Citrus Sinensis ID: 013992

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430--
Protein Sequence
MEGAVHGGGTTDASAFRECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKVKGISAISPLIN
Secondary Structure (PSIPRED)
cccccccccccccccHHHccccccccccHHHHHHHHHHHHHcccccHHHHHccHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHcccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHcHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHcccccccccccHHHHHHHHHHHHHHHHHcccccHHcHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccccHEEEEEHEEHHHHHHHHHcccHEEHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHcccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHccccHHHHHHHHHHHHHHHHHHcccEEEEEcHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHcccccccccEcccccccEEEEcccEEEEc
Coil and Loop (DISEMBL)
megavhgggttdasAFRECfslswknpYVLRLAFSAGIGGLLFGYDTGVISGALLYIrddfksvdrktLLQESIVSMAVAGAIIGAAIGgwmndrfgrrtSILVADFLFFVGAVIMaaapnpgaliTGRVFVGLGVGmasmtsplyiseaspakIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLLLpesprwlyRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGIntvmyysptivqlsgfaSNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHettshspmvsavetshfsnltcpdyssaatadRWDCMkclkasspdcgfcashsnkvkgisaisplin
Flexible Loop (DISEMBL)
megavhgggttdasafRECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAIlrkvypaheveteirDLKESVDKeieeegssekinlvkllkTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFcashsnkvkgisaisplin
Low Complexity Region (SEG)
MEGAVHGGGTTDASAFRECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVagaiigaaiggWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDkeieeegssekiNLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKllvislsgvilslgvlsAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKVKGISAISPLIN
Disordered region (IsUnstruct)
*************SAFRECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEV***********************INLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASH***************
Disordered Region (DISOPRED)
***************************YVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRD********************VKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKVKGISAISPLIN
Disordered Region (DISEMBL)
**********TDASAFRECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESV*********SEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKVKGISAISPLIN
Disordered Region (DISPRO)
****************RECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKVKGISAISPLIN
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEGAVHGGGTTDASAFRECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPxxxxxxxxxxxxxxxxxxxxxEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKVKGISAISPLIN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	432	2.2.26 [Sep-21-2011]
Q9C757	580	Probable inositol transpo	yes	no	0.967	0.720	0.786	0.0
O23492	582	Inositol transporter 4 OS	no	no	0.946	0.702	0.627	1e-144
Q9ZQP6	580	Probable inositol transpo	no	no	0.905	0.674	0.604	1e-140
Q8VZR6	509	Inositol transporter 1 OS	no	no	0.791	0.671	0.582	1e-106
Q96QE2	648	Proton myo-inositol cotra	yes	no	0.881	0.587	0.405	1e-73
Q921A2	637	Proton myo-inositol cotra	yes	no	0.849	0.576	0.416	3e-70
Q3UHK1	637	Proton myo-inositol cotra	yes	no	0.849	0.576	0.416	4e-70
P46333	461	Probable metabolite trans	yes	no	0.733	0.687	0.421	4e-65
C0SPB2	457	Putative metabolite trans	no	no	0.745	0.704	0.411	9e-64
Q01440	547	Membrane transporter D1 O	N/A	no	0.724	0.572	0.386	4e-57

>sp|Q9C757|INT2_ARATH Probable inositol transporter 2 OS=Arabidopsis thaliana GN=INT2 PE=1 SV=1

 Score =  662 bits (1709), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/421 (78%), Positives = 373/421 (88%), Gaps = 3/421 (0%)

Query: 1   MEGAV-HGGGTTDASAFRECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRD 59
           MEG + HGG   D SAF+ECFSL+WKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRD
Sbjct: 1   MEGGIIHGGA--DESAFKECFSLTWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRD 58

Query: 60  DFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAA 119
           DFKSVDR T LQE IVSMAVAGAI+GAAIGGW ND+ GRR++IL+ADFLF +GA+IMAAA
Sbjct: 59  DFKSVDRNTWLQEMIVSMAVAGAIVGAAIGGWANDKLGRRSAILMADFLFLLGAIIMAAA 118

Query: 120 PNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINL 179
           PNP  L+ GRVFVGLGVGMASMT+PLYISEASPAKIRGALVSTNGFLIT GQFLSYLINL
Sbjct: 119 PNPSLLVVGRVFVGLGVGMASMTAPLYISEASPAKIRGALVSTNGFLITGGQFLSYLINL 178

Query: 180 AFTRAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVE 239
           AFT   GTWRWMLG+AGIPALLQF+LM  LPESPRWLYRKGREEEA+AILR++Y A +VE
Sbjct: 179 AFTDVTGTWRWMLGIAGIPALLQFVLMFTLPESPRWLYRKGREEEAKAILRRIYSAEDVE 238

Query: 240 TEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYS 299
            EIR LK+SV+ EI EEGSSEKIN++KL K +TVRRGLIAGVGLQVFQQFVGINTVMYYS
Sbjct: 239 QEIRALKDSVETEILEEGSSEKINMIKLCKAKTVRRGLIAGVGLQVFQQFVGINTVMYYS 298

Query: 300 PTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVL 359
           PTIVQL+GFASNRTALLLSLVT+GLNA GSI+SIYFIDR GRKKLL+ISL GVI+SLG+L
Sbjct: 299 PTIVQLAGFASNRTALLLSLVTAGLNAFGSIISIYFIDRIGRKKLLIISLFGVIISLGIL 358

Query: 360 SAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSN 419
           + VF+E  +H+P +S++ET  F+N++CPDY SA   + WDCM CLKASSP CG+C+S   
Sbjct: 359 TGVFYEAATHAPAISSLETQRFNNISCPDYKSAMNTNAWDCMTCLKASSPSCGYCSSPIG 418

Query: 420 K 420
           K
Sbjct: 419 K 419

Plasma membrane inositol-proton symporter. Specific for several inositol epimers, such as myoinositol and scylloinositol. D-chiroinositol, mucoinositol, alloinositol and pinitol are also transported with a lower activity. Not active with galactinol and phytate.
Arabidopsis thaliana (taxid: 3702)

>sp|O23492|INT4_ARATH Inositol transporter 4 OS=Arabidopsis thaliana GN=INT4 PE=1 SV=1

 Score =  513 bits (1320), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 264/421 (62%), Positives = 324/421 (76%), Gaps = 12/421 (2%)

Query: 5   VHGG-GTTDASAFRECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKS 63
           V GG    D + F EC+  +WK PY++RLA SAGIGGLLFGYDTGVISGALL+I++DF  
Sbjct: 2   VEGGIAKADKTEFTECWRTTWKTPYIMRLALSAGIGGLLFGYDTGVISGALLFIKEDFDE 61

Query: 64  VDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPG 123
           VD+KT LQ +IVSMAVAGAI+GAA+GGW+ND+FGRR SIL+AD LF +GA++MA AP P 
Sbjct: 62  VDKKTWLQSTIVSMAVAGAIVGAAVGGWINDKFGRRMSILIADVLFLIGAIVMAFAPAPW 121

Query: 124 ALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTR 183
            +I GR+FVG GVGMASMTSPLYISEASPA+IRGALVSTNG LIT GQF SYLINLAF  
Sbjct: 122 VIIVGRIFVGFGVGMASMTSPLYISEASPARIRGALVSTNGLLITGGQFFSYLINLAFVH 181

Query: 184 APGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIR 243
            PGTWRWMLGVAG+PA++QF+LML LPESPRWLYRK R  E++AIL ++YPA EVE E+ 
Sbjct: 182 TPGTWRWMLGVAGVPAIVQFVLMLSLPESPRWLYRKDRIAESRAILERIYPADEVEAEME 241

Query: 244 DLKESVDKEIEEE---GSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSP 300
            LK SV+ E  +E   G S    L        VRRGL AG+ +QV QQFVGINTVMYYSP
Sbjct: 242 ALKLSVEAEKADEAIIGDSFSAKLKGAFGNPVVRRGLAAGITVQVAQQFVGINTVMYYSP 301

Query: 301 TIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLS 360
           +IVQ +G+ASN+TA+ LSL+TSGLNA GSIVS+ F+DR GR+KL++IS+ G+I  L +L+
Sbjct: 302 SIVQFAGYASNKTAMALSLITSGLNALGSIVSMMFVDRYGRRKLMIISMFGIIACLIILA 361

Query: 361 AVFHETTSHSPMVSAVETSHFS-NLTCPDYSSAATAD----RWDCMKCLKASSPDCGFCA 415
            VF +   H+P + A E+  F+ N TC  Y+  A  +    RW+CMKCL++   +CGFCA
Sbjct: 362 TVFSQAAIHAPKIDAFESRTFAPNATCSAYAPLAAENAPPSRWNCMKCLRS---ECGFCA 418

Query: 416 S 416
           S
Sbjct: 419 S 419

Plasma membrane inositol-proton symporter. Mediates high-affinity myoinositol-proton symport across the plasma membrane. Active with myoinositol, scylloinositol and D-chiroinositol. Low activity with mucoinositol and alloinositol.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZQP6|INT3_ARATH Probable inositol transporter 3 OS=Arabidopsis thaliana GN=INT3 PE=2 SV=1

 Score =  497 bits (1279), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 243/402 (60%), Positives = 307/402 (76%), Gaps = 11/402 (2%)

Query: 27  PYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGA 86
           PY++RLA SAGIGGLLFGY+TGVI+GALLYI+++F  VD KT LQE IVSM VAGAI+GA
Sbjct: 24  PYIMRLALSAGIGGLLFGYNTGVIAGALLYIKEEFGEVDNKTWLQEIIVSMTVAGAIVGA 83

Query: 87  AIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLY 146
           AIGGW ND+FGRR S+L+AD LF +GA++M  A  P  +I GR+ VG GVGMASMTSPLY
Sbjct: 84  AIGGWYNDKFGRRMSVLIADVLFLLGALVMVIAHAPWVIILGRLLVGFGVGMASMTSPLY 143

Query: 147 ISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILM 206
           ISE SPA+IRGALVSTNG LIT GQFLSYLINLAF   PGTWRWMLGV+ IPA++QF LM
Sbjct: 144 ISEMSPARIRGALVSTNGLLITGGQFLSYLINLAFVHTPGTWRWMLGVSAIPAIIQFCLM 203

Query: 207 LLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEE---GSSEKIN 263
           L LPESPRWLYR  R+ E++ IL ++YPA  VE EI  LKESV  E  +E   G +    
Sbjct: 204 LTLPESPRWLYRNDRKAESRDILERIYPAEMVEAEIAALKESVRAETADEDIIGHTFSDK 263

Query: 264 LVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSG 323
           L   L    VR GL AG+ +QV QQFVGINTVMYYSPTI+Q +G+ASN+TA+ L+L+TSG
Sbjct: 264 LRGALSNPVVRHGLAAGITVQVAQQFVGINTVMYYSPTILQFAGYASNKTAMALALITSG 323

Query: 324 LNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFS- 382
           LNA GS+VS+ F+DR GR+KL++IS+ G+I  L +L+AVF+E ++H+P +   ++ +F+ 
Sbjct: 324 LNAVGSVVSMMFVDRYGRRKLMIISMFGIITCLVILAAVFNEASNHAPKIDKRDSRNFAK 383

Query: 383 NLTCPDY----SSAATADRWDCMKCLKASSPDCGFCASHSNK 420
           N TCP +    +S +    W+CMKCL+    DCGFC++ + +
Sbjct: 384 NATCPAFAPFTASRSPPSNWNCMKCLQY---DCGFCSNGAQE 422

Plasma membrane inositol-proton symporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VZR6|INT1_ARATH Inositol transporter 1 OS=Arabidopsis thaliana GN=INT1 PE=1 SV=1

 Score =  384 bits (986), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 201/345 (58%), Positives = 264/345 (76%), Gaps = 3/345 (0%)

Query: 26  NPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIG 85
           N Y+L L  +AGIGGLLFGYDTGVISGALLYI+DDF+ V + + LQE+IVSMA+ GA+IG
Sbjct: 28  NSYILGLTVTAGIGGLLFGYDTGVISGALLYIKDDFEVVKQSSFLQETIVSMALVGAMIG 87

Query: 86  AAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPL 145
           AA GGW+ND +GR+ + L AD +F  GA++MAAAP+P  LI+GR+ VGLGVG+AS+T+P+
Sbjct: 88  AAAGGWINDYYGRKKATLFADVVFAAGAIVMAAAPDPYVLISGRLLVGLGVGVASVTAPV 147

Query: 146 YISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFIL 205
           YI+EASP+++RG LVSTN  +IT GQFLSYL+N AFT+ PGTWRWMLGV+G+PA++QFIL
Sbjct: 148 YIAEASPSEVRGGLVSTNVLMITGGQFLSYLVNSAFTQVPGTWRWMLGVSGVPAVIQFIL 207

Query: 206 MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLV 265
           ML +PESPRWL+ K R+ EA  +L + Y    +E EI  L  +   E EE+     +  +
Sbjct: 208 MLFMPESPRWLFMKNRKAEAIQVLARTYDISRLEDEIDHLSAA---EEEEKQRKRTVGYL 264

Query: 266 KLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLN 325
            + +++ +R   +AG GLQ FQQF GINTVMYYSPTIVQ++GF SN+ AL LSL+ + +N
Sbjct: 265 DVFRSKELRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFHSNQLALFLSLIVAAMN 324

Query: 326 AAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHS 370
           AAG++V IYFID  GRKKL + SL GVI+SL +LS  F + +  S
Sbjct: 325 AAGTVVGIYFIDHCGRKKLALSSLFGVIISLLILSVSFFKQSETS 369

Vacuolar inositol-proton symporter involved in the release of myo-inositol from vacuoles. Not involved in glucose or fructose transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q96QE2|MYCT_HUMAN Proton myo-inositol cotransporter OS=Homo sapiens GN=SLC2A13 PE=1 SV=3

 Score =  277 bits (708), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 165/407 (40%), Positives = 246/407 (60%), Gaps = 26/407 (6%)

Query: 15  AFRECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESI 74
           A R  F       +V  +A  + +GG LFGYDTGV+SGA+L ++   + +    L QE +
Sbjct: 67  AARRQFQQDETPAFVYVVAVFSALGGFLFGYDTGVVSGAMLLLK---RQLSLDALWQELL 123

Query: 75  VSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGL 134
           VS  V  A + A  GG +N  FGRR +IL+A  LF  G+ ++AAA N   L+ GR+ VGL
Sbjct: 124 VSSTVGAAAVSALAGGALNGVFGRRAAILLASALFTAGSAVLAAANNKETLLAGRLVVGL 183

Query: 135 GVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTR-APGTWRWMLG 193
           G+G+ASMT P+YI+E SP  +RG LV+ N   IT GQF + +++ AF+      WR+MLG
Sbjct: 184 GIGIASMTVPVYIAEVSPPNLRGRLVTINTLFITGGQFFASVVDGAFSYLQKDGWRYMLG 243

Query: 194 VAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEI 253
           +A +PA++QF   L LPESPRWL +KG+ ++A+ IL ++     ++ E   +K ++++E 
Sbjct: 244 LAAVPAVIQFFGFLFLPESPRWLIQKGQTQKARRILSQMRGNQTIDEEYDSIKNNIEEEE 303

Query: 254 EEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRT 313
           +E GS+  + + ++L     RR LI G GLQ+FQQ  GINT+MYYS TI+Q+SG   +R 
Sbjct: 304 KEVGSAGPV-ICRMLSYPPTRRALIVGCGLQMFQQLSGINTIMYYSATILQMSGVEDDRL 362

Query: 314 ALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSG-----VILSLG-VLSAVFHETT 367
           A+ L+ VT+  N   ++V ++ +++ GR+KL   SL+G     +IL+LG VLSA      
Sbjct: 363 AIWLASVTAFTNFIFTLVGVWLVEKVGRRKLTFGSLAGTTVALIILALGFVLSAQVSPRI 422

Query: 368 SHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFC 414
           +  P+  + +     N TC  YS         C +C+    PDCGFC
Sbjct: 423 TFKPIAPSGQ-----NATCTRYSY--------CNECML--DPDCGFC 454

H(+)-myo-inositol cotransporter. Can also transport related stereoisomers.

Homo sapiens (taxid: 9606)

>sp|Q921A2|MYCT_RAT Proton myo-inositol cotransporter OS=Rattus norvegicus GN=Slc2a13 PE=2 SV=2

 Score =  266 bits (679), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 160/384 (41%), Positives = 242/384 (63%), Gaps = 17/384 (4%)

Query: 33  AFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWM 92
           AFSA +GG LFGYDTGV+SGA+L +R   + +    + QE +VS AV  A + A  GG +
Sbjct: 75  AFSA-LGGFLFGYDTGVVSGAMLLLR---RQMRLGAMWQELLVSGAVGAAAVAALAGGAL 130

Query: 93  NDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASP 152
           N   GRR++IL+A  L  VG+ ++AAA N   L+ GR+ VGLG+G+ASMT P+YI+E SP
Sbjct: 131 NGALGRRSAILLASALCTVGSAVLAAAANKETLLAGRLVVGLGIGIASMTVPVYIAEVSP 190

Query: 153 AKIRGALVSTNGFLITSGQFLSYLINLAFTR-APGTWRWMLGVAGIPALLQFILMLLLPE 211
             +RG LV+ N   IT GQF + +++ AF+      WR+MLG+A IPA++QF+  L LPE
Sbjct: 191 PNLRGRLVTINTLFITGGQFFASVVDGAFSYLQKDGWRYMLGLAAIPAVIQFLGFLFLPE 250

Query: 212 SPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTR 271
           SPRWL +KG+ ++A+ IL ++     ++ E   ++ S+++E +E  ++  I + ++L   
Sbjct: 251 SPRWLIQKGQTQKARRILSQMRGNQTIDEEYDSIRNSIEEEEKEASAAGPI-ICRMLSYP 309

Query: 272 TVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIV 331
             RR L  G GLQ+FQQ  GINT+MYYS TI+Q+SG   +R A+ L+ +T+  N   ++V
Sbjct: 310 PTRRALAVGCGLQMFQQLSGINTIMYYSATILQMSGVEDDRLAIWLASITAFTNFIFTLV 369

Query: 332 SIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETS-HFSNLTCPDYS 390
            ++ +++ GR+KL   SL+G  ++L +L+  F  +   SP V+   T+    N TC +YS
Sbjct: 370 GVWLVEKVGRRKLTFGSLAGTTVALTILALGFLLSAQVSPRVTFRPTAPSGQNATCTEYS 429

Query: 391 SAATADRWDCMKCLKASSPDCGFC 414
                    C +C+    PDCGFC
Sbjct: 430 Y--------CNECML--DPDCGFC 443

H(+)-myo-inositol cotransporter. Can also transport related stereoisomers.

Rattus norvegicus (taxid: 10116)

>sp|Q3UHK1|MYCT_MOUSE Proton myo-inositol cotransporter OS=Mus musculus GN=Slc2a13 PE=2 SV=2

 Score =  265 bits (678), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 160/384 (41%), Positives = 242/384 (63%), Gaps = 17/384 (4%)

Query: 33  AFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWM 92
           AFSA +GG LFGYDTGV+SGA+L +R   + +    + QE +VS AV  A + A  GG +
Sbjct: 75  AFSA-LGGFLFGYDTGVVSGAMLLLR---RQMRLGAMWQELLVSGAVGAAAVAALAGGAL 130

Query: 93  NDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASP 152
           N   GRR++IL+A  L  VG+ ++AAA N   L+ GR+ VGLG+G+ASMT P+YI+E SP
Sbjct: 131 NGALGRRSAILLASALCTVGSAVLAAAANKETLLAGRLVVGLGIGIASMTVPVYIAEVSP 190

Query: 153 AKIRGALVSTNGFLITSGQFLSYLINLAFTR-APGTWRWMLGVAGIPALLQFILMLLLPE 211
             +RG LV+ N   IT GQF + +++ AF+      WR+MLG+A IPA++QF+  L LPE
Sbjct: 191 PNLRGRLVTINTLFITGGQFFASVVDGAFSYLQKDGWRYMLGLAAIPAVIQFLGFLFLPE 250

Query: 212 SPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTR 271
           SPRWL +KG+ ++A+ IL ++     ++ E   ++ S+++E +E  ++  I + ++L   
Sbjct: 251 SPRWLIQKGQTQKARRILSQMRGNQTIDEEYDSIRNSIEEEEKEATAAGPI-ICRMLSYP 309

Query: 272 TVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIV 331
             RR L+ G GLQ+FQQ  GINT+MYYS TI+Q+SG   +R A+ L+ +T+  N   ++V
Sbjct: 310 PTRRALVVGCGLQMFQQLSGINTIMYYSATILQMSGVEDDRLAIWLASITAFTNFIFTLV 369

Query: 332 SIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETS-HFSNLTCPDYS 390
            ++ +++ GR+KL   SL+G  ++L +L+  F  +   SP V+   T+    N TC  YS
Sbjct: 370 GVWLVEKVGRRKLTFGSLAGTTVALIILALGFLLSAQVSPRVTFRPTTPSDQNTTCTGYS 429

Query: 391 SAATADRWDCMKCLKASSPDCGFC 414
                    C +C+    PDCGFC
Sbjct: 430 Y--------CNECML--DPDCGFC 443

H(+)-myo-inositol cotransporter. Can also transport related stereoisomers.

Mus musculus (taxid: 10090)

>sp|P46333|CSBC_BACSU Probable metabolite transport protein CsbC OS=Bacillus subtilis (strain 168) GN=csbC PE=1 SV=3

 Score =  249 bits (635), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 139/330 (42%), Positives = 207/330 (62%), Gaps = 13/330 (3%)

Query: 34  FSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMN 93
           F   +GGLL+GYDTGVISGALL+I +D   +   TL +  +VSM + GAI G+A+ G  +
Sbjct: 12  FFGALGGLLYGYDTGVISGALLFINND---IPLTTLTEGLVVSMLLLGAIFGSALSGTCS 68

Query: 94  DRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPA 153
           DR+GRR  + V   +F +GA+  A +   G LI  RV +GL VG ++   P+Y+SE +P 
Sbjct: 69  DRWGRRKVVFVLSIIFIIGALACAFSQTIGMLIASRVILGLAVGGSTALVPVYLSEMAPT 128

Query: 154 KIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLLLPESP 213
           KIRG L + N  +I +G  L+Y++N  FT     WRWM+G+A +PA+L  I +  +PESP
Sbjct: 129 KIRGTLGTMNNLMIVTGILLAYIVNYLFTPFEA-WRWMVGLAAVPAVLLLIGIAFMPESP 187

Query: 214 RWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTV 273
           RWL ++G EEEA+ I+   +   ++E E+ ++K+    E E++ ++     + +LK + +
Sbjct: 188 RWLVKRGSEEEARRIMNITHDPKDIEMELAEMKQG---EAEKKETT-----LGVLKAKWI 239

Query: 274 RRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSI 333
           R  L+ GVGL +FQQ VGINTV+YY+PTI   +G  ++ +A L ++    LN    I ++
Sbjct: 240 RPMLLIGVGLAIFQQAVGINTVIYYAPTIFTKAGLGTSASA-LGTMGIGILNVIMCITAM 298

Query: 334 YFIDRTGRKKLLVISLSGVILSLGVLSAVF 363
             IDR GRKKLL+    G+ LSL  LS V 
Sbjct: 299 ILIDRVGRKKLLIWGSVGITLSLAALSGVL 328

Could serve either a nutritional or an osmotic protection function.

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|C0SPB2|YWTG_BACSU Putative metabolite transport protein YwtG OS=Bacillus subtilis (strain 168) GN=ywtG PE=3 SV=1

 Score =  244 bits (623), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 139/338 (41%), Positives = 207/338 (61%), Gaps = 16/338 (4%)

Query: 32  LAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGW 91
           L F   +GG L+GYDTGVISGA+L+++   K +      +  +VS  + GAI+G+   G 
Sbjct: 9   LYFFGALGGALYGYDTGVISGAILFMK---KELGLNAFTEGLVVSSLLVGAILGSGAAGK 65

Query: 92  MNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEAS 151
           + DRFGR+ +I+ A  LF +G + +A APN G ++  R+ +GL VG ++   PLY+SE +
Sbjct: 66  LTDRFGRKKAIMAAALLFCIGGLGVALAPNTGVMVLFRIILGLAVGTSTTIVPLYLSELA 125

Query: 152 PAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLLLPE 211
           P   RGAL S N  +IT G  LSY++N  F  A   WRWMLG+A +P+LL  I +L +PE
Sbjct: 126 PKHKRGALSSLNQLMITVGILLSYIVNYIFADAE-AWRWMLGLAAVPSLLLLIGILFMPE 184

Query: 212 SPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTR 271
           SPRWL+  G E +A+ IL K+    +++ EI D+KE+   E ++EG       +K L   
Sbjct: 185 SPRWLFTNGEESKAKKILEKLRGTKDIDQEIHDIKEA---EKQDEGG------LKELFDP 235

Query: 272 TVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIV 331
            VR  LIAG+GL   QQF+G NT++YY+P      GF  N  ++L ++    +N   ++V
Sbjct: 236 WVRPALIAGLGLAFLQQFIGTNTIIYYAPKTFTNVGFG-NSASILGTVGIGTVNVLMTLV 294

Query: 332 SIYFIDRTGRKKLLVISLSGVILSLGVLSAV--FHETT 367
           +I  ID+ GRK LL+   +G+++SL VL+ V  F + T
Sbjct: 295 AIKIIDKIGRKPLLLFGNAGMVISLIVLALVNLFFDNT 332

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|Q01440|GTR1_LEIDO Membrane transporter D1 OS=Leishmania donovani PE=3 SV=1

 Score =  222 bits (566), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 128/331 (38%), Positives = 201/331 (60%), Gaps = 18/331 (5%)

Query: 36  AGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDR 95
           A +GG LFGYDTGVI+ AL  ++D F      +     IV++A+AGA +GA I G+++  
Sbjct: 9   AALGGFLFGYDTGVINAALFQMKDHF-GFSEHSWQYALIVAIAIAGAFVGAFISGFISAA 67

Query: 96  FGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKI 155
           FGRR  I VAD LF +G+V+M AAPN   ++  RV VGL +G++S T P+Y++E +  K 
Sbjct: 68  FGRRPCIAVADALFVIGSVLMGAAPNVEVVLVSRVIVGLAIGISSATIPVYLAEVTSPKH 127

Query: 156 RGALVSTNGFLITSGQFLS---YLINLAFTRAPGTWRWMLGVAGIPALLQ-FILMLLLPE 211
           RGA +  N   +T GQF++     I + FT     WR  +G+  +PA++Q F L+  LPE
Sbjct: 128 RGATIVLNNLFLTGGQFVAAGFTAIMVVFTSKNIGWRVAIGIGALPAVVQAFCLLFFLPE 187

Query: 212 SPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTR 271
           SPRWL  KG  + A+A+      A + E ++ + +E       +E  S +I+  + L  R
Sbjct: 188 SPRWLLSKGHADRAKAV------ADKFEVDLCEFQEG------DELPSVRIDY-RPLMAR 234

Query: 272 TVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIV 331
            +R  ++   GLQ+ QQF GINT+MYYS  I+  +GF      ++LS+  + +NA  + V
Sbjct: 235 DMRFRVVLSSGLQIIQQFSGINTIMYYSSVILYDAGFRDAIMPVVLSIPLAFMNALFTAV 294

Query: 332 SIYFIDRTGRKKLLVISLSGVILSLGVLSAV 362
           +I+ +DR GR+++L+IS+ G ++ L V++ +
Sbjct: 295 AIFTVDRFGRRRMLLISVFGCLVLLVVIAII 325

Leishmania donovani (taxid: 5661)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	432
225443922	577	PREDICTED: probable inositol transporter	0.967	0.724	0.845	0.0
356510859	580	PREDICTED: probable inositol transporter	0.962	0.717	0.769	0.0
297851452	580	ATINT2 [Arabidopsis lyrata subsp. lyrata	0.965	0.718	0.799	0.0
449439573	587	PREDICTED: probable inositol transporter	0.972	0.715	0.804	0.0
15220697	580	putative inositol transporter 2 [Arabido	0.967	0.720	0.786	0.0
357450525	580	Carbohydrate transporter/sugar porter [M	0.962	0.717	0.755	0.0
356525098	580	PREDICTED: probable inositol transporter	0.962	0.717	0.771	0.0
356530545	581	PREDICTED: probable inositol transporter	0.962	0.716	0.753	0.0
356556509	573	PREDICTED: probable inositol transporter	0.981	0.739	0.731	0.0
326518016	580	predicted protein [Hordeum vulgare subsp	0.956	0.712	0.785	1e-177

>gi|225443922|ref|XP_002278732.1| PREDICTED: probable inositol transporter 2 isoform 1 [Vitis vinifera] gi|297740750|emb|CBI30932.3| unnamed protein product [Vitis vinifera] gi|310877898|gb|ADP37180.1| putative inositol transporter [Vitis vinifera]

 Score =  693 bits (1789), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/421 (84%), Positives = 391/421 (92%), Gaps = 3/421 (0%)

Query: 1   MEGAVHGGGTTDASAFRECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDD 60
           MEG +H     + SAFR+CFSL+WKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYI++D
Sbjct: 1   MEGGIH---PVETSAFRDCFSLAWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIKED 57

Query: 61  FKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAP 120
           F SVD++T+LQESIVSMAVAGAIIGAAIGGWMNDR+GR+T+IL+ADFLFF+GAVIMA+A 
Sbjct: 58  FDSVDKQTVLQESIVSMAVAGAIIGAAIGGWMNDRYGRKTAILIADFLFFIGAVIMASAQ 117

Query: 121 NPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLA 180
           NP  LI GRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLIT GQFL+YLINLA
Sbjct: 118 NPATLIVGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITGGQFLAYLINLA 177

Query: 181 FTRAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVET 240
           FT+APGTWRWMLGVAG+PAL+QFILM+LLPESPRWL+RKGREEEA+AILRK+YPAHEVET
Sbjct: 178 FTKAPGTWRWMLGVAGVPALVQFILMILLPESPRWLFRKGREEEAKAILRKIYPAHEVET 237

Query: 241 EIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSP 300
           EI+DLKESV+KEIEEEGSSEKIN +KL +T+TVRRGLIAGVGLQVFQQFVGINTVMYYSP
Sbjct: 238 EIQDLKESVEKEIEEEGSSEKINFIKLWRTKTVRRGLIAGVGLQVFQQFVGINTVMYYSP 297

Query: 301 TIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLS 360
           TIVQ +GFASNRTALLLSLVT+GLNA GSIVSIYFIDRTGRKKLLVISL GVI+SLG+LS
Sbjct: 298 TIVQFAGFASNRTALLLSLVTAGLNALGSIVSIYFIDRTGRKKLLVISLIGVIISLGLLS 357

