.+|+|.++...+..++..........++ |.|..+      +|+++.+.+......+++..+++ .+.+++.||.++ +
T Consensus       211 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~------~g~s~~~~g~~~~~~~~~~iig~-~~~~~l~~r~~~-~  282 (394)
T PRK10213        211 RLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNL------AGFGVDGLTLVLLSFGIASFVGT-SLSSFILKRSVK-L  282 (394)
T ss_pred             HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCCChhHHHHHHHHHHHHHHHHH-HHHHHHHhccch-h
Confidence            56778888776665555554444555555 555433      58899999999999999999998 588999998544 4


Q ss_pred             HHHHHHHH-HHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhh
Q 013991          356 VARIAGVL-TIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSC  422 (432)
Q Consensus       356 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~  422 (432)
                      .+..+..+ ....+++......     .+ .+....++.+++.....+...+.+.+..|++ ++++.+
T Consensus       283 ~l~~~~~~~~~~~~~l~~~~~~-----~~-~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~  343 (394)
T PRK10213        283 ALAGAPLVLAVSALVLTLWGSD-----KI-VATGVAIIWGLTFALVPVGWSTWITRSLADQ-AEKAGS  343 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhh-----HH-HHHHHHHHHHHHHHhhhHHHHHHHHHHCccc-HHHHHH
Confidence            33333333 2222333222211     11 2333455556666777777887888888744 444444

>PRK10133 L-fucose transporter; Provisional

Probab=99.98  E-value=1.1e-29  Score=242.38  Aligned_cols=345  Identities=14%  Similarity=0.112  Sum_probs=251.8

Q ss_pred             chhHHHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHH
Q 013991           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (432)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~  119 (432)
                      ...+..+.+..++..+......+..|.+++++|.++.+      .|+..+.+.+++.+++++.|+++||+|||+++.++.
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~------~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~   98 (438)
T PRK10133         25 IIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQ------AGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGL   98 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence            34556667777888888888999999999999999999      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH---hhhhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcc
Q 013991          120 ASVVIFNTLF---GLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (432)
Q Consensus       120 ~~~~~~~~~~---~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (432)
                      +++.++++++   ..+++++.++++|+++|++.|...+. .+++.|+.|+++|.+.++..+....+|..+||.+++.+..
T Consensus        99 ~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~  178 (438)
T PRK10133         99 FLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLIL  178 (438)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999876   46789999999999999998888775 8889998777777778999999999999999999887652


Q ss_pred             cCCcC-----------CCcccccccccCccchHHHHHHHHHH-HHHHHH-HhhcccccCCCCCCCcchhhhHHHhhhhhh
Q 013991          196 PAEKY-----------PNLFSSESLFGKFPYFLPCLCISLFA-FGVTIA-AFWLPETLHRHNDDDDSCDVSYDALESASA  262 (432)
Q Consensus       196 ~~~~~-----------~~~~gw~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~  262 (432)
                      ...+.           ....+||..+ ..+|+.++....... ++.++. ...+||.++++   +++.+           
T Consensus       179 ~~~~~~~~~~~~~l~~~~~~~w~~~~-~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~~---~~~~~-----------  243 (438)
T PRK10133        179 SNVPHQSQDVLDKMTPEQLSAYKHSL-VLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN---HSDAK-----------  243 (438)
T ss_pred             cCCcccchhhhhccChhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc---ccccc-----------
Confidence            11000           0012566554 456888776433322 222222 23344422110   00000           


Q ss_pred             hhhhhhccCCCCccccccchhHHHHHHHHHHHHHHhhhHHHHHHhhh-cCCCcCCCcccccchhhHHHHHHHHHHHHHHH
Q 013991          263 EVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWA-NSPKKLGGLNYSTQMVGEVLAITGFSLLVFQL  341 (432)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~  341 (432)
                           +.+.....++++++|.++...+..++......+...+.+.|+ ++.     +|+++.+++..+....++..+++ 
T Consensus       244 -----~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~-----~g~s~~~ag~~~~~~~~~~~vG~-  312 (438)
T PRK10133        244 -----QGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEI-----PGMTAGFAANYLTGTMVCFFIGR-  312 (438)
T ss_pred             -----ccchhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-----CCCCHHHHHHHHHHHHHHHHHHH-
Confidence                 000112345678888887766666666666666666777774 333     69999999999999999999998 


Q ss_pred             HhHHHHHHHhChhHHHHHHHHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhh
Q 013991          342 SLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLS  421 (432)
Q Consensus       342 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~  421 (432)
                      ++++++.||+++++++..+..+..+.+.+..+...   .    .......+.+++.+..+|..++...+..|++ .+++.
T Consensus       313 ~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~---~----~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~-~~~as  384 (438)
T PRK10133        313 FTGTWLISRFAPHKVLAAYALIAMALCLISAFAGG---H----VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGS  384 (438)
T ss_pred             HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCC---h----HHHHHHHHHHHHHHHHHHHHHHHHHcccchh-hccch
Confidence            59999999999999988887666555544333221   1    1123445567788899999999999988764 45555


Q ss_pred             hHH
Q 013991          422 CHF  424 (432)
Q Consensus       422 ~~~  424 (432)
                      ++.
T Consensus       385 ~l~  387 (438)
T PRK10133        385 SFI  387 (438)
T ss_pred             hHH
Confidence            544

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.98  E-value=1.2e-30  Score=245.81  Aligned_cols=347  Identities=14%  Similarity=0.098  Sum_probs=243.1

Q ss_pred             HHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHH
Q 013991           49 IVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTL  128 (432)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~  128 (432)
                      ..+.............|.+.+++|.+..+      .+++.+++.++..+++++.|+++||+|||+++.++.++..++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~   76 (379)
T TIGR00881         3 GYAAYYLVRKNFALAMPYLVEEIGLSKTD------LGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLF   76 (379)
T ss_pred             hhhHHHHhHHhhhhhhHHHHHHhCCCHhH------HHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHH
Confidence            34566677778888899999999999999      999999999999999999999999999999999999999999999


Q ss_pred             HhhhhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHH-HHHhhhcccCCcCCCcccc
Q 013991          129 FGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGP-ALGGFLAQPAEKYPNLFSS  206 (432)
Q Consensus       129 ~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~-~~~~~l~~~~~~~~~~~gw  206 (432)
                      ++++++++.+++.|++.|++.+...+. .+++.|++|+++|++++++.+.+..+|..++| .+++.+.+           
T Consensus        77 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----------  145 (379)
T TIGR00881        77 FGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAE-----------  145 (379)
T ss_pred             HHHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHh-----------
Confidence            999999999999999999998887775 89999999999999999999999999999999 56666665           


Q ss_pred             cccccCccchHHHHHHHHHHHH-HHHHHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhccCCCCccccccchhHH
Q 013991          207 ESLFGKFPYFLPCLCISLFAFG-VTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLM  285 (432)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (432)
                           ..+|+..+.+.+++.++ .++..++.||+++..+.++++++.. ++.++.+++.+++.+..+...+..++++.++
T Consensus       146 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (379)
T TIGR00881       146 -----LYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMPN-EEPDGDAEKKEEELTKKQIFLQYVLLNKVLW  219 (379)
T ss_pred             -----cCCchhHHHHHHHHHHHHHHHHheeeCCCccccccCccccCcc-cccccccccccccccchHHHHHHHHhcchHH
Confidence                 33444444665555444 3444555666554322111111100 0000000000001111122345677888888


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhCh-hHHHHH-HH-H
Q 013991          286 SSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGP-IMVARI-AG-V  362 (432)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~-~~-~  362 (432)
                      ...+..++..........+.|.|..+.     +|+++.+.+.......++..++. ++.+++.||..+ ++.... .. .
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~-~~~g~l~~r~~~~~~~~~~~~~~~  293 (379)
T TIGR00881       220 YISLGYVFVYVVRTGILDWSPLYLTQE-----KGFSKEKASWAFTLYELGGLVGT-LLAGWLSDKLFNGRRGPLAVFFMA  293 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCHHHHHHHHHHHHHHcchhH-HHHHHHHHHHcCCcchHHHHHHHH
Confidence            887777777777778888889888765     68899999999999999999988 588999998633 322221 11 1


Q ss_pred             HHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHHHHh
Q 013991          363 LTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWFVK  428 (432)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~~  428 (432)
                      ...+.+........ .  . ........+..+.......+.......+..|++.||++.|.+....
T Consensus       294 ~~~~~~~~~~~~~~-~--~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~  355 (379)
T TIGR00881       294 LIIVSLLVYWLNPA-A--N-PLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFA  355 (379)
T ss_pred             HHHHHHHHHhcCcc-h--h-HHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhh
Confidence            11111111111001 1  1 1122233333444444555566778899999999999999987654

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.98  E-value=4.7e-30  Score=241.72  Aligned_cols=324  Identities=13%  Similarity=0.081  Sum_probs=235.7

Q ss_pred             hhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHhhh
Q 013991           53 TALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS  132 (432)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~  132 (432)
                      .........+..|.+.+++|.++.+      .+++.+++.++..+++++.|+++||+|||+++.++.++.+++.++++++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~s~~~------~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~   88 (377)
T TIGR00890        15 TSGYVYTWTLLAPPLGRYFGVGVTA------VAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIA   88 (377)
T ss_pred             HhhHHhhhhhHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHH
Confidence            3333556788899999999999999      9999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCcCCCccccccccc
Q 013991          133 VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFG  211 (432)
Q Consensus       133 ~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~  211 (432)
                      ++++.++++|++.|++.+...+. ...+.|++| |+|+++.++...+.++|..+++.+.+.+.+                
T Consensus        89 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----------------  151 (377)
T TIGR00890        89 DSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVIN----------------  151 (377)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHh----------------
Confidence            99999999999999998876554 777888886 679999999999999998877666666665                


Q ss_pred             CccchHHHHHHHHHHHHHHHH-HhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhccCCCCccccccchhHHHHHHH
Q 013991          212 KFPYFLPCLCISLFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIV  290 (432)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (432)
                      .++|+..+.+.++..++..+. .++++|+++++.+++++.+                  +.....++.+|++.++...+.
T Consensus       152 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~  213 (377)
T TIGR00890       152 LEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQLIKTNIEVS------------------VKDYTVWEMLRTPQFWVLYLS  213 (377)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHheecCchhccccCcccc------------------hhhhhHHHHHcCccHHHHHHH
Confidence            334555557766666554433 3445543322111110000                  001123456777777766665


Q ss_pred             HHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhChhHHHHHHHHHHHHHHHH
Q 013991          291 YCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTS  370 (432)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  370 (432)
                      .+...........+.+.|.++      +|.+..+.+...+..++...+++ ++.+++.||++||+.+..+..+..++.+.
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-~~~g~l~dr~g~~~~~~~~~~~~~~~~~~  286 (377)
T TIGR00890       214 FFLNAVSGLLLIGLYKPYGQS------LGLSDGFLVLAVSISSIFNGGGR-PFLGALSDKIGRQKTMSIVFGISAVGMAA  286 (377)
T ss_pred             HHHHhHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence            555555544455555555433      57788888999999999999988 58899999999999988887777776665


Q ss_pred             hhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHHHHh
Q 013991          371 YPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWFVK  428 (432)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~~  428 (432)
                      +.......   . ........+.++..+...+....+..|..|+++|+++.|.++...
T Consensus       287 ~~~~~~~~---~-~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  340 (377)
T TIGR00890       287 MLFIPMLN---D-VLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAK  340 (377)
T ss_pred             HHHcccch---h-HHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHH
Confidence            54433221   1 112222233344455555666778899999999999999887653

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.97  E-value=2.7e-29  Score=237.01  Aligned_cols=335  Identities=12%  Similarity=0.065  Sum_probs=237.3

Q ss_pred             hHHHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHH
Q 013991           42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (432)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~  121 (432)
                      .+..++...++..++........+.+.++++.+..+      .+++.+.+.+++.+..++.|+++||+|||++++++.++
T Consensus         4 ~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~   77 (393)
T PRK11195          4 GFYAIMAAQFFSALADNALLFAAIALLKELHYPDWS------QPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGI   77 (393)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH------HHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHH
Confidence            455677788888887666667677778999999888      99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCcC
Q 013991          122 VVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY  200 (432)
Q Consensus       122 ~~~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~  200 (432)
                      .++++++++++.+.   ++.|+++|++.+...|+ .+++.|++|+++|++++++.+....+|.++||.++|++.+     
T Consensus        78 ~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~-----  149 (393)
T PRK11195         78 KLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALAD-----  149 (393)
T ss_pred             HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence            99988888777664   78899999999999887 9999999999999999999999999999999999999986     


Q ss_pred             CCcccccccccCccchHHHHHHHHHHHHHHHHHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhccCCCCcccccc
Q 013991          201 PNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLK  280 (432)
Q Consensus       201 ~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (432)
                                 . .|+.++.+.+...++..+..+.+||++++++.++.+.....++..              ...+.+++
T Consensus       150 -----------~-~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~l~~  203 (393)
T PRK11195        150 -----------P-HAEAALAVCALIYLLAALFNLFIPRLGARRPGQSWNPIALLRDFF--------------HACRVLWR  203 (393)
T ss_pred             -----------H-HHHHHHHHHHHHHHHHHHHHhcCCCCcccccccCCCHHHHHHHHH--------------HHHHHHHh
Confidence                       1 144444544444444444556778765432221111110000000              01235567


Q ss_pred             chhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhChhHHHHHH
Q 013991          281 NWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIA  360 (432)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  360 (432)
                      +|.++.......+...........++.|.++.     +|.++.+.|.+....+++.++++ +..+++.||.++++....+
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----lg~s~~~~G~~~~~~~~g~i~g~-~~~~~l~~~~~~~~~~~~g  277 (393)
T PRK11195        204 DKLGRFSLAGTTLFWGAGATLRFLVLAWAPVA-----LGITLNQPAYLQAVVAIGIAVGA-GAAARLVTLETVLRVLPAG  277 (393)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCChhHHHHHHHHHHHHHHHHH-HHHHHHhcCCcccchHHHH
Confidence            77666554444444444445555666666655     68899999999999999999998 5778888888877776666


Q ss_pred             HHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccc-hhhhhhHHHHHhh
Q 013991          361 GVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVL-TYTLSCHFWFVKL  429 (432)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~g~~~~~~~~~~~  429 (432)
                      ... .+....++....     . .......++.+++.+...+..++...+..|++. +|++.+..+..+.
T Consensus       278 ~~~-~~~~~~~~~~~~-----~-~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~  340 (393)
T PRK11195        278 ILM-GLVVLLMALQHS-----L-LPAYPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNEN  340 (393)
T ss_pred             HHH-HHHHHHHHHHhH-----H-HHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHH
Confidence            432 332222222111     1 122333444555556656667777777766654 7888888877654

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.97  E-value=3.6e-29  Score=238.07  Aligned_cols=335  Identities=17%  Similarity=0.115  Sum_probs=247.9

Q ss_pred             HHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHH
Q 013991           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (432)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~  124 (432)
                      .+.+..++..++...+.+.+|.+.+++|.++.+      .++..+.+.++..+++++.|+++||+|||+++.++..+..+
T Consensus        17 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~   90 (406)
T PRK15402         17 CLVLFEFATYIANDMIQPGMLAVVEDFNAGAEW------VPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFIL   90 (406)
T ss_pred             HHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence            455666677778888889999999999999998      99999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCcCCCc
Q 013991          125 FNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNL  203 (432)
Q Consensus       125 ~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~  203 (432)
                      +.+++..+++++.+++.|+++|++.+...+. .+++.|.+|+++|.+.+++......+|..+||.+++.+.+       .
T Consensus        91 ~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~-------~  163 (406)
T PRK15402         91 TCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIH-------V  163 (406)
T ss_pred             HHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------c
Confidence            9999999999999999999999998877665 8899999999999999999988888999999999999887       3


Q ss_pred             ccccccccCccchHHHHHHHHHHHHHHH-HHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhccCCCCccccccch
Q 013991          204 FSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNW  282 (432)
Q Consensus       204 ~gw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (432)
                      .||         +..+.+.++..++..+ ..+..||++++.+++.+.     ++              .....+.++++|
T Consensus       164 ~~w---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~--------------~~~~~~~~~~~~  215 (406)
T PRK15402        164 LPW---------RGMFVLFAALAALSFFGLWRAMPETAGRVGEKLSL-----KE--------------LGRDYKLVLKNR  215 (406)
T ss_pred             cCc---------cHHHHHHHHHHHHHHHHHHHhCCCCCccccccccH-----HH--------------HHHHHHHHHcCc
Confidence            444         4444665555554433 334566654322111000     00              011235677888


Q ss_pred             hHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhChhHHHHHHHH
Q 013991          283 PLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGV  362 (432)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  362 (432)
                      .++...+..++.......+....|.++.+.     +|+++.+.+.......++..++. ++.+++.||+++++....+.+
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-----~g~~~~~~g~~~~~~~~~~~~g~-~~~g~l~~r~~~~~~~~~~~~  289 (406)
T PRK15402        216 RFVAGALALGLVSLPLLAWIALSPVILISG-----EQLSSYEYGLLQVPVFGALIAGN-LTLARLTSRRPLRSLIRMGLW  289 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCHHHHHHHHHH
Confidence            888777666666555556666677776554     68888888888777777777777 588999999999999888877


Q ss_pred             HHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHHHHh
Q 013991          363 LTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWFVK  428 (432)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~~  428 (432)
                      +..++...+......... .+........+.+++.+...+..+..... .+++++|++++.+...+
T Consensus       290 ~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~g~g~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~  353 (406)
T PRK15402        290 PMVAGLLLAALATVISSH-AYLWLTAGLSLYAFGIGLANAGLYRLTLF-SSDVSKGTVSAAMGMLS  353 (406)
T ss_pred             HHHHHHHHHHHHHHcccc-cHHHHHHHHHHHHHHHHHHhhhHHHHHhh-hccccccHHHHHHHHHH
Confidence            776666665544321111 11223344445555555555555555443 44588999999887765

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.97  E-value=4.9e-29  Score=235.53  Aligned_cols=310  Identities=12%  Similarity=0.041  Sum_probs=228.4

Q ss_pred             cchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHhhhhhHHH
Q 013991           58 SSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWM  137 (432)
Q Consensus        58 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~  137 (432)
                      ....+.+|.+.+|+|.|.++      .+++.+.+.+++.+++++.|+++||+|||+++..+..+++++.+.++++++++.
T Consensus        26 ~~~~~~lp~i~~~~~~s~~~------~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~   99 (393)
T PRK09705         26 TSVGPLLPQLRQASGMSFSV------AALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSAL   99 (393)
T ss_pred             hccchhHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHH
Confidence            66779999999999999999      999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCcCCCcccccccccCccch
Q 013991          138 AVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYF  216 (432)
Q Consensus       138 l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~  216 (432)
                      ++++|+++|++.+...+. ..++.|++| ++|+++++....+..+|..+|+.+++++.+.      ..+||.        
T Consensus       100 ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~------~~~w~~--------  164 (393)
T PRK09705        100 LLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQH------SETWYQ--------  164 (393)
T ss_pred             HHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHh------cCCHHH--------
Confidence            999999999998887775 888899886 7899999999999999999999999998861      124443        


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhccCCCCccccccchhHHHHHHHHHHHHH
Q 013991          217 LPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSL  296 (432)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (432)
                       .+...++..++.++..+...+..++.+++                        ++...++.+++++.+...+.+.+...
T Consensus       165 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~l~~~~~~~l~~~~~~~~~  219 (393)
T PRK09705        165 -TLAWWALPAVVALFAWWWQSAREVASSHK------------------------TTTTPVRVVFTPRAWTLGVYFGLING  219 (393)
T ss_pred             -HHHHHHHHHHHHHHHHHHHhcCCCccccC------------------------CCcCCcccccCHhHHHHHHHHHHHHH
Confidence             33333333333222222222111110000                        00112345567777776666666666


Q ss_pred             HhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhChhHHHHHHHHHHHHHHHHhhHHHh
Q 013991          297 HDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAM  376 (432)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (432)
                      .......+.|.|+.+      +|++..++|...+..+++.++++ ++.+++.||.++++....+..+..++...+.....
T Consensus       220 ~~~~~~~~lp~~l~~------~g~s~~~ag~~~~~~~i~~i~g~-~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~  292 (393)
T PRK09705        220 GYASLIAWLPAFYIE------IGASAQYSGSLLALMTLGQAAGA-LLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPL  292 (393)
T ss_pred             HHHHHHHHHHHHHHH------cCCChhhhhHHHHHHHHHHHHHH-HHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccc
Confidence            777777888888764      48899999999999999999998 58899999999999888877666666554432221


Q ss_pred             hhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccc-cccchhhhhhHHHHH
Q 013991          377 LSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAV-VRVLTYTLSCHFWFV  427 (432)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~g~~~~~~~~~  427 (432)
                      ..   ..  ..  ..+.+++.+...|.......+.. |++++|++++..+..
T Consensus       293 ~~---~~--~~--~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~  337 (393)
T PRK09705        293 QL---PV--LW--AMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGI  337 (393)
T ss_pred             hH---HH--HH--HHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence            11   11  11  12233444555666665555655 467889888876654

>PRK09952 shikimate transporter; Provisional

Probab=99.97  E-value=4.8e-29  Score=238.75  Aligned_cols=352  Identities=14%  Similarity=0.106  Sum_probs=230.5

Q ss_pred             hhHHHHHHHHHHhhccccchhhhHHH-HHHHh--cCCccccchhhhh-hHHHHHHhHHHHHHHHhhhhhhhccCChHHHH
Q 013991           41 TELFSIWIIVLCTALPISSLFPFLYF-MIKDF--QIAKREEDIGSYA-GYVGSSFMFGRALTSVFWGLVADRYGRKPVII  116 (432)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~s~~~~~~~~~~-~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~  116 (432)
                      +.+....+..+++.++...+....|. +.+++  +.++.+   +... ....++..++..+++++.|+++||+|||+++.
T Consensus        22 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~   98 (438)
T PRK09952         22 RAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM---GTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLM   98 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH---HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHH
Confidence            44556777888899999888887774 45555  455432   1111 11223456778899999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhHH--------HHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHH
Q 013991          117 MGTASVVIFNTLFGLSVNFW--------MAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGP  187 (432)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~--------~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~  187 (432)
                      .+.+++++++++++++++++        .++++|+++|++.|...+. ..++.|++|+++|++..+..+.+..+|..+++
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~  178 (438)
T PRK09952         99 LTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLST  178 (438)
T ss_pred             HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999987        5889999999998887775 89999999999999999999999999999988


Q ss_pred             HHHhhhcccCCcCCCcccccccccCccchHHHHHHHHHHHHHHHHHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhh
Q 013991          188 ALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEE  267 (432)
Q Consensus       188 ~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (432)
                      .+...+.....+        ..+..++||.++++.++..++.+......||++++.+.+.+.++                
T Consensus       179 ~~~~~l~~~~~~--------~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~----------------  234 (438)
T PRK09952        179 GLVSLISMMTTD--------EQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAA----------------  234 (438)
T ss_pred             HHHHHHHHhCCH--------HHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhccc----------------
Confidence            877766531110        01114567777787776655444444456666543211100000                


Q ss_pred             hccCCCCccccccchhHHHHHH-HHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHH
Q 013991          268 EGREATPKKSLLKNWPLMSSII-VYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPF  346 (432)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~  346 (432)
                      .+++....+.++++++.+.... ..++..........+.|.|.++.     +|++...........++...++. ++.++
T Consensus       235 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~-----~g~s~~~~~~~~~~~g~~~~i~~-~~~g~  308 (438)
T PRK09952        235 AKKRIPVIEALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQN-----LGLPRELFLNIGLLVGGLSCLTI-PCFAW  308 (438)
T ss_pred             ccccCCHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence            0000011223455665555433 33333444555666777777654     57777655555555566666666 58899


Q ss_pred             HHHHhChhHHHHHHHHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHHH
Q 013991          347 LERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWF  426 (432)
Q Consensus       347 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~  426 (432)
                      ++||++||+....+.++..+....+.......+  ....+.+..++.+++.+...+..+++..|.+|++.|+++.+..+.
T Consensus       309 l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~  386 (438)
T PRK09952        309 LADRFGRRRVYITGALIGTLSAFPFFMALEAQS--IFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQ  386 (438)
T ss_pred             HHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHH
Confidence            999999999888776655443332222111111  111222233344455555667788899999999999988887654


Q ss_pred             H
Q 013991          427 V  427 (432)
Q Consensus       427 ~  427 (432)
                      +
T Consensus       387 ~  387 (438)
T PRK09952        387 V  387 (438)
T ss_pred             H
Confidence            3

>PRK15075 citrate-proton symporter; Provisional

Probab=99.97  E-value=6.3e-29  Score=238.04  Aligned_cols=344  Identities=15%  Similarity=0.099  Sum_probs=225.2

Q ss_pred             chhHHHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHH-HH-----HhHHHHHHHHhhhhhhhccCChH
Q 013991           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVG-SS-----FMFGRALTSVFWGLVADRYGRKP  113 (432)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~-s~-----~~~~~~~~~~~~G~l~dr~Grr~  113 (432)
                      ++.....++..+++.++...+....|.+.++++.++.+      .+... +.     ..++..+++++.|+++||+|||+
T Consensus        14 ~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~   87 (434)
T PRK15075         14 ARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNE------FASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRK   87 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCc------hHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHH
Confidence            34566788899999999999999999999999998876      44332 22     23333578899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHH--------HHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHH
Q 013991          114 VIIMGTASVVIFNTLFGLSVNFW--------MAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLI  184 (432)
Q Consensus       114 ~l~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~  184 (432)
                      +++.+.++..+++++++++++++        .++++|+++|++.+...+. ..+++|++|+++|++.+++.+...++|..
T Consensus        88 ~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~  167 (434)
T PRK15075         88 GLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVV  167 (434)
T ss_pred             HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHH
Confidence            99999999999999999999877        4689999999998887765 89999999999999999999999989988


Q ss_pred             HHHHHHhhhcccCCcCCCcccccccccCccchHHHHHHHHHHHHHHHHHhhcccccCCCCCCCcchhhhHHHhhhhhhhh
Q 013991          185 IGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEV  264 (432)
Q Consensus       185 ~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (432)
                      +++.+++.+.....+.       .. ..++||.++++.++...+........||+++..+++                  
T Consensus       168 ~g~~~g~~l~~~~~~~-------~~-~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~------------------  221 (434)
T PRK15075        168 FAALLGYLLNQWLSPA-------QM-AEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARK------------------  221 (434)
T ss_pred             HHHHHHHHHHHhCCHH-------HH-hccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhh------------------
Confidence            8888888775311100       00 034566666654433222222112222221100000                  


Q ss_pred             hhhhccCCCCccccccchhHHHH-HHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHh
Q 013991          265 KEEEGREATPKKSLLKNWPLMSS-IIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSL  343 (432)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~  343 (432)
                        .+.+.....+...++++.+.. ....+...........+.|.|+++.     +|++..+.+....+..++.+++. ++
T Consensus       222 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-----~g~~~~~~~~~~~~~~~~~~~~~-~~  293 (434)
T PRK15075        222 --HRPSMREIFRSLAANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTV-----LHLSAADSLLVTLCVGVSNFIWL-PI  293 (434)
T ss_pred             --hccccccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHH-HH
Confidence              000001112223344443332 2223333344555667788888765     68888888888888888888887 58


Q ss_pred             HHHHHHHhChhHHHHHHHHHHHHHHH-HhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhh
Q 013991          344 YPFLERILGPIMVARIAGVLTIPLLT-SYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSC  422 (432)
Q Consensus       344 ~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~  422 (432)
                      .+++.||+++|+....+.....+... .+.......  ... .......+.+++.+...+....+..|..|++.|+++.+
T Consensus       294 ~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g  370 (434)
T PRK15075        294 GGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAP--SFA-RMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFS  370 (434)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCC--chH-HHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchhee
Confidence            89999999999987766544332211 111111111  111 11111222233444455556678899999999999888


Q ss_pred             HHHH
Q 013991          423 HFWF  426 (432)
Q Consensus       423 ~~~~  426 (432)
                      +.+.
T Consensus       371 ~~~~  374 (434)
T PRK15075        371 LAYS  374 (434)
T ss_pred             HHHH
Confidence            7543

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.97  E-value=8.6e-29  Score=240.80  Aligned_cols=364  Identities=13%  Similarity=0.025  Sum_probs=236.6

Q ss_pred             chhHHHHHHHHHHhhccccchhhhHHHHHHHh--------cCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCC
Q 013991           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDF--------QIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGR  111 (432)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Gr  111 (432)
                      .+..+...+..+..+++...+.+..|.+.+++        +.+..+      .+++.+++.++..++++++|+++||+||
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~s~~~ig~~~~~~~~G~l~dr~Gr   84 (479)
T PRK10077         11 FSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSL------LGFCVASALIGCIIGGALGGYCSNRFGR   84 (479)
T ss_pred             HHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhH------HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            34455666778888999999999999998887        667777      9999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHhhh------------hhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHH
Q 013991          112 KPVIIMGTASVVIFNTLFGLS------------VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTA  178 (432)
Q Consensus       112 r~~l~~~~~~~~~~~~~~~~~------------~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~  178 (432)
                      |++++++.+++.++.++++++            +.++.++++|+++|++.|...+. .++++|++|+++|++++++.+.+
T Consensus        85 r~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~  164 (479)
T PRK10077         85 RDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFA  164 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHH
Confidence            999999999999988887763            23567889999999998888775 99999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhcccCCcCCCcccccccccCccchHHHHHHHHHHHHHHHHHhhcccccCCCCCCCcchhhh--HHH
Q 013991          179 WGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVS--YDA  256 (432)
Q Consensus       179 ~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~--~~~  256 (432)
                      ..+|.++++.+++.+.....+.        ....++||.++.+.++..++..+..+++||++++...++++++..  .++
T Consensus       165 ~~~G~~~~~~~~~~~~~~~~~~--------~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~  236 (479)
T PRK10077        165 IIFGQLVVYFVNYFIARSGDAS--------WLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRK  236 (479)
T ss_pred             HHHHHHHHHHHHHHHhccCccc--------ccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHH
Confidence            9999999998887765421100        001446677777777776666666677899876532222111111  000


Q ss_pred             hhhhhh------hhhhhhccCCCCccccccchhHHHHHHHHHHHHHH----hhhHHHHHHhhhcCCCcCCCcccccchhh
Q 013991          257 LESASA------EVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLH----DMAYSEIFSLWANSPKKLGGLNYSTQMVG  326 (432)
Q Consensus       257 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~s~~~~g  326 (432)
                      .....+      +..+..+++....+..+... ............+.    ......+.|.+..+      .|++....+
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~------~g~~~~~~~  309 (479)
T PRK10077        237 IMGNTLATQALQEIKHSLDHGRKTGGKLLMFG-VGVIVIGVMLSVFQQFVGINVVLYYAPEIFKT------LGASTDIAL  309 (479)
T ss_pred             HcCChhHHHHHHHHHHHHHHhhhhhhhhcchh-HHHHHHHHHHHHHHHHhChhHHHHHHHHHHHH------cCCCCchHH
Confidence            000000      00000000000001111100 01111111111111    11112233444332      577777677


Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHhChhHHHHHHHHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHh-hhhhHHHHHH
Q 013991          327 EVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNL-LSVSIITGLF  405 (432)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  405 (432)
                      ......++..+++. ++.+++.||+++|+++..+..+..++.+.+...........+  ......+.+. ......|..+
T Consensus       310 ~~~~~~~~~~~i~~-~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  386 (479)
T PRK10077        310 LQTIIVGVINLTFT-VLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIV--ALLSMLFYVAAFAMSWGPVCW  386 (479)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHH--HHHHHHHHHHHHhccccchhH
Confidence            77777788888887 688999999999999999888888777666543322211111  1111222222 2222347788


Q ss_pred             HHHhccccccchhhhhhHHHHH
Q 013991          406 ILQNRAVVRVLTYTLSCHFWFV  427 (432)
Q Consensus       406 ~~~~~~~p~~~~g~~~~~~~~~  427 (432)
                      .+++|..|+++|+++.|.....
T Consensus       387 ~~~~e~~p~~~r~~~~g~~~~~  408 (479)
T PRK10077        387 VLLSEIFPNAIRGKALAIAVAA  408 (479)
T ss_pred             HHhHhhCChhHHHHHHHHHHHH
Confidence            9999999999999999976543

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.97  E-value=1.4e-28  Score=233.62  Aligned_cols=335  Identities=14%  Similarity=0.121  Sum_probs=237.3

Q ss_pred             HHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHH
Q 013991           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (432)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~  124 (432)
                      .+.+..+...+......|.+|.+.++++.+..+      .++..+++.+++.++++++|+++||+|||++++.+.+++++
T Consensus        20 ~~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~------~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~   93 (413)
T PRK15403         20 ALILYDFAAYLTTDLIQPGIINVVRDFNADVSL------APASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTL   93 (413)
T ss_pred             HHHHHHHHHHHHHHhhccCHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHH
Confidence            344556667778889999999999999999999      99999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCcCCCc
Q 013991          125 FNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNL  203 (432)
Q Consensus       125 ~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~  203 (432)
                      +.++++++++++.++++|+++|++.+...+. ..++.|.+|+++|++++++.+....+|..+||.+++.+.+        
T Consensus        94 ~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~--------  165 (413)
T PRK15403         94 ACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMH--------  165 (413)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence            9999999999999999999999987765555 7889999999999999999999999999999999999987        


Q ss_pred             ccccccccCccchHHHHHHHHHHHHHHHH-HhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhccCCCCccccccch
Q 013991          204 FSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNW  282 (432)
Q Consensus       204 ~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (432)
                              .++|+..+++.++..++..+. .+.+||+++.++++.+ .+.                  ..+.++.++|||
T Consensus       166 --------~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~~~~~~~~-~~~------------------~~~~~~~ll~~~  218 (413)
T PRK15403        166 --------FVHWKVLFAIIAVMGLIAFVGLLLAMPETVKRGAVPFS-AKS------------------VLRDFRNVFRNR  218 (413)
T ss_pred             --------hcCHHHHHHHHHHHHHHHHHHHHHhCCCCccccCCCCC-hHH------------------HHHHHHHHHcCH
Confidence                    334555557766666554433 4567886542211100 000                  012345678999


Q ss_pred             hHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhChhHHHHHHHH
Q 013991          283 PLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGV  362 (432)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  362 (432)
                      .++...+...+.......+....|.++++.     +|+++.+.++.......+..+++.....++.|+.++| .......
T Consensus       219 ~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~-----~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~-~~~~~~~  292 (413)
T PRK15403        219 LFLTGAATLSLSYIPMMSWVAVSPVILIDA-----GGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPR-FIWRAVP  292 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhChHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchh-HHHHHHH
Confidence            999887777777777677777788887765     6899999999888777777777654444444544433 3322222


Q ss_pred             HHHHHHHHhhHHHh-hhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHHHHhh
Q 013991          363 LTIPLLTSYPYIAM-LSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWFVKL  429 (432)
Q Consensus       363 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~~~  429 (432)
                      +..++..++..... ..+  .+....+...+.+.+.+...|......-. ..+..+|++.+.+.++..
T Consensus       293 ~~~ig~~l~~~~~~~~~~--~~~~~~~~~~l~~~G~~~~~p~~~~~al~-~~~~~~G~a~a~~~~~~~  357 (413)
T PRK15403        293 IQLVGLALLIVGNLLWPH--VWLWSVLGTSLYAFGIGLIFPTLFRFTLF-SNNLPKGTVSASLNMVIL  357 (413)
T ss_pred             HHHHHHHHHHHHHHHccc--cHHHHHHHHHHHHHHHHHHhHHHHHHHhc-cCCCCCcHHHHHHHHHHH
Confidence            22222222221110 111  12223344445555666666666643321 122346888887776653

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.97  E-value=1.3e-28  Score=233.77  Aligned_cols=324  Identities=17%  Similarity=0.099  Sum_probs=229.9

Q ss_pred             CchhHHHHHHHHHHhhccccchhhhHHH-HHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHH
Q 013991           39 PITELFSIWIIVLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM  117 (432)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~  117 (432)
                      .++.+..+.+..++..++..+..+.+|. +.+++|.|+.+      .|++.+++.++..+++++.|+++||+|||+++..
T Consensus        13 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~------~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~   86 (399)
T PRK05122         13 LTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFL------AGLVISLQYLATLLSRPHAGRYADTLGPKKAVVF   86 (399)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHH------HHHHHHHHHHHHHHhchhhHhHHhccCCcchHHH
Confidence            3467778888899999999999999986 56889999999      9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhh--------hhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHH
Q 013991          118 GTASVVIFNTLFGLS--------VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPA  188 (432)
Q Consensus       118 ~~~~~~~~~~~~~~~--------~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~  188 (432)
                      +.++.+++.+.+.++        .+++.+++.|+++|++.+...+. .+++.|++|+++|++++++.+.+..+|.++||.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~  166 (399)
T PRK05122         87 GLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAP  166 (399)
T ss_pred             HHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHH
Confidence            999888876665543        25678999999999998888776 888999999999999999999999999999999


Q ss_pred             HHhhhcccCCcCCCcccccccccCccchHHHHHHHHHHHHHHHHHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhh
Q 013991          189 LGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEE  268 (432)
Q Consensus       189 ~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (432)
                      +++.+.+                ..+|+..+.+.++..++.++.....|++++.   ++++ .                 
T Consensus       167 l~~~l~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~-----------------  209 (399)
T PRK05122        167 LGVLLYH----------------WGGLAGLGLLIMLLALLGLLLARPRPAVPPV---KGER-L-----------------  209 (399)
T ss_pred             HHHHHHH----------------cccHHHHHHHHHHHHHHHHHHHhcCCCCCCC---Cccc-h-----------------
Confidence            9999987                3445544455544443333222222222111   0000 0                 


Q ss_pred             ccCCCCccccccchhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHH
Q 013991          269 GREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLE  348 (432)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~  348 (432)
                           +.++.++  +.+.......+..........+.+.|..+      .|+  ...+...+..+++.++++ ++.+++.
T Consensus       210 -----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~~~~~~~~~~~~-~~~g~l~  273 (399)
T PRK05122        210 -----PFRRVLG--RVWPYGMGLALASIGFGTIATFITLYYAA------RGW--DGAALALTLFGVAFVGAR-LLFGNLI  273 (399)
T ss_pred             -----hHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------ccc--ccchHHHHHHHHHHHHHH-HHHHHHH
Confidence                 0111111  11111122222233334455566766543      243  234566677777777777 5889999


Q ss_pred             HHhChhHHHHHHHHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHHHH
Q 013991          349 RILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWFV  427 (432)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~  427 (432)
                      ||+++++.+..+..+..++...+....+.      ....+..++.+++.+..+|.......+..|+++||++.+.++..
T Consensus       274 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~  346 (399)
T PRK05122        274 NRLGGLRVAIVSLLVEILGLLLLWLAPSP------WMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVF  346 (399)
T ss_pred             HHhccHHHHHHHHHHHHHHHHHHHHhccH------HHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            99999998888777766666555443221      12334455666666677777777788889999999999988764

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.97  E-value=1.7e-29  Score=245.70  Aligned_cols=354  Identities=16%  Similarity=0.092  Sum_probs=235.4

Q ss_pred             HHHHHHHhhccccchhhhHHHHHHHhcCC--------ccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHH
Q 013991           46 IWIIVLCTALPISSLFPFLYFMIKDFQIA--------KREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM  117 (432)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--------~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~  117 (432)
                      +.+..++..++.....+..+.+..+++.+        ..+      .+++.+++.++..++++++|+++||+|||+++++
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~  106 (481)
T TIGR00879        33 AAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSL------WGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLI  106 (481)
T ss_pred             HHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhH------HHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHH
Confidence            44455666777888888888888888777        566      9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhh---hhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHH---
Q 013991          118 GTASVVIFNTLFGLS---VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG---  190 (432)
Q Consensus       118 ~~~~~~~~~~~~~~~---~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~---  190 (432)
                      +.++..++.+++.+.   .+++.+++.|+++|++.+...+. .+++.|++|+++|++++++.+.+..+|..+++.++   
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~  186 (481)
T TIGR00879       107 IALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGK  186 (481)
T ss_pred             HHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence            999999999888554   34568999999999998888775 89999999999999999999999999999999998   


Q ss_pred             hhhcccCCcCCCcccccccccCccchHHHHHHHHHHHHHHHHHhhcccccCCCCCCCcchhhhH--HHh-----------
Q 013991          191 GFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSY--DAL-----------  257 (432)
Q Consensus       191 ~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~--~~~-----------  257 (432)
                      ....+                ..+|+.++.+.++..++.++..+++||+++....+++.++...  .+.           
T Consensus       187 ~~~~~----------------~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (481)
T TIGR00879       187 VSLNN----------------TLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELL  250 (481)
T ss_pred             hcCCC----------------CccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHH
Confidence            54444                3455666677666666666666778887653211111111000  000           


Q ss_pred             h---hhhhhhhhhhccCCCCcccccc------chhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHH
Q 013991          258 E---SASAEVKEEEGREATPKKSLLK------NWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEV  328 (432)
Q Consensus       258 ~---~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~  328 (432)
                      +   ........+.+.....++..++      .+.++...+..+...........+.|.+..+      .|++..+.+..
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~  324 (481)
T TIGR00879       251 DELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFEN------AGVSTDHAFLV  324 (481)
T ss_pred             HHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHH------cCCCchHHHHH
Confidence            0   0000000000000111222222      1222222222222222233344455555443      58888888888


Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHhChhHHHHHHHHHHHHHHHHhhHHHhhhhh-----HHHHHHHHHHHHHHhhhhhHHHH
Q 013991          329 LAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGF-----GLAFLLNCASVVKNLLSVSIITG  403 (432)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~  403 (432)
                      .....++.+++. ++.+++.||+++|+.+..+..+..++++.+.........     ..+..+.....+.+.......+.
T Consensus       325 ~~~~~~~~~~~~-~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (481)
T TIGR00879       325 SIIVGAVNFAFT-FVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPV  403 (481)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCe
Confidence            888888888887 588999999999999888877777666665532111110     01122222223333334444566


Q ss_pred             HHHHHhccccccchhhhhhHHHHHh
Q 013991          404 LFILQNRAVVRVLTYTLSCHFWFVK  428 (432)
Q Consensus       404 ~~~~~~~~~p~~~~g~~~~~~~~~~  428 (432)
                      ...+..|..|++.|+++.++.+...
T Consensus       404 ~~~~~~~~~p~~~~~~~~~~~~~~~  428 (481)
T TIGR00879       404 PWVIVSEIFPLSLRPKGISIAVAAN  428 (481)
T ss_pred             ehhhhhccCChHHHHHHHHHHHHHH
Confidence            7778899999999999999887654

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.97  E-value=2.7e-29  Score=235.72  Aligned_cols=352  Identities=13%  Similarity=0.060  Sum_probs=242.1

Q ss_pred             HHHHHHHHHHhhccccchhhhHHH-HHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHH
Q 013991           43 LFSIWIIVLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (432)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~  121 (432)
                      ++..++..++.........+..|. +.+++|.++.+      .+++.+.+.++..+++++.|+++||+|||+.++++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~   76 (366)
T TIGR00886         3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQ------LGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLL   76 (366)
T ss_pred             hHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHH------hhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence            455677777778888888999995 88999999999      99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhh-hHHHHHHHHHHHhhhccchhhHHhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCC--
Q 013991          122 VVIFNTLFGLSV-NFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE--  198 (432)
Q Consensus       122 ~~~~~~~~~~~~-~~~~l~~~r~~~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~--  198 (432)
                      ..++.+++++++ +++.+++.|+++|++.+...+..++++|++|+++|++++++.....++|..+++.+++.+.....  
T Consensus        77 ~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~  156 (366)
T TIGR00886        77 LAIPCLWAGLAVQSYSVLLLLRLFIGIAGGSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFG  156 (366)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhchhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999 99999999999999876665568899999999999999999998888888888877776654110  


Q ss_pred             -cCCCcccccccccCccchHHH-HHHHH-HHHHHHHHHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhccCCCCc
Q 013991          199 -KYPNLFSSESLFGKFPYFLPC-LCISL-FAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPK  275 (432)
Q Consensus       199 -~~~~~~gw~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (432)
                       +.+...+||         ..+ ...++ ..+..++.....+|+++.++++++....  ++.+.       .+++.....
T Consensus       157 ~~~~~~~~w~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-------~~~~~~~~~  218 (366)
T TIGR00886       157 AGLPAHLAWG---------WAFVIVPAGILLLPALLIFFVGADTPPGKPATGKLSFK--GARWS-------VGTGALGDQ  218 (366)
T ss_pred             cccccccccc---------chhHHHHHHHHHHHHHHHHHhcccCCcccccchhcccc--ccccc-------ccchhHHHH
Confidence             001123443         333 22222 2223333444556655432211110000  00000       000011134


Q ss_pred             cccccchhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhChhH
Q 013991          276 KSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIM  355 (432)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  355 (432)
                      ++.+++++++...+..++..........+.|.|+++.     +|+++.+++.+.....+...+++ ++.+++.||+++|+
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~-~~~g~l~~r~g~~~  292 (366)
T TIGR00886       219 LKVFRDRHTWILALLYSVTFGSFLGVSSIFAMFFKDQ-----FGLSKVTAGAYASLGGLLGSLAR-PLGGAISDRLGGAR  292 (366)
T ss_pred             HHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCcHHHHHHHHHHHHHHHHHHh-hccchHHHhhccch
Confidence            5567788887777776666666667778888888765     68899999998888888888887 58899999999988


Q ss_pred             HHHHHHHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHHHH
Q 013991          356 VARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWFV  427 (432)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~  427 (432)
                      ....+......+..++........  ......+.........+...+.......+..| +++|+++|.+..+
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~  361 (366)
T TIGR00886       293 KLLMSFLGVAMGAFLVVLGLVSPL--SLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAI  361 (366)
T ss_pred             hHHHHHHHHHHHHHHHHhcCCCcc--hHHHHHHHHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHh
Confidence            777666555554444333221100  11111222222222333344456666677766 6889999987754

>TIGR00895 2A0115 benzoate transport

Probab=99.97  E-value=5.4e-29  Score=236.32  Aligned_cols=354  Identities=18%  Similarity=0.210  Sum_probs=243.1

Q ss_pred             chhHHHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHH
Q 013991           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (432)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~  119 (432)
                      ++.+....+..+...+......+..|.+.+++|.+..+      .+++.+.+.++..++.++.|+++||+|||+.+..+.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~   89 (398)
T TIGR00895        16 WRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQ------LGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSI   89 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHH------HHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHH
Confidence            34444555666677777777888889999999999988      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCC
Q 013991          120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE  198 (432)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~  198 (432)
                      ++..++.+++.++++++.+++.|++.|++.+...+. .+++.|++|+++|++++++.+.+..+|..++|.+++.+.+   
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~---  166 (398)
T TIGR00895        90 LLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIP---  166 (398)
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhh---
Confidence            999999999999999999999999999998887775 9999999999999999999999999999999999999987   


Q ss_pred             cCCCcccccccccCccchHHHHHHHHHHH-HHHHHHhhcccccCCCCCCCcch-hhhHHHhhhhhhhh-----hhhhc--
Q 013991          199 KYPNLFSSESLFGKFPYFLPCLCISLFAF-GVTIAAFWLPETLHRHNDDDDSC-DVSYDALESASAEV-----KEEEG--  269 (432)
Q Consensus       199 ~~~~~~gw~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~--  269 (432)
                          ..||+..+         .+.++..+ ..++...++||+++...+++++. +...++.+......     .+++.  
T Consensus       167 ----~~g~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (398)
T TIGR00895       167 ----VFGWRSLF---------YVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQ  233 (398)
T ss_pred             ----cccceeeh---------hhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhcccccccccccccccc
Confidence                45555544         55533333 34444566787754322221111 00001110000000     00000  


Q ss_pred             cCCCC-ccccccc---hhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHH
Q 013991          270 REATP-KKSLLKN---WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYP  345 (432)
Q Consensus       270 ~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~  345 (432)
                      +..+. .+..+++   +..+...+...+..........+.|.+..+      +|+++.+.+.......++..++. ++.+
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~-~~~~  306 (398)
T TIGR00895       234 GTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVE------LGFSLSLAATGGALFNFGGVIGS-IIFG  306 (398)
T ss_pred             chhhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHHHHHHH-HHHH
Confidence            00011 1112222   222233333334444444555566644433      58889999999999999999988 5899


Q ss_pred             HHHHHhChhHHHHHHHHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHH
Q 013991          346 FLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFW  425 (432)
Q Consensus       346 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~  425 (432)
                      ++.||+++++...... +..+...++..... .    ........++.+++.+...+...+...+..|++.|+++.|.+.
T Consensus       307 ~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~  380 (398)
T TIGR00895       307 WLADRLGPRVTALLLL-LGAVFAVLVGSTLF-S----PTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAI  380 (398)
T ss_pred             HHHhhcchHHHHHHHH-HHHHHHHHHHHHhh-C----HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence            9999999884443333 33332222222111 1    1123344556666777788889999999999999999999877


Q ss_pred             HHh
Q 013991          426 FVK  428 (432)
Q Consensus       426 ~~~  428 (432)
                      ...
T Consensus       381 ~~~  383 (398)
T TIGR00895       381 GIG  383 (398)
T ss_pred             HHH
Confidence            653

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.97  E-value=2.6e-28  Score=229.95  Aligned_cols=321  Identities=14%  Similarity=0.118  Sum_probs=235.3

Q ss_pred             hhHHHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHH
Q 013991           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (432)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~  120 (432)
                      +.++.+....++.........+.+|.+.+++|.|..+      .|++.+.+.++..+++++.|+++||+|||+++..+.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~------~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~   79 (381)
T PRK03633          6 RPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQ------VGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASL   79 (381)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            4577778888899999999999999999999999998      9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCc
Q 013991          121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK  199 (432)
Q Consensus       121 ~~~~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~  199 (432)
                      +..+++.+++++++++.++++|+++|++.+...+. .+.+.+..++++|+++++..+.+.++|..+||.+++.+.+    
T Consensus        80 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~----  155 (381)
T PRK03633         80 IFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVST----  155 (381)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc----
Confidence            99999999999999999999999999998887775 7778888999999999999999999999999999999876    


Q ss_pred             CCCcccccccccCccchHHHHHHHHHHHHHHHHHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhccCCCCccccc
Q 013991          200 YPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLL  279 (432)
Q Consensus       200 ~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (432)
                         ...|     ...|+.    .........+.....+|+  ..+++                        +..+.++.+
T Consensus       156 ---~~~~-----~~~~~~----~~~~~~~~~~~~~~~~~~--~~~~~------------------------~~~~~~~~~  197 (381)
T PRK03633        156 ---ELMS-----VLPWVT----GLVLAAILPLLFTRILNQ--QAENH------------------------DSTSIWPML  197 (381)
T ss_pred             ---cccc-----hHHHHH----HHHHHHHHHHHHhcccCC--CCCCC------------------------CCCCHHHHH
Confidence               1111     112221    111111111111112221  11000                        001233456


Q ss_pred             cchhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhChhHHHHH
Q 013991          280 KNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARI  359 (432)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  359 (432)
                      |++.++..................++|.|.++      .|.++.+.+.+.+...+..++++ ...+++.||+++++.+..
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~------~g~s~~~~g~~~~~~~~~~~~~~-~~~g~l~dr~~~~~~l~~  270 (381)
T PRK03633        198 KLRQARLGVNGCIISGIVLGSLYGLMPLYLNH------QGMSDASIGFWMALLVSAGILGQ-WPIGRLADRFGRLLVLRV  270 (381)
T ss_pred             HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHHHHHHH-hhhHHHHHHcCcHHHHHH
Confidence            67766654443444444444556677888765      37888899999999889999998 578999999999998887


Q ss_pred             HHHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHH
Q 013991          360 AGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFW  425 (432)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~  425 (432)
                      +..+..++...+.  . ..  .    ......+.+.......|...+...+..|+++++.+.+.++
T Consensus       271 ~~~~~~~~~~~~~--~-~~--~----~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  327 (381)
T PRK03633        271 QVFVVILGSIAML--S-QA--A----MAPALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALL  327 (381)
T ss_pred             HHHHHHHHHHHHh--h-hH--H----HHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence            7776666544332  1 11  0    1112233344455667888888899998888777666643

>PRK12382 putative transporter; Provisional

Probab=99.97  E-value=2.3e-28  Score=231.49  Aligned_cols=323  Identities=16%  Similarity=0.141  Sum_probs=222.6

Q ss_pred             chhHHHHHHHHHHhhccccchhhhHHH-HHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHH
Q 013991           40 ITELFSIWIIVLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (432)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~  118 (432)
                      .+.++.+.+..++..+..+...|.+|. +.+++|.|..+      .|++.+++.++..++++++|+++||+|||++++.+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~------~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~   87 (392)
T PRK12382         14 NFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTM------VGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQG   87 (392)
T ss_pred             cccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHH------HHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHH
Confidence            345666667777888888888899985 57899999999      99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhh--------hhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHH
Q 013991          119 TASVVIFNTLFGL--------SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPAL  189 (432)
Q Consensus       119 ~~~~~~~~~~~~~--------~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~  189 (432)
                      .+...++.+.+..        .++++.+++.|+++|++.+...+. .+++.|++|+|+|++++++.+.+..+|..+||.+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~  167 (392)
T PRK12382         88 MLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPL  167 (392)
T ss_pred             HHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHH
Confidence            8877766543321        358899999999999998877775 8899999999999999999999999999999999


Q ss_pred             HhhhcccCCcCCCcccccccccCccchHHHHHHHHHHHHHHHHHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhc
Q 013991          190 GGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEG  269 (432)
Q Consensus       190 ~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (432)
                      ++.+.+                .++|+..+.+..+..++........||.++++   +++ +                  
T Consensus       168 ~~~l~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~------------------  209 (392)
T PRK12382        168 GLLLHS----------------HFGFAALALTTMVLPLLAWAFNGTVRKVPAHA---GER-P------------------  209 (392)
T ss_pred             HHHHHh----------------ccChHHHHHHHHHHHHHHHHHHHhccCCCCCc---ccC-c------------------
Confidence            999987                34455444443333322222222223321110   000 0                  


Q ss_pred             cCCCCccccccchhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHH
Q 013991          270 REATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLER  349 (432)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~  349 (432)
                          +.++..+  .++...+...+..........+.+.|+.+.      +++  +.+......+++.++++ +..+++.|
T Consensus       210 ----~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~~~~~~~~~~~-~~~g~l~~  274 (392)
T PRK12382        210 ----SLWSVVG--LIWKPGLGLALQGVGFAVIGTFVSLYFASK------GWA--MAGFTLTAFGGAFVLMR-VLFGWMPD  274 (392)
T ss_pred             ----hHHHHHH--HHHHhHHHHHHHHHHHhHHHHHHHHHHHhc------CCc--hhHHHHHHHHHHHHHHH-HHHHHHHH
Confidence                0001111  111111112222233334445666666542      443  34555666677777777 58899999


Q ss_pred             HhChhHHHHHHHHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHHHH
Q 013991          350 ILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWFV  427 (432)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~  427 (432)
                      |+++++.+..+..+..++..++......      ....+...+.+.+.+...|.......+..|+++||++.|.++..
T Consensus       275 r~g~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~  346 (392)
T PRK12382        275 RFGGVKVAIVSLLVETVGLLLLWLAPTA------WVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAF  346 (392)
T ss_pred             hcCCCeehHHHHHHHHHHHHHHHHcccH------HHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            9999998888877777766555443211      12333445555666667778888888999999999999998765

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.97  E-value=7.1e-29  Score=239.68  Aligned_cols=284  Identities=12%  Similarity=0.103  Sum_probs=204.6

Q ss_pred             chhHHHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHH
Q 013991           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (432)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~  119 (432)
                      ++.+...+...++.........+..|.+.+++|.+.++      .+++.+.+.+++.+++++.|+++||+|||+++..+.
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~------~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~  108 (476)
T PLN00028         35 MRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSD------IGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLL  108 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHH
Confidence            34455666667777777777888899999999999998      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHhhhccchhhHHhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCc
Q 013991          120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK  199 (432)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~  199 (432)
                      ++.+++.++++++++++.+++.|++.|++.+...+...+++|++|+++|++++++.+...++|..+++.+.+.+......
T Consensus       109 ~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~  188 (476)
T PLN00028        109 MLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFVSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKD  188 (476)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999998776555567889999999999999999887777877777666554321000


Q ss_pred             CCCcccccccccCccchHHHHHHHHHHHHHHHHHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhccCCCCccccc
Q 013991          200 YPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLL  279 (432)
Q Consensus       200 ~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (432)
                          .+..   +..+||..+.+.+++.++..+..++++++++....+    + .    ++..  .. ++.+.....++.+
T Consensus       189 ----~~~~---~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~~~~~----~-~----~~~~--~~-~~~~~~~~~~~~~  249 (476)
T PLN00028        189 ----AGAP---SFTAWRIAFFVPGLLHIIMGILVLTLGQDLPDGNYR----E-L----KKSG--TM-PKDSFSKVLRYGV  249 (476)
T ss_pred             ----cCCc---chhhhHHHHHHHHHHHHHHHHHHHHHcCcCCCCchh----h-H----HhcC--cc-ccccHHHHHHHHH
Confidence                0000   012455555777666665444444444332211100    0 0    0000  00 0000011234567


Q ss_pred             cchhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhChh
Q 013991          280 KNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPI  354 (432)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~  354 (432)
                      ++++++...+.++........+..+.|.|+.+.     +|++..+++.+.+..+++..+++ +++++++||+++|
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-----~g~s~~~a~~~~~~~~~~~~ig~-~~~G~lsDr~~~r  318 (476)
T PLN00028        250 TNYRTWILALTYGYSFGVELTMDNIIAEYFYDR-----FGLSLETAGAIAASFGLMNLFAR-PAGGYLSDVAARR  318 (476)
T ss_pred             cCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHh
Confidence            788877776666655555556667788887654     68999999999999999999998 5899999998765

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.97  E-value=1.8e-28  Score=229.72  Aligned_cols=290  Identities=12%  Similarity=0.069  Sum_probs=214.1

Q ss_pred             CCCchhHHHHHHHHHHhhccccchhhhHHHHHH-HhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHH
Q 013991           37 GLPITELFSIWIIVLCTALPISSLFPFLYFMIK-DFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVI  115 (432)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l  115 (432)
                      +..+|.+...++..++........++..+.+.+ ++|+|++|      .+++.+++.+++.++.++.|++.||+|.|+++
T Consensus        30 ~~a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q------~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~  103 (462)
T PRK15034         30 HIARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQ------LFLLTALPSVSGALLRVPYSFMVPIFGGRRWT  103 (462)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCChHHH
Confidence            344567778888888888899999999998876 89999999      99999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHhhhccchhhHHhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHH
Q 013991          116 IMGTASVVIFNTLFGLS-----VNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG  190 (432)
Q Consensus       116 ~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~~~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~  190 (432)
                      .++.++..+.+++.+++     ++++.+++.|++.|++.+.+.+....+++++|+++||+++|+.....++|..++++++
T Consensus       104 ~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gigg~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~  183 (462)
T PRK15034        104 VFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFAGANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVA  183 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHH
Confidence            99999999999999987     8999999999999998554444599999999999999999999766677776665555


Q ss_pred             hhhcccCCcCCCccccccccc----CccchHHHHHHHHHHHHHHHHH-hhcccccCCCCCCCcchhhhHHHhhhhhhhhh
Q 013991          191 GFLAQPAEKYPNLFSSESLFG----KFPYFLPCLCISLFAFGVTIAA-FWLPETLHRHNDDDDSCDVSYDALESASAEVK  265 (432)
Q Consensus       191 ~~l~~~~~~~~~~~gw~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (432)
                      ..+....  .-..+||+....    ..+|+....+...+.++..+.. +.+++.++ .+.                    
T Consensus       184 p~~i~~~--l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~-~~~--------------------  240 (462)
T PRK15034        184 PLVIFVP--VFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS-SRA--------------------  240 (462)
T ss_pred             HHHHHHH--HHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-ccc--------------------
Confidence            4433100  000345544331    2336666666655555544333 33333221 110                    


Q ss_pred             hhhccCCCCccccccchhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHH
Q 013991          266 EEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYP  345 (432)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~  345 (432)
                           +.+..+..+|+|..|...+.+++.+..+.++..++|.|.++.     +  +.........+..+...+.+ +++|
T Consensus       241 -----~~~~~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~-----~--~~~~~l~~~~l~~l~~~l~r-plgG  307 (462)
T PRK15034        241 -----SIADQLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQ-----F--PDVNILRLAFFGPFIGAIAR-SVGG  307 (462)
T ss_pred             -----CHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----c--ChHHHHHHHHHHHHHHHHHH-HhhH
Confidence                 011345678999999999999999989899998999887663     2  22222222333345566666 6999


Q ss_pred             HHHHHhChhHHHHHHHHHHHHHH
Q 013991          346 FLERILGPIMVARIAGVLTIPLL  368 (432)
Q Consensus       346 ~l~~~~~~~~~~~~~~~~~~~~~  368 (432)
                      +++||+|+++++.++.+...+..
T Consensus       308 ~LADRiG~~~vl~~~~i~~~i~~  330 (462)
T PRK15034        308 AISDKFGGVRVTLINFIFMAIFS  330 (462)
T ss_pred             HHHHhcCchHHHHHHHHHHHHHH
Confidence            99999999999988877665554

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.97  E-value=7e-29  Score=241.94  Aligned_cols=374  Identities=13%  Similarity=0.084  Sum_probs=235.2

Q ss_pred             CchhHHHHHHHHHHhhccccchhhhHHHHHHHhc-----CCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChH
Q 013991           39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQ-----IAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKP  113 (432)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~  113 (432)
                      +++.+....++.+.++++...++...|.+.+++.     .+..+      .+++.+.+.++..++++++|+++||+|||+
T Consensus        14 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~   87 (502)
T TIGR00887        14 HFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSV------SAAVNGSASIGTLAGQLFFGWLADKLGRKR   87 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHH------HHHHHHHHHHHHHHHHHHHHHHHHhhccHH
Confidence            3344556777888899999888888887776531     22333      789999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhh------HHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHH
Q 013991          114 VIIMGTASVVIFNTLFGLSVN------FWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIG  186 (432)
Q Consensus       114 ~l~~~~~~~~~~~~~~~~~~~------~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g  186 (432)
                      ++.++.++..++.++++++++      ++.++++|+++|++.|...+. ..+++|++|+++|++++++.+....+|..++
T Consensus        88 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g  167 (502)
T TIGR00887        88 VYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAG  167 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999888765      789999999999998887775 9999999999999999999999999999999


Q ss_pred             HHHHhhhcccCCcCC-Ccc-----ccccc-ccCccchHHHHHHHHHHHHHHHHHhhcccccCCCCCCCcchhhhHHHhhh
Q 013991          187 PALGGFLAQPAEKYP-NLF-----SSESL-FGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALES  259 (432)
Q Consensus       187 ~~~~~~l~~~~~~~~-~~~-----gw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~  259 (432)
                      +.++..+.....+.. ..-     .++.. ...++||.++.+.++..++.++..+++||+|++...+++++++..+..++
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~  247 (502)
T TIGR00887       168 AIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSA  247 (502)
T ss_pred             HHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHH
Confidence            999887653111000 000     00000 01357888888888887777777788999999743322221111011100


Q ss_pred             h-----hhhhhh------hhccCCCCccccccc---hhHHHHHH----HHHHHHHHhhhHHHHHHhhhcCCCcCCCcccc
Q 013991          260 A-----SAEVKE------EEGREATPKKSLLKN---WPLMSSII----VYCVFSLHDMAYSEIFSLWANSPKKLGGLNYS  321 (432)
Q Consensus       260 ~-----~~~~~~------~~~~~~~~~~~~~~~---~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s  321 (432)
                      .     +++.++      +++.....+++++++   ++.+...+    ..+...+...+...+.|.++.+      .|++
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~------~G~~  321 (502)
T TIGR00887       248 VLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSA------IGYS  321 (502)
T ss_pred             HhccccccCcccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHH------HcCC
Confidence            0     000000      000011235555542   12211111    1222222223333334544432      3554


Q ss_pred             cchhhH------------HHHHHHHHHHHHHHHhHHHHHHHhChhHHHHHHHHHHHHHHHHhhHHHhhhhhHHHHHHHHH
Q 013991          322 TQMVGE------------VLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCA  389 (432)
Q Consensus       322 ~~~~g~------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (432)
                      ..+.+.            ......++.+++. ++.+++.||+|||+++..+..+..+++.++............  ....
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~-~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~  398 (502)
T TIGR00887       322 PPAATNNAYEELYKTAVGNLIIALAGTVPGY-WVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGF--LAIY  398 (502)
T ss_pred             CCccchhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHH--HHHH
Confidence            432211            1222233444454 588999999999999888877766665555443211110111  1111


Q ss_pred             HHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHHHH
Q 013991          390 SVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWFV  427 (432)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~  427 (432)
                      .....++..+..+..+.+.+|..|++.|+++.|+.+.+
T Consensus       399 ~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~  436 (502)
T TIGR00887       399 VLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAAS  436 (502)
T ss_pred             HHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHH
Confidence            11111223334556777889999999999999987754

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.97  E-value=2e-28  Score=230.80  Aligned_cols=325  Identities=19%  Similarity=0.209  Sum_probs=231.4

Q ss_pred             ccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHhhhhh
Q 013991           55 LPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVN  134 (432)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~  134 (432)
                      +......|.+|.+.+++|.++.+      .+++.+++.++..++.++.|+++||+|||+++..+.++.+++.+++.++++
T Consensus         5 ~~~~~~~p~~~~~~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~   78 (377)
T PRK11102          5 LAIDMYLPALPVIAADFGVSAGS------VQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQT   78 (377)
T ss_pred             hHHHHHhccHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHcc
Confidence            44566779999999999999999      999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCcCCCcccccccccCc
Q 013991          135 FWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKF  213 (432)
Q Consensus       135 ~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~  213 (432)
                      ++.+++.|++.|++.+...+. .+++.|++|+++|++++++.+....+|..++|.+++.+.+                .+
T Consensus        79 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~----------------~~  142 (377)
T PRK11102         79 IDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLV----------------WF  142 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------Hc
Confidence            999999999999988887775 8999999999999999999999999999999999999987                34


Q ss_pred             cchHHHHHHHHHHHHH-HHHHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhccCCCCccccccchhHHHHHHHHH
Q 013991          214 PYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYC  292 (432)
Q Consensus       214 ~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (432)
                      +|+.++.+.++..++. ++..+.+||+++++++++.+.+.                  .....++.++++.++...+...
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~  204 (377)
T PRK11102        143 SWHAIFWVLALAAILAAALVFFFIPETLPKERRQPFHLRT------------------TIRNFASLFRHKRVLGYMLASG  204 (377)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHhCCccCcccccCCCChHH------------------HHHHHHHHHcChHHHHHHHHHH
Confidence            4555556666555553 33445677754332111100000                  0012345677777766555544


Q ss_pred             HHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhChhHHHHHHHHHHHHHHHHhh
Q 013991          293 VFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYP  372 (432)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  372 (432)
                      +.......+....|.++.+.     +|+++.+.|.......+...+++ ++.+++.||+++|+.+..+..+..+..+.+.
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~-----~g~s~~~~g~~~~~~~~~~~~~~-~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~  278 (377)
T PRK11102        205 FSFAGMFSFLTAGPFVYIEL-----NGVSPQNFGYYFALNIVFLFVMT-IINSRFVRRVGALNMLRFGLWIQFIMGIWLV  278 (377)
T ss_pred             HHHHHHHHHHHcCHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444445555443     68899999999999999998888 5889999999999988887765444322222


Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHHHHh
Q 013991          373 YIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWFVK  428 (432)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~~  428 (432)
                      .....+. ..+. ..+.............+.......+..| +.+|++.+.+...+
T Consensus       279 ~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~  331 (377)
T PRK11102        279 VSALLDL-GFWA-LVVGVAAFVGCVSMISSNAMAVILDEFP-HMAGTASSLAGTLR  331 (377)
T ss_pred             HHHHHhh-hHHH-HHHHHHHHHHHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHH
Confidence            2211111 1111 1122222222333334444555666666 78888888876654

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.97  E-value=3.2e-28  Score=229.34  Aligned_cols=279  Identities=17%  Similarity=0.238  Sum_probs=215.9

Q ss_pred             hhHHHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHH
Q 013991           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (432)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~  120 (432)
                      +.++.+....++.........+.+|.+.+|+|.+..+      .|+..+.+.++..+++++.|+++||+|||+++.++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~------~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~   76 (382)
T PRK10091          3 KVILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPA------AGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVA   76 (382)
T ss_pred             chHHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHH------HhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHH
Confidence            4566677788888888888999999999999999999      9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCc
Q 013991          121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK  199 (432)
Q Consensus       121 ~~~~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~  199 (432)
                      +.+++.++++++++++.+++.|++.|++.+...+. ..++.|++|+++|++++++...+..+|..++|.+++.+.+    
T Consensus        77 ~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~----  152 (382)
T PRK10091         77 LCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQ----  152 (382)
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhh----
Confidence            99999999999999999999999999998887765 8889999999999999999999999999999999999987    


Q ss_pred             CCCcccccccccCccchHHHHHHHHHHHHHH-HHHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhccCCCCcccc
Q 013991          200 YPNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSL  278 (432)
Q Consensus       200 ~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (432)
                         .+|         ||..+.+.++..++.. ...+.+||.+++.+  .+ .  .                    ...+.
T Consensus       153 ---~~g---------wr~~f~~~~~~~~~~~~~~~~~lp~~~~~~~--~~-~--~--------------------~~~~~  195 (382)
T PRK10091        153 ---EFS---------WRYTFLLIAVFNIAVLASIYFWVPDIRDEAK--GG-L--R--------------------EQFHF  195 (382)
T ss_pred             ---hcc---------HHHHHHHHHHHHHHHHHHHHHhCCCCCcccc--cC-H--H--------------------HHHHH
Confidence               344         4555566666554433 33455777532111  00 0  0                    00123


Q ss_pred             ccchhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhChhHHHH
Q 013991          279 LKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVAR  358 (432)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  358 (432)
                      +|++..+.......+..........+.+.++.+.     +|+++.+.+.+.+..+++..+++ ++.+++.||+++++...
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~s~~~~~~~~~~~~~~~~ig~-~~~g~l~~r~~~~~~~~  269 (382)
T PRK10091        196 LRSPAPWLIFAATMFGNAGVFAWFSYIKPYMMFI-----SGFSETSMTFIMMLVGLGMVLGN-LLSGRLSGRYSPLRIAA  269 (382)
T ss_pred             hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHh-HHHheeccccCchhHHH
Confidence            4556555544433333333333334445555443     68899999999999999999998 58899999999999888


Q ss_pred             HHHHHHHHHHHHhh
Q 013991          359 IAGVLTIPLLTSYP  372 (432)
Q Consensus       359 ~~~~~~~~~~~~~~  372 (432)
                      .+..+..++.+++.
T Consensus       270 ~~~~~~~i~~~~~~  283 (382)
T PRK10091        270 VTDFIIVLALLMLF  283 (382)
T ss_pred             HHHHHHHHHHHHHH
Confidence            87777666655443

>PRK11043 putative transporter; Provisional

Probab=99.97  E-value=7.1e-28  Score=228.84  Aligned_cols=333  Identities=17%  Similarity=0.136  Sum_probs=242.4

Q ss_pred             HHHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHH
Q 013991           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV  122 (432)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~  122 (432)
                      +....+...+..+..+.+.|.+|.+.+++|.++++      .++..+++.++..++++++|+++||+|||+.+..+.++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~------~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~   81 (401)
T PRK11043          8 LVYLAGLSMLGFLATDMYLPAFKAIQADLQTSASA------VSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLF   81 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCHHH------HHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHH
Confidence            34444456666677788889999999999999999      999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCcCC
Q 013991          123 VIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYP  201 (432)
Q Consensus       123 ~~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~  201 (432)
                      .++.+++.++++++.+++.|+++|++.+...+. .+++.|++|+++|++..+.......+|..++|.+++++.+      
T Consensus        82 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~------  155 (401)
T PRK11043         82 ALGSLGMLWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLN------  155 (401)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------
Confidence            999999999999999999999999987776665 8889999999999999999998999999999999999987      


Q ss_pred             CcccccccccCccchHHHHHHHHHHHHHHHHHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhccCCCCccccccc
Q 013991          202 NLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKN  281 (432)
Q Consensus       202 ~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (432)
                                .++|+..+.+.++..++..+..++++|++++++++   +                    ++...++.+|+
T Consensus       156 ----------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--------------------~~~~~~~~~~~  202 (401)
T PRK11043        156 ----------HFGWQAIFATLFAITLLLILPTLRLKPSKKARKQS---Q--------------------DALTFKQLLKS  202 (401)
T ss_pred             ----------cCChHHHHHHHHHHHHHHHHHHHHcCCCCCccccc---h--------------------HHHHHHHHHcC
Confidence                      34455555666666655544445555543221100   0                    00134456677


Q ss_pred             hhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhChhHHHHHHH
Q 013991          282 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG  361 (432)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  361 (432)
                      ++++...+...+.......+..+.|.+.++      +|+++.+.|.......++..+++ ...+++.||+++++......
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~------~g~s~~~~g~~~~~~~~~~~~g~-~~~~~l~~r~~~~~~~~~~~  275 (401)
T PRK11043        203 KTYLGNVLIFAACSAAFFAWLTGSPFILEQ------MGYSPADIGLSYVPQTIAFLVGG-YGCRAALQKWGGEQLLPWLL  275 (401)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhHHHHHH------cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCHHHHHHHHH
Confidence            776655555444444445556667776654      58899999988887777888887 57889999999888766655


Q ss_pred             HHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHHHHhh
Q 013991          362 VLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWFVKL  429 (432)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~~~  429 (432)
                      ....+....+.......... +....+...+.+.+.+..+|.......+..| +++|++.+.++.+..
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~  341 (401)
T PRK11043        276 VLFAVSVIAIWLASLLSHPS-LVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQL  341 (401)
T ss_pred             HHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHH
Confidence            54444433322221111111 1223333444555666777777777777666 478999999887654

>PRK03699 putative transporter; Provisional

Probab=99.97  E-value=8.3e-28  Score=227.53  Aligned_cols=327  Identities=13%  Similarity=0.148  Sum_probs=237.1

Q ss_pred             chhHHHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHH
Q 013991           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (432)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~  119 (432)
                      ++..+...+..++.........+.+|.+.+++|.|.++      .+++.+.+.+++.+++++.|++.||+|||+++..+.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~------~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~   79 (394)
T PRK03699          6 IKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSS------MSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGF   79 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            34455666777778787888889999999999999999      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCC
Q 013991          120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE  198 (432)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~  198 (432)
                      ++.+++.++++++++++.+++.|+++|++.+...+. .+++.|.+|+++|++.++..+....+|..++|.+.+.+.+.  
T Consensus        80 ~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~--  157 (394)
T PRK03699         80 ALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLAR--  157 (394)
T ss_pred             HHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence            999999999999999999999999999988876664 88999999999999999999899999999999998887641  


Q ss_pred             cCCCcccccccccCccchHHHHHHHHHHHHHHHHHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhccCCCCcccc
Q 013991          199 KYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSL  278 (432)
Q Consensus       199 ~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (432)
                                   ..+||.++.+.++..++..+..++ ++.|+.++++++ ++                ++    ..+. 
T Consensus       158 -------------~~gw~~~f~~~~~~~~~~~~~~~~-~~~p~~~~~~~~-~~----------------~~----~~~~-  201 (394)
T PRK03699        158 -------------SIEWYWVYACIGLVYVAIFILTLF-SEFPALGKHAPK-AD----------------KP----VAKE-  201 (394)
T ss_pred             -------------cccHHHHHHHHHHHHHHHHHHHHh-cCCccccccCcc-cc----------------Cc----cccc-
Confidence                         234555556666555443333332 222211111000 00                00    0011 


Q ss_pred             ccchhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhChhHHHH
Q 013991          279 LKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVAR  358 (432)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  358 (432)
                      ..++.++...+..++.......+..+.|.|+++.     +|+++.+.+.+.+...++..+++ ++.+++.||+++|+.+.
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-----~g~s~~~~~~~~~~~~~~~~ig~-~~~g~l~dr~~~~~~l~  275 (394)
T PRK03699        202 KWGIGVLFLAIAALLYILAQLTFISWVPEYAQKK-----FGMSLEDAGNLVSNFWMAYMVGM-WIFSFIVRFFDLQRILT  275 (394)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCChHHhhHHHHHHHHHHHHHH-HHHHHHHHHhchhhHHH
Confidence            1235555555666666666677788899998665     68999999999999999999998 58999999999999887


Q ss_pred             HHHHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhH
Q 013991          359 IAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCH  423 (432)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~  423 (432)
                      ....+..+.+.++....+..      ...+..+..+++.+..++...+...+..|++ +++..+.
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-~~~~~g~  333 (394)
T PRK03699        276 VLAGLALVLMYLFVNTDDPS------HLLYAILGLGFFSSAIYTTIITLGSQQTKVA-SPKLVNF  333 (394)
T ss_pred             HHHHHHHHHHHHHHHcCCch------HHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-CHHHHHH
Confidence            76666555444443222111      1223344455556666777777777766644 3444443

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.97  E-value=1.7e-28  Score=236.17  Aligned_cols=346  Identities=10%  Similarity=0.006  Sum_probs=226.2

Q ss_pred             HHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHH
Q 013991           47 WIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFN  126 (432)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~  126 (432)
                      .+......+.........|++.++ |.+..+      .++..+.+.++..+++++.|+++||+|||++++++.++.+++.
T Consensus        35 ~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~------~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~  107 (452)
T PRK11273         35 FFGYAAYYLVRKNFALAMPYLVEQ-GFSRGD------LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVM  107 (452)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHc-CCCHHH------HHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHH
Confidence            334444444545566777888887 999998      9999999999999999999999999999999999999999999


Q ss_pred             HHHhhhh----hHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHH-HHHHHHhhhcccCCcC
Q 013991          127 TLFGLSV----NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLI-IGPALGGFLAQPAEKY  200 (432)
Q Consensus       127 ~~~~~~~----~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~-~g~~~~~~l~~~~~~~  200 (432)
                      +++++++    +++.+++.|++.|++.+...+. ...+.|++|+++|++++++.+.+.++|.. .+|+++..+..     
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~-----  182 (452)
T PRK11273        108 LFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAW-----  182 (452)
T ss_pred             HHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-----
Confidence            8888753    6888999999999988877664 77889999999999999999999998864 45655443332     


Q ss_pred             CCcccccccccCccchHHHHHHHHHHHH-HHHHHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhccCCCC-cccc
Q 013991          201 PNLFSSESLFGKFPYFLPCLCISLFAFG-VTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATP-KKSL  278 (432)
Q Consensus       201 ~~~~gw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  278 (432)
                                 ..+|+..+++.+++.++ .++..+++||+++....+++ ++.. ++..+..++.++++.+.... .+..
T Consensus       183 -----------~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  249 (452)
T PRK11273        183 -----------FNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPI-EEYK-NDYPDDYNEKHEQELTAKQIFMQYV  249 (452)
T ss_pred             -----------hccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCCh-hhhh-hccccccccccCCCccHHHHHHHHH
Confidence                       12355555666655544 44555677877654211111 0000 00000000000000000000 1236


Q ss_pred             ccchhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHh--ChhHH
Q 013991          279 LKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL--GPIMV  356 (432)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~  356 (432)
                      +|++.++...+..++..........++|.|+++.     .|++..+++....+..++.+++. ++.++++||+  +|++.
T Consensus       250 ~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~-----~g~s~~~~~~~~~~~~~~~~~g~-~~~G~l~dr~~~~r~~~  323 (452)
T PRK11273        250 LPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEV-----KHFALDKSSWAYFLYEYAGIPGT-LLCGWMSDKVFRGNRGA  323 (452)
T ss_pred             HcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHccCCcch
Confidence            7888888887877777777777888999999875     57888889988888888888887 5899999998  44433


Q ss_pred             HH-HHHHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHHHH
Q 013991          357 AR-IAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWFV  427 (432)
Q Consensus       357 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~  427 (432)
                      .. ....+..++...+.... ...  .+ ...+.....+.......+....+..+..|++.||+++|.+.+.
T Consensus       324 ~~~~~~~l~~~~~~~~~~~~-~~~--~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~  391 (452)
T PRK11273        324 TGVFFMTLVTIATIVYWLNP-AGN--PT-VDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLF  391 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHhc-ccC--hH-HHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHH
Confidence            22 22222222222221111 111  11 1112222222222222333445667899999999999998764

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.97  E-value=2e-28  Score=233.64  Aligned_cols=333  Identities=13%  Similarity=0.064  Sum_probs=241.6

Q ss_pred             HHHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHH
Q 013991           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV  122 (432)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~  122 (432)
                      +..+....++..+......+.+|.+.++++.+..+      .|++.+.+.++..+++++.|+++||+|||+++..+.++.
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~   92 (417)
T PRK10489         19 FRAVFIARFISIFGLGLLGVAVPVQIQMMTGSTLQ------VGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTC   92 (417)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHH
Confidence            33445556667777778888899999999988888      999999999999999999999999999999999888877


Q ss_pred             HHHHHHHhh-----hhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhccc
Q 013991          123 VIFNTLFGL-----SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP  196 (432)
Q Consensus       123 ~~~~~~~~~-----~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  196 (432)
                      +++.+..+.     .++++.+++.|++.|++.+...+. .+++.|+.|+++|+++.++.+...++|..+||.+++.+.+ 
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~-  171 (417)
T PRK10489         93 GLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIA-  171 (417)
T ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHH-
Confidence            776655442     567889999999999988777665 8899999999999999999999999999999999999987 


Q ss_pred             CCcCCCcccccccccCccchHHHHHHHHHHHHHHHHHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhccCCCCcc
Q 013991          197 AEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKK  276 (432)
Q Consensus       197 ~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (432)
                            ..|         |+..+.+.++..++..+..+.+||++++++++++..+    +              .....+
T Consensus       172 ------~~~---------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~--------------~~~~~~  218 (417)
T PRK10489        172 ------AGG---------VAWNYGLAAAGTFITLLPLLRLPALPPPPQPREHPLR----S--------------LLAGFR  218 (417)
T ss_pred             ------HHh---------hHHHHHHHHHHHHHHHHHHHhCCCCCCCCcccccchH----H--------------HHHHHH
Confidence                  333         4444455555555555555667765433211110000    0              001233


Q ss_pred             ccccchhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhChhHH
Q 013991          277 SLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMV  356 (432)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  356 (432)
                      ..+++|.++...+..++... ..+...++|.|..+.     +|.++.+.|.+.+..+++.+++. ++.+++.||.++++.
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~-----~g~~~~~~g~~~~~~~~g~~ig~-~~~~~l~~~~~~~~~  291 (417)
T PRK10489        219 FLLASPVVGGIALLGGLLTM-ASAVRVLYPALADEV-----WQMGAAQIGLLYAAVPLGAALGA-LTSGWLAHSARPGLL  291 (417)
T ss_pred             HHHcChHHHHHHHHHHHHHH-HHhHHHhhHHHHHhc-----cCCChhHhHHHHHHHHHHHHHHH-HHHHHhhhccCcchH
Confidence            45677776555444433332 345666778887765     68889999999999999998888 588899998777777


Q ss_pred             HHHHHHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHHHHh
Q 013991          357 ARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWFVK  428 (432)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~~  428 (432)
                      +..+..+..++++++......      ....+..++.+++.+...+...++..+..|++.||+++|.+....
T Consensus       292 l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~  357 (417)
T PRK10489        292 MLLSTLGSFLAVGLFGLMPMW------ILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQN  357 (417)
T ss_pred             HHHHHHHHHHHHHHHHccchH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Confidence            777766666665554433211      123334444555555556677788899999999999999886543

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.97  E-value=5.9e-28  Score=235.92  Aligned_cols=357  Identities=14%  Similarity=0.126  Sum_probs=239.2

Q ss_pred             CchhHHHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHH
Q 013991           39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (432)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~  118 (432)
                      +++.+..+++..++..++.....+..|.+.+++|.++.+      .+++.+.+.++..+++++.|+++||+|||+++.++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~   91 (496)
T PRK03893         18 QWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQ------AASLISAAFISRWFGGLLLGAMGDRYGRRLAMVIS   91 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence            445666788888889999999999999999999999999      99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccC
Q 013991          119 TASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (432)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  197 (432)
                      .++.+++.++++++++++.+++.|++.|++.+...+. ..++.|.+|+++|++++++...+.++|..++|.+++.+.+  
T Consensus        92 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~--  169 (496)
T PRK03893         92 IVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVP--  169 (496)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence            9999999999999999999999999999987776665 8999999999999999999999999999999999999987  


Q ss_pred             CcCCCcccccccccCccchHHHHHHHHHHHHHHHHHhhcccccCCCCCCCcchh--hhHHHhhhhhhhhhh---------
Q 013991          198 EKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCD--VSYDALESASAEVKE---------  266 (432)
Q Consensus       198 ~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---------  266 (432)
                           .+||         +..+.+.++..++.++....+||++++.++++++.+  ...+.....+.....         
T Consensus       170 -----~~~w---------~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (496)
T PRK03893        170 -----VWGW---------RALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAA  235 (496)
T ss_pred             -----cCCH---------HHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHHH
Confidence                 3444         444455444333333344456665432221111100  000000000000000         


Q ss_pred             ----hhccCC-CCc-------------------cccccchhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCccccc
Q 013991          267 ----EEGREA-TPK-------------------KSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYST  322 (432)
Q Consensus       267 ----~~~~~~-~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~  322 (432)
                          .-.... ..+                   ....+.+.........+...........++|.|+++.     +|++.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~-----~g~~~  310 (496)
T PRK03893        236 ALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTD-----LGYDP  310 (496)
T ss_pred             HHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhh-----cCCCH
Confidence                000000 000                   0000001111111111111111223456778888654     68999


Q ss_pred             chhhHHHHHHHHHHHHHHHHhHHHHHHHhChhHHHHHHHHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHH
Q 013991          323 QMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIIT  402 (432)
Q Consensus       323 ~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (432)
                      .+++.+.+...++.++++ ++.+++.||+++++.+..+..+..+..+.+..... .  .. .......+..+....+..+
T Consensus       311 ~~~g~~~~~~~~~~~~g~-~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~-~--~~-~~~~~~~~~~~~~~~~~~~  385 (496)
T PRK03893        311 HTVANVLFFSGFGAAVGC-CVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGG-A--NV-WVLGLLLFFQQMLGQGISG  385 (496)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-c--HH-HHHHHHHHHHHHHhcccch
Confidence            999999999999999998 58999999999999887776555544433222211 1  11 1111222222222333345