Query: 361 AVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNK 420
           AVFHETTSHSP VS + TS F+N TCPDYSSA     WDCMKCLKASSPDCGFCAS  NK
Sbjct: 358 AVFHETTSHSPDVSPLATSRFANYTCPDYSSAKEDATWDCMKCLKASSPDCGFCASAINK 417

Query: 421 V 421
           +
Sbjct: 418 L 418

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510859|ref|XP_003524151.1| PREDICTED: probable inositol transporter 2-like [Glycine max]

 Score =  672 bits (1735), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/421 (76%), Positives = 373/421 (88%), Gaps = 5/421 (1%)

Query: 1   MEGAVHGGGTTDASAFRECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDD 60
           MEG   GG   DASAFREC SLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGA+LYIRDD
Sbjct: 1   MEG---GGVEVDASAFRECLSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGAILYIRDD 57

Query: 61  FKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAP 120
           FK+VDRKT LQE+IVSMA+AGAI+GAA+GGW+NDRFGRR +IL+AD LFF+G+ +MAAA 
Sbjct: 58  FKAVDRKTWLQEAIVSMALAGAIVGAAVGGWINDRFGRRKAILLADTLFFIGSAVMAAAT 117

Query: 121 NPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLA 180
           NP  LI GRVFVGLGVGMASM SPLYISEASP ++RGALVS NGFLIT GQFLSYLINLA
Sbjct: 118 NPSILIVGRVFVGLGVGMASMASPLYISEASPTRVRGALVSLNGFLITGGQFLSYLINLA 177

Query: 181 FTRAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVET 240
           FT+APGTWRWMLG A +PAL+Q +LM++LPESPRWL+RKGREEE + ILRK+YP  EVE 
Sbjct: 178 FTKAPGTWRWMLGAAVVPALIQIVLMMMLPESPRWLFRKGREEEGKEILRKIYPPQEVEA 237

Query: 241 EIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSP 300
           EI  L+ESV+ EI+E  +++ I++VK+LKT+TVRRGL AG+GLQ+FQQFVGINTVMYYSP
Sbjct: 238 EINTLRESVEIEIKEAEATDNISIVKMLKTKTVRRGLYAGMGLQIFQQFVGINTVMYYSP 297

Query: 301 TIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLS 360
           TIVQL+GFASNRTALLLSLVTSGLNA GSI+SIYFIDRTGRKKL++ SL GV+ SL VL+
Sbjct: 298 TIVQLAGFASNRTALLLSLVTSGLNAFGSILSIYFIDRTGRKKLVLFSLCGVVFSLVVLT 357

Query: 361 AVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNK 420
            VFH++T+HSPMVSA+ETSHF+N TCPDY SAA    WDCMKCLKA SP+CGFCAS +NK
Sbjct: 358 VVFHQSTTHSPMVSALETSHFNN-TCPDYHSAANPGGWDCMKCLKA-SPNCGFCASGANK 415

Query: 421 V 421
           +
Sbjct: 416 L 416

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297851452|ref|XP_002893607.1| ATINT2 [Arabidopsis lyrata subsp. lyrata] gi|297339449|gb|EFH69866.1| ATINT2 [Arabidopsis lyrata subsp. lyrata]

 Score =  671 bits (1731), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/419 (79%), Positives = 375/419 (89%), Gaps = 2/419 (0%)

Query: 2   EGAVHGGGTTDASAFRECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDF 61
           EG VHGG   D SAF+ECFSL+WKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDF
Sbjct: 3   EGIVHGGA--DESAFKECFSLTWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDF 60

Query: 62  KSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPN 121
           KSVDR T LQE IVSMAVAGAI+GAAIGGW ND+FGRR++IL+ADFLF +GA+IMAAAP 
Sbjct: 61  KSVDRNTWLQEMIVSMAVAGAIVGAAIGGWANDKFGRRSAILMADFLFLLGAIIMAAAPY 120

Query: 122 PGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAF 181
           P  L+ GRVFVGLGVGMASMT+PLYISEASPAKIRGALVSTNGFLIT GQFLSYLINLAF
Sbjct: 121 PSLLVVGRVFVGLGVGMASMTAPLYISEASPAKIRGALVSTNGFLITGGQFLSYLINLAF 180

Query: 182 TRAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETE 241
           T   GTWRWMLG+AGIPALLQFILM  LPESPRWLYRKGREEEA+AILR++Y A +VE E
Sbjct: 181 TDVTGTWRWMLGIAGIPALLQFILMFTLPESPRWLYRKGREEEAKAILRRIYSAEDVEQE 240

Query: 242 IRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPT 301
           IR LK+SV+ EI EEGSSEKIN++KL K +TVRRGLIAGVGLQVFQQFVGINTVMYYSPT
Sbjct: 241 IRALKDSVELEILEEGSSEKINMIKLCKAKTVRRGLIAGVGLQVFQQFVGINTVMYYSPT 300

Query: 302 IVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSA 361
           IVQL+GFASNRTALLLSLVT+GLNA GSI+SIYFIDRTGRKKLL+ISL GVI+SLG+L+ 
Sbjct: 301 IVQLAGFASNRTALLLSLVTAGLNAFGSIISIYFIDRTGRKKLLIISLFGVIISLGILTG 360

Query: 362 VFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNK 420
           VF+E T+H+P +S++ET  F+N+TCPDY SA   + WDCM CLKASSP CG+C+S + K
Sbjct: 361 VFYEATTHAPAISSLETQRFNNITCPDYKSAMNTNAWDCMTCLKASSPSCGYCSSPTGK 419

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439573|ref|XP_004137560.1| PREDICTED: probable inositol transporter 2-like [Cucumis sativus] gi|449520855|ref|XP_004167448.1| PREDICTED: probable inositol transporter 2-like [Cucumis sativus]

 Score =  666 bits (1718), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/424 (80%), Positives = 375/424 (88%), Gaps = 4/424 (0%)

Query: 1   MEGAVHGGGTTDAS---AFRECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYI 57
           MEG +HGG +        FR+CFSL+WKNPYVLRLAFSAGIGG LFGYDTGVISGALLYI
Sbjct: 1   MEGGIHGGSSNSDDGSSTFRDCFSLAWKNPYVLRLAFSAGIGGFLFGYDTGVISGALLYI 60

Query: 58  RDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMA 117
           RDDFKSVD  T+LQE+IVSMA+AGAIIGAAIGGWMNDRFGRRT IL+ADFLFF+GAV+MA
Sbjct: 61  RDDFKSVDSSTVLQETIVSMAIAGAIIGAAIGGWMNDRFGRRTVILIADFLFFIGAVVMA 120

Query: 118 AAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLI 177
           A+P P  LI GRVFVGLGVGMASMTSPLYISEASP KIRGALVSTNGFLIT GQFLSYLI
Sbjct: 121 ASPGPSLLIVGRVFVGLGVGMASMTSPLYISEASPPKIRGALVSTNGFLITGGQFLSYLI 180

Query: 178 NLAFTRAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHE 237
           NLAFT+APGTWRWMLG+AG+PALLQFILM LLPESPRWLYRKGR EEA+ ILRK+Y  +E
Sbjct: 181 NLAFTKAPGTWRWMLGIAGLPALLQFILMFLLPESPRWLYRKGRSEEAERILRKIYSENE 240

Query: 238 VETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMY 297
           VE EIRDLKESV+ EI+E+  SEKI+L+KLLKT+TVRRGL AGVGLQ+FQQFVGINTVMY
Sbjct: 241 VEGEIRDLKESVEAEIKEKEISEKISLIKLLKTKTVRRGLYAGVGLQIFQQFVGINTVMY 300

Query: 298 YSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLG 357
           YSP+IVQL+GFASN TALLLSLVT+GLNA GSIVSIYFIDRTGRKKLLVISL GVI+SLG
Sbjct: 301 YSPSIVQLAGFASNETALLLSLVTAGLNALGSIVSIYFIDRTGRKKLLVISLFGVIISLG 360

Query: 358 VLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASH 417
           +L+AVFHETTSHSP+V    T      TCPDYS A  +  WDCMKCLKASSPDCGFCAS 
Sbjct: 361 ILTAVFHETTSHSPLVRITNTP-LKAYTCPDYSFADNSASWDCMKCLKASSPDCGFCASG 419

Query: 418 SNKV 421
           +NK+
Sbjct: 420 TNKL 423

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15220697|ref|NP_174313.1| putative inositol transporter 2 [Arabidopsis thaliana] gi|75333454|sp|Q9C757.1|INT2_ARATH RecName: Full=Probable inositol transporter 2 gi|12320850|gb|AAG50560.1|AC073506_2 hypothetical protein [Arabidopsis thaliana] gi|18377759|gb|AAL67029.1| unknown protein [Arabidopsis thaliana] gi|21689841|gb|AAM67564.1| unknown protein [Arabidopsis thaliana] gi|84617969|emb|CAJ00304.1| inositol transporter 2 [Arabidopsis thaliana] gi|332193073|gb|AEE31194.1| putative inositol transporter 2 [Arabidopsis thaliana]

 Score =  662 bits (1709), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/421 (78%), Positives = 373/421 (88%), Gaps = 3/421 (0%)

Query: 1   MEGAV-HGGGTTDASAFRECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRD 59
           MEG + HGG   D SAF+ECFSL+WKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRD
Sbjct: 1   MEGGIIHGGA--DESAFKECFSLTWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRD 58

Query: 60  DFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAA 119
           DFKSVDR T LQE IVSMAVAGAI+GAAIGGW ND+ GRR++IL+ADFLF +GA+IMAAA
Sbjct: 59  DFKSVDRNTWLQEMIVSMAVAGAIVGAAIGGWANDKLGRRSAILMADFLFLLGAIIMAAA 118

Query: 120 PNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINL 179
           PNP  L+ GRVFVGLGVGMASMT+PLYISEASPAKIRGALVSTNGFLIT GQFLSYLINL
Sbjct: 119 PNPSLLVVGRVFVGLGVGMASMTAPLYISEASPAKIRGALVSTNGFLITGGQFLSYLINL 178

Query: 180 AFTRAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVE 239
           AFT   GTWRWMLG+AGIPALLQF+LM  LPESPRWLYRKGREEEA+AILR++Y A +VE
Sbjct: 179 AFTDVTGTWRWMLGIAGIPALLQFVLMFTLPESPRWLYRKGREEEAKAILRRIYSAEDVE 238

Query: 240 TEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYS 299
            EIR LK+SV+ EI EEGSSEKIN++KL K +TVRRGLIAGVGLQVFQQFVGINTVMYYS
Sbjct: 239 QEIRALKDSVETEILEEGSSEKINMIKLCKAKTVRRGLIAGVGLQVFQQFVGINTVMYYS 298

Query: 300 PTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVL 359
           PTIVQL+GFASNRTALLLSLVT+GLNA GSI+SIYFIDR GRKKLL+ISL GVI+SLG+L
Sbjct: 299 PTIVQLAGFASNRTALLLSLVTAGLNAFGSIISIYFIDRIGRKKLLIISLFGVIISLGIL 358

Query: 360 SAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSN 419
           + VF+E  +H+P +S++ET  F+N++CPDY SA   + WDCM CLKASSP CG+C+S   
Sbjct: 359 TGVFYEAATHAPAISSLETQRFNNISCPDYKSAMNTNAWDCMTCLKASSPSCGYCSSPIG 418

Query: 420 K 420
           K
Sbjct: 419 K 419

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357450525|ref|XP_003595539.1| Carbohydrate transporter/sugar porter [Medicago truncatula] gi|355484587|gb|AES65790.1| Carbohydrate transporter/sugar porter [Medicago truncatula]

 Score =  662 bits (1709), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/421 (75%), Positives = 370/421 (87%), Gaps = 5/421 (1%)

Query: 1   MEGAVHGGGTTDASAFRECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDD 60
           MEG V      D SAFREC SLSWKNPYVLRLAFSAGIGG LFGYDTGVISGALLYIRDD
Sbjct: 1   MEGGVP---EADVSAFRECLSLSWKNPYVLRLAFSAGIGGFLFGYDTGVISGALLYIRDD 57

Query: 61  FKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAP 120
           FK+VDR+T LQE+IVS A+AGAIIGA++GGW+NDRFGR+ +I++AD LFF+G+VIMAAA 
Sbjct: 58  FKAVDRQTWLQEAIVSTALAGAIIGASVGGWINDRFGRKKAIILADALFFIGSVIMAAAI 117

Query: 121 NPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLA 180
           NP  LI GRVFVGLGVGMASM SPLYISEASP ++RGALVS NGFLIT GQFLSY+INLA
Sbjct: 118 NPAILIVGRVFVGLGVGMASMASPLYISEASPTRVRGALVSLNGFLITGGQFLSYVINLA 177

Query: 181 FTRAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVET 240
           FT APGTWRWMLGVA +PAL Q +LML+LPESPRWL+RKG+EEEA+ ILRK+YP  +VE 
Sbjct: 178 FTNAPGTWRWMLGVAAVPALTQIVLMLMLPESPRWLFRKGKEEEAKEILRKIYPPQDVED 237

Query: 241 EIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSP 300
           EI  LKESV+ E +++ SS K++++KLLKT+TVRRGL AGVGLQ+FQQFVGINTVMYYSP
Sbjct: 238 EIIALKESVEMESKDDSSSNKVSIIKLLKTKTVRRGLYAGVGLQIFQQFVGINTVMYYSP 297

Query: 301 TIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLS 360
           TIVQL+GFASN+TALLLSLVT+G+NA GSI+SIYFID+TGRKKLL+ SLSGVI+SL VL+
Sbjct: 298 TIVQLAGFASNKTALLLSLVTAGINAFGSILSIYFIDKTGRKKLLLFSLSGVIVSLVVLT 357

Query: 361 AVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNK 420
            VFH+TT+HSPMVS +E+S F+N TCPDY +A  A +WDCMKCLKA SP+CGFCAS  NK
Sbjct: 358 VVFHQTTTHSPMVSEIESSKFNN-TCPDYRTALDAAQWDCMKCLKA-SPECGFCASAGNK 415

Query: 421 V 421
           +
Sbjct: 416 L 416

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525098|ref|XP_003531164.1| PREDICTED: probable inositol transporter 2-like isoform 1 [Glycine max]

 Score =  652 bits (1683), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/421 (77%), Positives = 370/421 (87%), Gaps = 5/421 (1%)

Query: 1   MEGAVHGGGTTDASAFRECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDD 60
           MEG   GG   D SAFREC SLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDD
Sbjct: 1   MEG---GGVEVDVSAFRECLSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDD 57

Query: 61  FKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAP 120
           FK VD KT LQE+IVSMA+AGAIIGAA+GGW+NDRFGRR +IL+AD LFF+G+ +MAAA 
Sbjct: 58  FKEVDSKTWLQEAIVSMALAGAIIGAAVGGWINDRFGRRKAILLADTLFFIGSAVMAAAT 117

Query: 121 NPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLA 180
           NP  LI GRVFVGLGVGMASM SPLYISEASP ++RGALVS NGFLIT GQFLS LINLA
Sbjct: 118 NPSILIVGRVFVGLGVGMASMASPLYISEASPTRVRGALVSLNGFLITGGQFLSNLINLA 177

Query: 181 FTRAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVET 240
           FT+APGTWRWMLGVA +PAL+Q +LM++LPESPRWL+RKGREEE +AILRK+YP  EVE 
Sbjct: 178 FTKAPGTWRWMLGVAAVPALIQIVLMMMLPESPRWLFRKGREEEGKAILRKIYPPQEVEA 237

Query: 241 EIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSP 300
           EI  LKESV+ EI+E  +S+K+++VK+LKT+TVRRGL AG+GLQ+FQQFVGINTVMYYSP
Sbjct: 238 EINTLKESVEIEIKEAEASDKVSIVKMLKTKTVRRGLYAGMGLQIFQQFVGINTVMYYSP 297

Query: 301 TIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLS 360
           TIVQL+GFASNRTALLLSL+TSGLNA GSI+SIYFIDRTGRKKL++ SL GV+ SL VL+
Sbjct: 298 TIVQLAGFASNRTALLLSLITSGLNAFGSILSIYFIDRTGRKKLVLFSLCGVVFSLVVLT 357

Query: 361 AVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNK 420
            VFH++T+HSPMVSA+ETSHF+N TCPDY SA     WDCMKCLKA SP CGFCAS +NK
Sbjct: 358 VVFHQSTTHSPMVSALETSHFNN-TCPDYHSAVNPGGWDCMKCLKA-SPGCGFCASGANK 415

Query: 421 V 421
           +
Sbjct: 416 L 416

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530545|ref|XP_003533841.1| PREDICTED: probable inositol transporter 2-like isoform 1 [Glycine max]

 Score =  650 bits (1677), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/422 (75%), Positives = 368/422 (87%), Gaps = 6/422 (1%)

Query: 1   MEGAVHGGGTTDASAFRECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDD 60
           MEG V      D SAFREC SLSWKNPYVLRLAFSAGIGG LFGYDTGVISGALLYIRDD
Sbjct: 1   MEGGVP---EADISAFRECLSLSWKNPYVLRLAFSAGIGGFLFGYDTGVISGALLYIRDD 57

Query: 61  FKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAP 120
           FK VDRKT LQE+IVSMA+AGAIIGA++GGW+NDRFGR+ +IL+AD LFF+G+++MAAA 
Sbjct: 58  FKEVDRKTWLQEAIVSMALAGAIIGASVGGWINDRFGRKKAILLADTLFFIGSIVMAAAI 117

Query: 121 NPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLA 180
           NP  LI GRVFVGLGVGMASM SPLYISEASP ++RGALVS NGFLIT GQFLSY+INLA
Sbjct: 118 NPAILIVGRVFVGLGVGMASMASPLYISEASPTRVRGALVSLNGFLITGGQFLSYVINLA 177

Query: 181 FTRAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVET 240
           FT APGTWRWMLGVA +PAL Q ILM+LLPESPRWL+RKG++EEA+ ILR++YP  +VE 
Sbjct: 178 FTSAPGTWRWMLGVAAVPALTQIILMVLLPESPRWLFRKGKQEEAKEILRRIYPPQDVED 237

Query: 241 EIRDLKESVDKEIEEEGS-SEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYS 299
           EI  LKES++ E+ EE S S K++++KLLKT+TVRRGL AG+GLQ+FQQFVGINTVMYYS
Sbjct: 238 EINALKESIETELNEEASASNKVSIMKLLKTKTVRRGLYAGMGLQIFQQFVGINTVMYYS 297

Query: 300 PTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVL 359
           PTIVQL+GFASNR ALLLSLVT+GLNA GSI+SIYFID+TGR+KLL+ SL GV++SL VL
Sbjct: 298 PTIVQLAGFASNRVALLLSLVTAGLNAFGSILSIYFIDKTGRRKLLLFSLCGVVVSLVVL 357

Query: 360 SAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSN 419
           +  FHETT+HSPMVS +ETSHF+N TCPDYS+A     WDCMKCLKA SP+CGFCAS +N
Sbjct: 358 TVAFHETTTHSPMVSTIETSHFNN-TCPDYSTAFNPGEWDCMKCLKA-SPECGFCASRAN 415

Query: 420 KV 421
           K+
Sbjct: 416 KL 417

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556509|ref|XP_003546567.1| PREDICTED: probable inositol transporter 2-like [Glycine max]

 Score =  647 bits (1670), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/429 (73%), Positives = 364/429 (84%), Gaps = 5/429 (1%)

Query: 1   MEGAVHGGGTTDASAFRECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDD 60
           MEG V      D SAFREC SLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYI+D+
Sbjct: 1   MEGGVP---EADMSAFRECLSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIKDE 57

Query: 61  FKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAP 120
           FK+VDRKT LQE+IVS A+AGAIIGA++GGW+NDRFGR+  I++AD LFF+G+VIMAAA 
Sbjct: 58  FKAVDRKTWLQEAIVSTAIAGAIIGASVGGWINDRFGRKKGIVIADTLFFIGSVIMAAAS 117

Query: 121 NPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLA 180
           +P  LI GRVFVG+GVGMASM SPLYISEASP ++RGALVS N FLIT GQFLSYLINLA
Sbjct: 118 SPAILIVGRVFVGIGVGMASMASPLYISEASPTRVRGALVSLNSFLITGGQFLSYLINLA 177

Query: 181 FTRAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVET 240
           FT+APGTWRWMLGVA +PALLQ +LML LPESPRWLYRKG+EEEA++IL+K+YP HEVE 
Sbjct: 178 FTKAPGTWRWMLGVAAVPALLQIVLMLTLPESPRWLYRKGKEEEAKSILKKIYPPHEVEG 237

Query: 241 EIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSP 300
           EI+ LKESVD EI+E  SSEKIN+VKLL+T  VRRGL AGVGL +FQQFVGINTVMYYSP
Sbjct: 238 EIQALKESVDMEIKEAESSEKINIVKLLRTSAVRRGLYAGVGLLIFQQFVGINTVMYYSP 297

Query: 301 TIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLS 360
           TIVQL+GFASNRTALLLSL+T+GLNA GSI+SIYFID+TGRKKL +ISL GV+ SL +L+
Sbjct: 298 TIVQLAGFASNRTALLLSLITAGLNAFGSILSIYFIDKTGRKKLALISLCGVVFSLALLT 357

Query: 361 AVFHETTSHSPMVSAVETSHF-SNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSN 419
           A F E+  HSPMVSA+++S F +N TCPDY +A  +  W CM CLKA SP CG+CA+   
Sbjct: 358 AAFRESEIHSPMVSAIQSSQFNNNNTCPDYKTALNSAEWTCMTCLKA-SPSCGYCAADDK 416

Query: 420 KVKGISAIS 428
            + G   I+
Sbjct: 417 LLPGACLIA 425

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326518016|dbj|BAK07260.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  626 bits (1614), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 329/419 (78%), Positives = 367/419 (87%), Gaps = 6/419 (1%)

Query: 1   MEGAVHGGGTTDASAFRECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDD 60
           MEG  HG    D SAFRECFSLSW+NPY+LRLAFSAGIGGLLFGYDTGVISGALLYIRDD
Sbjct: 1   MEGGAHG---FDGSAFRECFSLSWRNPYILRLAFSAGIGGLLFGYDTGVISGALLYIRDD 57

Query: 61  FKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAP 120
           F+SVD+ T LQE IVSMAVAGAIIGAA+GGW NDRFGRRTSILVAD LFF GAV+MA+A 
Sbjct: 58  FRSVDKNTWLQEMIVSMAVAGAIIGAAVGGWANDRFGRRTSILVADLLFFAGAVVMASAT 117

Query: 121 NPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLA 180
            P  L+ GRVFVGLGVGMASMT+PLYISEASPA+IRGALVSTNGFLIT GQFLSYLINLA
Sbjct: 118 GPVQLVVGRVFVGLGVGMASMTAPLYISEASPARIRGALVSTNGFLITGGQFLSYLINLA 177

Query: 181 FTRAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPA-HEVE 239
           FT+APGTWRWMLGVAG+PA++QF+LML LPESPRWLYRKGR EEA+AILRK+Y A  EVE
Sbjct: 178 FTKAPGTWRWMLGVAGLPAVVQFVLMLFLPESPRWLYRKGRVEEAEAILRKIYTAEEEVE 237

Query: 240 TEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYS 299
            E+++LKESV+ E  E GSSEK++L  L+KT TVRR L+AGVGLQVFQQ VGINTVMYYS
Sbjct: 238 REMQELKESVEAEARERGSSEKVSLTALVKTATVRRALVAGVGLQVFQQLVGINTVMYYS 297

Query: 300 PTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVL 359
           P+IVQL+GFASN+TAL LSLVTSGLNA GSIVSIYFIDRTGR+KLLVISL GVI SL +L
Sbjct: 298 PSIVQLAGFASNQTALALSLVTSGLNALGSIVSIYFIDRTGRRKLLVISLVGVIASLALL 357

Query: 360 SAVFHETTSHSPMVSAVETSHFS-NLTCPDYSSAATAD-RWDCMKCLKASSPDCGFCAS 416
           SAVFHETTSHSP V + ET HF  +LTCPDY + +++   WDC +CLKASS +CGFCAS
Sbjct: 358 SAVFHETTSHSPAVGSAETGHFDGSLTCPDYRTTSSSGWEWDCTRCLKASSTECGFCAS 416

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	432
TAIR|locus:2009832	580	INT2 "inositol transporter 2"	0.967	0.720	0.710	1.8e-158
TAIR|locus:2130689	582	INT4 "inositol transporter 4"	0.946	0.702	0.581	4.3e-125
TAIR|locus:2058774	580	INT3 "nositol transporter 3" [	0.916	0.682	0.555	2.4e-115
TAIR|locus:2058193	509	INT1 "inositol transporter 1"	0.729	0.618	0.559	4.8e-94
UNIPROTKB|E1BML6	648	SLC2A13 "Uncharacterized prote	0.923	0.615	0.369	1.2e-65
UNIPROTKB|Q96QE2	648	SLC2A13 "Proton myo-inositol c	0.909	0.606	0.373	1.2e-65
UNIPROTKB|F1PGX9	652	SLC2A13 "Uncharacterized prote	0.916	0.607	0.371	2.5e-65
MGI|MGI:2146030	637	Slc2a13 "solute carrier family	0.847	0.574	0.384	8.5e-65
RGD|621814	637	Slc2a13 "solute carrier family	0.847	0.574	0.384	8.5e-65
ZFIN|ZDB-GENE-090812-1	546	slc2a13b "solute carrier famil	0.618	0.489	0.439	4.2e-59

TAIR|locus:2009832 INT2 "inositol transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1544 (548.6 bits), Expect = 1.8e-158, P = 1.8e-158
 Identities = 299/421 (71%), Positives = 336/421 (79%)

Query:     1 MEGAV-HGGGTTDASAFRECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRD 59
             MEG + HGG   D SAF+ECFSL+WKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRD
Sbjct:     1 MEGGIIHGGA--DESAFKECFSLTWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRD 58

Query:    60 DFKSVDRKTLLQESIVSMAVXXXXXXXXXXXWMNDRFGRRTSILVADFLFFVGAVIMAAA 119
             DFKSVDR T LQE IVSMAV           W ND+ GRR++IL+ADFLF +GA+IMAAA
Sbjct:    59 DFKSVDRNTWLQEMIVSMAVAGAIVGAAIGGWANDKLGRRSAILMADFLFLLGAIIMAAA 118

Query:   120 PNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINL 179
             PNP  L+ GRVFVGLGVGMASMT+PLYISEASPAKIRGALVSTNGFLIT GQFLSYLINL
Sbjct:   119 PNPSLLVVGRVFVGLGVGMASMTAPLYISEASPAKIRGALVSTNGFLITGGQFLSYLINL 178

Query:   180 AFTRAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVE 239
             AFT   GTWRWMLG+AGIPALLQF+LM  LPESPRWLYRKGREEEA+AILR++Y A +VE
Sbjct:   179 AFTDVTGTWRWMLGIAGIPALLQFVLMFTLPESPRWLYRKGREEEAKAILRRIYSAEDVE 238

Query:   240 TEIRDLKESVDXXXXXXXXXXXXNLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYS 299
              EIR LK+SV+            N++KL K +TVRRGLIAGVGLQVFQQFVGINTVMYYS
Sbjct:   239 QEIRALKDSVETEILEEGSSEKINMIKLCKAKTVRRGLIAGVGLQVFQQFVGINTVMYYS 298

Query:   300 PTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKXXXXXXXXXXXXXXXX 359
             PTIVQL+GFASNRTALLLSLVT+GLNA GSI+SIYFIDR GRKK                
Sbjct:   299 PTIVQLAGFASNRTALLLSLVTAGLNAFGSIISIYFIDRIGRKKLLIISLFGVIISLGIL 358

Query:   360 XAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSN 419
               VF+E  +H+P +S++ET  F+N++CPDY SA   + WDCM CLKASSP CG+C+S   
Sbjct:   359 TGVFYEAATHAPAISSLETQRFNNISCPDYKSAMNTNAWDCMTCLKASSPSCGYCSSPIG 418

Query:   420 K 420
             K
Sbjct:   419 K 419

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005366 "myo-inositol:hydrogen symporter activity" evidence=IMP;IDA

GO:0015798 "myo-inositol transport" evidence=IDA

GO:0023052 "signaling" evidence=TAS

GO:0090406 "pollen tube" evidence=TAS

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2130689 INT4 "inositol transporter 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1229 (437.7 bits), Expect = 4.3e-125, P = 4.3e-125
 Identities = 245/421 (58%), Positives = 296/421 (70%)

Query:     5 VHGG-GTTDASAFRECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKS 63
             V GG    D + F EC+  +WK PY++RLA SAGIGGLLFGYDTGVISGALL+I++DF  
Sbjct:     2 VEGGIAKADKTEFTECWRTTWKTPYIMRLALSAGIGGLLFGYDTGVISGALLFIKEDFDE 61

Query:    64 VDRKTLLQESIVSMAVXXXXXXXXXXXWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPG 123
             VD+KT LQ +IVSMAV           W+ND+FGRR SIL+AD LF +GA++MA AP P 
Sbjct:    62 VDKKTWLQSTIVSMAVAGAIVGAAVGGWINDKFGRRMSILIADVLFLIGAIVMAFAPAPW 121

Query:   124 ALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTR 183
              +I GR+FVG GVGMASMTSPLYISEASPA+IRGALVSTNG LIT GQF SYLINLAF  
Sbjct:   122 VIIVGRIFVGFGVGMASMTSPLYISEASPARIRGALVSTNGLLITGGQFFSYLINLAFVH 181

Query:   184 APGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIR 243
              PGTWRWMLGVAG+PA++QF+LML LPESPRWLYRK R  E++AIL ++YPA EVE E+ 
Sbjct:   182 TPGTWRWMLGVAGVPAIVQFVLMLSLPESPRWLYRKDRIAESRAILERIYPADEVEAEME 241

Query:   244 DLKESVDXXXXXXXXXXXXNLVKL---LKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSP 300
              LK SV+               KL        VRRGL AG+ +QV QQFVGINTVMYYSP
Sbjct:   242 ALKLSVEAEKADEAIIGDSFSAKLKGAFGNPVVRRGLAAGITVQVAQQFVGINTVMYYSP 301

Query:   301 TIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKXXXXXXXXXXXXXXXXX 360
             +IVQ +G+ASN+TA+ LSL+TSGLNA GSIVS+ F+DR GR+K                 
Sbjct:   302 SIVQFAGYASNKTAMALSLITSGLNALGSIVSMMFVDRYGRRKLMIISMFGIIACLIILA 361

Query:   361 AVFHETTSHSPMVSAVETSHFS-NLTCPDYSSAATAD----RWDCMKCLKASSPDCGFCA 415
              VF +   H+P + A E+  F+ N TC  Y+  A  +    RW+CMKCL++   +CGFCA
Sbjct:   362 TVFSQAAIHAPKIDAFESRTFAPNATCSAYAPLAAENAPPSRWNCMKCLRS---ECGFCA 418

Query:   416 S 416
             S
Sbjct:   419 S 419

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005366 "myo-inositol:hydrogen symporter activity" evidence=IGI

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2058774 INT3 "nositol transporter 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1137 (405.3 bits), Expect = 2.4e-115, P = 2.4e-115
 Identities = 226/407 (55%), Positives = 283/407 (69%)

Query:    18 ECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSM 77
             E ++ +W+ PY++RLA SAGIGGLLFGY+TGVI+GALLYI+++F  VD KT LQE IVSM
Sbjct:    15 EVWTTTWETPYIMRLALSAGIGGLLFGYNTGVIAGALLYIKEEFGEVDNKTWLQEIIVSM 74

Query:    78 AVXXXXXXXXXXXWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVG 137
              V           W ND+FGRR S+L+AD LF +GA++M  A  P  +I GR+ VG GVG
Sbjct:    75 TVAGAIVGAAIGGWYNDKFGRRMSVLIADVLFLLGALVMVIAHAPWVIILGRLLVGFGVG 134

Query:   138 MASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGI 197
             MASMTSPLYISE SPA+IRGALVSTNG LIT GQFLSYLINLAF   PGTWRWMLGV+ I
Sbjct:   135 MASMTSPLYISEMSPARIRGALVSTNGLLITGGQFLSYLINLAFVHTPGTWRWMLGVSAI 194

Query:   198 PALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDXXXXXXX 257
             PA++QF LML LPESPRWLYR  R+ E++ IL ++YPA  VE EI  LKESV        
Sbjct:   195 PAIIQFCLMLTLPESPRWLYRNDRKAESRDILERIYPAEMVEAEIAALKESVRAETADED 254

Query:   258 XXXXXNLVKL---LKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTA 314
                     KL   L    VR GL AG+ +QV QQFVGINTVMYYSPTI+Q +G+ASN+TA
Sbjct:   255 IIGHTFSDKLRGALSNPVVRHGLAAGITVQVAQQFVGINTVMYYSPTILQFAGYASNKTA 314

Query:   315 LLLSLVTSGLNAAGSIVSIYFIDRTGRKKXXXXXXXXXXXXXXXXXAVFHETTSHSPMVS 374
             + L+L+TSGLNA GS+VS+ F+DR GR+K                 AVF+E ++H+P + 
Sbjct:   315 MALALITSGLNAVGSVVSMMFVDRYGRRKLMIISMFGIITCLVILAAVFNEASNHAPKID 374

Query:   375 AVETSHFS-NLTCPDYS----SAATADRWDCMKCLKASSPDCGFCAS 416
               ++ +F+ N TCP ++    S +    W+CMKCL+    DCGFC++
Sbjct:   375 KRDSRNFAKNATCPAFAPFTASRSPPSNWNCMKCLQY---DCGFCSN 418

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2058193 INT1 "inositol transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 936 (334.5 bits), Expect = 4.8e-94, P = 4.8e-94
 Identities = 178/318 (55%), Positives = 234/318 (73%)

Query:    26 NPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVXXXXXX 85
             N Y+L L  +AGIGGLLFGYDTGVISGALLYI+DDF+ V + + LQE+IVSMA+      
Sbjct:    28 NSYILGLTVTAGIGGLLFGYDTGVISGALLYIKDDFEVVKQSSFLQETIVSMALVGAMIG 87

Query:    86 XXXXXWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPL 145
                  W+ND +GR+ + L AD +F  GA++MAAAP+P  LI+GR+ VGLGVG+AS+T+P+
Sbjct:    88 AAAGGWINDYYGRKKATLFADVVFAAGAIVMAAAPDPYVLISGRLLVGLGVGVASVTAPV 147

Query:   146 YISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFIL 205
             YI+EASP+++RG LVSTN  +IT GQFLSYL+N AFT+ PGTWRWMLGV+G+PA++QFIL
Sbjct:   148 YIAEASPSEVRGGLVSTNVLMITGGQFLSYLVNSAFTQVPGTWRWMLGVSGVPAVIQFIL 207

Query:   206 MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDXXXXXXXXXXXXNLV 265
             ML +PESPRWL+ K R+ EA  +L + Y    +E EI  L  + +              +
Sbjct:   208 MLFMPESPRWLFMKNRKAEAIQVLARTYDISRLEDEIDHLSAAEEEEKQRKRTV---GYL 264

Query:   266 KLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLN 325
              + +++ +R   +AG GLQ FQQF GINTVMYYSPTIVQ++GF SN+ AL LSL+ + +N
Sbjct:   265 DVFRSKELRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFHSNQLALFLSLIVAAMN 324

Query:   326 AAGSIVSIYFIDRTGRKK 343
             AAG++V IYFID  GRKK
Sbjct:   325 AAGTVVGIYFIDHCGRKK 342

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005366 "myo-inositol:hydrogen symporter activity" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0015798 "myo-inositol transport" evidence=IMP

UNIPROTKB|E1BML6 SLC2A13 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
 Identities = 155/419 (36%), Positives = 230/419 (54%)

Query:     1 MEGA-VHGGGTTDAS-AFRECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIR 58
             ++GA   GGG  D   A R  F       +V  +A  + +GG LFGYDTGV+SGA+L ++
Sbjct:    51 LQGAGAGGGGVGDLERAARRQFQQDETPAFVYVVAVFSALGGFLFGYDTGVVSGAMLLLK 110

Query:    59 DDFKSVDRKTLLQESIVSMAVXXXXXXXXXXXWMNDRFGRRTSILVADFLFFVGAVIMAA 118
                 S+D   + QE +VS  V            +N  FGRR +IL+A  LF  G+ ++AA
Sbjct:   111 RQL-SLD--AMWQELLVSSTVGAAAVSALAGGALNGVFGRRAAILLASALFTAGSAVLAA 167

Query:   119 APNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLIN 178
             A N   L+ GR+ VGLG+G+ASMT P+YI+E SP  +RG LV+ N   IT GQF + +++
Sbjct:   168 ANNKETLLAGRLVVGLGIGIASMTVPVYIAEVSPPNLRGRLVTINTLFITGGQFFASVVD 227

Query:   179 LAFT--RAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAH 236
              AF+  +  G WR+MLG+A IPA++QF   L LPESPRWL +KG+ ++A+ IL ++    
Sbjct:   228 GAFSYLQKDG-WRYMLGLAAIPAVIQFFGFLFLPESPRWLIQKGQTQKARRILSQMRGNQ 286

Query:   237 EVETEIRDLKESVDXXXXXXXXXXXXNLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVM 296
              ++ E   +K +++             + ++L     RR LI G GLQ+FQQ  GINT+M
Sbjct:   287 TIDEEYDSIKNNIEEEEKEVGSAGPV-ICRMLSYPPTRRALIVGCGLQMFQQLSGINTIM 345

Query:   297 YYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKXXXXXXXXXXXXX 356
             YYS TI+Q+SG   +R A+ L+ +T+  N   ++V ++ +++ GR+K             
Sbjct:   346 YYSATILQMSGVEDDRLAIWLASITAFTNFIFTLVGVWLVEKVGRRKLTFGSLAGTTVAL 405

Query:   357 XXXXAVFHETTSHSPMVSAVETSHFS-NLTCPDYSSAATADRWDCMKCLKASSPDCGFC 414
                   F  +   SP ++         N TC  YS         C +C+    PDCGFC
Sbjct:   406 IILALGFLLSAQVSPPITFKPIPPLGQNTTCTRYSY--------CNECML--DPDCGFC 454

GO:0016021 "integral to membrane" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

UNIPROTKB|Q96QE2 SLC2A13 "Proton myo-inositol cotransporter" [Homo sapiens (taxid:9606)]

 Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
 Identities = 154/412 (37%), Positives = 227/412 (55%)

Query:     7 GGGTTDAS-AFRECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVD 65
             GGG  D   A R  F       +V  +A  + +GG LFGYDTGV+SGA+L ++    S+D
Sbjct:    58 GGGVGDLERAARRQFQQDETPAFVYVVAVFSALGGFLFGYDTGVVSGAMLLLKRQL-SLD 116

Query:    66 RKTLLQESIVSMAVXXXXXXXXXXXWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGAL 125
                L QE +VS  V            +N  FGRR +IL+A  LF  G+ ++AAA N   L
Sbjct:   117 --ALWQELLVSSTVGAAAVSALAGGALNGVFGRRAAILLASALFTAGSAVLAAANNKETL 174

Query:   126 ITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFT--R 183
             + GR+ VGLG+G+ASMT P+YI+E SP  +RG LV+ N   IT GQF + +++ AF+  +
Sbjct:   175 LAGRLVVGLGIGIASMTVPVYIAEVSPPNLRGRLVTINTLFITGGQFFASVVDGAFSYLQ 234

Query:   184 APGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIR 243
               G WR+MLG+A +PA++QF   L LPESPRWL +KG+ ++A+ IL ++     ++ E  
Sbjct:   235 KDG-WRYMLGLAAVPAVIQFFGFLFLPESPRWLIQKGQTQKARRILSQMRGNQTIDEEYD 293

Query:   244 DLKESVDXXXXXXXXXXXXNLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIV 303
              +K +++             + ++L     RR LI G GLQ+FQQ  GINT+MYYS TI+
Sbjct:   294 SIKNNIEEEEKEVGSAGPV-ICRMLSYPPTRRALIVGCGLQMFQQLSGINTIMYYSATIL 352

Query:   304 QLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKXXXXXXXXXXXXXXXXXAVF 363
             Q+SG   +R A+ L+ VT+  N   ++V ++ +++ GR+K                   F
Sbjct:   353 QMSGVEDDRLAIWLASVTAFTNFIFTLVGVWLVEKVGRRKLTFGSLAGTTVALIILALGF 412

Query:   364 HETTSHSPMVSAVETSHFS-NLTCPDYSSAATADRWDCMKCLKASSPDCGFC 414
               +   SP ++    +    N TC  YS         C +C+    PDCGFC
Sbjct:   413 VLSAQVSPRITFKPIAPSGQNATCTRYSY--------CNECML--DPDCGFC 454

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

UNIPROTKB|F1PGX9 SLC2A13 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 665 (239.2 bits), Expect = 2.5e-65, P = 2.5e-65
 Identities = 154/415 (37%), Positives = 229/415 (55%)

Query:     3 GAVHGGGTTDASAFRECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFK 62
             G   GGG  + +A R+ F       +V   A  + +GG LFGYDTGV+SGA+L ++    
Sbjct:    60 GGGGGGGDLERAARRQ-FQQDETPAFVYVAAVFSALGGFLFGYDTGVVSGAMLLLKRQL- 117

Query:    63 SVDRKTLLQESIVSMAVXXXXXXXXXXXWMNDRFGRRTSILVADFLFFVGAVIMAAAPNP 122
             S+D   L QE +VS  V            +N  FGRR +IL+A  LF  G+ ++AAA N 
Sbjct:   118 SLD--ALWQELLVSSTVGAAAVSALAGGALNGVFGRRAAILLASALFAAGSAVLAAAGNR 175

Query:   123 GALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFT 182
               L+ GR+ VGLG+G+ASMT P+YI+E SP  +RG LV+ N   IT GQF + +++ AF+
Sbjct:   176 ETLLAGRLVVGLGIGIASMTVPVYIAEVSPPNLRGRLVTINTLFITGGQFFASVVDGAFS 235

Query:   183 --RAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVET 240
               +  G WR+MLG+A IPA++QF   L LPESPRWL +KG+ ++A+ IL ++     ++ 
Sbjct:   236 YLQKDG-WRYMLGLAAIPAVIQFFGFLFLPESPRWLIQKGQTQKARRILSQMRGNQTIDE 294

Query:   241 EIRDLKESVDXXXXXXXXXXXXNLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSP 300
             E   +K +++             + ++L     RR LI G GLQ+FQQ  GINT+MYYS 
Sbjct:   295 EYDSIKNNIEEEEKEVGSAGPV-IYRMLSYPPTRRALIVGCGLQMFQQLSGINTIMYYSA 353

Query:   301 TIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKXXXXXXXXXXXXXXXXX 360
             TI+Q+SG   +R A+ L+ VT+  N   ++V ++ +++ GR+K                 
Sbjct:   354 TILQMSGVEDDRLAIWLASVTAFTNFIFTLVGVWLVEKVGRRKLTFGSLAGTTVALLVLA 413

Query:   361 AVFHETTSHSPMVSAVETSHFS-NLTCPDYSSAATADRWDCMKCLKASSPDCGFC 414
               F  +   SP ++    +    N +C  YS         C +C+    PDCGFC
Sbjct:   414 LGFLLSAQVSPRITFKPVAPSGQNTSCTRYSY--------CNECML--DPDCGFC 458

GO:0016021 "integral to membrane" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

MGI|MGI:2146030 Slc2a13 "solute carrier family 2 (facilitated glucose transporter), member 13" [Mus musculus (taxid:10090)]

 Score = 660 (237.4 bits), Expect = 8.5e-65, P = 8.5e-65
 Identities = 148/385 (38%), Positives = 221/385 (57%)

Query:    33 AFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVXXXXXXXXXXXWM 92
             AFSA +GG LFGYDTGV+SGA+L +R   + +    + QE +VS AV            +
Sbjct:    75 AFSA-LGGFLFGYDTGVVSGAMLLLR---RQMRLGAMWQELLVSGAVGAAAVAALAGGAL 130

Query:    93 NDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASP 152
             N   GRR++IL+A  L  VG+ ++AAA N   L+ GR+ VGLG+G+ASMT P+YI+E SP
Sbjct:   131 NGALGRRSAILLASALCTVGSAVLAAAANKETLLAGRLVVGLGIGIASMTVPVYIAEVSP 190

Query:   153 AKIRGALVSTNGFLITSGQFLSYLINLAFT--RAPGTWRWMLGVAGIPALLQFILMLLLP 210
               +RG LV+ N   IT GQF + +++ AF+  +  G WR+MLG+A IPA++QF+  L LP
Sbjct:   191 PNLRGRLVTINTLFITGGQFFASVVDGAFSYLQKDG-WRYMLGLAAIPAVIQFLGFLFLP 249

Query:   211 ESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDXXXXXXXXXXXXNLVKLLKT 270
             ESPRWL +KG+ ++A+ IL ++     ++ E   ++ S++             + ++L  
Sbjct:   250 ESPRWLIQKGQTQKARRILSQMRGNQTIDEEYDSIRNSIEEEEKEATAAGPI-ICRMLSY 308

Query:   271 RTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSI 330
                RR L+ G GLQ+FQQ  GINT+MYYS TI+Q+SG   +R A+ L+ +T+  N   ++
Sbjct:   309 PPTRRALVVGCGLQMFQQLSGINTIMYYSATILQMSGVEDDRLAIWLASITAFTNFIFTL 368

Query:   331 VSIYFIDRTGRKKXXXXXXXXXXXXXXXXXAVFHETTSHSPMVSAVETSHFS-NLTCPDY 389
             V ++ +++ GR+K                   F  +   SP V+   T+    N TC  Y
Sbjct:   369 VGVWLVEKVGRRKLTFGSLAGTTVALIILALGFLLSAQVSPRVTFRPTTPSDQNTTCTGY 428

Query:   390 SSAATADRWDCMKCLKASSPDCGFC 414
             S         C +C+    PDCGFC
Sbjct:   429 SY--------CNECML--DPDCGFC 443

GO:0005215 "transporter activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

RGD|621814 Slc2a13 "solute carrier family 2 (facilitated glucose transporter), member 13" [Rattus norvegicus (taxid:10116)]

 Score = 660 (237.4 bits), Expect = 8.5e-65, P = 8.5e-65
 Identities = 148/385 (38%), Positives = 221/385 (57%)

Query:    33 AFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVXXXXXXXXXXXWM 92
             AFSA +GG LFGYDTGV+SGA+L +R   + +    + QE +VS AV            +
Sbjct:    75 AFSA-LGGFLFGYDTGVVSGAMLLLR---RQMRLGAMWQELLVSGAVGAAAVAALAGGAL 130

Query:    93 NDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASP 152
             N   GRR++IL+A  L  VG+ ++AAA N   L+ GR+ VGLG+G+ASMT P+YI+E SP
Sbjct:   131 NGALGRRSAILLASALCTVGSAVLAAAANKETLLAGRLVVGLGIGIASMTVPVYIAEVSP 190

Query:   153 AKIRGALVSTNGFLITSGQFLSYLINLAFT--RAPGTWRWMLGVAGIPALLQFILMLLLP 210
               +RG LV+ N   IT GQF + +++ AF+  +  G WR+MLG+A IPA++QF+  L LP
Sbjct:   191 PNLRGRLVTINTLFITGGQFFASVVDGAFSYLQKDG-WRYMLGLAAIPAVIQFLGFLFLP 249

Query:   211 ESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDXXXXXXXXXXXXNLVKLLKT 270
             ESPRWL +KG+ ++A+ IL ++     ++ E   ++ S++             + ++L  
Sbjct:   250 ESPRWLIQKGQTQKARRILSQMRGNQTIDEEYDSIRNSIEEEEKEASAAGPI-ICRMLSY 308

Query:   271 RTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSI 330
                RR L  G GLQ+FQQ  GINT+MYYS TI+Q+SG   +R A+ L+ +T+  N   ++
Sbjct:   309 PPTRRALAVGCGLQMFQQLSGINTIMYYSATILQMSGVEDDRLAIWLASITAFTNFIFTL 368

Query:   331 VSIYFIDRTGRKKXXXXXXXXXXXXXXXXXAVFHETTSHSPMVSAVETSHFS-NLTCPDY 389
             V ++ +++ GR+K                   F  +   SP V+   T+    N TC +Y
Sbjct:   369 VGVWLVEKVGRRKLTFGSLAGTTVALTILALGFLLSAQVSPRVTFRPTAPSGQNATCTEY 428

Query:   390 SSAATADRWDCMKCLKASSPDCGFC 414
             S         C +C+    PDCGFC
Sbjct:   429 SY--------CNECML--DPDCGFC 443

GO:0016021 "integral to membrane" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

ZFIN|ZDB-GENE-090812-1 slc2a13b "solute carrier family 2 (facilitated glucose transporter), member 13b" [Danio rerio (taxid:7955)]

 Score = 570 (205.7 bits), Expect = 4.2e-59, Sum P(2) = 4.2e-59
 Identities = 120/273 (43%), Positives = 172/273 (63%)

Query:    28 YVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVXXXXXXXX 87
             +V  LAF + +GG LFGYDTGV+SGA+L ++ + K     ++ QE +VS+ V        
Sbjct:    34 FVYTLAFFSALGGFLFGYDTGVVSGAMLLLKREKKL---SSVWQELLVSITVGAAAVSAL 90

Query:    88 XXXWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYI 147
                ++N RFGRR  IL+A F+F  G +I++ A N  AL+ GR+ VGLG+G+ASMT P+YI
Sbjct:    91 AGGFLNGRFGRRVCILLASFIFCAGGIILSVARNKEALLCGRLTVGLGLGIASMTVPVYI 150

Query:   148 SEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGT-WRWMLGVAGIPALLQFILM 206
             +E SP  +RG LV+ N   IT GQF++ +++ AF+  P   WR+MLG++ +PA LQF+  
Sbjct:   151 AEVSPPDLRGQLVTVNTLFITGGQFIASVVDGAFSYLPHDGWRFMLGLSVVPAALQFLGF 210

Query:   207 LLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDXXXXXXXXXXXXNLVK 266
             L LPESPRWL +KG  + A  +LR++    +VE E   ++ S+              L +
Sbjct:   211 LFLPESPRWLLQKGFTQNALLVLRQIRGDVDVEEEFESIRCSIQEEQRDVAGGPV--LWR 268

Query:   267 LLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYS 299
             +L +   RR LI G GLQ+FQQ  GINTV+YYS
Sbjct:   269 MLASPPARRALIVGCGLQMFQQLAGINTVIYYS 301

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0015758 "glucose transport" evidence=IDA

GO:0055056 "D-glucose transmembrane transporter activity" evidence=IDA

GO:0035428 "hexose transmembrane transport" evidence=IDA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C757	INT2_ARATH	No assigned EC number	0.7862	0.9675	0.7206	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00028332001 SubName- Full=Chromosome chr10 scaffold_43, whole genome shotgun sequence; (577 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	432
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	2e-89
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	9e-88
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	2e-71
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	1e-24
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	9e-24
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	4e-21
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	7e-19
TIGR00891	405	TIGR00891, 2A0112, putative sialic acid transporte	2e-14
PRK03893	496	PRK03893, PRK03893, putative sialic acid transport	2e-13
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	1e-11
PRK11551	406	PRK11551, PRK11551, putative 3-hydroxyphenylpropio	4e-11
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	1e-10
TIGR00893	399	TIGR00893, 2A0114, D-galactonate transporter	7e-10
TIGR00887	502	TIGR00887, 2A0109, phosphate:H+ symporter	4e-09
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	4e-08
TIGR00883	394	TIGR00883, 2A0106, metabolite-proton symporter	6e-08
PRK12307	426	PRK12307, PRK12307, putative sialic acid transport	1e-07
COG0477	338	COG0477, ProP, Permeases of the major facilitator	3e-07
TIGR00711	485	TIGR00711, efflux_EmrB, drug resistance transporte	3e-07
TIGR01299	742	TIGR01299, synapt_SV2, synaptic vesicle protein SV	3e-07
pfam13347	425	pfam13347, MFS_2, MFS/sugar transport protein	1e-06
pfam06609	598	pfam06609, TRI12, Fungal trichothecene efflux pump	6e-06
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	1e-05
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	2e-05
PRK10406	432	PRK10406, PRK10406, alpha-ketoglutarate transporte	3e-05
TIGR00900	365	TIGR00900, 2A0121, H+ Antiporter protein	8e-05
TIGR00710	385	TIGR00710, efflux_Bcr_CflA, drug resistance transp	1e-04
COG2807	395	COG2807, CynX, Cyanate permease [Inorganic ion tra	0.001

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score =  278 bits (713), Expect = 2e-89
 Identities = 134/344 (38%), Positives = 201/344 (58%), Gaps = 19/344 (5%)

Query: 32  LAFSAGIGGLLFGYDTGVISGALLYIRDDF--------KSVDRKTLLQESIVSMAVAGAI 83
           LA  A +GG LFGYDTGVI   L  I+            +    T+L   IVS+   G +
Sbjct: 1   LALVAALGGFLFGYDTGVIGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCL 60

Query: 84  IGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAP--NPGALITGRVFVGLGVGMASM 141
           IG+   G + DRFGR+ S+L+ + LF +GA++   A   +   LI GRV VGLGVG  S+
Sbjct: 61  IGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISV 120

Query: 142 TSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAF--TRAPGTWRWMLGVAGIPA 199
             P+YISE +P K+RGAL S     IT G  ++ +I L          WR  LG+  +PA
Sbjct: 121 LVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPA 180

Query: 200 LLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSS 259
           +L  I +L LPESPRWL  KG+ EEA+A+L K+    +V+ EI++ K+S+++ +E E +S
Sbjct: 181 ILLLIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVSDVDQEIQEEKDSLERSVEAEKAS 240

Query: 260 EKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSL 319
                 +L + +TVR+ L+ GV LQ+FQQ  GIN + YYSPTI +  G +    +LL+++
Sbjct: 241 WL----ELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGLS---DSLLVTI 293

Query: 320 VTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVF 363
           +   +N   + ++I+ +DR GR+ LL++  +G+ +   VL    
Sbjct: 294 IVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVAL 337

Length = 449

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score =  274 bits (704), Expect = 9e-88
 Identities = 143/349 (40%), Positives = 197/349 (56%), Gaps = 12/349 (3%)

Query: 26  NPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFK-----SVDRKTLLQESIVSMAVA 80
              V  L+  A IGGL+FGYDTGVI GAL     +FK     S    + L   +VS+ + 
Sbjct: 23  YWKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLV 82

Query: 81  GAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPN---PGALITGRVFVGLGVG 137
           G  IGA   GW++DRFGR+ S+L+   LF +GA++M  A        LI GRV +G+GVG
Sbjct: 83  GGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVG 142

Query: 138 MASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGT--WRWMLGVA 195
           +AS   P+Y+SE +P  +RGAL S     IT G  ++Y           T  WR  LG+ 
Sbjct: 143 IASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQ 202

Query: 196 GIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEE 255
            IPA L F+ +  LPESPRWL  KGR EEA+  L ++      + E+ D  E +D +   
Sbjct: 203 LIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSI 262

Query: 256 EGSSEKINLVKLLK-TRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTA 314
           E  S + +   L   TR +RR L  GV LQ FQQF GIN +MYYSPTI + +G  S   A
Sbjct: 263 EKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGV-STDHA 321

Query: 315 LLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVF 363
            L+S++   +N A + V+I+ +DR GR+ LL+I  +G+ + L VL  + 
Sbjct: 322 FLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILG 370

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score =  232 bits (593), Expect = 2e-71
 Identities = 132/364 (36%), Positives = 197/364 (54%), Gaps = 37/364 (10%)

Query: 26  NPYVLRLAFSAGIGGLLFGYDTGVISGAL-----LYIRDDFKSVDRKTLLQESIVSMAVA 80
           + Y+  +   A +GGLLFGYDT VISG +     +++     S      L    V+ A+ 
Sbjct: 7   SSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALI 66

Query: 81  GAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAV---------IMAAAPNPGALIT---G 128
           G IIG A+GG+ ++RFGRR S+ +A  LFF+ A+               N G +      
Sbjct: 67  GCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIY 126

Query: 129 RVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGT- 187
           R+  G+GVG+ASM SP+YI+E +PA IRG LVS N F I  GQ + Y +N    R+    
Sbjct: 127 RIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDAS 186

Query: 188 ------WRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETE 241
                 WR+M     IPALL  +L+  +PE+PR+L  +G++E+A+ ILRK+         
Sbjct: 187 WLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQA 246

Query: 242 IRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIA-GVGLQVFQQFVGINTVMYYSP 300
           ++++K S+D   +  G        KLL       G+I  GV L VFQQFVGIN V+YY+P
Sbjct: 247 LQEIKHSLDHGRKTGG--------KLL---MFGVGVIVIGVMLSVFQQFVGINVVLYYAP 295

Query: 301 TIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLS 360
            I +  G AS   ALL +++   +N   ++++I  +D+ GRK L +I   G+ + +  L 
Sbjct: 296 EIFKTLG-ASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLG 354

Query: 361 AVFH 364
             F+
Sbjct: 355 TAFY 358

Length = 479

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score =  103 bits (260), Expect = 1e-24
 Identities = 53/177 (29%), Positives = 83/177 (46%), Gaps = 4/177 (2%)

Query: 34  FSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMN 93
               +G  L G D G++S AL  + +D             IVS    G  +G+ + G+++
Sbjct: 2   LLLFLGFFLSGLDRGLLSPALPLLAEDLGLS---ASQAGLIVSAFSLGYALGSLLAGYLS 58

Query: 94  DRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPA 153
           DRFGRR  +L+   LF +G++++A A +   L+ GR  +GLG G     +   I+E  P 
Sbjct: 59  DRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPP 118

Query: 154 KIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLLLP 210
           K RG  +         G  L  L+      + G WRW+  +  I  LL  +L+L L 
Sbjct: 119 KERGRALGLFSAGFGLGALLGPLLGGLLAESLG-WRWLFLILAILGLLLALLLLFLL 174

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score =  102 bits (255), Expect = 9e-24
 Identities = 86/343 (25%), Positives = 139/343 (40%), Gaps = 28/343 (8%)

Query: 26  NPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIG 85
           + Y  R    + +  L+ GYD   +  A   I  ++  +D   L    + S  + G   G
Sbjct: 12  SRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEW-GLDPVQL--GFLFSAGLIGMAFG 68

Query: 86  AAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPL 145
           A   G + DR GRR  +L +  LF V  ++ A A N   L+  R   GLG+G        
Sbjct: 69  ALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNA 128

Query: 146 YISEASPAKIRGALVST--NGFLI--TSGQFLSYLINLAFTRAPGTWRWMLGVAGI-PAL 200
            +SE +P + RG  V     G+ I    G FL+  +   F      WR +  V GI P L
Sbjct: 129 LVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVF-----GWRSLFYVGGIAPLL 183

Query: 201 LQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSE 260
           L  +LM  LPES  +L  K R E  + I+  + P          ++      + E+ +++
Sbjct: 184 LLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQ---------MQAEAQSALPEQKATQ 233

Query: 261 KI--NLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLS 318
               ++ K L      R  +    L       G+  +  + P ++   GF+ +  A   +
Sbjct: 234 GTKRSVFKALFQGKTARITVLLWLLYFMLLV-GVYFLTNWLPKLMVELGFSLSLAATGGA 292

Query: 319 LVTSGLNAAGSIVSIYFIDRTGRKKLLVISL-SGVILSLGVLS 360
           L   G    GSI+  +  DR G +   ++ L   V   L   +
Sbjct: 293 LFNFG-GVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGST 334

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score = 95.1 bits (237), Expect = 4e-21
 Identities = 76/289 (26%), Positives = 138/289 (47%), Gaps = 19/289 (6%)

Query: 81  GAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMAS 140
           G ++G+ + G+++DRFGR+  +L++  +  V  V+ A +PN    +  R+ VG+G+G   
Sbjct: 139 GVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIW 198

Query: 141 MTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLA-FTRAPGTWRWMLGVAGIPA 199
           + + +  +E  P K R  + +      + G  L  L  +A F      WRW+     +P 
Sbjct: 199 VQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVL--LPLVAYFIP---DWRWLQLAVSLPT 253

Query: 200 LLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSS 259
            L F+L   +PESPRWL  +GR EEA  IL+++   +  +     L  S++K++    S 
Sbjct: 254 FLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSS--SK 311

Query: 260 EKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSL 319
           ++ + + L +T  +R+  +      +   F       YY   ++ L     N   + L L
Sbjct: 312 KQYSFLDLFRTPNLRKTTL----CLMMLWF--TTAFSYYG-LVLDLGNLGGN---IYLDL 361

Query: 320 VTSGL-NAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETT 367
             SGL      ++++  IDR GR+  +  SL    ++L +L  V  +  
Sbjct: 362 FISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLY 410