Q ss_pred             HHHHHHhccccccchhhhhhHHHHH
Q 013991          403 GLFILQNRAVVRVLTYTLSCHFWFV  427 (432)
Q Consensus       403 ~~~~~~~~~~p~~~~g~~~~~~~~~  427 (432)
                      .....+.+..|+++||++++.++..
T Consensus       386 ~~~~~~~~~~~~~~~g~~~~~~~~~  410 (496)
T PRK03893        386 LLPKLIGGYFDTEQRAAGLGFTYNV  410 (496)
T ss_pred             hhHHHHHhhCCHHHhhcccchhhhh
Confidence            5667888999999999999887654

>TIGR00898 2A0119 cation transport protein

Probab=99.97  E-value=1.7e-28  Score=240.18  Aligned_cols=327  Identities=16%  Similarity=0.181  Sum_probs=230.9

Q ss_pred             hhHHHHHHHhcCC---ccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 013991           62 PFLYFMIKDFQIA---KREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMA  138 (432)
Q Consensus        62 ~~~~~~~~~~~~s---~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l  138 (432)
                      +..|.+.+|++++   ..+      .++..+++.++..+++++.|+++||+|||++++++.++..++.++.+++++++.+
T Consensus       110 ~~~~~i~~e~~l~c~~~~~------~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~  183 (505)
T TIGR00898       110 TFSSTIVTEWDLVCEDAWK------VDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVF  183 (505)
T ss_pred             cccccEEEEecceechHHH------HHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHH
Confidence            5567888999998   666      9999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCcCCCcccccccccCccchH
Q 013991          139 VLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFL  217 (432)
Q Consensus       139 ~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~  217 (432)
                      ++.|++.|++.+...+. .+++.|++|+++|+++.++.+.+..+|.+++|.+++.+.+                   ||.
T Consensus       184 ~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-------------------wr~  244 (505)
T TIGR00898       184 LVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD-------------------WRW  244 (505)
T ss_pred             HHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH-------------------HHH
Confidence            99999999998887775 9999999999999999999999999999999998866542                   555


Q ss_pred             HHHHHHHHHHHHHHHHhhcccccCCCCCCCcchhhhH--HHhhhhh---------h---hhhhhhccCCCCccccccchh
Q 013991          218 PCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSY--DALESAS---------A---EVKEEEGREATPKKSLLKNWP  283 (432)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~--~~~~~~~---------~---~~~~~~~~~~~~~~~~~~~~~  283 (432)
                      .+.+.++..++..+..+++||++++...+.+.++...  ++..+..         .   +.++.+++++...++++++|.
T Consensus       245 ~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  324 (505)
T TIGR00898       245 LQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPN  324 (505)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChH
Confidence            5577777766666666789999876543333222111  0000000         0   000001112245678888888


Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhChhHHHHHHHHH
Q 013991          284 LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVL  363 (432)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  363 (432)
                      ++...+...+..+.........+.+...      ++.+..   ......++..+++. ++.+++.||++||+.+.++.++
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~---~~~~~~~~~~i~~~-~~~~~l~dr~grr~~~~~~~~~  394 (505)
T TIGR00898       325 LRKTTLCLMMLWFTTAFSYYGLVLDLGN------LGGNIY---LDLFISGLVELPAK-LITLLLIDRLGRRYTMAASLLL  394 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccc------cCCChH---HHHHHHHHHHHHHH-HHHHHHHHHhCCHHHHHHHHHH
Confidence            8776655544433322222222222221      344432   23334455566665 5788999999999999988888


Q ss_pred             HHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHHHH
Q 013991          364 TIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWFV  427 (432)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~  427 (432)
                      .+++++++.+.....   . .......++.+++....++..+.+..|..|++.|+++.|.....
T Consensus       395 ~~~~~l~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~  454 (505)
T TIGR00898       395 AGVALLLLLFVPVDL---Y-FLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTM  454 (505)
T ss_pred             HHHHHHHHHHcCCCc---h-HHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHH
Confidence            777766655543221   1 12223333444455666778889999999999999998887654

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.97  E-value=1.8e-27  Score=225.17  Aligned_cols=327  Identities=15%  Similarity=0.142  Sum_probs=235.7

Q ss_pred             HHHHHHHHHhhccccchhhhHH-HHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHH
Q 013991           44 FSIWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV  122 (432)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~  122 (432)
                      ..+....++.........|.++ ++.+++|.+..+      .|+..+...++..+.+++.|+++||+|||+++..+.++.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~   86 (400)
T PRK11646         13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVM------VGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMR   86 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHH------HHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHH
Confidence            3445666667777777778876 567899999999      999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCcCC
Q 013991          123 VIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYP  201 (432)
Q Consensus       123 ~~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~  201 (432)
                      .++.+++.++++++.+++.|+++|++.+...+. .+++.|.+|+|+|++++++.+...++|..+||.+++++.+      
T Consensus        87 ~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~------  160 (400)
T PRK11646         87 AAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQ------  160 (400)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence            999999999999999999999999988877776 8999999999999999999999999999999999999873      


Q ss_pred             CcccccccccCccchHHHHHHHHHHHHHH-HHHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhccCCCCcccccc
Q 013991          202 NLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLK  280 (432)
Q Consensus       202 ~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (432)
                        +|         |+..+.+.++..++.. +..+..||.++.   +.+ .+                   .....++.++
T Consensus       161 --~g---------~~~~f~~~~~~~~~~~i~~~~~~~~~~~~---~~~-~~-------------------~~~~~~~~~~  206 (400)
T PRK11646        161 --YD---------FRLVCATGAVLFVLAAAFNAWLLPAYKLS---TVR-TP-------------------VREGMTRVLR  206 (400)
T ss_pred             --hh---------HHHHHHHHHHHHHHHHHHHHHhCCccccc---ccc-hh-------------------hHHHHHHHHc
Confidence              23         4444466555544432 333445542111   000 00                   0012445677


Q ss_pred             chhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhChhHHHHHH
Q 013991          281 NWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIA  360 (432)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  360 (432)
                      +++++...+..+...........+.|.|.++.      +.++.+.+.+.+..++....+..+..++..||.+.++....+
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~------~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  280 (400)
T PRK11646        207 DKRFVTYVLTLTGYYMLAVQVMLMLPIMVNDI------AGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAG  280 (400)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHhhhhhHHhh------cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHH
Confidence            77776655544444433333445677777653      346778888888877776666555666666777766666666


Q ss_pred             HHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHHHHh
Q 013991          361 GVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWFVK  428 (432)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~~  428 (432)
                      ..+..++...++......      ...+...+.+.+.....|...++..+.+|+++||++.|.+.+..
T Consensus       281 ~~~~~~~~~~l~~~~~~~------~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~  342 (400)
T PRK11646        281 LLIMSLSMFPIGMVSNLQ------QLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGL  342 (400)
T ss_pred             HHHHHHHHHHHHHhhhHH------HHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHH
Confidence            666666655554333211      12222333444555667888899999999999999999887654

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.96  E-value=2e-27  Score=226.44  Aligned_cols=340  Identities=19%  Similarity=0.286  Sum_probs=235.4

Q ss_pred             hhHHHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHH
Q 013991           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (432)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~  120 (432)
                      +....+++..++..+......+.+|.+.+++|.+..+. ...+.|++.+++.++..+++++.|+++||+|||+++..+.+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~   92 (408)
T PRK09874         14 RNLTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSA-LNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSAL   92 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchh-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHH
Confidence            34556677888888888889999999999999887541 01225889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHhhhccchhhHHhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCcC
Q 013991          121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY  200 (432)
Q Consensus       121 ~~~~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~  200 (432)
                      +.+++.+++..+++++.+++.|++.|++.+.......++.|.+|+++|++++++.+....+|..++|.+++.+.+     
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~-----  167 (408)
T PRK09874         93 GMGIVMVLMGLAQNIWQFLILRALLGLLGGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLAD-----  167 (408)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence            999999999999999999999999999766544447888999999999999999999999999999999999987     


Q ss_pred             CCcccccccccCccchHHHHHHHHHHHHHH-HHHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhccCCCCccccc
Q 013991          201 PNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLL  279 (432)
Q Consensus       201 ~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (432)
                        .+         +|+..+.+.++..++.. +..+++||+++..++++ +.+ .                   ....+.+
T Consensus       168 --~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~-------------------~~~~~~~  215 (408)
T PRK09874        168 --SY---------GLRPVFFITASVLFLCFLVTLFCIRENFQPVSKKE-MLH-M-------------------REVVTSL  215 (408)
T ss_pred             --Hh---------CHHHHHHHHHHHHHHHHHHHHHHhccCcccccchh-hhH-H-------------------HHHHHhC
Confidence              33         44544466665555433 33455666432211100 000 0                   0112234


Q ss_pred             cchhHHHHH-HHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhChhHHHH
Q 013991          280 KNWPLMSSI-IVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVAR  358 (432)
Q Consensus       280 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  358 (432)
                      ++++++... ...............+++.|..+...  +.+......+.+....+++..++. +..+++.||+++++.+.
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~l~~~~~~-~~~g~l~dr~g~~~~~~  292 (408)
T PRK09874        216 KNPKLVLSLFVTTLIIQVATGSIAPILTLYVRELAG--NVSNIAFISGMIASVPGVAALLSA-PRLGKLGDRIGPEKILI  292 (408)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhccccchhHH
Confidence            555544422 22333333334445566666554210  001011234555666667777776 57899999999999988


Q ss_pred             HHHHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHHHH
Q 013991          359 IAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWFV  427 (432)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~  427 (432)
                      .+.....+..+........      ....+...+.+++.+...|...+...+..|++.+|+..+.+...
T Consensus       293 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  355 (408)
T PRK09874        293 TALIFSVLLLIPMSFVQTP------LQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSF  355 (408)
T ss_pred             HHHHHHHHHHHHHHHhccH------HHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHH
Confidence            8877666555544333211      12334445556677777888888888999999999998877654

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.96  E-value=1.2e-29  Score=228.18  Aligned_cols=351  Identities=17%  Similarity=0.097  Sum_probs=242.8

Q ss_pred             CCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHH
Q 013991           36 SGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVI  115 (432)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l  115 (432)
                      .+.+++.+..+++..+++.++.+.+....+.+++.+|++++.      .|++.+.+.+.+.+++|++|+++|||+||+++
T Consensus        28 ~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~------~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~  101 (493)
T KOG1330|consen   28 MKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSE------LGLLQTVFIVVFMIASPLFGYLADRYNRKRVI  101 (493)
T ss_pred             cccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchh------ccchhHHHHHHHHHHHHHHHHHHhhcCcceEE
Confidence            445567788899999999999999999999999999999999      99999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhc
Q 013991          116 IMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (432)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  194 (432)
                      .+|..++.++.++++++..+|++.++|.+.|+|.+.+.++ +++++|.+|.++|++.+++++.+..+|..+|.+.+..+.
T Consensus       102 ~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va  181 (493)
T KOG1330|consen  102 AVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVA  181 (493)
T ss_pred             eeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeec
Confidence            9999999999999999999999999999999999999886 999999999999999999999999999999999999998


Q ss_pred             ccCCcCCCccc-ccccccCccchHHHHHHHHHHHH-HHHHHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhccCC
Q 013991          195 QPAEKYPNLFS-SESLFGKFPYFLPCLCISLFAFG-VTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREA  272 (432)
Q Consensus       195 ~~~~~~~~~~g-w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (432)
                      +       ..+ ||+.|         ...+++.++ .++..++.+|+.+..+++.+.+...           ........
T Consensus       182 ~-------~~~~Wr~af---------~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~~~-----------~~~~ts~~  234 (493)
T KOG1330|consen  182 S-------LTFWWRWAF---------RGSAVLGVIVGLLVFLFVREPERGARDEVDGENKM-----------VKPFTSVW  234 (493)
T ss_pred             c-------CccceEEEE---------EeehHHHHHHHHHHHhhccCcccccccccccCCcC-----------CCCccchH
Confidence            7       333 44444         445555555 4445566777655433222211100           00001112


Q ss_pred             CCccccccchhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhC
Q 013991          273 TPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG  352 (432)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~  352 (432)
                      ++.+.+.|++.+....+.+....+...++.-+.|.+.+..+..  .|++..+.-.+..+...++.+|. +.++.++||+.
T Consensus       235 kDl~~l~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~--~~~~~~~~~ifg~vt~~~G~lGv-l~Ggiisd~~~  311 (493)
T KOG1330|consen  235 KDLKVLAKIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYEL--IGFDHNATLIFGGVTCAGGSLGV-LFGGIISDKLS  311 (493)
T ss_pred             HHHHHHHccCceeeehHHHHHHHHhccccchhhhhHHHHHHHH--hCCccccchhhhhHHHhhchhhh-eehHHHHHHHH
Confidence            2334455556666666666666666666666666655443322  34566666666666667777776 57788888742


Q ss_pred             ----hhHHHH-------HHHHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHH-HHHHHHhccccccchhhh
Q 013991          353 ----PIMVAR-------IAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIIT-GLFILQNRAVVRVLTYTL  420 (432)
Q Consensus       353 ----~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~g~~  420 (432)
                          +.....       .+..+++..+.+.+......-     ......++.+.......+ ...-+..+++|++.|.++
T Consensus       312 ~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~-----~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a  386 (493)
T KOG1330|consen  312 RIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSM-----IFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTA  386 (493)
T ss_pred             HhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHH-----HHHHHHHHHHHHHHhcccccccceeeEecCcccccHH
Confidence                211112       222222333333332222121     111122222222222222 233456788999999999


Q ss_pred             hhHHHHH
Q 013991          421 SCHFWFV  427 (432)
Q Consensus       421 ~~~~~~~  427 (432)
                      ++.-...
T Consensus       387 ~a~~~~~  393 (493)
T KOG1330|consen  387 YALDTVF  393 (493)
T ss_pred             HHHHHHH
Confidence            8876543

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.96  E-value=2e-27  Score=228.39  Aligned_cols=353  Identities=13%  Similarity=0.038  Sum_probs=237.6

Q ss_pred             chhHHHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHH
Q 013991           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (432)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~  119 (432)
                      |..+....+...........+....|.+.+++|.+.++      .+++.+.+.++..++.++.|+++||+|||++++.+.
T Consensus        18 w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~------~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~   91 (455)
T TIGR00892        18 WVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSE------TAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGG   91 (455)
T ss_pred             hHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhH------HHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhH
Confidence            43444444444444444456777889999999999999      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhHHHHHH-HHHHHhhhccchhh-HHhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccC
Q 013991          120 ASVVIFNTLFGLSVNFWMAVL-TRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (432)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~l~~-~r~~~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  197 (432)
                      ++..+++++++++++++.+++ .|++.|++.+...+ ..+++.++++ ++|+++.++.+.+..+|..++|.+++.+.+  
T Consensus        92 ~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~--  168 (455)
T TIGR00892        92 LLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFE--  168 (455)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHH--
Confidence            999999999999999998875 56899998876544 4778888885 789999999999999999999999999987  


Q ss_pred             CcCCCcccccccccCccchHHHHHHHHHHHHHHHHHhhc-ccccCCCCCCCc-chhhhHHHhhhhhhhhhhhhccCCCCc
Q 013991          198 EKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL-PETLHRHNDDDD-SCDVSYDALESASAEVKEEEGREATPK  275 (432)
Q Consensus       198 ~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (432)
                                    .++|+.++.+.+++.++..+..+++ ++.+.++..+.+ +++...+...+..+.....++..+...
T Consensus       169 --------------~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (455)
T TIGR00892       169 --------------SFGWRGSFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSKEGLPPDGSTKKLSKKSTAEKINRFLD  234 (455)
T ss_pred             --------------HhChHHHHHHHHHHHHHHHHHHHHhCCCCcccccccccccccCCCCCccccccccchhhhhhhhcc
Confidence                          3345555577766655443333333 322111000000 000000000000000000000011112


Q ss_pred             cccccchhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHH--hCh
Q 013991          276 KSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI--LGP  353 (432)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~--~~~  353 (432)
                      .+++++|+++......++..........+++.|..+      .|++..+++.+.++.+++.++++ ++.+++.||  .++
T Consensus       235 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~------~g~s~~~~g~~~~~~~~~~~~~~-~~~g~l~d~~~~~~  307 (455)
T TIGR00892       235 FSLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKD------KGVDEYEAAFLLSIIGFVDIFAR-PSCGLIAGLKWIRP  307 (455)
T ss_pred             hHHhcCchHHHHHHHHHHHHHHccchHHHHHHHHHH------cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHhcccccCH
Confidence            357788888877777776666666666777877754      48899999999999999998887 588888886  333


Q ss_pred             hHHHHHHH--HHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHHHHh
Q 013991          354 IMVARIAG--VLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWFVK  428 (432)
Q Consensus       354 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~~  428 (432)
                      ++...++.  ....+..++......      ...+.+..++.+++.+...+...+++.+.+|+++++++.|.+....
T Consensus       308 ~~~~~~~~~~~~~~l~~ll~~~~~~------~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~  378 (455)
T TIGR00892       308 HVQYLFSFALLFNGLTHLLCALAGD------YTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVE  378 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhch------HHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHH
Confidence            43333322  222222222222211      1123444555566777777888899999999999999999887653

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.96  E-value=3.3e-27  Score=223.69  Aligned_cols=335  Identities=15%  Similarity=0.177  Sum_probs=235.5

Q ss_pred             CchhHHHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHH
Q 013991           39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (432)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~  118 (432)
                      +++.++......++..+......|.+|.+.+++|.++.+      .++..+.+.++..+++++.|+++||+|||+++.++
T Consensus         6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~   79 (394)
T PRK11652          6 NVNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGA------VQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVG   79 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHH
Confidence            456666666666677777788889999999999999999      99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccC
Q 013991          119 TASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (432)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  197 (432)
                      ..+..++.+++..+++++.+++.|++.|++.+...+. ..+..|.+++++|+++.+..+.+..+|..++|.+++.+.+  
T Consensus        80 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~--  157 (394)
T PRK11652         80 MSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTT--  157 (394)
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence            9999999999999999999999999999988877665 7888999999999999999999999999999999999987  


Q ss_pred             CcCCCcccccccccCccchHHHHHHHHHHHH-HHHHHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhccCCCCcc
Q 013991          198 EKYPNLFSSESLFGKFPYFLPCLCISLFAFG-VTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKK  276 (432)
Q Consensus       198 ~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (432)
                                    ..+|+.++.+.++..++ .++..++.||+++.++++.   + .                  ....+
T Consensus       158 --------------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~------------------~~~~~  201 (394)
T PRK11652        158 --------------LFGWRACYLFLLLLGAGVTFSMARWMPETRPADARRT---R-V------------------LASYR  201 (394)
T ss_pred             --------------ccChHHHHHHHHHHHHHHHHHHHHhCCccCccccchh---H-H------------------HHHHH
Confidence                          34455555666555444 3334456677543221110   0 0                  01234


Q ss_pred             ccccchhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhChhHH
Q 013991          277 SLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMV  356 (432)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  356 (432)
                      +.++++.++...+..+........+....+.+..+.     +|+++.+.+.......++..+++ .+.+++.||.+++..
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~g~-~~~~~l~~~~~~~~~  275 (394)
T PRK11652        202 TLLSNRRFNCYLLMLIGTLAGIAVFEACSGVLMGAV-----LGLSSMTVSILFILPIPAAFFGA-WFAGRPNKRFSTLMW  275 (394)
T ss_pred             HHHcChHHHHHHHHHHHHHHHHHHHHHhChHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            456677766554444443333334444455555544     68888899998888777777777 578888888873332


Q ss_pred             HHHHHHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHHHH
Q 013991          357 ARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWFV  427 (432)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~  427 (432)
                      ......................  .. ........+.+++.+...|.......+..| +++|++.+++...
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~  342 (394)
T PRK11652        276 QSVICCLLAGLLMWIPGWFGVM--NV-WTLLVPAALFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGL  342 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHhccc--cH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHH
Confidence            2222211111111111111011  11 123334455566667778888888888887 4678888777643

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.96  E-value=4.4e-27  Score=221.52  Aligned_cols=323  Identities=14%  Similarity=0.123  Sum_probs=226.0

Q ss_pred             HHHHHhhccccchhhhHHH-HHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHH-HHHHHHHH
Q 013991           48 IIVLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM-GTASVVIF  125 (432)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~-~~~~~~~~  125 (432)
                      +..++..++.....|.+|. +.+++|.+..+      .|++.+++.+...+.+++.|+++||+||||.++. +.++..++
T Consensus         4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~   77 (375)
T TIGR00899         4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAM------IGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALA   77 (375)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHcccCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence            4466777778888898885 56789999999      9999999999999999999999999999887654 56666777


Q ss_pred             HHHHhhhhhHHHHHHHHHHHhhhccchhhH-Hhhhhhhcccchhhhh--hhhHHHHHHHHHHHHHHHHhhhcccCCcCCC
Q 013991          126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALG--LSTVSTAWGIGLIIGPALGGFLAQPAEKYPN  202 (432)
Q Consensus       126 ~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~--~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~  202 (432)
                      .++++++++++.+++.|++.|.+.+...|. .++..|..|+++|++.  .+....+.++|.++||.+++.+.+       
T Consensus        78 ~~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~-------  150 (375)
T TIGR00899        78 CLLFAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLAL-------  150 (375)
T ss_pred             HHHHHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHH-------
Confidence            788889999999999999998876666665 7888898888777754  577788889999999999999987       


Q ss_pred             cccccccccCccchHHHHHHHHHHHHHHH-HHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhccCCCCccccccc
Q 013991          203 LFSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKN  281 (432)
Q Consensus       203 ~~gw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (432)
                               .++|+.++.+.++..++..+ ..+++||.+++.+++++                       ..+.++.+++
T Consensus       151 ---------~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~  198 (375)
T TIGR00899       151 ---------GFGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAPGALT-----------------------RLEVRGLLAS  198 (375)
T ss_pred             ---------hcccHHHHHHHHHHHHHHHHHHHHhCCCcccCcccccC-----------------------cchhhhhhcC
Confidence                     44556666777766555443 34557876543221100                       0011224556


Q ss_pred             hhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhChhHHHHHHH
Q 013991          282 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG  361 (432)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  361 (432)
                      ++++......++...........+|.|+.+.     +|.++.+.+.+.........++. ++.+++.||+++|+.+.++.
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~g~~~~~~~~~~~~~~-~~~g~l~~r~g~~~~~~~~~  272 (375)
T TIGR00899       199 RDTRLLFVACTLMWGCNILYIINMPLLIIHE-----LGLPDKLAGLMMGTAAGLEIPFM-LLAGYLIKRFGKRRLMLLAA  272 (375)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhhhHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHH-HhHHHHHHHhcchhHHHHHH
Confidence            6665554444444443444555667776554     68888889988877666666666 58899999999999887766


Q ss_pred             HHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHHHHh
Q 013991          362 VLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWFVK  428 (432)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~~  428 (432)
                      ....+.+..+.....     .+ .......+.+++.+...+.......+..|++ ++++.+.++...
T Consensus       273 ~~~~~~~~~~~~~~~-----~~-~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  332 (375)
T TIGR00899       273 LAGVAFYTGLAADNS-----LW-ALLMLQLLNAIFIGILAGIGMLYFQDLMPGR-AGAATTLYTNTG  332 (375)
T ss_pred             HHHHHHHHHHHHHHH-----HH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCcch-hhHHHHHHHHHH
Confidence            654444433322211     11 2223334445555566677777888887764 568888876543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.96  E-value=1e-27  Score=231.99  Aligned_cols=283  Identities=13%  Similarity=0.139  Sum_probs=214.1

Q ss_pred             chhHHHHHHHHHHhhccccchhhhHHHHHH----------------------HhcCCccccchhhhhhHHHHHHhHHHHH
Q 013991           40 ITELFSIWIIVLCTALPISSLFPFLYFMIK----------------------DFQIAKREEDIGSYAGYVGSSFMFGRAL   97 (432)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~s~~~~~~~~~~~~~~s~~~~~~~~   97 (432)
                      +.....+++...+++.++...+...+.+.+                      |++.+..+      .|++.+.+.+++.+
T Consensus        18 ~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~g~~~s~~~~~~~~   91 (465)
T TIGR00894        18 LFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGAL------QGLILSSHFYGQII   91 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHH------hhHHHHHHHHHHHH
Confidence            334446666677777777766666665554                      67888887      99999999999999


Q ss_pred             HHHhhhhhhhccCChHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHhhhccchhhH-Hhhhhhhcccchhhhhhhh
Q 013991           98 TSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS--VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLST  174 (432)
Q Consensus        98 ~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~  174 (432)
                      ++++.|+++||+|||+++.++.++.+++.+++.++  .+++.+++.|+++|++.+...+. ..+++|++|+++|++++++
T Consensus        92 ~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  171 (465)
T TIGR00894        92 IQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGM  171 (465)
T ss_pred             HHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHH
Confidence            99999999999999999999999999988887554  45788999999999999988886 8999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhcccCCcCCCc-ccccccccCccchHHHHHHHHHHHHHHHHHh-hcccccCCCCCCCcchhh
Q 013991          175 VSTAWGIGLIIGPALGGFLAQPAEKYPNL-FSSESLFGKFPYFLPCLCISLFAFGVTIAAF-WLPETLHRHNDDDDSCDV  252 (432)
Q Consensus       175 ~~~~~~~g~~~g~~~~~~l~~~~~~~~~~-~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~  252 (432)
                      ...+..+|.+++|.+++.+.+       . .|||..         +++.++..++..+..+ +.+|+|+.++...++++ 
T Consensus       172 ~~~~~~~g~~i~~~l~~~l~~-------~~~gw~~~---------f~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-  234 (465)
T TIGR00894       172 STSGFQLGTFIFLPISGWLCE-------SWGGWPMI---------FYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEK-  234 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh-------ccCCCCee---------hhhhhHHHHHHHHHHHHHhcCCcccCCCCCHHHH-
Confidence            999999999999999999987       3 255444         4666666655444443 44555543222111111 


Q ss_pred             hHHHhhhhhhhhhhhhccCCCCccccccchhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHH
Q 013991          253 SYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAIT  332 (432)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~  332 (432)
                        +..++..+ .++.+.+.+..++++++++.++...+..+........+..++|.|+.+.     +|++..+.|...+..
T Consensus       235 --~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~-----~g~s~~~~g~~~~~~  306 (465)
T TIGR00894       235 --KYINSSLQ-GQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWV-----LRVSGKENGLLSSLP  306 (465)
T ss_pred             --HHHHhhcc-cccCCCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCcChHHhHHHHHHH
Confidence              11111000 0000111234577889999999998888888888888888999998775     688999999999998


Q ss_pred             HHHHHHHHHHhHHHHHHHhChh
Q 013991          333 GFSLLVFQLSLYPFLERILGPI  354 (432)
Q Consensus       333 ~~~~~~~~~~~~~~l~~~~~~~  354 (432)
                      .++..++. ++.+++.||..+|
T Consensus       307 ~~~~~i~~-~~~g~l~d~~~~~  327 (465)
T TIGR00894       307 YLFAWLCS-IFAGYLADFLKSS  327 (465)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHc
Confidence            99998887 5899999987543

>TIGR00897 2A0118 polyol permease family

Probab=99.96  E-value=7.6e-27  Score=221.49  Aligned_cols=340  Identities=12%  Similarity=0.116  Sum_probs=230.2

Q ss_pred             hhHHHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHH
Q 013991           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (432)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~  120 (432)
                      |.+....++.++.........+.++.+.+++|.++.+      .|++.+.+.++..+++++.|+++||+|||+++..+.+
T Consensus        13 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~   86 (402)
T TIGR00897        13 LNLLWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQ------SASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLL   86 (402)
T ss_pred             chhhHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHH------hHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            4566677777777777777777788788999999999      9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHh---h-hhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHH-HHHHHHHhhhc
Q 013991          121 SVVIFNTLFG---L-SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGL-IIGPALGGFLA  194 (432)
Q Consensus       121 ~~~~~~~~~~---~-~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~-~~g~~~~~~l~  194 (432)
                      +.+++.+++.   . .++++.+++.|++.|++.+...+. .+.+.|.+|+++|++++|+.+.+.++|. .++|.+++.+.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~  166 (402)
T TIGR00897        87 LWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAI  166 (402)
T ss_pred             HHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9988876553   3 357888999999999987766554 7788899999999999999999999997 68999999888


Q ss_pred             ccCCcCCCcccccccccCccchHHHHHHHHHHHHHHHHHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhccCCCC
Q 013991          195 QPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATP  274 (432)
Q Consensus       195 ~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (432)
                      +       .+||+..+    |+..+..    .+..++..+..++.++.++++ ++.+ . +              +....
T Consensus       167 ~-------~~g~~~~~----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~-~-~--------------~~~~~  214 (402)
T TIGR00897       167 P-------AFGEMNTL----WSALAFV----LTGGVIALFSNKDIFTPQHMQ-TREK-F-S--------------ELGKA  214 (402)
T ss_pred             c-------ccchHHHH----HHHHHHH----HHHHHHHHhccCCCCCccccc-CCcc-h-h--------------hHHHH
Confidence            7       45543322    3322211    111222233344332111110 0000 0 0              00112


Q ss_pred             ccccccchhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhChh
Q 013991          275 KKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPI  354 (432)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~  354 (432)
                      .+.++|+|+++...+..++......+...+.|.|.++      +|++..+.+.+.+...++..+++ +..+++.||+++|
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~------~g~s~~~~~~~~~~~~~~~~ig~-~~~g~l~dr~~~~  287 (402)
T TIGR00897       215 ATILFTNPNVLLGGMVRIINTIGLFGFAVFLPMFVAE------LGFSTSEWLQIWGTFFFTNIVFN-VIFGIVGDKLGWM  287 (402)
T ss_pred             HHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCChhHHHHHHHHHHHHHHHHH-HHHHHHHHhhcch
Confidence            3457888988887777777666777778888988754      58889999998888889999998 5889999999988


Q ss_pred             HHHH-HHHHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHHHHh
Q 013991          355 MVAR-IAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWFVK  428 (432)
Q Consensus       355 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~~  428 (432)
                      +... .+.+...+....+........... ....+...+.+.+.....+. .....+. ++++||++.|+++...
T Consensus       288 ~~~~~~~~l~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~G~~~~~~~~~-~~~~~~~-~~~~~g~~~g~~~~~~  359 (402)
T TIGR00897       288 NTVRWFGGVGCGIFTLALYYIPQHFGHSF-AVALIIAIALGIFLAGYVPL-AAVFPTL-APKHKGAAMSVLNLSA  359 (402)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHccCCcH-HHHHHHHHHHHHHHHHHHHH-HHHHHhh-CcchhHHHHHHHHHHH
Confidence            7654 222222332222222211100011 11222333334444444443 4455565 4568999999887654

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.96  E-value=8.3e-27  Score=220.63  Aligned_cols=344  Identities=11%  Similarity=0.051  Sum_probs=246.5

Q ss_pred             hHHHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHH
Q 013991           42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (432)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~  121 (432)
                      .+..+....++.++..+...+..|.+++++|.++.+      .|++.+.+.+++.+++++.|++.||+|||+.+.++.++
T Consensus         4 ~~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~------~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l   77 (410)
T TIGR00885         4 PFALITSLFALWGFANDITNPMVPQFQQAFTLTAFQ------AALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFL   77 (410)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence            355666777778888888899999999999999999      99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhh---hhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccC
Q 013991          122 VVIFNTLFGL---SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (432)
Q Consensus       122 ~~~~~~~~~~---~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  197 (432)
                      .+++.+++..   .++++.+++.|++.|+|.|...+. .+++.+..|+++|++.+++.+...++|..+||.+++.+....
T Consensus        78 ~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~  157 (410)
T TIGR00885        78 YALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSN  157 (410)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999888654   358999999999999999988775 899999999999999999999999999999999999886421


Q ss_pred             CcC-CCccccccc---------ccCccchHHHHHHHHHHHHHHHHHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhh
Q 013991          198 EKY-PNLFSSESL---------FGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEE  267 (432)
Q Consensus       198 ~~~-~~~~gw~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (432)
                      .+. ....-+...         -...+|+.++.+.+++.++..+...+.++++.++++ +++ +                
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~~~-~~~-~----------------  219 (410)
T TIGR00885       158 LPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNHSD-AKQ-I----------------  219 (410)
T ss_pred             CccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc-ccc-c----------------
Confidence            000 000000000         002357887777777655543333222221111100 000 0                


Q ss_pred             hccCCCCccccccchhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHH
Q 013991          268 EGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFL  347 (432)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l  347 (432)
                        +.....++++|+|.++...+..+++...+.+..++++.|..+..    .+.+....+...+.......+++ ++++++
T Consensus       220 --~~~~~~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~----~~~~~~~a~~~~~~~~~~~~vGR-~~~~~l  292 (410)
T TIGR00885       220 --SFSASLSRLARIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRLI----PGMTAGFAANYNIGAMVIFFISR-FIGTWL  292 (410)
T ss_pred             --cchhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----CCCCHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence              00112345678888888777777777777777788888875421    23344444545555556677887 589999


Q ss_pred             HHHhChhHHHHHHHHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhH
Q 013991          348 ERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCH  423 (432)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~  423 (432)
                      .||+++++.+.+......+.+++........       ......+.+++.+..+|..++...+..+++.+..+.++
T Consensus       293 ~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~-------~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l  361 (410)
T TIGR00885       293 ISYLAAHKVLMAYAIIGMALCLGSIFAGGHV-------GLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGL  361 (410)
T ss_pred             HHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-------HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHH
Confidence            9999999998888777777666665433211       23334445567778889999999999988876544443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.96  E-value=2.5e-27  Score=220.89  Aligned_cols=345  Identities=19%  Similarity=0.190  Sum_probs=246.4

Q ss_pred             HHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHH
Q 013991           68 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGL---SVNFWMAVLTRFL  144 (432)
Q Consensus        68 ~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~---~~~~~~l~~~r~~  144 (432)
                      .+.+|.+.++.+.....+.+++++.+|.++|++..|+++||+|||..+.++.++..++.+++.+   .+++.+++++|++
T Consensus        46 ~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i  125 (485)
T KOG0569|consen   46 IERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLI  125 (485)
T ss_pred             HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            4556766666677788999999999999999999999999999999999999888888877766   4688999999999


Q ss_pred             HhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCcCCCcccccccccCccchHHHHHHH
Q 013991          145 LGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCIS  223 (432)
Q Consensus       145 ~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~  223 (432)
                      .|+..|..... ..++.|..|++.||......+.+..+|..+|..++.--         .+|.     ...|.+.+....
T Consensus       126 ~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~---------ilGt-----~~~W~~l~~~~~  191 (485)
T KOG0569|consen  126 VGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPS---------LLGT-----EDLWPYLLAFPL  191 (485)
T ss_pred             HHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHH---------hcCC-----CcchHHHHHHHH
Confidence            99988887665 99999999999999999999999999988886665321         2222     334666667777


Q ss_pred             HHHHHHHHHHhhcccccCCCCC-CCcchhhhH------------HHhhhhhhhhhhhh--ccCCCCccccccchhHHHHH
Q 013991          224 LFAFGVTIAAFWLPETLHRHND-DDDSCDVSY------------DALESASAEVKEEE--GREATPKKSLLKNWPLMSSI  288 (432)
Q Consensus       224 ~~~~~~~~~~~~~~e~~~~~~~-~~~~~~~~~------------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  288 (432)
                      +++++.++...++||+|++.-. +++++++.+            ++.++..++.++++  +++..+.+++++++..+...
T Consensus       192 i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~  271 (485)
T KOG0569|consen  192 IPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPL  271 (485)
T ss_pred             HHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHH
Confidence            7778888888999999998654 333333321            11111111111111  22556788999998777754


Q ss_pred             HHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhChhHHHHHHHHHHHHHH
Q 013991          289 IVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLL  368 (432)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  368 (432)
                      ...+...+.+ .+....+.+.+......+.|++..++-+.....++...+.+ +++.++.||.|||++++.+..++.+..
T Consensus       272 ~i~~~v~~~q-q~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t-~~~~~lid~~gRRpLll~~~~~~~~~~  349 (485)
T KOG0569|consen  272 LIGIVVSFAQ-QFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLST-LVSPFLIDRLGRRPLLLISLSLMAVAL  349 (485)
T ss_pred             HHHHHHHHHH-HhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence            4333333221 11112222222222333368999999999999999999998 599999999999999999988887776


Q ss_pred             HHhhHHHhhhhhH---H-HHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHHHHh
Q 013991          369 TSYPYIAMLSGFG---L-AFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWFVK  428 (432)
Q Consensus       369 ~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~~  428 (432)
                      +++..........   . +..+.........+..+..|..+.+.+|.+|++.|.++...-..++
T Consensus       350 ~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~  413 (485)
T KOG0569|consen  350 LLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVN  413 (485)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHH
Confidence            6655443333222   2 2223344444555667778999999999999999998877665543

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.96  E-value=9.7e-27  Score=219.24  Aligned_cols=324  Identities=13%  Similarity=0.088  Sum_probs=241.6

Q ss_pred             HHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHH----HHHH
Q 013991           44 FSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVI----IMGT  119 (432)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l----~~~~  119 (432)
                      ..+....+..........|.+|.+.+++|.|..+      +|++.+++.+...++++++|+++||+|||...    .++.
T Consensus         7 ~~l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~------ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~   80 (382)
T TIGR00902         7 RWLALGFFGYFCAYGIFLPFFPAWLKGIGLGEEM------IGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALAS   80 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            3355667777777888999999999999999999      99999999999999999999999999985433    2222


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCC
Q 013991          120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE  198 (432)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~  198 (432)
                      .+..+  ..+..+++++.+++.|+++|.+.+...|. .++..|.  +++|++..+......++|.+++|.+++.+.+   
T Consensus        81 ~l~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~---  153 (382)
T TIGR00902        81 AIFAA--AFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIG---  153 (382)
T ss_pred             HHHHH--HHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHH---
Confidence            22222  24446789999999999999877666665 6666553  5788999999999999999999999999998   


Q ss_pred             cCCCcccccccccCccchHHHHHHHHHHHHHHHHHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhccCCCCcccc
Q 013991          199 KYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSL  278 (432)
Q Consensus       199 ~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (432)
                          .+|||         ..+.+.....++.+ ..+.++|+++++++++++                  +.+..+..+++
T Consensus       154 ----~~g~~---------~~f~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~  201 (382)
T TIGR00902       154 ----MFDEQ---------NILAILTAGLAFML-IGFLIKPTIPPKDAIPED------------------ESQGDSAFIAL  201 (382)
T ss_pred             ----HcChh---------HHHHHHHHHHHHHH-HHHHcCCCCCCCcccccc------------------ccccchhHHHH
Confidence                44554         44455443322222 223334332111111000                  00111235678


Q ss_pred             ccchhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhChhHHHH
Q 013991          279 LKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVAR  358 (432)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  358 (432)
                      +|+|+++...+..++.......+..+.|.|.++      .|.++.++|.+.+...+..++.. ...+++.||++.++.+.
T Consensus       202 l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~------~g~s~~~~g~l~~~~~~~~i~~~-~~~~~l~~r~g~~~~l~  274 (382)
T TIGR00902       202 LKNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQA------AGISASATGLLWGIGVLAEIIIF-AFSNKLFQNCSARDLLL  274 (382)
T ss_pred             HcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------CCCCHhHHHHHHHHHHHHHHHHH-HHhHHHHhhCCHHHHHH
Confidence            899999988888888888888888899988865      58999999999998777777775 68899999999999999


Q ss_pred             HHHHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHHH
Q 013991          359 IAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWF  426 (432)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~  426 (432)
                      ++.+...+....+++..+..      .+.....+.++..+...+....++++. |++++++..+.++.
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~------~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~  335 (382)
T TIGR00902       275 ISAIACVGRWAIIGAIEAFP------LIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNA  335 (382)
T ss_pred             HHHHHHHHHHHHHHhHhhHH------HHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHH
Confidence            99988888877776544332      455567777888888888889999988 99999988888753

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.96  E-value=8.9e-27  Score=220.64  Aligned_cols=283  Identities=20%  Similarity=0.218  Sum_probs=214.9

Q ss_pred             HHHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHH
Q 013991           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV  122 (432)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~  122 (432)
                      +.......+....+.....+.+|.+.+++|.++.+      .++..+.+.++..+++++.|+++||+|||+.+..+.++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~   78 (392)
T PRK10473          5 LLCSFALVLLYPAGIDMYLVGLPRIAADLNASEAQ------LHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALF   78 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHH
Confidence            33455566666777777788999999999999998      999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCcCC
Q 013991          123 VIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYP  201 (432)
Q Consensus       123 ~~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~  201 (432)
                      .++.+++..+++++.+++.|+++|++.+...+. .+++.|.+|+++|++.+++.+....+|..++|.+++.+.+      
T Consensus        79 ~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~------  152 (392)
T PRK10473         79 IIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIML------  152 (392)
T ss_pred             HHHHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------
Confidence            999999999999999999999999998877665 9999999999999999999999999999999999998876      


Q ss_pred             CcccccccccCccchHHHHHHHHHHHHH-HHHHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhccCCCCcccccc
Q 013991          202 NLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLK  280 (432)
Q Consensus       202 ~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (432)
                                ..+|+..+.+.++..++. ++..+.+||+++.+++++  .+.                   .+..++.++
T Consensus       153 ----------~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~-------------------~~~~~~~~~  201 (392)
T PRK10473        153 ----------KFPWQSLFYTMAAMGILVLLLSLFILKETRPARAPAA--SSK-------------------PRENSESLL  201 (392)
T ss_pred             ----------CcChHHHHHHHHHHHHHHHHHHHHHcCCCCCcccCCc--cch-------------------HHHHHHHHh
Confidence                      334455446665555443 334456677643321110  000                   011224466


Q ss_pred             chhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhChhHHHHHH
Q 013991          281 NWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIA  360 (432)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  360 (432)
                      +++++...+...+.......+..+.|.+..+.     +|+++.+.+.+....+++..++. ++.+++.||+++|+.+..+
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~i~~~-~~~~~l~~r~g~~~~~~~~  275 (392)
T PRK10473        202 NRFFLSRLVITTLSVTVILTFVNTSPVLLMEQ-----MGFSRGEYAIIMALTAGVSMTVS-FSTPFALGIFKPRTLMLTS  275 (392)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCHHHHHHHH
Confidence            67665544444333333334444555555443     68888899999999999998888 5889999999999998888


Q ss_pred             HHHHHHHHHHhhHH
Q 013991          361 GVLTIPLLTSYPYI  374 (432)
Q Consensus       361 ~~~~~~~~~~~~~~  374 (432)
                      ..+..++...+...
T Consensus       276 ~~~~~~~~~~~~~~  289 (392)
T PRK10473        276 QVLFLAAGITLALS  289 (392)
T ss_pred             HHHHHHHHHHHHHH
Confidence            77776666555443

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.96  E-value=9.8e-28  Score=230.08  Aligned_cols=354  Identities=12%  Similarity=0.011  Sum_probs=229.1

Q ss_pred             hHHHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHH
Q 013991           42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (432)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~  121 (432)
                      .++...+................|.+.+ +|.++++      .+++.+++.++..+++++.|+++||+|||+++.++.++
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~------~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~  100 (438)
T TIGR00712        28 VFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGE------LGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL  100 (438)
T ss_pred             HHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhH------hHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHH
Confidence            3444455556666666666677777765 6999998      99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhh----hhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhccc
Q 013991          122 VVIFNTLFGLS----VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP  196 (432)
Q Consensus       122 ~~~~~~~~~~~----~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  196 (432)
                      .+++.++++..    ++++.+.+.|++.|++.+...+. ...+.|++|+++|++++++.+.+.++|..++|.+.+.+.+.
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~  180 (438)
T TIGR00712       101 SAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAW  180 (438)
T ss_pred             HHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence            99988887664    46778889999999998877664 88899999999999999999999999999998887765430


Q ss_pred             CCcCCCcccccccccCccchHHHHHHHHHHHH-HHHHHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhccCC-CC
Q 013991          197 AEKYPNLFSSESLFGKFPYFLPCLCISLFAFG-VTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREA-TP  274 (432)
Q Consensus       197 ~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  274 (432)
                                     ..+|+..+++.++..++ .++..+++||+++..+.++.++... +..++..+ +.+.+.+.+ ..
T Consensus       181 ---------------~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~  243 (438)
T TIGR00712       181 ---------------FNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEYRN-DYPDDYNE-KAEQELTAKEIF  243 (438)
T ss_pred             ---------------hhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhccc-cccccccc-ccccccchHHHH
Confidence                           22455555776666555 3444566777654321111000000 00000000 000000000 01


Q ss_pred             ccccccchhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhChh
Q 013991          275 KKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPI  354 (432)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~  354 (432)
                      .+..+|++.++...+...+......+...+.|.|+++.     .|+++.+++....+..+.+++++ ++.+++.||++++
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-----~g~s~~~~~~~~~~~~~~~~ig~-~~~g~l~dr~~~~  317 (438)
T TIGR00712       244 MQYVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEV-----KHFALDKSSWAYFLYEYAGIPGT-LLCGWMSDKVFKG  317 (438)
T ss_pred             HHHHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHc-----cCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHhccC
Confidence            12367888888877766666666667778899998875     68899999999999888888888 5899999998543


Q ss_pred             HHHHHHHHHHHHHHH-HhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHHHH
Q 013991          355 MVARIAGVLTIPLLT-SYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWFV  427 (432)
Q Consensus       355 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~  427 (432)
                      +....+......... ...+...... ..+. .....+..+....+..........+..|++.||++.|.++..
T Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~  389 (438)
T TIGR00712       318 NRGATGVFFMTLVTIAVIVYWMNPAG-NPLV-DMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLF  389 (438)
T ss_pred             cccHHHHHHHHHHHHHHHHHHhcCCC-chHH-HHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchH
Confidence            322222222111111 1111111000 0111 111222222222222222234567889999999999988765

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.96  E-value=5.7e-28  Score=215.87  Aligned_cols=292  Identities=14%  Similarity=0.131  Sum_probs=240.7

Q ss_pred             CCCchhHHHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHH
Q 013991           37 GLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII  116 (432)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~  116 (432)
                      +.++++++.-.+...+......+..+..+.+.+++|+|++|      .+++.++..+...+..++.|.+.||+|.|++..
T Consensus        10 ~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q------~~ll~aiPil~GallRl~~g~l~drfGgR~~~~   83 (417)
T COG2223          10 RIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQ------KGLLVAIPILVGALLRLPYGFLTDRFGGRKWTI   83 (417)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHH------HHHHHHHHHHHhHHHHHHHHhhhcccCchHHHH
Confidence            34557777778888888888899999999999999999999      999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhh---HHHHHHHHHHHhhhccchhhHHhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhh
Q 013991          117 MGTASVVIFNTLFGLSVN---FWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL  193 (432)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~---~~~l~~~r~~~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  193 (432)
                      ++.++..+-++..+++.+   ++++++.+++.|++++.+....+++++++|||++|.++|+.. ..++|..+...++..+
T Consensus        84 ~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v  162 (417)
T COG2223          84 LSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLV  162 (417)
T ss_pred             HHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHH
Confidence            999999999999998764   459999999999999999888999999999999999999999 8889998888888888


Q ss_pred             cccCCcCCCcccccccccCccchHHHHHHHHHHHH-HHHHHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhccCC
Q 013991          194 AQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFG-VTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREA  272 (432)
Q Consensus       194 ~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (432)
                      ..       .+|+.      .|+....+.....++ .++.++.+.|.+..+...++..                     +
T Consensus       163 ~~-------~~g~~------~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~---------------------~  208 (417)
T COG2223         163 AV-------AFGFL------AWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQL---------------------P  208 (417)
T ss_pred             HH-------HHhhH------HHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccc---------------------h
Confidence            87       34410      144444444444444 4444555665554322211110                     0


Q ss_pred             CCccccccchhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhC
Q 013991          273 TPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG  352 (432)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~  352 (432)
                      ...+.+++++..|...+.|+.....+.++..++|.|++++     ++.++.++|.........+.+.+ +.+|+++||+|
T Consensus       209 ~~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~-----fg~~~~~Ag~~a~~f~~~g~l~R-p~GG~LsDR~G  282 (417)
T COG2223         209 AQLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQ-----FGLSPVTAGLIAFLFPLIGALAR-PLGGWLSDRIG  282 (417)
T ss_pred             hHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCChhhHHHHHHHHHHHHHHHH-hccchhhhhcc
Confidence            2355678899999999999999999999999999999998     89999999999999999999998 79999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHhhHHH
Q 013991          353 PIMVARIAGVLTIPLLTSYPYIA  375 (432)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~  375 (432)
                      .+|.+......+.++.....+..
T Consensus       283 g~rv~~~~f~~~~~~~~~l~~~~  305 (417)
T COG2223         283 GRRVTLAVFVGMALAAALLSLFL  305 (417)
T ss_pred             chhHHHHHHHHHHHHHHHHHccc
Confidence            99998888888777766655443

>PRK10054 putative transporter; Provisional

Probab=99.96  E-value=6.2e-27  Score=221.12  Aligned_cols=331  Identities=14%  Similarity=0.164  Sum_probs=241.1

Q ss_pred             hhHHHHHHHHHHhhccccchhhhHH-HHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHH
Q 013991           41 TELFSIWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (432)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~  119 (432)
                      |.++.+.+..++...+.....+.+| ++.+++|.+..+      .|++.+.+.++..+++++.|+++||+|||++++++.
T Consensus         7 ~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~------~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~   80 (395)
T PRK10054          7 RSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDL------IGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAI   80 (395)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHH
Confidence            4466666778888888888888887 455789999999      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCC
Q 013991          120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE  198 (432)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~  198 (432)
                      ++..++.++.+++++++.+++.|.+.|.+.+...+. .++..|..|+++|++++++.+...++|.++||.+++++.+   
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~---  157 (395)
T PRK10054         81 TAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM---  157 (395)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence            999999999999999999999998888776666665 8899999999999999999999999999999999998864   


Q ss_pred             cCCCcccccccccCccchHHHHHHHHHHHHHH-HHHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhccCCCCccc
Q 013991          199 KYPNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKS  277 (432)
Q Consensus       199 ~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (432)
                           .||+         .++...++..++.+ +..+.+||+++++++++   +.                   ....++
T Consensus       158 -----~g~~---------~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~---~~-------------------~~~~~~  201 (395)
T PRK10054        158 -----QSIN---------LPFWLAAICSAFPLVFIQIWVQRSEKAIATET---GS-------------------VWSPSV  201 (395)
T ss_pred             -----hccC---------cHHHHHHHHHHHHHHHHHHHHhccccccccch---hh-------------------hhhhhh
Confidence                 2444         44465555555443 33344565433211100   00                   011245


Q ss_pred             cccchhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhChhHHH
Q 013991          278 LLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVA  357 (432)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  357 (432)
                      .+|+|+++...+..++..+....+..+.+.|....   .+.+.+....+..+....+.....+ +..+++.||.++|+.+
T Consensus       202 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~l  277 (395)
T PRK10054        202 LLQDKALLWFTCSGFLASFVSGAFASCISQYVMVV---ADSDFAEKVVAVVLPVNAAMVVSLQ-YSVGRRLNAANIRPLM  277 (395)
T ss_pred             hccCceehHHHHHHHHHHHHHHHhhhhHHHHHHHh---cccchHHHHHHHHHHhhhhheeeeh-hHHHHHHccCCchhHH
Confidence            67888887777666665555555544555555332   1246677777888777777666665 4667788899999888


Q ss_pred             HHHHHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHH
Q 013991          358 RIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFW  425 (432)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~  425 (432)
                      ..+..+..++...+.....  +  . ....+...+.+.+.....|.....+.+..|++.++++.+...
T Consensus       278 ~~~~~~~~~~~~~~~~~~~--~--~-~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~  340 (395)
T PRK10054        278 TAGTLCFVIGLVGFIFSGN--S--L-LLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS  340 (395)
T ss_pred             HHHHHHHHHHHHHHHHcch--H--H-HHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH
Confidence            8887776666655543211  1  1 122334455566666667888889999999999998877543

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.96  E-value=9e-27  Score=217.10  Aligned_cols=306  Identities=23%  Similarity=0.327  Sum_probs=255.6

Q ss_pred             HHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHH
Q 013991           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (432)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~  124 (432)
                      .+....+...++.....+..|.+.+++|.+..+      .++..+...++..+++++.|+++||+|||+.+.++.++..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~   76 (352)
T cd06174           3 LLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQ------AGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFAL   76 (352)
T ss_pred             HHHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHH
Confidence            345567778888888999999999999999998      99999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCcCCCc
Q 013991          125 FNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNL  203 (432)
Q Consensus       125 ~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~  203 (432)
                      +.+.+.++++++.+++.|++.|++.+...+. .+++.|++|+|+|++.+++.+...++|..++|.+++.+.+        
T Consensus        77 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--------  148 (352)
T cd06174          77 GSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAE--------  148 (352)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHH--------
Confidence            9999999999999999999999998888776 9999999999999999999999999999999999999987        


Q ss_pred             ccccccccCccchHHHHHHHHHHHHHHHHHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhccCCCCccccccchh
Q 013991          204 FSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWP  283 (432)
Q Consensus       204 ~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (432)
                              ..+|+..+.+.++..++..+...+++                                            |.
T Consensus       149 --------~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------~~  176 (352)
T cd06174         149 --------SLGWRWLFLILAILGLLLALLLLFLL--------------------------------------------RL  176 (352)
T ss_pred             --------HhhHHHHHHHHHHHHHHHHHHHHHHH--------------------------------------------HH
Confidence                    33455555666666555444444443                                            34


Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhChhH-HHHHHHH
Q 013991          284 LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIM-VARIAGV  362 (432)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~  362 (432)
                      ++...+..++..........+.+.+..+.     +|.+..+.+.......++..++. ++.+++.||.++|+ .+..+..
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~  250 (352)
T cd06174         177 LLLLALAFFLLSFGYYGLLTYLPLYLQEV-----LGLSAAEAGLLLSLFGLGGILGA-LLGGLLSDRLGRRRLLLLIGLL  250 (352)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhHHHHHHHH
Confidence            45556666666777777777888887764     58899999999999999999998 58899999999999 8888888


Q ss_pred             HHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHHHHh
Q 013991          363 LTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWFVK  428 (432)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~~  428 (432)
                      +..++.........      .....+...+.+++.+...+....+..+..|+++|++..+......
T Consensus       251 ~~~i~~~~~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (352)
T cd06174         251 LAALGLLLLALAPS------LALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFG  310 (352)
T ss_pred             HHHHHHHHHHHhcc------HHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHH
Confidence            87777776655432      2235556667777888888999999999999999999999887654

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.96  E-value=4.3e-27  Score=222.92  Aligned_cols=333  Identities=14%  Similarity=0.086  Sum_probs=227.0

Q ss_pred             HHhhccccchhhhHHHHHHHhcC--CccccchhhhhhHHHH-----HHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHH
Q 013991           51 LCTALPISSLFPFLYFMIKDFQI--AKREEDIGSYAGYVGS-----SFMFGRALTSVFWGLVADRYGRKPVIIMGTASVV  123 (432)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~--s~~~~~~~~~~~~~~s-----~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~  123 (432)
                      +.+.++...+....+.+.+++..  ++++      .+...+     ...++..+++++.|+++||+|||+++.++.++..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~   76 (394)
T TIGR00883         3 AVEWFDFYLYGFAAVLVFHTFFPPSGDPL------VALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMG   76 (394)
T ss_pred             chhHHHHHHHHHHHHHHHHHhcCCCCChH------HHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHH
Confidence            34566677777777777777543  3333      344333     3344445789999999999999999999999999


Q ss_pred             HHHHHHhhhhhHH--------HHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhc
Q 013991          124 IFNTLFGLSVNFW--------MAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (432)
Q Consensus       124 ~~~~~~~~~~~~~--------~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  194 (432)
                      ++.++++++++++        .+++.|+++|++.+...+. .+++.|++|+++|++..+..+.+..+|.++++.++..+.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~  156 (394)
T TIGR00883        77 IGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLS  156 (394)
T ss_pred             HHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999988865        4889999999998887765 999999999999999999999999999999999887765


Q ss_pred             ccCCcCCCcccccccccCccchHHHHHHHHHHHHHHHHHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhccCCCC
Q 013991          195 QPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATP  274 (432)
Q Consensus       195 ~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (432)
                      ..       .+.... ..++|+.++.+.++..++..+.....||+++.++++++                   +++....
T Consensus       157 ~~-------~~~~~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~  209 (394)
T TIGR00883       157 YL-------LGDDAL-LEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEK-------------------HKKKRGP  209 (394)
T ss_pred             Hh-------cCHHHh-hccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhc-------------------cccccCC
Confidence            31       110000 14567777777666555544444455665432111000                   0011223


Q ss_pred             ccccccchh--HHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhC
Q 013991          275 KKSLLKNWP--LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG  352 (432)
Q Consensus       275 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~  352 (432)
                      .++.+++++  ++......++..........+.|.|.++.     +|.++.+.+.......+...++. ++.+++.||++
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~-~~~g~l~dr~g  283 (394)
T TIGR00883       210 IRETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQT-----LGLSANSALLVLMLSLILFFITI-PLSGALSDRIG  283 (394)
T ss_pred             HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCChhHHHHHHHHHHHHHHHHH-HHHHHHHHHhc
Confidence            344555544  55555555555566666677888888654     68888999999998888888887 58899999999


Q ss_pred             hhHHHHHHHHHHHHHH-HHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHH
Q 013991          353 PIMVARIAGVLTIPLL-TSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFW  425 (432)
Q Consensus       353 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~  425 (432)
                      +|+.+.....+..+.. ..........  . .........+.+++.+...+...+...|.+|++.|+++.+..+
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  354 (394)
T TIGR00883       284 RRPVLIIFTVLAALLAVPLLMALLDSG--S-FTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAY  354 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcCC--c-hHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehh
Confidence            9987765544333322 2221111111  1 1123333445555666777888999999999999999888743

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00901 2A0125 AmpG-related permease

Probab=99.96  E-value=3.6e-26  Score=213.66  Aligned_cols=331  Identities=11%  Similarity=0.158  Sum_probs=233.9

Q ss_pred             cccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhcc-----CChHH-HHHHHHHHHHHHHHH
Q 013991           56 PISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-----GRKPV-IIMGTASVVIFNTLF  129 (432)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-----Grr~~-l~~~~~~~~~~~~~~  129 (432)
                      ......+..|.+.+|+|.|.++      .|+.... .+...+ .+++|+++||+     ||||. ++.+.++.+++....
T Consensus         3 ~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l   74 (356)
T TIGR00901         3 PLGLVGNTLPYWLRSKNVSLKT------IGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLIL   74 (356)
T ss_pred             CchhHHhHHHHHHHHcCCCHHH------HHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHH
Confidence            3456678889999999999999      9988655 455554 99999999998     89887 466777777776666


Q ss_pred             hhh---hhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCcCCCccc
Q 013991          130 GLS---VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFS  205 (432)
Q Consensus       130 ~~~---~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~g  205 (432)
                      ++.   .+.+.+....++.+++.+...+. .+++.|++|+|+|+++.++...+.++|.++++.+++.+.+       .+|
T Consensus        75 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~-------~~g  147 (356)
T TIGR00901        75 SFLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLAS-------PEF  147 (356)
T ss_pred             HcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhh-------hcc
Confidence            666   46666777777888877777675 9999999999999999999999999999999999999887       333


Q ss_pred             ccccccCccchHHHHHHHHHHHHHHHHHh-hcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhccCCCCccccccchh-
Q 013991          206 SESLFGKFPYFLPCLCISLFAFGVTIAAF-WLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWP-  283 (432)
Q Consensus       206 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  283 (432)
                      ... +.+++|+.++.+.++..++..+..+ ..||+.+..+. ++  +.. ++              .....+++++++. 
T Consensus       148 ~~~-~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~~~~-~~--~~~-~~--------------~~~~~~~~~~~~~~  208 (356)
T TIGR00901       148 ANT-GLITLWGYIFFWTALLILPGLLVTLFLAKEPQEDASV-PK--PLT-QA--------------VLKPIREFFQRKNM  208 (356)
T ss_pred             ccc-ccccccHHHHHHHHHHHHHHHHHHHHhccCCCccccc-ch--hHH-HH--------------HHHHHHHHHHhcCc
Confidence            222 1256688888888877766555544 35664321111 00  000 00              0012334455554 


Q ss_pred             --HHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHH-HHHHHHHHhHHHHHHHhChhHHHHHH
Q 013991          284 --LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGF-SLLVFQLSLYPFLERILGPIMVARIA  360 (432)
Q Consensus       284 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~  360 (432)
                        ++...+..++..........+.|.|..+      +|+++.+.+.+....+. ..+++. ++++++.||+++|+.+..+
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~g~~~~~~g~~~~~~~~~~~~~g~-~~~g~l~~r~g~~~~l~~~  281 (356)
T TIGR00901       209 IQALLLLLLIVLYKLGDSAATVLTTLFLLD------MGFSKEEIALVAKINGLLGAILGG-LIGGIIMQPLNILYALLLF  281 (356)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHhHHHHHHHHHHHH-HHHHHHHhhhhHHHHHHHH
Confidence              5555555555666666777788888765      48899999988887774 455665 6899999999999988888


Q ss_pred             HHHHHHHHHHhhHHHhhhh-----hHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHHHH
Q 013991          361 GVLTIPLLTSYPYIAMLSG-----FGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWFV  427 (432)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~  427 (432)
                      .++..+....+.+......     ......+....++.+++.+...+...++..+.+|+++||+..|.+..+
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~  353 (356)
T TIGR00901       282 GIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSL  353 (356)
T ss_pred             HHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence            7776666554443321110     001123444455567777888999999999999999999999988764

>TIGR00896 CynX cyanate transporter

Probab=99.96  E-value=2.5e-26  Score=214.54  Aligned_cols=313  Identities=15%  Similarity=0.057  Sum_probs=226.9

Q ss_pred             ccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHhhhhh
Q 013991           55 LPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVN  134 (432)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~  134 (432)
                      .......+.+|.+.+++|.+..+      .++..+.+.++..+++++.|+++||+|||+++.++.++..++.+.+ .+++
T Consensus        14 ~~~~~~~~~lp~l~~~~~~s~~~------~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~   86 (355)
T TIGR00896        14 PALTSVGPLLPQIRSALGMSFSV------AGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPG   86 (355)
T ss_pred             CccccCcccHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hhcc
Confidence            34466788999999999999999      9999999999999999999999999999999999998888888877 7788


Q ss_pred             HHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCcCCCcccccccccCc
Q 013991          135 FWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKF  213 (432)
Q Consensus       135 ~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~  213 (432)
                      .+.+++.|++.|++.+...+. ..++.|.+| ++|++++++.+...++|..+++.+++.+.+       ..+       .
T Consensus        87 ~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~-------~~~-------~  151 (355)
T TIGR00896        87 TALLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQ-------HSG-------G  151 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhh-------h
Confidence            999999999999988876665 778888886 689999999999999999999999988876       111       1


Q ss_pred             cchHHHHHHHHHHHHHHHHHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhccCCCCccccccchhHHHHHHHHHH
Q 013991          214 PYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCV  293 (432)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (432)
                      +|+..+...++..++.  ...++|+.+++++++++                     ......++.+|+|.++...+..++
T Consensus       152 ~w~~~f~~~~~~~~~~--~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~  208 (355)
T TIGR00896       152 HWQQALAWWALPALLA--LLAWIPQVRRRVAANQT---------------------TTRLTPVRIWRSPLAWQVTVFFGL  208 (355)
T ss_pred             hHHHHHHHHHHHHHHH--HHHHhhhhccccCCCCC---------------------CCCCCCchhhcCHhHHHHHHHHHH
Confidence            2454445444333222  22334543322111000                     011234567788888776666666


Q ss_pred             HHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHh-ChhHHHHHHHHHHHHHHHHhh
Q 013991          294 FSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL-GPIMVARIAGVLTIPLLTSYP  372 (432)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~  372 (432)
                      ..........+.|.|+++      .|++..+.+...+...++.++++ ++.+++.||+ ++|+....+..+..++...+.
T Consensus       209 ~~~~~~~~~~~lp~~~~~------~g~~~~~~g~~~~~~~~~~i~~~-~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~  281 (355)
T TIGR00896       209 QSGLYYSLIGWLPAILIS------HGASAATAGSLLALMQLAQAASA-LLIPALARRVKDQRGIVAVLAVLQLVGLCGLL  281 (355)
T ss_pred             HHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHHHHHHH-HhHHHHHhhhccchHHHHHHHHHHHHHHHHHH
Confidence            666666777788888864      48899999999999999999998 5889999999 456666666666666655544


Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccc-cccchhhhhhHHHH
Q 013991          373 YIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAV-VRVLTYTLSCHFWF  426 (432)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~g~~~~~~~~  426 (432)
                      +.....   .  ..  ...+.+++.+..+|...+...+.. ++++++++.++.+.
T Consensus       282 ~~~~~~---~--~~--~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  329 (355)
T TIGR00896       282 FAPMHG---L--WA--WALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQS  329 (355)
T ss_pred             HhhhhH---H--HH--HHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            432211   1  11  233456666777777666665444 45667887777654

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.95  E-value=1.1e-25  Score=212.12  Aligned_cols=318  Identities=13%  Similarity=0.095  Sum_probs=226.7

Q ss_pred             HHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCCh----HHHHHHHHHHHHH
Q 013991           50 VLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRK----PVIIMGTASVVIF  125 (432)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr----~~l~~~~~~~~~~  125 (432)
                      .+......+...|.+|.+.+++|.|..+      +|++.+++.++..++++++|+++||+|||    +.+.+...+.  .
T Consensus        13 ~~~~~~~~g~~~p~l~~~l~~~g~s~~~------iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~   84 (382)
T PRK11128         13 YFGYFFAYGVFLPFWSVWLKGQGYTPET------IGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--A   84 (382)
T ss_pred             HHHHHHHHHHHhhhHHHHHHhcCCCHHH------HHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--H
Confidence            4445566678889999999999999999      99999999999999999999999999994    3333222222  2


Q ss_pred             HHHHhhhhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCcCCCcc
Q 013991          126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLF  204 (432)
Q Consensus       126 ~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~  204 (432)
                      ......++++|.+++.|++.|++.+...+. .+++.++  +++|++..+......++|.++||.+++++.+         
T Consensus        85 ~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~---------  153 (382)
T PRK11128         85 VAFWFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVS---------  153 (382)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHH---------
Confidence            233344688999999999999987777775 6676665  4678888999999999999999999999998         


Q ss_pred             cccccccCccchHHHHHHHHHHHHHHHHHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhccCCCCccccccchhH
Q 013991          205 SSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPL  284 (432)
Q Consensus       205 gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (432)
                             .++|+.++...++..++..+..+..||.+++.+++++                   .++.....++++|+|++
T Consensus       154 -------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~i~~~~~~  207 (382)
T PRK11128        154 -------WFGEQAILWILTAGVASMLLGQLLRPTIMPQGESRQQ-------------------ESAGWPAWKALLKEPTV  207 (382)
T ss_pred             -------HcChhHHHHHHHHHHHHHHHHHHccCCCCCccccccc-------------------cccccchHHHHHcChhH
Confidence                   4445555565554444333333344543221111000                   00112356788999999


Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhChhHHHHHHHHHH
Q 013991          285 MSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLT  364 (432)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  364 (432)
                      +...+..++..........+.|.|..+      .|++..+.|.+.+...+..++.. ++.+++.||+++++.+..+....
T Consensus       208 ~~~~~~~~l~~~~~~~~~~~~~~~~~~------~g~s~~~~g~~~~~~~~~~~~~~-~~~g~l~~r~~~~~~l~~~~~~~  280 (382)
T PRK11128        208 WRFLLCVSLLQGSHAAYYGFSAIYWQA------AGYSASTIGYLWSLGVVAEVLIF-AFSNRLFRRWSARDLLLLSAICG  280 (382)
T ss_pred             HHHHHHHHHHHHHhHhHHHHHHHHHHH------CCCCHhHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHH
Confidence            888777777776666777778887754      58899999999998878777776 58889999999999988888877


Q ss_pred             HHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHHH
Q 013991          365 IPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWF  426 (432)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~  426 (432)
                      .+..+.+....+..      ...+..++.++..+...+....+..+. +++++++..+.+..
T Consensus       281 ~~~~~~~~~~~~~~------~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  335 (382)
T PRK11128        281 VVRWGLMGSTTALP------WLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSA  335 (382)
T ss_pred             HHHHHHHHhhhhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHH
Confidence            77666554433211      234455555666666677777777776 55566887777653

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.95  E-value=1.3e-24  Score=205.50  Aligned_cols=325  Identities=13%  Similarity=0.146  Sum_probs=205.5

Q ss_pred             hHHHHHHHHHHhhccccchhhhHHH-HHHHhcCCccccchhhhhhHHHHHHhH-HHHHHHHhhhhhhhccCChHHH-HHH
Q 013991           42 ELFSIWIIVLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMF-GRALTSVFWGLVADRYGRKPVI-IMG  118 (432)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~s~~~~-~~~~~~~~~G~l~dr~Grr~~l-~~~  118 (432)
                      .....++..++..+......|.+|. +.+++|.+.++      .|++.+...+ +..++.++.|+ +||+||||.+ ..+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~------~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~   88 (393)
T PRK15011         16 TSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAM------VGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFC   88 (393)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHH
Confidence            3445566678888888888888875 57889999999      9999877655 55555544555 9999999875 455


Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHhhhccchhhH-Hhhhhhhcccchhh--hhhhhHHHHHHHHHHHHHHHHhhhcc
Q 013991          119 TASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQA--LGLSTVSTAWGIGLIIGPALGGFLAQ  195 (432)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~--~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (432)
                      .++..++..+.+++++++.+++.+.+.|...+...|. .+++.|+.++++|.  ...+..+.+.++|.++||.+++.+.+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~  168 (393)
T PRK15011         89 CLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAM  168 (393)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            6666677888888999998876665555444455565 77888877766553  44578888999999999999999988


Q ss_pred             cCCcCCCcccccccccCccchHHHHHHHHHHHHHH-HHHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhccCCCC
Q 013991          196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATP  274 (432)
Q Consensus       196 ~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (432)
                                      ..+|+.++...++..++.. +..+.+||.+++++++++  + .                   ..
T Consensus       169 ----------------~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~-------------------~~  210 (393)
T PRK15011        169 ----------------GFSFTVMYLSAAVAFIVCGVMVWLFLPSMRKELPLATG--T-L-------------------EA  210 (393)
T ss_pred             ----------------hcChHHHHHHHHHHHHHHHHHHHhhcCccCCCCccccc--c-c-------------------cc
Confidence                            4455555577766555543 344567776433221100  0 0                   00


Q ss_pred             ccccccchhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhChh
Q 013991          275 KKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPI  354 (432)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~  354 (432)
                      .++  +.+..+...............+..+.|.|+++.     +|+++.+.+.+.+...+..+++. ++.+++.||+++|
T Consensus       211 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-----~~~~~~~~g~~~~~~~~~~i~~~-~~~G~l~dr~g~~  282 (393)
T PRK15011        211 PRR--NRRDTLLLFVICTLMWGTNSLYIINMPLFIINE-----LHLPEKLAGVMMGTAAGLEIPTM-LIAGYFAKRLGKR  282 (393)
T ss_pred             ccc--ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhChH
Confidence            000  111222232333333344445556778777665     68888899988877777666666 6889999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHHH
Q 013991          355 MVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWF  426 (432)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~  426 (432)
                      +....+.....+.+.......   + . + ...+...+.++..+...+.......|..|+ ++|++.+.+..
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~---~-~-~-~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~  347 (393)
T PRK15011        283 FLMRVAAVAGVCFYAGMLMAH---S-P-A-ILLGLQLLNAIYIGILGGIGMLYFQDLMPG-QAGSATTLYTN  347 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh---h-H-H-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHH
Confidence            887766555444333322211   1 1 1 112222222223333334445666777775 48888887654

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.95  E-value=3e-25  Score=213.16  Aligned_cols=341  Identities=21%  Similarity=0.211  Sum_probs=261.3

Q ss_pred             CCCchhHHHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHH
Q 013991           37 GLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII  116 (432)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~  116 (432)
                      +.+.+.+..++.+.++..++..+.....+.+..+..-|+..      .+++..+..+...+.+++.|.++||++||++++
T Consensus         6 plr~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~------valv~~a~~LP~~Llsl~aG~laDr~drrrili   79 (524)
T PF05977_consen    6 PLRNRNFRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLM------VALVQAASTLPILLLSLFAGALADRFDRRRILI   79 (524)
T ss_pred             cccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHhhcccchHHHH
Confidence            34556788889999999999999988888888888778877      999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHH
Q 013991          117 MGTASVVIFNTLFGLS-----VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG  190 (432)
Q Consensus       117 ~~~~~~~~~~~~~~~~-----~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~  190 (432)
                      .+-++..+..+..++.     .+.+.+++.-++.|++.+...|+ .+++.|+.|+++...++++.+...++..++||.++
T Consensus        80 ~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalg  159 (524)
T PF05977_consen   80 LSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALG  159 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHH
Confidence            9987776655444432     36788999999999999999998 99999999999999999999999999999999999


Q ss_pred             hhhcccCCcCCCcccccccccCccchHHHHHHHHHHHHHHHHHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhcc
Q 013991          191 GFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGR  270 (432)
Q Consensus       191 ~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (432)
                      |.+..                ..+....+.+.++..++.++.+...++..+..+..   .+...++              
T Consensus       160 G~Lva----------------~~G~~~~f~inalsfl~~i~~l~~~~~~~~~~~~~---~e~~~~~--------------  206 (524)
T PF05977_consen  160 GILVA----------------FFGAAAAFLINALSFLISILALLRWKPPPPPSSLP---RERFFSA--------------  206 (524)
T ss_pred             HHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHccccccccccc---hhhhhhh--------------
Confidence            99987                33344445666655555444444444322211111   0000000              


Q ss_pred             CCCCccccccchhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHH
Q 013991          271 EATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI  350 (432)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~  350 (432)
                      -....+.+.++|.+...++..+++.+........+|.+..+.     +|.++...|++.+..+++++++++ +.+++.+|
T Consensus       207 l~~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~-----l~~~a~~yGll~a~~gvGai~Gal-~~~~l~~~  280 (524)
T PF05977_consen  207 LREGLRYVRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDV-----LGGGASGYGLLLAAFGVGAILGAL-LLPRLRRR  280 (524)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHH-----hCCcHHHHHHHHHHHHHHHHHHHH-HHHHhhcc
Confidence            112344455667766666666666666666777888887765     788999999999999999999984 78889999


Q ss_pred             hChhHHHHHHHHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHHHHh
Q 013991          351 LGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWFVK  428 (432)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~~  428 (432)
                      +++++++..+.+..+++++.+++.....      ...+..++.|++........++...+.+|++.||++.+++..+.
T Consensus       281 ~~~~~lv~~~~~~~a~~~~~lal~~~~~------~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~  352 (524)
T PF05977_consen  281 LSSRRLVLLASLLFALALLLLALSPSFW------LALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVF  352 (524)
T ss_pred             cCcchhhHHHHHHHHHHHHHHhcchHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHH
Confidence            9988888888888777777766654433      34445566677777778888899999999999999999987653

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.95  E-value=1.4e-25  Score=211.84  Aligned_cols=277  Identities=16%  Similarity=0.200  Sum_probs=222.8

Q ss_pred             HHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHh
Q 013991           69 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSV--NFWMAVLTRFLLG  146 (432)
Q Consensus        69 ~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~~~G  146 (432)
                      .+++.+.++      .+++.+++..|+.+++++.|++.||+|-|+++..+.++.++++++...+.  +++.+++.|+++|
T Consensus        66 ~~~~ws~~~------k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqG  139 (466)
T KOG2532|consen   66 GEYDWSSTE------KGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQG  139 (466)
T ss_pred             ceecCCHHH------HHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhH
Confidence            457777777      99999999999999999999999999999999999999999999998875  4567899999999


Q ss_pred             hhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCcCCCcccccccccCccchHHHHHHHHH
Q 013991          147 SLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLF  225 (432)
Q Consensus       147 ~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~  225 (432)
                      ++.|...|+ ..+.+.|.|++||++..++...+..+|.+++.+++|++.+.      .+||         +.++++.+..
T Consensus       140 l~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s------~~GW---------~sifY~~g~~  204 (466)
T KOG2532|consen  140 LGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCES------SLGW---------PSIFYVFGIV  204 (466)
T ss_pred             HHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc------CCCC---------chHHHHHHHH
Confidence            999999887 99999999999999999999999999999999999999981      1454         4555888888


Q ss_pred             HHHHHHHH-hhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhcc--CCCCccccccchhHHHHHHHHHHHHHHhhhHH
Q 013991          226 AFGVTIAA-FWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGR--EATPKKSLLKNWPLMSSIIVYCVFSLHDMAYS  302 (432)
Q Consensus       226 ~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (432)
                      +++..+++ ++..|+|.+++...+      +|++..+++..+++.+  .+.+++++++++.+|...+..+........+.
T Consensus       205 g~i~~~~w~~~~~d~P~~h~~is~------~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~  278 (466)
T KOG2532|consen  205 GLIWFILWFLFYSDSPSKHPNISE------KELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLL  278 (466)
T ss_pred             HHHHHHHHHHHhcCCcccCCCCCH------HHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence            87755554 455566655333221      2222222222222222  57789999999999999999999999999999


Q ss_pred             HHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhCh---------hHHHHHHHHHHHHHHHHhhH
Q 013991          303 EIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGP---------IMVARIAGVLTIPLLTSYPY  373 (432)
Q Consensus       303 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~~~~~~~~~~~~~~~  373 (432)
                      .+.|.|+.+.     +|++..+.|++.++..+...+.. ++++.++||..+         |-.-.++....++.++.+++
T Consensus       279 ~y~PtY~~~V-----L~f~v~~~G~~salP~l~~~~~k-~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~  352 (466)
T KOG2532|consen  279 TYLPTYLKEV-----LGFDVRETGFLSALPFLAMAIVK-FVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAF  352 (466)
T ss_pred             HHhhHHHHHH-----hCCChhhhhHHHHHHHHHHHHHH-HHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeee
Confidence            9999999998     89999999999999999999998 599999998754         22333555666666666666


Q ss_pred             HHhhh
Q 013991          374 IAMLS  378 (432)
Q Consensus       374 ~~~~~  378 (432)
                      .....
T Consensus       353 ~~~~~  357 (466)
T KOG2532|consen  353 TSDEH  357 (466)
T ss_pred             cCCCc
Confidence            65434

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.95  E-value=1.1e-25  Score=241.18  Aligned_cols=351  Identities=17%  Similarity=0.084  Sum_probs=242.5

Q ss_pred             hhHHHHHHHHHHhhcccc-chhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHH
Q 013991           41 TELFSIWIIVLCTALPIS-SLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (432)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~  119 (432)
                      +.+..+++..++..+... ......+.+..+++.+...    ...+++.+++.+++.++++++|+++||+|||++++++.
T Consensus         9 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~   84 (1146)
T PRK08633          9 IGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQV----ILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVK   84 (1146)
T ss_pred             hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHH----HHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHH
Confidence            445545555555544433 3344445666667654332    23789999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHh---hhhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcc
Q 013991          120 ASVVIFNTLFG---LSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (432)
Q Consensus       120 ~~~~~~~~~~~---~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (432)
                      ++.++..++..   .+++++.++++|+++|++.+...++ .+++.|++|+++|++++++.+.+.++|.++||.+++++.+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~  164 (1146)
T PRK08633         85 LFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFE  164 (1146)
T ss_pred             HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            77666555443   4578999999999999999988886 9999999999999999999999999999999999999986


Q ss_pred             cCCcCCCccccc--ccccCccchHHHHHHHHHHHHHHHHHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhccCCC
Q 013991          196 PAEKYPNLFSSE--SLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREAT  273 (432)
Q Consensus       196 ~~~~~~~~~gw~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (432)
                      .       +++.  ..+ .+.++..+.+.....++.++..+.+||.++......+..+..  .           ......
T Consensus       165 ~-------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----------~~~~~~  223 (1146)
T PRK08633        165 S-------VNGNTPSEI-LGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVFDKKKYL--F-----------PKLLWR  223 (1146)
T ss_pred             h-------hcccccccc-ccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCcccccccccc--c-----------HHHHHH
Confidence            2       1000  000 111222222223333334444556677654432211000000  0           000011


Q ss_pred             CccccccchhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccc-hhhHHHHHHHHHHHHHHHHhHHHHHHHhC
Q 013991          274 PKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQ-MVGEVLAITGFSLLVFQLSLYPFLERILG  352 (432)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~-~~g~~~~~~~~~~~~~~~~~~~~l~~~~~  352 (432)
                      .++.+++++.++...+..++..........++|.|+...     +|++.. ..|++.+..+++.++++ ++.+++.||.+
T Consensus       224 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~s~~~~~g~~~~~~~ig~~~g~-~~~g~l~~r~~  297 (1146)
T PRK08633        224 NLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEV-----LGLDNTFQVQYLLAASAIGIGIGS-LLAGRLSGRHI  297 (1146)
T ss_pred             HHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-----hCCCcHHHHHHHHHHHHHHHHHHH-HHHHHHhCCce
Confidence            345567788877777666666666666677788887665     688888 89999999999988888 58899999999


Q ss_pred             hhHHHHHHHHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHHHHh
Q 013991          353 PIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWFVK  428 (432)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~~  428 (432)
                      +++.+.++.++.+++++++.+....      ....+..++.+++.+...+...+++.+..|++.||++.+..+++.
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~  367 (1146)
T PRK08633        298 ELGLVPLGALGLALSLFLLPTAPSL------ASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQ  367 (1146)
T ss_pred             EccchhHHHHHHHHHHHHHHHhhhH------HHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHH
Confidence            8888777777666666555443321      233445556666777777788899999999999999998877654

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.95  E-value=9e-27  Score=230.36  Aligned_cols=311  Identities=16%  Similarity=0.138  Sum_probs=230.9

Q ss_pred             HHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHH
Q 013991           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (432)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~  124 (432)
                      ...+..+...+..+...+.++.+.++|+++..+      .|++.+.+.+++.++.++.|+++||+|||+.+.++.+++++
T Consensus        37 ~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~------~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~l  110 (633)
T TIGR00805        37 LLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSS------SGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGL  110 (633)
T ss_pred             HHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCc------ceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHH
Confidence            334455666666778888889999999999999      99999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhh---------------------------------------------------hHHHHHHHHHHHhhhccchh
Q 013991          125 FNTLFGLSV---------------------------------------------------NFWMAVLTRFLLGSLNGLLG  153 (432)
Q Consensus       125 ~~~~~~~~~---------------------------------------------------~~~~l~~~r~~~G~~~g~~~  153 (432)
                      +++++++++                                                   .+..++++|+++|+|.+...
T Consensus       111 g~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~  190 (633)
T TIGR00805       111 GSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIF  190 (633)
T ss_pred             HHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcch
Confidence            999998764                                                   24567899999999999988


Q ss_pred             hH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCcCCC---------cccccccccCccchHHHHHHH
Q 013991          154 PI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPN---------LFSSESLFGKFPYFLPCLCIS  223 (432)
Q Consensus       154 ~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~---------~~gw~~~~~~~~~~~~~~~~~  223 (432)
                      +. .+++.|++|+++|++.+++++.+..+|.++|+++++++.+...+|+.         -.+||  | ..+||..|++.+
T Consensus       191 ~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dpr--W-iGaWwl~Fli~g  267 (633)
T TIGR00805       191 PLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPR--W-IGAWWIGFLICG  267 (633)
T ss_pred             hcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCcc--H-HHHHHHHHHHHH
Confidence            86 99999999999999999999999999999999999999863222110         00111  1 224888888888


Q ss_pred             HHHHHHHHHHhhcccccCCCCCCCcchhhhHHHhhh-hh---hhhhhhhccCCCCccccccchhHHHHHHHHHHHHHHhh
Q 013991          224 LFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALES-AS---AEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDM  299 (432)
Q Consensus       224 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (432)
                      ++.++..+.++++|++.+....+.+.+....+..++ ..   .+..+..++.+...+.+++||.++...+..++......
T Consensus       268 ~l~~l~~v~l~~~p~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~  347 (633)
T TIGR00805       268 GVALLTSIPFFFFPKALPKEGKRVNVDVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFN  347 (633)
T ss_pred             HHHHHHHHHHHhCccccCCcccccchhhhhhhcccccccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence            777776556666776543221111000000000000 00   00000011122346678999999999999999888889


Q ss_pred             hHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHH-HHHHHHHhHHHHHHHhC--hhHHHHHHHHHHHHHHHH
Q 013991          300 AYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFS-LLVFQLSLYPFLERILG--PIMVARIAGVLTIPLLTS  370 (432)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~-~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~  370 (432)
                      ++..++|.|+++.     +|+++.+++.+.....+. .+++. ++++++.||++  .++.+..+.++..++++.
T Consensus       348 ~~~~~lP~yl~~~-----~g~s~~~ag~l~~~~~i~~~~vG~-~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~  415 (633)
T TIGR00805       348 GYITFLPKYLENQ-----YGISSAEANFLIGVVNLPAAGLGY-LIGGFIMKKFKLNVKKAAYFAICLSTLSYLL  415 (633)
T ss_pred             HHHHHHHHHHHHH-----cCCcHHHHHHHhhhhhhhHHHHHH-hhhhheeeeecccHHHHHHHHHHHHHHHHHH
Confidence            9999999999876     799999999999887764 45555 68999999887  556767666666655433

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.95  E-value=1.1e-24  Score=210.85  Aligned_cols=339  Identities=13%  Similarity=0.136  Sum_probs=229.8

Q ss_pred             CchhHHHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhcc-----CChH
Q 013991           39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-----GRKP  113 (432)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-----Grr~  113 (432)
                      ++|+...++...+..+.......+.+|.+.++.|.+.++      ++.. +.....+ ++.+++|+++||+     |||+
T Consensus        10 ~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~------ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr   81 (491)
T PRK11010         10 QQPNSAILLILGFASGLPLALTSGTLQAWMTVENIDLKT------IGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRR   81 (491)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH------HHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCch
Confidence            345566777777788888888899999999999999988      8876 4444443 6899999999999     9988


Q ss_pred             H-HHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHH
Q 013991          114 V-IIMGTASVVIFNTLFGLS---VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPA  188 (432)
Q Consensus       114 ~-l~~~~~~~~~~~~~~~~~---~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~  188 (432)
                      . +..+.++.+++..++++.   ++++.+.+.+++.|++.+...+. .+++.|++|+++|+++.++...+..+|.++++.
T Consensus        82 ~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~  161 (491)
T PRK11010         82 GWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGG  161 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHH
Confidence            5 667777777777777664   47888999999999987777765 999999999999999999999999999999999