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 87.1 bits (216), Expect = 7e-19
 Identities = 76/340 (22%), Positives = 129/340 (37%), Gaps = 42/340 (12%)

Query: 38  IGGLLFGYDTGVISGAL-LYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRF 96
           +   L G    ++  AL LY+ +D             +++    G  +   + G ++DRF
Sbjct: 3   LAAFLAGLGRSLLGPALPLYLAEDLGISP---TEIGLLLTAFSLGYALAQPLAGRLSDRF 59

Query: 97  GRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIR 156
           GRR  +L+   LF +G +++  A +   L+  RV  GLG G     +   I++  P + R
Sbjct: 60  GRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEER 119

Query: 157 GALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLLLPESPRWL 216
           G  +         G  L  L+        G WR    +  I ALL  +L  LL       
Sbjct: 120 GRALGLLSAGFGLGAALGPLLGGLLASLFG-WRAAFLILAILALLAAVLAALL------- 171

Query: 217 YRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRG 276
                                     R   ES   +  EE  +  +   KLL    V   
Sbjct: 172 ------------------------LPRPPPESKRPKPAEEAPAPLVPAWKLLLRDPVLWL 207

Query: 277 LIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFI 336
           L+A +             ++ Y P   ++ G  S   A LL  +   L A G ++     
Sbjct: 208 LLALLLF-----GFAFFALLTYLPLYQEVLGL-SALLAGLLLGLAGLLGAIGRLLLGRLS 261

Query: 337 DRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAV 376
           DR GR++ L+++L  +IL+   L+ +    +S   +V+ +
Sbjct: 262 DRLGRRRRLLLALLLLILAALGLALLSLTESSLWLLVALL 301

Length = 346

>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter

 Score = 74.5 bits (183), Expect = 2e-14
 Identities = 55/241 (22%), Positives = 102/241 (42%), Gaps = 22/241 (9%)

Query: 22  LSWKNPYVLRLAFSAG-IGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVA 80
           L+         AFSA  +G LL  +D  +++  L  +  +F      T+   S++S A+ 
Sbjct: 6   LTRAQ----WNAFSAAWLGWLLDAFDFFLVALVLAEVAGEF---GLTTVDAASLISAALI 58

Query: 81  GAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMAS 140
               GA + G   DR+GRR  ++ +  LF  G +    AP    +   R+ +G+G+G   
Sbjct: 59  SRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEY 118

Query: 141 MTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPG-----TWRWMLGVA 195
            +S  Y+ E+ P  +R      +G LI SG  +  ++               WR +  ++
Sbjct: 119 GSSAAYVIESWPKHLRNKA---SGLLI-SGYAVGAVVAAQVYSLVVPVWGDGWRALFFIS 174

Query: 196 GIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVY-----PAHEVETEIRDLKESVD 250
            +P +    L   +PE+  W  +   +   + ++  +Y      A+ V T    + +S  
Sbjct: 175 ILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIANIVMTLAAAMVQSAG 234

Query: 251 K 251
           K
Sbjct: 235 K 235

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405

>gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional

 Score = 71.3 bits (175), Expect = 2e-13
 Identities = 50/200 (25%), Positives = 92/200 (46%), Gaps = 24/200 (12%)

Query: 31  RLAFSAGIGGLLFGYDTGVISGALLYIRDDF--KSVDRKTLLQESIVSMAVAGAIIGAAI 88
           +   +A +G LL G+D  +I+  L  ++ +F   +V   +L+  + +S    G ++GA  
Sbjct: 20  KAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGA-- 77

Query: 89  GGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYIS 148
              M DR+GRR +++++  LF VG +    AP    L   R+ +G+G+     +S  Y+ 
Sbjct: 78  ---MGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVI 134

Query: 149 EASPAKIRGALVSTNGFLIT--------SGQFLSYLINLAFTRAPGTWRWMLGVAGIPAL 200
           E+ P  +R      +GFLI+        + Q  S ++          WR +  +  +P +
Sbjct: 135 ESWPKHLRN---KASGFLISGFSIGAVVAAQVYSLVV------PVWGWRALFFIGILPII 185

Query: 201 LQFILMLLLPESPRWLYRKG 220
               L   LPE+  W  +  
Sbjct: 186 FALWLRKNLPEAEDWKEKHA 205

Length = 496

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 61.9 bits (151), Expect = 1e-11
 Identities = 40/137 (29%), Positives = 61/137 (44%), Gaps = 8/137 (5%)

Query: 80  AGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMA 139
            G +I + + G + DRFGR+  +LV  F+F +   + A + N   LI  R   G G   A
Sbjct: 9   LGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFA 68

Query: 140 SMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPG---TWRWMLGVAG 196
            +     I++  P + RG  +     L+++G  L  L+             WR       
Sbjct: 69  LVAGAALIADIYPPEERGVALG----LMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLA 124

Query: 197 IPALLQFILML-LLPES 212
           I AL  FIL+  LLPE+
Sbjct: 125 ILALAAFILLAFLLPET 141

Length = 141

>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

 Score = 63.8 bits (156), Expect = 4e-11
 Identities = 49/159 (30%), Positives = 79/159 (49%), Gaps = 8/159 (5%)

Query: 76  SMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLG 135
           S  + G + GA +GG + DR GR+  ++V+  LF + ++  A A +  +L+  R+  G+G
Sbjct: 57  SAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVG 116

Query: 136 VGMASMTSPLYI---SEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWML 192
           +G A    P  I   SEA   ++RG  VS     +  G  L+ +I +        WR + 
Sbjct: 117 LGGA---LPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGV-LAAGDAAWRHIF 172

Query: 193 GVAGI-PALLQFILMLLLPESPRWLYRKGREEEAQAILR 230
            V G+ P LL  +LM  LPES  +    G  ++   +LR
Sbjct: 173 YVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAPVLR 211

Length = 406

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 62.3 bits (152), Expect = 1e-10
 Identities = 47/185 (25%), Positives = 80/185 (43%), Gaps = 3/185 (1%)

Query: 28  YVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVA-GAIIGA 86
            +L L     +  L F   +    G L Y+    + V   +  +  ++      G I+GA
Sbjct: 169 LLLFLLRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGA 228

Query: 87  AIGGWMNDRFGRRTSILVADFLFF-VGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPL 145
            +GG ++DR GRR  +L+   L   +G +++A AP+   L+   + +G G+G A      
Sbjct: 229 LLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLT 288

Query: 146 YISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFIL 205
             SE +P + RG          + G  L  L+        G +  +  +    ALL  +L
Sbjct: 289 LASELAPPEARGTASGLFNTFGSLGGALGPLL-AGLLLDTGGYGGVFLILAALALLAALL 347

Query: 206 MLLLP 210
           +LLLP
Sbjct: 348 LLLLP 352

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter

 Score = 60.0 bits (146), Expect = 7e-10
 Identities = 72/325 (22%), Positives = 122/325 (37%), Gaps = 43/325 (13%)

Query: 50  ISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLF 109
           +S A   +++D   +         + S    G ++G   GGW+ DRFG R ++ V   ++
Sbjct: 13  LSFAAPMLQEDLG-LSAAQY--GYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIW 69

Query: 110 FVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITS 169
            V   + A A    +L   RV +G           L ++   PA  R   VS    +  S
Sbjct: 70  GVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVS----IFNS 125

Query: 170 GQFLSYLIN---LAFTRAPGTWRWMLGVAGIPALLQFILMLLL----PESPRWLYRKGRE 222
            Q L  +I    + +     +W+W   + G+  ++  +L L      P+  +WL      
Sbjct: 126 AQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKWL-----T 180

Query: 223 EEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVG 282
           EE + I+               L E   K      + +K  + +LLK R V        G
Sbjct: 181 EEEKYIVVG-----------GLLAEQQGK---GPSTPKKYQIKELLKDRRV-------WG 219

Query: 283 LQVFQQFVGINTVM--YYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTG 340
           L + Q  V I       + PT +      S   A  ++ +   +   G I+     D   
Sbjct: 220 LALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLL 279

Query: 341 RK-KLLVISLSGVILSLGVLSAVFH 364
           R+ K LV +    I++  VLS +  
Sbjct: 280 RRGKSLVFARKTAIIAGLVLSLLMF 304

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399

>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter

 Score = 58.2 bits (141), Expect = 4e-09
 Identities = 79/347 (22%), Positives = 140/347 (40%), Gaps = 46/347 (13%)

Query: 78  AVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNP------GALITGRVF 131
           A  G + G    GW+ D+ GR+    +   +  +  V    +P          L   R +
Sbjct: 65  ASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFW 124

Query: 132 VGLGVGMASMTSPLYISEASPAKIRGALVST----NGFLITSGQFLSYLINLAFT---RA 184
           +G+G+G     S +  SE +  K RGA+++      GF I +G  ++ ++   F     A
Sbjct: 125 LGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEA 184

Query: 185 PGT---------------WRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAIL 229
                             WR ++G   +PALL     L +PE+PR+     ++ E  A  
Sbjct: 185 AADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASD 244

Query: 230 RKVYPAHEVETEIRDL-KESVDKEIEEEGSSEKI-------NLVKLLKTRTVRRGL-IAG 280
                  ++E E  ++ K S   E+ +   S+         +   LL T      L IA 
Sbjct: 245 MSAVLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAF 304

Query: 281 VGLQVFQQFVGINTVMYYSPTIVQLSGFAS-NRTALLLSLVTSGLNAAGSIVSIYFIDRT 339
            G+ + Q+   I + + YSP     + +    +TA+   ++       G  V+++ +D  
Sbjct: 305 YGVNLNQKV--ILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDII 362

Query: 340 GRKKLLVISLSG-VILSL--GVLSAVFHETTSHSPMVSAVETSHFSN 383
           GRK    I L G  IL++   VL   ++  ++H  +   V    F+N
Sbjct: 363 GRK---PIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFAN 406

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 54.5 bits (132), Expect = 4e-08
 Identities = 79/361 (21%), Positives = 130/361 (36%), Gaps = 64/361 (17%)

Query: 21  SLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVA 80
             + + P  L L  +  +     G    V  G L  I  D   V      Q  +++    
Sbjct: 4   PATARKPMWLAL-LALALAAFAIGTTEFVPVGLLPPIAADL-GVSEGAAGQ--LITAYAL 59

Query: 81  GAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMA- 139
           G  +GA +   +  R  RR  +L    LF V  ++ A AP+   L+  R   GL  G+  
Sbjct: 60  GVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFW 119

Query: 140 SMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGT---WRW-MLGVA 195
           S+ + L      P K   AL      L+ +G  L+ ++ +      G    WR   L +A
Sbjct: 120 SIAAALAARLVPPGKRGRALA-----LVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIA 174

Query: 196 GIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEE 255
            +  L   +L  LLP S                                       EI  
Sbjct: 175 VLALLALLLLWKLLPPS---------------------------------------EISG 195

Query: 256 EGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTAL 315
                   L++LL+   V  GL+A   L +   F       Y  P +  ++GF+ +  +L
Sbjct: 196 SLPGPLRTLLRLLRRPGVLLGLLA-TFLFMTGHFALYT---YIRPFLESVAGFSVSAVSL 251

Query: 316 LLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSA 375
           +L L        G+++     DR G ++ L+ +L  + L+L  L+      T  SP ++ 
Sbjct: 252 VL-LAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTF-----TGASPALAL 304

Query: 376 V 376
            
Sbjct: 305 A 305

Length = 394

>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter

 Score = 54.2 bits (131), Expect = 6e-08
 Identities = 61/311 (19%), Positives = 121/311 (38%), Gaps = 61/311 (19%)

Query: 73  SIVSMAVAGA-----IIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPN------ 121
            + + A   A      +GA + G   DR GR+ ++++   +  +G +++   P+      
Sbjct: 34  LLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGI 93

Query: 122 --PGALITGRVFVGLGVGMASMTSPLYISEASPAKIRG------ALVSTNGFLITSGQF- 172
             P  L+  R+  G  +G     + LY++E +P   RG       + +  G L+ +    
Sbjct: 94  WAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVL 153

Query: 173 -LSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRK 231
            LSYL+        G WR    V+ +  L+   L   L E+P +   + + ++ +  + +
Sbjct: 154 LLSYLLGDDALLEWG-WRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEKHKKKRGPIAE 212

Query: 232 VYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVG 291
               H                                     R+  + G+GL V      
Sbjct: 213 TLTKH-------------------------------------RKPFLLGLGL-VIATTTT 234

Query: 292 INTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVI-SLS 350
              +  Y PT +  +   S  +ALL+ +++  L      +S    DR GR+ +L+I ++ 
Sbjct: 235 FYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVL 294

Query: 351 GVILSLGVLSA 361
             +L++ +L A
Sbjct: 295 AALLAVPLLMA 305

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394

>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional

 Score = 53.0 bits (127), Expect = 1e-07
 Identities = 52/190 (27%), Positives = 80/190 (42%), Gaps = 12/190 (6%)

Query: 34  FSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMN 93
           FSA +G +  G+D  +I   +  I+ D    D +      + + A  G   G A+ G + 
Sbjct: 21  FSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAF---LATAAFIGRPFGGALFGLLA 77

Query: 94  DRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASP- 152
           D+FGR+  ++ +   + VG  +   A     L   R  VG+G+      +  Y  E+ P 
Sbjct: 78  DKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPK 137

Query: 153 ---AKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLLL 209
              +K    LVS  GF I  G  ++     +F  A G WR    V  +P LL   +    
Sbjct: 138 HLKSKASAFLVS--GFGI--GNIIAAYFMPSFAEAYG-WRAAFFVGLLPVLLVIYIRARA 192

Query: 210 PESPRWLYRK 219
           PES  W   K
Sbjct: 193 PESKEWEEAK 202

Length = 426

>gnl|CDD|223553 COG0477, ProP, Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

 Score = 52.0 bits (123), Expect = 3e-07
 Identities = 73/338 (21%), Positives = 117/338 (34%), Gaps = 20/338 (5%)

Query: 31  RLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGG 90
           R   +  +  LL G D G++S AL  +         + L    ++S    G  IG+ + G
Sbjct: 2   RSLLALALAALLLGLDLGLLSPALPLLLSTLSLSSGRLLYG-LLLSAFFLGYAIGSLLAG 60

Query: 91  WMNDRFGRRTSILVADFLFFVGAVIMAAAPN--PGALITGRVFVGLGVGMASMTSPLYIS 148
            + DR+GRR  +++   LF +G +++A APN     L+  R+  GLG G     +   +S
Sbjct: 61  PLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLS 120

Query: 149 EASPAKIR--GALVSTNGFLITSGQFLSYLINLAFT-RAPGTWRWMLGVAGIPALLQFIL 205
           E  P       A+          G  L  L+           WR    +A +  LL  IL
Sbjct: 121 EWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLLLLIL 180

Query: 206 MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLV 265
           +LLL               A   L K+     +                  G    +  +
Sbjct: 181 VLLLDLLLAAPRLPLAVGLALIELGKLLLLLLILLLG--------------GLVLLLLGL 226

Query: 266 KLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLN 325
            L       R L+ G+GL +   FVG   ++   P ++  +G  S        L+   L 
Sbjct: 227 YLSAAGFGLRALLLGLGLALLALFVGALILLVLLPILLGAAGGLSALVGAAGGLLALILL 286

Query: 326 AAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVF 363
               ++           +L        IL  G L    
Sbjct: 287 GLAGLLGTLVGGSLLVDRLGRSLGLRAILLAGALLLAI 324

Length = 338

>gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA subfamily

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 43/184 (23%), Positives = 75/184 (40%), Gaps = 14/184 (7%)

Query: 30  LRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIG 89
           L L     +G  +   D+ +++ A+  I  D  S    + +Q  I S  +A AI    + 
Sbjct: 1   LLLTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGS--SLSQVQWVITSYMLANAIS-IPLT 57

Query: 90  GWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISE 149
           GW+  RFG R   L++ F F +G+++   APN   +I  RV  G G G     S   +  
Sbjct: 58  GWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLN 117

Query: 150 ASPAKIRGALVSTNGFLITSGQFL-----SYLINLAFTRAPGTWRWMLGVAGIPALLQFI 204
             P + RG  ++  G  +     L      ++I          WRW+  +     ++  +
Sbjct: 118 IYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENY------HWRWIFLINVPIGIIVVV 171

Query: 205 LMLL 208
           +   
Sbjct: 172 VAFF 175

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other]. Length = 485

>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2

 Score = 52.3 bits (125), Expect = 3e-07
 Identities = 44/207 (21%), Positives = 80/207 (38%), Gaps = 28/207 (13%)

Query: 76  SMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLG 135
            +   G ++GA   G + D+ GR+  +L+   +    A   +     G  +  R+  G G
Sbjct: 209 LIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFG 268

Query: 136 VGMASMTSPLYISEASPAKIRGALVS-TNGFLITSGQFLSYLI-------NLAFTRAPG- 186
           +G A      Y +E    + RG  +S    F +  G + + +          +F      
Sbjct: 269 IGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAY 328

Query: 187 ---TWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIR 243
              +WR  + V   P +     +  +PESPR+    G+ +EA  IL+ ++          
Sbjct: 329 QFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIH---------- 378

Query: 244 DLKESVDKEIEEEGSSEKINLVKLLKT 270
                 D  +  +G  EK+  V  +KT
Sbjct: 379 ------DTNMRAKGHPEKVFSVNHIKT 399

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742

>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein

 Score = 50.3 bits (121), Expect = 1e-06
 Identities = 50/215 (23%), Positives = 85/215 (39%), Gaps = 28/215 (13%)

Query: 16  FRECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIV 75
            R+ F   +KN  +L L     +  LL      V +G LLY    F  V     L   ++
Sbjct: 211 LRDMFKALFKNRPLLILL----LLYLLNALAMAVRNGLLLYY---FTYVLGNAGLFSVLL 263

Query: 76  SMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAP--NPGALITGRVFVG 133
            +    AI+GA +  W+  RFG++ + L+   L  +G V++   P  +    +   V  G
Sbjct: 264 LIGTIAAILGAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFFLPPGSLWLFLVLVVLAG 323

Query: 134 LGVGMASMTSPLYISEA-------SPAKIRGALVSTNGFLITSGQFLS---YLINLAFT- 182
           +G+G+A++     +++        +  +  G   S   F    G  L      + LAF  
Sbjct: 324 IGLGLATLLPWAMLADVVDYGEWKTGKRREGITFSLYSFADKLGGALGGAIVGLLLAFAG 383

Query: 183 --------RAPGTWRWMLGVAGIPALLQFILMLLL 209
                    A       L    IPA+L  + +L+L
Sbjct: 384 YVANATAQSAAALSGIRLLFTLIPAVLALLALLIL 418

This family is part of the major facilitator superfamily of membrane transport proteins. Length = 425

>gnl|CDD|115279 pfam06609, TRI12, Fungal trichothecene efflux pump (TRI12)

 Score = 48.1 bits (114), Expect = 6e-06
 Identities = 37/154 (24%), Positives = 69/154 (44%), Gaps = 6/154 (3%)

Query: 81  GAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMAS 140
           G  +   + G + DRFGRR  ++    +  VGA++   A     L+     +G+  G A 
Sbjct: 90  GQAVSILMMGRLTDRFGRRPFVIATHIIGLVGAIVGCTANKFNTLLAAMTLLGVAAGPAG 149

Query: 141 MTSPLYISE--ASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIP 198
             SPL+I E  ++  K  G L+ +   +  +G    +   LA     G WRW+  +  I 
Sbjct: 150 -ASPLFIGELMSNKTKFLGLLIVSAPTIAMNGAGPYFGQRLAIQ---GNWRWIFYIYIIM 205

Query: 199 ALLQFILMLLLPESPRWLYRKGREEEAQAILRKV 232
           + +  +L+++    P +    G++   +  L K+
Sbjct: 206 SAIAVLLIIIWYHPPSFAQLHGKKARKRDELAKL 239

This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster.It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes. Length = 598

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 3/104 (2%)

Query: 74  IVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAP---NPGALITGRV 130
           ++ +A     IG  + G ++DR GRR  +L+A  L  + A+ +A      +   L+   +
Sbjct: 242 LLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWLLVALL 301

Query: 131 FVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLS 174
            +G G G+        +S+ +P + RG          + G  L 
Sbjct: 302 LLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALG 345

Length = 346

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 1/89 (1%)

Query: 277 LIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFI 336
           L+  + L  F    G   ++ Y P  +Q     S   A LL  +       G+++     
Sbjct: 176 LLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLS 235

Query: 337 DRTGRKK-LLVISLSGVILSLGVLSAVFH 364
           DR GR++ LL+I L    L L +L+    
Sbjct: 236 DRLGRRRLLLLIGLLLAALGLLLLALAPS 264

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|182433 PRK10406, PRK10406, alpha-ketoglutarate transporter; Provisional

 Score = 46.0 bits (109), Expect = 3e-05
 Identities = 46/157 (29%), Positives = 69/157 (43%), Gaps = 17/157 (10%)

Query: 35  SAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKT--LLQESIVSMAVAGAIIGAAIGGWM 92
            A  G L+  +D  V S   LY    F      T  LLQ + V    A   +   IGGW+
Sbjct: 26  GASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGV---FAAGFLMRPIGGWL 82

Query: 93  ----NDRFGRRTSILVADFLFFVGAVIMAAAPN--------PGALITGRVFVGLGVGMAS 140
                D+ GR+ S+L++  +   G++++A  P         P  L+  R+F GL VG   
Sbjct: 83  FGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEY 142

Query: 141 MTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLI 177
            TS  Y+SE +    +G   S     +  GQ L+ L+
Sbjct: 143 GTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLV 179

Length = 432

>gnl|CDD|162098 TIGR00900, 2A0121, H+ Antiporter protein

 Score = 44.2 bits (105), Expect = 8e-05
 Identities = 31/164 (18%), Positives = 59/164 (35%), Gaps = 8/164 (4%)

Query: 16  FRECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIV 75
            RE      KNP +  L   A +  L+F      I     Y++        +       V
Sbjct: 199 TREGIKFVLKNPLLRTLLLLALLFNLVF---APAIVALFPYVQSK---YLGRGSTHYGWV 252

Query: 76  SMAVA-GAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNP-GALITGRVFVG 133
             A   GA++GA + G +   F R   +  A F+  +  +++   P      +     +G
Sbjct: 253 LAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIG 312

Query: 134 LGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLI 177
           +G G  ++     +    PA++ G +      L  +   L  ++
Sbjct: 313 VGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLIL 356

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 365

>gnl|CDD|233099 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA subfamily

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 4/75 (5%)

Query: 73  SIVSMAVAGAIIGAAIG----GWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITG 128
           SIV M +   ++G A G    G ++DR+GRR  +L+  F+F + ++ +A + N   L+  
Sbjct: 40  SIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVL 99

Query: 129 RVFVGLGVGMASMTS 143
           R     G    S+ S
Sbjct: 100 RFVQAFGASAGSVIS 114

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. Length = 385

>gnl|CDD|225365 COG2807, CynX, Cyanate permease [Inorganic ion transport and metabolism]

 Score = 40.3 bits (95), Expect = 0.001
 Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 4/131 (3%)

Query: 84  IGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTS 143
           + A     +  RFG   S+ +A  L   G +I +    P  L  G +  G G+ + ++  
Sbjct: 62  LFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLGGLP-LLFLGTLLAGAGIAVINVLL 120

Query: 144 PLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQF 203
           P  I    P ++ G +       + +G  L+  + +   +  G WR  LG   + ALL  
Sbjct: 121 PSLIKRDFPKRV-GLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLAL 179

Query: 204 ILMLLLPESPR 214
           ++   LP++ R
Sbjct: 180 LIW--LPQALR 188

Length = 395

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	432
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	100.0
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	100.0
KOG0569	485	consensus Permease of the major facilitator superf	100.0
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	100.0
PRK14995	495	methyl viologen resistance protein SmvA; Provision	100.0
PRK10077	479	xylE D-xylose transporter XylE; Provisional	100.0
PRK10406	432	alpha-ketoglutarate transporter; Provisional	100.0
KOG0254	513	consensus Predicted transporter (major facilitator	100.0
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	100.0
PRK10642	490	proline/glycine betaine transporter; Provisional	100.0
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	100.0
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	100.0
TIGR00898	505	2A0119 cation transport protein.	100.0
TIGR00891	405	2A0112 putative sialic acid transporter.	100.0
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	100.0
PRK12307	426	putative sialic acid transporter; Provisional	100.0
PRK11663	434	regulatory protein UhpC; Provisional	100.0
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	100.0
PRK03545	390	putative arabinose transporter; Provisional	100.0
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	100.0
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	100.0
PRK09952	438	shikimate transporter; Provisional	100.0
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	100.0
PRK15075	434	citrate-proton symporter; Provisional	99.98
TIGR00895	398	2A0115 benzoate transport.	99.98
PRK10504	471	putative transporter; Provisional	99.97
PRK09705	393	cynX putative cyanate transporter; Provisional	99.97
TIGR00893	399	2A0114 d-galactonate transporter.	99.97
PRK03893	496	putative sialic acid transporter; Provisional	99.97
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.97
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.97
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.97
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.97
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.97
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.97
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.97
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.97
PLN00028	476	nitrate transmembrane transporter; Provisional	99.97
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.97
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.97
PRK10091	382	MFS transport protein AraJ; Provisional	99.97
PRK10133	438	L-fucose transporter; Provisional	99.97
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.97
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.97
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.97
TIGR00900	365	2A0121 H+ Antiporter protein.	99.97
PRK03699	394	putative transporter; Provisional	99.97
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.97
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.96
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.96
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.96
PRK11043	401	putative transporter; Provisional	99.96
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.96
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.96
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.96
KOG2532	466	consensus Permease of the major facilitator superf	99.96
PRK05122	399	major facilitator superfamily transporter; Provisi	99.96
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.95
KOG2533	495	consensus Permease of the major facilitator superf	99.95
PRK12382	392	putative transporter; Provisional	99.95
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.95
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.95
PRK03633	381	putative MFS family transporter protein; Provision	99.95
TIGR00805	633	oat sodium-independent organic anion transporter.	99.95
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.95
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.95
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.95
PRK09874	408	drug efflux system protein MdtG; Provisional	99.95
PRK10489	417	enterobactin exporter EntS; Provisional	99.95
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.95
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.94
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.94
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.94
TIGR00901	356	2A0125 AmpG-related permease.	99.94
PRK11010	491	ampG muropeptide transporter; Validated	99.93
PRK10054	395	putative transporter; Provisional	99.93
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.93
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.92
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.92
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.92
PRK15011	393	sugar efflux transporter B; Provisional	99.92
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.92
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.91
PRK11902	402	ampG muropeptide transporter; Reviewed	99.91
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.9
KOG2615	451	consensus Permease of the major facilitator superf	99.9
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.9
PRK09528	420	lacY galactoside permease; Reviewed	99.89
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.89
PTZ00207	591	hypothetical protein; Provisional	99.89
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.89
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.88
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.88
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.87
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.86
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.86
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.85
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.81
KOG2563	480	consensus Permease of the major facilitator superf	99.8
PF13347	428	MFS_2: MFS/sugar transport protein	99.78
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.78
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.77
PRK10642	490	proline/glycine betaine transporter; Provisional	99.77
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.75
PRK09669	444	putative symporter YagG; Provisional	99.74
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.72
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.71
PRK10429	473	melibiose:sodium symporter; Provisional	99.71
PRK09848	448	glucuronide transporter; Provisional	99.67
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.65
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.64
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.64
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.63
KOG3626	735	consensus Organic anion transporter [Secondary met	99.61
PRK11462	460	putative transporter; Provisional	99.61
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.61
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.6
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.6
PRK15011	393	sugar efflux transporter B; Provisional	99.59
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.59
PRK09528	420	lacY galactoside permease; Reviewed	99.58
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.57
COG2211	467	MelB Na+/melibiose symporter and related transport	99.57
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.55
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.55
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.53
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.52
PRK05122	399	major facilitator superfamily transporter; Provisi	99.52
PRK09874	408	drug efflux system protein MdtG; Provisional	99.51
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.5
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.5
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.49
PRK12382	392	putative transporter; Provisional	99.49
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.47
PRK09705	393	cynX putative cyanate transporter; Provisional	99.46
PRK10489	417	enterobactin exporter EntS; Provisional	99.45
PRK03545	390	putative arabinose transporter; Provisional	99.44
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.44
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.44
PRK03699	394	putative transporter; Provisional	99.43
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.43
PRK03633	381	putative MFS family transporter protein; Provision	99.42
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.42
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.42
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.42
PRK09952	438	shikimate transporter; Provisional	99.41
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.4
TIGR00893	399	2A0114 d-galactonate transporter.	99.4
PRK03893	496	putative sialic acid transporter; Provisional	99.38
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.36
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.35
TIGR00891	405	2A0112 putative sialic acid transporter.	99.34
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	99.34
TIGR00900	365	2A0121 H+ Antiporter protein.	99.34
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.33
PRK11010	491	ampG muropeptide transporter; Validated	99.33
TIGR00895	398	2A0115 benzoate transport.	99.31
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.31
KOG0569	485	consensus Permease of the major facilitator superf	99.3
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.3
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.3
PRK10504	471	putative transporter; Provisional	99.29
PRK12307	426	putative sialic acid transporter; Provisional	99.28
TIGR00898	505	2A0119 cation transport protein.	99.26
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.24
PRK11663	434	regulatory protein UhpC; Provisional	99.24
PRK10054	395	putative transporter; Provisional	99.23
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.23
PRK15075	434	citrate-proton symporter; Provisional	99.23
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.22
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	99.22
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.21
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.21
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.2
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.19
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.18
PLN00028	476	nitrate transmembrane transporter; Provisional	99.18
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.17
PRK10091	382	MFS transport protein AraJ; Provisional	99.16
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.15
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.15
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.15
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.14
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.13
PRK11902	402	ampG muropeptide transporter; Reviewed	99.12
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.11
PRK09848	448	glucuronide transporter; Provisional	99.1
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.09
PRK10429	473	melibiose:sodium symporter; Provisional	99.08
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.08
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.06
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.05
PF13347	428	MFS_2: MFS/sugar transport protein	99.04
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.01
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.01
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.01
TIGR00901	356	2A0125 AmpG-related permease.	98.99
PRK09669	444	putative symporter YagG; Provisional	98.99
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.99
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.97
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.96
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.95
PRK10133	438	L-fucose transporter; Provisional	98.95
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.94
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.93
COG0477	338	ProP Permeases of the major facilitator superfamil	98.93
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.92
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	98.92
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.92
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.92
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.91
PRK11043	401	putative transporter; Provisional	98.87
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	98.86
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.86
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.84
KOG0637	498	consensus Sucrose transporter and related proteins	98.82
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.8
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.79
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.78
COG2211	467	MelB Na+/melibiose symporter and related transport	98.75
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.73
KOG3098	461	consensus Uncharacterized conserved protein [Funct	98.7
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.69
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.68
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.68
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	98.66
KOG3762	618	consensus Predicted transporter [General function	98.65
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.64
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.63
PRK11462	460	putative transporter; Provisional	98.61
KOG0254	513	consensus Predicted transporter (major facilitator	98.58
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.54
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.5
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.49
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.45
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.44
KOG2532	466	consensus Permease of the major facilitator superf	98.34
KOG3810	433	consensus Micronutrient transporters (folate trans	98.31
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	98.3
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.3
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.26
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	98.16
KOG2533	495	consensus Permease of the major facilitator superf	98.14
COG3202	509	ATP/ADP translocase [Energy production and convers	98.09
PRK15462	493	dipeptide/tripeptide permease D; Provisional	98.09
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	98.06
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	98.01
PF12832	77	MFS_1_like: MFS_1 like family	98.01
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	97.99
KOG3762	618	consensus Predicted transporter [General function	97.98
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.93
PF12832	77	MFS_1_like: MFS_1 like family	97.81
PTZ00207	591	hypothetical protein; Provisional	97.72
KOG2816	463	consensus Predicted transporter ADD1 (major facili	97.72
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	97.42
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	97.39
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	97.34
KOG2615	451	consensus Permease of the major facilitator superf	97.33
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	97.29
KOG3097	390	consensus Predicted membrane protein [Function unk	97.24
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	97.24
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.13
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	97.06
KOG3098	461	consensus Uncharacterized conserved protein [Funct	97.03
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	96.85
PRK03612	521	spermidine synthase; Provisional	96.78
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	96.61
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	96.54
KOG1330	493	consensus Sugar transporter/spinster transmembrane	96.54
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	96.32
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	95.99
TIGR00805	633	oat sodium-independent organic anion transporter.	95.73
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	95.62
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	95.62
KOG2563	480	consensus Permease of the major facilitator superf	95.46
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	95.14
KOG2325	488	consensus Predicted transporter/transmembrane prot	94.95
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	94.88
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	93.57
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	92.85
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	92.06
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	91.84
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	90.78
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	90.78
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	90.36
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	89.9
KOG3810	433	consensus Micronutrient transporters (folate trans	85.16
KOG0637	498	consensus Sucrose transporter and related proteins	85.14
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	83.88
PF06912	209	DUF1275: Protein of unknown function (DUF1275); In	83.62