Q ss_pred             HHhhhcccCCcCCCcccccccccCccchHHHHHHHHHHHHHHHHHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhh
Q 013991          189 LGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEE  268 (432)
Q Consensus       189 ~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (432)
                      +++++.+       .        .++|+.++.+.++..++..+..++.||+++..++ +++.  . +             
T Consensus       162 l~~~l~~-------~--------~~GWr~~f~i~a~l~ll~~l~~~~~~e~~~~~~~-~~~~--~-~-------------  209 (491)
T PRK11010        162 LALWLAD-------R--------YLGWQGMYWLMAALLIPCIIATLLAPEPTDTIPV-PKTL--E-Q-------------  209 (491)
T ss_pred             HHHHHHh-------c--------ccCHHHHHHHHHHHHHHHHHHHHhcCCCcccccc-ccch--h-h-------------
Confidence            9999886       1        1356666677777666655555567776432111 0000  0 0             


Q ss_pred             ccCCCCccccccchhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHH-HHHHHHHHHHHHhHHHH
Q 013991          269 GREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLA-ITGFSLLVFQLSLYPFL  347 (432)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~-~~~~~~~~~~~~~~~~l  347 (432)
                       ....+.++.++++..+...+..+++.........+.+.|+.+.     +|++..+.+.... ...++.+++. ++++++
T Consensus       210 -~~~~~l~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~-----~G~s~~~~g~~~~~~g~i~~iiG~-ll~G~L  282 (491)
T PRK11010        210 -AVVAPLRDFFGRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRG-----VGFDAGEVGLVNKTLGLLATIVGA-LYGGIL  282 (491)
T ss_pred             -hHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence             0001234456666666555555555545445555666665443     6899999999875 4446777776 699999


Q ss_pred             HHHhChhHHHHHHHHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHHH
Q 013991          348 ERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWF  426 (432)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~  426 (432)
                      .||+++++.+.++.++..+..+.+........ ..+ .+....++..+..+...+...+...+..+++.+++.+|.++.
T Consensus       283 ~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~-~~~-~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s  359 (491)
T PRK11010        283 MQRLSLFRALMIFGILQGVSNAGYWLLSITDK-NLY-SMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSA  359 (491)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHhccc-cHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence            99999988777665544443332221111111 111 122223332333344445567777788888888887776654

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.94  E-value=8.6e-25  Score=213.31  Aligned_cols=362  Identities=13%  Similarity=0.067  Sum_probs=235.6

Q ss_pred             HHHHHHhhcc--ccchhhhHHHHHHHhcCCccccchh-hhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHH
Q 013991           47 WIIVLCTALP--ISSLFPFLYFMIKDFQIAKREEDIG-SYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVV  123 (432)
Q Consensus        47 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~s~~~~~~~-~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~  123 (432)
                      ....+..+.+  .....+....+.++...+..+.... ...+++.+...++..+++++.|+++|++|||+.++++.+.+.
T Consensus        51 ~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~  130 (513)
T KOG0254|consen   51 ALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFL  130 (513)
T ss_pred             HHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            3334444443  4555666666665432222211000 115899999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCcCCC
Q 013991          124 IFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPN  202 (432)
Q Consensus       124 ~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~  202 (432)
                      ++.+++++++|+++++++|+++|+|.|..... ..+++|+.|++.||...+..+....+|..++..++....+       
T Consensus       131 iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~-------  203 (513)
T KOG0254|consen  131 IGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSK-------  203 (513)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhcc-------
Confidence            99999999999999999999999998887665 9999999999999999999999999999999666555443       


Q ss_pred             cccccccccCccchHHHHHHHHHHHHHHHHHhhcccccCCCCCCCcchhhhH--HHh------------hhhh-hhhhhh
Q 013991          203 LFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSY--DAL------------ESAS-AEVKEE  267 (432)
Q Consensus       203 ~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~--~~~------------~~~~-~~~~~~  267 (432)
                      .        .++||.++.+..+.+++..+..+++||+|++..++.+..+...  ..+            +..+ ....+.
T Consensus       204 ~--------~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~  275 (513)
T KOG0254|consen  204 V--------YAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEA  275 (513)
T ss_pred             C--------CccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhh
Confidence            0        1457777788888888877778889999988655433322221  111            1111 000011


Q ss_pred             hccCC-CCccccccchhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHH
Q 013991          268 EGREA-TPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPF  346 (432)
Q Consensus       268 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~  346 (432)
                      ..... ..+.++++........+...+..+.+.........|..+.  .+..|.+... .......++..+++. .++..
T Consensus       276 ~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~i--f~~~g~~~~~-~~~~~~~~~v~~~~t-~~~~~  351 (513)
T KOG0254|consen  276 EVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTI--FKSAGLKSDT-FLASIILGVVNFLGT-LVATY  351 (513)
T ss_pred             hcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHH--HHhcCCCCch-HHHHHHHHHHHHHHH-HHHHH
Confidence            11111 1233444422222333333333333332222222222211  2223444332 333444455555555 46688


Q ss_pred             HHHHhChhHHHHHHHHHHHHHHHHhhHHHhhhh-------hHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhh
Q 013991          347 LERILGPIMVARIAGVLTIPLLTSYPYIAMLSG-------FGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYT  419 (432)
Q Consensus       347 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~  419 (432)
                      +.||.|||+++..+.....+++++++.......       ...+..+....+....+..+..|..+.+.+|..|.+.|++
T Consensus       352 lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~  431 (513)
T KOG0254|consen  352 LVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSK  431 (513)
T ss_pred             HHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhh
Confidence            999999999999999998888877765543321       1234445555556666777778888899999999999988


Q ss_pred             hhhHHHHH
Q 013991          420 LSCHFWFV  427 (432)
Q Consensus       420 ~~~~~~~~  427 (432)
                      +.+.-..+
T Consensus       432 ~~s~~~~~  439 (513)
T KOG0254|consen  432 GASLAVAV  439 (513)
T ss_pred             hHHHHHHH
Confidence            77655443

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.94  E-value=1.2e-25  Score=212.49  Aligned_cols=344  Identities=16%  Similarity=0.088  Sum_probs=243.1

Q ss_pred             HHHHHHHhhccccc-hhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHH
Q 013991           46 IWIIVLCTALPISS-LFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (432)
Q Consensus        46 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~  124 (432)
                      ++...+....+... ..+.+..+.+|.+....+      .+.+.+++.++++++.++.|.+.||++-.+.+....+++++
T Consensus        50 ~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~~------l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~  123 (495)
T KOG2533|consen   50 LCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQ------LGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGL  123 (495)
T ss_pred             HHHHHHHHhcchhcchhHHHcCCccccchhhhh------hhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHH
Confidence            33344444444332 223333455788888888      99999999999999999999999999999999999899988


Q ss_pred             HHHHHhhhhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCcCCCc
Q 013991          125 FNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNL  203 (432)
Q Consensus       125 ~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~  203 (432)
                      ..++....+|++.+++.|++.|+.++...|. ..++..++.+++|++.++++.+..++|.++|++++..+.+ ..+....
T Consensus       124 ~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~-~~~~~~~  202 (495)
T KOG2533|consen  124 FGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFK-LNGSGGL  202 (495)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhh-hcCCCCc
Confidence            8888888999999999999999999999997 9999999999999999999999999999999999998765 2222235


Q ss_pred             ccccccccCccchHHHHHHHHHHHH-HHHHHhhcccccCCCCCCCcchhhh-HHHhhhhhhhhhhhhccCCCCccccccc
Q 013991          204 FSSESLFGKFPYFLPCLCISLFAFG-VTIAAFWLPETLHRHNDDDDSCDVS-YDALESASAEVKEEEGREATPKKSLLKN  281 (432)
Q Consensus       204 ~gw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (432)
                      .|||+.|         ++.+++.++ .+++.+++|+.|.+.+-..++++.. .++.++...+..+++ .+....++.+++
T Consensus       203 ~gW~~~F---------iI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~d  272 (495)
T KOG2533|consen  203 AGWRWLF---------IIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRESPSGGIENK-FKWKGFKEALKD  272 (495)
T ss_pred             CCceeeh---------hHHHHHHHHHHheEEEEecCChhhccccchHHHHHHHHHHHhccCCCcccc-cCHHHHHHHHhc
Confidence            6666655         777776666 5566678999887543222222111 111111111111111 455667889999


Q ss_pred             hhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHh----ChhHHH
Q 013991          282 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL----GPIMVA  357 (432)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~  357 (432)
                      |.+|...+..++......++.+++|.|+.+.     .|++..+++.+..+..++++++. ++++.++||.    .++...
T Consensus       273 p~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~-----~~~s~~~a~~ls~~~~~~g~v~~-i~ag~lsdr~~~~~~~~~~~  346 (495)
T KOG2533|consen  273 PGVWPFSLCYFFLKLVNYGFSYWLPLYLKSN-----GGYSELQANLLSTPYDVGGIVGL-ILAGYLSDRLKTIFARRLLF  346 (495)
T ss_pred             hhHHHHHHHHHHHhhccccHHHHHHHHHHcC-----CCcChHHhccccchHHhhhHHHH-HHHHHHHHHHhhhHHHHHHH
Confidence            9999999999999999999999999999883     58999999999999999999997 5999999994    444444


Q ss_pred             HHHHHHHH-HHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchh
Q 013991          358 RIAGVLTI-PLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTY  418 (432)
Q Consensus       358 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g  418 (432)
                      .....+.. ++...+.......      .................++.....++....+.|.
T Consensus       347 ~~~~~~~~~~g~~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~  402 (495)
T KOG2533|consen  347 IVFLCLYAIIGAISLLAAAVLP------GAYGAFLIGPYGLIATAIIALSWTSANLAGNTKA  402 (495)
T ss_pred             HHHHHHHHHHHHHHHHhhccch------HHhHHHHhcchhhHHHHHHHHhhccccccchHHh
Confidence            43333322 2222222221111      1222222222233444555666666666555443

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.94  E-value=6.9e-25  Score=234.39  Aligned_cols=307  Identities=14%  Similarity=0.078  Sum_probs=219.8

Q ss_pred             hhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHH---HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhccchhhH-Hhhh
Q 013991           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM---GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYA  159 (432)
Q Consensus        84 ~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~---~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i  159 (432)
                      .++..+++.+++.++++++|+++||+|||+++..   ..+...+..+.....+++++++++|+++|++.+...|+ .+++
T Consensus        54 ~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l  133 (1140)
T PRK06814         54 VTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSIL  133 (1140)
T ss_pred             HHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhh
Confidence            7888899999999999999999999999997643   22222333333334589999999999999999998887 9999


Q ss_pred             hhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCcCCCcccccccccCccchHHHHHHHHHHHHHHHHHhhcccc
Q 013991          160 CEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPET  239 (432)
Q Consensus       160 ~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  239 (432)
                      .|++|+++|++++++.+++.++|.++||++++++.+                ..+|+..+...++..++.++..+++|++
T Consensus       134 ~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (1140)
T PRK06814        134 PDHLNKDELLGANALVEAGTFIAILLGTIIGGLATI----------------SGNFVILVALLMGIAVLGWLASLFIPKT  197 (1140)
T ss_pred             HhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHh----------------ccccHHHHHHHHHHHHHHHHHHhhCCCC
Confidence            999999999999999999999999999999999987                3345554444444444455555667765


Q ss_pred             cCCCCCCCcchhhhHHHhhhhhhhhhhhhccCCCCccccccchhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcc
Q 013991          240 LHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLN  319 (432)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  319 (432)
                      ++.......+.... ++              ....++.+.+++.++...+..++..+....+..++|.|..+.     +|
T Consensus       198 ~~~~~~~~~~~~~~-~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-----~g  257 (1140)
T PRK06814        198 GNAAPDLKIDRNII-RS--------------TITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKET-----LG  257 (1140)
T ss_pred             CCCCCCCeeccchH-HH--------------HHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----cC
Confidence            43322111100000 00              011355677888888888887777777777778899988775     68


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHhHHHHHHHhChhHHHHHHHHHHHHHHHHhhHHH---------------hhhhhHHHH
Q 013991          320 YSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIA---------------MLSGFGLAF  384 (432)
Q Consensus       320 ~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~  384 (432)
                      .++.+.|.+.+..++++++++ ++.+++.|+..+++.+..+.++..+..+.+.+..               .......| 
T Consensus       258 ~~~~~~g~~~~~~~~g~~ig~-~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-  335 (1140)
T PRK06814        258 GDENVATLFLAVFSVGVAVGS-FLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGW-  335 (1140)
T ss_pred             CchHHHHHHHHHHHHHHHHHH-HHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccH-
Confidence            899999999999999999998 5788888776655555544444443333222210               00001112 


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHHHHh
Q 013991          385 LLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWFVK  428 (432)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~~  428 (432)
                      .+.+..++.+++.+...+...+++.+.+|++.+|++.|.+++..
T Consensus       336 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~  379 (1140)
T PRK06814        336 RILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLN  379 (1140)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHH
Confidence            23445555667777778889999999999999999999887654

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.94  E-value=5.8e-24  Score=201.85  Aligned_cols=328  Identities=15%  Similarity=0.200  Sum_probs=224.0

Q ss_pred             HHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhcc-----CChH-HHHHHHH
Q 013991           47 WIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-----GRKP-VIIMGTA  120 (432)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-----Grr~-~l~~~~~  120 (432)
                      ....+..++........+|.+.++.|.|.++      +|++..+...  .+..+++|+++||+     |||| .+.++.+
T Consensus         5 ~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~------ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~   76 (402)
T PRK11902          5 LLLGFASGLPLALTSGTLQAWMTVEGLDIQT------IGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQV   76 (402)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHH
Confidence            4456677778888889999999999999999      9999776665  58999999999999     8865 7888888


Q ss_pred             HHHHHHHHHhhh---hhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhccc
Q 013991          121 SVVIFNTLFGLS---VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP  196 (432)
Q Consensus       121 ~~~~~~~~~~~~---~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  196 (432)
                      +.+++..+.++.   .+++.+++..++.++..+...+. .+++.|+.|+|+|+++.++...+.++|.++++.+++.+.+ 
T Consensus        77 ~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~-  155 (402)
T PRK11902         77 GLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLAD-  155 (402)
T ss_pred             HHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHh-
Confidence            888877777776   45777888877888777777775 9999999999999999999999999999999999998876 


Q ss_pred             CCcCCCcccccccccCccchHHHHHHHHHHHHHHHHHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhccCCCCcc
Q 013991          197 AEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKK  276 (432)
Q Consensus       197 ~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (432)
                            .        .++|+.++.+.++..++..+..++.||++++++++++   .. ++              .....+
T Consensus       156 ------~--------~~gw~~~f~i~a~~~l~~~l~~~~~~e~~~~~~~~~~---~~-~~--------------~~~~~~  203 (402)
T PRK11902        156 ------R--------VLGWGNTYLLMAGLMLAGALTTLWAPEPEVPARPPRS---LG-EA--------------VVGPLR  203 (402)
T ss_pred             ------c--------ccCHHHHHHHHHHHHHHHHHHHHhcCCCcccccccch---hH-HH--------------HHHHHH
Confidence                  1        1256666677776665555555667775433211110   00 00              011345


Q ss_pred             ccccchhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHH-HHHHHHHHhHHHHHHHhChhH
Q 013991          277 SLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGF-SLLVFQLSLYPFLERILGPIM  355 (432)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~  355 (432)
                      +++|+|.++...+..++..........+.+.++.+.     +|+++.+.+.+....+. +.+++. ++++++.||+++++
T Consensus       204 ~l~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~-----~G~~~~~~g~~~~~~~~~~~i~g~-~~~g~l~~r~g~~~  277 (402)
T PRK11902        204 DFFSRRGAWALLLLIVLYKLGDAFAGSLSTTFLIRG-----AGFSAGEVGIVNKTLGLAATIVGA-LAGGTLMVRLGLYR  277 (402)
T ss_pred             HHHhCcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHhHHH
Confidence            678888887766665555544333333334344433     68899999998876655 456665 68999999999998


Q ss_pred             HHHHHHHHHHHHHHHhhHHHhhhhhHHHHHHH---HHHHHHHhhhhhHHHHHHHHHhccccccchhhhhh
Q 013991          356 VARIAGVLTIPLLTSYPYIAMLSGFGLAFLLN---CASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSC  422 (432)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~  422 (432)
                      .+..+.....+..+.+.......+ ..+....   +..+..++..+...+....++.+..|.++++..++
T Consensus       278 ~l~~~~~~~~l~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (402)
T PRK11902        278 SLMLFGVLQAVSNLGYWVLAVTPK-HLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQYALLSA  346 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence            877666655544333322211111 1111111   11134445555667777778888888777765333

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.94  E-value=7e-24  Score=204.32  Aligned_cols=361  Identities=14%  Similarity=0.079  Sum_probs=231.4

Q ss_pred             CchhHHHHHHHHHHhhccccchhhhHH-HHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhc-cCChHHHH
Q 013991           39 PITELFSIWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKPVII  116 (432)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~l~  116 (432)
                      +++.++.++...+...+..+...+.++ ++.+++|.+..+      .+++.+.+.....+..++.|+++|| +||||+++
T Consensus        12 ~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~------a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~   85 (489)
T PRK10207         12 QPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQ------AFITFGAFAALVYGLISIGGYVGDHLLGTKRTIV   85 (489)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHH
Confidence            346677777777778888777777665 567789999988      9999999998888889999999999 99999999


Q ss_pred             HHHHHHHHHHHHHhhhhhHHH-HHHHHHHHhhhccchhhH-Hhhhhhhcccc--hhhhhhhhHHHHHHHHHHHHHHHHhh
Q 013991          117 MGTASVVIFNTLFGLSVNFWM-AVLTRFLLGSLNGLLGPI-KAYACEIFREE--HQALGLSTVSTAWGIGLIIGPALGGF  192 (432)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~-l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~g~~~~~~  192 (432)
                      ++.+++.+++++++++++... ++++|+++|+|.|...+. .+++.|.+|++  +|++++++++.+.++|..+||.++++
T Consensus        86 ~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~  165 (489)
T PRK10207         86 LGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPV  165 (489)
T ss_pred             HHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999876444 558999999999988775 99999999877  45789999999999999999999999


Q ss_pred             hcccCCcCCCcccccccccCccchHHHHHHHHHHHHHHHHHhhcccccCCCC--CCCcchhhhHH---------------
Q 013991          193 LAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHN--DDDDSCDVSYD---------------  255 (432)
Q Consensus       193 l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~--~~~~~~~~~~~---------------  255 (432)
                      +.+       .+||         +..|.+.++..+..++.....++..+...  .++++.+....               
T Consensus       166 l~~-------~~gw---------~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~  229 (489)
T PRK10207        166 IAD-------KFGY---------SVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCA  229 (489)
T ss_pred             HHH-------hhCh---------HHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHH
Confidence            998       4454         44445554433333333333332221111  10101110000               


Q ss_pred             Hhhh-hhhhh---------------hhhhccCCCCccccccchhHHHHHHH--HHHHHHHhhhHHHHHHhhhcCCCcCCC
Q 013991          256 ALES-ASAEV---------------KEEEGREATPKKSLLKNWPLMSSIIV--YCVFSLHDMAYSEIFSLWANSPKKLGG  317 (432)
Q Consensus       256 ~~~~-~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (432)
                      ...+ .....               .++.+     ..+.+|+|.+....+.  ..++..........++.|.++......
T Consensus       230 ~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~-----~~~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~  304 (489)
T PRK10207        230 WLMHNVEVANLVLIVLSIVVTIIFFREAFK-----LDKTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEI  304 (489)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccc
Confidence            0000 00000               00011     1145566655443322  333334444444566666653222221


Q ss_pred             cccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhChhH-------HHHHHHHHHHHHHHHhhH----HHhhhhhHHHHHH
Q 013991          318 LNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIM-------VARIAGVLTIPLLTSYPY----IAMLSGFGLAFLL  386 (432)
Q Consensus       318 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~  386 (432)
                      .|+.. ....+.+...+..++.+ ++.+++.||.++|+       -+.+++++..++++.+..    .....+.....++
T Consensus       305 ~G~~i-~~~~~~~~n~~~iii~~-pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~  382 (489)
T PRK10207        305 LGFSI-NPVSFQALNPFWVVVAS-PILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFI  382 (489)
T ss_pred             cceEE-CHHHHHhHhHHHHHHHH-HHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHH
Confidence            23322 12233334444454554 46678889988775       255666666666543321    1111111112334


Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHHHHh
Q 013991          387 NCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWFVK  428 (432)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~~  428 (432)
                      ....++.+.+.....|..++.+.+.+|++.+|.++|++++.+
T Consensus       383 i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~  424 (489)
T PRK10207        383 VLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQ  424 (489)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence            456677788888999999999999999999999999988654

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.93  E-value=1.4e-23  Score=186.46  Aligned_cols=337  Identities=16%  Similarity=0.166  Sum_probs=264.5

Q ss_pred             CchhHHHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHH
Q 013991           39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (432)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~  118 (432)
                      ++..+..+....++.++......+.+|.+.+.|+++..|      .+++..+++.++.+.+++.|++.+|+|+|+-++.+
T Consensus        11 ~~~~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~------a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lg   84 (422)
T COG0738          11 VKLAFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFE------ASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLG   84 (422)
T ss_pred             ceeHHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHH------HHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHH
Confidence            344566677778888888889999999999999999999      99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHh---hhhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhc
Q 013991          119 TASVVIFNTLFG---LSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (432)
Q Consensus       119 ~~~~~~~~~~~~---~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  194 (432)
                      +.++++++.++.   ...++..++++-++.|.|.+...+. .++++...++++..+.+++.+...++|.++||.+++.+.
T Consensus        85 L~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~li  164 (422)
T COG0738          85 LLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLI  164 (422)
T ss_pred             HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            999999999985   5567888999999999999999886 999999999999999999999999999999999999998


Q ss_pred             ccC----CcCCCcccccccccCccchHHHHHHHHHHHHHHHHHhhc--ccccCCCCCCCcchhhhHHHhhhhhhhhhhhh
Q 013991          195 QPA----EKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL--PETLHRHNDDDDSCDVSYDALESASAEVKEEE  268 (432)
Q Consensus       195 ~~~----~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (432)
                      ...    .+-+....|+... -..++.|+...+...++..+.....  |+.++...++.   +                 
T Consensus       165 ls~~~~~~~~~~~~~~~~~~-~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~~~~---~-----------------  223 (422)
T COG0738         165 LSGVALTMSAAQILAIKGAD-ASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAPSLG---A-----------------  223 (422)
T ss_pred             HhhhhhccCHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHhccCCcCCccccccc---c-----------------
Confidence            620    0001112222222 2236666666665555444333332  22221111110   0                 


Q ss_pred             ccCCCCccccccchhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHH
Q 013991          269 GREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLE  348 (432)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~  348 (432)
                       .+.....+++++|.++...+..+++-..+....++++.|..+.     .|.+..+.....+....+..+|+ +++.++.
T Consensus       224 -~~~~~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~-----~g~~~~~aa~~~s~~~~~~~vGR-Fig~~lm  296 (422)
T COG0738         224 -SGSAGLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEEL-----LGLNEQQAAYYLSFFWVGFMVGR-FIGSALM  296 (422)
T ss_pred             -cccchHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc-----CCccHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence             0011456789999999999999999999999999999999886     58899999999999999999998 5888888


Q ss_pred             HHhChhHHHHHHHHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccc
Q 013991          349 RILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVL  416 (432)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  416 (432)
                      +|+...|.+....+...+.++...+....       +.+....+.+.+.+..+|...+...+..|++.
T Consensus       297 ~~~~~~k~Laf~a~~~ill~~~~~l~~g~-------v~~~~l~~ig~F~simfPTIfslal~~l~~~t  357 (422)
T COG0738         297 SRIKPEKYLAFYALIAILLLLAVALIGGV-------VALYALFLIGLFNSIMFPTIFSLALKNLGEHT  357 (422)
T ss_pred             HHhCHHHHHHHHHHHHHHHHHHHHHhcCh-------HHHHHHHHHHHHhHHHHHHHHHHHHhccCccc
Confidence            89999999888877776666666555442       24455566777889999999999999998543

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.93  E-value=2.1e-23  Score=200.95  Aligned_cols=364  Identities=12%  Similarity=0.096  Sum_probs=235.5

Q ss_pred             hhHHHHHHHHHHhhccccchhhhHHHHHH-H--hcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhc-cCChHHHH
Q 013991           41 TELFSIWIIVLCTALPISSLFPFLYFMIK-D--FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKPVII  116 (432)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~l~  116 (432)
                      +.++.++...+...+..+...+.+|.+.+ +  +|.+..+      .+++.+.+.++..+++++.|+++|| +|||+++.
T Consensus        10 ~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~------ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~   83 (475)
T TIGR00924        10 KPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQ------AFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMV   83 (475)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHH------HHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHH
Confidence            45667777888888888888888886654 4  8999998      9999999999999999999999999 89999999


Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhccchhhH-Hhhhhhhcccch---hhhhhhhHHHHHHHHHHHHHHHHhh
Q 013991          117 MGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEH---QALGLSTVSTAWGIGLIIGPALGGF  192 (432)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~---r~~~~~~~~~~~~~g~~~g~~~~~~  192 (432)
                      ++.++.+++.++.+++++++.++++|.+.|++.|...+. .++++|++|+++   |+++.++.+.+.++|.++||.++++
T Consensus        84 ~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~  163 (475)
T TIGR00924        84 LGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGV  163 (475)
T ss_pred             HHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHH
Confidence            999999999999999988889999999999999888775 899999998754   8889999999999999999999999


Q ss_pred             hcccCCcCCCcccccccccCccchHHHHHHHHHHHHHHHHHhhcccccCCCCCCC---cchh-hhHHHh-----------
Q 013991          193 LAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDD---DSCD-VSYDAL-----------  257 (432)
Q Consensus       193 l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~---~~~~-~~~~~~-----------  257 (432)
                      +.+                ..+|+..+.+.++..++.++.....++..+..++++   ++++ ......           
T Consensus       164 l~~----------------~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (475)
T TIGR00924       164 IAE----------------NYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVF  227 (475)
T ss_pred             HHH----------------hcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHH
Confidence            987                334555556655444444333333332211111000   0000 000000           


Q ss_pred             hhh--h-hh-hh---------------hhhccCC-CCccccccchhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCC
Q 013991          258 ESA--S-AE-VK---------------EEEGREA-TPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGG  317 (432)
Q Consensus       258 ~~~--~-~~-~~---------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (432)
                      ...  . +. ..               +....++ ....+..|...+....+...++...+....+.++.+..+.....-
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~  307 (475)
T TIGR00924       228 FCAWLMHHVVIANILLMTVTLAVIIFFFRLAFKPRLDAVARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEM  307 (475)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc
Confidence            000  0 00 00               0000001 011111122233334444445555555555566666554311110


Q ss_pred             cccccchhhHHHHHHHHHHHHHHHHhH---HHHHHH-hChhHHH--HHHHHHHHHHHHHhhHHHhhh---hhHHHHHHHH
Q 013991          318 LNYSTQMVGEVLAITGFSLLVFQLSLY---PFLERI-LGPIMVA--RIAGVLTIPLLTSYPYIAMLS---GFGLAFLLNC  388 (432)
Q Consensus       318 ~g~s~~~~g~~~~~~~~~~~~~~~~~~---~~l~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  388 (432)
                      .++ ....+.+.+...+..++.+.++.   .++.|| .+.+...  .++.++..+++....+.....   ......++..
T Consensus       308 ~~~-~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~  386 (475)
T TIGR00924       308 LGM-SVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVL  386 (475)
T ss_pred             cce-EECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHH
Confidence            111 12366777777777777763322   234443 2223333  566777666666654321110   1123334566


Q ss_pred             HHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHHHH
Q 013991          389 ASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWFV  427 (432)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~  427 (432)
                      ..++.+.+.....|...++..+..|++.||+..|.+...
T Consensus       387 ~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~  425 (475)
T TIGR00924       387 IYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLA  425 (475)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            777888899999999999999999999999999998754

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00889 2A0110 nucleoside transporter

Probab=99.93  E-value=1.4e-23  Score=199.50  Aligned_cols=333  Identities=11%  Similarity=0.005  Sum_probs=224.4

Q ss_pred             HHHHHHHHhhccccchhhhHH-HHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCC-hHHHHHHHHHH
Q 013991           45 SIWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGR-KPVIIMGTASV  122 (432)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Gr-r~~l~~~~~~~  122 (432)
                      .+....++......+..|.++ ++.+++|.+..+      .|++.+++.++..++++++|.++||+|| |+++.++.++.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~------iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~   79 (418)
T TIGR00889         6 KLKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAE------IGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAG   79 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            345566667777777766665 666779999999      9999999999999999999999999965 77888888888


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHhhhccchhhH-Hhhh----h----hhcccchhhhhhhhHHHHHHHHHHHHHHHHhhh
Q 013991          123 VIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYA----C----EIFREEHQALGLSTVSTAWGIGLIIGPALGGFL  193 (432)
Q Consensus       123 ~~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i----~----~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  193 (432)
                      .++..+..+.++++.+++.|++.|++.+...+. .+..    .    |......|.+..|      .+|.++||.+++.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l  153 (418)
T TIGR00889        80 ALLLFFAAQVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLL  153 (418)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHh
Confidence            888888888899999999999999976655443 3332    2    2233334555544      46888899998877


Q ss_pred             cccCCcCCCcccccccccCccchHHHHHHHHHHHHHHHHHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhccCCC
Q 013991          194 AQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREAT  273 (432)
Q Consensus       194 ~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (432)
                      ..                ...| .++++.++..++..+..+.+||+++.+++++.  +.               ++..+.
T Consensus       154 ~~----------------~~~~-~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~--~~---------------~~~~~~  199 (418)
T TIGR00889       154 DI----------------ELSN-IQLYITAGSSALLGVFALTLPDIPVAKSTAKM--SI---------------KVMLGL  199 (418)
T ss_pred             cc----------------cchh-HHHHHHHHHHHHHHHHHhcCCCCCCCcccccc--CH---------------HHHhhh
Confidence            43                1112 23445555455544455677876432211110  00               000111


Q ss_pred             CccccccchhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCC--cccccchhhHHHHHHHHHHHHHHHHhHHHHHHHh
Q 013991          274 PKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGG--LNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL  351 (432)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~  351 (432)
                      ..+..+|+|+++...+..++..........+.+.|.++......  -+++....+...+...+..+++. +..+++.||+
T Consensus       200 ~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~-~~~g~l~dr~  278 (418)
T TIGR00889       200 DAFILFKNKRMAIFFFFSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFI-LTIPFFLKRF  278 (418)
T ss_pred             hHHHHhcCCCeeeHHHHHHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHh
Confidence            23456788887776666666555444555566666654200000  12345677999999888888887 5889999999


Q ss_pred             ChhHHHHHHHHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHHH
Q 013991          352 GPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWF  426 (432)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~  426 (432)
                      ++|+++.++.++..+.+..+.......  ..+..+++..++.+.+.+...+....++.+..|+++|+++.|.+++
T Consensus       279 g~r~~l~~~~~~~~v~~~l~~~~~~~~--~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~  351 (418)
T TIGR00889       279 GIKKVMLLSLVAWALRFGFFAYGDPEY--FGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTL  351 (418)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHcCcch--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence            999999999888777665554421111  1122344455566666666778888899999999999999999863

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=1.3e-25  Score=197.91  Aligned_cols=316  Identities=17%  Similarity=0.159  Sum_probs=232.2

Q ss_pred             HHHHHHHHhhccccchhhhHHHHHHHhcC--------------------------------------------Cccccch
Q 013991           45 SIWIIVLCTALPISSLFPFLYFMIKDFQI--------------------------------------------AKREEDI   80 (432)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------s~~~~~~   80 (432)
                      .+.+..+.+.+....+.|.+|.+..|.+.                                            .......
T Consensus        25 iv~ialllDnmL~~vivPiiP~~L~d~~~~p~~~~~~~~is~~~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~~~~~e  104 (464)
T KOG3764|consen   25 IVSIALLLDNMLYTVIVPIIPGYLYDIQAEPTIIQPFFPISTAPIPPGSMSSFSSLNISTESTNASAGKSPAEAISLDRE  104 (464)
T ss_pred             EEehhhhccCccceeeeccCccHHHHhccCCccCccccccccCCCCCccccceecccCCccccccccccCchhccCcccc
Confidence            55667777888888888888877665552                                            0000111


Q ss_pred             hhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhccchhhH-Hhhh
Q 013991           81 GSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYA  159 (432)
Q Consensus        81 ~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i  159 (432)
                      ..-+|++.+.+.+.+.+.+++.|.+.||+|+|-.+++|++.+..+++++++..++++++++|.+||+|.++..++ .+++
T Consensus       105 ~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsglaml  184 (464)
T KOG3764|consen  105 NTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLAML  184 (464)
T ss_pred             ccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHHHH
Confidence            223999999999999999999999999999999999999999999999999999999999999999999998887 9999


Q ss_pred             hhhcccch-hhhhhhhHHHHHHHHHHHHHHHHhhhcccCCcCCCcccccccccCccchHHHHHHHHHHHHHHHHHhhccc
Q 013991          160 CEIFREEH-QALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPE  238 (432)
Q Consensus       160 ~~~~~~~~-r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  238 (432)
                      +|.+|+++ |++++|+...+.++|..+||.+||.+.+                ..|.+.||++.+++.++-....+++-|
T Consensus       185 Ad~f~~d~er~~vmGialgfislG~lvgPpfGGilYe----------------~~Gk~aPFlVL~~v~Lld~~L~l~vi~  248 (464)
T KOG3764|consen  185 ADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYE----------------FAGKSAPFLVLAIVLLLDGALQLLVIE  248 (464)
T ss_pred             HHHcccchhhhHHHHHHHHHHhccceecCCcccchHh----------------hcCCcCcHHHHHHHHHHHHHHHHheeC
Confidence            99999765 7999999999999999999999999998                566788889998888875555444433


Q ss_pred             c-cCCCCCCCcchhhhHHHhhhhhhhhhhhhccCCCCccccccchhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCC
Q 013991          239 T-LHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGG  317 (432)
Q Consensus       239 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (432)
                      + ....++.                       .+..+.++++++|.++.........+.........++.|..+.     
T Consensus       249 p~~~~~~~~-----------------------~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~-----  300 (464)
T KOG3764|consen  249 PTEMDPDST-----------------------EQGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLET-----  300 (464)
T ss_pred             ccccCcccc-----------------------ccCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHh-----
Confidence            2 2222111                       1224677888999887766655555555555555666766665     


Q ss_pred             cccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhC--hhHHHHHHHHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHh
Q 013991          318 LNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG--PIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNL  395 (432)
Q Consensus       318 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (432)
                      +.-+.-+.|..+....+..+++. .+.+.+.||++  |......++++...++...++.....  ..|.......+..+.
T Consensus       301 m~~p~w~~G~~fLp~~~~y~ig~-~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~--~L~vp~~~l~~~i~~  377 (464)
T KOG3764|consen  301 MFTPGWEVGLAFLPASLSYAIGT-NLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIA--QLWVPNFGLGFGIGL  377 (464)
T ss_pred             ccCCCcceeeeecccccchhccC-chHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHH--HHhhhhHHHHHHHHH
Confidence            55344488998888899999987 68899999998  54555556666666566666665444  233333333343334


Q ss_pred             hhhhHHHHHHHH
Q 013991          396 LSVSIITGLFIL  407 (432)
Q Consensus       396 ~~~~~~~~~~~~  407 (432)
                      ..+...|....+
T Consensus       378 ~dasl~P~l~~l  389 (464)
T KOG3764|consen  378 ADASLIPTLGYL  389 (464)
T ss_pred             HHHHHhhhhHHh
Confidence            444444444443

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.93  E-value=1.9e-23  Score=198.05  Aligned_cols=335  Identities=13%  Similarity=0.130  Sum_probs=215.7

Q ss_pred             hhHHHHHHHHHHhhccccchhhhHHHH-HHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHH
Q 013991           41 TELFSIWIIVLCTALPISSLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (432)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~  119 (432)
                      +.++......++.........|.+|.+ .+++|.+..+      .|++.+++.++..+++++.|+++||+|||+.++.+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~   75 (396)
T TIGR00882         2 TNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTD------TGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWII   75 (396)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence            345566667777788888888888855 5568999999      999999999999999999999999999999998877


Q ss_pred             HHHHHHHHHHh---hh-----hhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHH
Q 013991          120 ASVVIFNTLFG---LS-----VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG  190 (432)
Q Consensus       120 ~~~~~~~~~~~---~~-----~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~  190 (432)
                      ...+++.....   ..     +....+++.|++.|++.+...+. ..+..|..+  ++++.++......++|.++||.++
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~  153 (396)
T TIGR00882        76 SGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIA  153 (396)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHH
Confidence            66655443321   11     12344566788888887776664 666666432  345567778888899999999999


Q ss_pred             hhhcccCCcCCCcccccccccCccchHHHHHHHHHHHHHHHHHhh-cccccCCCCCCCcchhhhHHHhhhhhhhhhhhhc
Q 013991          191 GFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFW-LPETLHRHNDDDDSCDVSYDALESASAEVKEEEG  269 (432)
Q Consensus       191 ~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (432)
                      +.+.+                 ++|+.++.+.+++.++..+..+. .||++++++ +.+   .    .+      .++++
T Consensus       154 g~l~~-----------------~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~----~~------~~~~~  202 (396)
T TIGR00882       154 GILFS-----------------IDPQIVFWLGSGFALILMLLLMFAKPKAPSSAT-VAN---A----LG------ANASA  202 (396)
T ss_pred             hhhhc-----------------cCchHHHHHHHHHHHHHHHHHHHhCCCCchhhh-hhc---c----cc------cccCC
Confidence            98764                 24555667776666654444443 333322110 000   0    00      00011


Q ss_pred             cCCCCccccccchhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHH
Q 013991          270 REATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLER  349 (432)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~  349 (432)
                      ++.++.++.+|||+++...+..+............++.|..+....  .+.+....|...+...+...++. ...+++.|
T Consensus       203 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~--~~~~~~~~g~~~~~~~i~~~~~~-~~~g~l~~  279 (396)
T TIGR00882       203 FSLKLALELFRQRKFWMFVLYVVGVACVYDVFDQQFANFFTSFFAT--PQQGTRVFGYVTTMGELLNALIM-FCAPLIIN  279 (396)
T ss_pred             CCHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cccchHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            1122456778888887666555555544445555566666543211  24566678888888888888876 58899999


Q ss_pred             HhChhHHHHHHHHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhH
Q 013991          350 ILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCH  423 (432)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~  423 (432)
                      |+++|+.+.++..+..+...+........      .+.+...+.+.+.............+..|++.+++..+.
T Consensus       280 r~g~~~~l~~~~~l~~l~~~~~~~~~~~~------~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~  347 (396)
T TIGR00882       280 RIGAKNALLIAGTIMSVRIIGSSFATTAL------EVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLI  347 (396)
T ss_pred             HhccchhHHHHHHHHHHHHHHHHhcCChH------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehH
Confidence            99999998888877776665544322211      123333444444333333444455666777777776554

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.93  E-value=1.3e-23  Score=200.63  Aligned_cols=336  Identities=12%  Similarity=0.078  Sum_probs=207.8

Q ss_pred             hhHHHHHHHHHHhhccccchhhhHHHH-HHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHH
Q 013991           41 TELFSIWIIVLCTALPISSLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (432)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~  119 (432)
                      +.++.+.+..++..+......+.+|.+ .+++|.+..+      .|++.+++.++..++++++|+++||+|||++++++.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~------~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~   83 (420)
T PRK09528         10 PNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTD------TGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWII   83 (420)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHH
Confidence            455666667777777777788888855 4559999999      999999999999999999999999999999998876


Q ss_pred             HHHHHHHHHHh---hhh-----hHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHH
Q 013991          120 ASVVIFNTLFG---LSV-----NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG  190 (432)
Q Consensus       120 ~~~~~~~~~~~---~~~-----~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~  190 (432)
                      .+.+++.....   .++     .....+++++..|.+.....+. ..+..+ . +++|++.++......++|..++|.++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~  161 (420)
T PRK09528         84 SGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIA  161 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHH
Confidence            66554433221   111     1111222333333332222222 233222 2 34567788888899999999999999


Q ss_pred             hhhcccCCcCCCcccccccccCccchHHHHHHHHHHHHHHHHHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhcc
Q 013991          191 GFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGR  270 (432)
Q Consensus       191 ~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (432)
                      +.+.+        .         +|+.++++.++..++.++..+..+++++++....++++.      +       +++.
T Consensus       162 g~l~~--------~---------~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-------~~~~  211 (420)
T PRK09528        162 GILFN--------I---------NPQINFWLGSGSALILLVLLFFAKPDAPSTAKVANALGA------N-------ASAV  211 (420)
T ss_pred             HHHHh--------c---------CchHhHHHHHHHHHHHHHHHhcccccccchhhhccchhc------c-------cccc
Confidence            99875        1         344455666666555444444443322221110000000      0       0000


Q ss_pred             CCCCccccccchhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHH
Q 013991          271 EATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI  350 (432)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~  350 (432)
                      ..+..++.+|+|+++...+...............+|.|..+..  .+.+.+..+.|.+.+...+...++. +..+++.||
T Consensus       212 ~~~~~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~-~~~g~l~dr  288 (420)
T PRK09528        212 SLKDALALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFF--ATPEQGTRVFGYLNSFQVFLEALIM-FFAPFIINR  288 (420)
T ss_pred             cHHHHHHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHH--hccCcchHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            1112345677777666555444444444444445666654321  1135566788999998888888887 689999999


Q ss_pred             hChhHHHHHHHHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhH
Q 013991          351 LGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCH  423 (432)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~  423 (432)
                      +++|+.+..+.++..+...++++.....      .+.....+.+.......+....++.+..|++.+++.++.
T Consensus       289 ~g~~~~~~~~~~l~~~~~~l~~~~~~~~------~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  355 (420)
T PRK09528        289 IGAKNALLLAGTIMAVRIIGSGFATGPL------EVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLV  355 (420)
T ss_pred             hCcchhhHHHHHHHHHHHHHHHhcccHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeee
Confidence            9999998888877777666655433221      223334444445555556667788888999998887654

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.92  E-value=3.3e-22  Score=191.47  Aligned_cols=344  Identities=13%  Similarity=0.112  Sum_probs=224.1

Q ss_pred             hhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHhhh
Q 013991           53 TALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS  132 (432)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~  132 (432)
                      ..+........++.+.+|+|.++.       ..|+.+...++..+..++.|+++|.+|||.+++.+.++..++++.++.+
T Consensus        56 ~~~~~~~~a~~l~~I~~diG~~~~-------~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA  128 (599)
T PF06609_consen   56 AYFVLVLPASILPYINADIGGSDN-------WSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATA  128 (599)
T ss_pred             HHHHHhccHHHHHHHHHhcCCCcc-------chHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcC
Confidence            344455556777899999998755       6899999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhhhccchhhHHhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCcCCCcccccccccC
Q 013991          133 VNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGK  212 (432)
Q Consensus       133 ~~~~~l~~~r~~~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~  212 (432)
                      +|...++.+..+.|+|.|........++|..|.|.|....++...........+|.++..+..       .-+|||.|  
T Consensus       129 ~~~~~~iag~~l~GvgaG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~-------~~~WRw~~--  199 (599)
T PF06609_consen  129 QNMNTFIAGMVLYGVGAGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAA-------HSGWRWIF--  199 (599)
T ss_pred             CcHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhcc-------CCCcchHH--
Confidence            999999999999999987777667779999999999988877776666666677888776665       34554444  


Q ss_pred             ccchHHHHHHHHHHHHHHHH-H-hhcccccCCCCCCCcchhhhHHHhhh-------------------------hhhhh-
Q 013991          213 FPYFLPCLCISLFAFGVTIA-A-FWLPETLHRHNDDDDSCDVSYDALES-------------------------ASAEV-  264 (432)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~-~-~~~~e~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~-  264 (432)
                             ++.++...+.++. . +..|++.+..+.++...+....++|-                         ..++. 
T Consensus       200 -------~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~  272 (599)
T PF06609_consen  200 -------YIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAH  272 (599)
T ss_pred             -------HHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcc
Confidence                   4444443333222 2 23333221111111111111111110                         00110 


Q ss_pred             -----------------hhh--hccCCCCccccccc-hhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCccccc--
Q 013991          265 -----------------KEE--EGREATPKKSLLKN-WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYST--  322 (432)
Q Consensus       265 -----------------~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~--  322 (432)
                                       .|.  ..+++....+++|+ |.+....+..++....+.+...++|......     ++-++  
T Consensus       273 VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~v-----f~~d~~~  347 (599)
T PF06609_consen  273 VIAPLVIGFVLLVAFVVWEWFGAPKDPLFPHRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNV-----FGSDPIS  347 (599)
T ss_pred             chhhHHHHHHHHHHHHHhhhhccCCCCcCCHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----ccCCCcc
Confidence                             122  22456677788887 4555555666666666777777888765554     33333  


Q ss_pred             -chhhHHHHHHHHHHHHHHHHhHHHHHHHhChhH-HHHHHHHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhH
Q 013991          323 -QMVGEVLAITGFSLLVFQLSLYPFLERILGPIM-VARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSI  400 (432)
Q Consensus       323 -~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (432)
                       ...+......+.+..++. .+.+.+.++.++.| .+..+.+++.+++-.+........ ..++   ...++.+++.+..
T Consensus       348 ~~~~~~~s~~~~fg~~~g~-~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~-~~~i---~~~~l~g~giG~~  422 (599)
T PF06609_consen  348 ITEIGWISSPVGFGSCAGA-VILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNK-NAAI---AFLVLAGFGIGGI  422 (599)
T ss_pred             cceeehhhhhHHHHHHHHH-HHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCCCc-chHH---HHHHHHHHhHHHH
Confidence             356777777777777776 46667777666544 444555555544444433322221 2221   2233444455555


Q ss_pred             HHHHHHHHhccccccchhhhhhHHHHHhh
Q 013991          401 ITGLFILQNRAVVRVLTYTLSCHFWFVKL  429 (432)
Q Consensus       401 ~~~~~~~~~~~~p~~~~g~~~~~~~~~~~  429 (432)
                      ........+-..|++..|+++|+....|.
T Consensus       423 ~~~~~~~~ql~~p~~~ig~a~gL~~s~R~  451 (599)
T PF06609_consen  423 LVPAIVIAQLIVPDEDIGTATGLTGSIRS  451 (599)
T ss_pred             HHHHHHeeEeeeCchHHHHHHHHHHHHHH
Confidence            55566666778899999999998887774

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.91  E-value=3.5e-22  Score=191.12  Aligned_cols=354  Identities=16%  Similarity=0.110  Sum_probs=255.4

Q ss_pred             chhHHHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHH
Q 013991           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (432)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~  119 (432)
                      |-..+..++......-.......+.+.++++++.+..+      ++|+.++......+.+|+.+.+.||+|.|.+.++|.
T Consensus        45 WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~------~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~  118 (509)
T KOG2504|consen   45 WVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQ------IAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGG  118 (509)
T ss_pred             eeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccH------HHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHH
Confidence            33333444444444444455567789999999999999      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHH-HHHhhhccchhh-HHhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccC
Q 013991          120 ASVVIFNTLFGLSVNFWMAVLTR-FLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (432)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~l~~~r-~~~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  197 (432)
                      ++..++.++..+++++|++++.. ++.|+|.|+... ...++..+ .+++|+.+.|+...+.++|.++-|.+...+.+  
T Consensus       119 ~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~Y-F~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~--  195 (509)
T KOG2504|consen  119 LVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTY-FEKKRALATGIAVSGTGVGTVVFPPLLKYLLS--  195 (509)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhH-hHHHHHHHHhhhhccCCcceeeHHHHHHHHHH--
Confidence            99999999999999999988876 778899888655 56667655 46789999999999999999999999999998  


Q ss_pred             CcCCCcccccccccCccchHHHHHHHHHHHHHHHHHhhccc-ccCCCCC--------------------CC--cchhhhH
Q 013991          198 EKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPE-TLHRHND--------------------DD--DSCDVSY  254 (432)
Q Consensus       198 ~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-~~~~~~~--------------------~~--~~~~~~~  254 (432)
                                    +++||...+..+.+.+-..+....+++ +++....                    +.  .+.....
T Consensus       196 --------------~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (509)
T KOG2504|consen  196 --------------KYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLK  261 (509)
T ss_pred             --------------HhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhccccccccccccccccccccCCCCCC
Confidence                          445555556666665554444443333 2221000                    00  0000000


Q ss_pred             H----Hhhhhhhhhhhhh--ccCCCC---ccccccchhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchh
Q 013991          255 D----ALESASAEVKEEE--GREATP---KKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMV  325 (432)
Q Consensus       255 ~----~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~  325 (432)
                      +    ..+..++...+.+  ..+...   .+++++++.++...+...+..........++|.|..+      .|++..++
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~------~g~~~~~a  335 (509)
T KOG2504|consen  262 KLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKS------LGLSSNDA  335 (509)
T ss_pred             cccccchhhhhhCCccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh------cCCChhhh
Confidence            0    0000000000001  111112   3688999999999888888888888888888888875      69999999


Q ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHHhC--hhHHHHHHHHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHH
Q 013991          326 GEVLAITGFSLLVFQLSLYPFLERILG--PIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITG  403 (432)
Q Consensus       326 g~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (432)
                      +.++++.++...+++ ++.+++.|+..  ++.+..++.+..++.....++.....      .+.....+.+++.+.....
T Consensus       336 a~l~Siigi~~i~gR-i~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~------~l~~~~~~fG~~~g~~~~l  408 (509)
T KOG2504|consen  336 AFLLSIIGVSDIIGR-IILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYV------GLIVFSILFGFCVGSFSSL  408 (509)
T ss_pred             HHHHHHHHHhhhhhh-hhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHH------HHHHHHHHHHHHHHHHHHH
Confidence            999999999999998 59999999977  44555566666666665555554433      4555566667777777767


Q ss_pred             HHHHHhccccccchhhhhhHHHHHhh
Q 013991          404 LFILQNRAVVRVLTYTLSCHFWFVKL  429 (432)
Q Consensus       404 ~~~~~~~~~p~~~~g~~~~~~~~~~~  429 (432)
                      ....+.+.++.++-..++|.....+-
T Consensus       409 ~~~i~~~~~g~~~l~~a~Gl~l~~~g  434 (509)
T KOG2504|consen  409 TPVILVDLVGLEKLSNAYGLLLLFQG  434 (509)
T ss_pred             HHHHHHHHcChhhcchHHHHHHHHhH
Confidence            77788999999999999999887654

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.91  E-value=5.5e-22  Score=182.58  Aligned_cols=357  Identities=12%  Similarity=0.034  Sum_probs=225.8

Q ss_pred             chhHH-HHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHH
Q 013991           40 ITELF-SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (432)
Q Consensus        40 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~  118 (432)
                      |+... .+++..|+.-+ ........|++.+++|+++++.     .|.+.+++..+++++.++.|+++||+|.|+++.++
T Consensus        25 W~~~~~~lC~fGF~~e~-R~n~s~a~p~L~~elglT~~qv-----~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~   98 (511)
T TIGR00806        25 WRVLVLYLCFYGFMAQF-RPGESFITPYLLTVLNFTEETV-----TNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQ   98 (511)
T ss_pred             hhHHHHHHHHHHHHHHh-hchHHHHHHHHHHHcCCCHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence            44433 34444443333 4556667789999999998762     68999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHhhhccchhhHHhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCC
Q 013991          119 TASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE  198 (432)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~  198 (432)
                      .+.+++..++.++++++..+.+.|++.|++.|...+...++..++|+++|+++.++...+..+|.++++++++++.    
T Consensus        99 ~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~----  174 (511)
T TIGR00806        99 ALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARIAYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV----  174 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence            9999999999999999999999999999999888855999999999999999999999999999999999999944    


Q ss_pred             cCCCcccccccccCccchHHHHHHHHHHHHHHHHHhhcccccCC---CCCCCcchhhhHHHhhhhhhh----hhh-hh--
Q 013991          199 KYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHR---HNDDDDSCDVSYDALESASAE----VKE-EE--  268 (432)
Q Consensus       199 ~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~---~~~~~~~~~~~~~~~~~~~~~----~~~-~~--  268 (432)
                          .+||++..      ...++......++++..+++|..++.   ++++..+.... .+.++...+    ..+ .+  
T Consensus       175 ----s~gWr~y~------~Ln~Isl~s~~~a~~~a~~LP~~~~sl~f~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  243 (511)
T TIGR00806       175 ----TLGWISYS------TLNIISLVFMTFSVFLALFLKRPKRSLFFNRLEDVRGALP-CELDQMVPGPGGKLEDYLGTC  243 (511)
T ss_pred             ----hcCchhHH------HHHHHHHHHHHHHHHHHHhCCCCchhhhhccccccccccc-cccccCCCCCccccchhhhhh
Confidence                46776533      33344444444566666778844331   11110000000 000000000    000 00  


Q ss_pred             -----ccCCCCccccccchhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHh
Q 013991          269 -----GREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSL  343 (432)
Q Consensus       269 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~  343 (432)
                           +.-....++..+|+.++.-.+-+.+-...+....++.........     +-.....|..-++..+.+++.. +.
T Consensus       244 ~~~~~~~l~~~~~~~y~n~~vl~WSlWwa~a~~g~~qv~~Y~Q~LW~~v~-----~~~~~yNG~veA~~tllga~~a-~~  317 (511)
T TIGR00806       244 RDSFLVRMLSELVTIYRNPQLLLWSLWWVFNSAGYYLITYYVHTLWGTLD-----ESLNKYNGAVDAASTLLGAITS-FI  317 (511)
T ss_pred             hhHHHHHHHHHHHHHhcCcchhhhhHHHHHHhhHHHHHHHHHHHHHHHcC-----CCccccCCHHHHHHHHHHHHHH-HH
Confidence                 001122334456666555444443333332222222221111110     1011256777777777777777 47


Q ss_pred             HHHHHHHhChhHHHHHHHHHH--HHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhh
Q 013991          344 YPFLERILGPIMVARIAGVLT--IPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLS  421 (432)
Q Consensus       344 ~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~  421 (432)
                      .+++..++.+...+.++....  +..++++.+..+.      ++.++..++.........+....-+++...++.-|-+.
T Consensus       318 ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t~~I------w~~Y~~yvlf~~~y~flitia~~~iA~~L~~~~~aLvF  391 (511)
T TIGR00806       318 AGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQSHDI------WVLYVTYVLFRGIYQFLVPIATFQIASSLSKELCALVF  391 (511)
T ss_pred             HHhhcCCchhhHHHHHHHHHHHHHHHhhhhhcccch------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceEEEE
Confidence            777755554433444333322  2223333322222      24555666666677777788888888888888878888


Q ss_pred             hHHHHHhh
Q 013991          422 CHFWFVKL  429 (432)
Q Consensus       422 ~~~~~~~~  429 (432)
                      |+..|+-+
T Consensus       392 GiNtfvAl  399 (511)
T TIGR00806       392 GINTFVAT  399 (511)
T ss_pred             ecHHHHHH
Confidence            88877654

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.91  E-value=1.9e-22  Score=194.04  Aligned_cols=326  Identities=16%  Similarity=0.112  Sum_probs=219.5

Q ss_pred             ccchhhhH-HHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhc----cCCh-HHHHHHHHHHHHHHHHHh
Q 013991           57 ISSLFPFL-YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR----YGRK-PVIIMGTASVVIFNTLFG  130 (432)
Q Consensus        57 ~~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr----~Grr-~~l~~~~~~~~~~~~~~~  130 (432)
                      .....+.+ +++.+++|+++.+      +|++.++..+..++..|+.|+++||    +||| +.++.+....+++.+++.
T Consensus        15 ~~~~~~~l~~~~~~~~g~s~~~------~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~   88 (437)
T TIGR00792        15 FAIVSTYLLFFYTDVLGLSAAF------VGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLF   88 (437)
T ss_pred             HHHHHHHHHHHHHHccCCCHHH------HHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHH
Confidence            34444444 5677889999999      9999999999999999999999997    6774 467778888888887776


Q ss_pred             hhhh------HHHHHHHHHHHhhhccchhh-HHhhhhhhc-ccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCcCCC
Q 013991          131 LSVN------FWMAVLTRFLLGSLNGLLGP-IKAYACEIF-REEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPN  202 (432)
Q Consensus       131 ~~~~------~~~l~~~r~~~G~~~g~~~~-~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~  202 (432)
                      ..++      ...+++.+++.+++.+...+ ..++..|.. ++++|++..++.+.+..+|..+++.+.+.+....++.. 
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~-  167 (437)
T TIGR00792        89 TTPDFSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGD-  167 (437)
T ss_pred             hCCCCCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-
Confidence            6543      45667778888887776554 488888887 57899999999999988988888777666654111000 


Q ss_pred             cccccccccCccchHHHHHHHHHHHHHH-HHHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhccCCCCccccccc
Q 013991          203 LFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKN  281 (432)
Q Consensus       203 ~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (432)
                              ...+|+.++.+.+++.++.. +..+..||+++..+++++++.                  +.....+.++++
T Consensus       168 --------~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~------------------~~~~~~~~l~~~  221 (437)
T TIGR00792       168 --------DKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKNIEKKL------------------SLKQIFKALFKN  221 (437)
T ss_pred             --------ccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCcccccCC------------------CHHHHHHHHhCC
Confidence                    13457776677776665543 334556765422111000000                  001134567888


Q ss_pred             hhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhChhHHHHHHH
Q 013991          282 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG  361 (432)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  361 (432)
                      |+++...+..++..........+.+.|.+..     ++ ++...+.+.....++.+++. ++.+++.||+++|+....+.
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~i~~ii~~-~~~~~l~~r~g~~~~~~~~~  294 (437)
T TIGR00792       222 DQLLILCLAYLFYNLAFNIKNGVQVYYFTYV-----LG-DPELFSYMGSIAIVAGLIGV-LLFPRLVKKFGRKILFAGGI  294 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcchhheeEeee-----cC-ChHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCcHHHHHHHH
Confidence            9888877777666666555554545444432     34 45566667777777777776 68899999999999998888


Q ss_pred             HHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcccc-------ccchhhhhhHHHHH
Q 013991          362 VLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVV-------RVLTYTLSCHFWFV  427 (432)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~g~~~~~~~~~  427 (432)
                      .+..++.+.+.+..  .+  . ....+...+.+++.+...+..+++.+|..|       ++.+|+++|.+.+.
T Consensus       295 ~~~~~~~~~~~~~~--~~--~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~  362 (437)
T TIGR00792       295 LLMVLGYLIFFFAG--SN--L-PLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFV  362 (437)
T ss_pred             HHHHHHHHHHHHcc--hh--H-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHH
Confidence            77776665554332  11  1 123334445556666777888888888775       45578888887664

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.91  E-value=4e-21  Score=181.77  Aligned_cols=336  Identities=12%  Similarity=0.009  Sum_probs=217.4

Q ss_pred             HHHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHH--HHHHhHHHHHHHHhhhh-hhhccCChHHHHHHH
Q 013991           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYV--GSSFMFGRALTSVFWGL-VADRYGRKPVIIMGT  119 (432)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~--~s~~~~~~~~~~~~~G~-l~dr~Grr~~l~~~~  119 (432)
                      +..+...++.+++..+...|.+|.+.++.|.+.++      +|++  .+...+...+.+|+++. ..||+||||..++.+
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~------iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~   76 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTA------LAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPM   76 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHH
Confidence            45566778889999999999999999999999999      9997  46778888888888854 799999998876555


Q ss_pred             HHH-HHHHHHHh---hhhh-HHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhh
Q 013991          120 ASV-VIFNTLFG---LSVN-FWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL  193 (432)
Q Consensus       120 ~~~-~~~~~~~~---~~~~-~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  193 (432)
                      .+. .+.....+   ...+ ...++..-.+.++..+...+. .++..|..++++++...+....+..+|.++|+...+++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l  156 (390)
T TIGR02718        77 QCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVL  156 (390)
T ss_pred             HHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            332 22222222   1222 223333444444555555554 77788888888888888888888889999999888888


Q ss_pred             cccCCcCCCcccccccccCccchHHHHHHHHHHHHHHHHHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhccCCC
Q 013991          194 AQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREAT  273 (432)
Q Consensus       194 ~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (432)
                      .+                ..+|+.++.+.+++.++..+..++++|++++++++++  +                   ...
T Consensus       157 ~~----------------~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~~~~~~~--~-------------------~~~  199 (390)
T TIGR02718       157 FG----------------KFGQRPAFLLVACVPLASLVCVLWLKDRAVASPEAPL--A-------------------RRA  199 (390)
T ss_pred             HH----------------HhCHHHHHHHHHHHHHHHHHHHHHcCCCCcCccccch--h-------------------hHH
Confidence            87                4556666677777766655444555443221111000  0                   011


Q ss_pred             CccccccchhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhCh
Q 013991          274 PKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGP  353 (432)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~  353 (432)
                      ..++.+|+|.++......++..........+.+.|..+      .|++++++|.+....+....+.+.++.+++.||+++
T Consensus       200 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~------~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~  273 (390)
T TIGR02718       200 SLFRFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVD------AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGL  273 (390)
T ss_pred             HHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHh------cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhH
Confidence            34567788888777777777766666777777777765      489999999998887764444333689999999999


Q ss_pred             hHHHHHHHHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccc-cchhhhhhHHHHH
Q 013991          354 IMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVR-VLTYTLSCHFWFV  427 (432)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~g~~~~~~~~~  427 (432)
                      ++.+..+..+..+.........................+.++..+...+.......+..++ +.+|+.++.....
T Consensus       274 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  348 (390)
T TIGR02718       274 WRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQST  348 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence            9988877665533222221111110000011122222333334455556666666666665 7888888776644

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.90  E-value=2.9e-22  Score=174.72  Aligned_cols=354  Identities=14%  Similarity=0.045  Sum_probs=233.6

Q ss_pred             CchhHHHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHH
Q 013991           39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (432)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~  118 (432)
                      ++.........+.-..+.........|......|.+..+      ..+++.....+..+++..+|..+|++|||+.+.+.
T Consensus        76 q~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q------~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T  149 (528)
T KOG0253|consen   76 QWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQ------APLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLT  149 (528)
T ss_pred             hhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhh------hhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhh
Confidence            344444444455555555555556667778888988888      99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHhhhccchhhHHhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCC
Q 013991          119 TASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE  198 (432)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~  198 (432)
                      ....++..++.+.++|+..+++.|.+.|+|.|......++-.|..|..+|...+-+. ..+.+|.++...++.....   
T Consensus       150 ~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~---  225 (528)
T KOG0253|consen  150 FLVTGVFGVISGASPNFASLCVFRALWGFGVGGLPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMS---  225 (528)
T ss_pred             HHHHHHHHHhhcCCCCeehhhHHHHHHhccCCCccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHH---
Confidence            999999999999999999999999999999887333488888999999999887777 8999999999999998887   


Q ss_pred             cCCCcccccccccCccchHHHHHHHHHHHHHHHHHhhcccccCCCCCCCcchhhhHHHhhhh------------------
Q 013991          199 KYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESA------------------  260 (432)
Q Consensus       199 ~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~------------------  260 (432)
                          .+|||+.+         .....+..+.....+++||+|+....+.++.++.. .+++.                  
T Consensus       226 ----~~gwr~~l---------~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAle-tL~kiArmNg~qlplgvl~~s~~  291 (528)
T KOG0253|consen  226 ----NFGWRYLL---------FTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALE-TLHKIARMNGKQLPLGVLESSAI  291 (528)
T ss_pred             ----hhhHHHHH---------HHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHH-HHHHHHHhcCCCCCcceeeeehh
Confidence                56666554         56666666677778899999998766665554432 11100                  


Q ss_pred             --hhhh----hh----hhccCCCCccccccchhHHH---HHHHHHHHHHHhhhHHHHHHhhhcCCCcCCC----------
Q 013991          261 --SAEV----KE----EEGREATPKKSLLKNWPLMS---SIIVYCVFSLHDMAYSEIFSLWANSPKKLGG----------  317 (432)
Q Consensus       261 --~~~~----~~----~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  317 (432)
                        +++.    .+    ..++.......++...-.+.   ....++...+.+++..-+.....+.......          
T Consensus       292 ~~~e~e~~~~~~~~~~a~ke~rg~~~nLlsp~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e  371 (528)
T KOG0253|consen  292 DRQEQEESDLDDSKSSAAKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELE  371 (528)
T ss_pred             hhhhhhhhchhhhhhccccccccchHhhcChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHH
Confidence              0000    00    01112223334443222222   2222222223333322222222222110000          


Q ss_pred             c----ccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhChhHHHHHHHHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHH
Q 013991          318 L----NYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVK  393 (432)
Q Consensus       318 ~----g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (432)
                      .    ..+...--.=..+.....+.|. ++.+++.||+|||+.+....+++.+..+++.......      ...+..+..
T Consensus       372 ~~~~c~~s~~~dYrdllitslaefPGl-LIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn------~~tvllf~a  444 (528)
T KOG0253|consen  372 TRANCPLSVAKDYRDLLITSLAEFPGL-LITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRN------AYTVLLFTA  444 (528)
T ss_pred             hhhcCCccchhHHHHHHHHHHhhCCch-hHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcc------hhHHHHHHH
Confidence            0    0111111112334456666775 6899999999999999999988877766654433222      122233334


Q ss_pred             HhhhhhHHHHHHHHHhccccccchhhhhhH
Q 013991          394 NLLSVSIITGLFILQNRAVVRVLTYTLSCH  423 (432)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~  423 (432)
                      -++..+.+.+.+.+..|..|+..|++..|.
T Consensus       445 rafisg~fqvaYvYtPEVyPTavRatgvGt  474 (528)
T KOG0253|consen  445 RAFISGAFQVAYVYTPEVYPTAVRATGVGT  474 (528)
T ss_pred             HHHHhchheEEEEecCcccchhhhhcchhh
Confidence            446667778899999999999999876553

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.89  E-value=1.1e-20  Score=183.32  Aligned_cols=359  Identities=13%  Similarity=0.075  Sum_probs=215.4

Q ss_pred             hhHHHHHHHHHHhhccccchhhhHH-HHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhc-cCChHHHHHH
Q 013991           41 TELFSIWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKPVIIMG  118 (432)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~l~~~  118 (432)
                      +.++.++...+...+..+...+.++ ++.+++|.+..+      .+++.+.+........++.|+++|| +|||+.+.++
T Consensus        21 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~------a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g   94 (500)
T PRK09584         21 KAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEAD------SITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLG   94 (500)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence            4466667777777777777777776 556889999988      7888887776666667899999999 5999999999


Q ss_pred             HHHHHHHHHHHhhhh-hHHHHHHHHHHHhhhccchhhH-Hhhhhhhcccch--hhhhhhhHHHHHHHHHHHHHHHHhhhc
Q 013991          119 TASVVIFNTLFGLSV-NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEH--QALGLSTVSTAWGIGLIIGPALGGFLA  194 (432)
Q Consensus       119 ~~~~~~~~~~~~~~~-~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~g~~~~~~l~  194 (432)
                      .++.+++..++++++ +.+.++++|+++|++.|...+. .+++.|++|+++  |..++++++.+.++|..+||.+++++.
T Consensus        95 ~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~  174 (500)
T PRK09584         95 AIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLA  174 (500)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999988874 5667778899999998887775 889999998643  456888889999999999999999998


Q ss_pred             ccCCcCCCcccccccccCccchHHHHHHHHHHHHHHHH----HhhcccccCCCCCC-CcchhhhH------------HH-
Q 013991          195 QPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA----AFWLPETLHRHNDD-DDSCDVSY------------DA-  256 (432)
Q Consensus       195 ~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~e~~~~~~~~-~~~~~~~~------------~~-  256 (432)
                      +       .+||         +..+.+.++..++.++.    ...++|..+..+.+ .+......            .. 
T Consensus       175 ~-------~~g~---------~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (500)
T PRK09584        175 A-------KYGW---------SVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWL  238 (500)
T ss_pred             H-------hhCH---------HHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHH
Confidence            8       4444         44445555433332222    22334432111111 11111000            00 


Q ss_pred             hhhhhhhhh----------hhhccCCCCccccccchhHHHHHHHHHHHHHHhhhHHHHHHhhhcC----CCcCCCccccc
Q 013991          257 LESASAEVK----------EEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANS----PKKLGGLNYST  322 (432)
Q Consensus       257 ~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~g~s~  322 (432)
                      ..+......          ...........+.-|++ .+.... .++....+.......+.++..    .......|+. 
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~-  315 (500)
T PRK09584        239 LHNQEIARMALGVVALGIVVIFGKEAFAMKGAARRK-MIVAFI-LMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIA-  315 (500)
T ss_pred             HhcchHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHH-HHHHHH-HHHHHHHHHHHHHHhccHHHHHHHHhccccccceE-
Confidence            000000000          00000000001111222 222211 112222222222233332221    1000001211 


Q ss_pred             chhhHHHHHHHHHHHHHHHHhH----HHHHHHhChhHHHHHHHHHHHHHHHHhhHHHhhh---hhHHHHHHHHHHHHHHh
Q 013991          323 QMVGEVLAITGFSLLVFQLSLY----PFLERILGPIMVARIAGVLTIPLLTSYPYIAMLS---GFGLAFLLNCASVVKNL  395 (432)
Q Consensus       323 ~~~g~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  395 (432)
                      ...+.+.+...+..++.. ++.    +++.||.+..+.+.+++++.+++++.+.......   +.....+.....++.++
T Consensus       316 i~~~~~~s~n~i~iil~~-p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~  394 (500)
T PRK09584        316 VEPEQYQALNPFWIMIGS-PILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSI  394 (500)
T ss_pred             ECHHHHHHHhHHHHHHHH-HHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH
Confidence            223444555554544444 333    4555555566777788888888877766554321   11112245666777888


Q ss_pred             hhhhHHHHHHHHHhccccccchhhhhhHHH
Q 013991          396 LSVSIITGLFILQNRAVVRVLTYTLSCHFW  425 (432)
Q Consensus       396 ~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~  425 (432)
                      +.....|...+++.+..|++.||.+.|.++
T Consensus       395 ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~  424 (500)
T PRK09584        395 GELMISGLGLAMVAQLVPQRLMGFIMGSWF  424 (500)
T ss_pred             HHHHHhHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            999999999999999999999999999775

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.89  E-value=5.4e-21  Score=187.67  Aligned_cols=318  Identities=17%  Similarity=0.133  Sum_probs=213.7

Q ss_pred             HHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhh
Q 013991           69 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSL  148 (432)
Q Consensus        69 ~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~  148 (432)
                      +.+..+...      ..+..+++.+|..+|++++|+++||+|||++++.++++..++.++.++++|++.+++.|++.|++
T Consensus       111 ~~~c~~~~~------~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~  184 (521)
T KOG0255|consen  111 NLVCDSSTL------VALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFF  184 (521)
T ss_pred             ceeeCcHhH------HHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh
Confidence            445556655      88999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             ccchhh-HHhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCcCCCcccccccccCccchHHHHHHHHHHH
Q 013991          149 NGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAF  227 (432)
Q Consensus       149 ~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~  227 (432)
                      .+.... ...+++|++++++|+.+..+ ......+..+++..++++..                  +||..+++..++.+
T Consensus       185 ~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~------------------~Wr~~~~~~~~~~~  245 (521)
T KOG0255|consen  185 GSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR------------------DWRWLFWIISIPSG  245 (521)
T ss_pred             ccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh------------------hHHHHHHHHHHHHH
Confidence            666655 59999999999999999999 77777778888888888864                  35555577777777


Q ss_pred             HHHHHHhhcccccCCCCCCCcchhhhH--HHhhhh-----h------hh--hhhhh---ccCCCCccccccchhHHHHHH
Q 013991          228 GVTIAAFWLPETLHRHNDDDDSCDVSY--DALESA-----S------AE--VKEEE---GREATPKKSLLKNWPLMSSII  289 (432)
Q Consensus       228 ~~~~~~~~~~e~~~~~~~~~~~~~~~~--~~~~~~-----~------~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~  289 (432)
                      +.++..++.||++++...+.+.++..+  ++..+.     .      ..  ..+.+   .+.+.....+++.+++....+
T Consensus       246 ~~~~~~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~  325 (521)
T KOG0255|consen  246 LFLLLWFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTL  325 (521)
T ss_pred             HHHHHHHccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHH
Confidence            666666666799998766554432221  111100     0      00  00001   112234667777776544444


Q ss_pred             HHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhChhHHHHHHHHHHHHHHH
Q 013991          290 VYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLT  369 (432)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  369 (432)
                      ...+..+.......-++      ....++|.+.   .......+....... ...+...++.|||.....+..+..++++
T Consensus       326 ~~~~~~~~~~~~y~gl~------~~~~~lg~~~---~~~~~~~~~~~~p~~-~~~~~~~~~~gR~~~~~~~~~~~~~~~~  395 (521)
T KOG0255|consen  326 YLLFIWFVFSLVYYGLS------LNVSGLGGNI---YLNFTLSGLVELPAY-FRNGLLLPEFGRRPPLFLSLFLAGIGLL  395 (521)
T ss_pred             HHHHHHHHHhHHHHhhh------hhhhhcCchH---HHHHHHHHHHHhhHH-HHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            33333322111111111      1111133332   223333333444443 4667888999999999999999999888


Q ss_pred             HhhHHHhhhhh-HHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHH
Q 013991          370 SYPYIAMLSGF-GLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFW  425 (432)
Q Consensus       370 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~  425 (432)
                      ...+....... .+++..    .+..++....+...+...+|..|+..|..+.+...
T Consensus       396 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~  448 (521)
T KOG0255|consen  396 LFGWLPDDLGGWLHWILP----LLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAIS  448 (521)
T ss_pred             HHHHhhccchhHHHHHHH----HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence            88877655431 122222    22233444455566889999999999987766554

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.88  E-value=1.6e-26  Score=223.13  Aligned_cols=362  Identities=17%  Similarity=0.209  Sum_probs=224.6

Q ss_pred             HHHHHhhccccchhhhHHHHH--HHhcCCccccc---hhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHH
Q 013991           48 IIVLCTALPISSLFPFLYFMI--KDFQIAKREED---IGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV  122 (432)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~~~~---~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~  122 (432)
                      ++.+..+++........+...  .++..+..+.+   .....++..+...++..+|+++.|.++||+|||+.+.++.++.
T Consensus         7 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~   86 (451)
T PF00083_consen    7 LGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLM   86 (451)
T ss_pred             HHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhccccccccccccccccccccccccccc
Confidence            344666666665555554333  23333332211   2244789999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhh---hHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCC
Q 013991          123 VIFNTLFGLSV---NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE  198 (432)
Q Consensus       123 ~~~~~~~~~~~---~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~  198 (432)
                      .++.++.++++   +++.+.++|++.|++.|...+. ..++.|..|+++|++..++.+.+..+|..++..++..+...  
T Consensus        87 ~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~--  164 (451)
T PF00083_consen   87 IIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYY--  164 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--
Confidence            99999999999   9999999999999998887765 99999999999999999999999999999888887655331  


Q ss_pred             cCCCcccccccccCccchHHHHHHHHHHHHHHHHHhhcccccCCCCCCCcchhhhH--HHhh---hhhhhhhhh----h-
Q 013991          199 KYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSY--DALE---SASAEVKEE----E-  268 (432)
Q Consensus       199 ~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~----~-  268 (432)
                           .+      .+.||..+...+++.++.++...++||+|++...+++.+++.+  ++..   ..+++.++.    + 
T Consensus       165 -----~~------~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~  233 (451)
T PF00083_consen  165 -----SD------NWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKE  233 (451)
T ss_pred             -----cc------cccccccccccccccccccccccccccccceeccccccccccccccccccccccccccccccccccc
Confidence                 11      2346666677777777666777889999998655544333221  1110   000111111    0 


Q ss_pred             -ccCCCCccccccchhH-HHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHH
Q 013991          269 -GREATPKKSLLKNWPL-MSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPF  346 (432)
Q Consensus       269 -~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~  346 (432)
                       ++....++++++++.. ........+..............|.  +...+..+.+..  -......++...++. +++.+
T Consensus       234 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~--~~i~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~  308 (451)
T PF00083_consen  234 SQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYS--PSIFENAGISNS--FLATLILGLVNFLGT-LLAIF  308 (451)
T ss_pred             ccccceeeeeccccccccccccccccccccccccccccccccc--cccccccccccc--ccccccccccccccc-ccccc
Confidence             0111346667776542 1122222221111111111111111  122222455555  111222233344444 35568


Q ss_pred             HHHHhChhHHHHHHHHHHHHHHHHhh--HHHhhhhh--HHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhh
Q 013991          347 LERILGPIMVARIAGVLTIPLLTSYP--YIAMLSGF--GLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSC  422 (432)
Q Consensus       347 l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~  422 (432)
                      +.||+|||+++..+.....+..+.++  ........  .....+.........+..+..+..+.+..|..|.+.|++..+
T Consensus       309 ~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~  388 (451)
T PF00083_consen  309 LIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIG  388 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccceeeeeccccccccccccccccccccccccccccccc
Confidence            99999999999888887776665554  11111110  111122222222233444566777888999999999998888


Q ss_pred             HHHHH
Q 013991          423 HFWFV  427 (432)
Q Consensus       423 ~~~~~  427 (432)
                      ..+.+
T Consensus       389 ~~~~~  393 (451)
T PF00083_consen  389 LSYAV  393 (451)
T ss_pred             ccccc
Confidence            76553

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.87  E-value=3.9e-19  Score=156.01  Aligned_cols=311  Identities=16%  Similarity=0.079  Sum_probs=240.8

Q ss_pred             cccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHhhhhhH
Q 013991           56 PISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF  135 (432)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~  135 (432)
                      ....+.|.++++.+|+|.|.+.      .|+++++..+...+.+++..++++|+|.++.+..++++.++++.+-... +.
T Consensus        27 ~itsvgPLL~~Ir~~~gls~s~------aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~   99 (395)
T COG2807          27 AITSVGPLLDEIRQDLGLSFSV------AGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GL   99 (395)
T ss_pred             hhhhhhhhHHHHHHHhcccHHH------HHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cH
Confidence            4567889999999999999999      9999999999999999999999999999999999999999999998877 77


Q ss_pred             HHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCcCCCcccccccccCcc
Q 013991          136 WMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFP  214 (432)
Q Consensus       136 ~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~  214 (432)
                      +.++.+-.+.|.+.+...+. +..+.+.+|+ +-+..++++.....+|..+++.+...+.+.      ..||        
T Consensus       100 ~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk-~~~~mtglYs~sl~~~aaLaa~lavpla~~------~~gW--------  164 (395)
T COG2807         100 PLLFLGTLLAGAGIAVINVLLPSLIKRDFPK-RVGLMTGLYSTSLGAGAALAAALAVPLAQH------SGGW--------  164 (395)
T ss_pred             HHHHHHHHHHHhhHHHHHHhhhHHHHhhccc-chhhHHhHHHHHHHHHHHHHhhhhhHHHHh------hccH--------
Confidence            88899999999999998886 9999999985 568999999999999999999999999872      1234        


Q ss_pred             chHHHHHHHHHHHHHHHHHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhccCCCCccccccchhHHHHHHHHHHH
Q 013991          215 YFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVF  294 (432)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (432)
                       +.....-++++++.++.  ++|...+++..+.                     +....+...++|||.-|...+.+.+.
T Consensus       165 -~~aL~~WAl~allAl~~--WlPq~~r~~~~~~---------------------~~~~~~~~~vw~~~~aW~vtLfmGlq  220 (395)
T COG2807         165 -RGALGFWALLALLALLI--WLPQALREQAASI---------------------ATKLVSVRKVWRSPLAWQVTLFMGLQ  220 (395)
T ss_pred             -HHHHHHHHHHHHHHHHH--Hhhhccccccccc---------------------ccccccccccccCchhHHHHHHHHhh
Confidence             43334445555444433  4454322211110                     01122445689999999999999999


Q ss_pred             HHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHh-ChhHHHHHHHHHHHHHHHHhhH
Q 013991          295 SLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL-GPIMVARIAGVLTIPLLTSYPY  373 (432)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~  373 (432)
                      .+.++....++|.++.+.      |+|+.++|.+.+...+..++.+ +..+.+.+|. ++|+.......++.++...+.+
T Consensus       221 S~~~Y~~~~WLP~ili~~------G~sa~~aG~llsl~~l~~~~~~-ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~  293 (395)
T COG2807         221 SLLYYIVIGWLPAILIDR------GLSAAEAGSLLSLMQLAQLPTA-LLIPLLARRSKNQRPLVVLALLLMLVGLVGLLL  293 (395)
T ss_pred             HHHHHHHHHHHHHHHHHc------CCCHHHhhhHHHHHHHHHHHHH-HHHHHHHHHhcccchHHHHHHHHHHHHHHHHHH
Confidence            999999999999999885      9999999999999999999998 4788888864 5566666666666677666655


Q ss_pred             HHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcccc-ccchhhhhhHHHH
Q 013991          374 IAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVV-RVLTYTLSCHFWF  426 (432)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~g~~~~~~~~  426 (432)
                      .+...       .....++.|.+.++.+|.....+....+ +++.+..+|+..-
T Consensus       294 ~P~~~-------~~lw~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg  340 (395)
T COG2807         294 APGQL-------PILWALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQG  340 (395)
T ss_pred             hhhhH-------HHHHHHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhh
Confidence            54333       1111366677888888888888776654 4555566665543

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.87  E-value=5.4e-23  Score=184.72  Aligned_cols=377  Identities=14%  Similarity=0.064  Sum_probs=231.8

Q ss_pred             CCCchhHH---HHHHHHHHhhccccchhhhHHHHHHHh-cCCccc-cchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCC
Q 013991           37 GLPITELF---SIWIIVLCTALPISSLFPFLYFMIKDF-QIAKRE-EDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGR  111 (432)
Q Consensus        37 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~-~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Gr  111 (432)
                      ...|+.+.   +...+.+.+.++...++.+.|.+...+ +.+... ...+...+.+..+..+|.++|++++|++.||+||
T Consensus        34 g~qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GR  113 (538)
T KOG0252|consen   34 GLQWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGR  113 (538)
T ss_pred             chhHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            34555544   445577788888888888888776654 322111 1122337888999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHhhhh-------hHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHH
Q 013991          112 KPVIIMGTASVVIFNTLFGLSV-------NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGL  183 (432)
Q Consensus       112 r~~l~~~~~~~~~~~~~~~~~~-------~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~  183 (432)
                      |+++...+++..+++++++++.       -.+++...|++.|+|.|.-.|. .++.+|...++.||..++.+.+..+.|.
T Consensus       114 K~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gi  193 (538)
T KOG0252|consen  114 KKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGI  193 (538)
T ss_pred             hhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhH
Confidence            9999999999999999887742       3578999999999999999887 8888999999999999999888888877


Q ss_pred             HHHHHHHhhhcccCCcCCCccccc---ccccCccchHHHHHHHHHHHHHHHHHhhcccccCCCCCCCcchhhhHHHhhhh
Q 013991          184 IIGPALGGFLAQPAEKYPNLFSSE---SLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESA  260 (432)
Q Consensus       184 ~~g~~~~~~l~~~~~~~~~~~gw~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~  260 (432)
                      ..|.+++-.+....+.   .++-+   ..- ..-||..+.+.+++++..+.....+||+++......++.+...++.++.
T Consensus       194 laG~ivt~Iv~~~fe~---~~~~~~~~~~l-d~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~  269 (538)
T KOG0252|consen  194 LAGGIVALIVSAIFEK---IFNGPSTYPHL-DGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAGDMKKV  269 (538)
T ss_pred             hhccHHHHHHHHHHhc---cCCCCCCchHH-HHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhhccccc
Confidence            7777666555432111   11111   111 3568988888888888888888889999876522111111110111110


Q ss_pred             h------hhhhhhhccCCCC----ccccccc---hhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhH
Q 013991          261 S------AEVKEEEGREATP----KKSLLKN---WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGE  327 (432)
Q Consensus       261 ~------~~~~~~~~~~~~~----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~  327 (432)
                      .      ++..+...+.+..    +...+..   +.++.....++++-........+....+..      +|+.+...-+
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~------ig~~~~~~~~  343 (538)
T KOG0252|consen  270 LSVDIEAESTAESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSA------IGVIPSANTY  343 (538)
T ss_pred             cccccchhhccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHh------hccCCCcchH
Confidence            0      0000111111111    1112222   223334444555444544444333333332      3555444433


Q ss_pred             --------HHHHHHHHHHHHHHHhHHHHHHHhChhHHHHHHHHHHHHHHHHhhHHHh-hhhhHHHHHHHHHHHHHHhhhh
Q 013991          328 --------VLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAM-LSGFGLAFLLNCASVVKNLLSV  398 (432)
Q Consensus       328 --------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  398 (432)
                              ...+....+.+-..++...+.|++||++....++.++.+..+.++...+ ..+.....+.+..  ...++..
T Consensus       344 ~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l--~~ff~NF  421 (538)
T KOG0252|consen  344 HELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSL--TFFFGNF  421 (538)
T ss_pred             HHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHH--HHHHHhc
Confidence                    1111122222211245666799999999999999998888777665433 1111111222222  2222333


Q ss_pred             hHHHHHHHHHhccccccchhhhhhHHH
Q 013991          399 SIITGLFILQNRAVVRVLTYTLSCHFW  425 (432)
Q Consensus       399 ~~~~~~~~~~~~~~p~~~~g~~~~~~~  425 (432)
                      +.........+|..|.+.|++..|+..
T Consensus       422 GPn~ttfivpaE~FParvR~t~hGIsA  448 (538)
T KOG0252|consen  422 GPNATTFIVPAEIFPARVRSTCHGISA  448 (538)
T ss_pred             CCCceeEEeehhhchHHHhhhhhhHHH
Confidence            444455566799999999999888754

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.86  E-value=1e-18  Score=163.48  Aligned_cols=336  Identities=16%  Similarity=0.205  Sum_probs=239.2

Q ss_pred             HHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccC-ChHHHHHHHHHHH
Q 013991           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYG-RKPVIIMGTASVV  123 (432)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G-rr~~l~~~~~~~~  123 (432)
                      .+....++.....+...|.++.+.++.|.|..|      +|.+.+...+...++++++|.++||.+ +|+.+.+..++.+
T Consensus         6 rLs~~~f~~f~~~G~~~p~~~~~L~~~G~s~~q------IG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~   79 (400)
T PF03825_consen    6 RLSLMYFLYFFAYGAFLPYLPLYLESRGFSGTQ------IGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSA   79 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHH
Confidence            345566677777788889999999999999999      999999999999999999999999987 5778878778777


Q ss_pred             HHHHHHhhhhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHH-HhhhcccCCcCC
Q 013991          124 IFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPAL-GGFLAQPAEKYP  201 (432)
Q Consensus       124 ~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~-~~~l~~~~~~~~  201 (432)
                      +........++++.+++.-++..+......|. .++..+...  ++++-.|-.....++|.+++... ++.+..      
T Consensus        80 ~~~~~~~~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~------  151 (400)
T PF03825_consen   80 LALLLLAFSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGG------  151 (400)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHh------
Confidence            77777777888988888777777766655554 666666554  34556667777778888777554 223322      


Q ss_pred             CcccccccccCccchHHHHHHHHHHHHHHHHHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhccCCCCccccccc
Q 013991          202 NLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKN  281 (432)
Q Consensus       202 ~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (432)
                       ..++      .....++++.+...++.....+.+|+.|++++++++.++                  ....+..+++|+
T Consensus       152 -~~~~------~~~~~~~~i~~~~~~ll~~~~l~lp~~~~~~~~~~~~~~------------------~~~~~~~~llk~  206 (400)
T PF03825_consen  152 -YLGI------SGTSLIFYIAAILSLLLAGFALFLPKTPPKRSAKESVKK------------------LLGLDALKLLKN  206 (400)
T ss_pred             -hhcc------ccccHHHHHHHHHHHHHHHHHHhCCCCccccccCCCccc------------------ccchHHHHHhcC
Confidence             1111      111122344444444443445567877633322211111                  111233568999


Q ss_pred             hhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcc-cccchhhHHHHHHHHHHHHHHHHhHHHHHHHhChhHHHHHH
Q 013991          282 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLN-YSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIA  360 (432)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  360 (432)
                      |++....+..++.......+..+.+.|+++.      | .+....+.+.++..+.-++. +...+++.+|++.++++.++
T Consensus       207 ~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~------gg~~~~~~g~~~~l~~~aEi~~-f~~~~~~~~r~g~~~ll~~a  279 (400)
T PF03825_consen  207 PRFLVFLLAAFLIGISHAAYYTFFSIYLQEL------GGYSGSTIGILWALGVVAEIPF-FFFSGRFLKRFGIKWLLLLA  279 (400)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------ccchhhHHHHHHHHHHHHHHHH-HHHHHHHHHhcCHHHHHHHH
Confidence            9999888888888888888888999998874      5 67777888777766666665 46889999999999999999


Q ss_pred             HHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHHHH
Q 013991          361 GVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWFV  427 (432)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~  427 (432)
                      .+..++=..++.+..... ...+........+.|...+........++.+.+|++.|+++.+++..+
T Consensus       280 ~~~~~vR~~l~a~~~~~~-~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~  345 (400)
T PF03825_consen  280 LVAYAVRWLLYAYFSDPW-PFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSAL  345 (400)
T ss_pred             HHHHHHHHHHHHHhcCCc-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHH
Confidence            998888877776652221 122223334455677788888889999999999999999999988754

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.86  E-value=1.4e-18  Score=165.16  Aligned_cols=361  Identities=13%  Similarity=0.105  Sum_probs=209.1

Q ss_pred             chhHHHHHHHHHHhhccccchhhhHHHH-HHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhcc-CChHHHHH
Q 013991           40 ITELFSIWIIVLCTALPISSLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-GRKPVIIM  117 (432)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~  117 (432)
                      .+.++.++...+...+..+.....+|.+ .+++|.++.+      .+.+.+.+.....++.+++|+++||+ ||||++++
T Consensus         8 p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~------a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~ili   81 (493)
T PRK15462          8 PRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNH------AYELFSAYCSLVYVTPILGGFLADKVLGNRMAVML   81 (493)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHH
Confidence            3556666666777777777777777755 5678999998      99999999999999999999999999 99999999


Q ss_pred             HHHHHHHHHHHHhhhh-hHHHHHHHHHHHhhhccchhhH-Hhhhhhhcccc--hhhhhhhhHHHHHHHHHHHHHHHHhhh
Q 013991          118 GTASVVIFNTLFGLSV-NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREE--HQALGLSTVSTAWGIGLIIGPALGGFL  193 (432)
Q Consensus       118 ~~~~~~~~~~~~~~~~-~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~g~~~~~~l  193 (432)
                      +.++..++.++.+..+ +...++++..+.+++.|...+. .++++|.+|++  +|..++++.....++|..++|.+.+++
T Consensus        82 G~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L  161 (493)
T PRK15462         82 GALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYA  161 (493)
T ss_pred             HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHH
Confidence            9999999987776543 2233444444455566666564 88999999975  699999999999999999999999999


Q ss_pred             cccCCcCCCcccccccccCccchHHHHHHHHHHHHHHHHHhhcccccCCC---CCCCcchhhhHH--------------H
Q 013991          194 AQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRH---NDDDDSCDVSYD--------------A  256 (432)
Q Consensus       194 ~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~---~~~~~~~~~~~~--------------~  256 (432)
                      .+                .++|+..|.++++..++.++..+..++...+.   ++++.+++....              .
T Consensus       162 ~~----------------~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (493)
T PRK15462        162 QE----------------EYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPA  225 (493)
T ss_pred             Hh----------------hhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence            87                33444444555543333333332222111110   011110000000              0


Q ss_pred             hhhh--hhhhhh---------------hhccCCCCccccccchh--HHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCC
Q 013991          257 LESA--SAEVKE---------------EEGREATPKKSLLKNWP--LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGG  317 (432)
Q Consensus       257 ~~~~--~~~~~~---------------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (432)
                      ....  .++...               .....+.+..+  |+|-  +....+...++...+....+.+..|..+.....-
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e--r~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~  303 (493)
T PRK15462        226 LITVLFWKEWSVYALIVATIIGLGVLAKIYRKAENQKQ--RKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDM  303 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH--HhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchh
Confidence            0000  000000               00000001001  1111  1112222222222223333344445443221111


Q ss_pred             cccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhC--hh---HH--HHHHHHHHHHHHHHhhHHHhhh---hhHHHHHHH
Q 013991          318 LNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG--PI---MV--ARIAGVLTIPLLTSYPYIAMLS---GFGLAFLLN  387 (432)
Q Consensus       318 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~--~~---~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  387 (432)
                      +|++ .......+...+..++.+ ++..++=.|..  +|   ..  ..+++++.+++++.+.......   +.....++.
T Consensus       304 ~g~~-ip~~~~qslNp~~ii~l~-P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~  381 (493)
T PRK15462        304 FGYT-VPTAMFQSINAFAVMLCG-VFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMV  381 (493)
T ss_pred             ccee-eCHHHHHhHhHHHHHHHH-HHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHH
Confidence            2332 123444455555555444 33333322221  11   11  3466666677766655433221   112333456


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHHH
Q 013991          388 CASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWF  426 (432)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~  426 (432)
                      ....+.+.+.....|...+++++..|++.+|...|+++.
T Consensus       382 ~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l  420 (493)
T PRK15462        382 LGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYML  420 (493)
T ss_pred             HHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHH
Confidence            666777888889999999999999999999999999876

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.86  E-value=7.3e-19  Score=166.37  Aligned_cols=366  Identities=15%  Similarity=0.126  Sum_probs=227.9

Q ss_pred             CchhHHHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhh----ccCChHH
Q 013991           39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD----RYGRKPV  114 (432)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~d----r~Grr~~  114 (432)
                      |.++++.+....+...+......+..+.+.+++|.+...      .+++..+..+...+.+|+.|.++|    |+||||.
T Consensus         2 ~~~~li~~~~~~~Giq~~~~l~~~~l~~yl~~lg~~~~~------~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp   75 (477)
T TIGR01301         2 PLRKLLRVASVAAGVQFGWALQLSLLTPYVQELGIPHAW------ASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRP   75 (477)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHH
Confidence            345666677777777778888888888889999999988      999999999999999999999999    5999999


Q ss_pred             HHHH-HHHHHHHHHHHhhhhhHH-----------------HHHHHHHHHhhhccch-hhHHhhhhhhcccchh--hhhhh
Q 013991          115 IIMG-TASVVIFNTLFGLSVNFW-----------------MAVLTRFLLGSLNGLL-GPIKAYACEIFREEHQ--ALGLS  173 (432)
Q Consensus       115 l~~~-~~~~~~~~~~~~~~~~~~-----------------~l~~~r~~~G~~~g~~-~~~~~~i~~~~~~~~r--~~~~~  173 (432)
                      ++++ .+...++.++++++++.+                 ..+++-.+..++.... .|..++++|.+|+++|  +.+.+
T Consensus        76 ~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~  155 (477)
T TIGR01301        76 FIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANA  155 (477)
T ss_pred             HHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHH
Confidence            8775 666666667777766543                 2222223334455544 4459999999998866  57999


Q ss_pred             hHHHHHHHHHHHHHHHHhhhcccCCcCCCcccccc--cc--cCccchHHHHHHHHHHHHH-HHHHhhcccccCCCCCCCc
Q 013991          174 TVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSES--LF--GKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDD  248 (432)
Q Consensus       174 ~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~--~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~  248 (432)
                      +.+.+.++|.++|+.++++.....     .+++..  ..  -..+.+..|++.++..++. ++..+..||.+...+++.+
T Consensus       156 ~~~~~~~lG~ilg~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~  230 (477)
T TIGR01301       156 YFSFFMAIGNVLGYAAGAYSGLYK-----IFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFI  230 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHH-----hcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccch
Confidence            999999999999999998762100     111100  00  0235677777777766654 4456678887643221110


Q ss_pred             chhhhHHHhhhhhhhhhhhhccCCCCcccccc-----chhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCC----cc
Q 013991          249 SCDVSYDALESASAEVKEEEGREATPKKSLLK-----NWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGG----LN  319 (432)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g  319 (432)
                      ++     +.++..      +.+.....+++++     .+.++..++..++..+..+.+..+.+.|..+....++    ..
T Consensus       231 ~~-----~~~~~~------~~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~  299 (477)
T TIGR01301       231 NS-----EAAPPS------KHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAK  299 (477)
T ss_pred             hh-----hccccc------ccchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhH
Confidence            00     000000      0000011222222     2455666666666655555555555544332111100    00


Q ss_pred             cccc-hhhH-HHHHHHHHHHHHHHHhHHHHHHHhCh-hHHHHHHHHHHHHHHHHhhHHHhhhh---------------hH
Q 013991          320 YSTQ-MVGE-VLAITGFSLLVFQLSLYPFLERILGP-IMVARIAGVLTIPLLTSYPYIAMLSG---------------FG  381 (432)
Q Consensus       320 ~s~~-~~g~-~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~  381 (432)
                      ++.. ..|. -.....+...+.+ ++..++.+|+|+ |+...++.++.++++....+.....+               ..
T Consensus       300 y~~gvr~G~~~l~~~s~~~~i~s-~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~  378 (477)
T TIGR01301       300 YDDGVRAGAFGLMLNSVVLGITS-IGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTG  378 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchh
Confidence            1000 0122 2333444444555 467888999985 67778887887777777765543111               01


Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHhccccc--cchhhhhhHHHHH
Q 013991          382 LAFLLNCASVVKNLLSVSIITGLFILQNRAVVR--VLTYTLSCHFWFV  427 (432)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~g~~~~~~~~~  427 (432)
                      .....++.....|+..+..+...++++++..|+  +..|...|+++..
T Consensus       379 ~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~  426 (477)
T TIGR01301       379 IKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLA  426 (477)
T ss_pred             hHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHH
Confidence            123455566677888888899999999999995  4558888888764

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK09669 putative symporter YagG; Provisional

Probab=99.84  E-value=2e-18  Score=166.05  Aligned_cols=330  Identities=16%  Similarity=0.069  Sum_probs=200.4

Q ss_pred             CCchhHHHHHHHHHHhhccccchhhhH-HHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhc----cCCh
Q 013991           38 LPITELFSIWIIVLCTALPISSLFPFL-YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR----YGRK  112 (432)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr----~Grr  112 (432)
                      .++++.+.-.+..+...+........+ +++.+++|++..+      +|.+.++..+..++..|+.|.++||    +|||
T Consensus         6 l~~~~~~~yg~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~------~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grr   79 (444)
T PRK09669          6 LTTKDKIGYGLGDTACNLVWQTVMLFLAYFYTDVFGLSAAI------MGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQF   79 (444)
T ss_pred             ccHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHcccceeeEeeecCCCCCCCc
Confidence            344444433334333333333344444 5778889999999      9999999999999999999999998    7874


Q ss_pred             -HHHHHHHHHHHHHHHHHhhhh------hHHHHHHHHHHHhhhccchh-hHHhhhhhhc-ccchhhhhhhhHHHHHHHHH
Q 013991          113 -PVIIMGTASVVIFNTLFGLSV------NFWMAVLTRFLLGSLNGLLG-PIKAYACEIF-REEHQALGLSTVSTAWGIGL  183 (432)
Q Consensus       113 -~~l~~~~~~~~~~~~~~~~~~------~~~~l~~~r~~~G~~~g~~~-~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~  183 (432)
                       +.++.+.+..+++.++....+      ..+.+++..++.+.+..... |..++.+|+. ++++|.+..+.......+|.
T Consensus        80 rp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~  159 (444)
T PRK09669         80 RPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGG  159 (444)
T ss_pred             chhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence             556677777777765554443      24555666666666544444 4488899988 56889998888888888888


Q ss_pred             HHHHHHHhhhcccCCcCCCcccccccccCccchHHHHHHHHHHHHHHH-HHhhcccccCCCCCCCcchhhhHHHhhhhhh
Q 013991          184 IIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASA  262 (432)
Q Consensus       184 ~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~  262 (432)
                      .+++.+...+...       ++.. .. +.+|+..+.+.+++.++..+ ..+..+|..+..+++ +  .           
T Consensus       160 ~i~~~~~~pl~~~-------~~~~-~~-~~g~~~~~~i~~ii~~v~~~~~~~~~~e~~~~~~~~-~--~-----------  216 (444)
T PRK09669        160 LIVSVIALPLVDI-------LGKG-DE-QKGYFYAMMVMGLLGVVLFFCCFFMTKERYTPEVDN-S--S-----------  216 (444)
T ss_pred             HHHHHHHHHHHHH-------hCCC-ch-hhhHHHHHHHHHHHHHHHHHHHhCCeEEecCCCCcC-C--C-----------
Confidence            8887766555431       1110 00 34566655666655554433 334445532221100 0  0           


Q ss_pred             hhhhhhccCCCCccccccchhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHH
Q 013991          263 EVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLS  342 (432)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~  342 (432)
                             +.....+..+||++++......++............+.|....     ++ ++...+.+.....+..+++. +
T Consensus       217 -------~~~~~~~~~~~n~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~-----~~-~~~~~~~~~~~~~i~~ii~~-~  282 (444)
T PRK09669        217 -------SVWKDLKLLLGNSQWRIMFIFNVVLLTAVVTRGGATLYYVNYV-----LL-RPDLATLFLVTGMIAGLFGA-L  282 (444)
T ss_pred             -------CHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhhheeeeee-----cC-CHHHHHHHHHHHHHHHHHHH-H
Confidence                   0112455678899988877766665554444444333333222     22 23333444444445555554 6


Q ss_pred             hHHHHHHHhChhHHHHHHHHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccc
Q 013991          343 LYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVR  414 (432)
Q Consensus       343 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  414 (432)
                      +.+++.||+++|+....+.....+....+.+... .   ....+.+..++.+++.+...+..+++++|.+|.
T Consensus       283 ~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~  350 (444)
T PRK09669        283 LSERLLGKFDRVRAFKWTIVAFVILSALIFFIPP-S---NVWLIFALNILFNFIQNLTTPLQWSMFSDVVDY  350 (444)
T ss_pred             HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCc-c---hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            8889999999999988777655543322222211 1   112234445566777888889999999998873

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.83  E-value=1.6e-20  Score=158.29  Aligned_cols=342  Identities=13%  Similarity=0.094  Sum_probs=232.0

Q ss_pred             HHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhc-cCChHHHHHHHHHH
Q 013991           44 FSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKPVIIMGTASV  122 (432)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~l~~~~~~~  122 (432)
                      ...++..|..++.+........++.+|.+++.++      ..++.+.|+...++-+++.|++.|| +|-|..-++-++..
T Consensus        47 v~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~ak------ftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv  120 (459)
T KOG4686|consen   47 VFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAK------FTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFV  120 (459)
T ss_pred             HHHHHhcccceeecCCchhhhhhhhcccccceee------eeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHH
Confidence            3455566667777777778888888999999988      9999999999999999999999996 77777777777777


Q ss_pred             HHHHHHHhh---hhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCC
Q 013991          123 VIFNTLFGL---SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE  198 (432)
Q Consensus       123 ~~~~~~~~~---~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~  198 (432)
                      .++.+.++.   .+.+|++..+|++.|+|+-...++ ..+...++..|+-+.++|+......+|..+--.+.+++.+..+
T Consensus       121 ~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~  200 (459)
T KOG4686|consen  121 FLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMG  200 (459)
T ss_pred             HHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHH
Confidence            777777754   789999999999999987777776 9999999999999999999999999999988888888877433


Q ss_pred             cCCCcccccccccCccchHHH-HHHHHHHHHHHHHHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhh-ccCC-CCc
Q 013991          199 KYPNLFSSESLFGKFPYFLPC-LCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEE-GREA-TPK  275 (432)
Q Consensus       199 ~~~~~~gw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~  275 (432)
                      ..-...|...    .+.+..+ ...+...++..+..-+..+..+              +    .-+.++.. .+.+ ...
T Consensus       201 ~~~~~~ghT~----LG~~l~~~~~tc~~slical~lg~~D~rAe--------------r----ilh~e~g~~Ge~pkLtd  258 (459)
T KOG4686|consen  201 RMFPGVGHTL----LGLWLCFEVKTCKQSLICALSLGLSDDRAE--------------R----ILHLEEGFLGEEPKLTD  258 (459)
T ss_pred             HhcccchHHH----HHHHHHHHHHHHHHHHHHHHHhhhhhhHHH--------------H----HHhhhcCcccCCccccc
Confidence            2110011000    0000000 0000111111111111111000              0    00000000 0011 111


Q ss_pred             cccccchhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhChhH
Q 013991          276 KSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIM  355 (432)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  355 (432)
                      ..-+ .|++|...+++.+++....-+...-|.++++.     +|+|+..++.+.+.......+.+ ++.+.++||.|++-
T Consensus       259 v~~f-~ppfw~~~iicv~yyva~fPFi~lg~~fF~~r-----fGlS~~~a~~i~s~vy~Isav~s-pvfg~i~Dk~G~n~  331 (459)
T KOG4686|consen  259 VNTF-YPPFWVLVIICVLYYVAWFPFITLGPMFFQKR-----FGLSAVSAGNILSTVYGISAVLS-PVFGAISDKYGFNL  331 (459)
T ss_pred             cccc-CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-----hCCChhhccchhhhhhhhhhhhh-hhHHHhHhhhccee
Confidence            1112 37888888888888888777877778888776     89999999999998888888877 78999999999887


Q ss_pred             HHHHHHHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHHHH
Q 013991          356 VARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWFV  427 (432)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~  427 (432)
                      ..+.+..+..+.--...+.+..+       .+....+.|......-...+.+++..+|+++.|+++|..+-.
T Consensus       332 ~wv~~a~~~tl~~H~~l~Ft~ls-------Py~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsI  396 (459)
T KOG4686|consen  332 WWVASACILTLLGHSGLFFTFLS-------PYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSI  396 (459)
T ss_pred             hhHHHHHHHHHHHhhhHHhhhcc-------HHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHH
Confidence            76665554433322222222222       445555666666666666888899999999999999987643

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.83  E-value=2.3e-18  Score=166.70  Aligned_cols=335  Identities=13%  Similarity=0.098  Sum_probs=205.1

Q ss_pred             hhHHHHHHHHHHhhccccchhhhHH-HHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhh----ccCC-hHH
Q 013991           41 TELFSIWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD----RYGR-KPV  114 (432)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~d----r~Gr-r~~  114 (432)
                      ++.+.-.++.+...+......+.++ ++.+.+|++...      +|.+..+..+.-++..|+.|.++|    |+|| |+.
T Consensus         6 ~~~~~yg~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~------vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~   79 (473)
T PRK10429          6 TTKLSYGFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGL------VGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPW   79 (473)
T ss_pred             hHHHhhccchhHHhHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchh
Confidence            3333334444445555555666554 666778999999      999999999999999999999999    6698 566


Q ss_pred             HHHHHHHHHHHHHHHhhhh------hHHHHHHHHHHHhhhccchhh-HHhhhhhhc-ccchhhhhhhhHHHHHHHHHHHH
Q 013991          115 IIMGTASVVIFNTLFGLSV------NFWMAVLTRFLLGSLNGLLGP-IKAYACEIF-REEHQALGLSTVSTAWGIGLIIG  186 (432)
Q Consensus       115 l~~~~~~~~~~~~~~~~~~------~~~~l~~~r~~~G~~~g~~~~-~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~g  186 (432)
                      ++++.+..+++..++...+      .+..+++..++.+++.....+ ..++..|.. ++++|.+..+.-..+.++|..+.
T Consensus        80 il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~  159 (473)
T PRK10429         80 ILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVT  159 (473)
T ss_pred             HhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            7778877777765554322      133455555666666655555 488899998 58999999888777777776666


Q ss_pred             HHHHhhhcccCCcCCCcccccccccCccchHHHHHHHHHHHHHH-HHHhhcccccCCCCCCCcchhhhHHHhhhhhhhhh
Q 013991          187 PALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVK  265 (432)
Q Consensus       187 ~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (432)
                      +.+...+.+       .+|...  ...+|+....+.+++.++.. +..+..||.+.....+.++++              
T Consensus       160 ~~~~~~~~~-------~~g~~~--~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~--------------  216 (473)
T PRK10429        160 AGFTLPFVN-------YVGGGD--RGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQVSAEGS--------------  216 (473)
T ss_pred             HHHHHHHHH-------HhCCCc--hhhhHHHHHHHHHHHHHHHHHHHHcCceecCCcccccccccc--------------
Confidence            655544432       111100  02234544455555444433 333446665322111100000              


Q ss_pred             hhhccCCCCccccccchhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHH
Q 013991          266 EEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYP  345 (432)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~  345 (432)
                        +.+.....+.+++|++++..+...++..........+.+.|.+..     .+ +....+.+....++..+++. ++.+
T Consensus       217 --~~~~~~~~~~~~~n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~-----~~-~~~~~~~~~~~~~i~~ii~~-~~~~  287 (473)
T PRK10429        217 --HLTLKDIVALIYKNDQLSCLLGMALAYNIASNIINGFAIYYFTYV-----IG-DADLFPYYLSYAGAANLVTL-ILFP  287 (473)
T ss_pred             --CCCHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhheeeEEEEE-----CC-CHHHHHHHHHHHHHHHHHHH-HHHH
Confidence              000011234567888888877777777666555555555444332     22 44556666666667777776 6889


Q ss_pred             HHHHHhChhHHHHHHHHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccc
Q 013991          346 FLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVR  414 (432)
Q Consensus       346 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  414 (432)
                      ++.||+|+|+.+.++..+.+++.+.+........ .....+.+...+.+++.+...+...++++|.+|.
T Consensus       288 ~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~  355 (473)
T PRK10429        288 RLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAP-HNALLIVIAGILLNIGTALFWVLQVIMVADTVDY  355 (473)
T ss_pred             HHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            9999999999988777765555444332211111 1122334444556667777778888899998773

>TIGR00788 fbt folate/biopterin transporter

Probab=99.83  E-value=4.8e-19  Score=170.33  Aligned_cols=356  Identities=13%  Similarity=0.045  Sum_probs=220.6

Q ss_pred             CchhHHHHHHHHHHhhccccchh-hhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccC-----Ch
Q 013991           39 PITELFSIWIIVLCTALPISSLF-PFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYG-----RK  112 (432)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G-----rr  112 (432)
                      +...+..+...++..++. .... ...+.+.+++|++.++      ++...+...+...+-.+ +|+++||++     ||
T Consensus        24 ~~~~~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~------i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr   95 (468)
T TIGR00788        24 PRVVLAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGAR------YQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKR   95 (468)
T ss_pred             cchHHHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccch
Confidence            334455666677778887 4444 4445666789999999      99999999999888555 999999998     77


Q ss_pred             HHHHHHHHHHH-HHHHHHhhhhhHHHHH-HHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHH---HHHHHHHHHH
Q 013991          113 PVIIMGTASVV-IFNTLFGLSVNFWMAV-LTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVS---TAWGIGLIIG  186 (432)
Q Consensus       113 ~~l~~~~~~~~-~~~~~~~~~~~~~~l~-~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~---~~~~~g~~~g  186 (432)
                      +.++++.++.. ++....+..++..... +..++.+++.+...++ -++..|..+ +++....+..+   ...++|.++|
T Consensus        96 ~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg  174 (468)
T TIGR00788        96 WYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLIS  174 (468)
T ss_pred             HHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHH
Confidence            88888876663 4434444444544444 4778888887877665 999999998 55544433333   3345899999


Q ss_pred             HHHHhhhcccCCcCCCcccccccccCccchHHHHHHHHHHHHHHHHHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhh
Q 013991          187 PALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKE  266 (432)
Q Consensus       187 ~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (432)
                      +.++|.+.+                ..+|+..+.+.+++.++..+...+++|+++....+.++.+....  ........+
T Consensus       175 ~~l~G~l~~----------------~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~~~~--~~~~~~~~~  236 (468)
T TIGR00788       175 SLLGGPLLD----------------KTLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLEMNM--ALLTLGVLA  236 (468)
T ss_pred             HHHHHHHHH----------------hcCcchHHHHHHHHHHHHHHHHHhcccccccccccccccchhhh--hhhhhhHHH
Confidence            999999987                34455555776666666555567778864211111100000000  000000000


Q ss_pred             hhccCCCCccccccchhHHHHHHHHHH-HHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHH
Q 013991          267 EEGREATPKKSLLKNWPLMSSIIVYCV-FSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYP  345 (432)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~  345 (432)
                      ..++.....+..+++|.++...+..++ +......   ..+.|+.++   ..+|+++...|......+++.+++. ...+
T Consensus       237 ~~~~~~~~l~~~l~~~~i~~~l~fifl~~~~~~~~---~~~~f~~~~---~~lG~s~~~~G~~~~~~~v~~i~g~-~~~~  309 (468)
T TIGR00788       237 NVKVQILGLRGAIQLLEIAKPLIFIFLSYANLPGA---SGSVFCATT---QCLPGGPSFSGMSKVVGNLGSLCGV-GGYD  309 (468)
T ss_pred             HHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhcCCC---CceeEEEEc---ccCCCCcchhhhHHHHHHHHHHHHH-HHHH
Confidence            000111123344667777765544444 2211111   111121111   2379999999999999999998887 4777


Q ss_pred             HHHHHhChhHHHHHHHHHHHHHHHHhhHHHhhhh----hHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhh
Q 013991          346 FLERILGPIMVARIAGVLTIPLLTSYPYIAMLSG----FGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLS  421 (432)
Q Consensus       346 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~  421 (432)
                      +..+|++.|+++.++.++..++...........+    ............+.++..+........++.+..|++.+|+.+
T Consensus       310 ~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~  389 (468)
T TIGR00788       310 RFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVF  389 (468)
T ss_pred             HHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHH
Confidence            7778999999999888887776544321110000    000112333344555566666677799999999999999999


Q ss_pred             hHHHHHh
Q 013991          422 CHFWFVK  428 (432)
Q Consensus       422 ~~~~~~~  428 (432)
                      +++...+
T Consensus       390 al~~s~~  396 (468)
T TIGR00788       390 ALLASIL  396 (468)
T ss_pred             HHHHHHH
Confidence            9987764

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PTZ00207 hypothetical protein; Provisional

Probab=99.82  E-value=9.6e-18  Score=162.03  Aligned_cols=129  Identities=13%  Similarity=0.151  Sum_probs=108.9

Q ss_pred             cchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHhhh-----
Q 013991           58 SSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS-----  132 (432)
Q Consensus        58 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----  132 (432)
                      +..+...+.+.+++|.+..+      .+++.+.. .....++++.|++.||+|||+++.++.+++.++.++++++     
T Consensus        44 y~fsv~s~~L~~~lgls~~~------l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i  116 (591)
T PTZ00207         44 YAFNLISGAMQARYNLTQRD------LSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVI  116 (591)
T ss_pred             HHHHHHHHHHHHHhCcCHHH------HHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            34556678899999999998      88888764 3445678889999999999999999999999999999987     


Q ss_pred             -hhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHH-HHHHHhhhc
Q 013991          133 -VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLII-GPALGGFLA  194 (432)
Q Consensus       133 -~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~-g~~~~~~l~  194 (432)
                       ++++.+++.|++.|+|.+...+. ...+.+++| ++||++.|+...+.++|.++ +++..+++.
T Consensus       117 ~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~  180 (591)
T PTZ00207        117 EGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS  180 (591)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             68999999999999998877664 778888886 78999999999999999975 555555543

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.81  E-value=1e-18  Score=167.31  Aligned_cols=321  Identities=14%  Similarity=0.089  Sum_probs=226.8

Q ss_pred             hhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhh----ccCChHH-HHHHHHHHHHHHHHHhhh-h--
Q 013991           62 PFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD----RYGRKPV-IIMGTASVVIFNTLFGLS-V--  133 (432)
Q Consensus        62 ~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~d----r~Grr~~-l~~~~~~~~~~~~~~~~~-~--  133 (432)
                      ...+++.+.+|+++..      .|.+..+..+..++..|+.|.++|    |+||||. ++++.+..+++.+++... +  
T Consensus        23 ~~~~f~~~~~gl~~~~------~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~   96 (428)
T PF13347_consen   23 YLLYFYTDVLGLSPAL------AGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAG   96 (428)
T ss_pred             HHHHHHHHHcCCCHHH------HHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccch
Confidence            3346777888999998      999999999999999999999999    8997654 567888888888777765 3  


Q ss_pred             -----hHHHHHHHHHHHhhhccchhhH-Hhhhhhhcc-cchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCcCCCcccc
Q 013991          134 -----NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFR-EEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSS  206 (432)
Q Consensus       134 -----~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw  206 (432)
                           ....+.+..++..++....... .++..|..+ +++|.+..+.-+.+..+|..+...+.+.+.+..+       .
T Consensus        97 ~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g-------~  169 (428)
T PF13347_consen   97 LSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFG-------G  169 (428)
T ss_pred             hhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhc-------c
Confidence                 2234566666667776666554 899999998 5789999999999999988877777777765222       1


Q ss_pred             cccccCccchHHHHHHHHHHHHH-HHHHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhccCCCCccccccchhHH
Q 013991          207 ESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLM  285 (432)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (432)
                      ...  ..+|+....+.+++.++. ++..+..+|.++..+++++                   +.+-....++++|||+++
T Consensus       170 ~~~--~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~-------------------~~~~~~~~~~~~~nr~~~  228 (428)
T PF13347_consen  170 GDT--SNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQEK-------------------KISLRDSLRSLFRNRPFR  228 (428)
T ss_pred             Ccc--chHHHHHHHHHHHHHHHHhhhhhheeeecccccccccc-------------------ccccccchhhhcccchHH
Confidence            100  124666666666666554 3445566772211111111                   112234577889999999


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhChhHHHHHHHHHHH
Q 013991          286 SSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTI  365 (432)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  365 (432)
                      ...+..++............+.|.+..     +|.+ ...+.+.....+..+++. ++.+++.||+|+|+.+..+..+.+
T Consensus       229 ~l~~~~~~~~~~~~~~~~~~~y~~~~v-----l~~~-~~~~~~~~~~~~~~~v~~-~~~~~l~~r~gk~~~~~~~~~~~~  301 (428)
T PF13347_consen  229 ILLLAFFLQWLAFALMNTFLPYYFTYV-----LGNE-GLISIFMLIFFVASIVGS-PLWGRLSKRFGKKKVYIIGLLLAA  301 (428)
T ss_pred             HHHHHHHHHHhhhhhhhhHHHHHHHHH-----hcCc-hhhHHHHHHHHHHHHHHH-HHHHHHHHHccceeehhhhHHHHH
Confidence            988888887777777777777666665     3433 456666677777777776 688999999999999999999988


Q ss_pred             HHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccc-------hhhhhhHHHHH
Q 013991          366 PLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVL-------TYTLSCHFWFV  427 (432)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-------~g~~~~~~~~~  427 (432)
                      ++.+++.+....    .....++...+.+.+.+.......++.+|..+.++       .|..++.+.+.
T Consensus       302 ~~~~~~~~~~~~----~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~  366 (428)
T PF13347_consen  302 LGFLLLFFLGPG----SPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFF  366 (428)
T ss_pred             HHHHHHHHHHhh----hHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhh
Confidence            887776666421    12345566667777888888889999999887432       35555555443

>PRK09848 glucuronide transporter; Provisional

Probab=99.80  E-value=3.8e-17  Score=157.46  Aligned_cols=339  Identities=17%  Similarity=0.126  Sum_probs=203.2

Q ss_pred             CCchhHHHHHHHHHHhhccccchhhhH-HHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhcc----CCh
Q 013991           38 LPITELFSIWIIVLCTALPISSLFPFL-YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY----GRK  112 (432)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~----Grr  112 (432)
                      .++++.+.-.+..+...+......+++ +++.+.+|++..+      +|.+.+...+..++..|+.|+++||.    |||
T Consensus         5 ~~~~~~~~yg~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~------~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~   78 (448)
T PRK09848          5 LSWRTIVGYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAA------AGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKF   78 (448)
T ss_pred             ccHHHHHhhccchHHhHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHhhhhheeeeecCCCCCcCc
Confidence            344455444445555555555555555 4667778999999      99999999999999999999999996    777


Q ss_pred             HHH-HHHHHHHHHHHHHH-hhh----h--hHHHHHHHHHHHhhhccchhh-HHhhhhhhcc-cchhhhhhhhHHHHHH--
Q 013991          113 PVI-IMGTASVVIFNTLF-GLS----V--NFWMAVLTRFLLGSLNGLLGP-IKAYACEIFR-EEHQALGLSTVSTAWG--  180 (432)
Q Consensus       113 ~~l-~~~~~~~~~~~~~~-~~~----~--~~~~l~~~r~~~G~~~g~~~~-~~~~i~~~~~-~~~r~~~~~~~~~~~~--  180 (432)
                      |.. .++.+...+..++. ...    +  ..+..++..++.+++.+...+ ..++..|..+ +++|.+..+.-..+.+  
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~  158 (448)
T PRK09848         79 RPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLT  158 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHH
Confidence            654 55555454444432 221    1  223344445666776666654 3666666664 5678877665544333  


Q ss_pred             ---HHHHHHHHHHhhhcccCCcCCCcccccccccCccchHHHHHHHHHHHHH-HHHHhhcccccCCCCCCCcchhhhHHH
Q 013991          181 ---IGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDA  256 (432)
Q Consensus       181 ---~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~  256 (432)
                         ++..++|.+++....       ..       ...|.....+.+++.++. ++.....||+++.+.++.   .     
T Consensus       159 ~~~~~~~~~p~i~~~~g~-------~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~~~~~~---~-----  216 (448)
T PRK09848        159 FVCLAFLIGPSIKNSSPE-------EM-------VSVYHFWTIVLAIAGMVLYFICFKSTRENVVRIVAQP---S-----  216 (448)
T ss_pred             HHHHHHHHHHHHHHhCCC-------ch-------hhhHHHHHHHHHHHHHHHHHHHHcCcEeccCCCccCC---C-----
Confidence               455556666543321       00       001111112222222222 222334555432211100   0     


Q ss_pred             hhhhhhhhhhhhccCCCCccccccchhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHH
Q 013991          257 LESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSL  336 (432)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~  336 (432)
                                    ....++.++|||+++...+..++............+.|.++.     +|.++...+.......++.
T Consensus       217 --------------~~~~~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~  277 (448)
T PRK09848        217 --------------LKISLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYV-----LNDTGLFTVLVLVQNLVGT  277 (448)
T ss_pred             --------------HHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeee-----cCChHHHHHHHHHHHHHHH
Confidence                          011355688999998888777777776666666667666654     5666655554444444555


Q ss_pred             HHHHHHhHHHHHHHhChhHHHHHHHHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcccccc-
Q 013991          337 LVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRV-  415 (432)
Q Consensus       337 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-  415 (432)
                      +++. ++.+++.||+++++.+.++..+..++.+.+.+... .  ..+ ...+...+.+++.+...+...++.++..|.+ 
T Consensus       278 ~~~~-~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~-~--~~~-~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~  352 (448)
T PRK09848        278 VASA-PLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSV-W--SLP-VALVALAIASIGQGVTMTVMWALEADTVEYGE  352 (448)
T ss_pred             HHHH-HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCc-h--hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence            5665 68899999999999999988877776665543221 1  112 2334445566677777888888988888754 


Q ss_pred             ------chhhhhhHHHHHh
Q 013991          416 ------LTYTLSCHFWFVK  428 (432)
Q Consensus       416 ------~~g~~~~~~~~~~  428 (432)
                            .+|..++++.+.+
T Consensus       353 ~~~g~r~~G~~~~~~~~~~  371 (448)
T PRK09848        353 YLTGVRIEGLTYSLFSFTR  371 (448)
T ss_pred             HhhCccchhHHHHHHHHHH
Confidence                  3478888877754

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.79  E-value=5.2e-17  Score=149.18  Aligned_cols=337  Identities=15%  Similarity=0.124  Sum_probs=208.8

Q ss_pred             chhHHHHHHHHHHhhccccchhhhHHHHHHH-hcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHH
Q 013991           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (432)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~  118 (432)
                      ++..+......+...+..+...|..+...++ .|++.++      +|.+.++..+...+.+|+.|.++||.|.||-++..
T Consensus         6 ~~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~------iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~   79 (412)
T PF01306_consen    6 NKNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTE------IGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWF   79 (412)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH------HHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHH------HHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHH
Confidence            3556666777777777888889999877764 8999999      99999999999999999999999999976655443


Q ss_pred             HHHHH--HHH-HHHhhhhhH-HHHHHHHHHHhhhccc----hhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHH
Q 013991          119 TASVV--IFN-TLFGLSVNF-WMAVLTRFLLGSLNGL----LGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPAL  189 (432)
Q Consensus       119 ~~~~~--~~~-~~~~~~~~~-~~l~~~r~~~G~~~g~----~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~  189 (432)
                      ..+..  .+. +...+.+-. ..+.++-++.|+..+.    ..++ -+++.+..  ++.+.-.|-..+..++|.+++..+
T Consensus        80 i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~  157 (412)
T PF01306_consen   80 IAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLL  157 (412)
T ss_dssp             HHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHH
Confidence            32222  222 222222211 1122233333443232    2222 44443332  233455666788889999999999


Q ss_pred             HhhhcccCCcCCCcccccccccCccchHHHHHHHHHHHHHHHHHhhc-ccccCCCCCCCcchhhhHHHhhhhhhhhhhhh
Q 013991          190 GGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL-PETLHRHNDDDDSCDVSYDALESASAEVKEEE  268 (432)
Q Consensus       190 ~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (432)
                      +|.+.+                . +-...+++....+++..+..... |+.++..+..+.+..+.              +
T Consensus       158 ~G~L~~----------------i-~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~~~~~--------------~  206 (412)
T PF01306_consen  158 AGILFN----------------I-NPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADALGAKK--------------D  206 (412)
T ss_dssp             HHHHHH----------------H-HHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTSSS-----------------
T ss_pred             hheeee----------------e-CccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcccccCC--------------C
Confidence            999885                1 11233344444444433333333 33332221111100000              0


Q ss_pred             ccCCCCccccccchhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHH
Q 013991          269 GREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLE  348 (432)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~  348 (432)
                      +.+.+...+++|+|++|...+...........+...++.|.......  .+.+....|++.+..-+.-++.- .+.+++.
T Consensus       207 ~~~~~~~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~--~~~g~~~~G~l~s~~v~~E~~~m-~~~p~li  283 (412)
T PF01306_consen  207 KVSLKDVLSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQS--AGQGNQMYGYLWSVQVFLEALMM-FFSPWLI  283 (412)
T ss_dssp             ---HHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSS--HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred             CCcHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cccChhHHhHHHHHHHHHHHHHH-HHHHHHH
Confidence            00112346789999999887766666666666666666666543211  35566778888888777776664 6899999


Q ss_pred             HHhChhHHHHHHHHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHH
Q 013991          349 RILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHF  424 (432)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~  424 (432)
                      +|+|.|+.++++..+..+=....++.+...      .+...-.+.+.-.........-++++..|++..++.+.+.
T Consensus       284 ~rig~k~~Lllag~i~~iRi~~~~~~~~~~------~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~  353 (412)
T PF01306_consen  284 NRIGAKNLLLLAGVIMAIRIIGSGFATNPW------VISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVG  353 (412)
T ss_dssp             HHH-HHHHHHHHHHHHHHHHHHHHT--SHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHH
T ss_pred             HhcChHhHHHHHHHHHHHHHHHHhhhcchH------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHH
Confidence            999999999999998888888877766544      4555666666666677778888999999999988887764

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.78  E-value=9.2e-17  Score=151.38  Aligned_cols=346  Identities=18%  Similarity=0.245  Sum_probs=229.9

Q ss_pred             HHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHH
Q 013991           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (432)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~  124 (432)
                      .+++..+..++......+..+.....++.+... ......+.......+...+.++..|.++||+|||..+.+..+...+
T Consensus        26 ~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~-~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l  104 (463)
T KOG2816|consen   26 LLFLYMFSWGLSSTVMTNVILYLACTFGDDYQL-ENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTIL  104 (463)
T ss_pred             HHHHHHHHHHhcCcchhhhhhhhhcccccCccc-hhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHH
Confidence            444455555555555555555555555444332 1111223333333677789999999999999999999999999888


Q ss_pred             HHHHHhhhhhHHHHHHHHHHHhhhccc---hhhHHhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCcCC
Q 013991          125 FNTLFGLSVNFWMAVLTRFLLGSLNGL---LGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYP  201 (432)
Q Consensus       125 ~~~~~~~~~~~~~l~~~r~~~G~~~g~---~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~  201 (432)
                      ..+...+..  |++++   +.|+.++.   .....++++|....++|...+++.+.....+..++|.+++.+..      
T Consensus       105 ~~~~~~~~~--~~~~~---~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~------  173 (463)
T KOG2816|consen  105 PALCLLFQG--YWFFL---LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVK------  173 (463)
T ss_pred             hHHHHHHHH--HHHhh---hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH------
Confidence            888777766  33333   55554333   23348999999999999999999999999999999999999987      


Q ss_pred             CcccccccccCccchHHHHHHHHHHHHHH-HHHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhccCCCCcccccc
Q 013991          202 NLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLK  280 (432)
Q Consensus       202 ~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (432)
                                ..+...++.+..+..+... ...+++||+..+++........    .+...... ++..+.....+..-.
T Consensus       174 ----------~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~  238 (463)
T KOG2816|consen  174 ----------FLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLRE----LTPGSLDS-SHVADAFQSLTKVGP  238 (463)
T ss_pred             ----------hcCchHHHHHHHHHHHHHHHHHhhccccccCccccccccccc----cCCCcccc-hhhhhhhhhhcccCC
Confidence                      4566677777777776644 4567789987655443100000    00000000 000000111111112


Q ss_pred             chhHHHHHHHHHHHHHHhhh-HHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhChhHHHHH
Q 013991          281 NWPLMSSIIVYCVFSLHDMA-YSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARI  359 (432)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  359 (432)
                      +|..+.+.....+....... .....+.|...+     ++|+..+.+.+.+..+....+++.+..+.+.+.++.++....
T Consensus       239 ~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~-----f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~l  313 (463)
T KOG2816|consen  239 DRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAK-----FGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISL  313 (463)
T ss_pred             CccchHHHHHHHHHHHHHhcCceeEEEEEEeee-----cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhH
Confidence            23333333333333333222 221334555555     899999999999999999999998888899999999999889


Q ss_pred             HHHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHHHHhh
Q 013991          360 AGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWFVKL  429 (432)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~~~  429 (432)
                      |+....+....+++....+       ................|...++.+..++++++|++.++...++.
T Consensus       314 Gl~~~~~~~~~~af~~~~w-------~~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~  376 (463)
T KOG2816|consen  314 GLLSEFLQLLLFAFATETW-------MMFAAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEG  376 (463)
T ss_pred             HHHHHHHHHHHHHHhccch-------hhhHHHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHH
Confidence            9988888888888877655       22233333446677889999999999999999999999877654

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.78  E-value=4e-17  Score=151.63  Aligned_cols=200  Identities=18%  Similarity=0.235  Sum_probs=161.6

Q ss_pred             CCCCchhHHHHHHHHHHhhccccchhhhHHHHHHH--hcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCC-h
Q 013991           36 SGLPITELFSIWIIVLCTALPISSLFPFLYFMIKD--FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGR-K  112 (432)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Gr-r  112 (432)
                      ++.+||.+++..+..++.....+++.+..-.+.++  .+.+.+.      .|++.++..++.+++++.+|++..|.++ |
T Consensus        29 ~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~f------fG~viaa~slg~~i~~liF~~Ws~k~~~~k  102 (488)
T KOG2325|consen   29 RKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATF------FGLVIAASSLGHAIFSLIFGIWSNKTGSVK  102 (488)
T ss_pred             cCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcch------hhHHHHHHHHHHHhcchhhcccccccCCcc
Confidence            45678889999999999999999998888777777  4555555      9999999999999999999999999997 8


Q ss_pred             HHHHHHHHHHHHHHHHHh-h---hh-hHHHHHHHHHHHhhhccchhhHHhhhhhhcccchhhhhhhhHHHHHHHHHHHHH
Q 013991          113 PVIIMGTASVVIFNTLFG-L---SV-NFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGP  187 (432)
Q Consensus       113 ~~l~~~~~~~~~~~~~~~-~---~~-~~~~l~~~r~~~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~  187 (432)
                      +.++.|.++..++++++. +   .+ .-+.++++|++.|+|.|......+|+++....++|.++++..+.+..+|.++||
T Consensus       103 ~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp  182 (488)
T KOG2325|consen  103 KPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGP  182 (488)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhH
Confidence            999999999999999993 3   23 678899999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhcccCCcCCCccccccc--ccCccchHHHHHHHHHHHHHH-HHHhhcccccCCCCCC
Q 013991          188 ALGGFLAQPAEKYPNLFSSESL--FGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDD  246 (432)
Q Consensus       188 ~~~~~l~~~~~~~~~~~gw~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~  246 (432)
                      .++..+.....     -|+...  ..-+.+..|.++++++.++.+ +..++++|..+...++
T Consensus       183 ~~q~~f~~Lg~-----~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~  239 (488)
T KOG2325|consen  183 TIQLAFTPLGE-----KGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDK  239 (488)
T ss_pred             HHHHHHhhhcC-----CceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCcccc
Confidence            99888875331     122111  112346677788888877744 4456678876655433

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.77  E-value=1.5e-16  Score=147.55  Aligned_cols=336  Identities=17%  Similarity=0.150  Sum_probs=233.3

Q ss_pred             CCCchhHHHHHHHHHHhhccccchhhhHH-HHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhc----cCC
Q 013991           37 GLPITELFSIWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR----YGR  111 (432)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr----~Gr  111 (432)
                      +.+.++...-....+............+. ++.+.+|++...      +|.+..+.-+--++.-|+.|.++||    +||
T Consensus         8 kLs~~eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~------aG~iflv~RiiDAi~DP~~G~i~D~t~~r~Gr   81 (467)
T COG2211           8 KLSLKEKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAAL------AGTIFLVARIIDAITDPIMGFIVDRTRSRWGR   81 (467)
T ss_pred             cccHHHHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHH------HHHHHHHHHHHHHHhcchheeeeccccccccc
Confidence            44555555555555555555555555554 667889999998      9999888888889999999999995    787


Q ss_pred             -hHHHHHHHHHHHHHHHHHhhhhh------HHHHHHHHHHHhhhccchh-hHHhhhhhhcc-cchhhhhhhhHHHHHHHH
Q 013991          112 -KPVIIMGTASVVIFNTLFGLSVN------FWMAVLTRFLLGSLNGLLG-PIKAYACEIFR-EEHQALGLSTVSTAWGIG  182 (432)
Q Consensus       112 -r~~l~~~~~~~~~~~~~~~~~~~------~~~l~~~r~~~G~~~g~~~-~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g  182 (432)
                       |+.++.+.+..++.+.++-.+++      ....++...+.+++-.... |-.++.+|+.+ ++||.+..+.-..+.++|
T Consensus        82 fRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g  161 (467)
T COG2211          82 FRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLG  161 (467)
T ss_pred             ccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHH
Confidence             45677788888888888877663      3445566677888766654 45888888886 789999999999999999


Q ss_pred             HHHHHHHHhhhcccCCcCCCcccccccccCccchHHHHHHHHHHHHHHH-HHhhcccccCCCCCCCcchhhhHHHhhhhh
Q 013991          183 LIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESAS  261 (432)
Q Consensus       183 ~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~  261 (432)
                      ..+...+.+.+....++.+.         ..+|+....+.+++.++.++ +.+..+|...+....++..           
T Consensus       162 ~~l~~~~~~plv~~~g~~~~---------~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~~-----------  221 (467)
T COG2211         162 GLLVAVLFPPLVKLFGGGDK---------ALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKTGV-----------  221 (467)
T ss_pred             HHHHHHHHHHHHHHhCCCcc---------hhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCcccc-----------
Confidence            77776666666653222111         33566666666666665443 3445666554222111100           


Q ss_pred             hhhhhhhccCCCCccccccchhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHH
Q 013991          262 AEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQL  341 (432)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~  341 (432)
                            +.+........++|++++..++...+.........+....|.+..     +|.+.......+.......+++. 
T Consensus       222 ------~~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~-----lg~~~l~~~~~~~~~~~~~l~~~-  289 (467)
T COG2211         222 ------KLKLKDSFLLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYV-----LGDPELFAYLLLLASGAGLLIGL-  289 (467)
T ss_pred             ------cccHHHHHHHHHccchHHHHHHHHHHHHHHHHHHhhhhheeEEEE-----cCChHHHHHHHHHHHHHHHHHHH-
Confidence                  001112334678999998888877777777666666777666665     67677777777666666666655 


Q ss_pred             HhHHHHHHHhChhHHHHHHHHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccc
Q 013991          342 SLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVR  414 (432)
Q Consensus       342 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  414 (432)
                      ++.+++.+|+|+|++..++.++.+++.+++.+....    ...+.++..++.+.+.+...+..+++++|.++-
T Consensus       290 ~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~----~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDy  358 (467)
T COG2211         290 ILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAG----SVVLIVVALIIAGVGTGIANPLPWAMVADTVDY  358 (467)
T ss_pred             HhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCc----chHHHHHHHHHHHHHhhccccccHHHhcchhhH
Confidence            689999999999999999999988888877766522    223444555666778888889999999998763

>TIGR01272 gluP glucose/galactose transporter

Probab=99.77  E-value=1.6e-16  Score=144.53  Aligned_cols=261  Identities=15%  Similarity=0.078  Sum_probs=178.1

Q ss_pred             hhhhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCcCCC-ccccc
Q 013991          130 GLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPN-LFSSE  207 (432)
Q Consensus       130 ~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~-~~gw~  207 (432)
                      +...+++.++++-++.|.|.+...+. ++++++..++|++.+.+++.+.++++|..+||.+++.+......... ..+-.
T Consensus         5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~   84 (310)
T TIGR01272         5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA   84 (310)
T ss_pred             HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence            34578999999999999999999886 99999999999999999999999999999999999988842110000 00000


Q ss_pred             ccccCccchHHHHHHHHHHHHHHHHHhh--cccccCCCCCCCcchhhhHHHhhhhhhhhhhhhccCCCCccccccchhHH
Q 013991          208 SLFGKFPYFLPCLCISLFAFGVTIAAFW--LPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLM  285 (432)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (432)
                      ... .+.|+.++++.+...++..+.+.+  +||.++++.+     +..              + ++....++.+++|.++
T Consensus        85 ~~~-~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~~~~~-----~~~--------------~-~~~~~~~~~~~~~~~~  143 (310)
T TIGR01272        85 NAE-AAKVHTPYLLLAGALAVLAIIFAFLPLPELQEADVA-----RVS--------------S-GDTTQKTSAFQFTHLV  143 (310)
T ss_pred             hHH-HHHHHHHHHHHHHHHHHHHHHHHHccCCCCCccccc-----ccc--------------c-ccccchhhHHhhHHHH
Confidence            000 135677777555544443333333  3442211100     000              0 0001123456778888


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhChhHHHHHHHHHHH
Q 013991          286 SSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTI  365 (432)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  365 (432)
                      ...+..+++.....+...+.+.|+.+..   .+|+++.+.+...+....+..+++ ++++++.||+++++.+.++..+..
T Consensus       144 l~~~~~f~yvg~e~~~~~w~~~yl~~~~---~~g~s~~~a~~~~s~~~~~~~iGr-~~~~~l~~r~g~~~~l~~~~~l~~  219 (310)
T TIGR01272       144 LGALGIFVYVGAEVSAGSFLVNFLSDPH---ALGLPEDQAAHFTAYTWGGAMVGR-FIGSAVMPMISQGRYLAFNAFLAV  219 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcc---cCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCHHHHHHHHHHHHH
Confidence            8777888877789999999999996431   158899999999999999999998 599999999999998888777766


Q ss_pred             HHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhH
Q 013991          366 PLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCH  423 (432)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~  423 (432)
                      ++.++...... .  .    ......+.+++.+..+|...+...+..|++ .+++++.
T Consensus       220 ~~~~l~~~~~~-~--~----~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai  269 (310)
T TIGR01272       220 LLSIGAALTHG-Y--V----AMWFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGI  269 (310)
T ss_pred             HHHHHHHHcCC-H--H----HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHH
Confidence            65544332221 1  1    112333566788889999999998888765 3444444

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK11462 putative transporter; Provisional

Probab=99.76  E-value=1.4e-15  Score=146.40  Aligned_cols=327  Identities=13%  Similarity=0.049  Sum_probs=193.9

Q ss_pred             CchhHHHHHHHHHHhhccccchhhhH-HHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhc----cCChH
Q 013991           39 PITELFSIWIIVLCTALPISSLFPFL-YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR----YGRKP  113 (432)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr----~Grr~  113 (432)
                      ++++-+.-.++.+...+........+ .++.+..|++...      +|.+..+.-+--++..|+.|.++||    +||||
T Consensus         7 ~~~~k~~Yg~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~------~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~r   80 (460)
T PRK11462          7 SVKEKIGYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGF------VGTMFLVARALDAISDPCMGLLADRTRSRWGKFR   80 (460)
T ss_pred             cHhHHHhhccchhhhhHHHHHHHHHHHHHHHHhhCCCHHH------HHHHHHHHHHHHHHHhhhheehhccCCCCCCCcc
Confidence            33444333344444444444444444 4677889999998      9999999999999999999999995    78865


Q ss_pred             -HHHHHHHHHHHHHHHHhhhhh------HHHHHHHHHHHhhhccchhh-HHhhhhhhcc-cchhhhhhhhHHHHHHHHHH
Q 013991          114 -VIIMGTASVVIFNTLFGLSVN------FWMAVLTRFLLGSLNGLLGP-IKAYACEIFR-EEHQALGLSTVSTAWGIGLI  184 (432)
Q Consensus       114 -~l~~~~~~~~~~~~~~~~~~~------~~~l~~~r~~~G~~~g~~~~-~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~  184 (432)
                       .++++.+..+++.+++-..++      ...+++..++..++...... -.++.+|..+ ++||.+..+....+..+|..
T Consensus        81 p~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~  160 (460)
T PRK11462         81 PWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGM  160 (460)
T ss_pred             hhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence             555677777777766654432      33455555666666555544 4888889887 89999999999999999988


Q ss_pred             HHHHHHhhhcccCCcCCCcccccccccCccchHHHHHHHHHHHHHHHH-HhhcccccCCCCCCCcchhhhHHHhhhhhhh
Q 013991          185 IGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYDALESASAE  263 (432)
Q Consensus       185 ~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~  263 (432)
                      +++.+...+.+..++...         ..+|+....+.+++.++..+. ....+|.++.++++.   + .          
T Consensus       161 ~~~~~~~plv~~~g~~~~---------~~g~~~~~~i~~ii~~i~~~i~~~~~kE~~~~~~~~~---~-~----------  217 (460)
T PRK11462        161 LSTVLMMPLVNLIGGDNK---------PLGFQGGIAVLSVVAFMMLAFCFFTTKERVEAPPTTT---S-M----------  217 (460)
T ss_pred             HHHHHHHHHHHHhCCCch---------hhhHHHHHHHHHHHHHHHHHHHHhcceeccCCCccCC---C-H----------
Confidence            888876665542111000         234555445555554443333 333455432211100   0 0          


Q ss_pred             hhhhhccCCCCccccccchhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHh
Q 013991          264 VKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSL  343 (432)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~  343 (432)
                              ....+..++|++++......++..............|....     +| ++...+.++....+..+++. ++
T Consensus       218 --------~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~-----~g-~~~~~~~~l~~~~i~~iig~-~l  282 (460)
T PRK11462        218 --------REDLRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWI-----LG-TPEVFVAFLTTYCVGNLIGS-AL  282 (460)
T ss_pred             --------HHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhh-----cC-ChHHHHHHHHHHHHHHHHHH-HH
Confidence                    11345667888887766555555544444444444443332     23 23344556666677777776 68


Q ss_pred             HHHHHHHhChhHHHHHHHHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcccc
Q 013991          344 YPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVV  413 (432)
Q Consensus       344 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  413 (432)
                      ++++.||+++|+....+..+..+...++.+.....   . ....+..++.+++.+...+..+++..|..+
T Consensus       283 ~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d  348 (460)
T PRK11462        283 AKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQA---S-ITMFVFIFVIGVLHQLVTPIQWVMMSDTVD  348 (460)
T ss_pred             HHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhH---H-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence            89999999998887655444333333222222111   1 111222233444555556666778888777

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.75  E-value=4.5e-15  Score=141.61  Aligned_cols=321  Identities=16%  Similarity=0.117  Sum_probs=218.2

Q ss_pred             hhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHH-HHHHHHHHHHHHHhhh-hh-HHHHHHHHHHHhhhccchhhH-H
Q 013991           81 GSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII-MGTASVVIFNTLFGLS-VN-FWMAVLTRFLLGSLNGLLGPI-K  156 (432)
Q Consensus        81 ~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~-~~~~~~~~~~~~~~~~-~~-~~~l~~~r~~~G~~~g~~~~~-~  156 (432)
                      +.+.++..++..+..++..|+.|.++|+-|+||.++ +...+..+++.++.+. ++ ++...+..++.-++.+...+. .
T Consensus        69 ~s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyn  148 (477)
T PF11700_consen   69 SSLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYN  148 (477)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455678889999999999999999999999766554 4455555666666653 33 333333444444455555555 9


Q ss_pred             hhhhhhcccchh--------------------------hhhhhhHHHHHHHHHHHHHHHHhhhcccCCcCCCcccccccc
Q 013991          157 AYACEIFREEHQ--------------------------ALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLF  210 (432)
Q Consensus       157 ~~i~~~~~~~~r--------------------------~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~  210 (432)
                      +++.|+.+++++                          ++..+.-.....+|.++.-.+.-.+....+..        .-
T Consensus       149 a~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~--------~~  220 (477)
T PF11700_consen  149 AYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGST--------AS  220 (477)
T ss_pred             HHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCc--------cc
Confidence            999999999888                          88888887788888888777766655422111        00


Q ss_pred             cCccchHHHHHHHHHHHH-HHHHHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhccCCCCccccccchhHHHHHH
Q 013991          211 GKFPYFLPCLCISLFAFG-VTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSII  289 (432)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (432)
                      ..++.|..+.+.++..++ .+...+++||.++.+..++.. .......++           -....+++.|.|.....++
T Consensus       221 ~~~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~-~~~~~g~~~-----------l~~t~k~~~~~~~~~~fLi  288 (477)
T PF11700_consen  221 NTWAIRVAFLIVALWWLVFSIPLFLWLPDRPGPRPLPSGS-SYLRFGFKR-----------LWRTFKEIRKLRQLFLFLI  288 (477)
T ss_pred             cchhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcch-hHHHHHHHH-----------HHHHHHHHHhChHHHHHHH
Confidence            134457666777766655 444456778776532111111 100000000           1123455667788888889


Q ss_pred             HHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhChh--HHHHHHHHHHHHH
Q 013991          290 VYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPI--MVARIAGVLTIPL  367 (432)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~  367 (432)
                      .++++.-...+...+...|..+.     +|++..+...+.....+.++++. ++.+++.||+|.|  +++..+..+..+.
T Consensus       289 a~~l~~dg~~ti~~~~~i~a~~~-----lg~s~~~l~~~~l~~~i~a~~Ga-~~~g~l~~r~g~k~~~~l~~~l~~~~~i  362 (477)
T PF11700_consen  289 AYFLYSDGVNTIISFAGIYATEV-----LGMSTTQLIVFGLVVQIVAIIGA-LLFGWLQDRFGPKTKRTLLISLILWIII  362 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-----cCcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCchhHHHHHHHHHHHHH
Confidence            99988888888888888888876     89999999999999999999998 5889999999998  7766665554222


Q ss_pred             HH--HhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHHHH
Q 013991          368 LT--SYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWFV  427 (432)
Q Consensus       368 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~  427 (432)
                      .+  .+++.....+......+++..++.|.+.+...+...++.++..|+++.+...|.|.+.
T Consensus       363 ~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~  424 (477)
T PF11700_consen  363 PLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAIT  424 (477)
T ss_pred             HHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence            21  1111111111122234666777888899999999999999999999999999998765

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.71  E-value=2.1e-15  Score=136.41  Aligned_cols=341  Identities=12%  Similarity=0.076  Sum_probs=222.5

Q ss_pred             HHHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHH
Q 013991           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV  122 (432)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~  122 (432)
                      ++...+..+.+.+....+.+...+..+.+| +.+.      .-|..-+|++.++...+++-|+.||+|-|...+++..+.
T Consensus        47 Ll~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~------~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln  119 (480)
T KOG2563|consen   47 LLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSA------ADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLN  119 (480)
T ss_pred             HHHHHHHHhcCcchheeehhHHHHHHHHhc-chHH------HHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHH
Confidence            334555666677777777787778888888 5555      789999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhh------hHH--HHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhh
Q 013991          123 VIFNTLFGLSV------NFW--MAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL  193 (432)
Q Consensus       123 ~~~~~~~~~~~------~~~--~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  193 (432)
                      +++..+-..+.      .++  ....+..+.+.++-.+... .-+..-|+++++|..+..+-.++..+|.++|.++...+
T Consensus       120 ~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppil  199 (480)
T KOG2563|consen  120 GIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPIL  199 (480)
T ss_pred             HHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhcccee
Confidence            99998877653      344  5556667777666555555 55667889999999999999999999999999999988


Q ss_pred             cccCCcCCCcccccccccCccchHHHHHHHHHHHH-HHHHHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhccCC
Q 013991          194 AQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFG-VTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREA  272 (432)
Q Consensus       194 ~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (432)
                      .....+.. ...       |.....++....+..+ ..+..+..++.|+.+.+..+....               ...-.
T Consensus       200 V~~~~~~~-~~~-------~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~~---------------~~~f~  256 (480)
T KOG2563|consen  200 VPSSKDSE-DNS-------WLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAALQ---------------DASFP  256 (480)
T ss_pred             cCCCCCcc-hhH-------HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhhh---------------cCcHH
Confidence            87432111 111       1122223433333333 223333344444333222111100               01123


Q ss_pred             CCccccccchhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhC
Q 013991          273 TPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG  352 (432)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~  352 (432)
                      +..++.++|+++....+.+..-...+.+..+.+..-+..      -|++...+|++.....+.+.+++ .+.+.+.||.+
T Consensus       257 ~si~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~~------sgY~~~~aG~ig~l~iv~Gmlga-~~~gii~Dktk  329 (480)
T KOG2563|consen  257 KSIKSCFKNRQFIILAICYGIGLGLFNSLSTLLNLALCP------SGYEGVFAGYIGALMIVAGMLGA-LASGIIADKTK  329 (480)
T ss_pred             HHHHHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhcccc------ccCCccccchhHHHHHHHHHHHH-HHHHhhhhhhh
Confidence            456788999999888777777666655555554433332      36667889999999889999998 58888888876


Q ss_pred             hhHH-HHHHHHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhh
Q 013991          353 PIMV-ARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSC  422 (432)
Q Consensus       353 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~  422 (432)
                      .-+. .++......++...+.......  ...++++....+.+++..+.+|....+..|..=+...++.+|
T Consensus       330 ~fk~~~~v~~~~~~v~~~~l~~~t~~~--~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsG  398 (480)
T KOG2563|consen  330 KFKLTTLVLYLFALVGTLMLLTCTLFL--GDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSG  398 (480)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhccC--CceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccce
Confidence            5443 3333333333322222222212  223345566667788888888988888888764444444444

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.70  E-value=3e-14  Score=131.20  Aligned_cols=364  Identities=14%  Similarity=0.137  Sum_probs=220.6

Q ss_pred             hhHHHHHHHHHHhhccccchhhhHH-HHHHHhc----CCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhc-cCChHH
Q 013991           41 TELFSIWIIVLCTALPISSLFPFLY-FMIKDFQ----IAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKPV  114 (432)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~  114 (432)
                      |.++.++..-+-.-++++.+-..+. ++..+++    .++++      +.-+.++|..-.=+..+++|+++|| +|+|+.
T Consensus        21 r~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~------A~~l~~~y~slVY~t~i~GG~laDr~LG~~~t   94 (498)
T COG3104          21 RGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETH------ATGLFSAYGSLVYLTPIIGGWLADRVLGTRRT   94 (498)
T ss_pred             chHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHh------hHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH
Confidence            5677777788888887776666554 5566666    88877      6666666655555788999999999 799999


Q ss_pred             HHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHhhhccchhhH-Hhhhhhhcccc--hhhhhhhhHHHHHHHHHHHHHHH
Q 013991          115 IIMGTASVVIFNTLFGLSV--NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREE--HQALGLSTVSTAWGIGLIIGPAL  189 (432)
Q Consensus       115 l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~g~~~  189 (432)
                      ++.|.++..++.++.+.+.  +...++++-++.++|.|.+-+. .+++.|.+|++  +|...++++.++.++|+.++|.+
T Consensus        95 I~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i  174 (498)
T COG3104          95 IVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPII  174 (498)
T ss_pred             HHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHH
Confidence            9999999999999999884  7888999999999999999875 99999999864  47788999999999999999999


Q ss_pred             HhhhcccCCcCCCcccccccccCccchHHHHHHHHHHHHHHHHHhhcccccCC----CCCCCcchhhhH-----------
Q 013991          190 GGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHR----HNDDDDSCDVSY-----------  254 (432)
Q Consensus       190 ~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~----~~~~~~~~~~~~-----------  254 (432)
                      .+++.+                +++|...|..+++-....++.....++....    .+..+.+.....           
T Consensus       175 ~~~~~~----------------~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (498)
T COG3104         175 TGLLAI----------------NYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMIL  238 (498)
T ss_pred             HHHHHH----------------hhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHH
Confidence            999998                5555555567666655555554444432211    111111111000           


Q ss_pred             HHh-----hhhhhhhh--------h---hhccCCCCc--cccccchhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCC
Q 013991          255 DAL-----ESASAEVK--------E---EEGREATPK--KSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLG  316 (432)
Q Consensus       255 ~~~-----~~~~~~~~--------~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (432)
                      ...     ..+.-...        +   ..+....+.  .+.-|-.....+.+...++...+....+.+..|..+....+
T Consensus       239 ~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~  318 (498)
T COG3104         239 AALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVFDERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQ  318 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhccc
Confidence            000     00000000        0   000000111  11101111122223333333333333444455544432222


Q ss_pred             CcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhChh-------HHHHHHHHHHHHHHHHhhHHHhh----hhhHHHHH
Q 013991          317 GLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPI-------MVARIAGVLTIPLLTSYPYIAML----SGFGLAFL  385 (432)
Q Consensus       317 ~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  385 (432)
                      -+|++ .......+...+..++.+ ++..++-.+.+++       .=..+++.++..+++++......    .+.....+
T Consensus       319 ~~g~~-vp~~~fQslNp~~Iii~~-pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~  396 (498)
T COG3104         319 IFGFE-VPPAWFQSLNPFFIILFS-PILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWW  396 (498)
T ss_pred             cccee-cCHHHHHhhCHHHHHHHH-HHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHH
Confidence            23322 223445555555555554 3444444442221       12234555555555555444111    22233445


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHHHHh
Q 013991          386 LNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWFVK  428 (432)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~~  428 (432)
                      .....++..++.-...|...+++.+.+|+...+.+.+++.+..
T Consensus       397 lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~  439 (498)
T COG3104         397 LVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTV  439 (498)
T ss_pred             HHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence            5566667777888889999999999999999999988887653

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.69  E-value=2.6e-18  Score=166.03  Aligned_cols=308  Identities=17%  Similarity=0.220  Sum_probs=2.9

Q ss_pred             HHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHH
Q 013991           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (432)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~  124 (432)
                      .+++..+...+..+.....+..+.+.|+++..+      .|++.+.+-++..+..++..++.+|..|-|.+-+|.++.++
T Consensus         7 ~~~~~~~~q~~~~g~~~~~lttiErRF~l~S~~------~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~   80 (539)
T PF03137_consen    7 FLCLLGLFQMMVSGYVNSSLTTIERRFGLSSSQ------SGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGL   80 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHH
Confidence            445555666666667777888999999999999      99999999999999999999999998888999999999999


Q ss_pred             HHHHHhhhh--------------------------------------------------hHHHHHHHHHHHhhhccchhh
Q 013991          125 FNTLFGLSV--------------------------------------------------NFWMAVLTRFLLGSLNGLLGP  154 (432)
Q Consensus       125 ~~~~~~~~~--------------------------------------------------~~~~l~~~r~~~G~~~g~~~~  154 (432)
                      +++++++.+                                                  -+..++++.++.|+|.....+
T Consensus        81 g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~t  160 (539)
T PF03137_consen   81 GSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYT  160 (539)
T ss_dssp             -----------------------------------------------------------------------SSS------
T ss_pred             HHHHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCcc
Confidence            999886410                                                  124677889999999999988


Q ss_pred             H-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCcCCCc-------ccccccccCccchHHHHHHHHHH
Q 013991          155 I-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNL-------FSSESLFGKFPYFLPCLCISLFA  226 (432)
Q Consensus       155 ~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~-------~gw~~~~~~~~~~~~~~~~~~~~  226 (432)
                      . .+|+-|..++++-+..+|+..+...+|.++|.++++.+...-.+++..       -.....| -..||..+++.+.+.
T Consensus       161 LG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~W-vGAWWLGfli~g~~~  239 (539)
T PF03137_consen  161 LGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRW-VGAWWLGFLICGILL  239 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccH-HHHHHHHHHHHHHHH
Confidence            7 999999999999999999999999999999999999888643222110       0111122 346888888888888


Q ss_pred             HHHHHHHhhcccccCCCCCCCcchhhhH---HHhhhhh-hhh------hhhhccCCCCccccccchhHHHHHHHHHHHHH
Q 013991          227 FGVTIAAFWLPETLHRHNDDDDSCDVSY---DALESAS-AEV------KEEEGREATPKKSLLKNWPLMSSIIVYCVFSL  296 (432)
Q Consensus       227 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~---~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (432)
                      ++..+.++.+|+..+..++..++.+...   ++.++.. ++.      .+..++-+...+.+++||.+....+.......
T Consensus       240 ~l~aipl~~FPk~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~  319 (539)
T PF03137_consen  240 FLSAIPLFFFPKKLPGTSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESF  319 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHcCCccCCCcccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence            7777777777766544411111111000   0000000 000      11223445667889999999999999999999


Q ss_pred             HhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhC--hhHHHHHHHHHH
Q 013991          297 HDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG--PIMVARIAGVLT  364 (432)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~  364 (432)
                      ...++.++.|.|++..     ++.++.+++.+.....+.+...+.+++|++.+|++  .|+.+....+..
T Consensus       320 ~~~G~~tF~pKylE~Q-----F~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~  384 (539)
T PF03137_consen  320 IVSGFATFLPKYLESQ-----FGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVS  384 (539)
T ss_dssp             ----------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHH-----hCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHH
Confidence            9999999999999887     89999999999888888666666679999999874  344444443333

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.68  E-value=3.6e-14  Score=127.85  Aligned_cols=322  Identities=11%  Similarity=-0.025  Sum_probs=211.4

Q ss_pred             chhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHH-HHHHHHHHHHHHHHhhhhh--HH-HHHHHHHHHhhhccchhh
Q 013991           79 DIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVI-IMGTASVVIFNTLFGLSVN--FW-MAVLTRFLLGSLNGLLGP  154 (432)
Q Consensus        79 ~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l-~~~~~~~~~~~~~~~~~~~--~~-~l~~~r~~~G~~~g~~~~  154 (432)
                      +.+.+.+...++..+...+.+|+.|.++|+.|+||.. -....+..++..+..++++  ++ ..++..++..++.....+
T Consensus        55 ~~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~V  134 (438)
T COG2270          55 SSTAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNV  134 (438)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhhe
Confidence            3456689999999999999999999999999976654 4445555555556655544  44 445555667776555555


Q ss_pred             H-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHH--hhhcccCCcCC-CcccccccccCccchHHHHHHHHHHHHHH
Q 013991          155 I-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG--GFLAQPAEKYP-NLFSSESLFGKFPYFLPCLCISLFAFGVT  230 (432)
Q Consensus       155 ~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~--~~l~~~~~~~~-~~~gw~~~~~~~~~~~~~~~~~~~~~~~~  230 (432)
                      . .+++.+..++++-++..++-.....+|..+.-+..  ..+....+..+ ..++-...- ...-|..+.++++..++..
T Consensus       135 fyds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~ri~~~l~A~W~li~~  213 (438)
T COG2270         135 FYDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPAD-GEDVRITGLLAALWWLLFA  213 (438)
T ss_pred             ehhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccc-cccchhHHHHHHHHHHHHH
Confidence            5 99999999998888777665555555555443332  12211111110 011111112 3446666677777666654


Q ss_pred             HHH-hhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhccCCCCccccccchhHHHHHHHHHHHHHHhhhHHHHHHhhh
Q 013991          231 IAA-FWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWA  309 (432)
Q Consensus       231 ~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (432)
                      +.. +..++.++....   ..+...+..++.           ....++..+++++....+..+++.-...+...+-..|.
T Consensus       214 iPm~~~v~~~~~~~~~---~~~~l~~g~k~L-----------~~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg  279 (438)
T COG2270         214 LPMILNVHDAEKISSP---PPTALRNGFKEL-----------KSTFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFG  279 (438)
T ss_pred             hHHHhccccccccccc---chHHHHHHHHHH-----------HHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            444 344444332111   111111111111           12345566677777788888877766666666666676


Q ss_pred             cCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhChhHHHHHHHHHHHHHHHHhhHHHhhhhhHHHHHHHHH
Q 013991          310 NSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCA  389 (432)
Q Consensus       310 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (432)
                      ...     +|++..+...+....++.++++. ++.+++++|++.|+++.++.++..+..+...+....      ....+.
T Consensus       280 ~~~-----~gls~~~lll~g~~~~vvA~lg~-ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~------~~f~i~  347 (438)
T COG2270         280 AAD-----LGLSSTELLLIGIALSVVAALGA-IIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGE------LDFWIL  347 (438)
T ss_pred             HHH-----cCccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCceeehHHHHHHHHHHHHHHHcccc------HHHHHH
Confidence            655     89999999999999999999998 588999999999998888887766655444333222      235566


Q ss_pred             HHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHHHH
Q 013991          390 SVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWFV  427 (432)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~  427 (432)
                      ..+.+.+.++......++..+.+|+++.+...|.|...
T Consensus       348 gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyalt  385 (438)
T COG2270         348 GLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALT  385 (438)
T ss_pred             HHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhh
Confidence            67777888999999999999999999999999988653

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.68  E-value=1e-13  Score=125.38  Aligned_cols=315  Identities=16%  Similarity=0.085  Sum_probs=203.7

Q ss_pred             HHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccC-----ChHHHH-HHHHHHHHHHHHHhhh-----h--
Q 013991           67 MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYG-----RKPVII-MGTASVVIFNTLFGLS-----V--  133 (432)
Q Consensus        67 ~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G-----rr~~l~-~~~~~~~~~~~~~~~~-----~--  133 (432)
                      +..|++++..-      .+.+.+...+.. ...+.+|..+|+.+     ||..++ .|.+....+..+..++     .  
T Consensus         6 MIvEL~vpA~l------v~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~   78 (403)
T PF03209_consen    6 MIVELGVPAWL------VALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESG   78 (403)
T ss_pred             HHHHhccHHHH------HHHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccc
Confidence            45678887776      888888887775 46999999999999     876554 4566666655555432     2  


Q ss_pred             ------h-HH--HHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCcCCCc
Q 013991          134 ------N-FW--MAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNL  203 (432)
Q Consensus       134 ------~-~~--~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~  203 (432)
                            . .+  ...+...+.|+|.+...+. .++++|..|+|+|+++.++...+.-+|.+++..+.+.+.+.       
T Consensus        79 ~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~-------  151 (403)
T PF03209_consen   79 QQSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDP-------  151 (403)
T ss_pred             cccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccc-------
Confidence                  1 12  2344556778887777665 99999999999999999999999999999999999998872       


Q ss_pred             ccccccccCccchHHHHHHHHHHHHHHHHHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhccCCCCccccccchh
Q 013991          204 FSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWP  283 (432)
Q Consensus       204 ~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (432)
                      +.-...     .+ .+...++..+..-+...+-.|.+..+..+.++++                +......++++..+|+
T Consensus       152 ~s~~rL-----~~-v~~~~a~i~~~l~~ia~wg~E~r~~~~~~~~~~~----------------~~~f~~a~~~~~~~~~  209 (403)
T PF03209_consen  152 FSPERL-----IQ-VIQGVALIALLLNLIALWGQEPRRSRRAAAAERP----------------RPPFREAWRQVWASPQ  209 (403)
T ss_pred             cCHHHH-----HH-HHHHHHHHHHHHHHHHHHhcccCCcccccCCCCC----------------CccHHHHHHHHHhCCC
Confidence            111100     11 1111222222211222232343332222110000                0001123455666777


Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhChhHHHHHHHHH
Q 013991          284 LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVL  363 (432)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  363 (432)
                      .++.....++..+....-...+-.|.-+     -+|++..+...+....+.+..++-...+..+.+|.++++...+++..
T Consensus       210 a~~f~~fl~l~t~a~~~QD~iLEPygg~-----Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~  284 (403)
T PF03209_consen  210 ARRFFVFLFLGTLAFFMQDVILEPYGGE-----VFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLL  284 (403)
T ss_pred             hhHHHHHHHHHHHHHHhhHHHcCCchhH-----HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence            6666665555555544444443333333     38999999999999999998888654555556678888888888888


Q ss_pred             HHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHH
Q 013991          364 TIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFW  425 (432)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~  425 (432)
                      ..+++.++.......+   ...+....++.|++.+.......+.+.+..++++.|...|..-
T Consensus       285 ~~~~f~lii~a~~~~~---~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WG  343 (403)
T PF03209_consen  285 GALAFALIILAGPLGS---PWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWG  343 (403)
T ss_pred             HHHHHHHHHHHHhccc---chHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHH
Confidence            8888777665544332   2345566677788888887788888888888888887766553

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.66  E-value=1.6e-15  Score=146.66  Aligned_cols=310  Identities=16%  Similarity=0.201  Sum_probs=237.1

Q ss_pred             HHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHH
Q 013991           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (432)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~  124 (432)
                      .+.+..+...+....+...+..+.+.|+++..+      .|++.+.+-++..+...+..+...|.-|-+.+-+|++++++
T Consensus       101 ~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~------sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~l  174 (735)
T KOG3626|consen  101 LLSLAAFAQGLYVGYFNSVITTIERRFKISSSQ------SGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGL  174 (735)
T ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCc------ceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHH
Confidence            556666777777777778888999999999999      99999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhh-------------------------------------------------h--HH-HHHHHHHHHhhhccch
Q 013991          125 FNTLFGLSV-------------------------------------------------N--FW-MAVLTRFLLGSLNGLL  152 (432)
Q Consensus       125 ~~~~~~~~~-------------------------------------------------~--~~-~l~~~r~~~G~~~g~~  152 (432)
                      +++++++.+                                                 +  ++ .++++.++.|+|....
T Consensus       175 gsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi  254 (735)
T KOG3626|consen  175 GSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPI  254 (735)
T ss_pred             HHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCC
Confidence            999997420                                                 0  22 5677889999999999


Q ss_pred             hhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCcC-CCccc---ccccccCccchHHHHHHHHHHH
Q 013991          153 GPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY-PNLFS---SESLFGKFPYFLPCLCISLFAF  227 (432)
Q Consensus       153 ~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~-~~~~g---w~~~~~~~~~~~~~~~~~~~~~  227 (432)
                      .+. .+|+-|...+++-+..+|+......+|.++|-++++++...-.++ ....+   -...| -..||.-|++++.+.+
T Consensus       255 ~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrW-IGAWWlGFLi~g~~~~  333 (735)
T KOG3626|consen  255 FTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRW-IGAWWLGFLICGALLL  333 (735)
T ss_pred             ccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcch-hhHHHHHHHHHHHHHH
Confidence            887 999999999999999999999999999999999999988643322 11111   11222 4468999999999988


Q ss_pred             HHHHHHhhcccccCCCCCCCcchhhhHHHhhh----hhhhhhhhhccCCCCccccccchhHHHHHHHHHHHHHHhhhHHH
Q 013991          228 GVTIAAFWLPETLHRHNDDDDSCDVSYDALES----ASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSE  303 (432)
Q Consensus       228 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (432)
                      +..+.++++|+..++..++.+..+......++    .......+.++-+...+++++||.+...++...+......++.+
T Consensus       334 ~~a~p~f~fPk~lp~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~t  413 (735)
T KOG3626|consen  334 FSAVPLFFFPKELPKSQKRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYIT  413 (735)
T ss_pred             HHHHHHHhCcccCccccccchhhhhcccccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHH
Confidence            88888888887765543221111100000000    00011112233456678899999999999999999999999999


Q ss_pred             HHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhC--hhHHHHHHHHHHHH
Q 013991          304 IFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG--PIMVARIAGVLTIP  366 (432)
Q Consensus       304 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~  366 (432)
                      ++|-|++..     +|.++..+..+....++..+..+++++|++.+|+.  .|....+.++...+
T Consensus       414 FlPKyLE~Q-----fg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l  473 (735)
T KOG3626|consen  414 FLPKYLETQ-----FGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVL  473 (735)
T ss_pred             hhHHHHHHH-----cCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHH
Confidence            999999987     89999999999999998888777889999999864  44555544444433

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.61  E-value=2.8e-14  Score=138.94  Aligned_cols=174  Identities=15%  Similarity=0.241  Sum_probs=124.0

Q ss_pred             HHhhccccchhhhHHHHH-HHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHH-
Q 013991           51 LCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTL-  128 (432)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~-  128 (432)
                      +............+|.+. +++|.+..+      .++..+...++..++.++.|+++||+|||+.+.++.++..++.+. 
T Consensus       260 ~~~~~~~~~~~~~~p~~l~~~~g~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~  333 (490)
T PRK10642        260 IATNVTYYMLLTYMPSYLSHNLHYSEDH------GVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPA  333 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            333344445556677655 567888776      777888888999999999999999999999988887654433322 


Q ss_pred             --HhhhhhHHHHHHHHHHHhhhccchhh-HHhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCcCCCccc
Q 013991          129 --FGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFS  205 (432)
Q Consensus       129 --~~~~~~~~~l~~~r~~~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~g  205 (432)
                        ...+++...+++++++.|++.+.... ...++.|.+|++.|+++++.......++..++|.+.+++.+.         
T Consensus       334 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~---------  404 (490)
T PRK10642        334 FILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVES---------  404 (490)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence              22244577788889888886555444 477888999999999999975444556667899998888761         


Q ss_pred             ccccccCccchHHHHHHHHHHHHHHHHHhhcccccCCCCC
Q 013991          206 SESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHND  245 (432)
Q Consensus       206 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  245 (432)
                            ..+|+.++.+..+.+++.++..+++||++++..+
T Consensus       405 ------~~~~~~~~~~~~~~~~i~~~~~~~~pes~~~~~~  438 (490)
T PRK10642        405 ------TQNLMMPAYYLMVVAVIGLITGVTMKETANRPLK  438 (490)
T ss_pred             ------hCCchHHHHHHHHHHHHHHHHHHHhccccCCCCC
Confidence                  1234555555555666666666778999887543

>TIGR00889 2A0110 nucleoside transporter

Probab=99.61  E-value=1.1e-14  Score=138.55  Aligned_cols=174  Identities=12%  Similarity=0.117  Sum_probs=127.3

Q ss_pred             chhhhHHHHHHHhcCCcccc--chhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHhhhh---
Q 013991           59 SLFPFLYFMIKDFQIAKREE--DIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSV---  133 (432)
Q Consensus        59 ~~~~~~~~~~~~~~~s~~~~--~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~---  133 (432)
                      ......+.+.++.|.++...  ......+...++..++..++.++.|+++||+|||+++.++.++.+++..+.....   
T Consensus       226 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~  305 (418)
T TIGR00889       226 ITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEY  305 (418)
T ss_pred             HHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcch
Confidence            34455566666776554210  0001178999999999999999999999999999999999999988876666532   


Q ss_pred             -hHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHH-HHHHHHHHHHHHHHhhhcccCCcCCCcccccccc
Q 013991          134 -NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVS-TAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLF  210 (432)
Q Consensus       134 -~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~  210 (432)
                       +.+.+++.+++.|++.+...+. ..++.|.+|+++|++++++.+ ...++|.++||.++|.+.+..++.+         
T Consensus       306 ~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~---------  376 (418)
T TIGR00889       306 FGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYG---------  376 (418)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccc---------
Confidence             3466778899999988777665 889999999999999999997 6788999999999999998322100         


Q ss_pred             cCccchHHHHHHHHHHHH-HHHHHhhcccccCC
Q 013991          211 GKFPYFLPCLCISLFAFG-VTIAAFWLPETLHR  242 (432)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~  242 (432)
                       .++|+..+.+.++..++ .++..+++||+.+.
T Consensus       377 -~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~  408 (418)
T TIGR00889       377 -TFDWQTMWLFFAGYIAILAVLFMIFFKYSHNA  408 (418)
T ss_pred             -CCchHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence             02355555666655554 44555677776443