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=100.00  E-value=8.1e-38  Score=306.40  Aligned_cols=388  Identities=19%  Similarity=0.208  Sum_probs=286.9

Q ss_pred             CCCChhHHHHHHHHHHhhcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHH
Q 013992           23 SWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSI  102 (432)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l  102 (432)
                      ....++.|..+++++++.+..+++...++.++|.+.++++.+..+.   +++.+++.++.+++++++|+++||+|||+++
T Consensus       159 ~~~~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~---g~l~s~~~lG~iiG~li~G~LsDR~GRR~~l  235 (742)
T TIGR01299       159 CGHGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGK---GMLGLIVYLGMMVGAFFWGGLADKLGRKQCL  235 (742)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence            3456778888888999999999999999999999999999988887   9999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhcc
Q 013992          103 LVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFT  182 (432)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~  182 (432)
                      ++++++.+++.++++++++++.++++|+++|++.+...+...+++.|++|+++|++.+++...++.+|.++++.++..+.
T Consensus       236 ii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il  315 (742)
T TIGR01299       236 LICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAII  315 (742)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988776554


Q ss_pred             CCC------------CchHHHHHhhHHHHHHHHHHHhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchH---HHH----H
Q 013992          183 RAP------------GTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVE---TEI----R  243 (432)
Q Consensus       183 ~~~------------~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~----~  243 (432)
                      ...            .+||+.+++.++++++.++.++++||+|+|+..+++.+++.+.++++...+...   ...    .
T Consensus       316 ~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~  395 (742)
T TIGR01299       316 PHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVN  395 (742)
T ss_pred             HhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHH
Confidence            321            249999999988888888778899999999999999999999998887655321   111    0


Q ss_pred             HHHHHhHHHH--H-HccCc----------------cchhHHHhhcccchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHH
Q 013992          244 DLKESVDKEI--E-EEGSS----------------EKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQ  304 (432)
Q Consensus       244 ~~~~~~~~~~--~-~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (432)
                      ..+.....++  + +.+..                .+.+.+++++. ..++.++.....+ ++...+++++..|.|.+++
T Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~-~~~~~tl~l~~~w-f~~~~~yygl~~w~P~~~~  473 (742)
T TIGR01299       396 HIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNP-EVREITIKLMGVW-FTLSFGYYGLSVWFPDMIK  473 (742)
T ss_pred             HHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCc-cHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence            1111000000  0 00000                01134455544 4555555544444 4455578899999998764


Q ss_pred             Hc---CC------------------------------C------------------------------------------
Q 013992          305 LS---GF------------------------------A------------------------------------------  309 (432)
Q Consensus       305 ~~---~~------------------------------~------------------------------------------  309 (432)
                      ..   ..                              .                                          
T Consensus       474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~  553 (742)
T TIGR01299       474 HLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFID  553 (742)
T ss_pred             HHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhh
Confidence            41   00                              0                                          


Q ss_pred             ---------------------------------------chhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhhHhHHH
Q 013992          310 ---------------------------------------SNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLS  350 (432)
Q Consensus       310 ---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~  350 (432)
                                                             +.........+..++.+++.++.|+++||+|||+++.++.+
T Consensus       554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~  633 (742)
T TIGR01299       554 TLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMV  633 (742)
T ss_pred             hhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence                                                   00112444566678889999999999999999999999888


Q ss_pred             HHHHHHHHHHHHHhccCCCCCccchhcccccccccccccccccccCccchhhhhccCCCCccccccccccccc
Q 013992          351 GVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKVKG  423 (432)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~g~~~~~~~~~~g  423 (432)
                      +.+++++++.+...   .....+..++.+++.....+......+|.+|+   +.|++  +.|++.+..+....
T Consensus       634 lsai~~ll~~~~~s---~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt---~~Rgt--a~Gi~~~~~rlGai  698 (742)
T TIGR01299       634 LSCISCFFLSFGNS---ESAMIALLCLFGGLSIAAWNALDVLTVELYPS---DKRAT--AFGFLNALCKAAAV  698 (742)
T ss_pred             HHHHHHHHHHHHcc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH---HHHHH--HHHHHHHHHHHHHH
Confidence            88887766655422   11122222333333333333333334555555   99999  99999887766543

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.5e-36  Score=265.90  Aligned_cols=363  Identities=17%  Similarity=0.057  Sum_probs=278.2

Q ss_pred             CChhHHHHHHHHHHhhcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHH
Q 013992           25 KNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILV  104 (432)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~  104 (432)
                      .+++|+.++..+++++...++.+..++...|++.++.+.+..|.   |.+.+.+.+.+.++..+.|.++||.+.|+.+..
T Consensus        23 y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~l---G~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~   99 (448)
T COG2271          23 YKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQL---GILGSAFSITYGVSKFVMGVLSDRSNPRYFMAF   99 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHhhhhcccCCCceeehH
Confidence            34678889999999999999999999999999999999999999   999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHH--hhcc
Q 013992          105 ADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLIN--LAFT  182 (432)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~--~~l~  182 (432)
                      ++++.++.+++++++++...+.+..++.|..+|.-+|++...++.|+|++|||+..++++.+.++|..+.+++.  +++.
T Consensus       100 gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~  179 (448)
T COG2271         100 GLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFA  179 (448)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998  8888


Q ss_pred             CCCCchHHHHHhhHHHHHHHHHH-HhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHc---cC
Q 013992          183 RAPGTWRWMLGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEE---GS  258 (432)
Q Consensus       183 ~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  258 (432)
                      .+.+ ||..|++.++++++..+. ++..+|+|+..-.+ +.|+                ..++..+..  +++++   -.
T Consensus       180 ~~~~-w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP-~ie~----------------~~~d~~e~~--~~~~~~~~ls  239 (448)
T COG2271         180 FHGG-WRAAFYFPGIIAIIVALILLFLLRDRPQSEGLP-PIEE----------------YRGDPLEIY--EEEKENEGLT  239 (448)
T ss_pred             hccc-hhHHHHHHHHHHHHHHHHHHHHhCCCccccCCC-CHHH----------------hhcCchhhh--hhhccCCCcc
Confidence            7776 999999999888776665 66778887521100 0111                000001100  01111   11


Q ss_pred             ccchhHHHhhcccchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013992          259 SEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDR  338 (432)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~  338 (432)
                      ..+.-.+.+++||..|...+..+++..     .-+.+..|.|.|+.+..+.+..++......+=.++++|++++|+++||
T Consensus       240 ~~~i~~~YVL~Nk~iW~la~a~vfvYi-----vR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDk  314 (448)
T COG2271         240 AWQIFVKYVLKNKLIWLLALANVFVYV-----VRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDK  314 (448)
T ss_pred             HHHHHHHHHHcChHHHHHHHHHHHHHH-----HHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            122345567778877765555444444     789999999999999999999999999999999999999999999999


Q ss_pred             h--CCchhhHhHHHHHHHHHHHHHHHHhccCCCCCccchhcccccccccccccccccccCccchhhhhccCCCCcccccc
Q 013992          339 T--GRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCAS  416 (432)
Q Consensus       339 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~g~~~~  416 (432)
                      +  |||.+..+.+.+....+++........+...........|++...+.........|..|+   +.-++  ++|+...
T Consensus       315 lfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK---~AaGt--A~Gf~Gl  389 (448)
T COG2271         315 LFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPK---KAAGT--ATGFVGL  389 (448)
T ss_pred             hcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccH---hhccc--hhchhhh
Confidence            7  566555444333333333333322222223333444555555555555555555666666   88888  8887655


Q ss_pred             cccc
Q 013992          417 HSNK  420 (432)
Q Consensus       417 ~~~~  420 (432)
                      ....
T Consensus       390 f~Yl  393 (448)
T COG2271         390 FAYL  393 (448)
T ss_pred             HHHH
Confidence            5444

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.8e-34  Score=264.63  Aligned_cols=382  Identities=31%  Similarity=0.494  Sum_probs=294.8

Q ss_pred             ChhHHHHHHHHHHhhcccceeccccchhhhhhhh--------ccc--cchh-hhHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 013992           26 NPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRD--------DFK--SVDR-KTLLQESIVSMAVAGAIIGAAIGGWMND   94 (432)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--------~~~--~~~~-~~~~~~~~~s~~~~~~~i~~~~~g~l~d   94 (432)
                      .++.........++.+-.++....+++..+.+.+        .+|  .++. -....+.+.+++.+|.++|+.+.+.++|
T Consensus         6 t~~L~~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~   85 (485)
T KOG0569|consen    6 TRRLLLAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLAD   85 (485)
T ss_pred             cHHHHHHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555566666677788888888876655433        344  2222 2334589999999999999999999999


Q ss_pred             cccchHHHHHHHHHHHHHHHHHHH---hCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHH
Q 013992           95 RFGRRTSILVADFLFFVGAVIMAA---APNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQ  171 (432)
Q Consensus        95 r~Grr~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~  171 (432)
                      |+|||..+..+.++..++.++..+   .+++++++++|++.|+..|........++.|..|++.||....+.+.+..+|.
T Consensus        86 ~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~  165 (485)
T KOG0569|consen   86 RFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGI  165 (485)
T ss_pred             hhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHH
Confidence            999999999998888888777655   57899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHh-hccCCCCchHHHHHhhHHHHHHHHHHHhhcCCCHHHHHH-cCCHHHHHHHHHHhCCCCchHHHHHHHHHHh
Q 013992          172 FLSYLINL-AFTRAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYR-KGREEEAQAILRKVYPAHEVETEIRDLKESV  249 (432)
Q Consensus       172 ~i~~~i~~-~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (432)
                      .++..++. .+......|++.+....+++++..+.+.++||+|||+.. +++++++++.++.+++.++.+++.+...+..
T Consensus       166 ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~  245 (485)
T KOG0569|consen  166 LLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREI  245 (485)
T ss_pred             HHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHH
Confidence            99976663 333333359999999999999999999999999999998 8999999999999998887666555444333


Q ss_pred             HHHHHHccCccchhHHHhhcccchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHH
Q 013992          250 DKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGS  329 (432)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (432)
                      ++++  ..+++..+.+++++++..|+.....+.+.+.+++.+.+.+.+|...++++.+.. ..++.......+....+.+
T Consensus       246 ~~~~--~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~-~~~a~~an~~~g~v~~~~t  322 (485)
T KOG0569|consen  246 EEEE--LEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFT-PEEAQYANLGIGIVNLLST  322 (485)
T ss_pred             HHhc--cccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHHH
Confidence            3222  222356788999999999999999999999999999999999999999998866 6667777788889999999


Q ss_pred             HHHHHHHhhhCCchhhHhHHHHHHHHHHHHHHHHhccCCC---CC---ccchh-cccccccccccccccccccCccchhh
Q 013992          330 IVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSH---SP---MVSAV-ETSHFSNLTCPDYSSAATADRWDCMK  402 (432)
Q Consensus       330 ~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (432)
                      +++.++.||.|||+.++.+..++.+..+++..........   ..   +...+ ....+..+..+.--...+|++|.   
T Consensus       323 ~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~---  399 (485)
T KOG0569|consen  323 LVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQ---  399 (485)
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCc---
Confidence            9999999999999999999988887776665544322211   11   11111 11122222333333444677777   


Q ss_pred             hhccCCCCccccc
Q 013992          403 CLKASSPDCGFCA  415 (432)
Q Consensus       403 ~~r~~~~~~g~~~  415 (432)
                      .-|+.  +...+.
T Consensus       400 ~~R~a--a~s~~~  410 (485)
T KOG0569|consen  400 SARSA--AQSVAT  410 (485)
T ss_pred             cchHH--HHHHHH
Confidence            77777  555443

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=100.00  E-value=5.4e-35  Score=282.49  Aligned_cols=388  Identities=17%  Similarity=0.220  Sum_probs=261.4

Q ss_pred             CCCChhHHHHHHHHHHhhcccceeccccchhhhhhhhcc-ccc-hhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchH
Q 013992           23 SWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDF-KSV-DRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRT  100 (432)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~-~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~  100 (432)
                      ..-.+++++.+..++++.+.+++|...++.+.|.+..++ +.+ ..+..+.+++.+.+.++..+++++.|+++||+|||+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~   87 (502)
T TIGR00887         8 APFGWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKR   87 (502)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHH
Confidence            334567788888889999999999999999999887653 211 112223389999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhCC------hhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHH
Q 013992          101 SILVADFLFFVGAVIMAAAPN------PGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLS  174 (432)
Q Consensus       101 ~l~~~~~~~~~~~~~~~~~~~------~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~  174 (432)
                      ++..+.++..++.++++++++      ++.++++|+++|++.|...+....++.|++|+++|++++++.+....+|..++
T Consensus        88 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g  167 (502)
T TIGR00887        88 VYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAG  167 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998876      78899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhccC----------------------CCCchHHHHHhhHHHHHHHHHHHhhcCCCHHHHHHcCCHH-HHHHHHHH
Q 013992          175 YLINLAFTR----------------------APGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREE-EAQAILRK  231 (432)
Q Consensus       175 ~~i~~~l~~----------------------~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-~~~~~~~~  231 (432)
                      +.++..+..                      ...+||+.|.+.+++.++..+..+++||+|||+..+++.+ ++.+...+
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~  247 (502)
T TIGR00887       168 AIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSA  247 (502)
T ss_pred             HHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHH
Confidence            888765431                      0114999999988888887777888999999998877753 45555555


Q ss_pred             hCCCCchHHHHHHHHHHhHHHHHHccCccchhHHHhhccc---chhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCC
Q 013992          232 VYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTR---TVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGF  308 (432)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (432)
                      ....+..++ .++..+    .+++ ++..+.+++++++++   +.++..+... ...+.+...++....+.|.++++.+.
T Consensus       248 ~~~~~~~~~-~~~~~~----~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~y~~~~~~p~i~~~~G~  320 (502)
T TIGR00887       248 VLQVKIEAE-PDEVEK----ASTA-VEVPKASWSDFFTHFFKWRHGKHLLGTA-GSWFLLDIAFYGVNLNQKVILSAIGY  320 (502)
T ss_pred             HhccccccC-cccccc----hhcc-ccchhhhHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHccccccHHHHHHHcC
Confidence            433211111 000000    0000 111123456666542   2222222212 22222333445666678888887665


Q ss_pred             CchhH-----------HHHHHHHHHHHHHHHHHHHHHHHhhhCCchhhHhHHHHHHHHHHHHHHHHhccCCCCCccchhc
Q 013992          309 ASNRT-----------ALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVE  377 (432)
Q Consensus       309 ~~~~~-----------~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (432)
                      .+...           .........++.+++.++.++++||+|||+.+..+..+..+++.++..................
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  400 (502)
T TIGR00887       321 SPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVL  400 (502)
T ss_pred             CCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence            43211           1112333445667788999999999999999888887777766655544322111111111111


Q ss_pred             cccc-ccccccccccccccCccchhhhhccCCCCcccccccccccc
Q 013992          378 TSHF-SNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKVK  422 (432)
Q Consensus       378 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~g~~~~~~~~~~  422 (432)
                      ...+ .....+.......|.+|.   +.|++  +.|+++.......
T Consensus       401 ~~~~~~~~~~~~~~~~~~E~~p~---~~R~~--~~g~~~~~~~~~~  441 (502)
T TIGR00887       401 AQFFANFGPNATTFIVPGEVFPT---RYRST--AHGISAASGKAGA  441 (502)
T ss_pred             HHHHHhcCCCchhhhhhhccCch---hHHHH--HHHHHHHHhhhHH
Confidence            1111 111222122223566666   99999  9999887766543

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=100.00  E-value=1.6e-34  Score=278.33  Aligned_cols=377  Identities=12%  Similarity=0.005  Sum_probs=271.2

Q ss_pred             hHHHHHHHHHHhhcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHH
Q 013992           28 YVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADF  107 (432)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~  107 (432)
                      ++|..+..++++.++..+|.++++..+|.+.+|+|.+..+.   +|+.+.+.+++.++.++.|+++||+|||++++.+.+
T Consensus         3 ~~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~---~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~   79 (495)
T PRK14995          3 RQWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNEL---LWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGT   79 (495)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHH---HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            45678889999999999999999999999999999988888   999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCChhHHHHHHhhhhccccchhhhHHHHHHhcC-CcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 013992          108 LFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEAS-PAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPG  186 (432)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~  186 (432)
                      +..++++++++++|++.++++|+++|++.+...+.....+.+.+ |+++|+++++++.....+|..+||.+++++.+..+
T Consensus        80 ~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~g  159 (495)
T PRK14995         80 LFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFY  159 (495)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence            99999999999999999999999999999998888888787776 67899999999999999999999999999999887


Q ss_pred             chHHHHHhhHHHHHHHHHH-HhhcCCCHHHHHHcCCHHHHHHHH------------HHhCCCC-chHHHH----HHHHHH
Q 013992          187 TWRWMLGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAIL------------RKVYPAH-EVETEI----RDLKES  248 (432)
Q Consensus       187 ~wr~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~~~~~----~~~~~~  248 (432)
                       |||.|++....+++..++ .+++||+++..  +++.+......            +...... ......    ......
T Consensus       160 -wr~~f~i~~~~~~~~~~l~~~~l~~~~~~~--~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  236 (495)
T PRK14995        160 -WGSVFLINVPIVLVVMGLTARYVPRQAGRR--DQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLL  236 (495)
T ss_pred             -hHHHHHHHHHHHHHHHHHHHHhCCCCCCCC--CCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHH
Confidence             999999988777666555 56677764311  11111111100            0000000 000000    000000


Q ss_pred             hHHHHHHccCccchhHHHhhcccchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHH
Q 013992          249 VDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAG  328 (432)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (432)
                      ......|.+.+++....+++|++.++...+..+....     .......+.|.|++...+.++.+++....+..++..++
T Consensus       237 ~~f~~~e~~~~~p~~~~~lf~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~  311 (495)
T PRK14995        237 GLFIRTQLAASRPMIDMRLFTHRIILSGVVMAMTAMI-----TLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFS  311 (495)
T ss_pred             HHHHHHHhcCCCCCcCHHHhCCcccHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence            0011122233344455788999887654444333222     45566778899999988888999999999999999999


Q ss_pred             HHHHHHHHhhhCCchhhHhHHHHHHHHHHHHHHHHhccCCCCCccchhcccccccccccccccccccCccchhhhhccCC
Q 013992          329 SIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASS  408 (432)
Q Consensus       329 ~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  408 (432)
                      .++.|++.||+++|+.+..+..+..++..++.......+.+......++.+++.+.........   ....+|++.++. 
T Consensus       312 ~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~---~~~~~~~~~~g~-  387 (495)
T PRK14995        312 GPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSA---IMAAAPPEKAAA-  387 (495)
T ss_pred             HHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHH---HHhcCCHHhcch-
Confidence            9999999999999998888877776666555443222222222222333333333322222222   223456688888 


Q ss_pred             CCcccccccccc
Q 013992          409 PDCGFCASHSNK  420 (432)
Q Consensus       409 ~~~g~~~~~~~~  420 (432)
                       +.|+.+...+.
T Consensus       388 -~~~~~~~~~~l  398 (495)
T PRK14995        388 -AGAIETMAYEL  398 (495)
T ss_pred             -HHHHHHHHHHH
Confidence             77776655444

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=100.00  E-value=1e-33  Score=273.17  Aligned_cols=376  Identities=33%  Similarity=0.546  Sum_probs=264.5

Q ss_pred             ChhHHHHHHHHHHhhcccceeccccchhhhhhhhcc--------ccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhcccc
Q 013992           26 NPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDF--------KSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFG   97 (432)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G   97 (432)
                      .++..+.....+++.+.++++...+++..|.+.+++        +.++.+.   +++.+++.++..++++++|+++||+|
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~ig~~~~~~~~G~l~dr~G   83 (479)
T PRK10077          7 SSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLL---GFCVASALIGCIIGGALGGYCSNRFG   83 (479)
T ss_pred             chHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHH---HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            345666777777888999999999999999998887        5555566   99999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHHHHHHh------------CChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHH
Q 013992           98 RRTSILVADFLFFVGAVIMAAA------------PNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGF  165 (432)
Q Consensus        98 rr~~l~~~~~~~~~~~~~~~~~------------~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~  165 (432)
                      ||++++.+.+++.++.+.++++            +++..++++|+++|++.|...+...++++|++|+++|++++++.+.
T Consensus        84 rr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~  163 (479)
T PRK10077         84 RRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQF  163 (479)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHH
Confidence            9999999999999998887763            2256788999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcc--------CCCCchHHHHHhhHHHHHHHHHHHhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCc
Q 013992          166 LITSGQFLSYLINLAFT--------RAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHE  237 (432)
Q Consensus       166 ~~~~g~~i~~~i~~~l~--------~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (432)
                      +..+|..+++.++..+.        +..+ ||+.|++.+++.++..+..+++||+|+++.++++.++.....++.....+
T Consensus       164 ~~~~G~~~~~~~~~~~~~~~~~~~~~~~g-Wr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~  242 (479)
T PRK10077        164 AIIFGQLVVYFVNYFIARSGDASWLNTDG-WRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTL  242 (479)
T ss_pred             HHHHHHHHHHHHHHHHhccCcccccccCC-hHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChh
Confidence            99999999888776543        2334 99999998888877776678899999998888887777666666554333


Q ss_pred             hHHHHHHHHHHhHHHHHHccCccchhHHHhhcccchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHH
Q 013992          238 VETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLL  317 (432)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (432)
                      ..+..++..+..    +++++    ..+..+..  ........+....+.+..+++...++.|.+.++.+.. .......
T Consensus       243 ~~~~~~~~~~~~----~~~~~----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~-~~~~~~~  311 (479)
T PRK10077        243 ATQALQEIKHSL----DHGRK----TGGKLLMF--GVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGAS-TDIALLQ  311 (479)
T ss_pred             HHHHHHHHHHHH----HHhhh----hhhhhcch--hHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCC-CchHHHH
Confidence            222111111110    00000    00111111  1112222233334455555666777888888776544 4445566


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhCCchhhHhHHHHHHHHHHHHHHHHhccCCCCCccchh-ccccccc-cccccccccccc
Q 013992          318 SLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAV-ETSHFSN-LTCPDYSSAATA  395 (432)
Q Consensus       318 ~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~  395 (432)
                      .....+..+++.++.++++||++||+.+..+..+..++..++................+ ..+.+.. ...+.......|
T Consensus       312 ~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  391 (479)
T PRK10077        312 TIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSE  391 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHHHhHh
Confidence            66778888999999999999999999999999888888777665433222221111111 1111111 111222333345


Q ss_pred             CccchhhhhccCCCCccccccccccc
Q 013992          396 DRWDCMKCLKASSPDCGFCASHSNKV  421 (432)
Q Consensus       396 ~~~~~~~~~r~~~~~~g~~~~~~~~~  421 (432)
                      .+   |++.|++  +.|++++..+..
T Consensus       392 ~~---p~~~r~~--~~g~~~~~~~~g  412 (479)
T PRK10077        392 IF---PNAIRGK--ALAIAVAAQWIA  412 (479)
T ss_pred             hC---ChhHHHH--HHHHHHHHHHHH
Confidence            54   4599999  999876654443

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=100.00  E-value=3.7e-34  Score=271.71  Aligned_cols=348  Identities=18%  Similarity=0.161  Sum_probs=238.4

Q ss_pred             CChhHHHHHHHHHHhhcccceeccccchhhhhhhhccc---cchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHH
Q 013992           25 KNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFK---SVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTS  101 (432)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~  101 (432)
                      ++++++..+...+++.+++++|...++...|.+.++++   .+..+..+.+.+.+...++..++++++|+++||+|||++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~   95 (432)
T PRK10406         16 DTRRRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKS   95 (432)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHH
Confidence            34456666777778889999999999999999999985   333333222444455566666999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhCChh--------HHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHH
Q 013992          102 ILVADFLFFVGAVIMAAAPNPG--------ALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFL  173 (432)
Q Consensus       102 l~~~~~~~~~~~~~~~~~~~~~--------~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i  173 (432)
                      +..+.++++++++++++++++.        .+++.|+++|++.|..++...+++.|++|+++|+++.++...+...|..+
T Consensus        96 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~  175 (432)
T PRK10406         96 MLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLL  175 (432)
T ss_pred             HHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHH
Confidence            9999999999999999999875        58899999999999999999999999999999999999988888888888


Q ss_pred             HHHHHhhccC--------CCCchHHHHHhhHHHHHHHHHHHhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHH
Q 013992          174 SYLINLAFTR--------APGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDL  245 (432)
Q Consensus       174 ~~~i~~~l~~--------~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (432)
                      ++.+...+..        ..+ ||+.|++.+++.++.......+||+|++..+                           
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~g-Wr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~---------------------------  227 (432)
T PRK10406        176 ALLVVVVLQQTLEDAELREWG-WRIPFALGAVLAVVALWLRRQLDETSQQETR---------------------------  227 (432)
T ss_pred             HHHHHHHHHHhCCHHHHhccc-hHHHHHHHHHHHHHHHHHHhcCCCCchHHHh---------------------------
Confidence            8776554431        344 9999999888777665555567777542100                           


Q ss_pred             HHHhHHHHHHccCccchhHHHhhcccchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHH
Q 013992          246 KESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLN  325 (432)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (432)
                              ++   ++..+.++++|+++.+...+...    +.....++....|.|.|+++..+.+..+.+.......+..
T Consensus       228 --------~~---~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~  292 (432)
T PRK10406        228 --------AL---KEAGSLKGLWRNRRAFIMVLGFT----AAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVF  292 (432)
T ss_pred             --------hh---cccccHHHHHhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence                    00   00123566777766654332211    1212345667788999987765565666777777667777


Q ss_pred             HHHHHHHHHHHhhhCCchhhHhHHHHHHHHHHHHHHHHhccCCCCCccchhccc-ccccccccccccccccCccchhhhh
Q 013992          326 AAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETS-HFSNLTCPDYSSAATADRWDCMKCL  404 (432)
Q Consensus       326 ~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  404 (432)
                      .++.++.|+++||++||+.+..+..+..+....+.............+..+... ..............+|.+|.   +.
T Consensus       293 ~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~---~~  369 (432)
T PRK10406        293 MLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPA---QV  369 (432)
T ss_pred             HHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---Cc
Confidence            888889999999999998877665543333222221111111111111111111 11111111222333555555   99


Q ss_pred             ccCCCCcccccccccc
Q 013992          405 KASSPDCGFCASHSNK  420 (432)
Q Consensus       405 r~~~~~~g~~~~~~~~  420 (432)
                      |++  +.|++++..+.
T Consensus       370 r~t--~~g~~~~~g~~  383 (432)
T PRK10406        370 RAL--GVGLSYAVANA  383 (432)
T ss_pred             cch--hhhHHHHHHHH
Confidence            999  99999876554

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=100.00  E-value=2.4e-33  Score=271.00  Aligned_cols=383  Identities=39%  Similarity=0.576  Sum_probs=287.5

Q ss_pred             hhHHHHHHHHHHhhccccee--ccccchhhhhhhhccccchhhh----HHHHHHHHHHHHHHHHHHHhhhhhhccccchH
Q 013992           27 PYVLRLAFSAGIGGLLFGYD--TGVISGALLYIRDDFKSVDRKT----LLQESIVSMAVAGAIIGAAIGGWMNDRFGRRT  100 (432)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~  100 (432)
                      +..........++.+..+++  ....++....+.++........    ...+++.+.+.++..+++++.|+++|++|||+
T Consensus        41 ~~~~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~  120 (513)
T KOG0254|consen   41 PFVILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKK  120 (513)
T ss_pred             eehHHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            33444444555555666665  5666777777766543222221    23389999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhh
Q 013992          101 SILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLA  180 (432)
Q Consensus       101 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~  180 (432)
                      .++.+.+.+.++.+++++++|+++++++|+++|+|.|........+++|..|++.||...+..+....+|..++..++..
T Consensus       121 ~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~  200 (513)
T KOG0254|consen  121 TLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYG  200 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999776666