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.60  E-value=3.4e-14  Score=141.78  Aligned_cols=140  Identities=14%  Similarity=0.096  Sum_probs=116.6

Q ss_pred             hHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhccchhhH-Hhhhhhhc
Q 013991           85 GYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIF  163 (432)
Q Consensus        85 ~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~  163 (432)
                      .+...+..++.+++.++.|+++||+|||++++++.++.++++++.++.++...+++.+++.|++.+...+. .++++|++
T Consensus       598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~  677 (742)
T TIGR01299       598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELY  677 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            34456677888999999999999999999999999999999999999888888888888888865555554 89999999


Q ss_pred             ccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCcCCCcccccccccCccchHHHHHHHHHHHHHHHHHhhcccccC
Q 013991          164 REEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLH  241 (432)
Q Consensus       164 ~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  241 (432)
                      |+++|++++|+.+....+|.++||.+++.+.+                . ....++++.+++.++..+...++||+..
T Consensus       678 Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~----------------~-~~~~pf~i~a~~lll~~ll~~~LPET~~  738 (742)
T TIGR01299       678 PSDKRATAFGFLNALCKAAAVLGILIFGSFVG----------------I-TKAAPILFASAALACGGLLALKLPDTRG  738 (742)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------h-hhHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence            99999999999999999999999999998875                1 1345666676666666666667788654

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.59  E-value=7.5e-13  Score=117.87  Aligned_cols=264  Identities=16%  Similarity=0.109  Sum_probs=164.8

Q ss_pred             hccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHhhhh
Q 013991           54 ALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSV  133 (432)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~  133 (432)
                      ........|....+-+++|.++.+      ++.+.........+..++.|.++||+|||+.-++-+++..++++.. ..+
T Consensus        47 ~~aDWLQGpY~Y~LY~~yg~~~~q------Ia~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k-~~~  119 (354)
T PF05631_consen   47 MAADWLQGPYLYALYESYGFSEHQ------IAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTK-HSS  119 (354)
T ss_pred             HHHHHhhcchhHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH-hcc
Confidence            333444567666566789999999      9999999999999999999999999999999999999999998654 468


Q ss_pred             hHHHHHHHHHHHhhhccchhhH-H-hhhhhhc----ccchhhhhhhhHH-HHHHHHHHHHHHHHhhhcccCCcCCCcccc
Q 013991          134 NFWMAVLTRFLLGSLNGLLGPI-K-AYACEIF----REEHQALGLSTVS-TAWGIGLIIGPALGGFLAQPAEKYPNLFSS  206 (432)
Q Consensus       134 ~~~~l~~~r~~~G~~~g~~~~~-~-~~i~~~~----~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw  206 (432)
                      +++.++++|++.|++......+ - -++.|.-    |++..+..++... ...++-.+.+.+++-++.+.       .  
T Consensus       120 ~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~-------~--  190 (354)
T PF05631_consen  120 NYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADW-------F--  190 (354)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHH-------h--
Confidence            8999999999999998887665 4 4566663    2333333333333 22334445555555555551       1  


Q ss_pred             cccccCccchHHHHHHHHHHHHHHHHH-hhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhccCCCCccccccchhHH
Q 013991          207 ESLFGKFPYFLPCLCISLFAFGVTIAA-FWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLM  285 (432)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (432)
                           ..+...||.....+.++..+.+ ..-+|+.....++.+..+..                  ....+.+.++|+++
T Consensus       191 -----~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~~~~~~~~~~~~------------------~~a~~~i~~d~ril  247 (354)
T PF05631_consen  191 -----GFGPVAPFDAAIVLLAVAAVLILKTWPENYGDTSSSSSLSGSF------------------REAWRAILSDPRIL  247 (354)
T ss_pred             -----CCCCcchHHHHHHHHHHHHHHHHhcccccCCCcccccchHHHH------------------HHHHHHHHcCchhH
Confidence                 2233566777766666544443 34456544322111111100                  11345567788888


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhChhHHHHHHHHH
Q 013991          286 SSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVL  363 (432)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  363 (432)
                      .+.++..++-.....+...     ..|.... .+ ...-.|++++.+-+..++|+.+....+.++......+.....+
T Consensus       248 ~LG~~qslFE~smy~FVfl-----WtPaL~~-~~-~~~P~GlIFssFM~a~MlGS~lf~~l~s~~~~~e~~l~~v~~~  318 (354)
T PF05631_consen  248 LLGLIQSLFEGSMYLFVFL-----WTPALDP-DD-EELPLGLIFSSFMVAMMLGSSLFSRLLSKSLRPESLLRYVFAV  318 (354)
T ss_pred             HHHHHHHHHHHHHHHheee-----eeceecC-CC-CCCCchHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            8777776665554444322     2332221 11 2334789999988888888853334455554444444443333

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.58  E-value=9e-14  Score=131.64  Aligned_cols=156  Identities=15%  Similarity=0.204  Sum_probs=122.1

Q ss_pred             hhhhHHH-HHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 013991           60 LFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMA  138 (432)
Q Consensus        60 ~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l  138 (432)
                      .....|. +.+++|.++.+      .+++.+...++..++.++.|+++||+|||+.+..+.+...+.......+++.+.+
T Consensus       235 ~~~~~p~~l~~~~~~~~~~------~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (393)
T PRK15011        235 YIINMPLFIINELHLPEKL------AGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAIL  308 (393)
T ss_pred             HHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            4445664 45678988887      8888888778888899999999999999998887776666655555567788888


Q ss_pred             HHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCcCCCcccccccccCccchH
Q 013991          139 VLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFL  217 (432)
Q Consensus       139 ~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~  217 (432)
                      ++.+++.+++.|...+. ..+..|..|+ +|++++++++....+|..+||.++|.+.+                .++|+.
T Consensus       309 l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~----------------~~g~~~  371 (393)
T PRK15011        309 LGLQLLNAIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAE----------------IWNYHA  371 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHH----------------HhhhHH
Confidence            88888888876665554 6778888875 69999999999999999999999999988                445566


Q ss_pred             HHHHHHHHHHHHHHHHhhccc
Q 013991          218 PCLCISLFAFGVTIAAFWLPE  238 (432)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~e  238 (432)
                      ++.+.+++.++.++..+++||
T Consensus       372 ~~~~~~~~~~~~~~~~~~~~~  392 (393)
T PRK15011        372 VFWFALVMIIATLFCLLRIKD  392 (393)
T ss_pred             HHHHHHHHHHHHHHHHHhhcC
Confidence            667777777776666666665

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.57  E-value=2.5e-14  Score=114.31  Aligned_cols=136  Identities=32%  Similarity=0.577  Sum_probs=113.0

Q ss_pred             HHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhccchhhH-Hhhhhhhccc
Q 013991           87 VGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFRE  165 (432)
Q Consensus        87 ~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~  165 (432)
                      ..+.+.++..++.++.|++.||+|||+.+..+.....++.+.....++++.+.+.+++.|++.+...+. ..++.|..|+
T Consensus         3 ~~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~   82 (141)
T TIGR00880         3 LLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPP   82 (141)
T ss_pred             EEEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCh
Confidence            345667888999999999999999999999999999999998888899999999999999988877775 8999999999


Q ss_pred             chhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCcCCCcccccccccCccchHHHHHHHHHHHHHHHH-Hhhccc
Q 013991          166 EHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPE  238 (432)
Q Consensus       166 ~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e  238 (432)
                      ++|++..++.+....+|..++|.+++.+.+                ..+|+..+.+.+...++..+. .+..||
T Consensus        83 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        83 EERGVALGLMSAGIALGPLLGPPLGGVLAQ----------------FLGWRAPFLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             hhhhHHHHHHHHhHHHHHHHhHHhHHHHhc----------------ccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            999999999999999999999999999987                334545556665555544333 334444

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.56  E-value=1.2e-13  Score=131.53  Aligned_cols=135  Identities=21%  Similarity=0.281  Sum_probs=114.9

Q ss_pred             ccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHhhhhh
Q 013991           55 LPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVN  134 (432)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~  134 (432)
                      ..........|.+.++.|.+..+      .+...+...++..++.++.|+++||+|||+.+..+.+...++.++....++
T Consensus       234 ~~~~~~~~~~p~~~~~~g~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~  307 (406)
T PRK11551        234 IVLYFLLNWLPSLLVGQGLSRSQ------AGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPS  307 (406)
T ss_pred             HHHHHHHHHHHHHHHhCCCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            33334455678888889999888      999999999999999999999999999999998877777777777777777


Q ss_pred             HHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcc
Q 013991          135 FWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (432)
Q Consensus       135 ~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (432)
                      .+.+.+..++.|++.+...+. .+++.|.+|+++|++.+++.+....+|..+||.++|.+.+
T Consensus       308 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~  369 (406)
T PRK11551        308 FAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLA  369 (406)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhc
Confidence            777777778888876555554 8899999999999999999999999999999999999987

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.56  E-value=5.1e-14  Score=132.52  Aligned_cols=144  Identities=13%  Similarity=0.034  Sum_probs=115.4

Q ss_pred             HHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHH
Q 013991           46 IWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF  125 (432)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~  125 (432)
                      .....+.............+.+.++++.++.+      .+.+.+.+.++..++.++.|++.||+|||+.+.++.++..++
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~  283 (377)
T TIGR00890       210 LYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGF------LVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVG  283 (377)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence            33333333333333444556677888888877      899999999999999999999999999999999999888888


Q ss_pred             HHHHhhhhhH--HHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcc
Q 013991          126 NTLFGLSVNF--WMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (432)
Q Consensus       126 ~~~~~~~~~~--~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (432)
                      .++..+.++.  ..++...++.|++.+...+. .+++.|.+|+++|++..++.+....+|..++|.+.+.+.+
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~  356 (377)
T TIGR00890       284 MAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALT  356 (377)
T ss_pred             HHHHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8877766543  33445667788876666554 8889999999999999999999999999999999999987

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.56  E-value=2.3e-14  Score=137.04  Aligned_cols=139  Identities=19%  Similarity=0.144  Sum_probs=113.9

Q ss_pred             hhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhccchhhH-Hhhhhhh
Q 013991           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEI  162 (432)
Q Consensus        84 ~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~  162 (432)
                      .|++.++..++..++.+++|++.||+|||+.+.++.++.+++.++.+++++.+.+++.+++.|++.+...+. ..++.|.
T Consensus       264 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~  343 (420)
T PRK09528        264 FGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLN  343 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999999999999999999888888999999999999999887766554 7899999


Q ss_pred             cccchhhhhhhh-HHHHHHHHHHHHHHHHhhhcccCCcCCCcccccccccCccchHHHHHHHHHHHHHH-HHHhhccc
Q 013991          163 FREEHQALGLST-VSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPE  238 (432)
Q Consensus       163 ~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e  238 (432)
                      +|++.|+...+. ++....+|.+++|.+.|++.+                ..+|+.++...++..++.. +..+.+++
T Consensus       344 ~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~----------------~~G~~~~f~~~~~~~~i~~~~~~~~~~~  405 (420)
T PRK09528        344 FDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYD----------------SIGFQGTYLILGGIVLLFTLISVFTLSG  405 (420)
T ss_pred             cCccceeeeeeehHHHHHHHHHHHHHHHHHHHHH----------------hhCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999887665 677888999999999999998                3345555566666555433 33344444

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.55  E-value=1.7e-13  Score=130.28  Aligned_cols=159  Identities=19%  Similarity=0.169  Sum_probs=125.9

Q ss_pred             cchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHhhhhhHHH
Q 013991           58 SSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWM  137 (432)
Q Consensus        58 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~  137 (432)
                      .......+.+.++.|.  ++      .++..+.+.++..++.++.|++.||+|||+.+..+..+..++.++....++.+.
T Consensus       233 ~~~~~~~~~~~~~~~~--~~------~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (399)
T PRK05122        233 GTIATFITLYYAARGW--DG------AALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWM  304 (399)
T ss_pred             HHHHHHHHHHHHHccc--cc------chHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence            3344555655556555  33      566778888899999999999999999999999998888888888888888888


Q ss_pred             HHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCcCCCcccccccccCccch
Q 013991          138 AVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYF  216 (432)
Q Consensus       138 l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~  216 (432)
                      +++.+++.|++.+...+. ...+.|..|+++|+++.++++....+|..++|.+.+.+.+                .++|+
T Consensus       305 ~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~----------------~~g~~  368 (399)
T PRK05122        305 ALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVAS----------------WFGYP  368 (399)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HcCHH
Confidence            888899999988777665 6778899999999999999999999999999999999987                44455


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccc
Q 013991          217 LPCLCISLFAFGVTIAAFWLPETL  240 (432)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~e~~  240 (432)
                      ..+.+.+++.++.++....+++++
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~  392 (399)
T PRK05122        369 SIFLAAALAALLGLALTWLLYRRA  392 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccc
Confidence            555777666666555555555543

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.54  E-value=1.8e-13  Score=129.11  Aligned_cols=149  Identities=12%  Similarity=0.057  Sum_probs=129.9

Q ss_pred             chhHHHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHH
Q 013991           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (432)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~  119 (432)
                      .++++...+..++............|.+.+++|.++.+      .|.+.+...++..++.++.+++.||+|+|+.+.++.
T Consensus       204 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~------~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~  277 (382)
T TIGR00902       204 NPMNLRFLAAVCLIQGAHAAYYGFSAIYWQAAGISASA------TGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISA  277 (382)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHhH------HHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHH
Confidence            34455555555555566666667778777889999998      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHH-HHHHHHHHHHHHHHhhhcc
Q 013991          120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVS-TAWGIGLIIGPALGGFLAQ  195 (432)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~l~~  195 (432)
                      ++..+..++++++++.+.+++.+++.|+..+...+. ..++.+. |+++|++..++++ ...++|.++||.++|++.+
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~  354 (382)
T TIGR00902       278 IACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYP  354 (382)
T ss_pred             HHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999998888776 8899988 9999999999986 5788999999999999998

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.52  E-value=5.5e-13  Score=125.55  Aligned_cols=154  Identities=15%  Similarity=0.293  Sum_probs=120.9

Q ss_pred             hhHH-HHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 013991           62 PFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVL  140 (432)
Q Consensus        62 ~~~~-~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~  140 (432)
                      ...| ++.+++|.++.+      .+++.+.......++.++.|++.||+|||+++.++.++..+........++.+.+++
T Consensus       220 ~~~~~~~~~~~g~~~~~------~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (375)
T TIGR00899       220 INMPLLIIHELGLPDKL------AGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLM  293 (375)
T ss_pred             hhhHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445 445778998888      888888877777888999999999999999998887777666666666778888888


Q ss_pred             HHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCcCCCcccccccccCccchHHH
Q 013991          141 TRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPC  219 (432)
Q Consensus       141 ~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~  219 (432)
                      .+++.|++.+...+. ..++.|..|+ +|++++++.+....+|..++|.+++.+.+                ..+|+..+
T Consensus       294 ~~~~~g~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~----------------~~g~~~~~  356 (375)
T TIGR00899       294 LQLLNAIFIGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAE----------------RWSYHAVY  356 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH----------------hccchhHH
Confidence            899999987776665 7888898875 56799999999999999999999999988                34455555


Q ss_pred             HHHHHHHHHHHHHHhhccc
Q 013991          220 LCISLFAFGVTIAAFWLPE  238 (432)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~e  238 (432)
                      ...++..++..+...+++|
T Consensus       357 ~~~~~~~~~~~~~~~~~~~  375 (375)
T TIGR00899       357 WFAIVMLIVALFCLLLIKD  375 (375)
T ss_pred             HHHHHHHHHHHHHHheecC
Confidence            7666666665555555543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.52  E-value=5.3e-13  Score=124.22  Aligned_cols=163  Identities=22%  Similarity=0.316  Sum_probs=137.1

Q ss_pred             HHHhhccccchhhhHHHHHHHh-cCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChH-HHHHHHHHHHHHHH
Q 013991           50 VLCTALPISSLFPFLYFMIKDF-QIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKP-VIIMGTASVVIFNT  127 (432)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~-~l~~~~~~~~~~~~  127 (432)
                      .+.............|.+.++. |.++.+      .++..+...++..++.++.|++.||+|||+ .+..+..+..++.+
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  257 (352)
T cd06174         184 FFLLSFGYYGLLTYLPLYLQEVLGLSAAE------AGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLL  257 (352)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            3344444555666677666654 888888      999999999999999999999999999999 99999999999999


Q ss_pred             HHhhhhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCcCCCcccc
Q 013991          128 LFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSS  206 (432)
Q Consensus       128 ~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw  206 (432)
                      .....++.+.+.+..++.|++.+...+. .+++.|..|+++|++.+++.+....+|..++|.+.+.+.+           
T Consensus       258 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~-----------  326 (352)
T cd06174         258 LLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLD-----------  326 (352)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------
Confidence            9999988999999999999998887776 9999999999999999999999999999999999999987           


Q ss_pred             cccccCccchHHHHHHHHHHHHHHHHHh
Q 013991          207 ESLFGKFPYFLPCLCISLFAFGVTIAAF  234 (432)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (432)
                           ..+|+..+.+.+++.++..+...
T Consensus       327 -----~~~~~~~~~~~~~~~~i~~i~~~  349 (352)
T cd06174         327 -----TGGYGGVFLILAALALLAALLLL  349 (352)
T ss_pred             -----ccCcchHHHHHHHHHHHHHHHhe
Confidence                 44455555777766666554443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.50  E-value=4e-13  Score=128.39  Aligned_cols=162  Identities=17%  Similarity=0.119  Sum_probs=129.7

Q ss_pred             hhhhHHHHHHH-hcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 013991           60 LFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMA  138 (432)
Q Consensus        60 ~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l  138 (432)
                      .....|.+.++ +|.+..+      .|++.+...++..++.++.+++.||.++++.+..+.++.+++.++..+.++.+.+
T Consensus       242 ~~~~~p~~~~~~~g~~~~~------~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  315 (417)
T PRK10489        242 VRVLYPALADEVWQMGAAQ------IGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILA  315 (417)
T ss_pred             HHHhhHHHHHhccCCChhH------hHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHH
Confidence            44556766666 8998888      9999999999999999999999999888888888888888888888888888888


Q ss_pred             HHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCcCCCcccccccccCccchH
Q 013991          139 VLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFL  217 (432)
Q Consensus       139 ~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~  217 (432)
                      .++.++.|++.+...+. .+++.|..|++.|++++++++....+|..+||.+.|.+.+                ..+.+.
T Consensus       316 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~----------------~~g~~~  379 (417)
T PRK10489        316 VLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGA----------------MMTPVA  379 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHH----------------Hhchhh
Confidence            88888899887776665 7899999999999999999999999999999999999998                334444


Q ss_pred             HHHHHHHHHHH-HHHHHhhcccccCCC
Q 013991          218 PCLCISLFAFG-VTIAAFWLPETLHRH  243 (432)
Q Consensus       218 ~~~~~~~~~~~-~~~~~~~~~e~~~~~  243 (432)
                      .+...+...++ ..+....+||.++.+
T Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (417)
T PRK10489        380 SASASGFGLLIIGVLLLLVLGELRRFR  406 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccccc
Confidence            44544444333 444555667655443

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.50  E-value=4.9e-13  Score=127.48  Aligned_cols=159  Identities=18%  Similarity=0.223  Sum_probs=123.8

Q ss_pred             ccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHhhhhhHH
Q 013991           57 ISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFW  136 (432)
Q Consensus        57 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~  136 (432)
                      .....+..+.+.++.+.+..+  .....+.+.++..++..++.+..|+++||+|||+.+..+..+..++.+.....++.+
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (408)
T PRK09874        235 TGSIAPILTLYVRELAGNVSN--IAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPL  312 (408)
T ss_pred             HHHHHHHHHHHHHHHhccchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHH
Confidence            344456666666655433322  112246666777888889999999999999999999999888888887777778888


Q ss_pred             HHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCcCCCcccccccccCccc
Q 013991          137 MAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPY  215 (432)
Q Consensus       137 ~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~  215 (432)
                      .+++.+++.|++.+...+. .+.+.+..|+++|++.+++.+....+|..+||.++|.+.+                .++|
T Consensus       313 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~----------------~~g~  376 (408)
T PRK09874        313 QLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISA----------------NYGF  376 (408)
T ss_pred             HHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHh----------------hcch
Confidence            8889999999988887775 8888899999999999999999999999999999999988                4445


Q ss_pred             hHHHHHHHHHHHHHHHHH
Q 013991          216 FLPCLCISLFAFGVTIAA  233 (432)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~  233 (432)
                      +..+.+.+++.++..+..
T Consensus       377 ~~~f~~~~~~~l~~~~~~  394 (408)
T PRK09874        377 RAVFLVTAGVVLFNAVYS  394 (408)
T ss_pred             hHHHHHHHHHHHHHHHHH
Confidence            555577776666544443

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.49  E-value=2.3e-13  Score=131.17  Aligned_cols=149  Identities=17%  Similarity=0.147  Sum_probs=118.1

Q ss_pred             hhHHHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhcc--CChHHHHH-
Q 013991           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY--GRKPVIIM-  117 (432)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~--Grr~~l~~-  117 (432)
                      +.++......++..+........+|.+.+++|.+..+      .+++.+...++..++.++.|+++||.  ++|+...+ 
T Consensus       241 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~  314 (455)
T TIGR00892       241 RGFLVYLSGNVIMFLGFFAPIIFLVPYAKDKGVDEYE------AAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFS  314 (455)
T ss_pred             chHHHHHHHHHHHHHHccchHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHH
Confidence            3444444455555555555666777777888999888      99999999999999999999999984  34443333 


Q ss_pred             -HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcc
Q 013991          118 -GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (432)
Q Consensus       118 -~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (432)
                       +.++.+++.+++...++++.+++.+++.|++.+...+. .+++.|.+|++++++.+++++....+|..+||.++|.+.+
T Consensus       315 ~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~  394 (455)
T TIGR00892       315 FALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVD  394 (455)
T ss_pred             HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeeh
Confidence             33444455556667788899999999999988887775 8899999999999999999999999999999999999987

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.49  E-value=2.6e-12  Score=121.58  Aligned_cols=179  Identities=12%  Similarity=0.084  Sum_probs=126.0

Q ss_pred             hHHHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHH
Q 013991           42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (432)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~  121 (432)
                      ..+.+.+..++............|.+.+++|.+..+      .+...+.+.++..++.++.|++.||+|||+.+.++..+
T Consensus       206 ~~~~l~~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~------ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l  279 (393)
T PRK09705        206 RAWTLGVYFGLINGGYASLIAWLPAFYIEIGASAQY------SGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVL  279 (393)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhh------hhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHH
Confidence            344344444444445555666777777788999888      99999999999999999999999999999999888877


Q ss_pred             HHHHHHHHhh-hhhHHHHHHHHHHHhhhccchhhH-Hhhhhhhcc-cchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCC
Q 013991          122 VVIFNTLFGL-SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFR-EEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE  198 (432)
Q Consensus       122 ~~~~~~~~~~-~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~  198 (432)
                      ..++..+... .++...+.  -++.|++.+...+. .....+..+ +++|++..+..+....++..++|.+.|++.+.. 
T Consensus       280 ~~~~~~~~~~~~~~~~~~~--~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~-  356 (393)
T PRK09705        280 QLVGFCGFIWLPLQLPVLW--AMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSIS-  356 (393)
T ss_pred             HHHHHHHHHHccchHHHHH--HHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence            7777665543 22222222  24567776666564 556666664 678999999999999999999999999999822 


Q ss_pred             cCCCcccccccccCccchHHHHHHHHHHHHHHHH-HhhcccccCCC
Q 013991          199 KYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPETLHRH  243 (432)
Q Consensus       199 ~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~  243 (432)
                            |        ++...+.+.++..++.+.. ..+.||+++++
T Consensus       357 ------g--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (393)
T PRK09705        357 ------G--------NYLMDWAFHALCVVGLMIITLRFAPARFPQL  388 (393)
T ss_pred             ------C--------CchHHHHHHHHHHHHHHHHHHHhccccccch
Confidence                  1        2444445555555544333 45567765544

>PRK12382 putative transporter; Provisional

Probab=99.48  E-value=1.1e-12  Score=124.29  Aligned_cols=154  Identities=21%  Similarity=0.209  Sum_probs=122.5

Q ss_pred             cccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHhhhhhH
Q 013991           56 PISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF  135 (432)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~  135 (432)
                      .........+.+.++.+.+  +      .++..+.+.++..+++++.|++.||+|+|+.+..+..+..++.++..+.++.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~--~------~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~  302 (392)
T PRK12382        231 GFAVIGTFVSLYFASKGWA--M------AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTA  302 (392)
T ss_pred             HHhHHHHHHHHHHHhcCCc--h------hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccH
Confidence            3334445556666666654  3      5566677888889999999999999999999999999888888888888888


Q ss_pred             HHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCcCCCcccccccccCcc
Q 013991          136 WMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFP  214 (432)
Q Consensus       136 ~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~  214 (432)
                      +.+++..++.|++.+...+. .+.+.|.+|+++|+++.++.+....+|..+||.+.+.+.+                ..+
T Consensus       303 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~----------------~~g  366 (392)
T PRK12382        303 WVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLAT----------------SFG  366 (392)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HhC
Confidence            88888899999988777665 7888999999999999999999999999999999999998                334


Q ss_pred             chHHHHHHHHHHHHHHHHH
Q 013991          215 YFLPCLCISLFAFGVTIAA  233 (432)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~  233 (432)
                      |+..+.+.+++.++..+..
T Consensus       367 ~~~~~~~~~~~~~~~~~~~  385 (392)
T PRK12382        367 YPSVFLAGAISAVLGIIVT  385 (392)
T ss_pred             chHHHHHHHHHHHHHHHHH
Confidence            4555566666665544443

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.47  E-value=1.8e-12  Score=122.30  Aligned_cols=129  Identities=20%  Similarity=0.295  Sum_probs=104.4

Q ss_pred             cchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHhhhhhHHH
Q 013991           58 SSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWM  137 (432)
Q Consensus        58 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~  137 (432)
                      ......+|.+.++.|.+..+      .++..+...++..+++++.|++.||+|+|+++..+..+..++.+...  + ...
T Consensus       217 ~~~~~~lp~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~  287 (381)
T PRK03633        217 GSLYGLMPLYLNHQGMSDAS------IGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAA  287 (381)
T ss_pred             HHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHH
Confidence            33445678777888888888      89999999999999999999999999999999888877777665443  2 233


Q ss_pred             HHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcc
Q 013991          138 AVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (432)
Q Consensus       138 l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (432)
                      .....++.|++.+...|. .+.+.|..|+++++...+..+...++|..+||.++|++.+
T Consensus       288 ~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~  346 (381)
T PRK03633        288 MAPALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQ  346 (381)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445667778765555665 8888999999888888888888999999999999999998

>TIGR00897 2A0118 polyol permease family

Probab=99.46  E-value=1.5e-12  Score=123.68  Aligned_cols=172  Identities=15%  Similarity=0.235  Sum_probs=123.3

Q ss_pred             hHHHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHH-HHHH
Q 013991           42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII-MGTA  120 (432)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~-~~~~  120 (432)
                      .++...+..++............|.+.+++|.+..+      .+.+.+...++..++.++.|+++||+|||+.+. .+.+
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~------~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l  296 (402)
T TIGR00897       223 NVLLGGMVRIINTIGLFGFAVFLPMFVAELGFSTSE------WLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGV  296 (402)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhH------HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence            344444444444455555566778888889999888      889889999999999999999999999988764 3333


Q ss_pred             HHHHHHHHHhh-----hhhHHHHHHHHHHHhhhccchhhHHhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcc
Q 013991          121 SVVIFNTLFGL-----SVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (432)
Q Consensus       121 ~~~~~~~~~~~-----~~~~~~l~~~r~~~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (432)
                      ...++.+....     .++.+.+++..++.|++.+...+....+.|.. +++|++++|+.+....+|..++|.+++.+.+
T Consensus       297 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~  375 (402)
T TIGR00897       297 GCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGYVPLAAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIG  375 (402)
T ss_pred             HHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33333333322     23566677788888887666555555666754 5689999999999999999999999999998


Q ss_pred             cCCcCCCcccccccccCccchHHHHHHHHHHHHHHHHHhhc
Q 013991          196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL  236 (432)
Q Consensus       196 ~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (432)
                                      .+++..++.+.+++.++..+...++
T Consensus       376 ----------------~~g~~~~~~~~a~~~~i~~~~~~~~  400 (402)
T TIGR00897       376 ----------------FFGAIGVVWIFAALYVVSAFLTAFI  400 (402)
T ss_pred             ----------------hcchHHHHHHHHHHHHHHHHHHHHh
Confidence                            4455555566666665554444443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK03699 putative transporter; Provisional

Probab=99.45  E-value=1.6e-12  Score=123.24  Aligned_cols=147  Identities=11%  Similarity=0.109  Sum_probs=115.1

Q ss_pred             hHHHHHHHHHHhhccccchhhhHHHHH-HHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHH
Q 013991           42 ELFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (432)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~  120 (432)
                      .++...+..++............|.+. +++|.+..+      .+.+.+.+.++..++.++.|+++||+|||+.+.....
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~------~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~  279 (394)
T PRK03699        206 GVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLED------AGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAG  279 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH------hhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHH
Confidence            344444444544444455566777666 568999988      9999999999999999999999999999999988887


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcc
Q 013991          121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (432)
Q Consensus       121 ~~~~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (432)
                      +..+...+....++.+.+.+..++.|++.+...+. .++..|..| +++++..+.......+|..++|.+.|.+.+
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~  354 (394)
T PRK03699        280 LALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVA  354 (394)
T ss_pred             HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            77777777767777777777777888876655554 667777665 456778888888899999999999999998

>PRK03545 putative arabinose transporter; Provisional

Probab=99.45  E-value=3.9e-12  Score=120.41  Aligned_cols=145  Identities=13%  Similarity=0.128  Sum_probs=110.8

Q ss_pred             HHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHH-HHHhhhhhHHHHHHHHH
Q 013991           65 YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFN-TLFGLSVNFWMAVLTRF  143 (432)
Q Consensus        65 ~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~~l~~~r~  143 (432)
                      |.+.+++|.+..+      .+++.+...++..+++++.|+++||+|||+... +..+..++. .+....++.+.+++..+
T Consensus       230 ~~l~~~~g~s~~~------~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~  302 (390)
T PRK03545        230 PFVQQVAGLSENF------ATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSI  302 (390)
T ss_pred             HHHHHhcCCCccH------HHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence            3455567888888      999999999999999999999999999887544 444344433 33445677788888888


Q ss_pred             HHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCcCCCcccccccccCccchHHHHHH
Q 013991          144 LLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCI  222 (432)
Q Consensus       144 ~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~  222 (432)
                      +.|++.+...+. ...+.|..| ++|++++++.+....+|..+||.++|.+.+                .++++..+...
T Consensus       303 l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~----------------~~g~~~~~~~~  365 (390)
T PRK03545        303 FWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSL----------------HLGLSSIGYVG  365 (390)
T ss_pred             HHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------ccChhHHHHHH
Confidence            999987666554 777778766 688999999999999999999999999998                44555555666


Q ss_pred             HHHHHHHHHHH
Q 013991          223 SLFAFGVTIAA  233 (432)
Q Consensus       223 ~~~~~~~~~~~  233 (432)
                      +++.++.++..
T Consensus       366 ~~~~~~~~~~~  376 (390)
T PRK03545        366 AALALAALVWS  376 (390)
T ss_pred             HHHHHHHHHHH
Confidence            66666544443

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.45  E-value=3.5e-12  Score=120.73  Aligned_cols=148  Identities=14%  Similarity=0.112  Sum_probs=105.5

Q ss_pred             hhHHHHHHHHHHhhccccchhhhHHHHH-HHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChH--HHH-
Q 013991           41 TELFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKP--VII-  116 (432)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~--~l~-  116 (432)
                      +.++...+..++............|.+. +++|.+..+      .+++.+...++..++.++.|+++||+|||+  ... 
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  288 (399)
T TIGR00893       215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILE------AGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFA  288 (399)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHH------hhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHH
Confidence            4455555666666666666677777554 568888888      899999999999999999999999999996  111 


Q ss_pred             -----HHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHH
Q 013991          117 -----MGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG  190 (432)
Q Consensus       117 -----~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~  190 (432)
                           .+.++..+........++.+.......+.+.+.+ ..+. .+++.|.+|+++|++++++.+....+|..++|.+.
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~  367 (399)
T TIGR00893       289 RKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVI  367 (399)
T ss_pred             HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHh
Confidence                 1111111111112222344444444444444555 4554 99999999999999999999999999999999999


Q ss_pred             hhhcc
Q 013991          191 GFLAQ  195 (432)
Q Consensus       191 ~~l~~  195 (432)
                      +.+.+
T Consensus       368 g~l~~  372 (399)
T TIGR00893       368 GAIAA  372 (399)
T ss_pred             hhhcc
Confidence            99988

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.43  E-value=3.4e-12  Score=124.98  Aligned_cols=131  Identities=20%  Similarity=0.245  Sum_probs=103.7

Q ss_pred             chhhhHHHHH-HHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHhhh--hhH
Q 013991           59 SLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS--VNF  135 (432)
Q Consensus        59 ~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~  135 (432)
                      .....+|.+. +++|.+..+      .+++.+...++..++.++.|+++||+|||+++..+.++..+..++....  .+.
T Consensus       293 ~~~~~lp~~l~~~~g~~~~~------~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (496)
T PRK03893        293 PIQALLPTYLKTDLGYDPHT------VANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANV  366 (496)
T ss_pred             hHHHHHHHHHHhhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHH
Confidence            3456677666 588999988      9999999999999999999999999999999888877666655444332  344


Q ss_pred             HHHHHHHHHHhh-hccchhhHHhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcc
Q 013991          136 WMAVLTRFLLGS-LNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (432)
Q Consensus       136 ~~l~~~r~~~G~-~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (432)
                      +.+.+..++.+. +.+......+++.|.+|+++|++.+++.+....+|..+||.++|.+.+
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~  427 (496)
T PRK03893        367 WVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQ  427 (496)
T ss_pred             HHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhc
Confidence            444445555444 334333347889999999999999999999999999999999999998

>PRK09952 shikimate transporter; Provisional

Probab=99.43  E-value=6.2e-12  Score=120.73  Aligned_cols=168  Identities=15%  Similarity=0.177  Sum_probs=113.9

Q ss_pred             HhhccccchhhhHHHH-HHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHh
Q 013991           52 CTALPISSLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFG  130 (432)
Q Consensus        52 ~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~  130 (432)
                      .............|.+ .+++|.+...      ...+.....+...++.++.|+++||+|||+.+..+.++..++.+.+.
T Consensus       261 ~~~~~~~~~~~~~~~y~~~~~g~s~~~------~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~  334 (438)
T PRK09952        261 CELLTMYIVTAFALNYSTQNLGLPREL------FLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFF  334 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence            3333344445556644 5668887765      55555556667788889999999999999998888776655544332


Q ss_pred             h---h-hhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHH-HHHHHHHHHHHHHHhhhcccCCcCCCcc
Q 013991          131 L---S-VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVS-TAWGIGLIIGPALGGFLAQPAEKYPNLF  204 (432)
Q Consensus       131 ~---~-~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~l~~~~~~~~~~~  204 (432)
                      .   . ++.+.+++..++.+++.+...+. .++++|.+|++.|+.+.++.. .+..+|..++|.+.+++.+..       
T Consensus       335 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~-------  407 (438)
T PRK09952        335 MALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYF-------  407 (438)
T ss_pred             HHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc-------
Confidence            2   1 23444445556667776665554 889999999999998888864 445589999999999998621       


Q ss_pred             cccccccCccchHHHHHHHHHHHHHHHHHhhcccc
Q 013991          205 SSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPET  239 (432)
Q Consensus       205 gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  239 (432)
                             ..+|..++...++..++..+..+.++|+
T Consensus       408 -------~~~~~~~~~~~~~~~~i~~v~~~~~~~~  435 (438)
T PRK09952        408 -------GGSWHSVAIYLLAGCLISAMTALLMKDN  435 (438)
T ss_pred             -------CCCchHHHHHHHHHHHHHHHHHHHcccc
Confidence                   1235556666666666666666666663

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.42  E-value=5.1e-12  Score=122.93  Aligned_cols=174  Identities=17%  Similarity=0.185  Sum_probs=123.9

Q ss_pred             HHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHH
Q 013991           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (432)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~  124 (432)
                      ...+..+.............|.+.+++|.+..+      .++......++..++.++.|+++||+|||+.+.++.++..+
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~  361 (481)
T TIGR00879       288 GVVLQWFQQFTGINAIMYYSPTIFENAGVSTDH------AFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAI  361 (481)
T ss_pred             HHHHHHHHHHhCCeehHHHHHHHHHHcCCCchH------HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            334444444445555666778888899998877      88899999999999999999999999999999998888877


Q ss_pred             HHHHHhhh-----h------hHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhh
Q 013991          125 FNTLFGLS-----V------NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGF  192 (432)
Q Consensus       125 ~~~~~~~~-----~------~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  192 (432)
                      +.++.++.     +      +...+....++.+.......+. ..++.|.+|+++|++++++.+....+|.+++|.+.+.
T Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~  441 (481)
T TIGR00879       362 CLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPT  441 (481)
T ss_pred             HHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77766521     1      2223333333333322223344 7788999999999999999999999999999999999


Q ss_pred             hcccCCcCCCcccccccccCccchHHHHHHHHHHHHHHHH-Hhhccccc
Q 013991          193 LAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPETL  240 (432)
Q Consensus       193 l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~  240 (432)
                      +.+       ..||+..|         .+.++++++..+. .++.||++
T Consensus       442 ~~~-------~~~~~~~f---------~~~~~~~~~~~i~~~~~~~~~~  474 (481)
T TIGR00879       442 MLE-------SIGVGGVF---------IFFGGLNVLGLIFVYFFLPETK  474 (481)
T ss_pred             HHH-------hcCcccee---------hhHHHHHHHHHHHHheecccCC
Confidence            987       34444443         5555555544333 44556644

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.42  E-value=1.7e-12  Score=122.90  Aligned_cols=147  Identities=20%  Similarity=0.204  Sum_probs=110.9

Q ss_pred             HHHHHHHHHHhhccccchhhhHHHHH-HHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHH
Q 013991           43 LFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (432)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~  121 (432)
                      ++......++............|.+. +++|.+..+      .+...+...++..++.++.|+++||+|||+.+.....+
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~  294 (394)
T TIGR00883       221 FLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANS------ALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVL  294 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhH------HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence            44444445555555555666677665 678888888      89999999999999999999999999999987765544


Q ss_pred             HHHHH--HHHhh--hhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhH-HHHHHHHHHHHHHHHhhhcc
Q 013991          122 VVIFN--TLFGL--SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTV-STAWGIGLIIGPALGGFLAQ  195 (432)
Q Consensus       122 ~~~~~--~~~~~--~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~-~~~~~~g~~~g~~~~~~l~~  195 (432)
                      ..+..  .....  .++.+.+++..++.|++.+...+. .+++.|.+|+++|+++.++. +....+|..++|.+++.+.+
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~  374 (394)
T TIGR00883       295 AALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVA  374 (394)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHH
Confidence            44333  12222  246666777778888877666554 99999999999999999984 56667899999999999998

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=99.41  E-value=6.7e-10  Score=102.01  Aligned_cols=336  Identities=14%  Similarity=0.055  Sum_probs=209.0

Q ss_pred             HHHHHH-hcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 013991           65 YFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRF  143 (432)
Q Consensus        65 ~~~~~~-~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~  143 (432)
                      |++.+. .|.+.+|.     ..-+.-...-.+....++...++|..|.|++++++.+...+...+..+.++...+-+..+
T Consensus        28 ~yL~~~~kn~T~~qv-----~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~  102 (412)
T PF01770_consen   28 PYLTGPDKNFTEEQV-----NNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQF  102 (412)
T ss_pred             HHHcCCccCCCHHHH-----HHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHH
Confidence            555554 78887772     234445555667788889999999999999999999999999999999999999999999


Q ss_pred             HHhhhccchhhHHhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCcCCCcccccccccCccchHHHHHHH
Q 013991          144 LLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCIS  223 (432)
Q Consensus       144 ~~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~  223 (432)
                      +.|++.+.-.+-.+++-...|+++-.++.+...++.-+|-.++.++|..+...        +      ..++.....+..
T Consensus       103 ~yg~~~a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~--------~------~~sy~~L~~isl  168 (412)
T PF01770_consen  103 FYGLATAAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSF--------G------GVSYFQLNYISL  168 (412)
T ss_pred             HHHHHHHHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------c------CCCHHHHHHHHH
Confidence            99998777555589998889999999999999999999999999999988761        1      334555555555


Q ss_pred             HHHHHHHHHHhhcccccCC---CCCCCcchh---hhHHHhhhhhhhh--h-hhhc-----------cCCCCccccccchh
Q 013991          224 LFAFGVTIAAFWLPETLHR---HNDDDDSCD---VSYDALESASAEV--K-EEEG-----------REATPKKSLLKNWP  283 (432)
Q Consensus       224 ~~~~~~~~~~~~~~e~~~~---~~~~~~~~~---~~~~~~~~~~~~~--~-~~~~-----------~~~~~~~~~~~~~~  283 (432)
                      ....++++..+++|..++.   ++...++.+   ...+..++..++.  . +...           .-.+..++..++|.
T Consensus       169 ~~~~~a~~~~~fLP~~~~S~~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~  248 (412)
T PF01770_consen  169 ASVSLALLIALFLPMPKRSLFFHRKPPAEQDANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPR  248 (412)
T ss_pred             HHHHHHHHHHHHcCCCCcccceeccCccccccccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCch
Confidence            5555566666778775542   111111000   0000000000000  0 0000           01123344456776


Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhChhHHHHHHHHH
Q 013991          284 LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVL  363 (432)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  363 (432)
                      ++.-.+-+.+.........++......+.   ..-+-.....|..-+...+.+.++. +..+++..++.+...+.++...
T Consensus       249 ll~WSlWWa~atcgy~qv~nYvQ~LW~~v---~~~~~~~vYNG~VeA~~tllgA~~a-l~~g~v~~~w~~~~~l~l~~~S  324 (412)
T PF01770_consen  249 LLLWSLWWAFATCGYYQVINYVQSLWDTV---PPSDNESVYNGAVEAASTLLGAIAA-LLAGYVKVNWDRWGELALGVFS  324 (412)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHhc---CCCCCCcccchHHHHHHHHHHHHHH-HHHhHhhcchHHHHHHHHHHHH
Confidence            66555544444433333333322221111   0123345567888888888888887 4778886666665555544433


Q ss_pred             HH--HHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHHHHhh
Q 013991          364 TI--PLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWFVKL  429 (432)
Q Consensus       364 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~~~  429 (432)
                      ..  ..++++.+..+.+      +.++..++.........+....-++....++.-|-+.|+..|+-+
T Consensus       325 ~l~a~~L~lm~~t~~Iw------v~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~yaLVFGiNtf~Al  386 (412)
T PF01770_consen  325 LLQAGLLFLMSFTGNIW------VCYAGYIIFRSLYMFLITIASFQIAKNLSEERYALVFGINTFVAL  386 (412)
T ss_pred             HHHHHHHHHHHHhhHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeeeHHHHHH
Confidence            33  2333333332222      344555555555666677777777777888888888888777644

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.41  E-value=7.7e-12  Score=118.01  Aligned_cols=147  Identities=15%  Similarity=0.127  Sum_probs=118.8

Q ss_pred             hHHHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHH
Q 013991           42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (432)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~  121 (432)
                      .++......++............|.+.++.|.+..+      .|.+.+...++..+..++.|++.||+|+|+.+..+.++
T Consensus       206 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~  279 (382)
T PRK11128        206 TVWRFLLCVSLLQGSHAAYYGFSAIYWQAAGYSAST------IGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAIC  279 (382)
T ss_pred             hHHHHHHHHHHHHHHhHhHHHHHHHHHHHCCCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence            344334434444444444555666666788999888      89999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHH-HHHHHHHHHHHHHHhhhcc
Q 013991          122 VVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVS-TAWGIGLIIGPALGGFLAQ  195 (432)
Q Consensus       122 ~~~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~l~~  195 (432)
                      .+++.++.+.+++.+.+++..++.|++.+...+. ..++.+. +++++++..+..+ ...++|..+||.++|.+.+
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~  354 (382)
T PRK11128        280 GVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQ  354 (382)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9988888888999999999999999988877665 7788776 6667788888885 5667888999999999998

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.39  E-value=8.4e-12  Score=120.98  Aligned_cols=149  Identities=16%  Similarity=0.171  Sum_probs=110.1

Q ss_pred             hhHHHHHHHHHHhhccccchhhhHHHH-HHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHH
Q 013991           41 TELFSIWIIVLCTALPISSLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (432)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~  119 (432)
                      +.++...+..++............|.+ .+++|.+..+      .++..+...++..++.++.|+++||+|||+.+....
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~------a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~  331 (467)
T PRK09556        258 PVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKED------AINTFTLFEIGALVGSLLWGWLSDLANGRRALVACI  331 (467)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHH
Confidence            345555555555555555566677754 5678999988      899999999999999999999999999998876654


Q ss_pred             HHHHHHHHH--HhhhhhHHHHHHHHHHHhhhc-cchhhHHhhhhhhcccchhhhhhhhHHHHHHH-HHHHHHHHHhhhcc
Q 013991          120 ASVVIFNTL--FGLSVNFWMAVLTRFLLGSLN-GLLGPIKAYACEIFREEHQALGLSTVSTAWGI-GLIIGPALGGFLAQ  195 (432)
Q Consensus       120 ~~~~~~~~~--~~~~~~~~~l~~~r~~~G~~~-g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~~  195 (432)
                      .+..++...  ....++.+.+.+.+++.|++. +..........|.+|+++|+++.|+.+...++ |..++|.+.|.+.+
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~  411 (467)
T PRK09556        332 ALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIAD  411 (467)
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhc
Confidence            444433322  223346666777888888643 32233346677999999999999999988886 77999999999987

>TIGR00895 2A0115 benzoate transport

Probab=99.37  E-value=6.1e-12  Score=119.32  Aligned_cols=142  Identities=20%  Similarity=0.264  Sum_probs=111.9

Q ss_pred             HHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHH
Q 013991           46 IWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF  125 (432)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~  125 (432)
                      .+...++............|.+.+++|.+..+      .++..+...++..++.++.|+++||+|||+.+....+.....
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  328 (398)
T TIGR00895       255 LWLLYFMLLVGVYFLTNWLPKLMVELGFSLSL------AATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFA  328 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence            33444444444555566678888899999888      999999999999999999999999999995554444443333


Q ss_pred             HHHHhhhhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhh
Q 013991          126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL  193 (432)
Q Consensus       126 ~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  193 (432)
                      .++.....+.+.+++..++.|++.+...+. .+++.|.+|+++|++++++.+....+|..+||.++|.+
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       329 VLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            333333566777778888999987777665 99999999999999999999999999999999999876

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.36  E-value=1.1e-11  Score=119.55  Aligned_cols=172  Identities=13%  Similarity=0.069  Sum_probs=108.7

Q ss_pred             hhHHHHHHHHHHhhccccchhhhHHHHHH-HhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhcc--CChHHH-H
Q 013991           41 TELFSIWIIVLCTALPISSLFPFLYFMIK-DFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY--GRKPVI-I  116 (432)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~--Grr~~l-~  116 (432)
                      +.++...+..++...........+|.+.+ +.|.+..+      .++....+.++..++.++.|+++||+  |||+.. .
T Consensus       253 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~------~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~  326 (452)
T PRK11273        253 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDK------SSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGV  326 (452)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHH
Confidence            33444445544444444555667786665 47888888      88888899999999999999999999  555432 2


Q ss_pred             HHHHHHHHHHHHHhh--hhhHHHHHHHHHHHhhhccc-hhhHHhhhhhhcccchhhhhhhhHHHHHHHHHH-HHHHHHhh
Q 013991          117 MGTASVVIFNTLFGL--SVNFWMAVLTRFLLGSLNGL-LGPIKAYACEIFREEHQALGLSTVSTAWGIGLI-IGPALGGF  192 (432)
Q Consensus       117 ~~~~~~~~~~~~~~~--~~~~~~l~~~r~~~G~~~g~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~-~g~~~~~~  192 (432)
                      ....+..++.+....  ..+.+...+..++.|.+... ......+..|.+|+++|+++.|+.+....+|.. .+|.+.|.
T Consensus       327 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~  406 (452)
T PRK11273        327 FFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGY  406 (452)
T ss_pred             HHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHH
Confidence            222333333322222  23444444444445543222 222245678999999999999999888888765 58999999


Q ss_pred             hcccCCcCCCcccccccccCccchHHHHHHHHHHHHHHHHHh
Q 013991          193 LAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAF  234 (432)
Q Consensus       193 l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (432)
                      +.+       .+         +|+..+.+.+...++.++...
T Consensus       407 l~~-------~~---------g~~~~f~~~~~~~~~~~~~~~  432 (452)
T PRK11273        407 TVD-------FF---------GWDGGFMVMIGGSILAVILLI  432 (452)
T ss_pred             HHH-------Hh---------cchHHHHHHHHHHHHHHHHHH
Confidence            998       33         344444666655555444443

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.36  E-value=1.4e-11  Score=120.50  Aligned_cols=178  Identities=15%  Similarity=0.078  Sum_probs=107.6

Q ss_pred             chhhhHHHHHHHhcCCccccchh----hh-hhH-HHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHhhh
Q 013991           59 SLFPFLYFMIKDFQIAKREEDIG----SY-AGY-VGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS  132 (432)
Q Consensus        59 ~~~~~~~~~~~~~~~s~~~~~~~----~~-~~~-~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~  132 (432)
                      ......|.+.++.|.+..+....    .+ ... ......++..++.++.++++||+|||++++++.++.+++..+.+..
T Consensus       306 ~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~  385 (502)
T TIGR00887       306 GVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFA  385 (502)
T ss_pred             ccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHH
Confidence            34445677778888875431000    00 001 2333445666788899999999999999988888777776655543


Q ss_pred             hh----HHHHHHHHHHHhhh-ccchhhHHhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCcCCCccccc
Q 013991          133 VN----FWMAVLTRFLLGSL-NGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSE  207 (432)
Q Consensus       133 ~~----~~~l~~~r~~~G~~-~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~  207 (432)
                      .+    ...+...-+...++ .+.......+.+|.+|++.|+++.++.+....+|.+++|.+.+.+.+..++..   |+.
T Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~  462 (502)
T TIGR00887       386 YNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTK---GYP  462 (502)
T ss_pred             HHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccc---ccc
Confidence            21    11111111111222 22222237778999999999999999999999999999999999887321100   000


Q ss_pred             ccccCccchHHHHHHHHHHHHHHHHHhhcccccCC
Q 013991          208 SLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHR  242 (432)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  242 (432)
                      .   ..++..++.+.++..++..+..+++||++.+
T Consensus       463 ~---~~~~~~~~~i~~~~~~~~~i~~~~lpEt~~~  494 (502)
T TIGR00887       463 T---GIWMGHVLEIFALFMFLGILFTLLIPETKGK  494 (502)
T ss_pred             c---cccchHHHHHHHHHHHHHHHHheEeccCCCC
Confidence            0   1123334455555555544455677987653

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.35  E-value=2.4e-11  Score=116.63  Aligned_cols=167  Identities=14%  Similarity=0.046  Sum_probs=107.4

Q ss_pred             hHHHHHHHHHHhhccccchhhhHHHHH-HHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhcc--CCh-HHHHH
Q 013991           42 ELFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY--GRK-PVIIM  117 (432)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~--Grr-~~l~~  117 (432)
                      .++.+.+..++...........+|.+. +++|.+..+      .+...+.+.++..++.++.|+++||+  ++| +....
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~------a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~  317 (434)
T PRK11663        244 YIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVT------ANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLI  317 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHH------HHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHH
Confidence            344444444444444445556677665 678999988      89999999999999999999999999  333 32222


Q ss_pred             HHHH---HHHHHHHHhhhhhHHHHHHHHHHHhhhccchhh-HHhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhh
Q 013991          118 GTAS---VVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL  193 (432)
Q Consensus       118 ~~~~---~~~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  193 (432)
                      ..+.   ..++..... ..+...+.+..+..|++...... ....+.|.+|+++|++++|+.+....+|..++|.+.+++
T Consensus       318 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l  396 (434)
T PRK11663        318 FAAGILLSVGSLWLMP-FASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKV  396 (434)
T ss_pred             HHHHHHHHHHHHHHcc-cccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHH
Confidence            2111   111111111 22333333444444543222222 255678999999999999999999999999999999999


Q ss_pred             cccCCcCCCcccccccccCccchHHHHHHHHHHHHHHH
Q 013991          194 AQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTI  231 (432)
Q Consensus       194 ~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~  231 (432)
                      .+                ..+|...+.+.+++.++..+
T Consensus       397 ~~----------------~~g~~~~f~~~~~~~~~~~~  418 (434)
T PRK11663        397 LE----------------IWHWTGFFVVISIAAGISAL  418 (434)
T ss_pred             HH----------------hcccHHHHHHHHHHHHHHHH
Confidence            98                33445555666666555433

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.35  E-value=6e-12  Score=117.87  Aligned_cols=128  Identities=16%  Similarity=0.185  Sum_probs=114.4

Q ss_pred             hhHHHHHHH-hcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHhhhhh-HHHHH
Q 013991           62 PFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVN-FWMAV  139 (432)
Q Consensus        62 ~~~~~~~~~-~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~-~~~l~  139 (432)
                      ...|.+.++ +|.+..+      .+++.+...++..++.++.|++.||+|||+.+..+..+.+++.....+.++ .+.++
T Consensus       232 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (365)
T TIGR00900       232 ALFPYVQSKYLGRGSTH------YGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFL  305 (365)
T ss_pred             HHhHHHHHHHhCCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHH
Confidence            566777665 8888888      999999999999999999999999999999999888888888877777764 88888


Q ss_pred             HHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcc
Q 013991          140 LTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (432)
Q Consensus       140 ~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (432)
                      +..++.|++.+...+. .+++.|..|+++|++..++.+....+|..++|.++|.+.+
T Consensus       306 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~  362 (365)
T TIGR00900       306 VLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLAD  362 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8899999988887775 8999999999999999999999999999999999999987

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.34  E-value=1.1e-11  Score=117.86  Aligned_cols=130  Identities=18%  Similarity=0.262  Sum_probs=104.1

Q ss_pred             hhhhHH-HHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHH-HHhhhhhHHH
Q 013991           60 LFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNT-LFGLSVNFWM  137 (432)
Q Consensus        60 ~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~-~~~~~~~~~~  137 (432)
                      .....| ++.+++|.+..+      .+++.+...++..++.++.|++.||+|||+.+.++.++..+..+ .....++.+.
T Consensus       257 ~~~~~~~~~~~~~g~s~~~------~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (405)
T TIGR00891       257 IQDLLPTYLKADLGLSPHT------VANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAV  330 (405)
T ss_pred             hhhhhHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHH
Confidence            334455 445678999888      99999999999999999999999999999998888766533332 3334456666


Q ss_pred             HHHHHHHHhhhccchhh-HHhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcc
Q 013991          138 AVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (432)
Q Consensus       138 l~~~r~~~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (432)
                      +.+..++.|+..+...+ ..+++.|.+|+++|++++|+.+....+|..++|.++|.+.+
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~  389 (405)
T TIGR00891       331 LGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQ  389 (405)
T ss_pred             HHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666777765444444 48889999999999999999999999999999999999998

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.33  E-value=6.2e-11  Score=113.42  Aligned_cols=179  Identities=13%  Similarity=0.178  Sum_probs=140.1

Q ss_pred             hhHHHHHHHHHHhhccccchhhhHH-HHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCCh--HHHHH
Q 013991           41 TELFSIWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRK--PVIIM  117 (432)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr--~~l~~  117 (432)
                      +.++...++.++..-+.+.+..... +..+++|.+..+      ...+.-+..+..+++++++|++.||+|.|  +++.+
T Consensus       281 ~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~------l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~  354 (477)
T PF11700_consen  281 RQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQ------LIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLI  354 (477)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHH
Confidence            4455555566655555555555555 445689999999      88888889999999999999999999999  88888


Q ss_pred             HHHHHHHHHHHHhh--------hhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHH
Q 013991          118 GTASVVIFNTLFGL--------SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPA  188 (432)
Q Consensus       118 ~~~~~~~~~~~~~~--------~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~  188 (432)
                      +++...+..+...+        .++.+.+.+.-++.|+..|...+. .++.+|+.|+++.+..+|++....-....+||+
T Consensus       355 ~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPl  434 (477)
T PF11700_consen  355 SLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPL  434 (477)
T ss_pred             HHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence            88877665555444        567788999999999999988886 999999999999999999999999999999999


Q ss_pred             HHhhhcccCCcCCCcccccccccCccchHHHHHHHHHHHHHHHHHhhccccc
Q 013991          189 LGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETL  240 (432)
Q Consensus       189 ~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  240 (432)
                      +.+.+.+.++               +.|..+....++.++.++.+.++++.+
T Consensus       435 l~g~i~~~tg---------------~~r~g~~~l~~lf~~gl~ll~~v~~~~  471 (477)
T PF11700_consen  435 LFGLITDATG---------------SQRYGFLFLLVLFLIGLILLFFVDVEK  471 (477)
T ss_pred             HHHHHHHHhC---------------CchhHHHHHHHHHHHHHHHHhhccchh
Confidence            9999998432               234444555556566666666665543

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.32  E-value=3.8e-11  Score=115.17  Aligned_cols=130  Identities=19%  Similarity=0.229  Sum_probs=98.9

Q ss_pred             hhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 013991           60 LFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAV  139 (432)
Q Consensus        60 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~  139 (432)
                      +...+|.+.++.|.+..+      .+...+...++..++.++.|++.||+|||+.+..+.++..+..+.....++.....
T Consensus       250 ~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (426)
T PRK12307        250 IFGLLPTYLAGEGFDTGV------VSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLL  323 (426)
T ss_pred             HHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHH
Confidence            445667777778888877      88888999999999999999999999999999888877766655444332211122


Q ss_pred             HHHHHHhh--hccchhh-HHhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcc
Q 013991          140 LTRFLLGS--LNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (432)
Q Consensus       140 ~~r~~~G~--~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (432)
                      +.-.+.|+  +.....+ ...++.|.+|+++|++++|+......+|..++|.+.+++.+
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~  382 (426)
T PRK12307        324 LGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGI  382 (426)
T ss_pred             HHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHH
Confidence            22223333  2222333 37788999999999999999999999999999999999987

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=99.32  E-value=1e-08  Score=95.98  Aligned_cols=354  Identities=13%  Similarity=0.073  Sum_probs=197.5

Q ss_pred             hHHHHHHHHHHhhccccchhhhHHHHHHHhcCC-ccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHH
Q 013991           42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIA-KREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (432)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~  120 (432)
                      ....+....++...+.-+.....+.+..+...+ --.      .+...-.-.+..++.++..|.+.||..|.++...+.+
T Consensus         3 ~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~------~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~   76 (432)
T PF06963_consen    3 ALWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLP------VSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLV   76 (432)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHH------HHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHH
Confidence            345677788888888888888888777776442 222      4555555566778889999999999999998766654


Q ss_pred             HHH----HHHHHHhh--h--h----hHHH---HHHHHHHHhhhccchhhH--Hhhhhhh----c--ccchhhhhhhhHHH
Q 013991          121 SVV----IFNTLFGL--S--V----NFWM---AVLTRFLLGSLNGLLGPI--KAYACEI----F--REEHQALGLSTVST  177 (432)
Q Consensus       121 ~~~----~~~~~~~~--~--~----~~~~---l~~~r~~~G~~~g~~~~~--~~~i~~~----~--~~~~r~~~~~~~~~  177 (432)
                      .--    +++.+...  .  .    +-+.   +++.-.+.|.-.-....+  .++=.||    .  +++.+.+..+.+.-
T Consensus        77 ~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRR  156 (432)
T PF06963_consen   77 VQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRR  156 (432)
T ss_pred             HHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHH
Confidence            432    22222221  1  1    1121   222222222211111112  1112333    2  34455566666655


Q ss_pred             HHHHHHHHHHHHHhhhcccCCcCCCcccccccccCccchHHHHHHHHHHHHHHHH-Hhhc----ccccC---CCCCCCcc
Q 013991          178 AWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWL----PETLH---RHNDDDDS  249 (432)
Q Consensus       178 ~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~e~~~---~~~~~~~~  249 (432)
                      .=-+.-+++|++.|.+.+                ..+......+.+...++.+.. .+++    .+.|.   +++.++++
T Consensus       157 IDL~ckllaPl~vG~l~t----------------~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L~~~~~~~~~~  220 (432)
T PF06963_consen  157 IDLFCKLLAPLFVGLLMT----------------FASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPALAVKKRSSESE  220 (432)
T ss_pred             HHHHHHHHHHHHHHHHhh----------------ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhcCCCCCcccc
Confidence            566789999999999987                333333334344333332222 1211    12221   11111111


Q ss_pred             hhhhHH------HhhhhhhhhhhhhccCCCCccccccchhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccc
Q 013991          250 CDVSYD------ALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQ  323 (432)
Q Consensus       250 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~  323 (432)
                      .+...+      ......+...+.-++....++..++++.+.... ...+.++...++......|+...      |+++.
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~vflas~-alalLY~TVLsf~~lmt~yl~~~------G~s~~  293 (432)
T PF06963_consen  221 SSSDEESSSESSSDPSILKRLWNPLRTIIRGWRTYFRQPVFLASF-ALALLYFTVLSFGGLMTAYLKSQ------GYSPS  293 (432)
T ss_pred             ccccccccccccchhhHHHHHHHHHHHHhccHHHHHhCHHHHHHH-HHHHHHHHHhcCcHHHHHHHHHC------CCCHH
Confidence            110000      000000011111222345677778877665544 44444444567788888888875      99999


Q ss_pred             hhhHHHHHHHHHHHHHHHHhHHHHHHHhChhHHHHHHHHHHHHHHHHhhHHHhhhh----hHHHHHHHHHHHHHHhhhhh
Q 013991          324 MVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSG----FGLAFLLNCASVVKNLLSVS  399 (432)
Q Consensus       324 ~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~  399 (432)
                      ..|.+-+...+.++.+. ++.+++.+|+|..+.-.++.......+.+....-..++    ......++.+..+.-++--+
T Consensus       294 ~igi~R~~gav~Gl~gT-~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~  372 (432)
T PF06963_consen  294 VIGIFRGLGAVFGLLGT-WVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWS  372 (432)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHh
Confidence            99999999999999988 69999999999988877776655443332222111111    12223333344443333344


Q ss_pred             HHHHHHHHHhccccccchhhhhhHHH
Q 013991          400 IITGLFILQNRAVVRVLTYTLSCHFW  425 (432)
Q Consensus       400 ~~~~~~~~~~~~~p~~~~g~~~~~~~  425 (432)
                      +=.+.+.++.|.+|+++||+.+|+=.
T Consensus       373 fDL~~~qi~Qe~V~~~~Rg~v~gvq~  398 (432)
T PF06963_consen  373 FDLAVTQIMQENVPESERGAVSGVQN  398 (432)
T ss_pred             hhHHHHHhhcccCCHHHhhHHHHHHH
Confidence            44567778899999999999988643

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PRK10504 putative transporter; Provisional

Probab=99.31  E-value=4.6e-11  Score=116.12  Aligned_cols=149  Identities=15%  Similarity=0.176  Sum_probs=116.5

Q ss_pred             hhHHHHHHHHHHhhccccchhhhHHHHHH-HhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHH
Q 013991           41 TELFSIWIIVLCTALPISSLFPFLYFMIK-DFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (432)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~  119 (432)
                      +.+.......++............|++.+ .+|.++.+      .++......++..++.++.|++.||+|||+++..+.
T Consensus       261 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~  334 (471)
T PRK10504        261 RTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFH------AGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATT  334 (471)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHH
Confidence            34444445555555555555556676665 58888887      899998888888888999999999999999999998


Q ss_pred             HHHHHHHHHHhhh---hhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcc
Q 013991          120 ASVVIFNTLFGLS---VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (432)
Q Consensus       120 ~~~~~~~~~~~~~---~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (432)
                      ++..+...+..+.   ++.+.+.+..++.|++.+...+. ..++.+..|+++|+.+.++.+....+|..+|+.+++.+.+
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~  414 (471)
T PRK10504        335 LGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLG  414 (471)
T ss_pred             HHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888776666553   33444455667778877766554 8888899999999999999999999999999999999887

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.31  E-value=1.4e-10  Score=112.17  Aligned_cols=137  Identities=18%  Similarity=0.252  Sum_probs=121.3

Q ss_pred             hhccccchhhhHHHHH-HHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHhh
Q 013991           53 TALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGL  131 (432)
Q Consensus        53 ~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~  131 (432)
                      ..+....+...+|.+. +++|.+...      .|++.+++.+|.+++++..+++.+|+++++.+..+.++.+++.+..++
T Consensus       230 ~~l~~~a~~aLlPl~a~~~l~~~a~~------yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal  303 (524)
T PF05977_consen  230 FNLFASAVWALLPLFARDVLGGGASG------YGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLAL  303 (524)
T ss_pred             HHHhhhHHHHhhhHHHHHHhCCcHHH------HHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhc
Confidence            3333344456678665 568888888      999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcc
Q 013991          132 SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (432)
Q Consensus       132 ~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (432)
                      +++.+..++.-++.|++.....+. .+.+.+..|++.|||.++++++....+..+|..+.|.+.+
T Consensus       304 ~~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~  368 (524)
T PF05977_consen  304 SPSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLAD  368 (524)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999987776654 8899999999999999999999999999999999999998

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.30  E-value=1.5e-10  Score=105.72  Aligned_cols=173  Identities=14%  Similarity=0.149  Sum_probs=130.0

Q ss_pred             CchhHHHHHHHHHHhhccccchhhhH-HHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHH
Q 013991           39 PITELFSIWIIVLCTALPISSLFPFL-YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM  117 (432)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~  117 (432)
                      +++.++...+..++...+......++ |.+.+..|.+.+.      ++++.-.|.++..+++.+.|+++|| +.|+.+..
T Consensus       209 ~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~------vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~  281 (394)
T COG2814         209 RRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSA------VSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIA  281 (394)
T ss_pred             cCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhH------HHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHH
Confidence            34456655666666666555555555 6777788999998      9999999999999999999999999 88888888


Q ss_pred             HHHHHHHHHHHHhhh-hhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcc
Q 013991          118 GTASVVIFNTLFGLS-VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (432)
Q Consensus       118 ~~~~~~~~~~~~~~~-~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (432)
                      ...+..+..+...+. ++.+..++.-++.|++.+..... ..-+++ ..||.+..+.++....+++|..+|..+||.+.+
T Consensus       282 ~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~  360 (394)
T COG2814         282 ALLLLALALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLD  360 (394)
T ss_pred             HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            877777766665554 45555555656666655544443 555555 447889999999999999999999999999999


Q ss_pred             cCCcCCCcccccccccCccchHHHHHHHHHHHHHHHHHhh
Q 013991          196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFW  235 (432)
Q Consensus       196 ~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (432)
                                      ++++..+..+.+++.+..++..+.
T Consensus       361 ----------------~~g~~~~~~~~a~l~~~a~~~~~~  384 (394)
T COG2814         361 ----------------ALGYAATGWVGAALLLLALLLALL  384 (394)
T ss_pred             ----------------hhchHHHHHHHHHHHHHHHHHHHH
Confidence                            556666667777777766555444

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.29  E-value=5.2e-11  Score=113.01  Aligned_cols=129  Identities=16%  Similarity=0.083  Sum_probs=105.9

Q ss_pred             hhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhccchhhH-Hhhhhhh
Q 013991           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEI  162 (432)
Q Consensus        84 ~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~  162 (432)
                      .|.+.+...+...++.+..|++.||+|||+.+.++.++.++...+...+++.+.+++.+++.|++.+..... ..+..+.
T Consensus       256 ~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~  335 (396)
T TIGR00882       256 FGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQ  335 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            788888888889999999999999999999999999988888888788889998899999999886555443 6677788


Q ss_pred             cccchhhhhhhh-HHHHHHHHHHHHHHHHhhhcccCCcCCCcccccccccCccchHHHHHHHHHHHH
Q 013991          163 FREEHQALGLST-VSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFG  228 (432)
Q Consensus       163 ~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~  228 (432)
                      .+++.++...+. .+....+|..++|.++|++.+                ..+|+.++.+.++..++
T Consensus       336 ~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~----------------~~G~~~~f~~~~~~~~i  386 (396)
T TIGR00882       336 FDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYD----------------SIGFQGAYLVLGCIVLL  386 (396)
T ss_pred             CCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHH----------------hcccHHHHHHHHHHHHH
Confidence            888888777666 578899999999999999998                44455555666655544

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.26  E-value=3.3e-10  Score=106.71  Aligned_cols=168  Identities=18%  Similarity=0.226  Sum_probs=120.0

Q ss_pred             hhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHhhh
Q 013991           53 TALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS  132 (432)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~  132 (432)
                      ..-+.+.+..+...+.++-|++.++      +.+.+....+...+..+++..+.||+|||+.++++..+..+..+++...
T Consensus       282 q~sGi~ai~~Yst~i~~~aG~~~~~------a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~  355 (485)
T KOG0569|consen  282 QFSGINAIFFYSTSIFKTAGFTPEE------AQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIA  355 (485)
T ss_pred             HhcCcceeHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHH
Confidence            3445556666667888999999998      8899999999999999999999999999999999999998888777653


Q ss_pred             h----hH--H---HHHHHHHHHhhhccc-hhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCcCC
Q 013991          133 V----NF--W---MAVLTRFLLGSLNGL-LGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYP  201 (432)
Q Consensus       133 ~----~~--~---~l~~~r~~~G~~~g~-~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~  201 (432)
                      .    ..  |   ..+++.++..++.+. ..|. .-+.+|.+|++.|..+++.......++..+-...-..+.+      
T Consensus       356 ~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~------  429 (485)
T KOG0569|consen  356 LFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQN------  429 (485)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence            2    11  1   122333334443222 3454 8889999999999999999888888777766666666655      


Q ss_pred             CcccccccccCccchHHHHHHHHHHH-HHHHHHhhcccccCCC
Q 013991          202 NLFSSESLFGKFPYFLPCLCISLFAF-GVTIAAFWLPETLHRH  243 (432)
Q Consensus       202 ~~~gw~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~~~~~  243 (432)
                                .++- ..++...+..+ ..+..++.+||++.+.
T Consensus       430 ----------~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~  461 (485)
T KOG0569|consen  430 ----------VIGP-YVFILFVIPLAIFLIYLYRYLPETKGRT  461 (485)
T ss_pred             ----------Hhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCC
Confidence                      1121 11233444443 3556677899987554

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.26  E-value=1.5e-10  Score=110.14  Aligned_cols=334  Identities=17%  Similarity=0.171  Sum_probs=188.1

Q ss_pred             hhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccC-----ChHHHHHHHHHHHHHHHHHhhh---
Q 013991           61 FPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYG-----RKPVIIMGTASVVIFNTLFGLS---  132 (432)
Q Consensus        61 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G-----rr~~l~~~~~~~~~~~~~~~~~---  132 (432)
                      .+..|.+.+++|.++++      ...+.+...+.. ...+++|.++|-+.     ||+-++++.++..++.+.++..   
T Consensus        10 ~~~~~~l~~~l~ls~~~------~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~   82 (433)
T PF03092_consen   10 LAIYPFLKDDLGLSPAQ------LQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPAS   82 (433)
T ss_pred             HHHHHHHHHHcCCCHHH------HHHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccc
Confidence            45567888999999999      777777777775 45889999999763     5666777777776666655543   


Q ss_pred             -hhHHHHHHHHHHHhhhccchhhH-Hhhhhhhcc--cchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCcCCCcccccc
Q 013991          133 -VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFR--EEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSES  208 (432)
Q Consensus       133 -~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~--~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~  208 (432)
                       .+.....+.-++..+|......+ -+++.|...  +++|+...+.......+|.+++..++|.+.+       ..+.+.
T Consensus        83 ~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~-------~~~~~~  155 (433)
T PF03092_consen   83 ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLD-------SFGPQG  155 (433)
T ss_pred             cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhh-------cCCCeE
Confidence             24555555556666666666554 777777773  3448888889899999999999999999988       344444


Q ss_pred             cccCccchHHHHHHHHHHHHHH-HHHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhccCCCCccccccchhHHHH
Q 013991          209 LFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSS  287 (432)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (432)
                      .|         .+.+.+..+.. ...+..+|.+++...+......  ++.+... .   .-++.....++.++++.++..
T Consensus       156 ~f---------~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~--~~~~~~~-~---~~~~~~~~l~~~~~~~~i~~~  220 (433)
T PF03092_consen  156 VF---------LISAALPLLMLIVALFLLEERKVRPADEVFSFGK--EEVPCLF-G---SFREQLSELWRALQQRAIWQP  220 (433)
T ss_pred             Ee---------hHHHHHHHHHHHHHHHhhhhccccccchhhcccc--cccchhh-H---HHHHHHHHHHHHHhhhHHHHH
Confidence            43         45554444433 3344455522111110000000  0000000 0   001111234455666777766


Q ss_pred             HH-HHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhChhHHHHHHHHHHHH
Q 013991          288 II-VYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIP  366 (432)
Q Consensus       288 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  366 (432)
                      .+ ..++.......... -..|...+. ..+.++++...|.+..+..++..++. .+..+.-.+.+-|++.....++..+
T Consensus       221 ~~~~~~~~~~~~~~~~a-~~fy~~~~~-~~gp~fs~~f~~~~~~vg~~~~l~g~-~~y~~~~~~~~~R~~~~~t~~~~~~  297 (433)
T PF03092_consen  221 ILFFIFFFNLPPSISSA-SSFYFQTDA-LGGPHFSPSFYGTLSIVGSIASLLGI-LLYRKYFSNWSWRRIFVVTTLVSVL  297 (433)
T ss_pred             HHHHHHHHHhccCCCCc-cEEEEEecc-ccccccCHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCCHHHHHHHHHHHHHH
Confidence            55 22222222111111 011222221 11445899999988877777777765 4555555666777777666655544


Q ss_pred             HHHHh-hHHHhhh---h-hHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHHHH
Q 013991          367 LLTSY-PYIAMLS---G-FGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWFV  427 (432)
Q Consensus       367 ~~~~~-~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~  427 (432)
                      ..+.- ......+   + ...+. ...-..+........+-....++++..|+...|+.+|+...+
T Consensus       298 ~~l~~~~lv~~~n~~~Gi~d~~f-~lgd~~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~  362 (433)
T PF03092_consen  298 ASLFDLLLVTRWNLDLGIPDQWF-ALGDTILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASF  362 (433)
T ss_pred             HhcccEEEEEEEeeeeCcCCeEE-EEEhHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHH
Confidence            32221 1111000   0 00111 111222233334444455677889999999999999887654

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.25  E-value=6.5e-11  Score=114.82  Aligned_cols=153  Identities=10%  Similarity=0.051  Sum_probs=97.3

Q ss_pred             hhhHHHH-HHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCCh-------HHHHHHHHHHHHHHHHHhhh
Q 013991           61 FPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRK-------PVIIMGTASVVIFNTLFGLS  132 (432)
Q Consensus        61 ~~~~~~~-~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr-------~~l~~~~~~~~~~~~~~~~~  132 (432)
                      ....|.+ .+++|.+..+      .+.+.+.+.++..++.++.|+++||+|||       ....+..++.++..++....
T Consensus       272 ~~~~p~~l~~~~g~s~~~------a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~  345 (476)
T PLN00028        272 DNIIAEYFYDRFGLSLET------AGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRA  345 (476)
T ss_pred             HhHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhccc
Confidence            3445544 5668999888      99999999999999999999999999865       23333334444444444555


Q ss_pred             hhHHHHHHHHHHHhhhccchhh-HHhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCcCCCccccccccc
Q 013991          133 VNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFG  211 (432)
Q Consensus       133 ~~~~~l~~~r~~~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~  211 (432)
                      ++.+...+.-++.+++.+.... ..+++.+.. +++|+...|+.+.+..+|..++|.+.+ ..+                
T Consensus       346 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~----------------  407 (476)
T PLN00028        346 NSLGAAIVVMILFSIFVQAACGATFGIVPFVS-RRSLGVISGLTGAGGNVGAVLTQLLFF-TGS----------------  407 (476)
T ss_pred             chHHHHHHHHHHHHHHHHHhhhhhcccCcccC-hhhchhhhhhhhccccHHHHHHHHHHH-hcC----------------
Confidence            5655555555555554333333 355566654 578999999987776666666665533 111                


Q ss_pred             CccchHHHHHHHHHHHHHHHHHhhcc
Q 013991          212 KFPYFLPCLCISLFAFGVTIAAFWLP  237 (432)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (432)
                      ..+|...+.+.+++.++..+..++++
T Consensus       408 ~~~y~~~f~~~~~~~~i~~~~~~~~~  433 (476)
T PLN00028        408 SYSTETGISLMGVMIIACTLPVAFIH  433 (476)
T ss_pred             CccHhhHHHHHHHHHHHHHHHHHhee
Confidence            22345555666666666655555554

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.25  E-value=8.4e-11  Score=111.34  Aligned_cols=158  Identities=15%  Similarity=0.122  Sum_probs=109.9

Q ss_pred             HHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHh-HHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHH
Q 013991           51 LCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFM-FGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLF  129 (432)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~-~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~  129 (432)
                      ++............+.+.+|.|.++++      .|++..... ....++.++.|++.||+|+|+.+..+.++..+..+..
T Consensus       218 ~l~~~~~~~~~~~~~~~l~~~G~s~~~------ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~  291 (390)
T TIGR02718       218 LLSAMTAVSGFGLSKLYLVDAGWPLEW------IGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLW  291 (390)
T ss_pred             HHHHHHHHHHHHHhhHHHHhcCCCHHH------HHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            333333334444566677788999998      999888776 4666778999999999999999988776653333222


Q ss_pred             hh------hhhHHHHHHHHHHHhhhccchhhH-Hhhhhhhccc-chhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCcCC
Q 013991          130 GL------SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFRE-EHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYP  201 (432)
Q Consensus       130 ~~------~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~-~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~  201 (432)
                      ..      .++...+.....+.+++.+...+. .+.+.+..++ +++++.++..+...++|..+||.++|.+.+      
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~------  365 (390)
T TIGR02718       292 FAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTD------  365 (390)
T ss_pred             HHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence            21      123333444445556666666554 7776677765 889999999999999999999999999998      


Q ss_pred             CcccccccccCccchHHHHHHHHHHHHHH
Q 013991          202 NLFSSESLFGKFPYFLPCLCISLFAFGVT  230 (432)
Q Consensus       202 ~~~gw~~~~~~~~~~~~~~~~~~~~~~~~  230 (432)
                                ..++...+...+++.++.+
T Consensus       366 ----------~~G~~~~f~~~~~~~l~a~  384 (390)
T TIGR02718       366 ----------RFGYAGGFLSGTVLAVLAI  384 (390)
T ss_pred             ----------HHccHHHHHHHHHHHHHHH
Confidence                      3445555566655554443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00898 2A0119 cation transport protein

Probab=99.25  E-value=6.9e-11  Score=115.98  Aligned_cols=137  Identities=20%  Similarity=0.118  Sum_probs=103.1

Q ss_pred             HHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHhhhhhH--HHHHHHHHHHhhhccchhhH-Hhhhhhhcc
Q 013991           88 GSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF--WMAVLTRFLLGSLNGLLGPI-KAYACEIFR  164 (432)
Q Consensus        88 ~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~--~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~  164 (432)
                      .....+...++.++.+++.||+|||+.+.++.++.+++.++..+.++.  +...+.-++.+++.+...+. ..+.+|.+|
T Consensus       361 ~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p  440 (505)
T TIGR00898       361 LFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYP  440 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            344556677888999999999999999999999988888877776543  44444445555555554454 889999999


Q ss_pred             cchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCcCCCcccccccccCccchHHHHHHHHHHHHHHHHHhhcccccCC
Q 013991          165 EEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHR  242 (432)
Q Consensus       165 ~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  242 (432)
                      ++.|++++|+.+....+|.+++|.+.+ +.+                 .++..++.+.++..++..+..+++||+..+
T Consensus       441 ~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~lpet~~~  500 (505)
T TIGR00898       441 TVVRNLGVGVCSTMARVGSIISPFLVY-LGE-----------------KWLFLPLVLFGGLALLAGILTLFLPETKGV  500 (505)
T ss_pred             HHHHhhhHhHHHHHHHHHHHHHhHHHH-HHH-----------------HHHhhHHHHHHHHHHHHHHHHHcCcCCCCC
Confidence            999999999999999999999999988 432                 223445566666666666666778887543

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.24  E-value=3e-11  Score=116.27  Aligned_cols=148  Identities=14%  Similarity=0.180  Sum_probs=109.6

Q ss_pred             hhHHHHHHHHHHhhccccchhhhHHHHHHH-hcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHH
Q 013991           41 TELFSIWIIVLCTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (432)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~  119 (432)
                      +.++...+..++............+++.++ ++ +..+      .+++.+...++..++.+++++++||+|+|+.+.++.
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~  294 (437)
T TIGR00792       222 DQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPEL------FSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGI  294 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence            344444444444444333333333444433 33 3444      677778889999999999999999999999999998


Q ss_pred             HHHHHHHHHHhhh-hhHHHHHHHHHHHhhhccchhhH-Hhhhhhhcc-------cchhhhhhhhHHHHHHHHHHHHHHHH
Q 013991          120 ASVVIFNTLFGLS-VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFR-------EEHQALGLSTVSTAWGIGLIIGPALG  190 (432)
Q Consensus       120 ~~~~~~~~~~~~~-~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~-------~~~r~~~~~~~~~~~~~g~~~g~~~~  190 (432)
                      ++.+++.+...+. ++.+.+++..++.|++.+...+. .++++|..+       ++++|...++.+....+|..+++.+.
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~  374 (437)
T TIGR00792       295 LLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLV  374 (437)
T ss_pred             HHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888887776664 45667777778888888777665 888888865       45679999999999999999999999


Q ss_pred             hhhcc
Q 013991          191 GFLAQ  195 (432)
Q Consensus       191 ~~l~~  195 (432)
                      +.+.+
T Consensus       375 g~ll~  379 (437)
T TIGR00792       375 GLILG  379 (437)
T ss_pred             HHHHH
Confidence            99987

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.24  E-value=6.8e-10  Score=108.25  Aligned_cols=132  Identities=17%  Similarity=0.150  Sum_probs=99.1

Q ss_pred             ccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHhhhh--h
Q 013991           57 ISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSV--N  134 (432)
Q Consensus        57 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~  134 (432)
                      ........|.+.++.|.+..+      .++......+...++.++.|+++||+|||++++.+.++.+++.++++...  +
T Consensus       287 ~~~~~~~~p~i~~~~g~~~~~------~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~  360 (479)
T PRK10077        287 INVVLYYAPEIFKTLGASTDI------ALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQ  360 (479)
T ss_pred             hhHHHHHHHHHHHHcCCCCch------HHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcC
Confidence            334445568888889988776      67777778888899999999999999999999999999888877765432  1


Q ss_pred             H-H-HHHHHHHHHhhhccc-hhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhc
Q 013991          135 F-W-MAVLTRFLLGSLNGL-LGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (432)
Q Consensus       135 ~-~-~l~~~r~~~G~~~g~-~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  194 (432)
                      . + ....+-++.+.+.+. ..+. ..+++|.+|+++|++++++.+....+|.++++.+.+.+.
T Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~  424 (479)
T PRK10077        361 APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMD  424 (479)
T ss_pred             cccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            1 1 222233334443332 3354 899999999999999999999999999998877766554

>PRK15075 citrate-proton symporter; Provisional

Probab=99.24  E-value=1.2e-10  Score=111.76  Aligned_cols=137  Identities=18%  Similarity=0.175  Sum_probs=98.1

Q ss_pred             hhccccchhhhHHHHHHH-hcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHH-HHh
Q 013991           53 TALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNT-LFG  130 (432)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~-~~~  130 (432)
                      ............|.+.++ +|.+..+      .++....+.++..++.++.|+++||+|||+++.++.++..+... ...
T Consensus       250 ~~~~~~~~~~~~p~~l~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~  323 (434)
T PRK15075        250 TTVSFYLITVYTPTFGKTVLHLSAAD------SLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALS  323 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence            344444566667776654 7998888      88888889999999999999999999999998876544433221 111


Q ss_pred             ---hhhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHH-HHHHHHHHHHHHHhhhcc
Q 013991          131 ---LSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVST-AWGIGLIIGPALGGFLAQ  195 (432)
Q Consensus       131 ---~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~-~~~~g~~~g~~~~~~l~~  195 (432)
                         ..++...+.+..++.|++.+...+. ..++.|.+|+++|+.++++... +..++..++|.+.+++.+
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~  393 (434)
T PRK15075        324 WLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIH  393 (434)
T ss_pred             HHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHH
Confidence               1234444444455566665555554 7788999999999999998644 444557789999999988

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.24  E-value=5.7e-11  Score=111.80  Aligned_cols=147  Identities=16%  Similarity=0.152  Sum_probs=102.0

Q ss_pred             HHHHHHHHHHhhccccchhhhHHHH-HHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCC-hHHHH-HHH
Q 013991           43 LFSIWIIVLCTALPISSLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGR-KPVII-MGT  119 (432)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Gr-r~~l~-~~~  119 (432)
                      ++.+.+..++............|.+ .+++|.+..+      .++..+...++..++.++.|++.||.++ |+... ...
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~  291 (379)
T TIGR00881       218 LWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEK------ASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFF  291 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHH
Confidence            3444444454444445555666655 4567998888      9999999999999999999999998643 33222 221


Q ss_pred             -HHHHHHHHHHhh--hhhHHHHHHHHHHHhhhccchhh-HHhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcc
Q 013991          120 -ASVVIFNTLFGL--SVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (432)
Q Consensus       120 -~~~~~~~~~~~~--~~~~~~l~~~r~~~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (432)
                       ....++......  ..+.+...+..++.|+......+ ...+..|..|+++|+++.++.+....+|..++|.+.|.+.+
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~  371 (379)
T TIGR00881       292 MALIIVSLLVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLAD  371 (379)
T ss_pred             HHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHH
Confidence             222222222222  23455555666677765433333 47788999999999999999999999999999999999998

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.24  E-value=2e-10  Score=109.37  Aligned_cols=127  Identities=13%  Similarity=-0.003  Sum_probs=101.2

Q ss_pred             hhHHHH-HHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHhhh-----hhH
Q 013991           62 PFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS-----VNF  135 (432)
Q Consensus        62 ~~~~~~-~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~  135 (432)
                      ...|.+ .+++|.++.+      .++......++..++.++.|+++||+|+|+.+.++.++..++.++....     ++.
T Consensus       236 ~~~p~~~~~~~g~~~~~------~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  309 (406)
T PRK15402        236 ALSPVILISGEQLSSYE------YGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAY  309 (406)
T ss_pred             HHhHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccH
Confidence            344544 5678888887      8888888888889999999999999999999999888777777766553     355


Q ss_pred             HHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcc
Q 013991          136 WMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (432)
Q Consensus       136 ~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (432)
                      +.+++.-++.|++.+...+. ...... .++++|++..+..+....+|..+|+.+++.+.+
T Consensus       310 ~~~~~~~~~~g~g~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~  369 (406)
T PRK15402        310 LWLTAGLSLYAFGIGLANAGLYRLTLF-SSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYL  369 (406)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHhh-hccccccHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            66777788888887776554 444433 345899999999999999999999999999877

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.23  E-value=1.7e-10  Score=110.97  Aligned_cols=176  Identities=11%  Similarity=0.052  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHhhccccchhhhHHHHHHH-hcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHH
Q 013991           43 LFSIWIIVLCTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (432)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~  121 (432)
                      ++...+..++............|.+.++ .|.+..+      .++....+.++..++.++.|+++||+++++....+..+
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~------~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~  326 (438)
T TIGR00712       253 LWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDK------SSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFF  326 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhh------HHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHH
Confidence            3333344444443334455667766554 6888888      89999999999999999999999999754322223222


Q ss_pred             HH---HHHHHHhh--hhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHH-HHHHHHHHhhhc
Q 013991          122 VV---IFNTLFGL--SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIG-LIIGPALGGFLA  194 (432)
Q Consensus       122 ~~---~~~~~~~~--~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g-~~~g~~~~~~l~  194 (432)
                      ..   ++.+.+..  ..+.+...+.-++.|.+....... .....|.+|+++|+++.|+.+....+| ..+||.+.|.+.
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~  406 (438)
T TIGR00712       327 MTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV  406 (438)
T ss_pred             HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHH
Confidence            21   12222212  123333333444455432222222 456789999999999999998877776 578999999999


Q ss_pred             ccCCcCCCcccccccccCccchHHHHHHHHHHHH-HHHHHhhccccc
Q 013991          195 QPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFG-VTIAAFWLPETL  240 (432)
Q Consensus       195 ~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~  240 (432)
                      +       ..|         |...+.+.+...++ .+...+.+||.+
T Consensus       407 ~-------~~g---------~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (438)
T TIGR00712       407 D-------FFG---------WDGGFMVMIGGSILAVILLIVVMIGEK  437 (438)
T ss_pred             H-------hcc---------chHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            8       333         34444554444443 334455666643

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00896 CynX cyanate transporter

Probab=99.23  E-value=3e-10  Score=106.14  Aligned_cols=148  Identities=12%  Similarity=0.037  Sum_probs=110.0

Q ss_pred             hHHHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhcc-CChHHHHHHHH
Q 013991           42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-GRKPVIIMGTA  120 (432)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~  120 (432)
                      .++...+..++...........+|.+.++.|.+..+      .+.+.+...++..+++++.|++.||+ +||+.+.++.+
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~------~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~  271 (355)
T TIGR00896       198 LAWQVTVFFGLQSGLYYSLIGWLPAILISHGASAAT------AGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAV  271 (355)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHH
Confidence            333333333344444445556778787888998888      99999999999999999999999999 56777777877


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHhhhccchhhH-Hhhhhhhcc-cchhhhhhhhHHHHHHHHHHHHHHHHhhhccc
Q 013991          121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFR-EEHQALGLSTVSTAWGIGLIIGPALGGFLAQP  196 (432)
Q Consensus       121 ~~~~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  196 (432)
                      +.+++.+...+.++..... .-++.|++.+...+. .+.+.+..+ +++++...++.+....+|..++|.+.|.+.+.
T Consensus       272 ~~~~~~~~~~~~~~~~~~~-~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~  348 (355)
T TIGR00896       272 LQLVGLCGLLFAPMHGLWA-WALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDI  348 (355)
T ss_pred             HHHHHHHHHHHhhhhHHHH-HHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777666654433222 346778888887775 666665554 56778899998888889999999999999983

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.23  E-value=2.5e-09  Score=104.11  Aligned_cols=153  Identities=12%  Similarity=0.141  Sum_probs=112.4

Q ss_pred             HHHHHHhcCCccccchhhhhhHHHH-HHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHH---hhh-hhHHHHH
Q 013991           65 YFMIKDFQIAKREEDIGSYAGYVGS-SFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLF---GLS-VNFWMAV  139 (432)
Q Consensus        65 ~~~~~~~~~s~~~~~~~~~~~~~~s-~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~-~~~~~l~  139 (432)
                      |++.+++|.+..+      .++... ...++..++.++.|+++||+|+|+.+.++.++.++..+++   +.. ++.+.+.
T Consensus       247 ~~l~~~~G~s~~~------~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~  320 (491)
T PRK11010        247 TFLIRGVGFDAGE------VGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMG  320 (491)
T ss_pred             HHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence            4556778999998      999874 5568999999999999999999998877666555544332   222 3444445


Q ss_pred             HHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCcCCCcccccccccCccchHH
Q 013991          140 LTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLP  218 (432)
Q Consensus       140 ~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~  218 (432)
                      +.-++..++.|...+. .++..+..+++.+++..++.+...++|..+++.+.|.+.+                ..+|...
T Consensus       321 ~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~----------------~~G~~~~  384 (491)
T PRK11010        321 AAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVE----------------AHGWPTF  384 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HhChHHH
Confidence            4555655555544443 8888899999999999999999999999999899999998                3445555


Q ss_pred             HHHHHHHHHHHHHHHhhcccc
Q 013991          219 CLCISLFAFGVTIAAFWLPET  239 (432)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~e~  239 (432)
                      +.+.++++++.++....++++
T Consensus       385 f~~~~~~~l~~l~~~~~~~~~  405 (491)
T PRK11010        385 YLFSVAAAVPGLLLLLVCRQT  405 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc
Confidence            577777777766665555554

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.23  E-value=1.3e-10  Score=105.15  Aligned_cols=159  Identities=13%  Similarity=0.139  Sum_probs=124.8

Q ss_pred             CchhHHHHHHHHHHhhccccchhhhHH-HHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhcc--CChHHH
Q 013991           39 PITELFSIWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY--GRKPVI  115 (432)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~--Grr~~l  115 (432)
                      +.+.++.++++.++.++.+..+.-..| ++.|..|.|..+      .++..+.+-++...+.+++|+++||+  |||.++
T Consensus       250 ~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~------a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~  323 (448)
T COG2271         250 KNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVK------ANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPM  323 (448)
T ss_pred             cChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHH------HHHHHHHHHHHhhHHHHHHHHHHHHhcccccchH
Confidence            445677888899999999999999998 556778899988      99999999999999999999999995  666554


Q ss_pred             -HHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHhhh-ccchhhHHhhhhhhcccchhhhhhhhHHHHHHH-HHHHHHHHH
Q 013991          116 -IMGTASVVIFNTLFGLSV--NFWMAVLTRFLLGSL-NGLLGPIKAYACEIFREEHQALGLSTVSTAWGI-GLIIGPALG  190 (432)
Q Consensus       116 -~~~~~~~~~~~~~~~~~~--~~~~l~~~r~~~G~~-~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~  190 (432)
                       ++.+++..++.+..-+++  |++...++-++.|+. .|....+.....|..|++--|.+.|..+.+..+ |...+....
T Consensus       324 ~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~  403 (448)
T COG2271         324 ALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPL  403 (448)
T ss_pred             HHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcc
Confidence             444555555555555555  457777777888885 333333466778999999999999999988888 888998888


Q ss_pred             hhhcccCCcCCCcccccccc
Q 013991          191 GFLAQPAEKYPNLFSSESLF  210 (432)
Q Consensus       191 ~~l~~~~~~~~~~~gw~~~~  210 (432)
                      +++.+       .+||.+.|
T Consensus       404 g~i~d-------~~gW~g~F  416 (448)
T COG2271         404 GYIAD-------TWGWDGGF  416 (448)
T ss_pred             eeeEe-------cCCCcchH
Confidence            88888       46666655

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.22  E-value=6.2e-10  Score=105.37  Aligned_cols=125  Identities=11%  Similarity=0.004  Sum_probs=98.7

Q ss_pred             HHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 013991           64 LYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRF  143 (432)
Q Consensus        64 ~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~  143 (432)
                      .|.+.+++|.+..+      .+.+...+.++..++.++.|++.||.+++..+....+......++....++.+.+.+..+
T Consensus       240 ~p~~~~~~g~s~~~------~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  313 (394)
T PRK10213        240 RPVYMNLAGFGVDG------LTLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGVAI  313 (394)
T ss_pred             HHHHHHhcCCChhH------HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            36777888999888      999999999999999999999999965443344333334444455556667788888888


Q ss_pred             HHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcc
Q 013991          144 LLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (432)
Q Consensus       144 ~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (432)
                      +.|++.+...+. .+++.+..| +++++..+......++|..+||.++|.+.+
T Consensus       314 l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~  365 (394)
T PRK10213        314 IWGLTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALD  365 (394)
T ss_pred             HHHHHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999988877776 778888876 556777788888889999999999999998

>PRK10054 putative transporter; Provisional

Probab=99.22  E-value=1.4e-10  Score=109.91  Aligned_cols=111  Identities=16%  Similarity=0.033  Sum_probs=94.7

Q ss_pred             hhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHhhhccchhhH-Hhhhhh
Q 013991           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS-VNFWMAVLTRFLLGSLNGLLGPI-KAYACE  161 (432)
Q Consensus        84 ~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~  161 (432)
                      .++..+...+......++.|++.||+++|+.+..+.++..++.....++ ++.+.+.+..++.|++.+...|. .+++.+
T Consensus       246 ~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~  325 (395)
T PRK10054        246 VAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLIDH  325 (395)
T ss_pred             HHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            7788888888778888899999999999999999988888888777664 56777777888999988877776 889999


Q ss_pred             hcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcc
Q 013991          162 IFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (432)
Q Consensus       162 ~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (432)
                      ..|++.|++..+..+ ...+|..+||.++|.+.+
T Consensus       326 ~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~  358 (395)
T PRK10054        326 IAPPGMKASYFSAQS-LGWLGAAINPLVSGVILT  358 (395)
T ss_pred             hCCcccceehHhHHH-HHHHHHHHHHHHHHHHHH
Confidence            999999999988655 555899999999999998

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.21  E-value=1.9e-10  Score=110.76  Aligned_cols=176  Identities=15%  Similarity=0.225  Sum_probs=148.5

Q ss_pred             hhHHHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccC--ChHHHHHH
Q 013991           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYG--RKPVIIMG  118 (432)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G--rr~~l~~~  118 (432)
                      +.++.+.+...+..++.......+|.+.++.+.++.+      .+.+.++..+...++.+..|+++|+..  ++.+..++
T Consensus       298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~------aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~  371 (509)
T KOG2504|consen  298 PKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSND------AAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLT  371 (509)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhh------hHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHH
Confidence            4455667777778888888888889999999999999      999999999999999999999999988  45667888


Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccC
Q 013991          119 TASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (432)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  197 (432)
                      +++.+++.+.+.++++++.++..-++.|++.|.+... ...+.|..+.++-..+.|+.....+++..+||+++|.+.+.+
T Consensus       372 ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~t  451 (509)
T KOG2504|consen  372 LLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDIT  451 (509)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeecc
Confidence            8888999999999999999999999999999998887 668999999999999999999999999999999999998854


Q ss_pred             CcCCCcccccccccCccchHHHHHHHHHHHHHHHHHhhcc
Q 013991          198 EKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLP  237 (432)
Q Consensus       198 ~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (432)
                      ++               |...++.+++..++....++..+
T Consensus       452 g~---------------Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  452 GN---------------YDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             CC---------------eeeehhhcChHHHHHHHHHHHhH
Confidence            43               33334556655555555555555

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.19  E-value=7.1e-10  Score=106.47  Aligned_cols=135  Identities=13%  Similarity=0.073  Sum_probs=87.7

Q ss_pred             hccccchhhhHHHHH-HHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHh--
Q 013991           54 ALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFG--  130 (432)
Q Consensus        54 ~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~--  130 (432)
                      ..........+|.+. +++|.+..+      .+...+...++..+++++.|+++||+|||+.+.++.++..+......  
T Consensus       256 ~~~~~~~~~~lp~~l~~~~g~s~~~------~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~  329 (432)
T PRK10406        256 SLCFYTFTTYMQKYLVNTAGMHANV------ASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSA  329 (432)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHH
Confidence            333444556677554 568888877      88888888888889999999999999999988776655443332221  


Q ss_pred             h--hhhHHHHHHHHHHHhhhccchhh-HHhhhhhhcccchhhhhhhhHHHHHHH-HHHHHHHHHhhhc
Q 013991          131 L--SVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGI-GLIIGPALGGFLA  194 (432)
Q Consensus       131 ~--~~~~~~l~~~r~~~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~  194 (432)
                      .  .++....+..-.+.+.+.+...+ ...+++|.+|++.|+.++|+.+...++ .....|.+.+.+.
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~  397 (432)
T PRK10406        330 LQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLK  397 (432)
T ss_pred             HHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHH
Confidence            1  12222222211222223333333 377889999999999999998765443 3445777777553

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.17  E-value=5.3e-10  Score=101.27  Aligned_cols=177  Identities=14%  Similarity=0.159  Sum_probs=135.5

Q ss_pred             hHHHHHHHHHHhhccccchhhhHHHHH-HHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHH
Q 013991           42 ELFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (432)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~  120 (432)
                      .+....++.++..-+.+.+......+. .++|++..+      ..++.....+..+++++++|++.||+|.|+++.++.+
T Consensus       253 ~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~------lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lv  326 (438)
T COG2270         253 NLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTE------LLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLV  326 (438)
T ss_pred             chHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHH
Confidence            344444444444444444444444454 599999999      9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCc
Q 013991          121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK  199 (432)
Q Consensus       121 ~~~~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~  199 (432)
                      +..+.++...+...-..+.+.-.+.|...|..+.. .++..+..|+++-++.+|+++.....+..+||.+-+.+.+.+++
T Consensus       327 i~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~  406 (438)
T COG2270         327 ILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGS  406 (438)
T ss_pred             HHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcc
Confidence            99888877766665556666677889988887775 99999999999999999999999999999999999999985433


Q ss_pred             CCCcccccccccCccchHHHHHHHHHHHHHHHHHhhcccc
Q 013991          200 YPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPET  239 (432)
Q Consensus       200 ~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  239 (432)
                                     -|..+....++..+.++.+..+|+.
T Consensus       407 ---------------~r~g~~~i~vll~iGl~~L~~v~~~  431 (438)
T COG2270         407 ---------------SRAGVLSIIVLLLIGLLLLLRVKVP  431 (438)
T ss_pred             ---------------hhhHHHHHHHHHHhhHhhEEeecCC
Confidence                           2333344444444555555666654

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.17  E-value=7.3e-10  Score=104.06  Aligned_cols=183  Identities=16%  Similarity=0.280  Sum_probs=136.2

Q ss_pred             hhHHHHHHHHHHhhccccchhhhHHHHHHHhc-CCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHH
Q 013991           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQ-IAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (432)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~  119 (432)
                      +++....+..++.......+....+.+.++.| .+...      .+.+.+...++=++.-...+++..|+|.|+++.++.
T Consensus       207 ~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~------~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~  280 (400)
T PF03825_consen  207 PRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGST------IGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLAL  280 (400)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhH------HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            44555555666677777777778888888888 56666      787777878888888889999999999999999999


Q ss_pred             HHHHHHHHHHhhh-hhHHHHH----HHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHH-HHHHHHHHHHHHHhh
Q 013991          120 ASVVIFNTLFGLS-VNFWMAV----LTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVST-AWGIGLIIGPALGGF  192 (432)
Q Consensus       120 ~~~~~~~~~~~~~-~~~~~l~----~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~-~~~~g~~~g~~~~~~  192 (432)
                      +..++=..+++.. ++.+...    +...+.|+.-+...++ ..++.+..|++.|+++.++++. ..++|..+|..++|+
T Consensus       281 ~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~  360 (400)
T PF03825_consen  281 VAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGW  360 (400)
T ss_pred             HHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            9999988888887 4444433    3345689988887775 9999999999999999999865 568999999999999


Q ss_pred             hcccCCcCCCcccccccccCccchHHHHHHHHHHHHHH-HHHhhcccc
Q 013991          193 LAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPET  239 (432)
Q Consensus       193 l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~  239 (432)
                      +.+       .+|-+..+   .|...+.+.+++.++.. +..++.||+
T Consensus       361 l~~-------~~g~~~~~---~~~~~~~v~a~~~~~~~~~f~~~fk~~  398 (400)
T PF03825_consen  361 LYD-------AFGARGMF---DWSAVFLVFAVMALVILVLFVILFKPK  398 (400)
T ss_pred             HHH-------Hhcchhhh---hHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence            998       55544443   23334445555444433 333444543

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.15  E-value=5.1e-10  Score=106.22  Aligned_cols=129  Identities=12%  Similarity=0.059  Sum_probs=104.7

Q ss_pred             hhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhh-ccCChHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 013991           61 FPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD-RYGRKPVIIMGTASVVIFNTLFGLSVNFWMAV  139 (432)
Q Consensus        61 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~d-r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~  139 (432)
                      ....|.+.++.+.++.+      .+++.+...++......+.+++.| |++.|+.+..+.++.+++.++.+.+++++.+.
T Consensus       228 ~~~~p~~~~~~~~~~~~------~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  301 (400)
T PRK11646        228 MLMLPIMVNDIAGSPSA------VKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLF  301 (400)
T ss_pred             HHhhhhhHHhhcCCchH------HHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            34567777776656666      888888877777666666677665 46667777888888888888888888888777


Q ss_pred             HHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcc
Q 013991          140 LTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (432)
Q Consensus       140 ~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (432)
                      +..++.|++.+...|. .+++.|..|+++|++.+++.+....+|..+||.++|++.+
T Consensus       302 ~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~  358 (400)
T PRK11646        302 TLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFD  358 (400)
T ss_pred             HHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHH
Confidence            7778888887777665 8899999999999999999999999999999999999998

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.14  E-value=1.3e-09  Score=102.81  Aligned_cols=123  Identities=14%  Similarity=0.126  Sum_probs=91.6

Q ss_pred             HHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHH
Q 013991           65 YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGL-SVNFWMAVLTRF  143 (432)
Q Consensus        65 ~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~-~~~~~~l~~~r~  143 (432)
                      |++.+.+|.++.+      .+++.+...++..++.++.|++.||+|+|+.+..+..+..++.++... .++.+...+..+
T Consensus       224 ~~~~~~~g~s~~~------~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  297 (382)
T PRK10091        224 PYMMFISGFSETS------MTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAF  297 (382)
T ss_pred             HHHHHhcCCCHHH------HHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            4556668999888      999999999999999999999999999999999888888777765543 445555556666


Q ss_pred             HHhhhccch-hhHH-hhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcc
Q 013991          144 LLGSLNGLL-GPIK-AYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (432)
Q Consensus       144 ~~G~~~g~~-~~~~-~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (432)
                      +.+++.... .+.. ....+..+++.++...  .+....+|..+||.++|++.+
T Consensus       298 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~Gp~~~G~l~~  349 (382)
T PRK10091        298 ICCAGLFALSAPLQILLLQNAKGGELLGAAG--GQIAFNLGSAIGAYCGGMMLT  349 (382)
T ss_pred             HHHHHHHhhhHHHHHHHHHhCCcchHHHHHH--HHHHHHHHHHHHHHHhHHHHH
Confidence            666653333 3333 3444544555555543  466788999999999999987

>TIGR01272 gluP glucose/galactose transporter

Probab=99.12  E-value=1.5e-09  Score=98.91  Aligned_cols=146  Identities=16%  Similarity=0.112  Sum_probs=107.5

Q ss_pred             hhHHHHHHHHHHhhccccchhhhHHHHHHH---hcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHH
Q 013991           41 TELFSIWIIVLCTALPISSLFPFLYFMIKD---FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM  117 (432)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~  117 (432)
                      +.+....+..++............+.+.++   +|.++.+      .+...+.+..+..++.+..+++.||+|+|+++.+
T Consensus       140 ~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~------a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~  213 (310)
T TIGR01272       140 THLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQ------AAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAF  213 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence            344444444554444455556666666543   5888888      9999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcc
Q 013991          118 GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (432)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (432)
                      +.++..++.++....++...+ .+-++.|++.+...|. .+...+..|++ .+++.++. ....+|..++|.+.|.+.+
T Consensus       214 ~~~l~~~~~~l~~~~~~~~~~-~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad  289 (310)
T TIGR01272       214 NAFLAVLLSIGAALTHGYVAM-WFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLAD  289 (310)
T ss_pred             HHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHH
Confidence            888888777666555443332 3445778888887776 77887777753 45566665 5666899999999999998

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.11  E-value=8.9e-10  Score=104.76  Aligned_cols=149  Identities=14%  Similarity=0.157  Sum_probs=100.2

Q ss_pred             HHHHHHhcCCccccchhhhhhHHHHHHh-HHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHH---hhh-hhHHHHH
Q 013991           65 YFMIKDFQIAKREEDIGSYAGYVGSSFM-FGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLF---GLS-VNFWMAV  139 (432)
Q Consensus        65 ~~~~~~~~~s~~~~~~~~~~~~~~s~~~-~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~-~~~~~l~  139 (432)
                      +.+.+++|.++++      .+++.+... ++..++.++.|++.||+|||+.+.++.++..+..+..   +.. ++.+.++
T Consensus       234 ~~l~~~~G~~~~~------~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~  307 (402)
T PRK11902        234 TFLIRGAGFSAGE------VGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMA  307 (402)
T ss_pred             HHHHHhcCCCHHH------HHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence            4566778999888      898886654 5688999999999999999998887777666554433   333 3555555


Q ss_pred             HHHH----HHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCcCCCcccccccccCcc
Q 013991          140 LTRF----LLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFP  214 (432)
Q Consensus       140 ~~r~----~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~  214 (432)
                      +.-+    ..|++.+...+. ..++.+.+|.+++    ++.+...++|...++.++|.+.+                ..+
T Consensus       308 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G~l~~----------------~~G  367 (402)
T PRK11902        308 LAIGIENLCGGMGTAAFVALLMALCNRSFSATQY----ALLSALASVGRVYVGPTSGYLVE----------------AYG  367 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHHHH----------------HhC
Confidence            5443    344444444554 6777777776654    44555567777767778999998                445


Q ss_pred             chHHHHHHHHHHHHHHHHHhhcccc
Q 013991          215 YFLPCLCISLFAFGVTIAAFWLPET  239 (432)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~e~  239 (432)
                      |+..+...++++++.++.....+.+
T Consensus       368 ~~~~f~~~~~~~~~~~~~~~~~~~~  392 (402)
T PRK11902        368 WPGFYLMTVVIALPGLALLWLMRGT  392 (402)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            5555577777666655554444433

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=99.11  E-value=6.1e-09  Score=90.11  Aligned_cols=132  Identities=14%  Similarity=0.197  Sum_probs=107.0

Q ss_pred             cccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHhhh---
Q 013991           56 PISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS---  132 (432)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---  132 (432)
                      ..+.+...-|.+.+.+|.|.+|      ...+.++..+|..+ .++.|.+.||+|.+.++.+|.+...++..+...+   
T Consensus        17 t~Y~Fs~yS~~Lk~~l~~sq~~------l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~   89 (250)
T PF06813_consen   17 TTYTFSAYSPQLKSRLGYSQSQ------LNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSG   89 (250)
T ss_pred             cccchhhhhHHHHHHhCCCHHH------HHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            4556667778999999999999      99999999999876 5899999999999999999999999998877653   


Q ss_pred             ----hhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcc
Q 013991          133 ----VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (432)
Q Consensus       133 ----~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (432)
                          .++|.+.+..++.|.+.+....+ .....+.+| ++||++.|+.-...++++.+-..+...+.+
T Consensus        90 ~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~  156 (250)
T PF06813_consen   90 RIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFG  156 (250)
T ss_pred             ccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcC
Confidence                36788887777777776665554 555567787 589999999999999988777666655554

>TIGR00901 2A0125 AmpG-related permease

Probab=99.10  E-value=2.9e-10  Score=106.28  Aligned_cols=132  Identities=15%  Similarity=0.128  Sum_probs=102.5

Q ss_pred             HHHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHh-HHHHHHHHhhhhhhhccCChHHHHHHHHH
Q 013991           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFM-FGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (432)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~-~~~~~~~~~~G~l~dr~Grr~~l~~~~~~  121 (432)
                      ++.+.+..++............|.+.+++|.+.++      .+.+.++.. ++..++.+++|++.||+|||+.+..+.++
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~------~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~  284 (356)
T TIGR00901       211 ALLLLLLIVLYKLGDSAATVLTTLFLLDMGFSKEE------IALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIV  284 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            44344444444455555666777777779998888      888887665 57789999999999999999999888888


Q ss_pred             HHHHHHHHhhh-----------hhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHH
Q 013991          122 VVIFNTLFGLS-----------VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWG  180 (432)
Q Consensus       122 ~~~~~~~~~~~-----------~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~  180 (432)
                      ..++..+..+.           ++.+.+..+.++.+++.+...+. .+++.|.+|+++|++.+++.+...+
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       285 QALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            87776655443           35577788888899998887776 9999999999999999999877654

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.10  E-value=4.1e-09  Score=90.01  Aligned_cols=147  Identities=18%  Similarity=0.238  Sum_probs=109.8

Q ss_pred             HHHHHHHHHHhhccccchhhhHH-HHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHH
Q 013991           43 LFSIWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (432)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~  121 (432)
                      ++.+.+..++......-....-| .+++.+|.|..+      .+.+.+.......+.+++.|.++||+|++-..+.+..+
T Consensus       266 fw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~------a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~  339 (459)
T KOG4686|consen  266 FWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVS------AGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACI  339 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhh------ccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHH
Confidence            44444444444333322223333 567899999998      88899988888899999999999999999776665444


Q ss_pred             -HHHHHHHHhhhhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccC
Q 013991          122 -VVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (432)
Q Consensus       122 -~~~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  197 (432)
                       ..++-....+  +++.=+++..+.|+........ ...++.+.|+++-|++.|..+...++|..+-|+++|++.+..
T Consensus       340 ~tl~~H~~l~F--t~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~  415 (459)
T KOG4686|consen  340 LTLLGHSGLFF--TFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGD  415 (459)
T ss_pred             HHHHHhhhHHh--hhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCC
Confidence             3444333333  3344456667888887777775 889999999999999999999999999999999999999843

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.10  E-value=7.1e-10  Score=98.10  Aligned_cols=126  Identities=21%  Similarity=0.291  Sum_probs=96.7

Q ss_pred             hHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHhhhhhH----HHHHHHHHHHhhhccchhhHHhhhhhhcccch
Q 013991           92 MFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF----WMAVLTRFLLGSLNGLLGPIKAYACEIFREEH  167 (432)
Q Consensus        92 ~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~----~~l~~~r~~~G~~~g~~~~~~~~i~~~~~~~~  167 (432)
                      .+.-.-|.++.+++.||+|||+.|..+.++++++.++...+.+-    ..++.+|++.   .|++.+++.|..|++|.+.
T Consensus       391 slaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafi---sg~fqvaYvYtPEVyPTav  467 (528)
T KOG0253|consen  391 SLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFI---SGAFQVAYVYTPEVYPTAV  467 (528)
T ss_pred             HHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHH---hchheEEEEecCcccchhh
Confidence            34456788999999999999999999999999998887765432    3445566544   4556667999999999999


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHhhhcccCCcCCCcccccccccCccchHHHHHHHHHHHHHHHHHhhccc
Q 013991          168 QALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPE  238 (432)
Q Consensus       168 r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  238 (432)
                      |+.+.|..+.+..+|+++.|.++ ...+                 -+-..+..+...+.++..+...++|-
T Consensus       468 RatgvGtcSsmaRIggI~~p~iA-~~~e-----------------~s~sl~i~vy~~~~ilagIavcffPi  520 (528)
T KOG0253|consen  468 RATGVGTCSSMARIGGIFSPVIA-MRAE-----------------LSTSLPIFVYGALFILAGIAVCFFPI  520 (528)
T ss_pred             hhcchhhhhhHHhhhhhhhhHHH-HHhc-----------------cceeehHHHHHHHHHHHHHHheeeee
Confidence            99999999999999999999999 3322                 22334456666666666667777773

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.09  E-value=2.3e-09  Score=104.01  Aligned_cols=176  Identities=15%  Similarity=0.131  Sum_probs=110.0

Q ss_pred             hhHHHHHHHHHHhhccccchhhhHHHH-HHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHH----
Q 013991           41 TELFSIWIIVLCTALPISSLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVI----  115 (432)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l----  115 (432)
                      +.++...+..+............+|.+ .+++|.+..+      .+++.+...++..++.++.|+++||+++|+..    
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~------~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~  334 (465)
T TIGR00894       261 LPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKE------NGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTA  334 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHH------hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHH
Confidence            345555666666666666666777855 4568999888      99999999999999999999999998754221    


Q ss_pred             ----HHHHHHHHHHHHH--Hhh-hhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHH
Q 013991          116 ----IMGTASVVIFNTL--FGL-SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGP  187 (432)
Q Consensus       116 ----~~~~~~~~~~~~~--~~~-~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~  187 (432)
                          ..+......+..+  ... ..+....++.-.+.+.+.+...+. .....|..|+ .+|...++.+....+|..++|
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p  413 (465)
T TIGR00894       335 ARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIAS  413 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHH
Confidence                1111111111111  111 223333333434444444433333 4455566654 899999999999999999999


Q ss_pred             HHHhhhcccCCcCCCcccccccccCccchHHHHHHHHHHHHHHHHHhhc
Q 013991          188 ALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL  236 (432)
Q Consensus       188 ~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (432)
                      .+.+.+.+.       .+      ...|...+.+.++..++..+.....
T Consensus       414 ~l~g~~~~~-------~~------~~~~~~~f~~~~~~~~i~~i~~~~~  449 (465)
T TIGR00894       414 TLAGNILSQ-------DS------KNVWLIVFLIMAFVNILCVIFYLIF  449 (465)
T ss_pred             HhhheeeCC-------CC------chHHHHHHHHHHHHHHHHHHHeeee
Confidence            999988761       11      1235666666666666554444433

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=99.08  E-value=6.5e-09  Score=94.92  Aligned_cols=147  Identities=22%  Similarity=0.329  Sum_probs=108.6

Q ss_pred             hhHHHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhc----cCChHHHH
Q 013991           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR----YGRKPVII  116 (432)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr----~Grr~~l~  116 (432)
                      +.++.+....+..-++...-..+.+++.+++|++..-      .+.+--+..+...+.+|+.|..+||    |||||.++
T Consensus        32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~lGvphk~------~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI  105 (498)
T KOG0637|consen   32 RKLISVASIAAGVQFGWALELSYLTPYLQSLGVPHKW------SSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFI  105 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHHHHcCCCccc------ccccccccccccceecccccccccccccccccccchH
Confidence            4555555555555666666667778888999999887      7777788888888999999999995    89877665


Q ss_pred             H-HHHHHHHHHHHHhhhhhHH-----------------HHHHHHHHHhhhc-cchhhHHhhhhhhcccchhhh-hhhhHH
Q 013991          117 M-GTASVVIFNTLFGLSVNFW-----------------MAVLTRFLLGSLN-GLLGPIKAYACEIFREEHQAL-GLSTVS  176 (432)
Q Consensus       117 ~-~~~~~~~~~~~~~~~~~~~-----------------~l~~~r~~~G~~~-g~~~~~~~~i~~~~~~~~r~~-~~~~~~  176 (432)
                      . +.....++.++.+++.++.                 .++++-.+.-++. -...|+.+++.|....+++.+ +++.+.
T Consensus       106 ~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~  185 (498)
T KOG0637|consen  106 LAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFS  185 (498)
T ss_pred             HHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHH
Confidence            4 4566677777777765442                 2333333444443 345678999999998777777 999999


Q ss_pred             HHHHHHHHHHHHHHhhh
Q 013991          177 TAWGIGLIIGPALGGFL  193 (432)
Q Consensus       177 ~~~~~g~~~g~~~~~~l  193 (432)
                      .+.++|..+|..+++++
T Consensus       186 ~f~avGnvLGY~~g~y~  202 (498)
T KOG0637|consen  186 FFMAVGNVLGYALGSYL  202 (498)
T ss_pred             HHHHhcceeeeeccccc
Confidence            99999999998888743

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.08  E-value=1.2e-09  Score=98.89  Aligned_cols=146  Identities=18%  Similarity=0.224  Sum_probs=113.9

Q ss_pred             chhHHHHHHHHHHhhccccchhhhHH-HHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHH
Q 013991           40 ITELFSIWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (432)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~  118 (432)
                      .++.+.+.+.++.+.-+.-.++..+| ++.++|+.++.+      .|...+.+.+...+..+..|+++||+|.+|++.+.
T Consensus       217 ~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~------Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~  290 (417)
T COG2223         217 NKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVT------AGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAV  290 (417)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhh------HHHHHHHHHHHHHHHHhccchhhhhccchhHHHHH
Confidence            45566666666666666666677777 667889999999      99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhh-------hHH----HHHHHHHHHhhhccchhhHHhhhhhhcccchhhhhhhhHHHHHHHHHHHHH
Q 013991          119 TASVVIFNTLFGLSV-------NFW----MAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGP  187 (432)
Q Consensus       119 ~~~~~~~~~~~~~~~-------~~~----~l~~~r~~~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~  187 (432)
                      ...++++..+.....       +..    .++...++.|+|.|.   +..++..++|+ +-|.+.|+.+...++|..+-|
T Consensus       291 f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGs---vfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp  366 (417)
T COG2223         291 FVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGS---VFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLP  366 (417)
T ss_pred             HHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcch---heeechHHHHh-hhhHHHHHHHHhccccccchh
Confidence            888888887776653       333    344455556666554   35566666654 678899999999999999999


Q ss_pred             HHHhhhcc
Q 013991          188 ALGGFLAQ  195 (432)
Q Consensus       188 ~~~~~l~~  195 (432)
                      ..-+...+
T Consensus       367 ~~~g~~~~  374 (417)
T COG2223         367 LAFGVSLD  374 (417)
T ss_pred             HHHHHHHH
Confidence            88888887

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.07  E-value=4.5e-09  Score=100.76  Aligned_cols=151  Identities=18%  Similarity=0.197  Sum_probs=126.1

Q ss_pred             chhHHHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHH
Q 013991           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (432)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~  119 (432)
                      .|.+..+....++............+++.++.--+++.      .+.+..+..++..++.+++++++||+|+|+.+..+.
T Consensus       224 nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~------~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~  297 (428)
T PF13347_consen  224 NRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNEGL------ISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGL  297 (428)
T ss_pred             cchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCchh------hHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhH
Confidence            35566667777777777777777777777664334455      788888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhh--hHHHHHHHHHHHhhhccchhhH-Hhhhhhhccc-------chhhhhhhhHHHHHHHHHHHHHHH
Q 013991          120 ASVVIFNTLFGLSV--NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFRE-------EHQALGLSTVSTAWGIGLIIGPAL  189 (432)
Q Consensus       120 ~~~~~~~~~~~~~~--~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~-------~~r~~~~~~~~~~~~~g~~~g~~~  189 (432)
                      ++.+++.++..+.+  +.+.+++.-++.|++.+...+. .++++|..+.       ++.|...+..+....+|..+++.+
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i  377 (428)
T PF13347_consen  298 LLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAI  377 (428)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHH
Confidence            99999999888876  8999999999999998887776 8899998873       345888999999999999999999


Q ss_pred             Hhhhccc
Q 013991          190 GGFLAQP  196 (432)
Q Consensus       190 ~~~l~~~  196 (432)
                      .+.+.+.
T Consensus       378 ~g~~l~~  384 (428)
T PF13347_consen  378 VGLLLAL  384 (428)
T ss_pred             HHHHHHH
Confidence            9988873

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.07  E-value=1.3e-09  Score=106.37  Aligned_cols=147  Identities=16%  Similarity=0.112  Sum_probs=116.8

Q ss_pred             HHHHHHHHHHhhccccchhhhHHHHH-HHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHH
Q 013991           43 LFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (432)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~  121 (432)
                      +....+..++..+........+|.+. +.+|.+..+      .++......++..++.++.|++.||+|||+.+.++..+
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~  330 (485)
T TIGR00711       257 FTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQ------AGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLIL  330 (485)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHH
Confidence            33334444444444444455667555 457999888      99999999999999999999999999999999999988


Q ss_pred             HHHHHHHHhh----hhhHHHHHHHHHHHhhhccchhh-HHhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcc
Q 013991          122 VVIFNTLFGL----SVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (432)
Q Consensus       122 ~~~~~~~~~~----~~~~~~l~~~r~~~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (432)
                      .+++..+..+    ..+.+.+....++.|++.+...+ ......+..|+++|+++.++.+....+|..+|+.+.+.+.+
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~  409 (485)
T TIGR00711       331 YAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILT  409 (485)
T ss_pred             HHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888877662    23566677778889998877654 47777788999999999999999999999999999988875

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.05  E-value=3.2e-09  Score=114.72  Aligned_cols=131  Identities=14%  Similarity=0.114  Sum_probs=113.1

Q ss_pred             chhhhHH-HHHHHhcCCcc-ccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHhhhhhHH
Q 013991           59 SLFPFLY-FMIKDFQIAKR-EEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFW  136 (432)
Q Consensus        59 ~~~~~~~-~~~~~~~~s~~-~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~  136 (432)
                      .....+| ++.+++|.+.. +      .+++.+...++.+++.++.|+++||+++|+++.++.++.+++.++..+..+.+
T Consensus       250 ~~~~~~~~~~~~~~g~s~~~~------~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (1146)
T PRK08633        250 LAQANFPAYAKEVLGLDNTFQ------VQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLA  323 (1146)
T ss_pred             HHHHhhHHHHHHHhCCCcHHH------HHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHH
Confidence            3344455 44567899888 7      89999999999999999999999999999999999888888888888888888


Q ss_pred             HHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcc
Q 013991          137 MAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (432)
Q Consensus       137 ~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (432)
                      .+++..++.|++.+...+. .+++.+..|+++|++++++.+....+|.++++.+++.+..
T Consensus       324 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~  383 (1146)
T PRK08633        324 SVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG  383 (1146)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888889999988877665 8999999999999999999999999999888888877653

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.04  E-value=3.4e-09  Score=101.01  Aligned_cols=147  Identities=12%  Similarity=0.132  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHhhccccchhhhHHHHHHHh--cCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHH-HHHHH
Q 013991           43 LFSIWIIVLCTALPISSLFPFLYFMIKDF--QIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPV-IIMGT  119 (432)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~-l~~~~  119 (432)
                      ++...+..++.......+...+|.+.+++  +.+..+      .+...+...++..++.++.|+++||++||+. +....
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~------~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~  317 (412)
T TIGR02332       244 IMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIM------IGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPY  317 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH------hHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHH
Confidence            33444445555555666777888888775  456666      8889999999999999999999999997774 34444


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcc
Q 013991          120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (432)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (432)
                      ++..++..+....++....+.+-.+.+++.....+. .....|.+|+++|++++|+.+....+|.+++|.+.+.+.+
T Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~  394 (412)
T TIGR02332       318 LFAAAGWLLASATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKD  394 (412)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccc
Confidence            344433322222222222111112222222222233 4555778999999999999999999999999999999988

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.04  E-value=3.9e-09  Score=100.10  Aligned_cols=120  Identities=12%  Similarity=0.054  Sum_probs=84.9

Q ss_pred             HHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 013991           66 FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLL  145 (432)
Q Consensus        66 ~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~  145 (432)
                      .+.+++|.++.+      .+.+.+...++..++.++.|++.||+|||+.+.++..+..++.++..+.++.+..+..-.+.
T Consensus       229 ~~~~~~g~~~~~------~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  302 (392)
T PRK10473        229 LLMEQMGFSRGE------YAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLI  302 (392)
T ss_pred             HHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345678988888      89999999999999999999999999999999999998888888877766555444433343


Q ss_pred             hhhccchhhHHhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcc
Q 013991          146 GSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (432)
Q Consensus       146 G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (432)
                      +.+.+...+ .....+..|.++|+   +..+...+++..+|+.+++++.+
T Consensus       303 ~~g~~~~~~-~~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~  348 (392)
T PRK10473        303 CAGFSVGFG-VAMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAA  348 (392)
T ss_pred             HHHHHHHhH-HHHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHH
Confidence            333322222 22334444555553   44455566777788888888876

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.04  E-value=4.5e-09  Score=97.21  Aligned_cols=142  Identities=25%  Similarity=0.278  Sum_probs=117.3

Q ss_pred             hhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhccchhhH-Hhhhhhh
Q 013991           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEI  162 (432)
Q Consensus        84 ~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~  162 (432)
                      .|.+.+...+.-++.-.+..++.+|+|.|+.++++.++.++=.++++++++.+.+.+.+.+.|+-.+..... ..|+++.
T Consensus       261 ~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~  340 (412)
T PF01306_consen  261 YGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAH  340 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999999999987777665 9999999


Q ss_pred             cccchhhhhhhhH-HHHHHHHHHHHHHHHhhhcccCCcCCCcccccccccCccchHHHHHHHHHHHH-HHHHHhhccccc
Q 013991          163 FREEHQALGLSTV-STAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFG-VTIAAFWLPETL  240 (432)
Q Consensus       163 ~~~~~r~~~~~~~-~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~  240 (432)
                      +|+|..++...+. +.+.++|..+.+.++|.+.|                +.|++..+.+.+.+.++ .++..+.+++++
T Consensus       341 fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd----------------~~G~~~tylimg~iv~~~~li~~f~l~~~~  404 (412)
T PF01306_consen  341 FDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYD----------------RIGFQHTYLIMGLIVLPFTLISAFTLKKDK  404 (412)
T ss_dssp             S-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHS--SS
T ss_pred             CCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHh----------------hcCcHHHHHHHHHHHHHHHHHheeeecCCC
Confidence            9999888888775 78899999999999999999                56666666777666655 444556665544


Q ss_pred             C
Q 013991          241 H  241 (432)
Q Consensus       241 ~  241 (432)
                      +
T Consensus       405 ~  405 (412)
T PF01306_consen  405 K  405 (412)
T ss_dssp             S
T ss_pred             c
Confidence            3

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.03  E-value=3.2e-09  Score=103.67  Aligned_cols=143  Identities=17%  Similarity=0.138  Sum_probs=113.9

Q ss_pred             HHHHHHhhccccchhhhHHH-HHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHH
Q 013991           47 WIIVLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF  125 (432)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~  125 (432)
                      .+..+.............|. +++.+|.++.+      .|+......++..++.++.|++.||+|+|+.+..+.++..++
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~------ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~  338 (495)
T PRK14995        265 VVMAMTAMITLVGFELLMAQELQFVHGLSPLE------AGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALS  338 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHH
Confidence            33344443333344455564 45568999998      999999999999999999999999999999999888888777


Q ss_pred             HHHHhh---hhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcc
Q 013991          126 NTLFGL---SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (432)
Q Consensus       126 ~~~~~~---~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (432)
                      .++...   .++.+......++.|++.|...+. ...+.+..|+++++.+.++.+....+|..+|+.+.+.+.+
T Consensus       339 ~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        339 FYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             HHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            765543   245566677788899998877664 7788888999999999999999999999999999988765

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.03  E-value=9e-10  Score=102.60  Aligned_cols=135  Identities=21%  Similarity=0.254  Sum_probs=109.9

Q ss_pred             HHHHHHhhccccchhhhHHHH-HHHhcCC-ccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHH
Q 013991           47 WIIVLCTALPISSLFPFLYFM-IKDFQIA-KREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (432)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~s-~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~  124 (432)
                      ....+.............|.+ .+++|.+ ..+      .+...+...+...++.++.|++.||+|+|+...+......+
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  285 (352)
T PF07690_consen  212 LIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQ------AGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLIL  285 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHH------HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHhhcccchhhhhccCCCHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence            333444444444567777776 7889999 667      89999999999999999999999999998888888777777


Q ss_pred             HHHHHhhhh---hHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHH
Q 013991          125 FNTLFGLSV---NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGP  187 (432)
Q Consensus       125 ~~~~~~~~~---~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~  187 (432)
                      ..+......   +....++.-++.|++.+...+. .+++.|..|+++|+++.++.+...++|..+||
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  286 GALGLLLLPFSSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            777665543   4466777778899988877776 99999999999999999999999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.02  E-value=5.1e-09  Score=98.93  Aligned_cols=123  Identities=19%  Similarity=0.251  Sum_probs=92.7

Q ss_pred             hhhHHHH-HHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHhhh-----hh
Q 013991           61 FPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS-----VN  134 (432)
Q Consensus        61 ~~~~~~~-~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~  134 (432)
                      ....|.+ .+++|.++.+      .+++.+...++..++.++.|++.||+|||+.+..+..+..++.+++...     ++
T Consensus       226 ~~~~~~~~~~~~g~~~~~------~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (385)
T TIGR00710       226 FSGAPFVYIDIMGVSPSV------FGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGS  299 (385)
T ss_pred             HHcChHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence            3344544 4578988888      9999999999999999999999999999999988888777777666543     23


Q ss_pred             HHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHH-HHHHHHHHHH
Q 013991          135 FWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWG-IGLIIGPALG  190 (432)
Q Consensus       135 ~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~-~g~~~g~~~~  190 (432)
                      ...+++..++.|++.+...+. .....|..| ++|+++.++.+.... .|.+.+|.++
T Consensus       300 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~  356 (385)
T TIGR00710       300 WAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS  356 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555667788877776665 777788776 679999999876654 4566666555

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK09848 glucuronide transporter; Provisional

Probab=99.01  E-value=8.4e-10  Score=106.51  Aligned_cols=149  Identities=16%  Similarity=0.142  Sum_probs=107.9

Q ss_pred             hhHHHHHHHHHHhhccccchhhhHHHHHH-HhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHH
Q 013991           41 TELFSIWIIVLCTALPISSLFPFLYFMIK-DFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (432)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~  119 (432)
                      +.+....+..++............|++.+ .+|.+...      .++......++..++.++++++.||+|+|+++.++.
T Consensus       228 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~  301 (448)
T PRK09848        228 RPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLF------TVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGA  301 (448)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence            34444444444444444444444554443 45654433      444444446777889999999999999999999999


Q ss_pred             HHHHHHHHHHhhhh--hHHHHHHHHHHHhhhccchhhH-Hhhhhhhcccc-------hhhhhhhhHHHHHHHHHHHHHHH
Q 013991          120 ASVVIFNTLFGLSV--NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREE-------HQALGLSTVSTAWGIGLIIGPAL  189 (432)
Q Consensus       120 ~~~~~~~~~~~~~~--~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~-------~r~~~~~~~~~~~~~g~~~g~~~  189 (432)
                      ++..++.++..+.+  +.+.+++..++.|+|.+...+. .++.+|..|.+       ++|...+..+....+|..+|+.+
T Consensus       302 ~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i  381 (448)
T PRK09848        302 LLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSI  381 (448)
T ss_pred             HHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHH
Confidence            88888877776643  6677777778889988877775 88888888754       35889999999999999999999


Q ss_pred             Hhhhcc
Q 013991          190 GGFLAQ  195 (432)
Q Consensus       190 ~~~l~~  195 (432)
                      .+.+.+
T Consensus       382 ~g~~l~  387 (448)
T PRK09848        382 PAFILG  387 (448)
T ss_pred             HHHHHH
Confidence            998876

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.97  E-value=3.5e-08  Score=93.41  Aligned_cols=122  Identities=13%  Similarity=0.095  Sum_probs=100.1

Q ss_pred             HHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 013991           66 FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLL  145 (432)
Q Consensus        66 ~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~  145 (432)
                      ...+.+|.++.+      .|++.+...++..++++..+++.||+++|+++..+.. .++..++.++.++++...+..++.
T Consensus       231 ~~~~~lg~s~~~------~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~  303 (393)
T PRK11195        231 WAPVALGITLNQ------PAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQHSLLPAYPLLILI  303 (393)
T ss_pred             HHHHHcCCChhH------HHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHH
Confidence            445668999988      9999999999999999999999999999988887753 444455556677777777777889


Q ss_pred             hhhccchhh-HHhhhhhhcccch-hhhhhhhHHHHHHHHHHHHHHHHhhhc
Q 013991          146 GSLNGLLGP-IKAYACEIFREEH-QALGLSTVSTAWGIGLIIGPALGGFLA  194 (432)
Q Consensus       146 G~~~g~~~~-~~~~i~~~~~~~~-r~~~~~~~~~~~~~g~~~g~~~~~~l~  194 (432)
                      |++.+...+ ..+.+.+..|++. +|++.++.+....+|..++..+.+.+.
T Consensus       304 G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~  354 (393)
T PRK11195        304 GALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLV  354 (393)
T ss_pred             HHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            998877665 4777888766654 799999999999999999999998764

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.96  E-value=7.6e-07  Score=88.54  Aligned_cols=158  Identities=15%  Similarity=0.149  Sum_probs=113.3

Q ss_pred             hhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhc-cCChHHHHHHHHHHHHHHHHHhhhhh-----
Q 013991           61 FPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKPVIIMGTASVVIFNTLFGLSVN-----  134 (432)
Q Consensus        61 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~-----  134 (432)
                      .....++.+.+|.+.++      ...+...+....-+..++.|.++|+ +||++.+.++.++..++.++.+++..     
T Consensus         8 aiLvlYl~~~lg~~~~~------A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~   81 (654)
T TIGR00926         8 TILVLYFLNFLGFSEST------STVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGH   81 (654)
T ss_pred             HHHHHHHHHHcCCcHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCccccc
Confidence            34445667778888887      7777777777778889999999995 89999999999999999888776421     


Q ss_pred             ---HHHHHHHHHHHhhhccchhhH-Hhhhhhhcccc---hhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCcCCCccccc
Q 013991          135 ---FWMAVLTRFLLGSLNGLLGPI-KAYACEIFREE---HQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSE  207 (432)
Q Consensus       135 ---~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~---~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~  207 (432)
                         ....+++-.+..+|.|..-++ .+...|.++++   +|.+.+.++..+.++|+.+++.+.+++.+..+.+..     
T Consensus        82 ~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~-----  156 (654)
T TIGR00926        82 PLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGC-----  156 (654)
T ss_pred             chHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc-----
Confidence               123445556666777777675 99999998754   467788888999999999999999988741110000     


Q ss_pred             ccccCccchHHHHHHHHHHHHHHHHH
Q 013991          208 SLFGKFPYFLPCLCISLFAFGVTIAA  233 (432)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (432)
                          ..+|...+.+.++..++.++..
T Consensus       157 ----~~~~~~aF~i~~i~m~ia~lvf  178 (654)
T TIGR00926       157 ----QDCYPLAFGVPAILMILALIVF  178 (654)
T ss_pred             ----CcchHHHHHHHHHHHHHHHHHH
Confidence                2245555566666555544443

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.96  E-value=8.6e-09  Score=111.15  Aligned_cols=147  Identities=13%  Similarity=0.075  Sum_probs=114.0

Q ss_pred             HHHHHHHHHHhhccccchhhhHHHHH-HHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHH
Q 013991           43 LFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (432)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~  121 (432)
                      ++...+..+...+....+...+|.+. +.+|.+..+      .|++.+.+.++.+++.++.|+++||.++++.+..+.++
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~------~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~  300 (1140)
T PRK06814        227 IWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENV------ATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALL  300 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHH------HHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHH
Confidence            33333333333333344445667555 457888888      99999999999999999999999988887776666666


Q ss_pred             HHHHHHHHhhh--------------------hhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHH
Q 013991          122 VVIFNTLFGLS--------------------VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWG  180 (432)
Q Consensus       122 ~~~~~~~~~~~--------------------~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~  180 (432)
                      .+++.+..++.                    ++.+.+++..++.|++.+...+. .+++.+.+|+++||+++|..+....
T Consensus       301 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~  380 (1140)
T PRK06814        301 MGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNA  380 (1140)
T ss_pred             HHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHH
Confidence            55555444432                    66777888888999988887665 9999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhcc
Q 013991          181 IGLIIGPALGGFLAQ  195 (432)
Q Consensus       181 ~g~~~g~~~~~~l~~  195 (432)
                      +|..+++++.+.+.+
T Consensus       381 ~~~~ig~~~~g~l~~  395 (1140)
T PRK06814        381 AFMVAGTIILALLQA  395 (1140)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999998874

>PRK11043 putative transporter; Provisional

Probab=98.95  E-value=1.8e-08  Score=95.86  Aligned_cols=128  Identities=11%  Similarity=0.027  Sum_probs=95.2

Q ss_pred             hhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHh---h--hhhH
Q 013991           61 FPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFG---L--SVNF  135 (432)
Q Consensus        61 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~---~--~~~~  135 (432)
                      ....|.+.+++|.+..+      .++......++..++.+..+++.||+|+|+.+....++..++.+...   .  .++.
T Consensus       223 ~~~~p~~~~~~g~s~~~------~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (401)
T PRK11043        223 LTGSPFILEQMGYSPAD------IGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSL  296 (401)
T ss_pred             HHHhHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcH
Confidence            34567777888998888      88888888889999999999999999999877665555444433221   1  2345


Q ss_pred             HHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcc
Q 013991          136 WMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (432)
Q Consensus       136 ~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (432)
                      +.+++...+.|++.+...+. .+...|..| ++|+++.++.+.....+...++.+.+.+.+
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~  356 (401)
T PRK11043        297 VPLLIPFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIS  356 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            55555666777777766665 666667665 689999999998888888888888888875

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.95  E-value=4.1e-07  Score=85.29  Aligned_cols=318  Identities=14%  Similarity=0.043  Sum_probs=183.3

Q ss_pred             hhHH-HHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhccchhhH-Hhhhhh
Q 013991           84 AGYV-GSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACE  161 (432)
Q Consensus        84 ~~~~-~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~  161 (432)
                      .|+. .++......+++++.+.+.|+.|.|+.+.++..++....+.+.+.+ -+-++....+.|+|.+..+.. ..+++|
T Consensus        51 aGy~~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~N-~y~~yfssallG~Gaallw~GqG~ylt~  129 (461)
T KOG3098|consen   51 AGYYGQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFPN-SYYLYFSSALLGFGAALLWTGQGGYLTS  129 (461)
T ss_pred             ccHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcc-hHHHHHHHHHhhhhHHheecccceehhh
Confidence            4444 6777788889999999999999999999999999998887776654 566788889999999998887 899999


Q ss_pred             hcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCcCCC-cccc-cccccCc--cchHHHHHHHHHHH--HHHHHHhh
Q 013991          162 IFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPN-LFSS-ESLFGKF--PYFLPCLCISLFAF--GVTIAAFW  235 (432)
Q Consensus       162 ~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~-~~gw-~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~  235 (432)
                      ..+++.+.+..++.-.....+.++|..+-..+......... ..+- +..++..  ....-++..+....  +.++...+
T Consensus       130 ~st~~tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~  209 (461)
T KOG3098|consen  130 NSTRETIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDF  209 (461)
T ss_pred             cCChhhHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheee
Confidence            99999999999998888888888887766555542211000 0000 0000000  00011111111111  11111122


Q ss_pred             cccccCCCCCCCcchhhhHHHhhhhhhhhhhhhccCCCCccccccchhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcC
Q 013991          236 LPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKL  315 (432)
Q Consensus       236 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (432)
                      +|.+......+..+ ..               ..+..+...+++++++.+.+...++..++...-+...+|..+....  
T Consensus       210 ~p~~~~~~~~~~~~-~~---------------~~~~l~~~~~l~~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~--  271 (461)
T KOG3098|consen  210 LPSKDVVNCKSSSE-TS---------------FSELLKLTFKLLKTPKMLLLFPFFFYTGLETSFWISIYPTCISFTR--  271 (461)
T ss_pred             cCccchhhhhhhcc-cc---------------HHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHhccchhhhhhh--
Confidence            22211111000000 00               0011123345677788777766666665555555555554333221  


Q ss_pred             CCcccc-cchhhHHHHHHHHHHHHHHHHhHHHHHHH---hChhHHHHHHHHHHHHHHHHhhHHHhhhh------------
Q 013991          316 GGLNYS-TQMVGEVLAITGFSLLVFQLSLYPFLERI---LGPIMVARIAGVLTIPLLTSYPYIAMLSG------------  379 (432)
Q Consensus       316 ~~~g~s-~~~~g~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  379 (432)
                       ..+.+ ....+......+++.++++. ..+.+.||   +|+++.+.++..+..+.+++.-.......            
T Consensus       272 -~~~~n~~~~~ai~~~~~g~g~v~~g~-~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~  349 (461)
T KOG3098|consen  272 -KLGSNTTYLIAIYSIGIGLGEVIGGL-DFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLF  349 (461)
T ss_pred             -hccCcchhHHHHHHHHHhHHHHHHHH-HHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCccccccc
Confidence             11222 22234445555566666553 44555544   57777777777666655544432211110            


Q ss_pred             hHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhH
Q 013991          380 FGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCH  423 (432)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~  423 (432)
                      .....+..+..++.|+.-.......+.++....| ++|..+...
T Consensus       350 ~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~-~~~~~~fsi  392 (461)
T KOG3098|consen  350 TPSYYLALIIGFLLGFGDACFNTQRYVIIALLYP-DDRAQAFSL  392 (461)
T ss_pred             ccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhc-CchHHHHHH
Confidence            0123456667778888888888899999999884 444444333

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.95  E-value=1.9e-09  Score=104.70  Aligned_cols=150  Identities=11%  Similarity=0.042  Sum_probs=106.8

Q ss_pred             hhHHHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHH
Q 013991           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (432)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~  120 (432)
                      +.+..+....++............+++.+....+.+.      .+++.+...++.+++.+++++++||+|+|+.+.++.+
T Consensus       231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~~~~~------~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~  304 (473)
T PRK10429        231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIGDADL------FPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASI  304 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            4444444444444444444444445555544334444      6677777778889999999999999999999998887


Q ss_pred             HHHHHHHHHhh-----hhhHHHHHHHHHHHhhhccchhhH-Hhhhhhhcc-------cchhhhhhhhHHHHHHHHHHHHH
Q 013991          121 SVVIFNTLFGL-----SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFR-------EEHQALGLSTVSTAWGIGLIIGP  187 (432)
Q Consensus       121 ~~~~~~~~~~~-----~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~-------~~~r~~~~~~~~~~~~~g~~~g~  187 (432)
                      +..++.+....     ..+.+.+++.-++.|++.+...+. .++++|..+       +++.|..++......-+|..+++
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~  384 (473)
T PRK10429        305 FPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAA  384 (473)
T ss_pred             HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHH
Confidence            76666555432     345666777777888887777665 889999866       33345688889999999999999


Q ss_pred             HHHhhhccc
Q 013991          188 ALGGFLAQP  196 (432)
Q Consensus       188 ~~~~~l~~~  196 (432)
                      .+.|++.+.
T Consensus       385 ~i~g~~l~~  393 (473)
T PRK10429        385 FFIGVVLGL  393 (473)
T ss_pred             HHHHHHHHH
Confidence            999998873

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.94  E-value=3.8e-08  Score=92.06  Aligned_cols=144  Identities=12%  Similarity=0.056  Sum_probs=95.3

Q ss_pred             hhHHHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCC---hHHHHH
Q 013991           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGR---KPVIIM  117 (432)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Gr---r~~l~~  117 (432)
                      +.++.+.+..++.......+...+|.+.++.|.+. +      .+...+...+...++   .++++||.+|   |+....
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~-~------~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~  261 (368)
T TIGR00903       192 KDLWIIGAILGFGVALFDNLAIWLEAALRPAGLED-I------AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIR  261 (368)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCh-H------HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHH
Confidence            44555666666666666677778898888877664 3      455555555544444   4677777654   343332


Q ss_pred             -HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhccchhh-HHhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhc
Q 013991          118 -GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (432)
Q Consensus       118 -~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  194 (432)
                       ..++.++.....+.+.+....++.-.+.|++.....+ ..++.+|.+|++.|+++.|+.+....+|.+++|.+.+.+.
T Consensus       262 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~  340 (368)
T TIGR00903       262 AAALLIAAFFLALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFI  340 (368)
T ss_pred             HHHHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHh
Confidence             3444444444444444444444444556665555545 4889999999999999999999999999999999988776

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.92  E-value=2.5e-08  Score=94.05  Aligned_cols=124  Identities=16%  Similarity=0.170  Sum_probs=83.8

Q ss_pred             hhhHH-HHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHhh----hhhH
Q 013991           61 FPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGL----SVNF  135 (432)
Q Consensus        61 ~~~~~-~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~----~~~~  135 (432)
                      ....| .+.+++|.++.+      .++..+...++..++.++.|++.||+|||+.+.++..+..+..+....    ..+.
T Consensus       214 ~~~~~~~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (377)
T PRK11102        214 LTAGPFVYIELNGVSPQN------FGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGF  287 (377)
T ss_pred             HHcCHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            33334 455668999888      999999999999999999999999999999998887665443332221    2244


Q ss_pred             HHHHHHHHHHhhhccchhh-HHhhhhhhcccchhhhhhhhHHHH-HHHHHHHHHHHHh
Q 013991          136 WMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTA-WGIGLIIGPALGG  191 (432)
Q Consensus       136 ~~l~~~r~~~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~-~~~g~~~g~~~~~  191 (432)
                      +.+.++-.+.+.+.+.... ...++.|..| ++|++..+..+.. ..+|..+++.+++
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~  344 (377)
T PRK11102        288 WALVVGVAAFVGCVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSL  344 (377)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4444444444444344343 3566777665 7899998887543 4566666666654

>PRK09669 putative symporter YagG; Provisional

Probab=98.91  E-value=6.2e-09  Score=100.35  Aligned_cols=113  Identities=19%  Similarity=0.243  Sum_probs=88.2

Q ss_pred             hhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHhhhccchhhH-Hhhhh
Q 013991           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGL--SVNFWMAVLTRFLLGSLNGLLGPI-KAYAC  160 (432)
Q Consensus        84 ~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~--~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~  160 (432)
                      .+.+.....++.+++.+++++++||+|+|+.+.++.++..+..+...+  .++.+.+++..++.|++.+...+. .++++
T Consensus       266 ~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~a  345 (444)
T PRK09669        266 ATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFS  345 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666677888889999999999999999998887766654433222  356777788888899988887776 88999


Q ss_pred             hhccc-------chhhhhhhhHHHHHHHHHHHHHHHHhhhccc
Q 013991          161 EIFRE-------EHQALGLSTVSTAWGIGLIIGPALGGFLAQP  196 (432)
Q Consensus       161 ~~~~~-------~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  196 (432)
                      |..+.       +..|...+..+....+|..+|+.++|.+.+.
T Consensus       346 d~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~  388 (444)
T PRK09669        346 DVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAW  388 (444)
T ss_pred             hhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88862       2345677888889999999999999999873

>PRK10133 L-fucose transporter; Provisional

Probab=98.90  E-value=1.9e-08  Score=96.46  Aligned_cols=119  Identities=11%  Similarity=0.006  Sum_probs=94.7

Q ss_pred             HHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhh
Q 013991           68 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGS  147 (432)
Q Consensus        68 ~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~  147 (432)
                      .+.+|.++.+      .++....+.++..++.++.|++.||+|||+++..+.++..++..+..+.++.+. +..-.+.|+
T Consensus       287 ~~~~g~s~~~------ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~gl  359 (438)
T PRK10133        287 EEIPGMTAGF------AANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVG-LIALTLCSA  359 (438)
T ss_pred             hhcCCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHH-HHHHHHHHH
Confidence            3467999998      999999999999999999999999999999999888877777666655555322 445567899


Q ss_pred             hccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcc
Q 013991          148 LNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (432)
Q Consensus       148 ~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (432)
                      +.+...|. .+...|..|+ +.+.+.++... ..+|..++|.+.|.+.+
T Consensus       360 g~~~i~P~~~s~a~~~~~~-~~~~as~l~~~-~~~g~~~~~~i~G~l~~  406 (438)
T PRK10133        360 FMSIQYPTIFSLGIKNLGQ-DTKYGSSFIVM-TIIGGGIVTPVMGFVSD  406 (438)
T ss_pred             HHHHHHHHHHHHHHcccch-hhccchhHHhH-HhccchHHHHHHHHHHH
Confidence            88888885 8888888765 45677777764 44678888888888887

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.90  E-value=4.4e-08  Score=92.89  Aligned_cols=148  Identities=20%  Similarity=0.143  Sum_probs=91.8

Q ss_pred             hhHHHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHH
Q 013991           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (432)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~  120 (432)
                      ++.+.+.+..++.+.........+|++.++ ..+...      ......+..+...+..|++|+++||+|+|+++.++.+
T Consensus       252 ~~~Wllslly~~tFG~fvg~s~~lp~~~~~-~~~~~~------~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i  324 (462)
T PRK15034        252 LHLWLLSLLYLATFGSFIGFSAGFAMLAKT-QFPDVN------ILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFI  324 (462)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HcChHH------HHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHH
Confidence            344555555555555555556667766544 222222      2223344567788899999999999999999999888


Q ss_pred             HHHHHHHHHhh-h-----hhHHHHHHHHHHHhhhccchhh-HHhhhhhhccc---------------------chhhhhh
Q 013991          121 SVVIFNTLFGL-S-----VNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFRE---------------------EHQALGL  172 (432)
Q Consensus       121 ~~~~~~~~~~~-~-----~~~~~l~~~r~~~G~~~g~~~~-~~~~i~~~~~~---------------------~~r~~~~  172 (432)
                      ...++...... .     .+++.+.+..+...++.|.-.. ...++.+++|+                     ++-|.+.
T Consensus       325 ~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~  404 (462)
T PRK15034        325 FMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAAL  404 (462)
T ss_pred             HHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHH
Confidence            77776643221 1     2455555444333333333322 35566666653                     2557788


Q ss_pred             hhHHHHHHHHHHHHHHHHhhhcc
Q 013991          173 STVSTAWGIGLIIGPALGGFLAQ  195 (432)
Q Consensus       173 ~~~~~~~~~g~~~g~~~~~~l~~  195 (432)
                      |+.+....+|..+-|.+-+...+
T Consensus       405 G~v~a~G~~Ggf~~p~~~g~~~~  427 (462)
T PRK15034        405 GFISAIGAVGGFFIPQAFGMSLN  427 (462)
T ss_pred             HHHHHHHHcccchhhHHHHHHHH
Confidence            88888889988888877677665

>TIGR00788 fbt folate/biopterin transporter

Probab=98.85  E-value=1.2e-08  Score=98.51  Aligned_cols=122  Identities=7%  Similarity=-0.037  Sum_probs=103.5

Q ss_pred             HHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHhhh----------hhHHHH
Q 013991           69 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS----------VNFWMA  138 (432)
Q Consensus        69 ~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~----------~~~~~l  138 (432)
                      +.+|.++.+      .|.+.....++.+++....+++.+|++.|+++.++.++.+++.+.....          ++.+.+
T Consensus       281 ~~lG~s~~~------~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~  354 (468)
T TIGR00788       281 QCLPGGPSF------SGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFV  354 (468)
T ss_pred             ccCCCCcch------hhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeee
Confidence            568999999      9999999999999999999999999999999999999998887654311          233344


Q ss_pred             HHHHHHHhhhccchhh-HHhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhccc
Q 013991          139 VLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP  196 (432)
Q Consensus       139 ~~~r~~~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  196 (432)
                      ...-++.+++.+.... ...++.+..|+++++...++.+...++|..+++.+++.+.+.
T Consensus       355 ~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~  413 (468)
T TIGR00788       355 LGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMET  413 (468)
T ss_pred             eehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556777887666555 599999999999999999999999999999999999999983

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.82  E-value=2.1e-07  Score=84.63  Aligned_cols=142  Identities=30%  Similarity=0.488  Sum_probs=117.0

Q ss_pred             HHHHHhhccccchhhhHHHHHHHhcCCc--cccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHH
Q 013991           48 IIVLCTALPISSLFPFLYFMIKDFQIAK--REEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF  125 (432)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~  125 (432)
                      ...+....+.....+..+.+..+++.+.  ..      .++..+.+.++..++.++.|.++||+|||+.+..+.....++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~   82 (338)
T COG0477           9 LAALLLGLDLGLLSPALPLLLSTLSLSSGRLL------YGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLG   82 (338)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHcCCCchhHH------HHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHH
Confidence            3344444666667777888888887766  35      899999999999999999999999999998888888766666


Q ss_pred             HHHHhhhhh--HHHHHHHHHHHhhhccchhhH-Hhhhhhhccc-chhhhhhhhHHH-HHHHHHHHHHHHHhhhcc
Q 013991          126 NTLFGLSVN--FWMAVLTRFLLGSLNGLLGPI-KAYACEIFRE-EHQALGLSTVST-AWGIGLIIGPALGGFLAQ  195 (432)
Q Consensus       126 ~~~~~~~~~--~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~-~~r~~~~~~~~~-~~~~g~~~g~~~~~~l~~  195 (432)
                      .+..++..+  .+.+++.|+.+|++.+...+. .+++.|..|+ ++|+...+.... ...+|..++|.+++.+..
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (338)
T COG0477          83 TLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLG  157 (338)
T ss_pred             HHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666665  889999999999988877776 9999999998 788999999888 688899999988888876

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=98.82  E-value=2.5e-06  Score=78.75  Aligned_cols=175  Identities=15%  Similarity=0.143  Sum_probs=109.8

Q ss_pred             HHHHHHHHhhccccchhhhHHHHHHHhcCCcccc--c----------------hhhhhhHHHHHHhHHHHHHHHhhhhhh
Q 013991           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREE--D----------------IGSYAGYVGSSFMFGRALTSVFWGLVA  106 (432)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~----------------~~~~~~~~~s~~~~~~~~~~~~~G~l~  106 (432)
                      ..|+..+++.+.+-++.....++.++...+..+.  +                .....+.+.-+-.+...+..+.+-++.
T Consensus         4 ~fw~~Gl~Nn~~yvv~lsaA~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~c~~~~t~~Vlladi~P~l~~Kl~aP~fi   83 (402)
T PF02487_consen    4 AFWLLGLCNNFLYVVMLSAAHDIVGEQKASPNSSHVDPDPPSTTLPSSSRRDCKSVSTGAVLLADILPSLLVKLIAPFFI   83 (402)
T ss_pred             HHHHHHHhcchhHhhhHHhHHHHhhccccCCCCCCCCCCCCCCcCCCccCCCCCcccchHHHHHHHHHHHHHHHHhHhhh
Confidence            3455666666666666666666665321110000  0                011134455556667777778888899


Q ss_pred             hccCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHH
Q 013991          107 DRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLII  185 (432)
Q Consensus       107 dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~  185 (432)
                      +|+..+.=..+..++..++.++.+++++.+.-+++-++.+++.|..... ..+ +..+++    ..++-++.+.+.++++
T Consensus        84 ~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~l-t~~y~~----~~l~~wssGTG~aGl~  158 (402)
T PF02487_consen   84 HRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSL-THFYGK----SSLSAWSSGTGGAGLV  158 (402)
T ss_pred             hhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHH-HHhcCc----cccccccCCcChhhHH
Confidence            9988665556667788889999999999988888888888887776665 444 445553    3577788888888888


Q ss_pred             HHHHHhhhcccCCcCCCcccccccccCccchHHHHHHHHHHHHHHHHHh-hcccc
Q 013991          186 GPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAF-WLPET  239 (432)
Q Consensus       186 g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~  239 (432)
                      |+..-..+.+ .              ..+.+...++...+.++.++..+ .+|++
T Consensus       159 Ga~~y~~lT~-~--------------g~s~~~tll~~~~lp~~~~~~~f~~L~~~  198 (402)
T PF02487_consen  159 GALYYLGLTT-L--------------GLSPRTTLLIMLVLPAIFLLSYFFLLPSP  198 (402)
T ss_pred             HHHHHHHHHH-h--------------CcCHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            8877655553 1              34455555665555544444433 44443

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=98.80  E-value=8.2e-06  Score=77.66  Aligned_cols=292  Identities=9%  Similarity=0.120  Sum_probs=162.4

Q ss_pred             hhHHHHHHHHHHhhccccchhhhHHHHHHHhcCCc-----cccchhhhhhHHHHHHhHHHHHH-HHhhhhhhhccCChHH
Q 013991           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAK-----REEDIGSYAGYVGSSFMFGRALT-SVFWGLVADRYGRKPV  114 (432)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-----~~~~~~~~~~~~~s~~~~~~~~~-~~~~G~l~dr~Grr~~  114 (432)
                      +.++...+..|+..+.++    .+-.+.+.+..+.     +.      ..++-+...+...+. .++.+++++|++|+++
T Consensus         7 ~k~~~~~l~fF~il~~Y~----iLR~lKD~lvv~~~~~gae~------i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~l   76 (472)
T TIGR00769         7 KKFLPLFLMFFCILFNYT----ILRDTKDTLVVTAKGSGAEI------IPFLKTWVVVPMAVIFMLIYTKLSNILSKEAL   76 (472)
T ss_pred             HHHHHHHHHHHHHHHHHH----HHHhhhhheeecccCCchhh------HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHh
Confidence            445555555555444433    3345566665532     34      788888777776666 8999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhh----h---------------------------hHHHHHHHHHHHhhhccch-hhH-Hhhhhh
Q 013991          115 IIMGTASVVIFNTLFGLS----V---------------------------NFWMAVLTRFLLGSLNGLL-GPI-KAYACE  161 (432)
Q Consensus       115 l~~~~~~~~~~~~~~~~~----~---------------------------~~~~l~~~r~~~G~~~g~~-~~~-~~~i~~  161 (432)
                      +-+....+.+...++++.    +                           +.|...+..+...+-+... ... .++.+|
T Consensus        77 f~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fand  156 (472)
T TIGR00769        77 FYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQ  156 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            888777777766666553    0                           1233333334444433333 334 889999


Q ss_pred             hcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCcCCCcccccccccCccch----HHHHHHHHHHHHHHHHHhhcc
Q 013991          162 IFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYF----LPCLCISLFAFGVTIAAFWLP  237 (432)
Q Consensus       162 ~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~  237 (432)
                      .+..+|-.|..++++.+.++|.++++.+..++.+...+.+..        ...|.    ....+.++..++.+.+...+.
T Consensus       157 i~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~i~~~~~~~~~~~~~~l~  228 (472)
T TIGR00769       157 ITTIDEAKRFYALFGLGANVALIFSGRTIKYFSKLRASLGPG--------VDGWHVSLKNLMVIVICSGLAIILLYWWVN  228 (472)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc--------cChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999988887421111100        11221    122333333333334444443


Q ss_pred             cccCCCCCCCcchhhhHHHhhhhhhhhhhhhccCCCCccccccchhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCC
Q 013991          238 ETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGG  317 (432)
Q Consensus       238 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (432)
                      +.... +++..  +.  ++    .+++++.+..-....+.++++|.++...+...+++..........-......     
T Consensus       229 ~~~~~-~~~~~--~~--~~----~~~k~k~k~~~~es~k~i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~-----  294 (472)
T TIGR00769       229 RNVLT-DPRSY--NP--AL----KEKKVKPKMSTMESLKFLVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQ-----  294 (472)
T ss_pred             hcccC-Ccccc--ch--hh----ccccCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence            22211 11000  00  00    0000000111123456678889888777666666544433333222222221     


Q ss_pred             ccccc----chhhHHHHHHHHHHHHHHHHhHHHHHHHhChhHHHHHHHHHHHH
Q 013991          318 LNYST----QMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIP  366 (432)
Q Consensus       318 ~g~s~----~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  366 (432)
                      + -++    .-.|.+....++...+.++ +.+++.+|+|-+....+.-++..+
T Consensus       295 ~-p~~~~~~~f~g~~~~~~gi~tl~~~l-~~~~l~~~~Gw~~~a~i~Pii~li  345 (472)
T TIGR00769       295 Y-PSPNEYSAFMGDFSTWTGVVSVTMML-LSGNVIRKYGWLTAALITPLVMLL  345 (472)
T ss_pred             C-CCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHH
Confidence            1 122    2244455566666666664 458999999887666655444333

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=98.78  E-value=5.5e-07  Score=80.37  Aligned_cols=354  Identities=13%  Similarity=0.085  Sum_probs=178.0

Q ss_pred             CCCchhHHHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhh-----ccCC
Q 013991           37 GLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD-----RYGR  111 (432)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~d-----r~Gr  111 (432)
                      +..++.+..+....++.++..+... .+|.+.+.-|.|.++      .+...-++.  --.--+.|.++.|     |+||
T Consensus        27 ~~d~~~illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~------~a~fS~ay~--P~sLKllWaPiVDs~y~k~~Gr   97 (510)
T KOG3574|consen   27 KGDRSSILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTS------QAIFSFAYW--PFSLKLLWAPIVDSVYSKRFGR   97 (510)
T ss_pred             hhhhhhHHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhh------hhhhhhhhh--HHHHHHHHHhhhHHHHHHhhcc
Confidence            3445678888888999999998888 889999988888877      443322221  1123468899999     9999


Q ss_pred             hHHHHHH-HHHHHHHHHHHhh-----------hhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHH
Q 013991          112 KPVIIMG-TASVVIFNTLFGL-----------SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTA  178 (432)
Q Consensus       112 r~~l~~~-~~~~~~~~~~~~~-----------~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~  178 (432)
                      ||.-++- ..+.+..+.+.+.           .++...+....++.-+..+..-.+ -.+.-....+++-|-+......+
T Consensus        98 rksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg  177 (510)
T KOG3574|consen   98 RKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVG  177 (510)
T ss_pred             ccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHH
Confidence            8865432 2222222222221           123333323333444444444333 55555566677777666655555


Q ss_pred             HHHHHHHHHHHHhhhcccC------CcCCCcccccccccCccchHHHHHHHHHHHH-HHHHHhhcccccCCCCCCCcchh
Q 013991          179 WGIGLIIGPALGGFLAQPA------EKYPNLFSSESLFGKFPYFLPCLCISLFAFG-VTIAAFWLPETLHRHNDDDDSCD  251 (432)
Q Consensus       179 ~~~g~~~g~~~~~~l~~~~------~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~  251 (432)
                      .+.|..++..+--.+....      -++|..-|.-..- .+     ....+...++ ..+..++-+|.+.. ..++.   
T Consensus       178 ~~~GyfL~~~ifLaL~s~dF~N~y~rs~P~~~g~ItL~-gy-----~~fwg~~~~vat~Lv~~~kke~~~~-~~~e~---  247 (510)
T KOG3574|consen  178 QTAGYFLGNVVFLALESPDFCNTYLRSIPLDQGFITLA-GY-----LWFWGALFIVATTLVALLKKENDES-VDEEL---  247 (510)
T ss_pred             HhhhHHhhcceeeEecChhhhhHHHhcCcCccceEEhh-HH-----HHHHHHHHHHHHHHHHHhcCCCchh-hhhhh---
Confidence            5555555544432222210      0112111110000 00     1112222222 22233332332222 11100   


Q ss_pred             hhHHHhhhhhhhhhhhhccCCCCccccccchhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHH
Q 013991          252 VSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAI  331 (432)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~  331 (432)
                            +...       ++.-+..+++++-|.+.....+....-..+.+-....++-+.+      .|.+..+.+++..+
T Consensus       248 ------~~~i-------~~~yk~l~~vLklk~v~~la~i~lt~K~gf~a~da~t~LkLle------~Gv~ke~Lal~~v~  308 (510)
T KOG3574|consen  248 ------ELGI-------HESYKLLRDVLKLKSVRWLAGILLTGKLGFQAADALTSLKLLE------HGVPKEELALIAVP  308 (510)
T ss_pred             ------hcCH-------HHHHHHHHHHHcCccHHHHHHHHHHHHHHhhhhhhccchHHHH------cCCChhHheeeeee
Confidence                  0000       0111234556677777777666666666666666666665554      58888887766533


Q ss_pred             HHHHHHHHHHHhHHHHHHHh-----ChhHHHHHHHHHHHHHHHH-hhHHHhhhh---hHHHHHHHHHHHHHHhhhhhHHH
Q 013991          332 TGFSLLVFQLSLYPFLERIL-----GPIMVARIAGVLTIPLLTS-YPYIAMLSG---FGLAFLLNCASVVKNLLSVSIIT  402 (432)
Q Consensus       332 ~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  402 (432)
                      .--..++....++.+.+++.     -+....++........+.. .+......+   ...+++......+.+.+....+-
T Consensus       309 ~~plqI~l~~~~gk~ta~~~pl~~~lka~~~R~~~~~~~t~Lv~~~~~~~~~~G~~~~~~~il~i~~y~~~~~~~ts~fv  388 (510)
T KOG3574|consen  309 LVPLQIALPLYIGKWTAGPRPLNVFLKAVPYRLGGGLVQTALVWWTPTLGHSDGTFPRGYYILLITSYAFHQVFVTSMFV  388 (510)
T ss_pred             hhhHHHhhhhhheeecCCCCcchHHHHhhhHHHHHHHHHHHHHhhhcccccCCCceeechHHHHHHHHHHhhhHHHHHHH
Confidence            33333333333333333221     1222233333322222221 111111011   12334444445566666666777


Q ss_pred             HHHHHHhccccccchhhhhhHHHHHh
Q 013991          403 GLFILQNRAVVRVLTYTLSCHFWFVK  428 (432)
Q Consensus       403 ~~~~~~~~~~p~~~~g~~~~~~~~~~  428 (432)
                      ..++..+++.|++..|+.+.+.+++.
T Consensus       389 ~~maf~aqisdp~iggTymTlLNTLs  414 (510)
T KOG3574|consen  389 SGMAFHAQISDPAIGGTYMTLLNTLS  414 (510)
T ss_pred             HHHHHHhhcCCcccCccHHHHHHHHH
Confidence            88888899999999999998888764

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.77  E-value=1.3e-07  Score=90.18  Aligned_cols=180  Identities=14%  Similarity=0.229  Sum_probs=121.1

Q ss_pred             CCCCchh------HHHHHHHHHHhhccccchhhhHHHHH-HHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhc
Q 013991           36 SGLPITE------LFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR  108 (432)
Q Consensus        36 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr  108 (432)
                      .+.|++.      ++.+++..+........+....|.+. +-+|.+..+      .|++.++..+...+..+++|.++||
T Consensus       247 ~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~------~G~~salP~l~~~~~k~~~g~lsD~  320 (466)
T KOG2532|consen  247 PPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRE------TGFLSALPFLAMAIVKFVAGQLSDR  320 (466)
T ss_pred             CCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhh------hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456555      55778888888888888889999555 568999999      9999999999999999999999998


Q ss_pred             cCC---------hHHHHHHHHHHHHHHHHHhhhhh--H-HHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhH
Q 013991          109 YGR---------KPVIIMGTASVVIFNTLFGLSVN--F-WMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTV  175 (432)
Q Consensus       109 ~Gr---------r~~l~~~~~~~~~~~~~~~~~~~--~-~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~  175 (432)
                      .-+         |-.=.++....+++.+..++.++  . ..+++.-+..++ .|..... ..-..|. .|+.-+..+|+.
T Consensus       321 l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~-~g~~~~Gf~~~~~~~-apq~a~~l~g~~  398 (466)
T KOG2532|consen  321 LTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGL-SGFNISGFYKNHQDI-APQHAGFVMGII  398 (466)
T ss_pred             HhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHH-cccchhhhHhhhhhc-cchHHHHHHHHH
Confidence            755         22224445555555555555442  2 122222222222 2222222 3333333 456779999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcccCCcCCCcccccccccCccchHHHHHHHHHHHHHHHHHhhc
Q 013991          176 STAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL  236 (432)
Q Consensus       176 ~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (432)
                      +....+...++|.+.+.+.+ .+   +         +..|+..|++.+++.++.-+...+.
T Consensus       399 ~~~~~~~~~~~P~~vg~~~~-~~---t---------~~eW~~VF~i~a~i~~~~~i~f~~f  446 (466)
T KOG2532|consen  399 NFVGALAGFIAPLLVGIIVT-DN---T---------REEWRIVFLIAAGILIVGNIIFLFF  446 (466)
T ss_pred             HHHHHHHHHHHHHheeeEeC-CC---C---------HHHHHHHHHHHHHHHHHhchheeEe
Confidence            99999999999999999985 11   1         4456777788877776655444333

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.77  E-value=9.7e-08  Score=81.05  Aligned_cols=322  Identities=12%  Similarity=0.034  Sum_probs=173.2

Q ss_pred             hhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHhhh
Q 013991           53 TALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS  132 (432)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~  132 (432)
                      ...+.-...|...++-+.++....+      +|.+..+..-..++...+.|.++||-|||+.-+.-++.+.++|+ .-.+
T Consensus        49 mmAgDWLQgPYvYyLYstYgFgkG~------IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhS  121 (454)
T KOG4332|consen   49 MMAGDWLQGPYVYYLYSTYGFGKGD------IGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHS  121 (454)
T ss_pred             HHhhhhhcCceeeeeehhcCccCCc------cceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcC
Confidence            3334445567766777888998888      89888888888899999999999999999975554544444433 3357


Q ss_pred             hhHHHHHHHHHHHhhhccchhhH--HhhhhhhcccchhhhhhhhHH--------HHHHHHHHHHHHHHhhhcccCCcCCC
Q 013991          133 VNFWMAVLTRFLLGSLNGLLGPI--KAYACEIFREEHQALGLSTVS--------TAWGIGLIIGPALGGFLAQPAEKYPN  202 (432)
Q Consensus       133 ~~~~~l~~~r~~~G~~~g~~~~~--~~~i~~~~~~~~r~~~~~~~~--------~~~~~g~~~g~~~~~~l~~~~~~~~~  202 (432)
                      +.+-.++++|++-|+..+....+  .-++.|.-.+  |+.-.-+..        .+..+-.+++.+.+-.+.+       
T Consensus       122 pqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHnek--r~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd-------  192 (454)
T KOG4332|consen  122 PQYKVLMVGRVLGGIATSLLFSAFESWLIAEHNEK--RGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVD-------  192 (454)
T ss_pred             CceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhhc--cCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHH-------
Confidence            78889999999999988876654  5567777633  332111111        2223334445555555554       