Q ss_pred             ccCCCCchHHHHHhhHHHHHHHHHHHhhcCCCHHHHHHcCCHHHHHHHHHHhCC--CCchHHHHHHHHHHhHHHHHHccC
Q 013992          181 FTRAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYP--AHEVETEIRDLKESVDKEIEEEGS  258 (432)
Q Consensus       181 l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  258 (432)
                      ..+...+||..+.+..+++++..+..+++||+|+|+.++++.+++...+.++.+  ..+.+.+.+..+.  ....+....
T Consensus       201 ~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~--~~~~~~~~~  278 (513)
T KOG0254|consen  201 TSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKI--KLLVEAEVA  278 (513)
T ss_pred             hccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHH--HHHHhhhcc
Confidence            544312499999999999998888888899999999999999999999999887  3444444433331  111111111


Q ss_pred             ccchhHHHhhcccchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013992          259 SEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDR  338 (432)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~  338 (432)
                      +.+....++++ |..+++.+.++.+..++++.++....+|.+.+++..+..++.  .......++..+++.++..++.||
T Consensus       279 ~~~~~~~~l~~-~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~--~~~~~~~~~v~~~~t~~~~~lvd~  355 (513)
T KOG0254|consen  279 EGKASWGELFS-PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT--FLASIILGVVNFLGTLVATYLVDR  355 (513)
T ss_pred             cccccHHHhcC-cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11113445555 778888888899999999999999999999999998887654  455666677788899999999999


Q ss_pred             hCCchhhHhHHHHHHHHHHHHHHHHhccCCCC------Cccchhcc----cccccccccccccccccCccchhhhhccCC
Q 013992          339 TGRKKLLVISLSGVILSLGVLSAVFHETTSHS------PMVSAVET----SHFSNLTCPDYSSAATADRWDCMKCLKASS  408 (432)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  408 (432)
                      +|||+.++.+...+.++++++.........+.      ..+.....    ..+.....+.--...+|.+|.   +.|+. 
T Consensus       356 ~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~---~~r~~-  431 (513)
T KOG0254|consen  356 FGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPL---RLRSK-  431 (513)
T ss_pred             hccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcH---hHHhh-
Confidence            99999999999999999998887766543321      11111111    111111111111244677777   99999 


Q ss_pred             CCccccccccc
Q 013992          409 PDCGFCASHSN  419 (432)
Q Consensus       409 ~~~g~~~~~~~  419 (432)
                       +.+++.+.+.
T Consensus       432 -~~s~~~~~n~  441 (513)
T KOG0254|consen  432 -GASLAVAVNW  441 (513)
T ss_pred             -hHHHHHHHHH
Confidence             8887765543

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=100.00  E-value=1.8e-33  Score=271.59  Aligned_cols=386  Identities=37%  Similarity=0.568  Sum_probs=263.9

Q ss_pred             CChhHHHHHHHHHHhhcccceeccccchhhhhhhhccccc--------hhhhHHHHHHHHHHHHHHHHHHHhhhhhhccc
Q 013992           25 KNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSV--------DRKTLLQESIVSMAVAGAIIGAAIGGWMNDRF   96 (432)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--------~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~   96 (432)
                      .+++.+....++.++.++..++...+++.+|.+..+++.+        ..+.   +++.+++.++..+++++.|+++||+
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~g~l~d~~   98 (481)
T TIGR00879        22 TYWKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLW---GLVVSIFLVGGFIGALFAGWLSDRF   98 (481)
T ss_pred             ccHHHHHHHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHH---HHHHHHHHHHHHHHHHHhhHhhhhh
Confidence            3344555555666677888899999999999998888776        4555   9999999999999999999999999


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhC---ChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHH
Q 013992           97 GRRTSILVADFLFFVGAVIMAAAP---NPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFL  173 (432)
Q Consensus        97 Grr~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i  173 (432)
                      |||++++.+.++..++.+++.+..   +++.+++.|+++|++.+...+....++.|++|+++|++++++.+.+..+|..+
T Consensus        99 grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~  178 (481)
T TIGR00879        99 GRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILV  178 (481)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHH
Confidence            999999999999999999986644   45589999999999999999999999999999999999999999999999999


Q ss_pred             HHHHH---hhccCCCCchHHHHHhhHHHHHHHHHHHhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhH
Q 013992          174 SYLIN---LAFTRAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVD  250 (432)
Q Consensus       174 ~~~i~---~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (432)
                      ++.++   ....+..+ ||+.|++.++..++..+..+++||+|++...+++.++..+..++.....+.+...........
T Consensus       179 ~~~~~~~~~~~~~~~~-w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (481)
T TIGR00879       179 AYGFGSGKVSLNNTLG-WRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELID  257 (481)
T ss_pred             HHHHHHHhhcCCCCcc-HHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Confidence            99999   66655555 999999977777776666788899998877777766655554443332221111111001000


Q ss_pred             HHHHHccCccchhHHHhhcccc-hhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHH
Q 013992          251 KEIEEEGSSEKINLVKLLKTRT-VRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGS  329 (432)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (432)
                      ...+.+.+..+....+.++..+ .....+.......+..........++.|.+.++.+.+. ...+.......++.+++.
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~  336 (481)
T TIGR00879       258 IKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVST-DHAFLVSIIVGAVNFAFT  336 (481)
T ss_pred             HHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHHH
Confidence            1111111111111233333211 22233333444444444455666778888888776554 667788888888899999


Q ss_pred             HHHHHHHhhhCCchhhHhHHHHHHHHHHHHHHHHhccCC-------CCCc-cchhcccccccccccccccccccCccchh
Q 013992          330 IVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTS-------HSPM-VSAVETSHFSNLTCPDYSSAATADRWDCM  401 (432)
Q Consensus       330 ~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (432)
                      ++.+++.||++||+.+..+..+..+++.++.........       .... ...+..+.+.....+.......+..   |
T Consensus       337 ~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---p  413 (481)
T TIGR00879       337 FVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIF---P  413 (481)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccC---C
Confidence            999999999999999988877777766665532211111       1111 1111111122122222222324444   4


Q ss_pred             hhhccCCCCcccccccccc
Q 013992          402 KCLKASSPDCGFCASHSNK  420 (432)
Q Consensus       402 ~~~r~~~~~~g~~~~~~~~  420 (432)
                      ++.|++  +.|+.....+.
T Consensus       414 ~~~~~~--~~~~~~~~~~l  430 (481)
T TIGR00879       414 LSLRPK--GISIAVAANWL  430 (481)
T ss_pred             hHHHHH--HHHHHHHHHHH
Confidence            588999  88887665554

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=100.00  E-value=3.9e-34  Score=275.51  Aligned_cols=356  Identities=16%  Similarity=0.164  Sum_probs=239.4

Q ss_pred             HHHHHHHHHhhcccceeccccchhhhhhhhccccchhhh--HHHHH-HHHHHHHHHHHHHHhhhhhhccccchHHHHHHH
Q 013992           30 LRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKT--LLQES-IVSMAVAGAIIGAAIGGWMNDRFGRRTSILVAD  106 (432)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~-~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~  106 (432)
                      ++.+...+++.+++++|...++...|.+.++++.+.++.  ....+ ..++.++++.+++++.|+++||+|||+++..+.
T Consensus        15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~   94 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITI   94 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            345666778889999999999999999999986443221  11122 257888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCChhH--------HHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHH
Q 013992          107 FLFFVGAVIMAAAPNPGA--------LITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLIN  178 (432)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~--------~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~  178 (432)
                      ++++++++++++++|+++        ++++|+++|++.|..++...+++.|++|+++|+++.++...+..+|..+++.+.
T Consensus        95 ~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~  174 (490)
T PRK10642         95 VIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVV  174 (490)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999875        889999999999999999999999999999999999999988888888887665


Q ss_pred             hhcc--------CCCCchHHHHHhhHHHHHHHHHHHhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhH
Q 013992          179 LAFT--------RAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVD  250 (432)
Q Consensus       179 ~~l~--------~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (432)
                      ..+.        ...+ ||+.|++.+++.++..++...+||+|+|..++++.++..                        
T Consensus       175 ~~~~~~~~~~~~~~~g-WR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~------------------------  229 (490)
T PRK10642        175 VLISTIVGEANFLDWG-WRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGD------------------------  229 (490)
T ss_pred             HHHHHhcCHHHhcCcc-HHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhc------------------------
Confidence            4432        1345 999999987766666666677899988654322111100                        


Q ss_pred             HHHHHccCccchhHHHhhcccchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHH
Q 013992          251 KEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSI  330 (432)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (432)
                        .+...+.++.+.++++++.  ++....... ..+.....++....|.|.|+++..+.+............++.+++.+
T Consensus       230 --~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~  304 (490)
T PRK10642        230 --REGLQDGPKVSFKEIATKH--WRSLLTCIG-LVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQP  304 (490)
T ss_pred             --cccccccccCCHHHHHHHh--HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence              0000001122344555431  222222222 12223345667778999999776555566666677777788899999


Q ss_pred             HHHHHHhhhCCchhhHhHHHHHHHHHHHHHHHHhccCCCCCccchhcccccccccccccccccccCccchhhhhccCCCC
Q 013992          331 VSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPD  410 (432)
Q Consensus       331 ~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  410 (432)
                      +.|+++||+|||+.+..+.....+....+................++.+++............++.+   |++.|++  +
T Consensus       305 ~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~---p~~~Rg~--~  379 (490)
T PRK10642        305 VMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMF---PTHIRYS--A  379 (490)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCccchH--H
Confidence            9999999999999887776544433222222111111111111112222221122222233334544   4599999  8


Q ss_pred             cccccccccc
Q 013992          411 CGFCASHSNK  420 (432)
Q Consensus       411 ~g~~~~~~~~  420 (432)
                      .|+..+....
T Consensus       380 ~g~~~~~~~~  389 (490)
T PRK10642        380 LAAAFNISVL  389 (490)
T ss_pred             HHHHHHHHHH
Confidence            8876655443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=100.00  E-value=1.3e-33  Score=265.88  Aligned_cols=368  Identities=16%  Similarity=0.104  Sum_probs=251.4

Q ss_pred             hhHHHHHHHHHHhhcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHH
Q 013992           27 PYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVAD  106 (432)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~  106 (432)
                      +.+|+....+++..+++++|+...+...|.+.+|+|.++.+.   +++.+++.+++.+++++.|+++||+|||+++..+.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~---g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~   80 (412)
T TIGR02332         4 KLFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMF---GLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIM   80 (412)
T ss_pred             eehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHH---HHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHH
Confidence            346778888888889999999999999999999999999888   99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccC---
Q 013992          107 FLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTR---  183 (432)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~---  183 (432)
                      ++++++++++++++|++.+++.|+++|++.+...+....++.|++|+++|++++++++.+..+|..+++.+++++.+   
T Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  160 (412)
T TIGR02332        81 VLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDG  160 (412)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988764   


Q ss_pred             ---CCCchHHHHHhhHHHHHHHHHH-HhhcCCCHHHHHHcCCHHHHHHHHHHhCCCC-chHHHHHHHHHHhHHHHHHccC
Q 013992          184 ---APGTWRWMLGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAH-EVETEIRDLKESVDKEIEEEGS  258 (432)
Q Consensus       184 ---~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  258 (432)
                         ..+ ||+.|++.+++.++..++ ++++||+|+... .-+.++.+...+...... +.++        .+...++.+.
T Consensus       161 ~~~~~g-wr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~-~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~  230 (412)
T TIGR02332       161 LMALKG-WQWLFLLEGFPSVILGVMTWFWLDDSPDKAK-WLDEEDKKALKEMIDNDQLTLEQ--------PEGAFAHAAM  230 (412)
T ss_pred             CCCccc-hhHHHHHHHHHHHHHHHHHhhccCCCcccCC-CCCHHHHHHHHHHHHhccccccc--------cccccccccc
Confidence               234 999999988877665544 667788874100 000111111111100000 0000        0000000000


Q ss_pred             ccchhHHHhhcccchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcC-CCchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013992          259 SEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSG-FASNRTALLLSLVTSGLNAAGSIVSIYFID  337 (432)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d  337 (432)
                      .....+++++ ++.++...     ..+++....++.+..|.|.++++.+ +.+...++.......++.+++.++.|+++|
T Consensus       231 ~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~d  304 (412)
T TIGR02332       231 PQRSMLREIF-TPAIMLYT-----LAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSD  304 (412)
T ss_pred             cHHHHHHHhc-ChHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhc
Confidence            0011223333 45554322     2333444467778889999998853 455677788888899999999999999999


Q ss_pred             hhCCchhh-HhHHHHHHHHHHHHHHHHhccCCCCCccchhccccccc-ccccccccccccCccchhhhhccCCCCccccc
Q 013992          338 RTGRKKLL-VISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSN-LTCPDYSSAATADRWDCMKCLKASSPDCGFCA  415 (432)
Q Consensus       338 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~g~~~  415 (432)
                      |+++|+.. ........++. ++...  .... ......+....++. ...+.+.....+   ..|++.|++  +.|+.+
T Consensus       305 r~~~r~~~~~~~~~~~~~~~-~~~~~--~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~--a~g~~~  375 (412)
T TIGR02332       305 RLKERKHHTALPYLFAAAGW-LLASA--TDHN-LIQLLGIIMASMGSFSAMAIFWTTPDQ---SISLQARAI--AIAVIN  375 (412)
T ss_pred             ccCccHHHHHHHHHHHHHHH-HHHHh--cCCH-HHHHHHHHHHHHHhhhhhhHHHhhccc---ccchHHHHH--HHHHHH
Confidence            99977753 33333333322 22211  1111 11111111111111 111111122123   345589999  999988


Q ss_pred             ccccccc
Q 013992          416 SHSNKVK  422 (432)
Q Consensus       416 ~~~~~~~  422 (432)
                      ...+...
T Consensus       376 ~~~~~g~  382 (412)
T TIGR02332       376 ATGNIGS  382 (412)
T ss_pred             Hhhhhhh
Confidence            8777643

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=5.1e-34  Score=255.13  Aligned_cols=286  Identities=21%  Similarity=0.237  Sum_probs=249.4

Q ss_pred             hhHHHHHHHHHHhhcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHH
Q 013992           27 PYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVAD  106 (432)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~  106 (432)
                      +..+..++.+.++.|..+.+...+...+|++.+|+|.+..+.   |++.+.|.+++.++.|+...+.||+.||++++..+
T Consensus         9 ~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~a---G~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l   85 (394)
T COG2814           9 KPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAA---GQLITAYALGVALGAPLLALLTGRLERRRLLLGLL   85 (394)
T ss_pred             ccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHH
Confidence            334556677777888889999999999999999999999999   99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 013992          107 FLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPG  186 (432)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~  186 (432)
                      .++.++++++++++||+.++++|++.|+..|..++...++..+..|+++|++++++...+.++...+|.+++.++.+..|
T Consensus        86 ~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~G  165 (394)
T COG2814          86 ALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFG  165 (394)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             chHHHHHhhHHHHHHHHHH-HhhcC-CCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhH
Q 013992          187 TWRWMLGVAGIPALLQFIL-MLLLP-ESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINL  264 (432)
Q Consensus       187 ~wr~~f~~~~~~~~~~~~~-~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (432)
                       ||+.|+..+.++++..+. +..+| .++                                        +++++.+..+.
T Consensus       166 -WR~~F~~ia~l~ll~~~~~~~~lP~~~~----------------------------------------~~~~~~~~~~~  204 (394)
T COG2814         166 -WRATFLAIAVLALLALLLLWKLLPPSEI----------------------------------------SGSLPGPLRTL  204 (394)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHhCCCccC----------------------------------------CCCCCcchhHH
Confidence             999999999988888777 77788 110                                        11222233456


Q ss_pred             HHhhcccchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchh
Q 013992          265 VKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKL  344 (432)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~  344 (432)
                      .+.+|+|+.+...+...+...     +.+....|...++++..+.+.....+....++++.++|+.++|++.|| +.|+.
T Consensus       205 ~~~l~~p~v~~~l~~t~l~~~-----g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~  278 (394)
T COG2814         205 LRLLRRPGVLLGLLATFLFMT-----GHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRA  278 (394)
T ss_pred             HHHhcCchHHHHHHHHHHHHc-----chhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhH
Confidence            789999999886665544433     777888888888888888788899999999999999999999999999 88888


Q ss_pred             hHhHHHHHHHHHHHHHHH
Q 013992          345 LVISLSGVILSLGVLSAV  362 (432)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~  362 (432)
                      +.....+..+....+.+.
T Consensus       279 l~~~~~l~a~~~l~l~~~  296 (394)
T COG2814         279 LIAALLLLALALLALTFT  296 (394)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            888777777766665554

>TIGR00898 2A0119 cation transport protein

Probab=100.00  E-value=2.9e-33  Score=271.61  Aligned_cols=349  Identities=21%  Similarity=0.288  Sum_probs=250.1

Q ss_pred             hhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHhCChhHHHHHHhh
Q 013992           52 GALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVF  131 (432)
Q Consensus        52 ~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l  131 (432)
                      +..|.+.+|+|+++++.++.++..+++.++..++.++.|+++||+|||++++.+.++.+++.++.++++|++.+++.|++
T Consensus       110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l  189 (505)
T TIGR00898       110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLL  189 (505)
T ss_pred             cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            56788999999996666666999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHHHHHHHHHhhcCC
Q 013992          132 VGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLLLPE  211 (432)
Q Consensus       132 ~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e  211 (432)
                      .|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++..+.    +||+.|++.+++.++..+..+++||
T Consensus       190 ~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~----~wr~~~~~~~i~~~~~~~~~~~~~e  265 (505)
T TIGR00898       190 VGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP----DWRWLQLAVSLPTFLFFLLSWFVPE  265 (505)
T ss_pred             HHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            999999999999999999999999999999999999999999999887664    4999999999888887777788999


Q ss_pred             CHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhHHHhhcccchhHHHHHHHHHHHHhhhcc
Q 013992          212 SPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVG  291 (432)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (432)
                      +|+|+..+++.+++.+..++..+.+......+......++  ++.++.++...++++++|+++...+.....++.     
T Consensus       266 sp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-----  338 (505)
T TIGR00898       266 SPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEK--DLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFT-----  338 (505)
T ss_pred             ChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhh--hhhhccCCCcHHHHhCChHHHHHHHHHHHHHHH-----
Confidence            9999999999888877776654333221111111110011  111111234678899999888766654443331     


Q ss_pred             hHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhhHhHHHHHHHHHHHHHHHHhccCCCCC
Q 013992          292 INTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSP  371 (432)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (432)
                      .....+..+.+....+.+    ........++..+++.++.+++.||+|||+.+.++..+.+++++++...... ..+..
T Consensus       339 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~-~~~~~  413 (505)
T TIGR00898       339 TAFSYYGLVLDLGNLGGN----IYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVD-LYFLR  413 (505)
T ss_pred             HHHHHHHHhccccccCCC----hHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCC-chHHH
Confidence            111112222233333322    2344445667788999999999999999999988887777776655543211 11111


Q ss_pred             ccchhcccccccccccccccccccCccchhhhhccCCCCccccccccccc
Q 013992          372 MVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKV  421 (432)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~g~~~~~~~~~  421 (432)
                      ....++.+++.............|.+|+   +.|++  +.|+++......
T Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~---~~r~~--~~g~~~~~~~ig  458 (505)
T TIGR00898       414 TALAVLGKFGITSAFQMVYLYTAELYPT---VVRNL--GVGVCSTMARVG  458 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccccH---HHHhh--hHhHHHHHHHHH
Confidence            1112222222222222222333555555   99999  999988776544

>TIGR00891 2A0112 putative sialic acid transporter

Probab=100.00  E-value=1.3e-32  Score=259.86  Aligned_cols=370  Identities=17%  Similarity=0.155  Sum_probs=253.5

Q ss_pred             CChhHHHHHHHHHHhhcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHH
Q 013992           25 KNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILV  104 (432)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~  104 (432)
                      .++++|+.+..++++.+.++++....++..|.+.+++|.++.+.   +++.+.+.++..+++++.|.++||+|||++++.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~---g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~   82 (405)
T TIGR00891         6 LTRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDA---ASLISAALISRWFGALMFGLWGDRYGRRLPMVT   82 (405)
T ss_pred             CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhH---HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            45677888888999999999999999999999999999999888   999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCC
Q 013992          105 ADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRA  184 (432)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~  184 (432)
                      +.++.+++.++++++++++.+++.|++.|++.+...+...+++.|++|+++|+++.++...+..+|..+++.+++.+.+.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~  162 (405)
T TIGR00891        83 SIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPV  162 (405)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999888765


Q ss_pred             CC-chHHHHHhhHHHHHHHHHHHhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchh
Q 013992          185 PG-TWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKIN  263 (432)
Q Consensus       185 ~~-~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (432)
                      .+ +||+.|++.++..++..+....+||++++..++++.++..+..++..+...             .. ++..++....
T Consensus       163 ~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~-~~~~~~~~~~  228 (405)
T TIGR00891       163 WGDGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEH-------------RI-ANIVMTLAAA  228 (405)
T ss_pred             cCccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccch-------------hh-hhhhhhhhHH
Confidence            42 499999987776666666666788886544322221111111111000000             00 0000000000


Q ss_pred             HHHhhcccchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCch
Q 013992          264 LVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKK  343 (432)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~  343 (432)
                      .++.  .++.+........ ..............+.|.|+.+..+.+..+.+.......++.+++.++.+++.||++||+
T Consensus       229 ~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~  305 (405)
T TIGR00891       229 MVQS--AGKRWPTFVYLVV-LVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRK  305 (405)
T ss_pred             hhhh--hhhhhHHHHHHHH-HHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchh
Confidence            1111  1111111111111 111111223445567788887666666778888888889999999999999999999999


Q ss_pred             hhHhHHHHHHHHHHHHHHHHhccCCCCCccchhcccccccccccccccccccCccchhhhhccCCCCccccccccccc
Q 013992          344 LLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKV  421 (432)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~g~~~~~~~~~  421 (432)
                      .+.++.....+....+...  ..+.+...+.....+.+.............+   ..|++.|++  ..|+.+...+..
T Consensus       306 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~g~~~~~~~~g  376 (405)
T TIGR00891       306 AYVCSLLAGQLLIIPVFAI--GANVAVLGLGLFFQQMLVQGIWGILPKHLGE---YFPTDQRAA--GLGFTYQLGNLG  376 (405)
T ss_pred             hhHHHHHHHHHHHHHHHHh--CCchHHHHHHHHHHHHHHccchhhHHHHHhh---hCCcchhHH--HhhHHHHHHHHH
Confidence            8887765543322222111  2222221121122222222222222223334   445589999  888876655443

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=100.00  E-value=3.8e-34  Score=274.22  Aligned_cols=362  Identities=14%  Similarity=0.001  Sum_probs=249.7

Q ss_pred             hhHHHHHHHHHHhhcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHH
Q 013992           27 PYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVAD  106 (432)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~  106 (432)
                      +..+..+..++++++..+.++..+++..|.+.+|+|.++.+.   +++.+.+.+++.+++++.|+++||+|||+++..+.
T Consensus        25 ~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~---g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~  101 (467)
T PRK09556         25 KPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTEL---GMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLL  101 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHH
Confidence            445667778888888899999999999999999999998888   99999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHH-----hCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhc
Q 013992          107 FLFFVGAVIMAA-----APNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAF  181 (432)
Q Consensus       107 ~~~~~~~~~~~~-----~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l  181 (432)
                      ++++++.++.+.     ++|++.+++.|+++|++.+...+...+++.||+|+++|+++++++..+..+|.++++.+..++
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~  181 (467)
T PRK09556        102 ILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWG  181 (467)
T ss_pred             HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHH
Confidence            888887776655     689999999999999999999999999999999999999999999999999999999988766


Q ss_pred             cCCC--CchHHHHHhhHHHHHHHHHH-HhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccC
Q 013992          182 TRAP--GTWRWMLGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGS  258 (432)
Q Consensus       182 ~~~~--~~wr~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (432)
                      .+..  ++||..|.+.+++.++..++ +++.+|+|+..... +.++   ..   ...  ...         +++.+++++
T Consensus       182 ~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~-~~~~---~~---~~~--~~~---------~~~~~~~~~  243 (467)
T PRK09556        182 ANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWG-KAEE---IF---GEP--ISE---------EDKETESTD  243 (467)
T ss_pred             HHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCC-Chhh---cc---cCc--cch---------hhhcccccc
Confidence            5532  24999998888777666555 45556665421100 1111   00   000  000         000000000


Q ss_pred             cc-ch-hHHHhhcccchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013992          259 SE-KI-NLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFI  336 (432)
Q Consensus       259 ~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~  336 (432)
                      .. .. ..++.++++.+|...+..+     +.+..+.....|.|.|+++..+.+..+++.......++.+++.++.|+++
T Consensus       244 ~~~~~~~~~~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~ls  318 (467)
T PRK09556        244 MTKWQIFVEYVLKNPVIWLLCFANI-----FLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLS  318 (467)
T ss_pred             CcHHHHHHHHHHcChHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            00 11 1223678888776444332     22334566788999999887777778888888888889999999999999


Q ss_pred             hhhCCchhhHhHHHHHHHHHHHHHHHHhccCCCCCccchhcccccccccccccccccccCccchhhhhccCCCCcccccc
Q 013992          337 DRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCAS  416 (432)
Q Consensus       337 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~g~~~~  416 (432)
                      ||+++|+.......+..++..++... ...+.....+..+..+.+.............   +..|++.|++  +.|+.+.
T Consensus       319 Dr~g~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~---~~~p~~~~g~--a~gi~~~  392 (467)
T PRK09556        319 DLANGRRALVACIALALIIFTLGVYQ-HATSEYMYLASLFALGFLVFGPQLLIGVAAV---GFVPKKAIGV--ANGIKGT  392 (467)
T ss_pred             HHHCCCchHHHHHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHHHHhhHHHHHHHHHH---hhcchhhHHH--HHHHHHH
Confidence            99999887765544443332222221 1112111112222222211111111111222   4555699999  9998766


Q ss_pred             cccc
Q 013992          417 HSNK  420 (432)
Q Consensus       417 ~~~~  420 (432)
                      ..+.
T Consensus       393 ~g~l  396 (467)
T PRK09556        393 FAYL  396 (467)
T ss_pred             HHHH
Confidence            6554

>PRK12307 putative sialic acid transporter; Provisional

Probab=100.00  E-value=2e-32  Score=260.16  Aligned_cols=355  Identities=19%  Similarity=0.158  Sum_probs=252.8

Q ss_pred             ChhHHHHHHHHHHhhcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHH
Q 013992           26 NPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVA  105 (432)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~  105 (432)
                      ++++++.+..+.++.+.++++.....+..|.+.+++|.++.+.   +++.+++.++..+++++.|+++||+|||+++..+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~---~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~   89 (426)
T PRK12307         13 TRPQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEG---AFLATAAFIGRPFGGALFGLLADKFGRKPLMMWS   89 (426)
T ss_pred             CHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHH
Confidence            3566777778888888999999999999999999999998888   9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 013992          106 DFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAP  185 (432)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~  185 (432)
                      .++.+++.++++++++++.++++|+++|++.+...+....++.|++|+++|+++.++...+..+|..+++.+.+.+.+..
T Consensus        90 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~  169 (426)
T PRK12307         90 IVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAY  169 (426)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999888877


Q ss_pred             CchHHHHHhhHHHHHHHHHHHhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhHH
Q 013992          186 GTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLV  265 (432)
Q Consensus       186 ~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (432)
                      + ||+.|++.++..++........||++++..++.+.+            .+              +.+...+......+
T Consensus       170 ~-w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~------------~~--------------~~~~~~~~~~~~~~  222 (426)
T PRK12307        170 G-WRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLSGK------------GK--------------HSQSAWSVFSLSMK  222 (426)
T ss_pred             C-HHHHHHHHHHHHHHHHHHHHHCCCChHHHHhhhhcc------------cc--------------ccccchhhhhHHHH
Confidence            7 999998865544433333333566644321110000            00              00000001122456


Q ss_pred             HhhcccchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhh
Q 013992          266 KLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLL  345 (432)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~  345 (432)
                      +.++++.++........  .+..+...+.+..+.|.|+++.+ .++...+.......++.++++++.|++.||++||+.+
T Consensus       223 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~  299 (426)
T PRK12307        223 GLFNRAQFPLTLCVFIV--LFSIFGANWPIFGLLPTYLAGEG-FDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTF  299 (426)
T ss_pred             HHHhhchHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence            77888877654432221  12222233445667888988764 4466677777788889999999999999999999988


Q ss_pred             HhHHHHHHHHHHHHHHHHhccCCCCCccchhcccc--cccccccccccccccCccchhhhhccCCCCccccccccccc
Q 013992          346 VISLSGVILSLGVLSAVFHETTSHSPMVSAVETSH--FSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKV  421 (432)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~g~~~~~~~~~  421 (432)
                      ..+..+..+....+.... . ... ..+..+..+.  ..............   +..|++.|++  +.|++.+..+..
T Consensus       300 ~~~~~~~~~~~~~~~~~~-~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~p~~~~g~--~~g~~~~~~~~~  369 (426)
T PRK12307        300 SIGLLMSFLFIFPLFRIP-Q-DNY-LLLGACLFGLMATNVGVGGLVPKFLY---DYFPLEVRGL--GTGLIYNLAATS  369 (426)
T ss_pred             HHHHHHHHHHHHHHHHHc-c-ccH-HHHHHHHHHHHHhcccHhHHHHHHHH---HhCcHHHHhh--hhhHHHHHHhHH
Confidence            877766655544333221 1 111 1111111111  11111111122223   3455599999  999876665543

>PRK11663 regulatory protein UhpC; Provisional

Probab=100.00  E-value=1e-32  Score=261.92  Aligned_cols=285  Identities=14%  Similarity=0.044  Sum_probs=218.7

Q ss_pred             hhHHHHHHHHHHhhcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHH
Q 013992           27 PYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVAD  106 (432)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~  106 (432)
                      ++++......++..+..+++...++..+|.+.+++|.+..+.   +++.+.+.+++.+++++.|+++||+|||+++.++.
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~---g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~   95 (434)
T PRK11663         19 YWRRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDI---GLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGL   95 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHH
Confidence            455566666777778888888888999999999999998888   99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 013992          107 FLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPG  186 (432)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~  186 (432)
                      ++.+++.+++++++|++.+++.|++.|++.|...+...+++.|++|+++|++++++.+.+..+|..+++.+.+++.+..+
T Consensus        96 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~g  175 (434)
T PRK11663         96 IATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYG  175 (434)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            99999999999999999999999999999998899999999999999999999999999999999999999999988777


Q ss_pred             chHHHHHhhHHHHHHHHH-HHhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchh-H
Q 013992          187 TWRWMLGVAGIPALLQFI-LMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKIN-L  264 (432)
Q Consensus       187 ~wr~~f~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  264 (432)
                       ||+.|++.++..++..+ ..+++||+|++...+...++.++.                 .+. .++ +++++.+..+ .
T Consensus       176 -w~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-----------------~~~-~~~-~~~~~~~~~~~~  235 (434)
T PRK11663        176 -WRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDA-----------------LEL-AQQ-QEGAGLSRKEIL  235 (434)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccc-----------------ccc-chh-ccccCCChhhhH
Confidence             99999998877665544 356678876532111100000000                 000 000 0000001111 1


Q ss_pred             -HHhhcccchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013992          265 -VKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRT  339 (432)
Q Consensus       265 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~  339 (432)
                       ...++++.++...+..     +........+..|.|.|+++..+.+..+++.......++.++++++.|+++||+
T Consensus       236 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~  306 (434)
T PRK11663        236 TKYVLLNPYIWLLSFSY-----VLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKL  306 (434)
T ss_pred             HHHHhcChHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHh
Confidence             1256667666533322     222224556777899999766666677888888888899999999999999998

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=100.00  E-value=8.2e-33  Score=267.42  Aligned_cols=374  Identities=17%  Similarity=0.155  Sum_probs=266.8

Q ss_pred             HHHHHHHhhcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHH
Q 013992           32 LAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFV  111 (432)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~  111 (432)
                      .+..++++.++..++....++.+|.+.+++|.+..+.   +++.+.+.++..++.++.|+++||+|||++++.+.++..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~   79 (485)
T TIGR00711         3 LTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQV---QWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTL   79 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhh---hHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHH
Confidence            4556677788889999999999999999999988888   9999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHH
Q 013992          112 GAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWM  191 (432)
Q Consensus       112 ~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~  191 (432)
                      +.+++++++|++.+++.|+++|++.+...+...+++.|++|+++|+++++++.....+|..+++.+++++.+..+ ||+.
T Consensus        80 ~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-w~~~  158 (485)
T TIGR00711        80 GSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYH-WRWI  158 (485)
T ss_pred             HHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcC-ceeh
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998877 9999


Q ss_pred             HHhhHHHHHHHHHH-HhhcCCCHHHHHHcCCHHHHHHHH------------HHhCCCC-chHHHHH-H----HHHHhHHH
Q 013992          192 LGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAIL------------RKVYPAH-EVETEIR-D----LKESVDKE  252 (432)
Q Consensus       192 f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~~~~~~-~----~~~~~~~~  252 (432)
                      |++.+.++++..++ .+++||+++.  ++++.+......            .+..... ....... .    ........
T Consensus       159 f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (485)
T TIGR00711       159 FLINVPIGIIVVVVAFFILPRDKPA--ASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFV  236 (485)
T ss_pred             hhhhhHHHHHHHHHHHHHcCCcccc--ccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHH
Confidence            99988777666555 5556665331  111222111110            0000000 0000000 0    00000001


Q ss_pred             HHHccCccchhHHHhhcccchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHH
Q 013992          253 IEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVS  332 (432)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (432)
                      .++.+++++....+.+++++++...+..+....     .++...++.|.|+++..+.++.+++....+..++.+++.++.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~  311 (485)
T TIGR00711       237 VWELTDDNPLVDLRLFKYRNFTIGCVYMSLLGL-----GLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIA  311 (485)
T ss_pred             HHHHcCCCCccCHHHHcCCChHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            112222233344578888888765544333332     456667788999998877778889999999999999999999


Q ss_pred             HHHHhhhCCchhhHhHHHHHHHHHHHHHHHHhc-cCCCCCccchhcccccccccccccccccccCccchhhhhccCCCCc
Q 013992          333 IYFIDRTGRKKLLVISLSGVILSLGVLSAVFHE-TTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDC  411 (432)
Q Consensus       333 g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  411 (432)
                      |++.||++||+.+.++..+..++..++...... .+.+......++.+++.............   ...|++.|++  +.
T Consensus       312 g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~---~~~~~~~~g~--~~  386 (485)
T TIGR00711       312 GRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIAL---SGLPPHKIAR--GS  386 (485)
T ss_pred             HHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCHHHHhH--HH
Confidence            999999999999888887777766655522211 12122222222333332222212222222   2456699999  88


Q ss_pred             cccccccccc
Q 013992          412 GFCASHSNKV  421 (432)
Q Consensus       412 g~~~~~~~~~  421 (432)
                      |+.+...+..
T Consensus       387 ~~~~~~~~~g  396 (485)
T TIGR00711       387 SLSNFTRQLG  396 (485)
T ss_pred             HHHHHHHHHH
Confidence            8877665544

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK03545 putative arabinose transporter; Provisional

Probab=100.00  E-value=2.9e-32  Score=255.64  Aligned_cols=279  Identities=19%  Similarity=0.164  Sum_probs=216.0

Q ss_pred             hhHHHHHHHHHHhhcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHH
Q 013992           27 PYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVAD  106 (432)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~  106 (432)
                      +++|..+..+.++.+..........+.+|.+.+++|.++.+.   +++.+.+.+++.+++++.|+++||+|||+++..+.
T Consensus         5 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~---g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~   81 (390)
T PRK03545          5 KVAWLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQV---GLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLF   81 (390)
T ss_pred             ccchHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHH
Confidence            334544555555545444444456667899999999999988   99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 013992          107 FLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPG  186 (432)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~  186 (432)
                      ++.+++++++++++|++.++++|+++|++.+...+...+++.|++|+++|++++++...+..+|..++|++++.+.+..+
T Consensus        82 ~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~g  161 (390)
T PRK03545         82 VLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLG  161 (390)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhc
Confidence            99999999999999999999999999999998889999999999999999999999999999999999999999888777


Q ss_pred             chHHHHHhhHHHHHHHHHH-HhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhHH
Q 013992          187 TWRWMLGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLV  265 (432)
Q Consensus       187 ~wr~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (432)
                       ||+.|++.++.+++..+. +..+||.|+    + +                                    ++..++.+
T Consensus       162 -w~~~f~~~~~~~~l~~~~~~~~~~~~~~----~-~------------------------------------~~~~~~~~  199 (390)
T PRK03545        162 -WRTTFLAIGGGALITLLLLIKLLPLLPS----E-H------------------------------------SGSLKSLP  199 (390)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHhCCCCCC----C-C------------------------------------cchHHHHH
Confidence             999999998877766555 444566532    0 0                                    00011235


Q ss_pred             HhhcccchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhh
Q 013992          266 KLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLL  345 (432)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~  345 (432)
                      +.+|++.++......++...     .......+.+.++++..+.+..+.+.......++.++++++.+++.||+++|+..
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~  274 (390)
T PRK03545        200 LLFRRPALVSLYLLTVVVVT-----AHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL  274 (390)
T ss_pred             HHHhCcHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH
Confidence            67888877654433222221     2333445667777776666677788888888889999999999999999987643


Q ss_pred             HhHHHHHHHHH
Q 013992          346 VISLSGVILSL  356 (432)
Q Consensus       346 ~~~~~~~~~~~  356 (432)
                       .+.....++.
T Consensus       275 -~~~~~~~~~~  284 (390)
T PRK03545        275 -IAIALLLVCL  284 (390)
T ss_pred             -HHHHHHHHHH
Confidence             4443333333

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=100.00  E-value=1.9e-31  Score=229.27  Aligned_cols=388  Identities=20%  Similarity=0.233  Sum_probs=284.6

Q ss_pred             CChhHHHHHHHHHHhhcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHH
Q 013992           25 KNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILV  104 (432)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~  104 (432)
                      ..+++|........+.+.+.+-....+.+.|.+...+|.+..+.   .++....+.|..+++..+|.++|++|||+.+..
T Consensus        72 fgrfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~---~llt~~v~~gmllga~~w~l~~d~~grr~~f~~  148 (528)
T KOG0253|consen   72 FGRFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQA---PLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNL  148 (528)
T ss_pred             cccchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhh---hHHHHHHHhhhhhhhhhhheehhhhhcchhhhh
Confidence            35677777777777777777666677778888888999887787   999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCC
Q 013992          105 ADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRA  184 (432)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~  184 (432)
                      .....++..++.+.++|+..+++.|.+.|+|.|+ .|...++-.|..|..+|...+-.. ..+.+|.++...+.......
T Consensus       149 T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~  226 (528)
T KOG0253|consen  149 TFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSN  226 (528)
T ss_pred             hHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999998 888889999999999998877666 88999999999999888888


Q ss_pred             CCchHHHHHhhHHHHHHHHHHHhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHH-----------HHHHHHHhHHHH
Q 013992          185 PGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETE-----------IRDLKESVDKEI  253 (432)
Q Consensus       185 ~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~  253 (432)
                      .+ |||.......+..+....++++||+||+...+++++++.+.+++++..|+.+..           +++.....++.+
T Consensus       227 ~g-wr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~  305 (528)
T KOG0253|consen  227 FG-WRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSK  305 (528)
T ss_pred             hh-HHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhh
Confidence            87 999999999888888888999999999999999999999999887765543211           010000001111


Q ss_pred             HHccCccchhHHHhhcccchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcC-------------------CCchhHH
Q 013992          254 EEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSG-------------------FASNRTA  314 (432)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~  314 (432)
                      .+..++......+ +-.|++++..+.....++...+. +++........++...                   -.+...-
T Consensus       306 ~~a~ke~rg~~~n-Llsp~lrkttlllw~iwfgnafs-yyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~d  383 (528)
T KOG0253|consen  306 SSAAKEVRGGTTN-LLSPKLRKTTLLLWRIWFGNAFS-YYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKD  383 (528)
T ss_pred             hccccccccchHh-hcChHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhH
Confidence            1111222223333 34566666666555555443333 3333333333333321                   1122233


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhCCchhhHhHHHHHHHHHHHHHHHHhccCCCCCccchhcccccccccccccccccc
Q 013992          315 LLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAAT  394 (432)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (432)
                      ..-.++..+..++|.++.+++.||+|||+++..+++++.+..+++...  ........+....-.+........|.++ +
T Consensus       384 YrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c--~~rn~~tvllf~arafisg~fqvaYvYt-P  460 (528)
T KOG0253|consen  384 YRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTC--KTRNAYTVLLFTARAFISGAFQVAYVYT-P  460 (528)
T ss_pred             HHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHh--cCcchhHHHHHHHHHHHhchheEEEEec-C
Confidence            455566778899999999999999999999999888877766554443  3443333333333333333444455555 8


Q ss_pred             cCccchhhhhccCCCCccccccccccccccccccCCC
Q 013992          395 ADRWDCMKCLKASSPDCGFCASHSNKVKGISAISPLI  431 (432)
Q Consensus       395 ~~~~~~~~~~r~~~~~~g~~~~~~~~~~g~~a~~~~~  431 (432)
                      |++|+   .+|++  |-|.|++++...   +.++|+|
T Consensus       461 EVyPT---avRat--gvGtcSsmaRIg---gI~~p~i  489 (528)
T KOG0253|consen  461 EVYPT---AVRAT--GVGTCSSMARIG---GIFSPVI  489 (528)
T ss_pred             cccch---hhhhc--chhhhhhHHhhh---hhhhhHH
Confidence            88888   99999  999999998876   3455543

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=100.00  E-value=7.8e-32  Score=254.49  Aligned_cols=347  Identities=21%  Similarity=0.235  Sum_probs=251.5

Q ss_pred             CChhHHHHHHHHHHhhcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHH
Q 013992           25 KNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILV  104 (432)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~  104 (432)
                      +.+++|..+...++..+.++++....+...|.+.+++|.++.+.   +++.+.+.++..+++++.|+++||+|||+++..
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~---g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~   85 (406)
T PRK11551          9 SSSRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQM---GWAFSAGILGLLPGALLGGRLADRIGRKRILIV   85 (406)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHH
Confidence            44578888888889999999999999999999999999998888   999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCC
Q 013992          105 ADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRA  184 (432)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~  184 (432)
                      +.++..++.+++++++|++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.++..+.+.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~  165 (406)
T PRK11551         86 SVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGD  165 (406)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999888877


Q ss_pred             CCchHHHHHhhHHHHHHHHHH-HhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchh
Q 013992          185 PGTWRWMLGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKIN  263 (432)
Q Consensus       185 ~~~wr~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (432)
                      .+ ||+.|++.++..++..+. ..++||+|++..++++.++.                                   +..
T Consensus       166 ~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----------------------------------~~~  209 (406)
T PRK11551        166 AA-WRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQR-----------------------------------APV  209 (406)
T ss_pred             cC-HHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhh-----------------------------------hhh
Confidence            76 999999887765555544 55678887543221110000                                   000


Q ss_pred             HHHhhcccchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCch
Q 013992          264 LVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKK  343 (432)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~  343 (432)
                      ..+.+++++.+....  .....+......+....+.|.++++.+ .+..+.+.......++.+++.++.|++.||+++|+
T Consensus       210 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~p~~~~~~g-~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~  286 (406)
T PRK11551        210 LRALFGEGRATATLL--LWISYFFTLIVLYFLLNWLPSLLVGQG-LSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRR  286 (406)
T ss_pred             HHHHhhhhhhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCC-CChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            011111111111000  111112222244566677899988754 44667778888888999999999999999999999


Q ss_pred             hhHhHHHHHHHHHHHHHHHHhccCCCCCccchhcccccccccccccccccccCccchhhhhccCCCCccccccccccc
Q 013992          344 LLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKV  421 (432)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~g~~~~~~~~~  421 (432)
                      .+..+.....+++..+...   ...+...+..+..+.+.....+.......+.   +|++.|++  +.|+.+...+..
T Consensus       287 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---~p~~~~g~--~~g~~~~~~~~g  356 (406)
T PRK11551        287 VVLLIYAGILASLAALAAA---PSFAGMLLAGFAAGLFVVGGQSVLYALAPLF---YPTQVRGT--GVGAAVAVGRLG  356 (406)
T ss_pred             HHHHHHHHHHHHHHHHHhc---CcHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---cchhhhhh--hhhHHHHhhhHH
Confidence            8887665555544433322   1222222222223322222222222222344   45589999  888887766543

>PRK09952 shikimate transporter; Provisional

Probab=100.00  E-value=1.6e-31  Score=253.74  Aligned_cols=349  Identities=15%  Similarity=0.116  Sum_probs=230.5

Q ss_pred             hhHHHHHHHHHHhhcccceeccccchhhhh-hhhcc--ccchhhhHHH-HHHHHHHHHHHHHHHHhhhhhhccccchHHH
Q 013992           27 PYVLRLAFSAGIGGLLFGYDTGVISGALLY-IRDDF--KSVDRKTLLQ-ESIVSMAVAGAIIGAAIGGWMNDRFGRRTSI  102 (432)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~--~~~~~~~~~~-~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l  102 (432)
                      .++++.+...+++.+.+++|...++...|. +.+++  +.++...... ....++..++..+++++.|+++||+|||+++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l   97 (438)
T PRK09952         18 SRARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAMGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRML   97 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHH
Confidence            445567777888889999999998888775 45555  5555432111 1122455567889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhCChh--------HHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHH
Q 013992          103 LVADFLFFVGAVIMAAAPNPG--------ALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLS  174 (432)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~  174 (432)
                      +.+.++++++++++++++|+.        .++++|+++|++.|..++....++.|++|+|+|++..+....+..+|..++
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~  177 (438)
T PRK09952         98 MLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLS  177 (438)
T ss_pred             HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHH
Confidence            999999999999999999987        588999999999999999999999999999999999999999999999888


Q ss_pred             HHHHhhccC--------CCCchHHHHHhhHHHHHHHHHHHhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHH
Q 013992          175 YLINLAFTR--------APGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLK  246 (432)
Q Consensus       175 ~~i~~~l~~--------~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (432)
                      ..+...+..        ..+ ||+.|++.+++.++...+....||+|++..++++.+                       
T Consensus       178 ~~~~~~l~~~~~~~~~~~~g-Wr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~-----------------------  233 (438)
T PRK09952        178 TGLVSLISMMTTDEQFLSWG-WRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQA-----------------------  233 (438)
T ss_pred             HHHHHHHHHhCCHHHhhccC-hHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhcc-----------------------
Confidence            777665542        344 999999988776665555556788876432211100                       


Q ss_pred             HHhHHHHHHccCccchhHHHhhcccchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHH
Q 013992          247 ESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNA  326 (432)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (432)
                              +. +++....+.++++++.+...+..    .+......+....|.|.|+++..+.+............+..+
T Consensus       234 --------~~-~~~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~  300 (438)
T PRK09952        234 --------AA-KKRIPVIEALLRHPGAFLKIIAL----RLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSC  300 (438)
T ss_pred             --------cc-cccCCHHHHHHHchHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence                    00 00001112345555554432211    122223455667788888876655555544444555566778


Q ss_pred             HHHHHHHHHHhhhCCchhhHhHHHHHHHHHHHHHHHHhccCCCCCccch-hcccccccccccccccccccCccchhhhhc
Q 013992          327 AGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSA-VETSHFSNLTCPDYSSAATADRWDCMKCLK  405 (432)
Q Consensus       327 ~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r  405 (432)
                      ++.++.|+++||++||+.+..+..+..++...+.............+.. +..+.......+.......|.+|.   +.|
T Consensus       301 i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~---~~r  377 (438)
T PRK09952        301 LTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGA---SYR  377 (438)
T ss_pred             HHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCc---chh
Confidence            8889999999999999988877665544433332222111111111111 111222222222233344565555   899


Q ss_pred             cCCCCccccccc
Q 013992          406 ASSPDCGFCASH  417 (432)
Q Consensus       406 ~~~~~~g~~~~~  417 (432)
                      ++  +.|++...
T Consensus       378 ~t--g~g~~~~~  387 (438)
T PRK09952        378 YS--GAGVGYQV  387 (438)
T ss_pred             HH--HHhHHHHH
Confidence            99  88887644

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=100.00  E-value=5.4e-32  Score=249.65  Aligned_cols=320  Identities=12%  Similarity=-0.006  Sum_probs=216.0

Q ss_pred             ceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHhCChh
Q 013992           44 GYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPG  123 (432)
Q Consensus        44 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~  123 (432)
                      ......+++.+|.+.+|+|.++.+.   +++.+.+.+++.+++++.|+++||+|||++++.+......+.......+|++
T Consensus         4 ~~~~~~~~~~lp~i~~~~~~s~~~~---g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~   80 (368)
T TIGR00903         4 QAIWVTFSPVLSLVAEDIDVSKEEL---GLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYE   80 (368)
T ss_pred             hHHHHHHHhhHHHHHHHhCcCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHH
Confidence            3445567899999999999999888   9999999999999999999999999999987766555545443334447999


Q ss_pred             HHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHHHHHH
Q 013992          124 ALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQF  203 (432)
Q Consensus       124 ~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~~~~~  203 (432)
                      .+++.|+++|++.+. .+.....++|++|+|+|++++++.+.+..+|..+++++++++.+..+ ||+.|++.++++++..
T Consensus        81 ~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~g-Wr~~f~~~~~l~~~~~  158 (368)
T TIGR00903        81 WLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGG-LQLLIIPIAAVAAAGI  158 (368)
T ss_pred             HHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-hHHHHHHHHHHHHHHH
Confidence            999999999999985 45566677999999999999999999999999999999999988777 9999999887776655


Q ss_pred             HH-HhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhHHHhhcccchhHHHHHHHH
Q 013992          204 IL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVG  282 (432)
Q Consensus       204 ~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (432)
                      ++ ++++||+|++..   +..               +.  +          +     ...+.++++++|.+|...+..++
T Consensus       159 ~~~~~~lp~~p~~~~---~~~---------------~~--~----------~-----~~~~~~~ll~~~~~~~~~~~~~~  203 (368)
T TIGR00903       159 ILVLAALPALPFQAA---EGF---------------GF--K----------D-----AVKEFGALAGRKDLWIIGAILGF  203 (368)
T ss_pred             HHHHHHcCCCCCCCC---CCc---------------ch--H----------H-----HHHHHHHHHcChhHHHHHHHHHH
Confidence            54 667899875310   000               00  0          0     00134678899888765544333


Q ss_pred             HHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCc---hhhHh-HHHHHHHHHHH
Q 013992          283 LQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRK---KLLVI-SLSGVILSLGV  358 (432)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~---~~~~~-~~~~~~~~~~~  358 (432)
                           ....++.+..|.|.|+++.+. +.. .+.......+.+.   +..++++||..||   +.... ...+..+.+..
T Consensus       204 -----~~~~~~~~~~wlp~~L~~~g~-s~~-~~~~~~l~~~~g~---~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~  273 (368)
T TIGR00903       204 -----GVALFDNLAIWLEAALRPAGL-EDI-AGDAVALAILAGL---IGVAVIPDRVARAGLRSIYIRAAALLIAAFFLA  273 (368)
T ss_pred             -----HHHHHHHHHHHHHHHHHHCCC-ChH-HHHHHHHHHHHHH---HHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence                 333677888899999987654 343 4444444444444   4457888887643   32222 22222222222


Q ss_pred             HHHHHhccCCCCCccchhcccccccccccccccccccCccchhhhhccCCCCccccccccccc
Q 013992          359 LSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKV  421 (432)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~g~~~~~~~~~  421 (432)
                      +.  ... ..........+.+++.....+......+|.+|+   +.|++  +.|+.....+..
T Consensus       274 ~~--~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~---~~rgt--~~G~~~~~g~~~  328 (368)
T TIGR00903       274 LA--FEL-NRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDK---ELHGK--AAGAIGFTSRAI  328 (368)
T ss_pred             HH--Hcc-ccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcch---hhcCc--ccchhhHHHHHH
Confidence            22  111 111111111222222222222233333555555   99999  999998877765

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK15075 citrate-proton symporter; Provisional

Probab=99.98  E-value=6.8e-31  Score=249.55  Aligned_cols=281  Identities=19%  Similarity=0.225  Sum_probs=201.6

Q ss_pred             HHHHHHHHHHhhcccceeccccchhhhhhhhccccchhhhHHHHHHHHH-----HHHHHHHHHHhhhhhhccccchHHHH
Q 013992           29 VLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSM-----AVAGAIIGAAIGGWMNDRFGRRTSIL  103 (432)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~-----~~~~~~i~~~~~g~l~dr~Grr~~l~  103 (432)
                      |++....++++.+++++|+..++...|.+.+|++.++.+..  .+..+.     ..++..+++++.|+++||+|||++++
T Consensus        13 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~   90 (434)
T PRK15075         13 KARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFA--SLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLI   90 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchH--HHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHH
Confidence            44567888889999999999999999999999998776641  222222     23333578899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCChhH--------HHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHH
Q 013992          104 VADFLFFVGAVIMAAAPNPGA--------LITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSY  175 (432)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~--------~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~  175 (432)
                      .+.+++++++++++++++++.        ++++|+++|++.+...+....+++|++|+++|++++++......+|..+++
T Consensus        91 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~  170 (434)
T PRK15075         91 VTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAA  170 (434)
T ss_pred             HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999874        689999999999999998999999999999999999999988888888777


Q ss_pred             HHHhhcc--------CCCCchHHHHHhhHHHHHHHHHHHhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHH
Q 013992          176 LINLAFT--------RAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKE  247 (432)
Q Consensus       176 ~i~~~l~--------~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (432)
                      .+++.+.        +..+ ||+.|++.++...+........||++++..+                             
T Consensus       171 ~~g~~l~~~~~~~~~~~~g-Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~-----------------------------  220 (434)
T PRK15075        171 LLGYLLNQWLSPAQMAEWG-WRIPFLIGCLIVPFIFLIRRSLEETEEFLAR-----------------------------  220 (434)
T ss_pred             HHHHHHHHhCCHHHHhccc-hHHHHHHHHHHHHHHHHHHHhcCCCHHHHHh-----------------------------
Confidence            7776652        3445 9999987654432222222223443211000                             


Q ss_pred             HhHHHHHHccCccchhHHHhhcccchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHH
Q 013992          248 SVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAA  327 (432)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (432)
                             +++.+.+...++..++++.+.   ..+. ..+.+...++....|.|.|+++..+.+..+.+....+..++.++
T Consensus       221 -------~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~  289 (434)
T PRK15075        221 -------KHRPSMREIFRSLAANWRIVL---AGML-MVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFI  289 (434)
T ss_pred             -------hhccccccHHHHHHHhHHHHH---HHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence                   000000111222233332221   1111 22223335667888899999886556667777888888888999


Q ss_pred             HHHHHHHHHhhhCCchhhHhHHHHH
Q 013992          328 GSIVSIYFIDRTGRKKLLVISLSGV  352 (432)
Q Consensus       328 ~~~~~g~l~d~~~~~~~~~~~~~~~  352 (432)
                      +.++.|+++||++||+.+..+....
T Consensus       290 ~~~~~g~l~Dr~g~r~~~~~~~~~~  314 (434)
T PRK15075        290 WLPIGGALSDRIGRRPVLIAFTVLA  314 (434)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHH
Confidence            9999999999999999877654443

>TIGR00895 2A0115 benzoate transport

Probab=99.98  E-value=1.8e-31  Score=251.47  Aligned_cols=374  Identities=22%  Similarity=0.238  Sum_probs=252.1

Q ss_pred             CChhHHHHHHHHHHhhcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHH
Q 013992           25 KNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILV  104 (432)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~  104 (432)
                      .++++++.+...++..+..+++....++..|.+.+++|.+..+.   +++.+.+.++..++.++.|+++||+|||+++..
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~   87 (398)
T TIGR00895        11 LSRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQL---GFLFSAGLIGMAFGALFFGPLADRIGRKRVLLW   87 (398)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHH---HHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHH
Confidence            34556666677777777888888888899999999999988888   999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCC
Q 013992          105 ADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRA  184 (432)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~  184 (432)
                      +.++.+++.++..++++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++.+++.+.+.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  167 (398)
T TIGR00895        88 SILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPV  167 (398)
T ss_pred             HHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             CCchHHHHHhhHHHHHHHH-HHHhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchh
Q 013992          185 PGTWRWMLGVAGIPALLQF-ILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKIN  263 (432)
Q Consensus       185 ~~~wr~~f~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (432)
                      .+ ||+.|++.++..++.. +.+.++||++++..++ +.++..+..++.......+.+.       +.++++.+++....
T Consensus       168 ~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~  238 (398)
T TIGR00895       168 FG-WRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEAQS-------ALPEQKATQGTKRS  238 (398)
T ss_pred             cc-ceeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhccccccc-------cccccccccchhhH
Confidence            77 9999998875555444 4467788887655444 2232222222111100000000       00000000111112


Q ss_pred             HHH-hhcccchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCc
Q 013992          264 LVK-LLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRK  342 (432)
Q Consensus       264 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~  342 (432)
                      ..+ .++++..+..... . ...+.....+.....+.|.+.++.+ .+....+.......++.+++.++.+++.||+++|
T Consensus       239 ~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  315 (398)
T TIGR00895       239 VFKALFQGKTARITVLL-W-LLYFMLLVGVYFLTNWLPKLMVELG-FSLSLAATGGALFNFGGVIGSIIFGWLADRLGPR  315 (398)
T ss_pred             HHHHHhcchhHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchH
Confidence            222 3333322222221 1 1222333355666777886665554 4466777888888899999999999999999988


Q ss_pred             hhhHhHHHHHHHHHHHHHHHHhccCCCCCccchhcccccccccccccccccccCccchhhhhccCCCCccccccccccc
Q 013992          343 KLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKV  421 (432)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~g~~~~~~~~~  421 (432)
                      +.... ..+..+...++...  ....+......+..+.+.....+.......+.   .|++.|++  +.|+.....+..
T Consensus       316 ~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---~~~~~~g~--~~g~~~~~~~~g  386 (398)
T TIGR00895       316 VTALL-LLLGAVFAVLVGST--LFSPTLLLLLGAIAGFFVNGGQSGLYALMALF---YPTAIRAT--GVGWAIGIGRLG  386 (398)
T ss_pred             HHHHH-HHHHHHHHHHHHHH--hhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCHHHHHH--HHHHHHHHHHHH
Confidence            44333 33333333322221  11222222333334443333333333333444   45599999  888877665543

>PRK10504 putative transporter; Provisional

Probab=99.97  E-value=2.2e-30  Score=249.19  Aligned_cols=374  Identities=16%  Similarity=0.179  Sum_probs=256.7

Q ss_pred             HHHHHHhhcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHH
Q 013992           33 AFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVG  112 (432)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~  112 (432)
                      +..++++.++..++....++.+|.+.+++|.+..+.   +++.+.+.++..++.++.|+++||+|||++++.+.++.+++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~   88 (471)
T PRK10504         12 LWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHM---HMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLG   88 (471)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence            445666778888888889999999999999998888   88999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHH
Q 013992          113 AVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWML  192 (432)
Q Consensus       113 ~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f  192 (432)
                      .++++++++++.+++.|+++|++.+...+...+++.|++|+++|+++.++......+|..++|.+++.+.+..+ ||+.|
T Consensus        89 ~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~g-w~~~f  167 (471)
T PRK10504         89 SLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYAS-WHWIF  167 (471)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcc-HHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998877 99999


Q ss_pred             HhhHHHHHHHHHH-HhhcCCCHHHHHHcCCHHHHHHHHHH---------hCCCCc---hHHHHHHH-----HHHhHHHHH
Q 013992          193 GVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRK---------VYPAHE---VETEIRDL-----KESVDKEIE  254 (432)
Q Consensus       193 ~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~---------~~~~~~---~~~~~~~~-----~~~~~~~~~  254 (432)
                      ++......+..+. ....|+.+.   ++.+.+........         ......   ........     ........+
T Consensus       168 ~~~~~~~~l~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (471)
T PRK10504        168 LINIPVGIIGAIATLMLMPNYTM---QTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLH  244 (471)
T ss_pred             HHHHHHHHHHHHHHHHhCCCccc---cCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHH
Confidence            9988766666555 444455432   11122221111000         000000   00000000     000000011


Q ss_pred             HccCccchhHHHhhcccchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 013992          255 EEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIY  334 (432)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  334 (432)
                      +++..++....+++|+|.++......++...     .......+.|.|++...+.++...++...+..++.+++.++.++
T Consensus       245 ~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~  319 (471)
T PRK10504        245 ARNNNRALFSLKLFRTRTFSLGLAGSFAGRI-----GSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQ  319 (471)
T ss_pred             HhcCCCCccCHHHhcccchHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1222223334468899988765444333222     44556667888888766677888888888888888888899999