Q ss_pred             cccccccccCccchHHHHHHHHHHHHH-HHHHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhccCCCCccccccc
Q 013991          203 LFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKN  281 (432)
Q Consensus       203 ~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (432)
                      .+       ..|...||-.++....+. .+.+---.|.-.+..+++    +...              +-+...+.+..+
T Consensus       193 ~~-------slGPVAPFdAAacfLaigmAvil~~W~ENygdps~~k----dllt--------------qf~gaa~aiaSD  247 (454)
T KOG4332|consen  193 TF-------SLGPVAPFDAAACFLAIGMAVILSSWSENYGDPSENK----DLLT--------------QFKGAARAIASD  247 (454)
T ss_pred             Hh-------ccCCCCchHHHHHHHHHHHHHHHhhhhhccCChhhhH----HHHH--------------HhhHhHHHHhcc
Confidence            11       334445555544433332 222222233322211111    0000              011122334455


Q ss_pred             hhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhC--hhHHHHH
Q 013991          282 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG--PIMVARI  359 (432)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~  359 (432)
                      +++..+..+-.++-.....+     +++.++...  -+-...--|.+++.+-....+|+- +..++..|-.  ....+.+
T Consensus       248 ~ki~LLG~iqsLFE~smytF-----VFLWTPaLs--pn~e~iPhGfiFatFMlASmLGSS-la~Rl~s~s~~~ve~ymqi  319 (454)
T KOG4332|consen  248 EKIALLGAIQSLFEGSMYTF-----VFLWTPALS--PNDEEIPHGFIFATFMLASMLGSS-LASRLLSRSSPKVESYMQI  319 (454)
T ss_pred             hHHHHHHHHHHHHhhhhhee-----eeeecccCC--CCcccCCchhHHHHHHHHHHHhhH-HHHHHHhcCCcccchHHHH
Confidence            55544433333322222111     233333111  011122257777777777777774 4433333322  2234445


Q ss_pred             HHHHHHHHHHHhhHHHh-hhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhH
Q 013991          360 AGVLTIPLLTSYPYIAM-LSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCH  423 (432)
Q Consensus       360 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~  423 (432)
                      .+++.++.+.+...... .++......-+++.+..-.+.+..+|...-+-++..|++.|++..-.
T Consensus       320 vf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEearstimNf  384 (454)
T KOG4332|consen  320 VFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWPSIMKMRSQYIPEEARSTIMNF  384 (454)
T ss_pred             HHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHHHhhhhhh
Confidence            55554444333222211 11112222334555555567778899999999999999999876543

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.73  E-value=2.2e-07  Score=88.13  Aligned_cols=123  Identities=15%  Similarity=0.085  Sum_probs=89.8

Q ss_pred             HHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHH-HHHHHHHHhh--hhhHHHHHHHH
Q 013991           66 FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS-VVIFNTLFGL--SVNFWMAVLTR  142 (432)
Q Consensus        66 ~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~-~~~~~~~~~~--~~~~~~l~~~r  142 (432)
                      .+.+.+|.+..+      .+++.....++..++.++.+++.||++++........+ ..+.......  ..+.+.+.+..
T Consensus       233 ~~~~~~g~~~~~------~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (394)
T PRK11652        233 LMGAVLGLSSMT------VSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPA  306 (394)
T ss_pred             HHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence            334448888887      89998888999999999999999999843333222222 2222122222  23556677778


Q ss_pred             HHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcc
Q 013991          143 FLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (432)
Q Consensus       143 ~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (432)
                      ++.|++.+...+. .++..|..| ++++...++.+....+|..+++.+++.+.+
T Consensus       307 ~~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~  359 (394)
T PRK11652        307 ALFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQ  359 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            8888888877775 888888886 578999999999999999999999988865

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.72  E-value=9.5e-07  Score=78.84  Aligned_cols=148  Identities=17%  Similarity=0.128  Sum_probs=115.4

Q ss_pred             HHHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhc-cCChHHHHHHHHH
Q 013991           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKPVIIMGTAS  121 (432)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~l~~~~~~  121 (432)
                      -+.+.+..-+..+..++....+|.+..|.|.|..+      .|++.+...+.....++..-.+++| -++|+..+...++
T Consensus       210 aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~------aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~  283 (395)
T COG2807         210 AWQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAE------AGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLL  283 (395)
T ss_pred             hHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHH------hhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence            44455555566777788889999999999999999      9999999999999999999999996 4567777888888


Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHhhhccchhhH-Hhhhhhhcc-cchhhhhhhhHHHHHHHHHHHHHHHHhhhcccC
Q 013991          122 VVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFR-EEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (432)
Q Consensus       122 ~~~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  197 (432)
                      +.++.+.+.+.+.-..+.- -++.|+|.|...+. ..++.+..+ +++-++-.++.+....+=..+||.+.|++-|..
T Consensus       284 ~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~  360 (395)
T COG2807         284 MLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDAT  360 (395)
T ss_pred             HHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhc
Confidence            8888887777654332222 48899998887775 888877776 455566666667666666788999999999853

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.71  E-value=2.4e-07  Score=86.91  Aligned_cols=152  Identities=12%  Similarity=0.194  Sum_probs=115.1

Q ss_pred             chhHHHHHHHHHHhhccccchhhhHHHHHH-HhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHH
Q 013991           40 ITELFSIWIIVLCTALPISSLFPFLYFMIK-DFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (432)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~  118 (432)
                      .|.+..+.+..++.....++......++.+ .+|.++..      ..+.......+.+++.+++.++++|+|+|+++.++
T Consensus       235 Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~------~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~  308 (467)
T COG2211         235 NRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELF------AYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIG  308 (467)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHH------HHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHH
Confidence            344555555566666666666666655543 34555555      66777778888888899999999999999999999


Q ss_pred             HHHHHHHHHHHhhhh--hHHHHHHHHHHHhhhccchhhH-Hhhhhhhccc-------chhhhhhhhHHHHHHHHHHHHHH
Q 013991          119 TASVVIFNTLFGLSV--NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFRE-------EHQALGLSTVSTAWGIGLIIGPA  188 (432)
Q Consensus       119 ~~~~~~~~~~~~~~~--~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~-------~~r~~~~~~~~~~~~~g~~~g~~  188 (432)
                      .++.+++.++..+.+  +.+.+++..++.+++.+...+. .++++|..+-       +.-|...+......=+|..++..
T Consensus       309 ~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~  388 (467)
T COG2211         309 LLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGF  388 (467)
T ss_pred             HHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHH
Confidence            999999999888865  7888888889999998888776 8888877652       33366677777777788999988


Q ss_pred             HHhhhcccC
Q 013991          189 LGGFLAQPA  197 (432)
Q Consensus       189 ~~~~l~~~~  197 (432)
                      +.|++....
T Consensus       389 ~~g~~L~~~  397 (467)
T COG2211         389 IPGWILGAI  397 (467)
T ss_pred             HHHHHHHHc
Confidence            888887733

>PRK11462 putative transporter; Provisional

Probab=98.70  E-value=2.2e-07  Score=89.68  Aligned_cols=147  Identities=12%  Similarity=0.130  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHH
Q 013991           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV  122 (432)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~  122 (432)
                      +..+....++.............++.+...-+++.      .+.+...+.++.+++.+++++++||+|+|+++..+..+.
T Consensus       230 ~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~~~~------~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~  303 (460)
T PRK11462        230 WRIVGLLTIFNILAVCVRGGAMMYYVTWILGTPEV------FVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALL  303 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCChHH------HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence            33333334444444444444444444443333333      566777888888999999999999999999877655544


Q ss_pred             HHHHHHHhhhh--hHHHHHHHHHHHhhhccchhhH-Hhhhhhhcc-------cchhhhhhhhHHHHHHHHHHHHHHHHhh
Q 013991          123 VIFNTLFGLSV--NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFR-------EEHQALGLSTVSTAWGIGLIIGPALGGF  192 (432)
Q Consensus       123 ~~~~~~~~~~~--~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~-------~~~r~~~~~~~~~~~~~g~~~g~~~~~~  192 (432)
                      .+..++..+.+  +.+.+++.-++.|++.+...+. .++++|..+       +++.|...+......-+|..+|+.+++.
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~  383 (460)
T PRK11462        304 AVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGW  383 (460)
T ss_pred             HHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44333333322  2333444455667766655554 677777766       2333555577778888999999999998


Q ss_pred             hcc
Q 013991          193 LAQ  195 (432)
Q Consensus       193 l~~  195 (432)
                      +.+
T Consensus       384 iL~  386 (460)
T PRK11462        384 MLA  386 (460)
T ss_pred             HHH
Confidence            886

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.70  E-value=3.9e-08  Score=91.65  Aligned_cols=151  Identities=21%  Similarity=0.341  Sum_probs=126.8

Q ss_pred             HHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHH
Q 013991           47 WIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFN  126 (432)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~  126 (432)
                      ++..++.+.+...+..++--..+|.+..+.-      .|........+-++.-++.+++.+|+|+-+++..++.+..+=.
T Consensus       377 f~~av~mG~g~~lv~tFLfWHled~~~~~~L------fGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf  450 (618)
T KOG3762|consen  377 FFVAVVMGAGVGLVFTFLFWHLEDLGGIKTL------FGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRF  450 (618)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcCCccee------eeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHH
Confidence            3344445555555556665667888876666      8877788888888889999999999999999999999999999


Q ss_pred             HHHhhhhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhH-HHHHHHHHHHHHHHHhhhcccCCcCCCcc
Q 013991          127 TLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTV-STAWGIGLIIGPALGGFLAQPAEKYPNLF  204 (432)
Q Consensus       127 ~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~-~~~~~~g~~~g~~~~~~l~~~~~~~~~~~  204 (432)
                      +.....+|.|+.+...+++|+..+..+.+ .+|+++..||+-|..+.++. ....++|-.+|.++||.+.+       .+
T Consensus       451 ~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~-------~f  523 (618)
T KOG3762|consen  451 LYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVE-------RF  523 (618)
T ss_pred             HHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhhe-------ee
Confidence            99999999999999999999998888775 99999999999999999998 56678999999999999998       55


Q ss_pred             cccccc
Q 013991          205 SSESLF  210 (432)
Q Consensus       205 gw~~~~  210 (432)
                      |-++.|
T Consensus       524 g~~ttf  529 (618)
T KOG3762|consen  524 GARTTF  529 (618)
T ss_pred             hhHHHH
Confidence            555554

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.68  E-value=3.1e-07  Score=87.37  Aligned_cols=146  Identities=12%  Similarity=-0.055  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHH
Q 013991           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV  122 (432)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~  122 (432)
                      +....+..++...........++.+.++.+.+.+...    .+...+.+..+..++.++.|++.||+++|+++.+..++.
T Consensus       234 ~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~----a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~  309 (410)
T TIGR00885       234 YREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGF----AANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIG  309 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence            3333444444333333444556666555433222211    455666677788899999999999999999999999988


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcc
Q 013991          123 VIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (432)
Q Consensus       123 ~~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (432)
                      .+.+++....++... ...-++.|++.+...|. .+...+..+++.+....++..  ..+|..+.|.+.|++.|
T Consensus       310 ~~~~ll~~~~~~~~~-~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~--~~~Gga~~p~l~G~~~d  380 (410)
T TIGR00885       310 MALCLGSIFAGGHVG-LYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVM--AIIGGGIVPPLQGFIID  380 (410)
T ss_pred             HHHHHHHHHcCChHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH--HHhccchHHHHHHHHHH
Confidence            888888888766544 44455667766666675 888888888665433333332  23999999999999998

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.67  E-value=4.6e-07  Score=87.85  Aligned_cols=150  Identities=13%  Similarity=0.092  Sum_probs=106.8

Q ss_pred             HHHHHHHHHhhccccchhhhHHHHHHH-hcCCccccchhhhhhHHHHHHhHHHHHHHHhhh----hhhhc-cCChHHH--
Q 013991           44 FSIWIIVLCTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWG----LVADR-YGRKPVI--  115 (432)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G----~l~dr-~Grr~~l--  115 (432)
                      ..+++...+......-....++.++++ .+.+..  ......+++.+...+..++.+++..    ++.|| .+.+...  
T Consensus       275 l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~--~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~  352 (475)
T TIGR00924       275 IVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEML--GMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKF  352 (475)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc--ceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHH
Confidence            334444444444444444545544433 332211  1112267888888888888888755    45554 3334433  


Q ss_pred             HHHHHHHHHHHHHHhh---------hhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHH
Q 013991          116 IMGTASVVIFNTLFGL---------SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLII  185 (432)
Q Consensus       116 ~~~~~~~~~~~~~~~~---------~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~  185 (432)
                      .+|.++.+++.+..++         ..|++++++..++.++|.....|. .+++.+..|++.|++.+|++.....+|..+
T Consensus       353 ~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l  432 (475)
T TIGR00924       353 TLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLL  432 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence            7788888888777764         468999999999999999999887 999999999999999999999999999999


Q ss_pred             HHHHHhhhcc
Q 013991          186 GPALGGFLAQ  195 (432)
Q Consensus       186 g~~~~~~l~~  195 (432)
                      ++.+......
T Consensus       433 ~~~~~~~~~~  442 (475)
T TIGR00924       433 GGYLATFGAV  442 (475)
T ss_pred             HHHHHHHHhc
Confidence            9998887765

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.61  E-value=1.1e-07  Score=85.39  Aligned_cols=157  Identities=18%  Similarity=0.221  Sum_probs=116.4

Q ss_pred             HHHhhccccchhhhHHH-HHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccC--ChHHHHHHHHHHHHHH
Q 013991           50 VLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYG--RKPVIIMGTASVVIFN  126 (432)
Q Consensus        50 ~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G--rr~~l~~~~~~~~~~~  126 (432)
                      .....+.....-|.++. ..+.+..+..+      .|...--..+.+.++..+.|.++||++  |-.....+++..++++
T Consensus       279 i~~~n~~lafLePtlslwm~e~m~~p~w~------~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~  352 (464)
T KOG3764|consen  279 ITFSNSSLAFLEPTLSLWMLETMFTPGWE------VGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSS  352 (464)
T ss_pred             hhhccchHHHhCcccHHHHHHhccCCCcc------eeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHh
Confidence            33445555666777775 45667755557      888888888999999999999999999  5444556677777788


Q ss_pred             HHHhhhhhHHHHHHHHHHHhhhccchhh----HHhhhhhhcccc---hhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCc
Q 013991          127 TLFGLSVNFWMAVLTRFLLGSLNGLLGP----IKAYACEIFREE---HQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK  199 (432)
Q Consensus       127 ~~~~~~~~~~~l~~~r~~~G~~~g~~~~----~~~~i~~~~~~~---~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~  199 (432)
                      ....+++++.++.+-++..|++.+....    ...++.|.-..+   ..|...++...++++|..+||.++|.+.+    
T Consensus       353 ~~iP~~~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~----  428 (464)
T KOG3764|consen  353 GPIPFATSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVE----  428 (464)
T ss_pred             chhHhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchhee----
Confidence            8888999999999988888877666443    333444433333   56789999999999999999999999998    


Q ss_pred             CCCcccccccccCccchHHHHHHHHHHHH
Q 013991          200 YPNLFSSESLFGKFPYFLPCLCISLFAFG  228 (432)
Q Consensus       200 ~~~~~gw~~~~~~~~~~~~~~~~~~~~~~  228 (432)
                                  ++++.+...+.++..++
T Consensus       429 ------------~iGF~wl~~iig~~n~i  445 (464)
T KOG3764|consen  429 ------------AIGFEWLMTIIGILNLI  445 (464)
T ss_pred             ------------ehhHHHHHHHHHHHHHH
Confidence                        55555555555555554

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.60  E-value=1.3e-06  Score=79.76  Aligned_cols=172  Identities=17%  Similarity=0.140  Sum_probs=129.8

Q ss_pred             HHHhhccccchhhhH-HHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhh-ccCChHHHHHHHHHHHHHHH
Q 013991           50 VLCTALPISSLFPFL-YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD-RYGRKPVIIMGTASVVIFNT  127 (432)
Q Consensus        50 ~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~d-r~Grr~~l~~~~~~~~~~~~  127 (432)
                      .++..+..++....+ |+=.+-||.+..|      ...++.....|..++-...|++.. |.++|+.-.+++....++..
T Consensus       217 l~l~t~a~~~QD~iLEPygg~Vfgmsv~e------TT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~  290 (403)
T PF03209_consen  217 LFLGTLAFFMQDVILEPYGGEVFGMSVGE------TTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFA  290 (403)
T ss_pred             HHHHHHHHHhhHHHcCCchhHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Confidence            334444455556666 4456779999999      899999999999999999998877 67778888888888777766


Q ss_pred             HHhh---hhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCcCCCc
Q 013991          128 LFGL---SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNL  203 (432)
Q Consensus       128 ~~~~---~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~  203 (432)
                      +..+   ..+.+.+...-++.|++.|.+... .+...|...+++.|..+|.++....++..+|..++|.+.|....+...
T Consensus       291 lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~  370 (403)
T PF03209_consen  291 LIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGN  370 (403)
T ss_pred             HHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            6544   356788888889999999999886 889999999999999999999999999999999999998743211100


Q ss_pred             ccccccccCccchHHHHHHHHHHHHHHHHH
Q 013991          204 FSSESLFGKFPYFLPCLCISLFAFGVTIAA  233 (432)
Q Consensus       204 ~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (432)
                           . ...+|-..|.+-++..++.+...
T Consensus       371 -----~-~~~aY~~VF~lEa~ll~~a~~ll  394 (403)
T PF03209_consen  371 -----S-PALAYGVVFALEAVLLLAALVLL  394 (403)
T ss_pred             -----C-cchHHHHHHHHHHHHHHHHHHHH
Confidence                 0 03345566666666555544443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.58  E-value=9.9e-07  Score=82.71  Aligned_cols=129  Identities=14%  Similarity=0.035  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhChhHHHHHHHHH
Q 013991          284 LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVL  363 (432)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  363 (432)
                      ++...+.+++.......+..+.|.++++.     +|+|+.+.+++.+...++..+++ ++.+++.||+|+|+.+.++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~s~~~~~~~~~~~~~~~~~~~-~~~g~l~dr~g~r~~~~~~~~~   76 (366)
T TIGR00886         3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDD-----LGLSTAQLGNLVAVPVLAGAVLR-IILGFLVDKFGPRYTTTLSLLL   76 (366)
T ss_pred             hHHHHHHHHHHHHHHHHhHHhhhHHHHHH-----hCCCHHHhhHhhHHHHHHHHHHH-HHHHHHHHHhCchHHHHHHHHH
Confidence            34455555555666666677777555554     79999999999999999999998 6899999999999999999988


Q ss_pred             HHHHHHHhhHHH-hhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHH
Q 013991          364 TIPLLTSYPYIA-MLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFW  425 (432)
Q Consensus       364 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~  425 (432)
                      ..++.++..+.. ...      .+.+..++.+.+.+ ..+....++.+..|+++|+++.+.+.
T Consensus        77 ~~i~~~~~~~~~~~~~------~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~  132 (366)
T TIGR00886        77 LAIPCLWAGLAVQSYS------VLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAA  132 (366)
T ss_pred             HHHHHHHHHHHhhhHH------HHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHH
Confidence            888877776654 222      23334444455443 34556788899999999999888765

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.56  E-value=5.3e-08  Score=89.10  Aligned_cols=194  Identities=14%  Similarity=0.032  Sum_probs=132.6

Q ss_pred             hhHHHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchh--hhhhHHHHHH-hHHHHHHHHhhhhhhhccCChHHHHH
Q 013991           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIG--SYAGYVGSSF-MFGRALTSVFWGLVADRYGRKPVIIM  117 (432)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~--~~~~~~~s~~-~~~~~~~~~~~G~l~dr~Grr~~l~~  117 (432)
                      +.++..+..+|+.-+..+........+.++.|..+++++..  .-......+. ..+++.+-.+...+.|++|||+..+.
T Consensus       304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~  383 (538)
T KOG0252|consen  304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM  383 (538)
T ss_pred             HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence            34455667777777777888888889999888877663220  0112222222 23334466778889999999999999


Q ss_pred             HHHHHHHHHHHHhhhhh----HHHHHHHHHHHhhh--ccchhhHHhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHh
Q 013991          118 GTASVVIFNTLFGLSVN----FWMAVLTRFLLGSL--NGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGG  191 (432)
Q Consensus       118 ~~~~~~~~~~~~~~~~~----~~~l~~~r~~~G~~--~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~  191 (432)
                      +.+++++..+..+...|    -..+++...+..+.  .|.......+-+|.+|.+.|+.+-|+..+..=.|+++|...-.
T Consensus       384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~  463 (538)
T KOG0252|consen  384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFL  463 (538)
T ss_pred             hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhh
Confidence            99999999998888765    12223333333332  1222223556789999999999999999999999999998888


Q ss_pred             hhcccCCcCCCcccccccccCccchHHHHHHHHHHHHHHHHHhhcccccCCCCC
Q 013991          192 FLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHND  245 (432)
Q Consensus       192 ~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  245 (432)
                      .+.+..  +|..         .+.+..+++.+.+.+..++..+++||+..+..+
T Consensus       464 ~~t~~~--yp~~---------~g~~~v~~i~~~~~~~gi~~T~l~pEtk~~~le  506 (538)
T KOG0252|consen  464 YLTDHN--YPPN---------IGVRNVFIILAGCMLLGILFTLLIPETKGKSLE  506 (538)
T ss_pred             Hhhhcc--CCcc---------ccchHHHHHHHHHHHHhHheeEEeecccccCHH
Confidence            887632  3333         334455577777777777777888988765443

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.56  E-value=4.5e-10  Score=108.56  Aligned_cols=164  Identities=18%  Similarity=0.274  Sum_probs=101.2

Q ss_pred             cchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHh--h---h
Q 013991           58 SSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFG--L---S  132 (432)
Q Consensus        58 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~--~---~  132 (432)
                      .......+.+.++.+.+... .    ...   ...+...++.+....+.||+|||+.++.+..+.+++.+..+  .   .
T Consensus       270 ~~~~~~~~~i~~~~~~~~~~-~----~~~---~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~  341 (451)
T PF00083_consen  270 NFIFYYSPSIFENAGISNSF-L----ATL---ILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGV  341 (451)
T ss_pred             cccccccccccccccccccc-c----ccc---cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            34444556677777776651 0    222   22344456667777999999999999999988888877664  1   1


Q ss_pred             hh-----HHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCcCCCcccc
Q 013991          133 VN-----FWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSS  206 (432)
Q Consensus       133 ~~-----~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw  206 (432)
                      ++     ...+...............+. ..+..|.+|.+.|+++.++......++..+++.+...+.+.       .+ 
T Consensus       342 ~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~-------~~-  413 (451)
T PF00083_consen  342 SSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNN-------LG-  413 (451)
T ss_pred             ccccccccccceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccc-------cc-
Confidence            11     112221211111112123344 68889999999999999999888888888888887777651       11 


Q ss_pred             cccccCccchHHHHHHHHHHHHHHHHHhhcccccCCCC
Q 013991          207 ESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHN  244 (432)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  244 (432)
                             .+.......++..+..++..+++||+..+..
T Consensus       414 -------~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l  444 (451)
T PF00083_consen  414 -------GWGVFLIFAGVCLIAIIFVYFFLPETKGKTL  444 (451)
T ss_pred             -------ccccchhhHHHHHHHHhheeEEEeeCCCCCH
Confidence                   0111123333334445556678999876543

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=98.55  E-value=1.3e-06  Score=83.83  Aligned_cols=136  Identities=10%  Similarity=-0.031  Sum_probs=97.5

Q ss_pred             chhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHh-ChhHHHHH
Q 013991          281 NWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL-GPIMVARI  359 (432)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~  359 (432)
                      .+.++..........+...+...++|.|+.+.     +|++..+++.+.........++. +++++++||+ |||+.+.+
T Consensus         8 p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~-----lgls~~~a~~i~~~~~~~~~l~~-ligG~LaDRilGrrr~ili   81 (493)
T PRK15462          8 PRAIYYVVALQIWEYFSFYGMRALLILYLTNQ-----LKYDDNHAYELFSAYCSLVYVTP-ILGGFLADKVLGNRMAVML   81 (493)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHccCcHHHHHH
Confidence            34555556666666777788888999998775     79999999999999888888887 6999999999 99999999


Q ss_pred             HHHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcccccc--chhhhhhHHHHH
Q 013991          360 AGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRV--LTYTLSCHFWFV  427 (432)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~g~~~~~~~~~  427 (432)
                      +.++..++.+++.......   .  ...+...+...+.+...+...+++.|..|++  +|.++.+.+|..
T Consensus        82 G~il~~lg~lll~~~~~~~---~--~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~  146 (493)
T PRK15462         82 GALLMAIGHVVLGASEIHP---S--FLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAA  146 (493)
T ss_pred             HHHHHHHHHHHHHHhhcch---h--HHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHH
Confidence            9888887766554221111   0  1222222223344555577788899999875  688888887754

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.54  E-value=9.4e-07  Score=80.04  Aligned_cols=148  Identities=16%  Similarity=0.128  Sum_probs=118.2

Q ss_pred             CchhHHHHHHHHHHhhccccchhhhHHHHHHH-hcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHH
Q 013991           39 PITELFSIWIIVLCTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM  117 (432)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~  117 (432)
                      +.+.+..-.++.|+...........++.+..+ .|.++.+      .+...+.+..+..+|.++..++..|+...|.+..
T Consensus       234 ~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~------aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf  307 (422)
T COG0738         234 QNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQ------AAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAF  307 (422)
T ss_pred             hChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence            34555666666777766677777888877777 7888888      9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcc
Q 013991          118 GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (432)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (432)
                      ..++..+.++..+++++...++.. ++.|+..+...|. .+...+..|+  .....+..-.+..+|+++-|.+.|++.|
T Consensus       308 ~a~~~ill~~~~~l~~g~v~~~~l-~~ig~F~simfPTIfslal~~l~~--~ts~~s~~l~maivGGAiiP~l~G~i~d  383 (422)
T COG0738         308 YALIAILLLLAVALIGGVVALYAL-FLIGLFNSIMFPTIFSLALKNLGE--HTSVGSGLLVMAIVGGAIIPPLQGVIAD  383 (422)
T ss_pred             HHHHHHHHHHHHHHhcChHHHHHH-HHHHHHhHHHHHHHHHHHHhccCc--cccccceeeeeheecchHHHHHHHHHHH
Confidence            999999999999999886665544 5678877777775 8888888882  3334445555667889999999999998

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.51  E-value=4e-07  Score=63.74  Aligned_cols=80  Identities=16%  Similarity=0.278  Sum_probs=73.8

Q ss_pred             hhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHhhh
Q 013991           53 TALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS  132 (432)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~  132 (432)
                      .++++..+.|.+|.+++|.++|.++      .|++.+...+|+.+|++...++.++..+++.+..+.+...+..+.+++.
T Consensus         4 mGigRFayTplLP~M~~~~~ls~~~------ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~   77 (85)
T PF06779_consen    4 MGIGRFAYTPLLPLMQADGGLSLSQ------AGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT   77 (85)
T ss_pred             hhhHHHHHHhHhHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566778899999999999999999      9999999999999999999999999888999999999999999999999


Q ss_pred             hhHHHH
Q 013991          133 VNFWMA  138 (432)
Q Consensus       133 ~~~~~l  138 (432)
                      ++.+..
T Consensus        78 ~~~~~w   83 (85)
T PF06779_consen   78 HSFWLW   83 (85)
T ss_pred             hchHHH
Confidence            887654

Note that many members are hypothetical proteins.

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.50  E-value=4e-06  Score=67.04  Aligned_cols=108  Identities=20%  Similarity=0.186  Sum_probs=91.1

Q ss_pred             HHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhccchhhH-Hhhhhhhccc
Q 013991           87 VGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFRE  165 (432)
Q Consensus        87 ~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~  165 (432)
                      -.++......+++++.+.+.+++|.|+.++++.+++.+-.... +-++.+.++.+-++.|++.+..+++ ..++.+..++
T Consensus        42 slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~  120 (156)
T PF05978_consen   42 SLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTE  120 (156)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCH
Confidence            3455566677888899999999999999999999988766554 4566788899999999999999997 8899999999


Q ss_pred             chhhhhhhhHHHHHHHHHHHHHHHHhhhcc
Q 013991          166 EHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (432)
Q Consensus       166 ~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (432)
                      ++|++..+++-.....+.++|.++.-.+.+
T Consensus       121 ~~~~~~~~ifw~i~~~s~i~G~~~~~~~~~  150 (156)
T PF05978_consen  121 ETIGRNTGIFWAIFQSSLIFGNLFLFFIFQ  150 (156)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999988888888888887766543

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.47  E-value=5.4e-06  Score=79.35  Aligned_cols=187  Identities=16%  Similarity=0.021  Sum_probs=123.1

Q ss_pred             hhHHHHHHHHHHhhccccchhhhHHHH-HH-HhcCCcccc----chhhhhhHHHHHHhHHHHHHHHhhhhhhhccCC-hH
Q 013991           41 TELFSIWIIVLCTALPISSLFPFLYFM-IK-DFQIAKREE----DIGSYAGYVGSSFMFGRALTSVFWGLVADRYGR-KP  113 (432)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~s~~~~----~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Gr-r~  113 (432)
                      +.+..+++.+++.-++...+.....++ .+ -++.++.+.    +....-.+....+.+...+.+++.-++.+|+|+ |+
T Consensus       258 ~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~  337 (477)
T TIGR01301       258 RPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKR  337 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence            345566777777777665555554433 33 344433221    110112344444555555777888889999995 77


Q ss_pred             HHHHHHHHHHHHHHHHhhhhh---------------------HHHHHHHHHHHhhhccchhhH-Hhhhhhhccc--chhh
Q 013991          114 VIIMGTASVVIFNTLFGLSVN---------------------FWMAVLTRFLLGSLNGLLGPI-KAYACEIFRE--EHQA  169 (432)
Q Consensus       114 ~l~~~~~~~~~~~~~~~~~~~---------------------~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~--~~r~  169 (432)
                      +..++.++.+++.....+.++                     .+..++...+.|+..+..... ++++++..++  ++.|
T Consensus       338 ~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G  417 (477)
T TIGR01301       338 LWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQG  417 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCc
Confidence            779998888888877775443                     266777778899988877776 9999999995  4559


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHhhhcccCCcCCCcccccccccCccchHHHHHHHHHHHH-HHHHHhhcccccC
Q 013991          170 LGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFG-VTIAAFWLPETLH  241 (432)
Q Consensus       170 ~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~  241 (432)
                      ..+|+.+.+..+.+++..+..|.+.+       .+|-+       -...+.+.++..++ ++...+.+|++++
T Consensus       418 ~~mgilN~~I~lpQii~sl~~g~~~~-------~~g~~-------~~~~~~~~gv~~~~aa~~~~~~~~~~~~  476 (477)
T TIGR01301       418 LSMGVLNLAIVIPQIIVSLGSGPWDQ-------LFGGG-------NLPAFVVGAVAAFVSGLLALILLPRPRV  476 (477)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHH-------HcCCC-------CeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            99999999999999999988888655       23211       22234555665555 4455667776543

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.47  E-value=2.5e-06  Score=83.28  Aligned_cols=141  Identities=6%  Similarity=-0.077  Sum_probs=97.7

Q ss_pred             Cccccccchh-HHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHH-h
Q 013991          274 PKKSLLKNWP-LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI-L  351 (432)
Q Consensus       274 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~-~  351 (432)
                      ...+.+++|+ ++......++..+.......+++.|+++.     +|++..+++.............. .+++++.|| +
T Consensus        12 ~~~~~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~-----lg~s~~~a~~~~~~~~~~~~~~~-~~~G~LaDr~~   85 (500)
T PRK09584         12 VSLNAFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQ-----LGMSEADSITLFSSFSALVYGLV-AIGGWLGDKVL   85 (500)
T ss_pred             CChhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcc
Confidence            3445566664 66677777777778788888899998765     78998888777766554444443 588999999 5


Q ss_pred             ChhHHHHHHHHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccc--hhhhhhHHH
Q 013991          352 GPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVL--TYTLSCHFW  425 (432)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~g~~~~~~~  425 (432)
                      |+|+.+.++.++..++..++.+.....     ..+.+...+.+.+.+...|...++..+..|+++  +..+.+.++
T Consensus        86 G~r~~~~~g~~~~~ig~~l~~~~~~~~-----~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~  156 (500)
T PRK09584         86 GTKRVIMLGAIVLAIGYALVAWSGHDA-----GIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYY  156 (500)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhcccH-----HHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHH
Confidence            999999999888888776665432211     123344445566666677888888999887653  344555544

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.44  E-value=6.2e-06  Score=77.34  Aligned_cols=137  Identities=11%  Similarity=0.046  Sum_probs=89.7

Q ss_pred             cccchhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhChhHHH
Q 013991          278 LLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVA  357 (432)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  357 (432)
                      ++.++......+...+..+......+++--++++      ++-.+..-|......-.+-++. .+...++.+|+|+.+++
T Consensus       367 ~~~s~~~llff~~av~mG~g~~lv~tFLfWHled------~~~~~~LfGv~~a~~~~gEI~~-~ffs~klI~kiGHv~v~  439 (618)
T KOG3762|consen  367 VFASPHILLFFFVAVVMGAGVGLVFTFLFWHLED------LGGIKTLFGVVSALCHAGEILF-YFFSFKLIEKIGHVNVM  439 (618)
T ss_pred             HhcCCCEEehhHHHHHHHHHHHHHHHHHHHHHhh------cCCcceeeeehhhhhccchHHH-HHHHHHHHHHhccccee
Confidence            4455554444444444333333333333223333      4555666664444444444443 46788999999999999


Q ss_pred             HHHHHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHHHH
Q 013991          358 RIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWFV  427 (432)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~  427 (432)
                      .+++....+=++.+.+..+.+      ..+..-++.+...+..+.+.-++++..+|++.+.++.+++.-.
T Consensus       440 ~lgLa~~~~Rf~~~S~L~n~W------~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~  503 (618)
T KOG3762|consen  440 YLGLACNVGRFLYYSYLQNPW------MVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGI  503 (618)
T ss_pred             eehhhHHHHHHHHHHHhcCch------heeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHH
Confidence            988888777777766554433      4555667777888889999999999999999999999887644

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.43  E-value=3.5e-06  Score=80.36  Aligned_cols=148  Identities=8%  Similarity=-0.011  Sum_probs=90.8

Q ss_pred             hhHHHHHHHHHHhhccccchhhhHHHHH-HHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHH
Q 013991           41 TELFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (432)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~  119 (432)
                      +.++...+...+............|.+. +.+|.+..+      .++.......+..+++.+.+.+.+|.++++.+....
T Consensus       218 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~------~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~  291 (413)
T PRK15403        218 RLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQ------FAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAV  291 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHH
Confidence            3444333333333333344444557555 456899888      899888888888888888888775555544433222


Q ss_pred             HHHHHHHHHHh-----hhhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhh
Q 013991          120 ASVVIFNTLFG-----LSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL  193 (432)
Q Consensus       120 ~~~~~~~~~~~-----~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  193 (432)
                      .+..++..+..     ..++++..++..++.++|.+...+. .. .+..-....+|++.++.+.....+..+++..++++
T Consensus       292 ~~~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~p~~~~-~al~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~  370 (413)
T PRK15403        292 PIQLVGLALLIVGNLLWPHVWLWSVLGTSLYAFGIGLIFPTLFR-FTLFSNNLPKGTVSASLNMVILMVMAVSVEIGRWL  370 (413)
T ss_pred             HHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHhHHHHH-HHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22222322222     1233444566777788887776664 32 22222333579999999888888889999999988


Q ss_pred             cc
Q 013991          194 AQ  195 (432)
Q Consensus       194 ~~  195 (432)
                      .+
T Consensus       371 ~~  372 (413)
T PRK15403        371 WF  372 (413)
T ss_pred             HH
Confidence            75

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.39  E-value=3.9e-06  Score=81.59  Aligned_cols=134  Identities=9%  Similarity=-0.050  Sum_probs=99.7

Q ss_pred             hhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHH-hChhHHHHHH
Q 013991          282 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI-LGPIMVARIA  360 (432)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~  360 (432)
                      +.++......+...+.+++...+++.|+++.     +|++..+++.+.........+.. +++++++|| +|||+++.++
T Consensus        14 ~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~-----lg~~~~~a~~i~~~~~~~~~~~~-~~~G~laDr~~G~r~~~~~g   87 (489)
T PRK10207         14 RPFFMIFFVELWERFGYYGVQGILAVFFVKQ-----LGFSQEQAFITFGAFAALVYGLI-SIGGYVGDHLLGTKRTIVLG   87 (489)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHH-hhHHHhhhhccchHHHHHHH
Confidence            4455556666667778888888888888776     78899888888777776666665 589999999 9999999999


Q ss_pred             HHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccc--hhhhhhHHHH
Q 013991          361 GVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVL--TYTLSCHFWF  426 (432)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~g~~~~~~~~  426 (432)
                      .++..++.+.+.+.....     ..+++...+.+.+.+...|...+++.+.+|+++  |+++.+.++.
T Consensus        88 ~~~~~~g~~~~~~~~~~~-----~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~  150 (489)
T PRK10207         88 AIVLAIGYFMTGMSLLKP-----DLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYM  150 (489)
T ss_pred             HHHHHHHHHHHHHhccch-----hHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHH
Confidence            999988877766543222     123344555667778888888999999998774  4666665553

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=98.37  E-value=4.1e-06  Score=74.04  Aligned_cols=312  Identities=13%  Similarity=0.016  Sum_probs=178.0

Q ss_pred             HHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhccchhhHHhhhhhhcccchhhhhh
Q 013991           93 FGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGL  172 (432)
Q Consensus        93 ~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~~~~i~~~~~~~~r~~~~  172 (432)
                      -.+.+.-.+.=.+.|-.-.|++++.-.+.......+..+.++.+.+-+.-++.|...+.-.+-++++-+..+|+++.++.
T Consensus        53 YSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tAaEIAYysYIYs~Vd~~~Yqrvt  132 (433)
T KOG3810|consen   53 YSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATAAEIAYYSYIYSKVDPEMYKRVT  132 (433)
T ss_pred             HHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHHHHHhhhheeeeecCHHHHHHHH
Confidence            33445555666789999899999888888888888888899999988888888886555444489999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHhhhcccCCcCCCcccccccccCccchHHHHHHHHHHHHHHHHHhhcccccCCCCCCCcchhh
Q 013991          173 STVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDV  252 (432)
Q Consensus       173 ~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~  252 (432)
                      +...++.-.|-..|..++..+....              ..++...-.+......+..+..+++|..++..-.+.++.+.
T Consensus       133 ~y~RaA~L~g~~~g~vlaQlLvs~~--------------~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~~~~~~~  198 (433)
T KOG3810|consen  133 GYCRAAFLVGKFVGSVLAQLLVSLE--------------TLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFHRLEDKI  198 (433)
T ss_pred             HHhHHHHHHHhHHHhHHHHHHhhhc--------------ccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhhcccccc
Confidence            9999999999999999998888621              22233333444444444555566777655321111111111


Q ss_pred             hHHHhhhhhh--hhhh----hhccCCCCccccccchhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhh
Q 013991          253 SYDALESASA--EVKE----EEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVG  326 (432)
Q Consensus       253 ~~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g  326 (432)
                      ...+.++...  +..+    ....-.....+..+||.++.-.+-+.+....+....++.. .+.....   -+-.....|
T Consensus       199 ~v~~~e~~~~~~~~~~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~nY~Q-~LW~~~~---~~~~~vyNG  274 (433)
T KOG3810|consen  199 SVGDLEEMNPQASYMSYLRGAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVTNYTQ-ILWKEVA---PNPANVYNG  274 (433)
T ss_pred             eeccchhcCccchhhHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHHHHHH-HHHHhhC---CCchhhhcC
Confidence            1011111111  0000    0001111233445566554443333333322222222211 1111100   011233456


Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHhChhHHHH--HHHHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHH
Q 013991          327 EVLAITGFSLLVFQLSLYPFLERILGPIMVAR--IAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGL  404 (432)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (432)
                      ..=++..+.++++. +..|.+.-++.|..-+.  ++.+..+..++++....+.      ++.++..++.........+..
T Consensus       275 ~veAv~tlLGa~~~-~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~~I------w~~Ya~yvlfr~~y~l~itiA  347 (433)
T KOG3810|consen  275 AVEAVSTLLGAIAA-LAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQHI------WVCYAGYVLFRVIYQLTITIA  347 (433)
T ss_pred             HHHHHHHHHHHHHH-HHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcccce------ehhhhhHHHHHhhHhhhhhHH
Confidence            66666677777776 47777766665553333  3333333333333222221      244555555555555666777


Q ss_pred             HHHHhccccccchhhhhhHHHHHhh
Q 013991          405 FILQNRAVVRVLTYTLSCHFWFVKL  429 (432)
Q Consensus       405 ~~~~~~~~p~~~~g~~~~~~~~~~~  429 (432)
                      ..-+++...++.-|-..|+..|+-+
T Consensus       348 ~~~iA~nL~~e~~gLvFGiNTFvAl  372 (433)
T KOG3810|consen  348 TFQIARNLSSELFGLVFGINTFVAL  372 (433)
T ss_pred             HHHHHHhhhhhhheeeeehHHHHHH
Confidence            7777788888888988888887755

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.35  E-value=1.3e-06  Score=60.71  Aligned_cols=70  Identities=23%  Similarity=0.529  Sum_probs=60.2

Q ss_pred             HHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHH
Q 013991           46 IWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (432)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~  121 (432)
                      +-...++.....+...|.+|.+.++.|.+..+      +|.+.++..+...++++++|.++||+++++.++.....
T Consensus         5 lk~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~------iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~   74 (77)
T PF12832_consen    5 LKAFYFFYFAALGCLYPFLPLYLKQLGLSPSQ------IGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF   74 (77)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHhhhhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence            34455666667778889999999999999999      99999999999999999999999999998887765544

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.33  E-value=2e-05  Score=77.49  Aligned_cols=136  Identities=15%  Similarity=0.157  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHH
Q 013991           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV  122 (432)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~  122 (432)
                      +....+..+....+.+....+.+.+.+..|.+.+.       .....+..+...++..+...+.||+|||+.++.+...+
T Consensus       297 ~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-------~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m  369 (513)
T KOG0254|consen  297 IIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-------FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGM  369 (513)
T ss_pred             HHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-------HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHH
Confidence            33455555556666677777778888888877542       23444455556677777799999999999999999999


Q ss_pred             HHHHHHHhhhhhH-----------HHH--HH-HHHHHhhhccchhhHHhhhhhhcccchhhhhhhhHHHHHHHHHHH
Q 013991          123 VIFNTLFGLSVNF-----------WMA--VL-TRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLII  185 (432)
Q Consensus       123 ~~~~~~~~~~~~~-----------~~l--~~-~r~~~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~  185 (432)
                      .++.++.+.....           ..+  .. .-.+..+..+.......+.+|.+|.+.|+++.++......+...+
T Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~  446 (513)
T KOG0254|consen  370 SICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFL  446 (513)
T ss_pred             HHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHH
Confidence            9999888764221           111  11 112222333333333678899999999999988876555544433

>TIGR00806 rfc RFC reduced folate carrier

Probab=98.30  E-value=2.5e-05  Score=73.45  Aligned_cols=102  Identities=11%  Similarity=-0.017  Sum_probs=88.8

Q ss_pred             cccccch-hhHHHHHHHHHHHHHHHHhHHHHHHHhChhHHHHHHHHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhh
Q 013991          318 LNYSTQM-VGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLL  396 (432)
Q Consensus       318 ~g~s~~~-~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (432)
                      +|++..+ .|.+.+.+..+..+.. +.++++.||+|.|+.+.++.+...+..++.++.....      .+.+.-++.|++
T Consensus        56 lglT~~qv~G~I~s~F~ysYal~q-Ip~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~------~L~i~R~llGva  128 (511)
T TIGR00806        56 LNFTEETVTNEIIPVLPYSHLAVL-VPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVW------HMQLMEVFYSVT  128 (511)
T ss_pred             cCCCHHHhcchHHHHHHHHHHHHH-HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Confidence            7999999 9999999999999998 5899999999999999999999888888887765433      466677778888


Q ss_pred             hhhHHHHHHHHHhccccccchhhhhhHHHHH
Q 013991          397 SVSIITGLFILQNRAVVRVLTYTLSCHFWFV  427 (432)
Q Consensus       397 ~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~  427 (432)
                      .+..+ ....++.+.+|+++|+++++.+...
T Consensus       129 EA~~~-A~~syI~~WfP~kER~ratsi~~sg  158 (511)
T TIGR00806       129 MAARI-AYSSYIFSLVPPSRYQRAAAYSRAA  158 (511)
T ss_pred             HHHHH-HHHHHHHHHCCHHHHHHHHHHHHHH
Confidence            88888 9999999999999999999887643

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PTZ00207 hypothetical protein; Provisional

Probab=98.29  E-value=8.6e-06  Score=79.79  Aligned_cols=183  Identities=11%  Similarity=0.072  Sum_probs=126.6

Q ss_pred             hhHHHHHHHHHHhhccccchhhhHHHHHHHh-cCCccccchhhhhhH-HHHHHhHHHHHHHHhhhhhh---hc------c
Q 013991           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDF-QIAKREEDIGSYAGY-VGSSFMFGRALTSVFWGLVA---DR------Y  109 (432)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~-~~s~~~~~~~~~~~~~G~l~---dr------~  109 (432)
                      ..+|+++...++.......+...+.++.+.+ |.+.+++     ... +++.+.++..+|.+..|.+.   .|      +
T Consensus       353 ~d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~-----~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~  427 (591)
T PTZ00207        353 ARLWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDA-----LNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRV  427 (591)
T ss_pred             hhHHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCcc-----ceeeehhhhhHHHHhhHHHHHHHHHHHHhhcccccc
Confidence            4567777777777666666666777888888 6633221     122 67777777788888777766   22      2


Q ss_pred             CChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHH-H
Q 013991          110 GRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIG-P  187 (432)
Q Consensus       110 Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g-~  187 (432)
                      .|--.+.+..+ +.++.+++++.-....+++..++.|++.|...++ ...++|+|. |+-|+-.........+|..+- -
T Consensus       428 prt~~l~~~~~-~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~  505 (591)
T PTZ00207        428 PITIALFIPSV-CIITMLTLFLTLPKAALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNR  505 (591)
T ss_pred             chhHHHHHHHH-HHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHH
Confidence            22223344444 6666666665543368999999999999999886 889999999 888998888888888888765 5


Q ss_pred             HHHhhhcccCCcCCCcccccccccCccchHHHHHHHHHHHHHHHHH
Q 013991          188 ALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAA  233 (432)
Q Consensus       188 ~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (432)
                      .+.|.+.+.-..   ..|-....++..++.++++.+..++...+..
T Consensus       506 ~l~G~~Yd~ea~---k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s  548 (591)
T PTZ00207        506 LLYGEWYTQQAD---KLGQDVCTERVCVVMPLAFLLGLSFLAFITS  548 (591)
T ss_pred             HHHHHHHHHHHh---hCCCCeeCCceeeHhHHHHHHHHHHHHHHHH
Confidence            667777653211   1233456668889999999988887755543

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.26  E-value=3.5e-06  Score=77.71  Aligned_cols=103  Identities=10%  Similarity=0.034  Sum_probs=90.6

Q ss_pred             cccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhChhHHHHHHHHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhh
Q 013991          318 LNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLS  397 (432)
Q Consensus       318 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (432)
                      +|.+....|++.....+...+++ ++.+++.||++|++++.+|..+-.++.+..++....      +.+.+.=.+.|.+.
T Consensus        63 fni~~s~~Gll~~vf~v~~~i~s-Pl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~F------wq~~l~R~~vGiGe  135 (493)
T KOG1330|consen   63 FNISDSELGLLQTVFIVVFMIAS-PLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHF------WQVLLCRGFVGIGE  135 (493)
T ss_pred             cCCCchhccchhHHHHHHHHHHH-HHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHH------HHHHHHHHHhccch
Confidence            78999999999999999999998 799999999999999999998888877777666333      34566667788899


Q ss_pred             hhHHHHHHHHHhccccccchhhhhhHHHHH
Q 013991          398 VSIITGLFILQNRAVVRVLTYTLSCHFWFV  427 (432)
Q Consensus       398 ~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~  427 (432)
                      +...|...++++|.+|+++|+++.++||+.
T Consensus       136 As~~~ia~s~IaD~f~~~~Rs~~~~ify~~  165 (493)
T KOG1330|consen  136 ASYSPIAPSLIADSFPDDKRSRVLGIFYFA  165 (493)
T ss_pred             hhhcccchhHhhhcCcchhhhHHHHHhhhh
Confidence            999999999999999999999999999985

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=98.21  E-value=0.00021  Score=67.03  Aligned_cols=365  Identities=15%  Similarity=0.100  Sum_probs=171.2

Q ss_pred             HHHHHHHHHhhccccchhhhHHHHHHH--hcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhh-----ccCChHHHH
Q 013991           44 FSIWIIVLCTALPISSLFPFLYFMIKD--FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD-----RYGRKPVII  116 (432)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~d-----r~Grr~~l~  116 (432)
                      ..+.+.+++.++..+......|.+.++  -+.|.+|+-.-..+.+-.|        .-++|.++.|     |+||||.-+
T Consensus         3 ~lL~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla~~PfS--------lKlLWaPiVDs~y~~~~GRRKSWi   74 (544)
T PF13000_consen    3 ALLVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLASYPFS--------LKLLWAPIVDSVYSKRIGRRKSWI   74 (544)
T ss_pred             eHHHHHHHHcCcccccccccchhhhccccCCCChhHheeeeeeechhH--------HHHhhhhhhhhhcccccCCcchhh
Confidence            456677888888888777788988888  7888887222122222222        2345555555     899998765


Q ss_pred             HHH-HHHHHHHHHHhhhh------------------------hHHHHHHHHHHHhhhccchhh-HHhhhhhhcccchhhh
Q 013991          117 MGT-ASVVIFNTLFGLSV------------------------NFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQAL  170 (432)
Q Consensus       117 ~~~-~~~~~~~~~~~~~~------------------------~~~~l~~~r~~~G~~~g~~~~-~~~~i~~~~~~~~r~~  170 (432)
                      +-. .+.++..+..+...                        +...+....++.=+-.+..-. +-...-....+++++.
T Consensus        75 iP~Q~l~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~  154 (544)
T PF13000_consen   75 IPIQYLSGILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGY  154 (544)
T ss_pred             hHHHHHHHHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcch
Confidence            432 22222222221111                        011122222222222222222 3444444556788887


Q ss_pred             hhhhHHHHHHHHHHHHHHHHhhhcccC--Cc----CCCcccccccccCccchHHHHHHHHHHHHHHHHHhhcccccCCCC
Q 013991          171 GLSTVSTAWGIGLIIGPALGGFLAQPA--EK----YPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHN  244 (432)
Q Consensus       171 ~~~~~~~~~~~g~~~g~~~~~~l~~~~--~~----~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  244 (432)
                      +......+.+.|..++..+--.+.+..  ..    .|...|.-..   .++ . .+...+..++...+.++-+|.+....
T Consensus       155 ASTcqtvG~~~Gyfls~tvFlalns~~f~Nky~r~~p~~~glvtl---~~y-l-~fwg~~~l~~T~~v~~~k~E~~~~~~  229 (544)
T PF13000_consen  155 ASTCQTVGQTAGYFLSFTVFLALNSPDFCNKYLRSTPSDEGLVTL---SGY-L-KFWGWVFLIVTILVAFFKKEKPHSES  229 (544)
T ss_pred             HHHHHHhHhhhhHHHHHHHHHhhCCHHHHHHhcccCCCCCCeeeH---HHH-H-HHHHHHHHHHHHHHheEeeccccccc
Confidence            777777777777777665544444311  00    1111111100   001 0 01112222233344455555543221


Q ss_pred             CCC-cc---hhhhHHH--hhhhhhh--hhhh---hccCCCCccccccchhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCC
Q 013991          245 DDD-DS---CDVSYDA--LESASAE--VKEE---EGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPK  313 (432)
Q Consensus       245 ~~~-~~---~~~~~~~--~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (432)
                      ..+ +.   .+...++  .+..+++  ..++   .++.-+....++|-|++..+++.....-+.+.+......+=+.+  
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Y~~l~~ilkLp~V~~li~ilL~~KigF~a~da~T~LKLlE--  307 (544)
T PF13000_consen  230 LPKIEPINKSDGKSKEISIEYDESDVISTEEILSIKDVYKSLWKILKLPNVQTLIIILLTAKIGFQANDAVTSLKLLE--  307 (544)
T ss_pred             CccccccccccccccccceecccccccchhhhhhHHHHHHHHHHHHcCchHHHHHHHHHHHHhccccchhhhHHHHHH--
Confidence            110 00   0000000  0000000  0000   11112234456778888888777777666666665555544444  


Q ss_pred             cCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhCh--------------------------hHHHHHHHHHHHHH
Q 013991          314 KLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGP--------------------------IMVARIAGVLTIPL  367 (432)
Q Consensus       314 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~--------------------------~~~~~~~~~~~~~~  367 (432)
                          .|++.+..+.+..+..=..++....++.|..++-..                          .+....+...-.+.
T Consensus       308 ----kG~~KE~LAl~~li~~P~qii~~~~~~Kws~g~~P~~~~~~~l~~~~~~~~~~~~l~g~~g~L~~Wl~af~gRL~~  383 (544)
T PF13000_consen  308 ----KGLSKEDLALLVLIDFPFQIILPYYIGKWSAGSPPLDVDNKALPNFSRANKIIRLLVGDAGALRPWLWAFWGRLVA  383 (544)
T ss_pred             ----cCCCHHHhHHHHHHhhhHHHHHHHHhhhhhcCCCccccccccccccccccchhhhhhccchhhHHHHHHHHHHHHH
Confidence                588888877655444333333333333333222110                          01111222111111


Q ss_pred             ----HHHhhHHHhhh--hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHHHH
Q 013991          368 ----LTSYPYIAMLS--GFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWFV  427 (432)
Q Consensus       368 ----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~  427 (432)
                          .......+...  ....+.++.+.-.+..+.....+....++-+++.+|.--|+..+..+++
T Consensus       384 a~l~~~iV~~fP~~g~v~~~Yf~lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTv  449 (544)
T PF13000_consen  384 ALLAQLIVYFFPSDGPVPTYYFLLVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTV  449 (544)
T ss_pred             HHHHHheEEeCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHH
Confidence                11111111001  1123444555556666777777888889999999999999998888765

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.21  E-value=3.2e-06  Score=81.12  Aligned_cols=140  Identities=11%  Similarity=0.058  Sum_probs=89.0

Q ss_pred             hHHHHHHHHHHhhccccchhhhHHHHHHH-hcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhc----cCChHHHH
Q 013991           42 ELFSIWIIVLCTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR----YGRKPVII  116 (432)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr----~Grr~~l~  116 (432)
                      .++...+..++.....+.....+|.+.++ .|.+..+      .+.+...+.++.+++.+++|+++||    ..+|....
T Consensus       274 ~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~------a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~  347 (495)
T KOG2533|consen  274 GVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQ------ANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFI  347 (495)
T ss_pred             hHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHH------hccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            45567778888888888899999988887 5678888      8999999999999999999999999    66676666


Q ss_pred             HHHHHHHHHH-HHHhhhhhHHHHHHHHHHHhhhccchhhH-Hhhhhhhcccchh-hhhhhhHHHHHHHHHHHHH
Q 013991          117 MGTASVVIFN-TLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQ-ALGLSTVSTAWGIGLIIGP  187 (432)
Q Consensus       117 ~~~~~~~~~~-~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r-~~~~~~~~~~~~~g~~~g~  187 (432)
                      ....+..+.. +......+......+-.....+.+...+. .....+...+..| -...+....+.+.+..++|
T Consensus       348 ~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~  421 (495)
T KOG2533|consen  348 VFLCLYAIIGAISLLAAAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISG  421 (495)
T ss_pred             HHHHHHHHHHHHHHHhhccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhh
Confidence            6655554444 44433332333222222222233344443 6666666654443 3344444444444444333

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.09  E-value=2.7e-05  Score=76.00  Aligned_cols=195  Identities=18%  Similarity=0.155  Sum_probs=130.6

Q ss_pred             hhHHHHHHHHHHhhccccchhhhHHHHHH-HhcCCcc---ccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCC-hHHH
Q 013991           41 TELFSIWIIVLCTALPISSLFPFLYFMIK-DFQIAKR---EEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGR-KPVI  115 (432)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~---~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Gr-r~~l  115 (432)
                      |.+....+..++.++.......+.|.... -++.+..   +      .++....+.++..+++.+.|.+..+++| |+.+
T Consensus       310 r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~------~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~l  383 (599)
T PF06609_consen  310 RGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITE------IGWISSPVGFGSCAGAVILGLLFSKIRHIKWQL  383 (599)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccce------eehhhhhHHHHHHHHHHHHHHHHHHccchhHHH
Confidence            44445556666666666655566665443 4554442   4      6788888889999999999999999887 6666


Q ss_pred             HHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHhhhccchhh-HHhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhh
Q 013991          116 IMGTASVVIFNTLFGLS--VNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGF  192 (432)
Q Consensus       116 ~~~~~~~~~~~~~~~~~--~~~~~l~~~r~~~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  192 (432)
                      +++.++..+++.+++..  +|....+..-++.|++.|.... ......-..|+++-+.+.++....-.+|+.+|..+..-
T Consensus       384 i~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~  463 (599)
T PF06609_consen  384 IFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNA  463 (599)
T ss_pred             HHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            77777777655555443  4555556667788888776654 46666677888999999999999888888887766543


Q ss_pred             hcccC-C--------------cC-----------------------CCc---------ccccccccCccchHHHHHHHHH
Q 013991          193 LAQPA-E--------------KY-----------------------PNL---------FSSESLFGKFPYFLPCLCISLF  225 (432)
Q Consensus       193 l~~~~-~--------------~~-----------------------~~~---------~gw~~~~~~~~~~~~~~~~~~~  225 (432)
                      +.... .              +.                       |..         ..-+..| ..+++.+++.....
T Consensus       464 I~~n~~~~~l~~~v~~a~~~aglp~~sl~~li~a~~~~~~~a~~~iPGit~~i~~a~~~A~~~aY-a~ay~~V~~~siaF  542 (599)
T PF06609_consen  464 IFTNKLPKELPKYVAPAALAAGLPESSLPALIEALAAGNLEALAAIPGITPEIIAAVVAAFQEAY-AHAYRYVYYSSIAF  542 (599)
T ss_pred             HHHhhhhHhHHHHHHHHHHhcCCChhhHHHHHHHHhccChhHHhhCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            32110 0              00                       000         0112334 56688888888888


Q ss_pred             HHHHHHHHhhcccccCC
Q 013991          226 AFGVTIAAFWLPETLHR  242 (432)
Q Consensus       226 ~~~~~~~~~~~~e~~~~  242 (432)
                      +.+.++..+++++..+.
T Consensus       543 G~vaiiaa~fl~d~~~~  559 (599)
T PF06609_consen  543 GVVAIIAALFLGDIDKY  559 (599)
T ss_pred             HHHHHHHHHHcCChHHh
Confidence            88888888888876543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=98.05  E-value=0.00051  Score=65.96  Aligned_cols=259  Identities=14%  Similarity=0.144  Sum_probs=138.4

Q ss_pred             hhHHHHHHhH-HHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHhhh---------h--------------------
Q 013991           84 AGYVGSSFMF-GRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS---------V--------------------  133 (432)
Q Consensus        84 ~~~~~s~~~~-~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---------~--------------------  133 (432)
                      +..+-....+ ...+......++++|++|.+++-+....+.....++++.         +                    
T Consensus        60 I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~  139 (491)
T PF03219_consen   60 IPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIA  139 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHH
Confidence            4455443333 345567789999999999999877766666665555531         0                    


Q ss_pred             --hHHHHHHHHHHHhhhccc-hhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcc-cCCcCCCcccccc
Q 013991          134 --NFWMAVLTRFLLGSLNGL-LGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ-PAEKYPNLFSSES  208 (432)
Q Consensus       134 --~~~~l~~~r~~~G~~~g~-~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-~~~~~~~~~gw~~  208 (432)
                        +.|...+..+..-+-+.. .... ..+..|.++.+|-.|..++++.+.++|.++++.+..++.+ .....+.      
T Consensus       140 ~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~------  213 (491)
T PF03219_consen  140 MFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPA------  213 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc------
Confidence              123333444444442223 3334 8899999999999999999999999999999888888876 1111100      


Q ss_pred             cccCccchHH----HHHHHHHHHHHHHHHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhccCCCCccccccchhH
Q 013991          209 LFGKFPYFLP----CLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPL  284 (432)
Q Consensus       209 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (432)
                        +...|...    ..+..+.+++.+.....+.+.....+...+ .+..        ++....+..-....+.++|+|.+
T Consensus       214 --~~~~~~~~l~~l~~~v~~~g~~i~~~~~~~~~~vl~~~~~~~-~~~~--------~kk~k~k~s~~es~k~l~kS~yL  282 (491)
T PF03219_consen  214 --GVDAWELSLNSLMGIVLILGIVIILLYRYMNKNVLTDPRFYP-SAKK--------KKKKKPKMSLKESFKLLLKSKYL  282 (491)
T ss_pred             --ccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccch-hhhc--------ccccCCCccHHHHHHHHHhCHHH
Confidence              01122211    111222222222233333322111100000 0000        00000011112245667888888


Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhChhHHHHHHHH
Q 013991          285 MSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGV  362 (432)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  362 (432)
                      ....+....++.........+-......+... -.++ .-.|-.....++...+.. ++++.+.+|+|-+....+.-+
T Consensus       283 ~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~~~-~~ys-afmG~~~~~tGivtii~~-~l~~~iir~~GW~~~AlitPi  357 (491)
T PF03219_consen  283 LCIALLVIAYGISINLVEVVWKSQLKQLYPDP-NDYS-AFMGKFSSWTGIVTIIMM-FLSSNIIRRFGWRTAALITPI  357 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc-hHHH-HHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHhHH
Confidence            87777666666554444443333332221100 1111 224555666677777766 688899999998776665433

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.00  E-value=4.7e-05  Score=72.61  Aligned_cols=124  Identities=20%  Similarity=0.281  Sum_probs=108.3

Q ss_pred             HHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhh-hhhhccCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 013991           66 FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWG-LVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFL  144 (432)
Q Consensus        66 ~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G-~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~~  144 (432)
                      +....++.++.+      .+...+.......+++.+.. .+...+|-|+++.+|+..-.+....++++++.|+++....+
T Consensus       267 yl~~~f~w~~~~------~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~  340 (463)
T KOG2816|consen  267 YLKAKFGWNKKE------FSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVV  340 (463)
T ss_pred             EEeeecCcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHH
Confidence            445578999988      89888888888888888777 78888999999999999999999999999999999999988


Q ss_pred             HhhhccchhhHHhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcc
Q 013991          145 LGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (432)
Q Consensus       145 ~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (432)
                      .++.........++++.+..++++|+++++.+....+..+++|.+-+.+..
T Consensus       341 ~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~  391 (463)
T KOG2816|consen  341 VALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFA  391 (463)
T ss_pred             HHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHH
Confidence            887655555569999999999999999999999999999999999877754

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=97.95  E-value=0.013  Score=57.75  Aligned_cols=158  Identities=13%  Similarity=0.055  Sum_probs=108.2

Q ss_pred             chhHHHHHHHHHHhhccc-cchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhc-cCChHHHHH
Q 013991           40 ITELFSIWIIVLCTALPI-SSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKPVIIM  117 (432)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~l~~  117 (432)
                      |+....+.....+.-+.. +.....+.++.++++.+...      +.-..+.+.-......+..+.++|- +||-+.+.+
T Consensus        36 ~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~------aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~  109 (571)
T KOG1237|consen   36 WLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGG------AANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINI  109 (571)
T ss_pred             hHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHH------HHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            343333333333333333 34456667888999988877      7777788887778888999999996 678899999


Q ss_pred             HHHHHHHHHHHHhhhhhH-------------------------HHHHHHHHHHhhhccchhhH-Hhhhhhhcc---cch-
Q 013991          118 GTASVVIFNTLFGLSVNF-------------------------WMAVLTRFLLGSLNGLLGPI-KAYACEIFR---EEH-  167 (432)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~-------------------------~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~---~~~-  167 (432)
                      +.++..++..+..++...                         ..++.+.-+..+|.|..-+. .++-+|.++   +++ 
T Consensus       110 ~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~  189 (571)
T KOG1237|consen  110 GSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEV  189 (571)
T ss_pred             HHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchh
Confidence            988888886555432211                         23445555666677777775 888899998   322 


Q ss_pred             h--hhhhhhHHHHHHHHHHHHHHHHhhhcccCCcCCCcccccccc
Q 013991          168 Q--ALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLF  210 (432)
Q Consensus       168 r--~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~  210 (432)
                      +  ...+.++....++|..++-.+-.+.-+       ..||...|
T Consensus       190 ~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~-------~~~w~lgf  227 (571)
T KOG1237|consen  190 KGIPSFFNWFYFSQNGGALLAQTVLVYIQD-------NVGWKLGF  227 (571)
T ss_pred             hCcccchhHHHHHHHHHHHHHHHHHHhhhh-------cccceeec
Confidence            2  366777888888888888888877765       56665444

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=97.93  E-value=0.0041  Score=58.43  Aligned_cols=300  Identities=12%  Similarity=0.111  Sum_probs=160.6

Q ss_pred             chhHHHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhH-HHHHHHHhhhhhhhccCChHHHHHH
Q 013991           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMF-GRALTSVFWGLVADRYGRKPVIIMG  118 (432)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~-~~~~~~~~~G~l~dr~Grr~~l~~~  118 (432)
                      ++.++.+.+..++..+..    ..+-.+.+.+.++....   ..+.++-+..-+ +.++..++.+++.+++.|.+++-+-
T Consensus        26 ~~kflpl~Ll~f~I~~ny----~~lR~lKDslvv~~~ga---e~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~   98 (509)
T COG3202          26 LKKFLPLALLFFCILFNY----NLLRSLKDSLVVTRQGA---ESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYII   98 (509)
T ss_pred             HHHHHHHHHHHHHHHHHH----HHHHHhhhheEeecCcc---hhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence            344444444444444433    33345555565542221   016777777777 6678889999999999999999888


Q ss_pred             HHHHHHHHHHHhhh---------------h-----------------hHHHHHHHHHHHhhhccch-hhH-Hhhhhhhcc
Q 013991          119 TASVVIFNTLFGLS---------------V-----------------NFWMAVLTRFLLGSLNGLL-GPI-KAYACEIFR  164 (432)
Q Consensus       119 ~~~~~~~~~~~~~~---------------~-----------------~~~~l~~~r~~~G~~~g~~-~~~-~~~i~~~~~  164 (432)
                      +..+....+++++.               .                 +.|...+..++.-+-+... .-. .....|++.
T Consensus        99 ~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt  178 (509)
T COG3202          99 LGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITT  178 (509)
T ss_pred             HHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            87777777777652               1                 0133333333333322222 324 778899999


Q ss_pred             cchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCcCCCcccccccccCccchHHHHHHHHHHHHHHHHHhhccc----cc
Q 013991          165 EEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPE----TL  240 (432)
Q Consensus       165 ~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e----~~  240 (432)
                      .+|-.|..++++...+++..++..+..++........      ...-....+..+.+....+++.++..+++.+    .+
T Consensus       179 ~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~------~~~~~~~~~~~~~vi~~~~~i~~~l~~~~~r~il~~~  252 (509)
T COG3202         179 IEEAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALA------SEFKDLLLQILFIVIVILGIIAILLYRYINRNVLTDP  252 (509)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCc
Confidence            9999999999999999999999998888876211100      0000001233334444444444444444322    11


Q ss_pred             CCC-CCCCcchhhhHHHhhhhhhhhhhhhccCCCCccccccchhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcc
Q 013991          241 HRH-NDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLN  319 (432)
Q Consensus       241 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  319 (432)
                      ... +...++++.             ..+..-....+.+.|+|.++...+...+++.+...+...+-.-....+..  ..
T Consensus       253 ~f~~~~~~kk~~~-------------k~k~~~~~s~k~i~~SkyL~~ial~vl~Y~v~inLvE~~wKs~ik~~~~~--~~  317 (509)
T COG3202         253 LFYLRAKKKKKKK-------------KLKLGLIESFKMILRSKYLGAIALLVLAYGVSINLVEGVWKSGIKELYPT--TN  317 (509)
T ss_pred             chhHHHhcccccc-------------cccCcHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcCC--hh
Confidence            110 000000000             00001112345667778777766666555544433333222111111000  00


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHhHHHHHHHhChhHHHHHHHHHHHHH
Q 013991          320 YSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPL  367 (432)
Q Consensus       320 ~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  367 (432)
                      --..-.|......++..++.....++.+.+|.|-.....+.-++..+.
T Consensus       318 ~~~~f~~~~~~~tgvv~~v~~~~~~s~~ir~~GW~~~AlitPiv~lit  365 (509)
T COG3202         318 EYTAFMGRFQIWTGVVSLVVFLFPGSNLIRRVGWFTGALITPLVMLIT  365 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence            011223445666677756666678889999988777666555444444

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=97.91  E-value=3.5e-05  Score=60.88  Aligned_cols=90  Identities=9%  Similarity=-0.033  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHHhHHHHHHHhChhHHHHHHHHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhc
Q 013991          331 ITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNR  410 (432)
Q Consensus       331 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (432)
                      ...++..+++ +..+++.||+++|+.+..+.....++.+.........      ...+...+.+.+.+...+....+..|
T Consensus         6 ~~~~~~~~~~-~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~g~~~~~~~~~~~~~~~~   78 (141)
T TIGR00880         6 GYALGQLIYS-PLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNIT------VLIIARFLQGFGAAFALVAGAALIAD   78 (141)
T ss_pred             eehhHHHHHH-hhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHH------HHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            3455566666 5888999999999999888877777666654432211      23444556666777778889999999


Q ss_pred             cccccchhhhhhHHHHH
Q 013991          411 AVVRVLTYTLSCHFWFV  427 (432)
Q Consensus       411 ~~p~~~~g~~~~~~~~~  427 (432)
                      ..|+++|+++.+..+..
T Consensus        79 ~~~~~~~~~~~~~~~~~   95 (141)
T TIGR00880        79 IYPPEERGVALGLMSAG   95 (141)
T ss_pred             HCChhhhhHHHHHHHHh
Confidence            99999999998887654

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=97.86  E-value=0.0008  Score=66.42  Aligned_cols=141  Identities=19%  Similarity=0.145  Sum_probs=96.2

Q ss_pred             HHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHhhhhhHHH---HHHHHHHHhhhccc-hhhHHhhhhhh
Q 013991           87 VGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWM---AVLTRFLLGSLNGL-LGPIKAYACEI  162 (432)
Q Consensus        87 ~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~---l~~~r~~~G~~~g~-~~~~~~~i~~~  162 (432)
                      ................+...|++|||.....+..+..++++..+.......   ..+...+...+.+. ......+.+|.
T Consensus       355 ~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el  434 (521)
T KOG0255|consen  355 NFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAEL  434 (521)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            333333355555666689999999999999999999999999988764433   33333333333333 33348899999


Q ss_pred             cccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCcCCCcccccccccCccchHHHHHHHHHH-HHHHHHHhhcccccC
Q 013991          163 FREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFA-FGVTIAAFWLPETLH  241 (432)
Q Consensus       163 ~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~e~~~  241 (432)
                      +|...|..+.+..+....+|.+++|.+.......               .  ...++.+.+... +..++...++||+..
T Consensus       435 ~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~---------------~--~~~~~~~~~~~~~l~~~~~~~~lpet~~  497 (521)
T KOG0255|consen  435 IPTVVRNTAVGAISAAARLGSILAPLFPLLLRQM---------------F--PLLGLILFGWLALLLGLLSLLLLPETKG  497 (521)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------------c--ccchHHHHHHHHHHHHHHHHhcCcccCC
Confidence            9999999999999999999999999987655430               0  111112223333 334455588999877


Q ss_pred             CCC
Q 013991          242 RHN  244 (432)
Q Consensus       242 ~~~  244 (432)
                      ...
T Consensus       498 ~~l  500 (521)
T KOG0255|consen  498 KPL  500 (521)
T ss_pred             CCC
Confidence            655

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=97.84  E-value=0.00022  Score=66.98  Aligned_cols=133  Identities=9%  Similarity=-0.048  Sum_probs=102.3

Q ss_pred             ccccc-hhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHh-Chh
Q 013991          277 SLLKN-WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL-GPI  354 (432)
Q Consensus       277 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~-~~~  354 (432)
                      ..+++ |.++.+...-+.--+.+++....+..|++.....+ +|+|.+++.-+++.++...-+.. .++||++||+ |+|
T Consensus        15 ~~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~g-Lg~~~~~A~~l~~~y~slVY~t~-i~GG~laDr~LG~~   92 (498)
T COG3104          15 KFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDG-LGFDETHATGLFSAYGSLVYLTP-IIGGWLADRVLGTR   92 (498)
T ss_pred             ccCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccc-CCcChHhhHHHHHHHHHHHHHHH-HHHHHHHHHhcchh
Confidence            34443 45555666677777888999999999988865444 78999998888887776666665 5999999995 999


Q ss_pred             HHHHHHHHHHHHHHHHhhHHH-hhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccc
Q 013991          355 MVARIAGVLTIPLLTSYPYIA-MLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVL  416 (432)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  416 (432)
                      +.+..+.++..++.+.++... ...     ..++++..+++.+.+..=|....++.+..|+++
T Consensus        93 ~tI~lGail~~iGh~~L~~~~~~~~-----~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~D  150 (498)
T COG3104          93 RTIVLGAILMAIGHLVLAISSVSGP-----GGLYIGLALIIVGTGLFKPNISSLLGELYPKDD  150 (498)
T ss_pred             HHHHHHHHHHHHHHHHHhccccccc-----cHHHHHHHHHHhccccccccHHHHHHHhcCCCC
Confidence            999999999999988887663 111     246677777778888888999999999987654

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.73  E-value=0.00036  Score=48.56  Aligned_cols=70  Identities=17%  Similarity=0.233  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhChhHHHHHHHHH
Q 013991          287 SIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVL  363 (432)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  363 (432)
                      .-..++++.....++..++|.|..+      .|+|+.++|.+.++..+...++. ++.+.+.||.++++........
T Consensus         5 lk~~yf~~f~~~g~~~Pfl~~~~~~------~Gl~~~~iGil~~i~~~~~~~~~-pl~g~laDk~~~~~~~l~~~~~   74 (77)
T PF12832_consen    5 LKAFYFFYFAALGCLYPFLPLYLKQ------LGLSPSQIGILSAIRPLIRFLAP-PLWGFLADKFGKRKVILLGSLF   74 (77)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHhhhh------cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCccHHHHHHHHH
Confidence            4456667777777888888888876      59999999999999999999998 6999999999998887665543

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=97.71  E-value=0.0017  Score=61.14  Aligned_cols=107  Identities=16%  Similarity=0.228  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhhh---------hHHHHHHHHHHHhhhccchhhH-Hhhhhhhcccc---hhhhhhhhHHHHH
Q 013991          113 PVIIMGTASVVIFNTLFGLSV---------NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREE---HQALGLSTVSTAW  179 (432)
Q Consensus       113 ~~l~~~~~~~~~~~~~~~~~~---------~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~---~r~~~~~~~~~~~  179 (432)
                      |.++++.++..+|.++..++.         +.+.++++-.+.++|.|..-|. .++.+|.++++   +|.+.+.++..+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            567888888888888854432         2356888888999999999886 99999999865   5677888999999


Q ss_pred             HHHHHHHHHHHhhhcccCCcCCCcccccccccCccchHHHHHHHHHHHHHHHHHhh
Q 013991          180 GIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFW  235 (432)
Q Consensus       180 ~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (432)
                      ++|..+++.+.+++.+                +++|...|.+.++..+++++....
T Consensus        82 n~G~~~~~~~~~~i~~----------------~~~~~~~f~i~~~~~~~~~~~f~~  121 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQ----------------NYGWFLGFGIPAIGMLLALIVFLS  121 (372)
T ss_dssp             HHHHHHHHHCCCHHHH----------------CS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhhhHhhcccchhhcc----------------ccchhhhhhHHHHHHHHHHHHHHh
Confidence            9999999999999987                566666667777666655544433

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.66  E-value=6.2e-05  Score=75.52  Aligned_cols=114  Identities=11%  Similarity=-0.032  Sum_probs=92.8

Q ss_pred             cCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhChhHHHHHHHHHHHHHHHHhhHHHhhhh--------------
Q 013991          314 KLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSG--------------  379 (432)
Q Consensus       314 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------  379 (432)
                      ..+.++++..+.|.+.+...++.+++. ++.+++.||.+|++.+.++.++.+++.+++++.+...+              
T Consensus        59 iek~F~lss~~~G~i~s~~~i~~~~~~-i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~  137 (633)
T TIGR00805        59 IERRFKLSTSSSGLINGSYEIGNLLLI-IFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNL  137 (633)
T ss_pred             hhhhhCCCCCcceeeeehhhHHHHHHH-HHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccc
Confidence            344589999999999999999999988 58889999999999999999998888877765431100              


Q ss_pred             -------------------------------hHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHHHHh
Q 013991          380 -------------------------------FGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWFVK  428 (432)
Q Consensus       380 -------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~~  428 (432)
                                                     ...+..++++-++.|++.+..++...+++.|.+|+++|+.+.++++...
T Consensus       138 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~  217 (633)
T TIGR00805       138 SSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIA  217 (633)
T ss_pred             cccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHH
Confidence                                           1134556678889999999999999999999999999999998877653

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.63  E-value=0.00086  Score=60.74  Aligned_cols=121  Identities=14%  Similarity=0.069  Sum_probs=106.6

Q ss_pred             HHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccC--ChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh
Q 013991           69 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYG--RKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLG  146 (432)
Q Consensus        69 ~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G--rr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G  146 (432)
                      +.+|.++.+      .|-+.+...+...+.+....+..||..  -+-.+..++.+..-..++...++....+.++-.+-.
T Consensus       290 ~rfg~ss~~------~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~s  363 (451)
T KOG2615|consen  290 GRFGYSSMQ------QGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKS  363 (451)
T ss_pred             CccCCChhh------heeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHH
Confidence            568888888      888888888888899999999999988  788888888888888888888888888888888888


Q ss_pred             hhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcc
Q 013991          147 SLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (432)
Q Consensus       147 ~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (432)
                      +..+...++ ..++....|.++||..+|+......++-++||+++|.+..
T Consensus       364 f~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~  413 (451)
T KOG2615|consen  364 FSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFS  413 (451)
T ss_pred             HHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence            877777776 8889999999999999999999999999999999988876

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=97.30  E-value=0.031  Score=53.45  Aligned_cols=37  Identities=8%  Similarity=-0.171  Sum_probs=25.2

Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhH
Q 013991          387 NCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCH  423 (432)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~  423 (432)
                      .+..++.++..+-.......+..+.+++++|-.+..+
T Consensus       376 ~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~  412 (437)
T TIGR00939       376 IILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGAL  412 (437)
T ss_pred             HHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence            3345566667777777778888888888777554443

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.27  E-value=0.00047  Score=63.83  Aligned_cols=149  Identities=17%  Similarity=0.086  Sum_probs=92.7

Q ss_pred             hhHHHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCC-hHHHHHHH
Q 013991           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGR-KPVIIMGT  119 (432)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Gr-r~~l~~~~  119 (432)
                      +++.++.+...+.....+.....+......-|.+...      .|+......++.++++...|.+.||... |..+++..
T Consensus       266 ~~F~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~------aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~  339 (480)
T KOG2563|consen  266 RQFIILAICYGIGLGLFNSLSTLLNLALCPSGYEGVF------AGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLY  339 (480)
T ss_pred             ccHHHHHHHHhhhHHHHHHHHHHhhhccccccCCccc------cchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence            4444444444444444444444444344445566555      8999999999999999999999999876 55555555


Q ss_pred             HHHHHHHHHHhhhh----hHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhc
Q 013991          120 ASVVIFNTLFGLSV----NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (432)
Q Consensus       120 ~~~~~~~~~~~~~~----~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  194 (432)
                      ....++.......+    ..+.++..-.+.|.+.....|. .-+-.|..-|..-+...|+.+....+=.++-..+-+.+.
T Consensus       340 ~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~  419 (480)
T KOG2563|consen  340 LFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILA  419 (480)
T ss_pred             HHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHh
Confidence            55555532222222    2244555556777766666665 777777776666666777776666665556666666665


Q ss_pred             c
Q 013991          195 Q  195 (432)
Q Consensus       195 ~  195 (432)
                      +
T Consensus       420 ~  420 (480)
T KOG2563|consen  420 E  420 (480)
T ss_pred             h
Confidence            5

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.14  E-value=0.023  Score=45.61  Aligned_cols=91  Identities=18%  Similarity=0.094  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHhChhHHHHHHHHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 013991          329 LAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQ  408 (432)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (432)
                      .++......+.. ++.+.+.+++|.|+.+.++.+...+-.......       .+..++.+..+.|++.+......-.++
T Consensus        43 lai~Y~~~~~s~-l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~~-------~~~~l~~~s~l~G~~~a~lW~aqg~yl  114 (156)
T PF05978_consen   43 LAILYGSFAISC-LFAPSIVNKLGPKWSMILGSLGYAIYIASFFYP-------NSYTLYPASALLGFGAALLWTAQGTYL  114 (156)
T ss_pred             HHHHHHHHHHHH-HhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHhhhhHHhhHhhhHHH
Confidence            344444445555 477889999999999999888776544443221       123577788888999999999999999


Q ss_pred             hccccccchhhhhhHHHHH
Q 013991          409 NRAVVRVLTYTLSCHFWFV  427 (432)
Q Consensus       409 ~~~~p~~~~g~~~~~~~~~  427 (432)
                      .+..+++.+++-.+.+|-+
T Consensus       115 t~~s~~~~~~~~~~ifw~i  133 (156)
T PF05978_consen  115 TSYSTEETIGRNTGIFWAI  133 (156)
T ss_pred             HHcCCHHHHhhHHHHHHHH
Confidence            9999999999999988865

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=97.07  E-value=0.12  Score=47.93  Aligned_cols=34  Identities=6%  Similarity=-0.045  Sum_probs=23.1

Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHhccccccchhh
Q 013991          386 LNCASVVKNLLSVSIITGLFILQNRAVVRVLTYT  419 (432)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~  419 (432)
                      ..+...+.++..+-.......+..+.+|++++-.
T Consensus       346 ~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~  379 (406)
T KOG1479|consen  346 FIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEA  379 (406)
T ss_pred             HHHHHHHHHhccchHhhheehhcCCCCChHHHHH
Confidence            3444555666777777788888888887766543

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.03  E-value=0.015  Score=54.17  Aligned_cols=107  Identities=17%  Similarity=0.264  Sum_probs=73.2

Q ss_pred             hhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHH-----HHHHHHhhhhhHHHHHHHHHHHhhhccchhh-HHh
Q 013991           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVV-----IFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKA  157 (432)
Q Consensus        84 ~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~-----~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~-~~~  157 (432)
                      ..+....|.+|-.++.--...+  |+  |++.+.+.+-..     +....+-+.++.|.+++.-+..|+.+|...+ ...
T Consensus       283 Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~  358 (402)
T PF02487_consen  283 YRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFY  358 (402)
T ss_pred             HHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            6677777777665554322211  33  333333322222     2222333467888888888999997777666 477


Q ss_pred             hhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhc
Q 013991          158 YACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (432)
Q Consensus       158 ~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  194 (432)
                      .+.|-.++++|..+++..+.+-++|..++.+++-.+-
T Consensus       359 ~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le  395 (402)
T PF02487_consen  359 RISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE  395 (402)
T ss_pred             HHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            7788889999999999999999999999988886654

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=96.99  E-value=0.23  Score=44.52  Aligned_cols=72  Identities=15%  Similarity=0.193  Sum_probs=52.0

Q ss_pred             hHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhccchhhH-Hhhhhhhcc
Q 013991           92 MFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFR  164 (432)
Q Consensus        92 ~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~  164 (432)
                      .+..+..+++.+.+.+++|-|+.+.++...+...... -+-+.+..++-+-...|++.+..+.. -+|+++.-.
T Consensus        68 y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~-Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~  140 (390)
T KOG3097|consen   68 YLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIAA-NLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQ  140 (390)
T ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh-hcchhHHhhccHHHhhccccccccccCcceecHHHH
Confidence            3444566666668999999999999887776654322 23456788888899999998887776 666665543

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=96.98  E-value=0.004  Score=54.27  Aligned_cols=104  Identities=16%  Similarity=-0.014  Sum_probs=70.1

Q ss_pred             CcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhChhHHHHHHHHHHHHHHHHhhHHHhhhhh-HHHHHHHHHHHHHHh
Q 013991          317 GLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGF-GLAFLLNCASVVKNL  395 (432)
Q Consensus       317 ~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  395 (432)
                      .+|+|.++...+-....++..++  +..|.+.|+.+++.++.++.+...++...+.......-. ...+.+.+..++.+.
T Consensus        31 ~l~~sq~~l~~l~~~~~~G~~~G--~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~  108 (250)
T PF06813_consen   31 RLGYSQSQLNTLSTAGDIGSYFG--ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGN  108 (250)
T ss_pred             HhCCCHHHHHHHHHHHHHHhhcc--HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcc
Confidence            38999999999998888888775  588999999999999999999988887666544332211 122223333334333


Q ss_pred             hhhhHHHHHHHHHhccccccchhhhhhH
Q 013991          396 LSVSIITGLFILQNRAVVRVLTYTLSCH  423 (432)
Q Consensus       396 ~~~~~~~~~~~~~~~~~p~~~~g~~~~~  423 (432)
                      +.............+..|+ .||++.|+
T Consensus       109 s~~~~~ta~lvt~~~NFP~-~RG~vvgi  135 (250)
T PF06813_consen  109 SSCWFNTASLVTCVRNFPR-SRGTVVGI  135 (250)
T ss_pred             cHHHhhhHHHHHHHHhCcc-ccCceehh
Confidence            3333444444445567875 68987765

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=96.94  E-value=0.0017  Score=62.17  Aligned_cols=150  Identities=15%  Similarity=0.178  Sum_probs=100.0

Q ss_pred             hhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHhhh----------hhHHHHHHHHHHHhhhccc-h
Q 013991           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS----------VNFWMAVLTRFLLGSLNGL-L  152 (432)
Q Consensus        84 ~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~----------~~~~~l~~~r~~~G~~~g~-~  152 (432)
                      .|.+..+..++..++..+...+.-++.-|+++..+.++.++..+.-..-          ++.+-.+.--++..+..+. .
T Consensus       257 ~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~~~i~~  336 (433)
T PF03092_consen  257 YGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVIGMIAF  336 (433)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHHHHHHH
Confidence            7888888888888999999888888888999888887776665543211          1111122222344443333 4


Q ss_pred             hhHHhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCcCCCccccc-ccccCccchHHHHHHHHHHHHHHH
Q 013991          153 GPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSE-SLFGKFPYFLPCLCISLFAFGVTI  231 (432)
Q Consensus       153 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~-~~~~~~~~~~~~~~~~~~~~~~~~  231 (432)
                      .|...+++|+.|+...|...++.....++|..++..++..+.+.       ++.. ..|  .+.....++..+..++.+.
T Consensus       337 mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~-------~~vt~~~f--~~l~~lili~~~~~ll~l~  407 (433)
T PF03092_consen  337 MPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMEL-------FGVTRDDF--SNLWLLILICSVIQLLPLP  407 (433)
T ss_pred             HHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------cCCCcccc--cchHHHHHHHHHHHHHHHH
Confidence            55678899999999999999999999999999999999999883       3321 112  2222333444444455555


Q ss_pred             HHhhcccccCC
Q 013991          232 AAFWLPETLHR  242 (432)
Q Consensus       232 ~~~~~~e~~~~  242 (432)
                      ...++|++.+.
T Consensus       408 ll~lLp~~~~~  418 (433)
T PF03092_consen  408 LLFLLPPQKRI  418 (433)
T ss_pred             HHHHcCCCchh
Confidence            55677765443

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PRK03612 spermidine synthase; Provisional

Probab=96.85  E-value=0.056  Score=53.00  Aligned_cols=122  Identities=15%  Similarity=0.121  Sum_probs=71.7

Q ss_pred             HHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHH---HHH-HHHh---hhhhH-HH
Q 013991           66 FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVV---IFN-TLFG---LSVNF-WM  137 (432)
Q Consensus        66 ~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~---~~~-~~~~---~~~~~-~~  137 (432)
                      .+..-+|-+..+      .+.+.++++.|..+|+.+.|++.++.-|+.. .+-..+..   ++. ++..   ..... ..
T Consensus        40 ~l~~~~G~s~~~------~~~ii~~fl~glalGs~l~~~~~~~~~~~~~-~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~  112 (521)
T PRK03612         40 LASYLLGDSVTQ------FSTVIGLMLFAMGVGALLSKYLLRDAAAGFV-AVELLLALLGGLSALILYAAFAFQGLSRLL  112 (521)
T ss_pred             HHHHHhCchHHH------HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444556777777      8999999999999999999988744323222 11111111   111 1111   11111 11


Q ss_pred             HHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcc
Q 013991          138 AVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (432)
Q Consensus       138 l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (432)
                      ++..-++.++..|+..|. ..+..+ ...++-++..|.......+|+++|.++.+++.-
T Consensus       113 ~~~~~~~~~~l~G~~~Pl~~~~~~~-~~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLl  170 (521)
T PRK03612        113 LYVLVLLIGLLIGMEIPLLMRILQR-IRDQHLGHNVATVLAADYLGALVGGLAFPFLLL  170 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-ccccchhhhhhhhHhHHhHHHHHHHHHHHHHHH
Confidence            223334556666666665 333333 222234667888899999999999999888764

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=96.73  E-value=0.019  Score=54.42  Aligned_cols=130  Identities=8%  Similarity=-0.094  Sum_probs=91.2

Q ss_pred             hhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHhh------hh
Q 013991           60 LFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGL------SV  133 (432)
Q Consensus        60 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~------~~  133 (432)
                      ....+..+...-|.++..      +|..-+...+....+.+...++.+|+|..|.=+++...-..+..++..      .+
T Consensus       277 f~~lmt~yl~~~G~s~~~------igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~  350 (432)
T PF06963_consen  277 FGGLMTAYLKSQGYSPSV------IGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSP  350 (432)
T ss_pred             CcHHHHHHHHHCCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            455666666666999999      999999999999999999999999999988777766544433333322      11


Q ss_pred             ----hHHHHHHHHHHHhhhccchhh-HHhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcc
Q 013991          134 ----NFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (432)
Q Consensus       134 ----~~~~l~~~r~~~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (432)
                          +...++.+-++.=+|-=.+-. ..-++.|..|+++||...|.-....++-.++-..++-.+-+
T Consensus       351 ~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~~~  417 (432)
T PF06963_consen  351 FSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIFPR  417 (432)
T ss_pred             chhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence                222333333333333222333 47889999999999999999999998888877777654433

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=96.65  E-value=0.041  Score=48.58  Aligned_cols=174  Identities=14%  Similarity=0.068  Sum_probs=100.8

Q ss_pred             HHHHHHHHHHhhccccchhhhHHHHHHH-hc---------CCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCCh
Q 013991           43 LFSIWIIVLCTALPISSLFPFLYFMIKD-FQ---------IAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRK  112 (432)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---------~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr  112 (432)
                      ....|+..+++.+++-++.....++..+ .+         .+..+ -...-.|.+.-+-.+...+..+.+..+.||+.--
T Consensus        14 ~~~FwllGLcNN~~YVvmLSAA~DIl~~~~~~~~~~c~~h~~~r~-c~~~stg~VLLaDilPsL~iKl~~Pff~~rfpf~   92 (409)
T KOG3880|consen   14 AVAFWLLGLCNNYGYVVMLSAAEDILSEQVSDPGPTCIPHNSGRE-CQSVSTGAVLLADILPSLAIKLTAPFFIHRFPFG   92 (409)
T ss_pred             chHHHHHHHhcccceEeehhhhhhhhccccCCCCCCccccccccc-ccccccchhhhhhhhHHHHHHHhchhhhhhcccc
Confidence            3455666777777776655555555433 22         01000 0011145555555666677777788888886654


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhccchhhHHhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhh
Q 013991          113 PVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGF  192 (432)
Q Consensus       113 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  192 (432)
                      .=..+..++.+.+.++.+++++.++-+++-.+..++.|.-....--++..+++.    .++.++.+.+.++.+|..--..
T Consensus        93 ~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss~Y~~~----~i~~WSSGTGgAGliGa~SYa~  168 (409)
T KOG3880|consen   93 FRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSSRYPSI----VIAGWSSGTGGAGLIGASSYAF  168 (409)
T ss_pred             hHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhccCCCc----eeccccCCCCcchhhhhhHHHH
Confidence            334455667777888888999998888887788777776555433333334332    3444555666666666655555


Q ss_pred             hcccCCcCCCcccccccccCccchHHHHHHHHHHHHHHHHHhh
Q 013991          193 LAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFW  235 (432)
Q Consensus       193 l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (432)
                      +.+.             + ..+.+...++...+.++.....++
T Consensus       169 lT~~-------------~-~~spk~Tlli~l~lP~lfa~~yf~  197 (409)
T KOG3880|consen  169 LTSW-------------A-NLSPKSTLLIMLFLPALFAFAYFF  197 (409)
T ss_pred             Hhhh-------------c-CCChhhHHHHHHHHHHHHHHHHHh
Confidence            5541             1 445555666666555554444444

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=96.58  E-value=0.067  Score=46.30  Aligned_cols=106  Identities=12%  Similarity=0.011  Sum_probs=53.6

Q ss_pred             chhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCcCCCcccccccccCccchHHHHHHHHHHHHHHHHHhhcccccCCCCC
Q 013991          166 EHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHND  245 (432)
Q Consensus       166 ~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  245 (432)
                      ++|+........++++|.++.-..--.-.+.          +. ..+..|+..+.+.+++.++-++....+.+.-+...+
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~----------~~-~~~~~W~~I~si~~lL~~IpLIly~ifGk~fd~~~~   70 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSV----------VI-ALTNNWQWILSIFILLIFIPLILYIIFGKNFDIYSP   70 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhhHHhcchH----------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCc
Confidence            5667777777778888887765442111110          00 114457776666666665544444444221111111


Q ss_pred             CCcchhhhHHHhhhhhhhhhhhhccCCCCccccccchhHHHHHHHHHHHH
Q 013991          246 DDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFS  295 (432)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (432)
                      +++++             .++.+.+.+....+.+|++..|.-.+.+....
T Consensus        71 ~~k~~-------------k~~~~~~~~~s~~~~LK~K~tw~w~~~Yg~wL  107 (267)
T PF07672_consen   71 KEKQE-------------KENSTLSKKPSYKSILKEKETWKWILIYGIWL  107 (267)
T ss_pred             ccccc-------------cccccccccchHHHHHccchHHHHHHHHHHHh
Confidence            10000             00011223356778899998887777666544

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.57  E-value=0.038  Score=52.48  Aligned_cols=146  Identities=14%  Similarity=0.247  Sum_probs=93.5

Q ss_pred             hhHHHHHHHHHHhhccccchhhhHHHHHH---HhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhh---ccCChHH
Q 013991           41 TELFSIWIIVLCTALPISSLFPFLYFMIK---DFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD---RYGRKPV  114 (432)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~d---r~Grr~~  114 (432)
                      ++.+.+....+..+..........|....   ..+.+...     +.++..-...++..+++.+.+.+++   |+||++.
T Consensus       240 ~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~-----~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~  314 (461)
T KOG3098|consen  240 PKMLLLFPFFFYTGLETSFWISIYPTCISFTRKLGSNTTY-----LIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPT  314 (461)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccCcchh-----HHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcc
Confidence            33444555555555555555555443321   22222211     2333344444555556666666664   5889999


Q ss_pred             HHHHHHHHHHHHHHHhhh------------------hhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhH
Q 013991          115 IIMGTASVVIFNTLFGLS------------------VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTV  175 (432)
Q Consensus       115 l~~~~~~~~~~~~~~~~~------------------~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~  175 (432)
                      +.++..+..+.+++.-..                  +++....+.-++.|++.+..... +.++.+.. +++|..+.++.
T Consensus       315 ~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~  393 (461)
T KOG3098|consen  315 VLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLF  393 (461)
T ss_pred             hhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHH
Confidence            999999888888877542                  24556667778999999888876 88888888 67888888888


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 013991          176 STAWGIGLIIGPALGGF  192 (432)
Q Consensus       176 ~~~~~~g~~~g~~~~~~  192 (432)
                      ..-..++..++-.....
T Consensus       394 kfyq~~~s~v~~f~~~~  410 (461)
T KOG3098|consen  394 KFYQSVASCVAFFFSPY  410 (461)
T ss_pred             HHHHHHHHHHHhhhhhh
Confidence            87777777665544433

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=96.52  E-value=0.093  Score=47.81  Aligned_cols=83  Identities=10%  Similarity=0.009  Sum_probs=63.2

Q ss_pred             cccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhChhHHHHHHHHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhh
Q 013991          318 LNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLS  397 (432)
Q Consensus       318 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (432)
                      +|++..+++.++........+.+ .+.+.+.||+|||+..+...++..++++.--. ..      ...++++=++.|...
T Consensus        64 yg~~~~qIa~Lf~~Gf~Ss~i~g-~~~G~laD~~Grk~~cl~~cily~~scl~k~~-~~------~~~L~~GRvlgGiaT  135 (354)
T PF05631_consen   64 YGFSEHQIAILFVAGFASSAIFG-TFVGSLADRYGRKKACLLFCILYSLSCLTKHS-SN------YPVLLLGRVLGGIAT  135 (354)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCchHHHHHHHHHHHHHHHHHhc-cc------cHHHHHHHHHHHHHH
Confidence            69999999999999888888877 58899999999999999988888888765322 11      124555656777777


Q ss_pred             hhHHHHHHHHH
Q 013991          398 VSIITGLFILQ  408 (432)
Q Consensus       398 ~~~~~~~~~~~  408 (432)
                      ...+....+.+
T Consensus       136 SLLfS~FEsW~  146 (354)
T PF05631_consen  136 SLLFSAFESWM  146 (354)
T ss_pred             HHHHHHHHHHH
Confidence            77777666654

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=95.92  E-value=0.091  Score=37.02  Aligned_cols=73  Identities=19%  Similarity=0.131  Sum_probs=58.6

Q ss_pred             HhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhChhHHHHHHHHHHHHHHHHhhHHHh
Q 013991          297 HDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAM  376 (432)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (432)
                      .-+.+...+|...++      .++|..+.|++-+...++..+|. +...++.++.++++.+..+.+...+..+.+++...
T Consensus         7 gRFayTplLP~M~~~------~~ls~~~ag~lasaNy~GYL~GA-l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~   79 (85)
T PF06779_consen    7 GRFAYTPLLPLMQAD------GGLSLSQAGWLASANYLGYLVGA-LLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHS   79 (85)
T ss_pred             HHHHHHhHhHHHHHh------cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            344566677866665      59999999999999999999998 47788888878888888988888888777766543

Note that many members are hypothetical proteins.

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=95.80  E-value=0.015  Score=55.36  Aligned_cols=157  Identities=10%  Similarity=0.146  Sum_probs=89.2

Q ss_pred             CCCchhHHHHHHHHHHhhccccchhhhH-HHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhh-hccCChHH
Q 013991           37 GLPITELFSIWIIVLCTALPISSLFPFL-YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVA-DRYGRKPV  114 (432)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~-dr~Grr~~  114 (432)
                      +..+...+.+....+...+.....-... +.....++.+.++  ...+.|...++..+-.....+..+... -++.+|+.
T Consensus       258 ~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~--av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~~  335 (488)
T KOG2325|consen  258 KLDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSE--AVLYNGITLSISGILSVILLLLYIFTRLGKIDKRRI  335 (488)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccch--HHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhcccee
Confidence            3444555555555554444443322222 3445556776665  222234444444433333333444333 34455666


Q ss_pred             HHHHHHHHHHHHHHHhhh-------------------------------hhHHHHHHHH-HHHhhhccchhhH-Hhhhhh
Q 013991          115 IIMGTASVVIFNTLFGLS-------------------------------VNFWMAVLTR-FLLGSLNGLLGPI-KAYACE  161 (432)
Q Consensus       115 l~~~~~~~~~~~~~~~~~-------------------------------~~~~~l~~~r-~~~G~~~g~~~~~-~~~i~~  161 (432)
                      +..+.++......+....                               .+.+.+++.+ ++.|.+.-..... .++-++
T Consensus       336 ~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySk  415 (488)
T KOG2325|consen  336 ILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYSK  415 (488)
T ss_pred             eeehHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccchHHHHHHH
Confidence            666644444444333210                               1223334443 3456655544444 888899


Q ss_pred             hcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcc
Q 013991          162 IFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (432)
Q Consensus       162 ~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (432)
                      +..|++++...+.++...+.+..+||++......
T Consensus       416 iLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~  449 (488)
T KOG2325|consen  416 ILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFT  449 (488)
T ss_pred             HhCCccccceeEEEEeccchhhhhhHHHHhhhHH
Confidence            9999999999999999999999999999888877

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=95.69  E-value=0.12  Score=49.46  Aligned_cols=109  Identities=13%  Similarity=0.037  Sum_probs=73.5

Q ss_pred             hhHHHHHHhHHHHHHHHhhhhhhhccCCh-HHHHHHHH---HHHHHHHHHhhh---------hhHHHHHHHHHHHhhhcc
Q 013991           84 AGYVGSSFMFGRALTSVFWGLVADRYGRK-PVIIMGTA---SVVIFNTLFGLS---------VNFWMAVLTRFLLGSLNG  150 (432)
Q Consensus        84 ~~~~~s~~~~~~~~~~~~~G~l~dr~Grr-~~l~~~~~---~~~~~~~~~~~~---------~~~~~l~~~r~~~G~~~g  150 (432)
                      .-.....+.++-.+|..+..+.. .-++| +.+.+..+   ++.-..++|..-         ++-+..++.-++.|+..|
T Consensus       309 ~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnG  387 (437)
T TIGR00939       309 PIICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNG  387 (437)
T ss_pred             HHHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhh
Confidence            45667777888888877554321 11222 13333333   333333344322         355667777889999999


Q ss_pred             chhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhh
Q 013991          151 LLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL  193 (432)
Q Consensus       151 ~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  193 (432)
                      -.... ..+..+..++++|..+-.+...+..+|..+|..++-.+
T Consensus       388 y~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~  431 (437)
T TIGR00939       388 YLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLF  431 (437)
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88775 88888889999999999999999999999998876544

>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]

Probab=95.39  E-value=0.16  Score=46.24  Aligned_cols=77  Identities=9%  Similarity=-0.107  Sum_probs=53.3

Q ss_pred             hhHHHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHH
Q 013991           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (432)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~  120 (432)
                      +..+.+.++.++...+.-+.......+..+++.+.-.     +.+.....-.....+..++.|...|+..|+|++...+.
T Consensus        27 ~~~i~Ly~gy~lt~wgdR~W~F~VsL~M~~L~gnsl~-----lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~  101 (503)
T KOG2601|consen   27 STVIFLYLGYFLTTWGDRMWEFSVSLFMILLGGNSLL-----LVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWLL  101 (503)
T ss_pred             ceeehhhHHHHHhHhhHhHHHHHHHHHHHHHcCceeh-----hHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHHh
Confidence            4455667778888887777777777777777764432     13333334455567788899999999999999876655


Q ss_pred             HH
Q 013991          121 SV  122 (432)
Q Consensus       121 ~~  122 (432)
                      +-
T Consensus       102 lq  103 (503)
T KOG2601|consen  102 LQ  103 (503)
T ss_pred             hc
Confidence            43

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=95.34  E-value=0.0045  Score=60.82  Aligned_cols=148  Identities=14%  Similarity=0.243  Sum_probs=0.0

Q ss_pred             hHHHHHHHHHHhhccccchhhhHH-HHHHHhcCCccccchhhhhhHHHHHHhH-HHHHHHHhhhhhhhccC--ChHHHHH
Q 013991           42 ELFSIWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMF-GRALTSVFWGLVADRYG--RKPVIIM  117 (432)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~s~~~~-~~~~~~~~~G~l~dr~G--rr~~l~~  117 (432)
                      .+....++.....+....+..+.| ++..+|+.+.++      ++++..+..+ +.++|.+++|.+..|+.  .|..+..
T Consensus       306 ~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~------A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~  379 (539)
T PF03137_consen  306 VFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQ------ASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKF  379 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHH
Confidence            344556666667777777788887 667789999988      7777766655 56788889999999876  3555544


Q ss_pred             HHHHHHHHHHHHh---h--h-------------------------------------------------hhHHHHHHHHH
Q 013991          118 GTASVVIFNTLFG---L--S-------------------------------------------------VNFWMAVLTRF  143 (432)
Q Consensus       118 ~~~~~~~~~~~~~---~--~-------------------------------------------------~~~~~l~~~r~  143 (432)
                      ..+...++.++..   +  +                                                 +.+..+++..+
T Consensus       380 ~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~  459 (539)
T PF03137_consen  380 CIVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLF  459 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHH
Confidence            4444444333310   0  0                                                 01112222222


Q ss_pred             HHhhhccc-hhhHHhhhhhhcccchhhhhhhhHHHHHH-HHHHHHHHHHhhhcc
Q 013991          144 LLGSLNGL-LGPIKAYACEIFREEHQALGLSTVSTAWG-IGLIIGPALGGFLAQ  195 (432)
Q Consensus       144 ~~G~~~g~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~-~g~~~g~~~~~~l~~  195 (432)
                      +.-+..+. ..|....+-+.+|+++|+.++|+...... +|.+-||++-|.+.|
T Consensus       460 ~~~~~~~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD  513 (539)
T PF03137_consen  460 ILSFFTFMSQVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIID  513 (539)
T ss_dssp             ------------------------------------------------------
T ss_pred             HHHHHHHhcccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHh
Confidence            22222223 33445566688999999999999865554 588899999999988

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=95.09  E-value=0.59  Score=43.90  Aligned_cols=98  Identities=17%  Similarity=0.164  Sum_probs=70.9

Q ss_pred             chhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHH--HHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhccchhh-H
Q 013991           79 DIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII--MGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-I  155 (432)
Q Consensus        79 ~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~--~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~-~  155 (432)
                      +...+.|.+-++..+...++++..|++..++.+-.-+.  ...++.+...++++..+|.|..+++.++.+...-...+ +
T Consensus       282 ~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA  361 (412)
T PF01770_consen  282 NESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIA  361 (412)
T ss_pred             CCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566899999999999999999999988888754444  33455566667778889999999998887765444444 4


Q ss_pred             HhhhhhhcccchhhhhhhhHH
Q 013991          156 KAYACEIFREEHQALGLSTVS  176 (432)
Q Consensus       156 ~~~i~~~~~~~~r~~~~~~~~  176 (432)
                      ..-++....++.-+..+|+..
T Consensus       362 ~~qIA~~l~~e~yaLVFGiNt  382 (412)
T PF01770_consen  362 SFQIAKNLSEERYALVFGINT  382 (412)
T ss_pred             HHHHHHhccccceeeeeeeHH
Confidence            555666666666676666643

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=94.63  E-value=0.01  Score=50.82  Aligned_cols=64  Identities=8%  Similarity=0.030  Sum_probs=42.7

Q ss_pred             CCCccccccchhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHH
Q 013991          272 ATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQ  340 (432)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~  340 (432)
                      +.+|...+++-.+....+.+.+.-.....-..+++.|..++     ++++.....++-.+..+.....+
T Consensus       191 Rm~W~~WF~~v~~YQiAllYmLsRL~iNiSQaYlaFfvidd-----lqm~qsakAllP~v~Yl~SF~VS  254 (412)
T KOG4830|consen  191 RMHWTSWFGHVQFYQIALLYMLSRLYINISQAYLAFFVIDD-----LQMEQSAKALLPMVAYLSSFSVS  254 (412)
T ss_pred             cccchhhhhhhHHHHHHHHHHHHHHHhhhhhhheeeEEeeh-----hhHHHHHhhhhHHHHHHhhhhHH
Confidence            35677777777777777777777666666666777666665     56666666666666666555544

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=94.50  E-value=0.21  Score=50.44  Aligned_cols=112  Identities=10%  Similarity=-0.022  Sum_probs=74.8

Q ss_pred             hHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHH-hChhHHHHHHHHHHHHHHHHhhHHHhhh
Q 013991          300 AYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI-LGPIMVARIAGVLTIPLLTSYPYIAMLS  378 (432)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (432)
                      +....+..|+...     +|++...+..+........-+.. .+++++.|+ +|+++.+.++.++..++..++.......
T Consensus         5 Gm~aiLvlYl~~~-----lg~~~~~A~~i~~~f~~l~yl~p-ilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~   78 (654)
T TIGR00926         5 GMRTILVLYFLNF-----LGFSESTSTVLFHTFTYLCYLTP-LIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPS   78 (654)
T ss_pred             ecHHHHHHHHHHH-----cCCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcc
Confidence            3444555565554     68888777777666665555555 477777775 6999999999888888877766532211


Q ss_pred             h--hHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccch
Q 013991          379 G--FGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLT  417 (432)
Q Consensus       379 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  417 (432)
                      .  .......+++..+...+.++.-|+..+...+..+++++
T Consensus        79 ~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~  119 (654)
T TIGR00926        79 SGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQL  119 (654)
T ss_pred             cccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccch
Confidence            0  11223345666677778888889999999998876543

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=93.96  E-value=0.018  Score=52.49  Aligned_cols=107  Identities=20%  Similarity=0.130  Sum_probs=2.2

Q ss_pred             HHHHHHhHHHHHHHHhhhhhhhcc-CChHHHHH--HHHHHHHHHHHHh----------hhhhHHHHHHHHHHHhhhccch
Q 013991           86 YVGSSFMFGRALTSVFWGLVADRY-GRKPVIIM--GTASVVIFNTLFG----------LSVNFWMAVLTRFLLGSLNGLL  152 (432)
Q Consensus        86 ~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~--~~~~~~~~~~~~~----------~~~~~~~l~~~r~~~G~~~g~~  152 (432)
                      .....+.++-.+|....++.-=+- .+|++...  .-+++.-..++|.          ..+|-+..++.-++.|+..|-.
T Consensus       186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl  265 (309)
T PF01733_consen  186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL  265 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence            356678888888888777632110 24444332  2222222223331          1234456677778899999988


Q ss_pred             hhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhh
Q 013991          153 GPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGF  192 (432)
Q Consensus       153 ~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  192 (432)
                      ... ..+..+..++++|..+-.+...+..+|..+|..++-.
T Consensus       266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~~  306 (309)
T PF01733_consen  266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSFL  306 (309)
T ss_dssp             -HHHH------------------------------------
T ss_pred             hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            775 8888999999999999888888888888888777643

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=92.59  E-value=2.5  Score=37.61  Aligned_cols=99  Identities=12%  Similarity=-0.113  Sum_probs=63.6

Q ss_pred             chhhHHHHHHHHHHHHHHHHhHHHHHHHhChhHHHHHHHHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHH
Q 013991          323 QMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIIT  402 (432)
Q Consensus       323 ~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (432)
                      ...+.......+...++. +..+.+.||.|+|+....+......+.+...+...    .....+.+.....+...+...+
T Consensus        39 ~~~~~~~~~~~~~~~~~~-~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~  113 (338)
T COG0477          39 LLYGLLLSAFFLGYAIGS-LLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPN----VGLALLLILRLLQGLGGGGLLP  113 (338)
T ss_pred             HHHHHHHHHHHHHHHHHh-hhhhhccccccchHHHHHHHHHHHHHHHHHHhCcc----chHHHHHHHHHHHHhhhHHHHH
Confidence            467778888888888877 68899999998887766666543333233332222    1111233333335666677888


Q ss_pred             HHHHHHhccccc-cchhhhhhHHHH
Q 013991          403 GLFILQNRAVVR-VLTYTLSCHFWF  426 (432)
Q Consensus       403 ~~~~~~~~~~p~-~~~g~~~~~~~~  426 (432)
                      ....+..+..|+ +.|+...+....
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~  138 (338)
T COG0477         114 VASALLSEWFPEATERGLAVGLVTL  138 (338)
T ss_pred             HHHHHHHHhcCchhHHHHHHHHHHH
Confidence            999999999998 566766665544

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=91.59  E-value=0.48  Score=44.64  Aligned_cols=133  Identities=12%  Similarity=-0.038  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHH----hChhHHHH-HHH
Q 013991          287 SIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI----LGPIMVAR-IAG  361 (432)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~-~~~  361 (432)
                      .....+...+....-.++.+.|.++      +|.+....+.+....-+.+.+.+ ++.|..+||    +||||..+ .+.
T Consensus        37 v~~ia~Gvqf~wA~elsy~tPyl~~------lGvphk~~S~iw~~gPi~G~~vQ-P~vG~~SDrc~sr~GRRRPfI~~~s  109 (498)
T KOG0637|consen   37 VASIAAGVQFGWALELSYLTPYLQS------LGVPHKWSSIIWLCGPLSGLLVQ-PLVGSASDRCTSRYGRRRPFILAGS  109 (498)
T ss_pred             HHHHHHHHHHHHHHHhccccHHHHH------cCCCcccccccccccccccceec-ccccccccccccccccccchHHHhh
Confidence            3334444444444555566666665      58888888888888888888887 688888886    57766544 445


Q ss_pred             HHHHHHHHHhhHHHhhhhh-----------HHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhh-hhhHHHH
Q 013991          362 VLTIPLLTSYPYIAMLSGF-----------GLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYT-LSCHFWF  426 (432)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~-~~~~~~~  426 (432)
                      ....++++++++.......           .......+...+.=+..........++..+...++++-+ +++.+-+
T Consensus       110 ~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~  186 (498)
T KOG0637|consen  110 LLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSF  186 (498)
T ss_pred             HHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHH
Confidence            5556667777766543311           122333444445555565666777888888876666555 6665544

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=90.34  E-value=4.8  Score=37.71  Aligned_cols=109  Identities=19%  Similarity=0.114  Sum_probs=75.8

Q ss_pred             hhhhHHHHH-HhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHhh---------hhhHHHHHHHHHHHhhhccc
Q 013991           82 SYAGYVGSS-FMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGL---------SVNFWMAVLTRFLLGSLNGL  151 (432)
Q Consensus        82 ~~~~~~~s~-~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~---------~~~~~~l~~~r~~~G~~~g~  151 (432)
                      ++.-+.... +.+.-.+|.+...++-++= ||. +.+..++-.+..-++.+         -.+-++++..-.+.|+..|-
T Consensus       282 ~y~~~~~~l~fN~~d~vG~~~a~~~~~~~-~r~-l~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGY  359 (406)
T KOG1479|consen  282 WYALLLVFLSFNVFDLIGSILAALLTWPD-PRK-LTIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGY  359 (406)
T ss_pred             hhHHHHHHHHhHHHHHhhhhhhhcccCCC-Cce-ehHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccch
Confidence            335566666 8888888877777766553 333 33333333333333332         34557777888899999998


Q ss_pred             hhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhh
Q 013991          152 LGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGF  192 (432)
Q Consensus       152 ~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  192 (432)
                      ...+ +.+..+..+++++-.+-.+.......|...|..++..
T Consensus       360 ltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s~l  401 (406)
T KOG1479|consen  360 LTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLSWV  401 (406)
T ss_pred             HhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            8776 8899999999998888888888888888888777644

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=89.04  E-value=0.15  Score=46.51  Aligned_cols=38  Identities=5%  Similarity=-0.109  Sum_probs=3.3

Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhH
Q 013991          386 LNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCH  423 (432)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~  423 (432)
                      .++...+.++..+-..........+.+++++|-.+..+
T Consensus       251 ~~i~~~l~g~TNGyl~tl~m~~~p~~v~~~e~e~aG~~  288 (309)
T PF01733_consen  251 FIILMLLFGFTNGYLSTLAMMYAPKSVSPEERELAGSV  288 (309)
T ss_dssp             ----------------HHHH------------------
T ss_pred             HHHHHHHHHHccchhhhceeeeCCCcCCHHHHHHHHHH
Confidence            34445566667777777888888888887777555443

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=88.75  E-value=21  Score=34.66  Aligned_cols=102  Identities=9%  Similarity=0.063  Sum_probs=63.6

Q ss_pred             ccchhhHHHHHHHHHHHHHHHHhHHHHHHHhChhHHHHHHHHHHHHHHHHhhHHHhhhh---------------------
Q 013991          321 STQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSG---------------------  379 (432)
Q Consensus       321 s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------  379 (432)
                      +++....+.....+.+.+.-.++..++++|++++++..+........+.++++......                     
T Consensus        41 gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~  120 (472)
T TIGR00769        41 GAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFM  120 (472)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhH
Confidence            44667777776666666553367899999999999887766666665555554422110                     


Q ss_pred             -------hHHHHHHHHHHHHHHhhhhhHHH-HHHHHHhccccccchhhhhhHHH
Q 013991          380 -------FGLAFLLNCASVVKNLLSVSIIT-GLFILQNRAVVRVLTYTLSCHFW  425 (432)
Q Consensus       380 -------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~g~~~~~~~  425 (432)
                             .+....+++..   -..+....+ ..+.+++|....++..+.++.+.
T Consensus       121 ~~i~~~~~W~~~~FYv~~---elw~~~vvS~lFW~fandi~t~~qakRfy~l~~  171 (472)
T TIGR00769       121 GFIAILRIWSFALFYVMA---ELWGSVVLSLLFWGFANQITTIDEAKRFYALFG  171 (472)
T ss_pred             HHHHHHhhhhHHHHHHHH---HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence                   11112222222   224444454 78899999998888777776654

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=88.08  E-value=6.7  Score=34.30  Aligned_cols=103  Identities=19%  Similarity=0.190  Sum_probs=55.8

Q ss_pred             hhHHHHHHhHHHHHHHHhhhhhhhc-cCChHHHH----HHHHHHHHHHHHHhh-----hhhHHHHHHHHHHHhhhccchh
Q 013991           84 AGYVGSSFMFGRALTSVFWGLVADR-YGRKPVII----MGTASVVIFNTLFGL-----SVNFWMAVLTRFLLGSLNGLLG  153 (432)
Q Consensus        84 ~~~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~l~----~~~~~~~~~~~~~~~-----~~~~~~l~~~r~~~G~~~g~~~  153 (432)
                      ......++..+..+|....|.+... +.||+.+.    .+.+...++.+....     ..+...+++.-++.|++.=...
T Consensus       143 ~~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ  222 (267)
T PF07672_consen  143 IPIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQ  222 (267)
T ss_pred             hHHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhh
Confidence            4556666777777888888888764 55665543    233444444333211     1135567777778877532334


Q ss_pred             hHHhhhhhhcccchhhhhhhhHHHHHHHHHHHH
Q 013991          154 PIKAYACEIFREEHQALGLSTVSTAWGIGLIIG  186 (432)
Q Consensus       154 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g  186 (432)
                      ++.-.+..-++..++.+.--.++..+++|-++-
T Consensus       223 ~ViL~lPhEyK~~~pk~ig~~Fg~iWGfGY~~y  255 (267)
T PF07672_consen  223 GVILNLPHEYKGYNPKKIGIQFGLIWGFGYIFY  255 (267)
T ss_pred             HHHhcChhhhcCCCcceehhHHHHHHHHHHHHH
Confidence            444444444444444444334455666665543

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=82.65  E-value=6.9  Score=35.19  Aligned_cols=75  Identities=15%  Similarity=0.188  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHhhhccchhh-HHhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhh
Q 013991          119 TASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL  193 (432)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  193 (432)
                      .+++.+...+..+.+++|..++.-+..|+-+|...+ ..--+.+-.++++|-.+++....+-++|..++..++-.+
T Consensus       326 Nl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl  401 (409)
T KOG3880|consen  326 NLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL  401 (409)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence            344555566667788999888888899996555554 455566667889999999999998888888877766443

>PRK03612 spermidine synthase; Provisional

Probab=82.29  E-value=55  Score=32.42  Aligned_cols=56  Identities=20%  Similarity=0.168  Sum_probs=33.3

Q ss_pred             HHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHH
Q 013991          289 IVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI  350 (432)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~  350 (432)
                      ...++..++...+...+.-.+...     +|-+....+.+.+.+-.+..+|+ .+++++.++
T Consensus        21 ~~~f~sg~~~L~yEv~~~r~l~~~-----~G~s~~~~~~ii~~fl~glalGs-~l~~~~~~~   76 (521)
T PRK03612         21 AAVFVCAACGLVYELLLGTLASYL-----LGDSVTQFSTVIGLMLFAMGVGA-LLSKYLLRD   76 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-----hCchHHHHHHHHHHHHHHHHHHH-HHHHhhhhh
Confidence            333444555555555544444333     56677777888888777777777 356665533

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	432
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	1e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	6e-06
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	2e-05
2cfq_A	417	Lactose permease; transport, transport mechanism,	8e-05

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375

 Score = 58.8 bits (143), Expect = 1e-09
 Identities = 27/158 (17%), Positives = 67/158 (42%), Gaps = 18/158 (11%)

Query: 89  SSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSL 148
            +++    ++ +F+G ++DR GR+PVI++G +  ++   +   + +  + +    + G +
Sbjct: 42  GAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQG-M 100

Query: 149 NGLLGPIKAYAC--EIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSS 206
              +G + A     +++         S ++    +  ++ P +GG L         +++ 
Sbjct: 101 GTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT-------MWNW 153

Query: 207 ESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHN 244
            + +     FL  LC  +        A W+PET     
Sbjct: 154 RACY----LFLLVLCAGVTF----SMARWMPETRPVDA 183

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 2e-07
 Identities = 74/444 (16%), Positives = 125/444 (28%), Gaps = 146/444 (32%)

Query: 87  VGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFG---------------- 130
           V     F      +FW  +  +    P  ++      +   L                  
Sbjct: 176 VQCKMDFK-----IFW--LNLKNCNSPETVL-----EMLQKLLYQIDPNWTSRSDHSSNI 223

Query: 131 -LSVNFWMAVLTRFLLGSL--NGLL--------GPIKAYA--CEIF---REEHQALGLST 174
            L ++   A L R L      N LL            A+   C+I    R +     LS 
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283

Query: 175 VSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKF----PYFLP---C----LCIS 223
            +T     + +          P E        +SL  K+    P  LP          +S
Sbjct: 284 ATT---THISLDHHSMTL--TPDE-------VKSLLLKYLDCRPQDLPREVLTTNPRRLS 331

Query: 224 LFA--------------------FGVTIAAFW--LPETLHRHNDDD-----DSCDVSYDA 256
           + A                        I +    L    +R   D       S  +    
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL 391

Query: 257 LESASAEVKEEEGREATP---KKSLLKNWPLMSSIIVYCVF-----------SLHDM--- 299
           L     +V + +         K SL++  P  S+I +  ++           +LH     
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451

Query: 300 AYSEI--FSLWANSPKKLGGLNYSTQMVGEVLA-------ITGFSLLVFQLSLYPFLE-- 348
            Y+    F      P  L    Y    +G  L        +T F ++        FLE  
Sbjct: 452 HYNIPKTFDSDDLIPPYLD--QYFYSHIGHHLKNIEHPERMTLFRMVFLDFR---FLEQK 506

Query: 349 -RILGPIMVARIAGVLTIPLLTSY-PYI--------AMLSGFGLAFLLNCASVV-----K 393
            R       A  + + T+  L  Y PYI         +++   L FL      +      
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI-LDFLPKIEENLICSKYT 565

Query: 394 NLLSVSIIT---GLFILQNRAVVR 414
           +LL ++++     +F   ++ V R
Sbjct: 566 DLLRIALMAEDEAIFEEAHKQVQR 589

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 47.3 bits (113), Expect = 6e-06
 Identities = 27/217 (12%), Positives = 55/217 (25%), Gaps = 30/217 (13%)

Query: 85  GYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFL 144
           G+  S        +    G V+DR   +  +  G           G       ++   F+
Sbjct: 65  GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFV 124

Query: 145 LGSLNGLL-GPIKAYACEI----FREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK 199
           L  L G   G             + ++ +   +S  + A  +G  I P L          
Sbjct: 125 LLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA---- 180

Query: 200 YPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL-----PETLHRHNDDDDSCDVSY 254
                   +                    + +A F                 +   +   
Sbjct: 181 --WFNDWHAAL-----------YMPAFCAILVALFAFAMMRDTPQSCGLPPIE---EYKN 224

Query: 255 DALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVY 291
           D  +  + + ++E   +    + +L N  L    I  
Sbjct: 225 DYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIAN 261

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Length = 438

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 45/324 (13%), Positives = 91/324 (28%), Gaps = 48/324 (14%)

Query: 84  AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSV---NFWMAVL 140
           AG + S+F FG  +  +  G++  +   K  II G     +   LF  +    N+ + ++
Sbjct: 63  AGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLV 122

Query: 141 TRFLLGSLNGLLG-PIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL------ 193
             F++ +  G L      +   +  E      L+   T    G II    G  L      
Sbjct: 123 GLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVP 182

Query: 194 --------AQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHND 245
                       E+      S  L  + PY +    + L A  + +     P     ++ 
Sbjct: 183 HQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTK--FPALQSDNHS 240

Query: 246 DDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIF 305
           D                    ++G  +     L +      +++    +     A     
Sbjct: 241 D-------------------AKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYL 281

Query: 306 SLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI-----LGPIMVARIA 360
             +A           +       L  T     + + +    + R      L    +  +A
Sbjct: 282 IRYAVEE----IPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMA 337

Query: 361 GVLTIPLLTSYPYIAMLSGFGLAF 384
             L       +  +  L+      
Sbjct: 338 LCLISAFAGGHVGLIALTLCSAFM 361

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417

 Score = 43.8 bits (103), Expect = 8e-05
 Identities = 41/322 (12%), Positives = 94/322 (29%), Gaps = 48/322 (14%)

Query: 81  GSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI---------FNTLFGL 131
            S  G + ++      L    +GL++D+ G +  ++     +++         F  L   
Sbjct: 42  KSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQY 101

Query: 132 SVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWG-IGLIIGPALG 190
           ++     V   +L    N     ++A+  ++ R  +   G + +   +G +G  +G ++ 
Sbjct: 102 NILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARM---FGCVGWALGASIV 158

Query: 191 GFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSC 250
           G                 +F     F+  L          +  F   +            
Sbjct: 159 GI----------------MFTINNQFVFWLGSGCALILAVLLFFAKTDAPS--------- 193

Query: 251 DVSYDALESASAEVKEEEGREATPKKSLLKNWPLMS-SIIVYCVFSLHDMAYSEIFSLWA 309
                +   A+A               L +   L   S+ V  V   +D+   +  + + 
Sbjct: 194 -----SATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFT 248

Query: 310 NSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLT 369
           +           T++ G V  +               + RI G      +AG +    + 
Sbjct: 249 SFFATGE---QGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRII 304

Query: 370 SYPYIAMLSGFGLAFLLNCASV 391
              +        +   L+   V
Sbjct: 305 GSSFATSALEVVILKTLHMFEV 326

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	432
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	100.0
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	100.0
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	100.0
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.98
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.97
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.93
2xut_A	524	Proton/peptide symporter family protein; transport	99.92
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.58
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.48
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.47
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.38
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.37
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.01
2xut_A	524	Proton/peptide symporter family protein; transport	98.81

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=100.00  E-value=5.8e-35  Score=280.58  Aligned_cols=353  Identities=11%  Similarity=0.019  Sum_probs=272.7

Q ss_pred             chhHHHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHH
Q 013991           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (432)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~  119 (432)
                      ++.+...++..++..+......+.+|.+.+++ .+..+      .|++.+++.++..++++++|+++||+|||++++++.
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~------~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~   99 (451)
T 1pw4_A           27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGD------LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGL   99 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSC------HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhH------HHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHH
Confidence            44566777788888888899999999999999 99999      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhh----hhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhc
Q 013991          120 ASVVIFNTLFGL----SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (432)
Q Consensus       120 ~~~~~~~~~~~~----~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  194 (432)
                      ++.+++.+++++    +++++.++++|+++|++.+...+. .+++.|++|+++|++++++.+.+.++|.+++|.+++++.
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  179 (451)
T 1pw4_A          100 ILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM  179 (451)
T ss_dssp             HHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999    999999999999999998887776 999999999999999999999999999999999999988


Q ss_pred             ccCCcCCCccc-ccccccCccchHHHHHHHHHHHH-HHHHHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhccCC
Q 013991          195 QPAEKYPNLFS-SESLFGKFPYFLPCLCISLFAFG-VTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREA  272 (432)
Q Consensus       195 ~~~~~~~~~~g-w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (432)
                      +       .+| ||+.|         .+.+++.++ .++..+.+||++++.+.+++++....++ ++ .++. ++++...
T Consensus       180 ~-------~~g~w~~~f---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~-~~~~~~~  240 (451)
T 1pw4_A          180 A-------WFNDWHAAL---------YMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYP-DD-YNEK-AEQELTA  240 (451)
T ss_dssp             H-------HTCCSTTCT---------HHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC----------------CC
T ss_pred             H-------HhccHHHHH---------HHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhccccc-cc-chhh-hhccccc
Confidence            7       455 65554         666655554 3444567788766543221111100000 00 0000 0011111


Q ss_pred             C--CccccccchhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHH
Q 013991          273 T--PKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI  350 (432)
Q Consensus       273 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~  350 (432)
                      .  ..++.++++.++...+..++..........++|.|+++.     +|+++.+.+.+.+..+++.+++. ++.+++.||
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~-~~~g~l~~~  314 (451)
T 1pw4_A          241 KQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEV-----KHFALDKSSWAYFLYEYAGIPGT-LLCGWMSDK  314 (451)
T ss_dssp             THHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTB-----SCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred             ccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            1  146778899999988888888888888889999998875     68999999999999999999998 588999999


Q ss_pred             h--ChhHHHHHHHHHHH-HHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHHHH
Q 013991          351 L--GPIMVARIAGVLTI-PLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWFV  427 (432)
Q Consensus       351 ~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~  427 (432)
                      +  ++|+.+..+..+.. ++++++.+....+   . ....+...+.+++.....+....+..+..|++.||++.|.++..
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  390 (451)
T 1pw4_A          315 VFRGNRGATGVFFMTLVTIATIVYWMNPAGN---P-TVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLF  390 (451)
T ss_dssp             TSTTCHHHHHHHHHHHHHHHHHHTTSCCTTC---H-HHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHH
T ss_pred             HhcCCchhHHHHHHHHHHHHHHHHHHhcccC---H-HHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHH
Confidence            9  98888877766655 5555544332111   1 22334445556666777788889999999999999999998765


Q ss_pred             h
Q 013991          428 K  428 (432)
Q Consensus       428 ~  428 (432)
                      .
T Consensus       391 ~  391 (451)
T 1pw4_A          391 G  391 (451)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=100.00  E-value=6.8e-34  Score=272.12  Aligned_cols=348  Identities=14%  Similarity=0.106  Sum_probs=266.8

Q ss_pred             CCchhHHHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHH
Q 013991           38 LPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM  117 (432)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~  117 (432)
                      ..++.+..+....++.++......+..|.+.+++|.+..+      .|++.+++.++..++++++|+++||+|||+++++
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~   96 (438)
T 3o7q_A           23 SYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQ------AGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIIT   96 (438)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHH------HHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHH
Confidence            3445666777788888888889999999999999999999      9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH---hhhhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhh
Q 013991          118 GTASVVIFNTLF---GLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL  193 (432)
Q Consensus       118 ~~~~~~~~~~~~---~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  193 (432)
                      +.++.+++.+++   +++++++.++++|++.|++.+...+. .++++|++|+++|++++++.+.+.++|..++|.+++.+
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  176 (438)
T 3o7q_A           97 GLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL  176 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred             HHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999   88899999999999999998888775 99999999999999999999999999999999999999


Q ss_pred             c-ccCCcCC----------CcccccccccCccchHHHHHHHHHHHHHHHHHhh--cccccCCCCCCCcchhhhHHHhhhh
Q 013991          194 A-QPAEKYP----------NLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFW--LPETLHRHNDDDDSCDVSYDALESA  260 (432)
Q Consensus       194 ~-~~~~~~~----------~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~  260 (432)
                      . +..+...          ...+|+... ..+|+.++.+.++..++..+..++  .||++++.++++++.          
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~----------  245 (438)
T 3o7q_A          177 ILSNVPHQSQDVLDKMSPEQLSAYKHSL-VLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQG----------  245 (438)
T ss_dssp             HHTSSCCCCHHHHHHSCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSSTT----------
T ss_pred             HhcccccccccccccCCcchhhhhhhhh-hhhHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccccc----------
Confidence            8 4110000          000000000 111666666666555544333333  344433221111100          


Q ss_pred             hhhhhhhhccCCCCccccccchhHHHHHHHHHHHHHHhhhHHHHHHhh-hcCCCcCCCcccccchhhHHHHHHHHHHHHH
Q 013991          261 SAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLW-ANSPKKLGGLNYSTQMVGEVLAITGFSLLVF  339 (432)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~  339 (432)
                               +.....++++|+|.++...+..++..........+.|.| .++.     +|++..+.+...+...++..++
T Consensus       246 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~  311 (438)
T 3o7q_A          246 ---------SFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEI-----PGMTAGFAANYLTGTMVCFFIG  311 (438)
T ss_dssp             ---------SHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-----TTCCHHHHHHHHHHHHHHHHHH
T ss_pred             ---------chhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-----CCcchhHHHHHHHHHHHHHHHH
Confidence                     011245667889999998888888888888888899998 7765     6899999999999999999998


Q ss_pred             HHHhHHHHHHHhChhHHHHHHHHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhh
Q 013991          340 QLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYT  419 (432)
Q Consensus       340 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~  419 (432)
                      . ++.+++.||+++|+.+..+.++..++++++.+.....       ......+.+++.+...|...++..+..|++ +++
T Consensus       312 ~-~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~  382 (438)
T 3o7q_A          312 R-FTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-------GLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKY  382 (438)
T ss_dssp             H-HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHH-------HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHH
T ss_pred             H-HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcH-------HHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccc
Confidence            8 6899999999999999988888777766655443221       122334556677778889999989999877 777


Q ss_pred             hhhHHH
Q 013991          420 LSCHFW  425 (432)
Q Consensus       420 ~~~~~~  425 (432)
                      +.+...
T Consensus       383 ~~~~~~  388 (438)
T 3o7q_A          383 GSSFIV  388 (438)
T ss_dssp             HHHHHH
T ss_pred             hhhHHH
Confidence            666554

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=100.00  E-value=6.6e-32  Score=262.21  Aligned_cols=366  Identities=12%  Similarity=0.012  Sum_probs=253.7

Q ss_pred             HHHHHHHhhccccchhhhHHHHHHHhcCCccc--cchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHH
Q 013991           46 IWIIVLCTALPISSLFPFLYFMIKDFQIAKRE--EDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVV  123 (432)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~  123 (432)
                      ..++.++.+++...++..+|.+.++++.+...  ...+...|++.+++.+|..++++++|+++||+|||++++++.+++.
T Consensus        17 a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~   96 (491)
T 4gc0_A           17 ATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFF   96 (491)
T ss_dssp             HHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            34566777888888889999999888654332  1233448899999999999999999999999999999999999999


Q ss_pred             HHHHHHh------------------hhhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHH
Q 013991          124 IFNTLFG------------------LSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLI  184 (432)
Q Consensus       124 ~~~~~~~------------------~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~  184 (432)
                      ++.++++                  +++|+++++++|+++|++.|...+. .++++|+.|+++|++..+..+.+..+|..
T Consensus        97 i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~  176 (491)
T 4gc0_A           97 ISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQL  176 (491)
T ss_dssp             HHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhh
Confidence            9999998                  4789999999999999998888775 99999999999999999999999999999


Q ss_pred             HHHHHHhhhcccCCcCCCcccccccccCccchHHHHHHHHHHHHHHHHHhhcccccCCCCCCCcchhhhHH--Hhhhh--
Q 013991          185 IGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYD--ALESA--  260 (432)
Q Consensus       185 ~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~--~~~~~--  260 (432)
                      +++.++..+..       ..++.... .+.|+.++....+..++.++..+++||+|++...+.++++....  +....  
T Consensus       177 ~~~~~~~~~~~-------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~  248 (491)
T 4gc0_A          177 LVYCVNYFIAR-------SGDASWLN-TDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTL  248 (491)
T ss_dssp             HHHHHHHHHHT-------TSCTTTTT-TTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hhhhcchhhcc-------cccccccc-chhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCch
Confidence            99999888876       33333333 56688888888888777778888999999875544433322211  00000  


Q ss_pred             -----hhhh-hhhhccCCCCccccccchhHHHHHHHHHHHHHHh-hhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHH
Q 013991          261 -----SAEV-KEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHD-MAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITG  333 (432)
Q Consensus       261 -----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~  333 (432)
                           .+.. ...+.++.......++.+..........+..... .....+.+.....      .+.+...........+
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~  322 (491)
T 4gc0_A          249 ATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKT------LGASTDIALLQTIIVG  322 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------SSCCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHh------cCCCccchhhHHHHHH
Confidence                 0000 0011111122223333444433333333332222 2222233333322      3556666666667777


Q ss_pred             HHHHHHHHHhHHHHHHHhChhHHHHHHHHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcccc
Q 013991          334 FSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVV  413 (432)
Q Consensus       334 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  413 (432)
                      +...++. +++.++.||+|||+.+..+.....++++.++......... +..+.........+..+..|..+.+.+|..|
T Consensus       323 ~~~~~~~-~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fP  400 (491)
T 4gc0_A          323 VINLTFT-VLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPG-IVALLSMLFYVAAFAMSWGPVCWVLLSEIFP  400 (491)
T ss_dssp             HHHHHHH-HHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCH-HHHHHHHHHHHHHHHTTTTHHHHHHHHHSSC
T ss_pred             HHHHHHH-HHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHHHhHHHHHHHHHHHHhCC
Confidence            7777777 5889999999999999988888777776665544333222 2222222333334445556788899999999


Q ss_pred             ccchhhhhhHHHHH
Q 013991          414 RVLTYTLSCHFWFV  427 (432)
Q Consensus       414 ~~~~g~~~~~~~~~  427 (432)
                      .+.|+++.|+...+
T Consensus       401 t~~R~~~~g~~~~~  414 (491)
T 4gc0_A          401 NAIRGKALAIAVAA  414 (491)
T ss_dssp             TTTHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHH
Confidence            99999988876554

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.98  E-value=5.9e-32  Score=253.29  Aligned_cols=330  Identities=14%  Similarity=0.148  Sum_probs=255.7

Q ss_pred             HHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHH
Q 013991           44 FSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVV  123 (432)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~  123 (432)
                      +.++...++..+......+.+|.+.+++|.++.+      .+++.+.+.++..+++++.|+++||+|||+++.++.++..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~   76 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGA------VQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFM   76 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHH------HHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence            4556677788888888999999999999999999      9999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCCcCCC
Q 013991          124 IFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPN  202 (432)
Q Consensus       124 ~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~  202 (432)
                      ++.++++++++++.+++.|++.|++.+...+. .+++.|++|+++|++++++.+...++|..++|.+++++.+       
T Consensus        77 ~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~-------  149 (375)
T 2gfp_A           77 LATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT-------  149 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSC-------
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-------
Confidence            99999999999999999999999998888776 9999999999999999999999999999999999999987       


Q ss_pred             cccccccccCccchHHHHHHHHHHHHHHH-HHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhccCCCCccccccc
Q 013991          203 LFSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKN  281 (432)
Q Consensus       203 ~~gw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (432)
                               .++|+.++.+.++..++..+ ..+.+||+++++++++                      +.....++.+|+
T Consensus       150 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~  198 (375)
T 2gfp_A          150 ---------MWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPRT----------------------RLLTSYKTLFGN  198 (375)
T ss_dssp             ---------HHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCCC----------------------CTTTCSTHHHHH
T ss_pred             ---------hccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCcccc----------------------cHHHHHHHHhcC
Confidence                     44556666766666655444 4456777654432211                      122355677888


Q ss_pred             hhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhChhHHHHHHH
Q 013991          282 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG  361 (432)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  361 (432)
                      |+++...+..++..........+.|.|.++.     +|+++.+.+.+.....++..++. ++.+++.||.+++  ...+.
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~g~~~~~~~~~~~~~~-~~~~~l~~r~~~~--~~~~~  270 (375)
T 2gfp_A          199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAV-----LGLSSMTVSILFILPIPAAFFGA-WFAGRPNKRFSTL--MWQSV  270 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHH-----HHHHHHHHHHHHHTHHHHHHHHH-HHHHTTTTHHHHH--HHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH--HHHHH
Confidence            9988888888877777777777777776654     68899999999999999988887 5888888887762  22222


Q ss_pred             HH-HHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHHHHh
Q 013991          362 VL-TIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWFVK  428 (432)
Q Consensus       362 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~~  428 (432)
                      .. ...+...+.......  .......+...+.+++.+...+....+..|..| ++||++.|......
T Consensus       271 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~  335 (375)
T 2gfp_A          271 ICCLLAGLLMWIPDWFGV--MNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQ  335 (375)
T ss_dssp             HHHHHTSSSSSHHHHHHH--HHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhcc--ccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHH
Confidence            22 222222111111101  111223344455566777778888999999998 78999999887654

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.97  E-value=3.3e-29  Score=243.26  Aligned_cols=360  Identities=13%  Similarity=0.121  Sum_probs=239.2

Q ss_pred             hhHHHHHHHHHHhhccccchhhhHH-HHHHH-----hcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhc-cCChH
Q 013991           41 TELFSIWIIVLCTALPISSLFPFLY-FMIKD-----FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKP  113 (432)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~Grr~  113 (432)
                      +.++.+....+...+......+.++ ++.++     +|.+..+      .+++.+.+.++..+++++.|+++|| +|||+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~   86 (491)
T 4aps_A           13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRAT------AASIMAIYASMVYLSGTIGGFVADRIIGARP   86 (491)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhccccchH
Confidence            4556666666666666666656665 44455     8999999      9999999999999999999999999 89999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhccchhhH-Hhhhhhhcccch--hhhhhhhHHHHHHHHHHHHHHHH
Q 013991          114 VIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEH--QALGLSTVSTAWGIGLIIGPALG  190 (432)
Q Consensus       114 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~g~~~~  190 (432)
                      ++.++.++.+++.++++++++++.++++|+++|++.+...+. .++++|++|+++  |+.++++.+.+.++|..++|.++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  166 (491)
T 4aps_A           87 AVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIV  166 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998888776 999999999988  77788889999999999999999


Q ss_pred             hhhcccCCcCCCcccccccccCccchHHHHHHHHHHHHHHHHHhh-cccccCCCCCCCc---chhhhHHHhhh-------
Q 013991          191 GFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFW-LPETLHRHNDDDD---SCDVSYDALES-------  259 (432)
Q Consensus       191 ~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~---~~~~~~~~~~~-------  259 (432)
                      +.+.+                ..+|+.++.+.++..++.++...+ .|+..++..++++   +.+...+..+.       
T Consensus       167 ~~l~~----------------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~  230 (491)
T 4aps_A          167 GAAQE----------------AAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAG  230 (491)
T ss_dssp             HHHHH----------------HSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHH
T ss_pred             HHHHh----------------hhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHH
Confidence            99987                344555556666555544433332 2322221111111   11111010000       


Q ss_pred             -----------hhh--hh-----------------hhhhccCCCCccccccchhHHHHHHHHHHHHHHhhhHHHHHHhhh
Q 013991          260 -----------ASA--EV-----------------KEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWA  309 (432)
Q Consensus       260 -----------~~~--~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (432)
                                 ...  +.                 ....++.........+....+...+...+...........++.|.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (491)
T 4aps_A          231 FIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFA  310 (491)
T ss_dssp             HHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHH
T ss_pred             HHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence                       000  00                 000000111111111222334444445555555556666777777


Q ss_pred             cCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhChhHHHH-----HHHHHHHHHHHHhhHHHhhh---hhH
Q 013991          310 NSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVAR-----IAGVLTIPLLTSYPYIAMLS---GFG  381 (432)
Q Consensus       310 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~---~~~  381 (432)
                      .+.     .+.+....+.......+...++. ++.+++.||++||+...     .+..+..+++.++.......   ...
T Consensus       311 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (491)
T 4aps_A          311 AER-----VDSSWFPVSWFQSLNPLFIMLYT-PFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKV  384 (491)
T ss_dssp             HHS-----CCCSSSCSGGGTTHHHHHHHHHH-HHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTC
T ss_pred             HHH-----hccCccCHHHHhccchHHHHHHH-HHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence            654     45555677777788888888887 57888999999876544     66666666666655443110   001


Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHHHHh
Q 013991          382 LAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWFVK  428 (432)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~~  428 (432)
                      ......+..++.+++.+...+..+.+..+..|++.||++.|+++...
T Consensus       385 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~  431 (491)
T 4aps_A          385 SPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSS  431 (491)
T ss_dssp             CTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            11233444555666667777888999999999999999999887654

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.93  E-value=9.8e-26  Score=213.95  Aligned_cols=341  Identities=11%  Similarity=0.094  Sum_probs=211.1

Q ss_pred             CchhHHHHHHHHHHhhccccchhhhHHHHH-HHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHH
Q 013991           39 PITELFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM  117 (432)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~  117 (432)
                      +.+.++.+....++.........+.+|.+. +++|.+..+      .|++.+.+.++..++++++|+++||+|||+++++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~------~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~   78 (417)
T 2cfq_A            5 KNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSD------TGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLW   78 (417)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTT------SHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHH
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence            345566666666666666667778888654 568999999      9999999999999999999999999999999998


Q ss_pred             HHHHHHHHH---HHHhhhhhHH-HHHHHHHHHhhhccchhhH-Hhhhhhhccc--chhhhhhhhHHHHHHHHHHHHHHHH
Q 013991          118 GTASVVIFN---TLFGLSVNFW-MAVLTRFLLGSLNGLLGPI-KAYACEIFRE--EHQALGLSTVSTAWGIGLIIGPALG  190 (432)
Q Consensus       118 ~~~~~~~~~---~~~~~~~~~~-~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~g~~~~  190 (432)
                      +..+..++.   ....+++... .+...+.+.|++.+...+. ...+.++.++  ++|+...+......++|..++|.++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~  158 (417)
T 2cfq_A           79 IITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIV  158 (417)
T ss_dssp             HHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHH
Confidence            887765532   2223333221 2345566666655543332 3344444433  4567777788788899999999999


Q ss_pred             hhhcccCCcCCCcccccccccCccchHHHHHHHHHHHHHHHHHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhcc
Q 013991          191 GFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGR  270 (432)
Q Consensus       191 ~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (432)
                      +++.+        .+         |+.++++.++..++.++..+..+|++++..+++++.+.             +.++.
T Consensus       159 ~~l~~--------~~---------~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~  208 (417)
T 2cfq_A          159 GIMFT--------IN---------NQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGA-------------NHSAF  208 (417)
T ss_dssp             HHHHH--------HC---------SHHHHTTTTTTTTTHHHHSCSSCCCCSCSSCSSSSSSS-------------CCCCC
T ss_pred             HHHHH--------hc---------hhHHHHHHHHHHHHHHHHHHHcCccccccccccccccc-------------ccccc
Confidence            99874        22         44444544444333333334444332211100000000             00000


Q ss_pred             CCCCccccccchhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHH
Q 013991          271 EATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI  350 (432)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~  350 (432)
                      .....++++|++.++...+..+........+...+|.|+.+...  ..+.+....+...+...+..+++. ++.+++.||
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~-~~~g~l~dr  285 (417)
T 2cfq_A          209 SLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFA--TGEQGTRVFGYVTTMGELLNASIM-FFAPLIINR  285 (417)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS--SHHHHTHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred             cHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccCCChhHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            11123457788888776655454444444555567777644311  113345566777887777777776 588999999


Q ss_pred             hChhHHHHHHHHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHH
Q 013991          351 LGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHF  424 (432)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~  424 (432)
                      +++|+.+..+..+..+.++.+.+.....      .+.+...+.+++.....+....+.+|..|++.||++++..
T Consensus       286 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~  353 (417)
T 2cfq_A          286 IGGKNALLLAGTIMSVRIIGSSFATSAL------EVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVC  353 (417)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHHTTCCSHH------HHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             hcHHHHHHHHHHHHHHHHHHHHHhccHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence            9999998887777666655544322111      1222333333444445566678999999999999988874

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.92  E-value=1.5e-24  Score=212.14  Aligned_cols=171  Identities=15%  Similarity=0.203  Sum_probs=141.6

Q ss_pred             hHHHHHHHHHHhhccccchhhhHH-HHHHHhc------CCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhcc-CChH
Q 013991           42 ELFSIWIIVLCTALPISSLFPFLY-FMIKDFQ------IAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-GRKP  113 (432)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-Grr~  113 (432)
                      .++.+.+..++..+......+.++ ++.+++|      .+..+      .+++.+++.++..+++++.|+++||+ |||+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~------~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~   86 (524)
T 2xut_A           13 QIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAV------AKDVFHSFVIGVYFFPLLGGWIADRFFGKYN   86 (524)
T ss_dssp             CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTT------HHHHHHHHHHHHHHTHHHHHHHHTTSSCSHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence            344455566666666666666666 4567789      89998      99999999999999999999999999 9999


Q ss_pred             HHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHhhhccchhhH-Hhhhhhhcccchhhhhhhh---HHHHHHHHHHHHHH
Q 013991          114 VIIMGTASVVIFNTLFGLSV-NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLST---VSTAWGIGLIIGPA  188 (432)
Q Consensus       114 ~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~---~~~~~~~g~~~g~~  188 (432)
                      ++.++.++.+++.+++++++ +++.+++.|++.|++.+...+. .+++.|++|+++|+++.+.   .+.+.++|..+||.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~  166 (524)
T 2xut_A           87 TILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASL  166 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998 9999999999999998888776 9999999999999876666   88999999999999


Q ss_pred             HHhhhcccCCcCCCcccccccccCccchHHHHHHHHHHHHHHHHHh
Q 013991          189 LGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAF  234 (432)
Q Consensus       189 ~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (432)
                      +++.+.+                ..+|+.++.+.++..++..+..+
T Consensus       167 ~~~~l~~----------------~~g~~~~f~~~~~~~~~~~~~~~  196 (524)
T 2xut_A          167 SMPLLLK----------------NFGAAVAFGIPGVLMFVATVFFW  196 (524)
T ss_dssp             TSTHHHH----------------TSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhc----------------cccHHHHHHHHHHHHHHHHHHHH
Confidence            9999987                34455555666666555444433

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.58  E-value=9.8e-15  Score=139.54  Aligned_cols=175  Identities=12%  Similarity=0.060  Sum_probs=140.5

Q ss_pred             chhHHHHHHHHHHhhccccchhhhHHHHHHH-hcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhcc--CChHHHH
Q 013991           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY--GRKPVII  116 (432)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~--Grr~~l~  116 (432)
                      .+.++...+..++............|.+.++ +|.+..+      .+++.+...++..++.++.|++.||+  |||+.+.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~  324 (451)
T 1pw4_A          251 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDK------SSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATG  324 (451)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHH
Confidence            3556666666666777667777788877766 8999888      99999999999999999999999999  9999988


Q ss_pred             HHHHHHH-HHHHHHhhh--hhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHH-HHHHHHHHHh
Q 013991          117 MGTASVV-IFNTLFGLS--VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGI-GLIIGPALGG  191 (432)
Q Consensus       117 ~~~~~~~-~~~~~~~~~--~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~  191 (432)
                      ++..+.. ++.++..+.  .+.+.+.+..++.|++.+...+. .+++.|.+|+++|++++++.+....+ |..++|.+.+
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g  404 (451)
T 1pw4_A          325 VFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVG  404 (451)
T ss_dssp             HHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            8877766 666666665  36777788888889887776665 89999999999999999999999999 9999999999


Q ss_pred             hhcccCCcCCCcccccccccCccchHHHHHHHHHHHHHHHHHhhc
Q 013991          192 FLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL  236 (432)
Q Consensus       192 ~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (432)
                      .+.+                ..++...+.+.+++.++..+..+.+
T Consensus       405 ~l~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~  433 (451)
T 1pw4_A          405 YTVD----------------FFGWDGGFMVMIGGSILAVILLIVV  433 (451)
T ss_dssp             HHHH----------------SSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHH----------------hcCcHHHHHHHHHHHHHHHHHHHHH
Confidence            9998                4445555566666666554444443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.48  E-value=2e-13  Score=129.17  Aligned_cols=142  Identities=18%  Similarity=0.117  Sum_probs=112.3

Q ss_pred             hhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhccchhhH-Hhhhhhh
Q 013991           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEI  162 (432)
Q Consensus        84 ~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~  162 (432)
                      .++..+...++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+. ..+++|.
T Consensus       261 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  340 (417)
T 2cfq_A          261 FGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQ  340 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            677888888888899999999999999999999998888888878877778888887777778775555554 8899999


Q ss_pred             cccchhhhhhhh-HHHHHHHHHHHHHHHHhhhcccCCcCCCcccccccccCccchHHHHHHHHHHHHHHHH-Hhhccccc
Q 013991          163 FREEHQALGLST-VSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPETL  240 (432)
Q Consensus       163 ~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~  240 (432)
                      +|++.|+++.+. ++....+|..++|.++|.+.+                ..++...+.+.++..++..+. .+..||++
T Consensus       341 ~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~----------------~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~  404 (417)
T 2cfq_A          341 FEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE----------------SIGFQGAYLVLGLVALGFTLISVFTLSGPG  404 (417)
T ss_dssp             SCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHH----------------HSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred             CCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHH----------------hcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence            999999999998 488888999999999999987                344555556666665554444 34455543


Q ss_pred             C
Q 013991          241 H  241 (432)
Q Consensus       241 ~  241 (432)
                      +
T Consensus       405 ~  405 (417)
T 2cfq_A          405 P  405 (417)
T ss_dssp             T
T ss_pred             c
Confidence            3

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.47  E-value=4.7e-13  Score=127.31  Aligned_cols=146  Identities=10%  Similarity=0.044  Sum_probs=118.0

Q ss_pred             hhHHHHHHHHHHhhccccchhhhHHHH-HHH-hcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHH
Q 013991           41 TELFSIWIIVLCTALPISSLFPFLYFM-IKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (432)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~  118 (432)
                      +.++...+..++............|.+ .++ +|.+..+      .++..+...++..++.++.|+++||+|||+++.++
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~  331 (438)
T 3o7q_A          258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGF------AANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAY  331 (438)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhH------HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence            445545555555555555666677766 555 5999888      99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcc
Q 013991          119 TASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (432)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (432)
                      .++..++.++..+.++.+.++.. ++.|++.+...+. .++..|.+|++ |+.+.++.. ...+|..++|.+.|.+.+
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~  406 (438)
T 3o7q_A          332 ALIAMALCLISAFAGGHVGLIAL-TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSD  406 (438)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHH-HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHH
Confidence            99999998888888877665544 7788887777775 88889999866 888888776 566999999999999998

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.38  E-value=2.5e-12  Score=124.26  Aligned_cols=146  Identities=10%  Similarity=-0.008  Sum_probs=111.9

Q ss_pred             HHHHHHHHHhhccccchhhhHHHHHHH-hcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHH-----H
Q 013991           44 FSIWIIVLCTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII-----M  117 (432)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~-----~  117 (432)
                      ..+++..++...........++.+.++ ++.+..+      .++..+...++..++.++.|++.||+|||+...     .
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~  359 (491)
T 4aps_A          286 IPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFP------VSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAV  359 (491)
T ss_dssp             HHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSC------SGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccC------HHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHH
Confidence            334444444444445555566655544 6666566      888899999999999999999999999987654     6


Q ss_pred             HHHHHHHHHHHHhhhh---------hHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHH
Q 013991          118 GTASVVIFNTLFGLSV---------NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGP  187 (432)
Q Consensus       118 ~~~~~~~~~~~~~~~~---------~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~  187 (432)
                      +.++.+++.++.....         +.+.+.+.-++.|++.+...+. .+++.|.+|+++|+++.++.+....+|..++|
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~  439 (491)
T 4aps_A          360 GLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNA  439 (491)
T ss_dssp             HHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777766665543         6677778888899988887665 99999999999999999999999999999999


Q ss_pred             HHHhhhcc
Q 013991          188 ALGGFLAQ  195 (432)
Q Consensus       188 ~~~~~l~~  195 (432)
                      .+.+.+.+
T Consensus       440 ~~~~~~~~  447 (491)
T 4aps_A          440 QLVTLYNA  447 (491)
T ss_dssp             HHGGGGGG
T ss_pred             HHHHHHhc
Confidence            99988875

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.37  E-value=6.5e-12  Score=121.32  Aligned_cols=183  Identities=12%  Similarity=0.048  Sum_probs=122.5

Q ss_pred             HHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHH
Q 013991           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (432)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~  124 (432)
                      ......+....+...+....+.+.++.+.+...      .........+...++.++.+++.||+|||+.++.+.....+
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~  354 (491)
T 4gc0_A          281 GVMLSIFQQFVGINVVLYYAPEVFKTLGASTDI------ALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAI  354 (491)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhHHHhcchHHHHhcCCCccc------hhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHH
Confidence            334444444555556666667888888887776      66777778888899999999999999999999999888887


Q ss_pred             HHHHHhhhh-----hHHHHHHHH-HHHhhhccchhhHHhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcccCC
Q 013991          125 FNTLFGLSV-----NFWMAVLTR-FLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE  198 (432)
Q Consensus       125 ~~~~~~~~~-----~~~~l~~~r-~~~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~  198 (432)
                      +.+..+...     +...+...- +..+.+.+.......+.+|.+|.+.|++++++......+|..+++.+.+.+.+.. 
T Consensus       355 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~-  433 (491)
T 4gc0_A          355 GMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNS-  433 (491)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHH-
T ss_pred             HHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            776655431     222222222 2223333333334889999999999999999999999999999988877765410 


Q ss_pred             cCCCcccccccccCccchHHHHHHHHHHHH-HHHHHhhcccccCCC
Q 013991          199 KYPNLFSSESLFGKFPYFLPCLCISLFAFG-VTIAAFWLPETLHRH  243 (432)
Q Consensus       199 ~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~  243 (432)
                             |..  ...++..++++.++++++ .++..+++||++.+.
T Consensus       434 -------~~~--~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~t  470 (491)
T 4gc0_A          434 -------WLV--AHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKT  470 (491)
T ss_dssp             -------HHH--HHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCC
T ss_pred             -------HHH--hhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCC
Confidence                   000  012233344555555555 445567899987653

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.01  E-value=3e-11  Score=112.39  Aligned_cols=146  Identities=13%  Similarity=0.071  Sum_probs=107.7

Q ss_pred             hhHHHHHHHHHHhhccccchhhhHHHHH-HHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHH
Q 013991           41 TELFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (432)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~  119 (432)
                      +.++...+..++............|.+. +++|.++.+      .+++.+...++..++.++.|++.||+|++.  ..+.
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~  270 (375)
T 2gfp_A          199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMT------VSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSV  270 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHH------HHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence            3444445555555555555556666554 448888888      999999999999999999999999998832  2333


Q ss_pred             HH-HHHHHH--HHhh--hhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhh
Q 013991          120 AS-VVIFNT--LFGL--SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL  193 (432)
Q Consensus       120 ~~-~~~~~~--~~~~--~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  193 (432)
                      .+ ...+..  ....  .++.+.+++..++.|++.+...+. .+++.|..| ++|+++.++.+....+|..++|.+.+.+
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l  349 (375)
T 2gfp_A          271 ICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAML  349 (375)
T ss_dssp             HHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHH
T ss_pred             HHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22 222222  2222  246777778888899988777775 899999998 8999999999999999999999999988


Q ss_pred             cc
Q 013991          194 AQ  195 (432)
Q Consensus       194 ~~  195 (432)
                      .+
T Consensus       350 ~~  351 (375)
T 2gfp_A          350 PQ  351 (375)
T ss_dssp             HH
T ss_pred             hc
Confidence            76

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.81  E-value=1.5e-08  Score=98.55  Aligned_cols=112  Identities=13%  Similarity=0.025  Sum_probs=88.2

Q ss_pred             hhHHHHHHhHHHHHHHHhhhhhh----hccCC----hHHHHHHHHHHHHHHHHHhhh---------hhHHHHHHHHHHHh
Q 013991           84 AGYVGSSFMFGRALTSVFWGLVA----DRYGR----KPVIIMGTASVVIFNTLFGLS---------VNFWMAVLTRFLLG  146 (432)
Q Consensus        84 ~~~~~s~~~~~~~~~~~~~G~l~----dr~Gr----r~~l~~~~~~~~~~~~~~~~~---------~~~~~l~~~r~~~G  146 (432)
                      .+++.+...++..+..++.+++.    ||.|+    ++.+.++.++.+++.++.++.         .+.+.+++..++.|
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  416 (524)
T 2xut_A          337 PAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLT  416 (524)
T ss_dssp             HHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHH
Confidence            67777777777788888888775    55543    356677778777777776663         36677778888999


Q ss_pred             hhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhcc
Q 013991          147 SLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (432)
Q Consensus       147 ~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (432)
                      ++.+...+. .+++.|..|+++|++++|+.+....+|..+||.+.+.+.+
T Consensus       417 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~  466 (524)
T 2xut_A          417 FGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKS  466 (524)
T ss_dssp             HHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            988887775 9999999999999999999999999999999999999886

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	432
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	7e-11
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	5e-06

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 61.2 bits (147), Expect = 7e-11
 Identities = 41/343 (11%), Positives = 83/343 (24%), Gaps = 20/343 (5%)

Query: 84  AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRF 143
            G+  S        +    G V+DR   +  +  G           G       ++   F
Sbjct: 61  LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMF 120

Query: 144 LLGSLNGLLGPIKAYAC-----EIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE 198
           +L  L G    +    C       + ++ +   +S  + A  +G  I P L         
Sbjct: 121 VLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLL------ 174

Query: 199 KYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALE 258
                     +     +       +  A  V + AF +     +        +   D  +
Sbjct: 175 ---------GMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPD 225

Query: 259 SASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGL 318
             + + ++E   +    + +L N  L    I      L      +    +    K     
Sbjct: 226 DYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALD 285

Query: 319 NYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLS 378
             S        A    +LL   +S   F        +       +   +    P      
Sbjct: 286 KSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTV 345

Query: 379 GFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLS 421
                 ++        +L       L   +        T    
Sbjct: 346 DMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFG 388

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 46.3 bits (108), Expect = 5e-06
 Identities = 20/211 (9%), Positives = 55/211 (26%), Gaps = 14/211 (6%)

Query: 42  ELFSIWIIVLCTALPISSLFPFL-YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSV 100
             +   +        + + FPF   ++     I+       S  G + ++      L   
Sbjct: 8   NFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHIS------KSDTGIIFAAISLFSLLFQP 61

Query: 101 FWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP------ 154
            +GL++D+ G +  ++     +++    F + +   +      +   + G+         
Sbjct: 62  LFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAG 121

Query: 155 -IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKF 213
                A                     +G  +G ++ G +     ++     S       
Sbjct: 122 APAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILA 181

Query: 214 PYFLPCLCISLFAFGVTIAAFWLPETLHRHN 244
                    +  +  V  A            
Sbjct: 182 VLLFFAKTDAPSSATVANAVGANHSAFSLKL 212

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	432
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	100.0
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.93
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.53
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.42

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.6e-33  Score=266.18  Aligned_cols=358  Identities=10%  Similarity=0.004  Sum_probs=253.4

Q ss_pred             chhHHHHHHHHHHhhccccchhhhHHHHHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHH
Q 013991           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (432)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~  119 (432)
                      |..+..+++..+...++...+....|.+. |+|.|.++      .|++.+++.+++.++++++|+++||+|||+++.++.
T Consensus        24 w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~------~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~   96 (447)
T d1pw4a_          24 WQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGD------LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGL   96 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSC------HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHH
Confidence            33444566667777777777777778665 68999999      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhh----hHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhhhc
Q 013991          120 ASVVIFNTLFGLSV----NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (432)
Q Consensus       120 ~~~~~~~~~~~~~~----~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  194 (432)
                      ++.+++.+++++++    +++.+++.|++.|++.|...+. .+++.|++|+++|++++++.+.+..+|..++|.+++.+.
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~  176 (447)
T d1pw4a_          97 ILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM  176 (447)
T ss_dssp             HHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred             HHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHh
Confidence            99999999888764    6778999999999998887775 999999999999999999999999999999999988877


Q ss_pred             ccCCcCCCcccccccccCccchHHHHHHHHHHHH-HHHHHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhccCCC
Q 013991          195 QPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFG-VTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREAT  273 (432)
Q Consensus       195 ~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (432)
                      ..      ..+|++.+         .+.+...++ .++..+.++|+++.......++... +..++..++.+++......
T Consensus       177 ~~------~~~w~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  240 (447)
T d1pw4a_         177 AW------FNDWHAAL---------YMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKN-DYPDDYNEKAEQELTAKQI  240 (447)
T ss_dssp             HH------TCCSTTCT---------HHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCC-C-------------CCTHH
T ss_pred             hh------hhcccccc---------hhhhhhHHHHHHHHHHhcccchhhcccchhhhhhh-hcccchhhccccccchhhH
Confidence            52      22444443         555554444 3444455666554433222111110 1111111111111122223


Q ss_pred             CccccccchhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHhCh
Q 013991          274 PKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGP  353 (432)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~  353 (432)
                      ..+..++++.++......++..........+.+.|+.+.     ++++..+.+.......+..+++. ++.+++.||.++
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~  314 (447)
T d1pw4a_         241 FMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEV-----KHFALDKSSWAYFLYEYAGIPGT-LLCGWMSDKVFR  314 (447)
T ss_dssp             HHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTB-----SCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHTST
T ss_pred             HHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccc-----cccccchhhhhhhcchhhhhhhh-hhhhhhhhhccc
Confidence            355678889988888888888888888888899888776     78899999999999999999998 589999999987


Q ss_pred             hHHHHHHHHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHHHH
Q 013991          354 IMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFWFV  427 (432)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~  427 (432)
                      ++..........+............. .......+..++.+++.....+.......|..|++.||++.|..+..
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~  387 (447)
T d1pw4a_         315 GNRGATGVFFMTLVTIATIVYWMNPA-GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLF  387 (447)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTTSCCT-TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHH
T ss_pred             cccccccchhHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence            65443333222222111111111111 11223334445556667777888889999999999999999987654

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=8.1e-25  Score=204.09  Aligned_cols=341  Identities=11%  Similarity=0.075  Sum_probs=224.0

Q ss_pred             chhHHHHHHHHHHhhccccchhhhHHH-HHHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHH
Q 013991           40 ITELFSIWIIVLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (432)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~  118 (432)
                      .++++.+.+..++..+......|.+|. +.+++|.|..+      .|++.+++.++..++++++|+++||+|||++++++
T Consensus         6 n~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~------~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~   79 (417)
T d1pv7a_           6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSD------TGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWI   79 (417)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH------HHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence            467788888888888888888899986 56779999999      99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhHHHHH----HHHHHHhhhccchhh-HHhhhhhhcc--cchhhhhhhhHHHHHHHHHHHHHHHHh
Q 013991          119 TASVVIFNTLFGLSVNFWMAV----LTRFLLGSLNGLLGP-IKAYACEIFR--EEHQALGLSTVSTAWGIGLIIGPALGG  191 (432)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~l~----~~r~~~G~~~g~~~~-~~~~i~~~~~--~~~r~~~~~~~~~~~~~g~~~g~~~~~  191 (432)
                      ..+..++..+.....+.....    +.+.+.+.+.+.... ......+..+  .+++.+..+........+..++|.+++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (417)
T d1pv7a_          80 ITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVG  159 (417)
T ss_dssp             HHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhcccccccccccc
Confidence            999999888888876655443    444444444333322 3333333332  234556677778888899999999999


Q ss_pred             hhcccCCcCCCcccccccccCccchHHHHHHHHHHHHHHHHHhhcccccCCCCCCCcchhhhHHHhhhhhhhhhhhhccC
Q 013991          192 FLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGRE  271 (432)
Q Consensus       192 ~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (432)
                      .+.+                ...++..........+...+..+..+|+++..++++++.+..              +...
T Consensus       160 ~l~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~  209 (417)
T d1pv7a_         160 IMFT----------------INNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANH--------------SAFS  209 (417)
T ss_dssp             HHHH----------------HCHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHSCC--------------CCCC
T ss_pred             cccc----------------ccccccccchhhHHHHHHHHHHHHhcccccchhhhhhhhhhc--------------cccc
Confidence            9875                111222223333333444455566666655443322111100              0000


Q ss_pred             CCCccccccchhHHHHHHHHHHHHHHhhhHHHHHHhhhcCCCcCCCcccccchhhHHHHHHHHHHHHHHHHhHHHHHHHh
Q 013991          272 ATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL  351 (432)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~  351 (432)
                      ........+++..+....................+.+....  ....+.+....+.......++..++. .+.+++.||.
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~r~  286 (417)
T d1pv7a_         210 LKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSF--FATGEQGTRVFGYVTTMGELLNASIM-FFAPLIINRI  286 (417)
T ss_dssp             HHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--SSCHHHHHHHHHHHHHHHHHHHHHHH-TTHHHHHHHH
T ss_pred             ccccccccccccccchhhhhHHHHHHHHhhhcccccccccc--ccccccchhhhcccccccccccccch-hhhhhhhccc
Confidence            01112223333333333333333333233333333332221  12245667777888888888888887 5899999999


Q ss_pred             ChhHHHHHHHHHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccchhhhhhHHH
Q 013991          352 GPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVVRVLTYTLSCHFW  425 (432)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~  425 (432)
                      ++++.+..+..+..+..+.+.+.....      ...+...+.+++.+...+...++..+.+|++.|+++.+..+
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (417)
T d1pv7a_         287 GGKNALLLAGTIMSVRIIGSSFATSAL------EVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCF  354 (417)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTCCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHH
T ss_pred             ccccchhhhHHHHHHhhhccccccccc------hhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHH
Confidence            999999999888888777766544322      34445556667777888999999999999999999988754

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=5.1e-15  Score=136.75  Aligned_cols=140  Identities=19%  Similarity=0.139  Sum_probs=118.3

Q ss_pred             hhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhccchhhH-Hhhhhhh
Q 013991           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEI  162 (432)
Q Consensus        84 ~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~  162 (432)
                      .+...+...++..++..+.+++.||+|+|+.+.++.++.+++.++..+.++.+.+++..++.|++.+...+. .+++.|.
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~  340 (417)
T d1pv7a_         261 FGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQ  340 (417)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777888888999999999999999999999999999999999999999999999999999999998887775 9999999


Q ss_pred             cccchhhhhhhhH-HHHHHHHHHHHHHHHhhhcccCCcCCCcccccccccCccchHHHHHHHHHHHHHH-HHHhhcccc
Q 013991          163 FREEHQALGLSTV-STAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPET  239 (432)
Q Consensus       163 ~~~~~r~~~~~~~-~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~  239 (432)
                      +|+++|++..+.. +....+|..++|.++|++.+                ..+++..+.+.+++.++.. +..+.++++
T Consensus       341 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~l~~~  403 (417)
T d1pv7a_         341 FEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE----------------SIGFQGAYLVLGLVALGFTLISVFTLSGP  403 (417)
T ss_dssp             SCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHH----------------HHCHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred             CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHCHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            9999999999985 56778999999999999998                4445555566666665544 444555543

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.42  E-value=3.6e-13  Score=125.94  Aligned_cols=150  Identities=11%  Similarity=0.048  Sum_probs=109.0

Q ss_pred             chhHHHHHHHHHHhhccccchhhhHHHH-HHHhcCCccccchhhhhhHHHHHHhHHHHHHHHhhhhhhhccCChHHHHHH
Q 013991           40 ITELFSIWIIVLCTALPISSLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (432)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~  118 (432)
                      .+.++......++............|.+ .+.++.+..+      .++..+...++..++.++.|++.||++||+.....
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  321 (447)
T d1pw4a_         248 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDK------SSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATG  321 (447)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred             CchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccch------hhhhhhcchhhhhhhhhhhhhhhhhcccccccccc
Confidence            3445555555555555555555566644 4567888888      99999999999999999999999999987654433


Q ss_pred             HHHHHHHHH---HHhh--hhhHHHHHHHHHHHhhhccchhhH-HhhhhhhcccchhhhhhhhHHHHHHH-HHHHHHHHHh
Q 013991          119 TASVVIFNT---LFGL--SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGI-GLIIGPALGG  191 (432)
Q Consensus       119 ~~~~~~~~~---~~~~--~~~~~~l~~~r~~~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~  191 (432)
                      .....+...   ....  ..+.+...+.-++.|++.+...+. ..+..|.+|+++|+++.|+.+....+ |.+++|.+.+
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g  401 (447)
T d1pw4a_         322 VFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVG  401 (447)
T ss_dssp             HHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333222222   2221  356777777778888876666665 88999999999999999999887776 5677999999


Q ss_pred             hhcc
Q 013991          192 FLAQ  195 (432)
Q Consensus       192 ~l~~  195 (432)
                      ++.+
T Consensus       402 ~~~~  405 (447)
T d1pw4a_         402 YTVD  405 (447)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9998