Q ss_pred             HHhhhCCchhhHhHHHHHHHHHHHHHHHHhccCCCCCccchhcccccccccccccccccccCccchhhhhccCCCCcccc
Q 013992          335 FIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFC  414 (432)
Q Consensus       335 l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~g~~  414 (432)
                      +.||+++|+.+..+..+..+...++.........+......+..+.......+.......+   ..|++.++.  +.|+.
T Consensus       320 l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~~g~--~~~~~  394 (471)
T PRK10504        320 VVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLK---DLPDNLASS--GNSLL  394 (471)
T ss_pred             HHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCCHHhccc--hHHHH
Confidence            9999999999988887777665555443221111111111222222222222222222222   445588888  87776


Q ss_pred             ccccccccc
Q 013992          415 ASHSNKVKG  423 (432)
Q Consensus       415 ~~~~~~~~g  423 (432)
                      +...+...+
T Consensus       395 ~~~~~~g~~  403 (471)
T PRK10504        395 SMIMQLSMS  403 (471)
T ss_pred             HHHHHHHHH
Confidence            655544433

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.97  E-value=1.3e-30  Score=244.30  Aligned_cols=281  Identities=16%  Similarity=0.138  Sum_probs=217.5

Q ss_pred             hHHHHHHHHHHhhcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHH
Q 013992           28 YVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADF  107 (432)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~  107 (432)
                      ..|.....++++.+..... ...++.+|.+.+|+|.+..+.   +++.+.+.+++.+++++.|+++||+|||+++..+..
T Consensus         7 ~~~~~~~~~~~~~~~~~~~-~~~~~~lp~i~~~~~~s~~~~---g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~   82 (393)
T PRK09705          7 LNFMLLVLVLIGLNMRPLL-TSVGPLLPQLRQASGMSFSVA---ALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLL   82 (393)
T ss_pred             hHHHHHHHHHHHHHcchhh-hccchhHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHH
Confidence            3454555555555544433 557899999999999999998   999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCc
Q 013992          108 LFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGT  187 (432)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~  187 (432)
                      +++++.+++++++|++.++++|+++|++.+...+....++.|++| ++|+++++.+..+..+|..+++.+++++.++..+
T Consensus        83 l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~  161 (393)
T PRK09705         83 LIAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSET  161 (393)
T ss_pred             HHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            999999999999999999999999999999999999999999997 7799999999999999999999999998887635


Q ss_pred             hHHHHHhhHHHHHHHHHHHhhcCC-CHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhHHH
Q 013992          188 WRWMLGVAGIPALLQFILMLLLPE-SPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVK  266 (432)
Q Consensus       188 wr~~f~~~~~~~~~~~~~~~~~~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (432)
                      ||+.+.+.++..++..+.++...+ .|+        +                              +++ +  +....+
T Consensus       162 w~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~------------------------------~~~-~--~~~~~~  200 (393)
T PRK09705        162 WYQTLAWWALPAVVALFAWWWQSAREVA--------S------------------------------SHK-T--TTTPVR  200 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCc--------c------------------------------ccC-C--CcCCcc
Confidence            999887766655544433333222 110        0                              000 0  011234


Q ss_pred             hhcccchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhhH
Q 013992          267 LLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLV  346 (432)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~  346 (432)
                      .+++++.+...+..     +.....+.....+.|.++++. +.+..+++.......++.++++++.+++.||.+||+...
T Consensus       201 ~l~~~~~~~l~~~~-----~~~~~~~~~~~~~lp~~l~~~-g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~  274 (393)
T PRK09705        201 VVFTPRAWTLGVYF-----GLINGGYASLIAWLPAFYIEI-GASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLM  274 (393)
T ss_pred             cccCHhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHc-CCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHH
Confidence            45666655433322     222235667778899999885 555777888888899999999999999999999999888


Q ss_pred             hHHHHHHHHHHHHH
Q 013992          347 ISLSGVILSLGVLS  360 (432)
Q Consensus       347 ~~~~~~~~~~~~~~  360 (432)
                      .+..+..++..++.
T Consensus       275 ~~~~l~~~~~~~~~  288 (393)
T PRK09705        275 LALVLQLVGFCGFI  288 (393)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88776666655443

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.97  E-value=5.5e-31  Score=247.92  Aligned_cols=279  Identities=19%  Similarity=0.190  Sum_probs=219.0

Q ss_pred             hcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHh
Q 013992           40 GLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAA  119 (432)
Q Consensus        40 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~  119 (432)
                      ++...++...++...|.+.+++|.++.+.   +++.+++.++..++.++.|+++||+|||+++..+.++.+++.++++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~   79 (399)
T TIGR00893         3 TVINYLDRANLSFAAPMLQEDLGLSAAQY---GYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA   79 (399)
T ss_pred             ehHHHHHHHhhhHhHHHHHHhhCCChhhH---HHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH
Confidence            34566777888999999999999998888   999999999999999999999999999999999999999999999999


Q ss_pred             CChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHH
Q 013992          120 PNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPA  199 (432)
Q Consensus       120 ~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~  199 (432)
                      +|++.+++.|+++|++.+...+....++.|++|+++|++++++.+....+|..+++.+++.+.+..+ ||+.|++.++..
T Consensus        80 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~  158 (399)
T TIGR00893        80 GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFS-WQWAFIIEGVLG  158 (399)
T ss_pred             cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCC-chHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999888777 999999988877


Q ss_pred             HHHHHH-HhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhHHHhhcccchhHHHH
Q 013992          200 LLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLI  278 (432)
Q Consensus       200 ~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (432)
                      ++..+. +++.||+|+.. +..++++.....+..               ..+.+.+++++.++...++.+++|+++...+
T Consensus       159 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (399)
T TIGR00893       159 IIWGVLWLKFIPDPPQKA-KWLTEEEKYIVVGGL---------------LAEQQGKGPSTPKKYQIKELLKDRRVWGLAL  222 (399)
T ss_pred             HHHHHHhhheecCCCCcc-ccCCHHHHhhcchhh---------------ccccccccccCCCccchHHHhcCHHHHHHHH
Confidence            766655 44556654310 000111100000000               0000011122233445677888887766444


Q ss_pred             HHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCch
Q 013992          279 AGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKK  343 (432)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~  343 (432)
                      ..+.     ..........+.|.|+++..+.+..+.+.......++.+++.++.|++.||++||+
T Consensus       223 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  282 (399)
T TIGR00893       223 GQFL-----VNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRG  282 (399)
T ss_pred             HHHH-----HHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            3332     23356677788899988877777788888888889999999999999999999886

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.97  E-value=2.3e-29  Score=243.94  Aligned_cols=384  Identities=18%  Similarity=0.158  Sum_probs=248.8

Q ss_pred             hhHHHHHHHHHHhhcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHH
Q 013992           27 PYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVAD  106 (432)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~  106 (432)
                      +++|+.+..++++.+++.++....++.+|.+.+++|.+..+.   +++.+.+.++..+++++.|+++||+|||++++.+.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~   92 (496)
T PRK03893         16 RAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQA---ASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISI   92 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence            466778888888889999999999999999999999998888   99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 013992          107 FLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPG  186 (432)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~  186 (432)
                      ++.+++.++.++++|++.+++.|++.|++.+...+....++.|++|+++|++++++...+..+|..+++.+.+.+.+..+
T Consensus        93 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  172 (496)
T PRK03893         93 VLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWG  172 (496)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988777


Q ss_pred             chHHHHHhhHHHHHHHHHHHhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHH-HHHH--HhHHHHHHccCccchh
Q 013992          187 TWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIR-DLKE--SVDKEIEEEGSSEKIN  263 (432)
Q Consensus       187 ~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~  263 (432)
                       ||+.|++.++..++..+....+||++++..++++.++.++..+.....+....... ....  ................
T Consensus       173 -w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (496)
T PRK03893        173 -WRALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIV  251 (496)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhHH
Confidence             99999886655555444455678876543322211111111111000000000000 0000  0000000000000000


Q ss_pred             ----------H-HHhhcccchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHH
Q 013992          264 ----------L-VKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVS  332 (432)
Q Consensus       264 ----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (432)
                                . ....+.+..+...........+..+...+....+.|.|+++..+.+..+.+.......++.+++.++.
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~  331 (496)
T PRK03893        252 AVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVG  331 (496)
T ss_pred             HHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence                      0 00000000000111111111111111223456788999976656667888888899999999999999


Q ss_pred             HHHHhhhCCchhhHhHHHHHHHHHHHHHHHHhccCCCCCccchhcccccccccccccccccccCccchhhhhccCCCCcc
Q 013992          333 IYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCG  412 (432)
Q Consensus       333 g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~g  412 (432)
                      |++.||+++|+.+..+..+..+..+.+.... ....+......+..+...............   +.+|++.|++  +.|
T Consensus       332 g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~--~~~  405 (496)
T PRK03893        332 GFLGDWLGTRKAYVCSLLISQLLIIPVFAIG-GANVWVLGLLLFFQQMLGQGISGLLPKLIG---GYFDTEQRAA--GLG  405 (496)
T ss_pred             HHHHHHhcchHHHHHHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHHHhcccchhhHHHHH---hhCCHHHhhc--ccc
Confidence            9999999999988877655554443322221 111111111111111111111112222222   3445699999  888


Q ss_pred             cccccccc
Q 013992          413 FCASHSNK  420 (432)
Q Consensus       413 ~~~~~~~~  420 (432)
                      +.....+.
T Consensus       406 ~~~~~~~~  413 (496)
T PRK03893        406 FTYNVGAL  413 (496)
T ss_pred             hhhhhhhH
Confidence            87766654

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.97  E-value=2.7e-30  Score=246.65  Aligned_cols=286  Identities=14%  Similarity=0.070  Sum_probs=205.7

Q ss_pred             hhHHHHHHHHHHhhcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHH
Q 013992           27 PYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVAD  106 (432)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~  106 (432)
                      +++|..+..+++.....+.++..++...|++.++ |.+..+.   +++.+.+.+++.+++++.|+++||+|||++++.+.
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~---g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~  100 (452)
T PRK11273         25 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDL---GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGL  100 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHH---HHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHH
Confidence            4456666666666666777777778888999888 9988888   99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHh----CChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHH-HHHHHHhhc
Q 013992          107 FLFFVGAVIMAAA----PNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQF-LSYLINLAF  181 (432)
Q Consensus       107 ~~~~~~~~~~~~~----~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~-i~~~i~~~l  181 (432)
                      ++.+++.+++++.    .+++.+++.|++.|++.+...+.....+.|++|+++|++++++++.+..+|.. .+++++..+
T Consensus       101 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~  180 (452)
T PRK11273        101 ILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGM  180 (452)
T ss_pred             HHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            9999999988875    37888899999999999988888888899999999999999999999888864 555544333


Q ss_pred             cCCCCchHHHHHhhHHHHHHHHHH-HhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCcc
Q 013992          182 TRAPGTWRWMLGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSE  260 (432)
Q Consensus       182 ~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (432)
                      .... +||+.|++.+++.++..++ .+++||+|+....++ .++.++   +             ..+. .+++++++.+.
T Consensus       181 ~~~~-gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~---~-------------~~~~-~~~~~~~~~~~  241 (452)
T PRK11273        181 AWFN-DWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPP-IEEYKN---D-------------YPDD-YNEKHEQELTA  241 (452)
T ss_pred             HHhc-cHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCC-hhhhhh---c-------------cccc-cccccCCCccH
Confidence            3333 4999999988777665444 677788865311111 110000   0             0000 00000000001


Q ss_pred             chh-HHHhhcccchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013992          261 KIN-LVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRT  339 (432)
Q Consensus       261 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~  339 (432)
                      +.. ....+|++.+|...+...+...     ..+....+.|.|+++..+.+..+++.......++.+++.++.|+++||+
T Consensus       242 ~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~  316 (452)
T PRK11273        242 KQIFMQYVLPNKLLWYIAIANVFVYL-----LRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV  316 (452)
T ss_pred             HHHHHHHHHcChHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111 1236677777764444333222     4456777999999987666667777777888888999999999999999


Q ss_pred             C
Q 013992          340 G  340 (432)
Q Consensus       340 ~  340 (432)
                      +
T Consensus       317 ~  317 (452)
T PRK11273        317 F  317 (452)
T ss_pred             c
Confidence            4

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.97  E-value=2.5e-30  Score=248.28  Aligned_cols=290  Identities=20%  Similarity=0.170  Sum_probs=227.7

Q ss_pred             CCChhHHHHHHHHHHhhcccceeccccchhhhhhhh----------------------ccccchhhhHHHHHHHHHHHHH
Q 013992           24 WKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRD----------------------DFKSVDRKTLLQESIVSMAVAG   81 (432)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~----------------------~~~~~~~~~~~~~~~~s~~~~~   81 (432)
                      ...+.|+.+...++++..+.+.|+..++...+.+.+                      |++.+..+.   |++.+.+.++
T Consensus        12 ~~~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~---g~~~s~~~~~   88 (465)
T TIGR00894        12 YFCSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQ---GLILSSHFYG   88 (465)
T ss_pred             cccCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHh---hHHHHHHHHH
Confidence            346677888888888888999999999998888876                      677777777   9999999999


Q ss_pred             HHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHH--hCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhH
Q 013992           82 AIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAA--APNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGAL  159 (432)
Q Consensus        82 ~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~  159 (432)
                      +.+++++.|+++||+|||+++..+.++++++.+++.+  ..+++.+++.|+++|++.+...+....++.|++|+++|+++
T Consensus        89 ~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~  168 (465)
T TIGR00894        89 QIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRL  168 (465)
T ss_pred             HHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHH
Confidence            9999999999999999999999999999999888754  46788999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccCCC-CchHHHHHhhHHHHHHHHHHHhh-cCCCHHHHHHcCCHHHHHHHHHHhCCCCc
Q 013992          160 VSTNGFLITSGQFLSYLINLAFTRAP-GTWRWMLGVAGIPALLQFILMLL-LPESPRWLYRKGREEEAQAILRKVYPAHE  237 (432)
Q Consensus       160 ~~~~~~~~~~g~~i~~~i~~~l~~~~-~~wr~~f~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (432)
                      +++...+..+|..+++++.+.+.+.. + ||+.|++.+++.++..++++. .+|+|+... +.+++|.+           
T Consensus       169 ~~~~~~~~~~g~~i~~~l~~~l~~~~~g-w~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~-----------  235 (465)
T TIGR00894       169 LGMSTSGFQLGTFIFLPISGWLCESWGG-WPMIFYVFGIVGCAWSLLWFVFPADDPSIHP-CISKFEKK-----------  235 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCC-CCeehhhhhHHHHHHHHHHHHHhcCCcccCC-CCCHHHHH-----------
Confidence            99999999999999999999998874 6 999999999888777666444 556653110 11111100           


Q ss_pred             hHHHHHHHHHHhHHHHHHccCccchhHHHhhcccchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHH
Q 013992          238 VETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLL  317 (432)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (432)
                            ...+..  ++++++.+.+..+++.++++.+|...+..     ++.....+....|.|.|+++..+.+..+.+..
T Consensus       236 ------~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~  302 (465)
T TIGR00894       236 ------YINSSL--QGQKGSTRQSLPIKAIPKSLPVWAIWFAI-----FGHFWLYTILPTYLPTFISWVLRVSGKENGLL  302 (465)
T ss_pred             ------HHHhhc--ccccCCCCCCCCHHHHhcCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhCcChHHhHHH
Confidence                  000000  00011112234577888888877644433     33344667788899999988767778888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhCCc
Q 013992          318 SLVTSGLNAAGSIVSIYFIDRTGRK  342 (432)
Q Consensus       318 ~~~~~~~~~~~~~~~g~l~d~~~~~  342 (432)
                      .....++.+++.++.|+++||+++|
T Consensus       303 ~~~~~~~~~i~~~~~g~l~d~~~~~  327 (465)
T TIGR00894       303 SSLPYLFAWLCSIFAGYLADFLKSS  327 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            8888999999999999999997644

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.97  E-value=7.1e-31  Score=245.48  Aligned_cols=323  Identities=17%  Similarity=0.091  Sum_probs=227.9

Q ss_pred             ccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHhCChhHHH
Q 013992           47 TGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALI  126 (432)
Q Consensus        47 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~  126 (432)
                      ....++..|++.+++|.+..+.   +++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.+++++++|++.++
T Consensus        19 ~~~~~~~~~~~~~~~~~s~~~~---g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (377)
T TIGR00890        19 VYTWTLLAPPLGRYFGVGVTAV---AIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALY   95 (377)
T ss_pred             HhhhhhHHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            5567889999999999998888   9999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHHHHHHHH-
Q 013992          127 TGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFIL-  205 (432)
Q Consensus       127 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~~~~~~~-  205 (432)
                      +.|++.|++.+...+.....+.|++| |+|+++.++...+..+|..+++.+.+.+.+..+ ||+.|++.++..++..+. 
T Consensus        96 ~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~f~~~~~~~~~~~~~~  173 (377)
T TIGR00890        96 LTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEG-VPAAFIYMGIIFLLVIVLG  173 (377)
T ss_pred             HHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHH
Confidence            99999999999888888888999987 569999999999999998877666666666665 999999999887776665 


Q ss_pred             HhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhHHHhhcccchhHHHHHHHHHHH
Q 013992          206 MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQV  285 (432)
Q Consensus       206 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (432)
                      +++++|+|+.. .++                                 +++.++++.+.++.+++++++...+..+... 
T Consensus       174 ~~~~~~~~~~~-~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  218 (377)
T TIGR00890       174 AFLIGYPPGQL-IKT---------------------------------NIEVSVKDYTVWEMLRTPQFWVLYLSFFLNA-  218 (377)
T ss_pred             HHheecCchhc-ccc---------------------------------CcccchhhhhHHHHHcCccHHHHHHHHHHHh-
Confidence            44455543200 000                                 0000011123456777877765443322211 


Q ss_pred             HhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhhHhHHHHHHHHHHHHHHHHhc
Q 013992          286 FQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHE  365 (432)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (432)
                          ........+.+.|.++.+ .++.+.+.......+..++++++.|++.||++||+.+..+..+..++..++......
T Consensus       219 ----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~  293 (377)
T TIGR00890       219 ----VSGLLLIGLYKPYGQSLG-LSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPML  293 (377)
T ss_pred             ----HHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccc
Confidence                122333445566666654 446667777888889999999999999999999999888877777766554433211


Q ss_pred             cCCCCCccchhcccccccccccccccccccCccchhhhhccCCCCcccccccccc
Q 013992          366 TTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNK  420 (432)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~g~~~~~~~~  420 (432)
                       ............+...............+   ..|++.|++  ..|+.+...+.
T Consensus       294 -~~~~~~~~~~~~g~~~g~~~~~~~~~~~~---~~~~~~~~~--~~g~~~~~~~~  342 (377)
T TIGR00890       294 -NDVLFLATVALVFFTWGGTISLFPSLVSD---IFGPANSAA--NYGFLYTAKAV  342 (377)
T ss_pred             -hhHHHHHHHHHHHHHhccchhccHHHHHH---Hhhhhhhhh--HhHHHHHHHHH
Confidence             11111111122222222222222222233   345588999  88887665544

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.97  E-value=1.1e-29  Score=238.19  Aligned_cols=278  Identities=18%  Similarity=0.167  Sum_probs=223.7

Q ss_pred             hcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHh
Q 013992           40 GLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAA  119 (432)
Q Consensus        40 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~  119 (432)
                      .+..........+..|.+.+++|.++.+.   +++.+.+.++..+++++.|+++||+|||+++..+.++..++.++.+++
T Consensus        14 ~~~~~~~~~~~~~~~p~~~~~~g~s~~~~---g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~   90 (385)
T TIGR00710        14 SILGPLGIDMYLPAFPEIAADLSTPASIV---QMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALS   90 (385)
T ss_pred             HHHHHHHHHHhcccHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence            45556677888899999999999998888   999999999999999999999999999999999999999999999999


Q ss_pred             CChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHH
Q 013992          120 PNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPA  199 (432)
Q Consensus       120 ~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~  199 (432)
                      ++++.+.+.|++.|++.+...+...+++.|++|+++|+++.++.+....+|..+++.+++.+.+..+ ||+.|++.++..
T Consensus        91 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-~~~~~~~~~~~~  169 (385)
T TIGR00710        91 NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLS-WHAIFAFLSLAG  169 (385)
T ss_pred             ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999888776 999999988776


Q ss_pred             HHHHHH-HhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhHHHhhcccchhHHHH
Q 013992          200 LLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLI  278 (432)
Q Consensus       200 ~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (432)
                      ++..+. +++.||+++.    ++.+                                +.++.....++.+++++++...+
T Consensus       170 ~~~~~~~~~~~~~~~~~----~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~  213 (385)
T TIGR00710       170 ILLSALIFFILPETLPY----EARI--------------------------------QISTYFETFLLLLKSKMFWGYAL  213 (385)
T ss_pred             HHHHHHHHHhCCCCCCC----cccC--------------------------------CHHHHHHHHHHHHcCchhHHHHH
Confidence            666555 4556665321    0000                                00001123456778887766444


Q ss_pred             HHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhhHhHHHHHHHHHHH
Q 013992          279 AGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGV  358 (432)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~  358 (432)
                      ......     ........+.|.++++..+.++.+.+.......++.+++.++.+++.||+++|+.+..+..+..++..+
T Consensus       214 ~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~  288 (385)
T TIGR00710       214 IYGASF-----GGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVL  288 (385)
T ss_pred             HHHHHH-----HHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            322222     234555667788887666666788888888888999999999999999999999888877776666655


Q ss_pred             HHHH
Q 013992          359 LSAV  362 (432)
Q Consensus       359 ~~~~  362 (432)
                      +...
T Consensus       289 ~~~~  292 (385)
T TIGR00710       289 LEIT  292 (385)
T ss_pred             HHHH
Confidence            5443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.97  E-value=6.4e-29  Score=230.57  Aligned_cols=294  Identities=13%  Similarity=0.045  Sum_probs=222.4

Q ss_pred             chheeeccCCCC---hhHHHHHHHHHHhhcccceeccccchhhhhhhh-ccccchhhhHHHHHHHHHHHHHHHHHHHhhh
Q 013992           15 AFRECFSLSWKN---PYVLRLAFSAGIGGLLFGYDTGVISGALLYIRD-DFKSVDRKTLLQESIVSMAVAGAIIGAAIGG   90 (432)
Q Consensus        15 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g   90 (432)
                      ++++++++.|.+   +-.++.+....++.++........++..+.+.+ ++|+++.|.   +++.+++.+++.++.++.|
T Consensus        15 ~w~pe~~~~w~~~~~~~a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~---g~l~ai~~l~~al~rip~G   91 (462)
T PRK15034         15 DWKPENPAFWENKGKHIARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQL---FLLTALPSVSGALLRVPYS   91 (462)
T ss_pred             CCCCCChHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHH---HHHHHHHHHHHHHHHHHHH
Confidence            344444433332   234567777777788888889999999999876 899999998   9999999999999999999


Q ss_pred             hhhccccchHHHHHHHHHHHHHHHHHHHh-----CChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHH
Q 013992           91 WMNDRFGRRTSILVADFLFFVGAVIMAAA-----PNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGF  165 (432)
Q Consensus        91 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~  165 (432)
                      ++.||+|.|+++.++.+++.+.+++.+++     ++++.+++.|++.|++ +..++.....+++|+|+++||+++++...
T Consensus        92 ~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g  170 (462)
T PRK15034         92 FMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGG  170 (462)
T ss_pred             HHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHH
Confidence            99999999999999999999999999987     8999999999999998 66888999999999999999999999976


Q ss_pred             HHHHHHHHHHHHHhhcc-----C-------------CCCchHHHHHhhHHHHHHHHHHHhh-cCCCHHHHHHcCCHHHHH
Q 013992          166 LITSGQFLSYLINLAFT-----R-------------APGTWRWMLGVAGIPALLQFILMLL-LPESPRWLYRKGREEEAQ  226 (432)
Q Consensus       166 ~~~~g~~i~~~i~~~l~-----~-------------~~~~wr~~f~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~  226 (432)
                      ..++|..+++++...+.     .             .. +||..+++..++.++..++.++ .+|.|+            
T Consensus       171 ~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~-~~~~~~~~~~~~~iv~~i~~~~~~~~~~~------------  237 (462)
T PRK15034        171 LGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVM-SLANAAWIWVPLLAIATIAAWSGMNDIAS------------  237 (462)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchH-HHHHHHHHHHHHHHHHHHHHHHhCCCccc------------
Confidence            66677766555554322     1             11 3888888888777766666444 433321            


Q ss_pred             HHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhHHHhhcccchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHc
Q 013992          227 AILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLS  306 (432)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (432)
                                                    ++.+..+.++.+|+|+.|...+..     ++.+..+..+.++.|.|.++.
T Consensus       238 ------------------------------~~~~~~~~~~vlk~~~~Wllslly-----~~tFG~fvg~s~~lp~~~~~~  282 (462)
T PRK15034        238 ------------------------------SRASIADQLPVLQRLHLWLLSLLY-----LATFGSFIGFSAGFAMLAKTQ  282 (462)
T ss_pred             ------------------------------cccCHHHHHHHhCCCchhHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence                                          111234556789999998755543     344446777788899998774


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhhHhHHHHHHHHHHHHHHH
Q 013992          307 GFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAV  362 (432)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~  362 (432)
                      ..  .........+..+...+.++++|+++||+|+++++.++.+...++...+...
T Consensus       283 ~~--~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~  336 (462)
T PRK15034        283 FP--DVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLT  336 (462)
T ss_pred             cC--hHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHH
Confidence            42  2333333444567788999999999999999999998887776665443333

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.97  E-value=5.6e-30  Score=249.03  Aligned_cols=383  Identities=21%  Similarity=0.223  Sum_probs=265.3

Q ss_pred             eccCCCChhHHHHHHHHHHhhcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccch
Q 013992           20 FSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRR   99 (432)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr   99 (432)
                      .+.++..++++......+.............++..+     ++.-+.+.+...+..+++++|..+|++++|+++||+|||
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-----~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk  148 (521)
T KOG0255|consen   74 NPLNWPSWKKWLLVIVICLDGWVYDYGSSVYSIVSE-----WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRK  148 (521)
T ss_pred             CccccccccccccccccccceeEecCCCCcccccch-----hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccH
Confidence            344455555555444444433333333333333333     444455555559999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHh
Q 013992          100 TSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINL  179 (432)
Q Consensus       100 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~  179 (432)
                      ++++.++++..++.++.++++|++.+++.|++.|++.+........++.|++++++|+.+..+ ......+..+++..++
T Consensus       149 ~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a  227 (521)
T KOG0255|consen  149 PVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAA  227 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999 7777777777777777


Q ss_pred             hccCCCCchHHHHHhhHHHHHHHHHHHhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCch----HHHHHHHHHHhHHHHHH
Q 013992          180 AFTRAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEV----ETEIRDLKESVDKEIEE  255 (432)
Q Consensus       180 ~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~  255 (432)
                      ++..   +||+.+++..+++++.++.+++.||+|||+..+++.+++.+.+++..+.+..    .+..+...  .....+.
T Consensus       228 ~~~~---~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~--~~~~~~~  302 (521)
T KOG0255|consen  228 YITR---DWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLEL--LLRPLKL  302 (521)
T ss_pred             HHHh---hHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHH--HhhHhhh
Confidence            7776   4999999999999988888777789999999999999999998887654311    11111111  1111122


Q ss_pred             ccCccchhHHHhhcccchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 013992          256 EGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYF  335 (432)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l  335 (432)
                      ...+++....++++.+++++.++.....++     .+....+-.+......+.+    ........+.....+....+..
T Consensus       303 ~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~-----~~~~~y~gl~~~~~~lg~~----~~~~~~~~~~~~~p~~~~~~~~  373 (521)
T KOG0255|consen  303 LFTEPKISFLDLFRTPRLRYRTLYLLFIWF-----VFSLVYYGLSLNVSGLGGN----IYLNFTLSGLVELPAYFRNGLL  373 (521)
T ss_pred             hccCCCCchhhhhcCHHHHHHHHHHHHHHH-----HHhHHHHhhhhhhhhcCch----HHHHHHHHHHHHhhHHHHHHHH
Confidence            222333568899999987776666555543     1122211222222222222    3444444555788888888999


Q ss_pred             HhhhCCchhhHhHHHHHHHHHHHHHHHHhccCCCCCccchhcccccccccccccccccccCccchhhhhccCCCCccccc
Q 013992          336 IDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCA  415 (432)
Q Consensus       336 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~g~~~  415 (432)
                      .|+.|||.....+..+..++++...+.......+.......+..++.............|.+|+   ..|..  +.|.++
T Consensus       374 ~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt---~~r~~--~~~~~~  448 (521)
T KOG0255|consen  374 LPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPT---VVRNT--AVGAIS  448 (521)
T ss_pred             HHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccH---HHHHH--HHHHHH
Confidence            9999999999999999999888888776544421122222222222222222223333566666   99999  999888


Q ss_pred             cccccccccccc
Q 013992          416 SHSNKVKGISAI  427 (432)
Q Consensus       416 ~~~~~~~g~~a~  427 (432)
                      ........++..
T Consensus       449 ~~~~~~~i~ap~  460 (521)
T KOG0255|consen  449 AAARLGSILAPL  460 (521)
T ss_pred             HHHHHHHHHHHH
Confidence            877766544433

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.97  E-value=9.9e-30  Score=236.87  Aligned_cols=293  Identities=17%  Similarity=0.124  Sum_probs=212.5

Q ss_pred             HHHHhhcccceeccccchhhhh-hhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHH
Q 013992           35 SAGIGGLLFGYDTGVISGALLY-IRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGA  113 (432)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~  113 (432)
                      ..+++.++...+.....+..|. +.+++|.+..+.   +++.+.+.+++.+++++.|+++||+|||++++.+.++..++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~   81 (366)
T TIGR00886         5 FSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQL---GNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPC   81 (366)
T ss_pred             HHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHh---hHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence            3455556667777888999995 999999999988   999999999999999999999999999999999999999999


Q ss_pred             HHHHHhC-ChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCC--------
Q 013992          114 VIMAAAP-NPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRA--------  184 (432)
Q Consensus       114 ~~~~~~~-~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~--------  184 (432)
                      +++++++ +++.+++.|+++|++.+. .+....++.|++|+++|+++.++......+|..+++.+++.+...        
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~  160 (366)
T TIGR00886        82 LWAGLAVQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLP  160 (366)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccc
Confidence            9999999 999999999999998664 566778999999999999999999877777777777766554431        


Q ss_pred             -CCchHHHH-HhhHHHHHHHHH-HHhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccc
Q 013992          185 -PGTWRWML-GVAGIPALLQFI-LMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEK  261 (432)
Q Consensus       185 -~~~wr~~f-~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (432)
                       ..+||+.| +..++...+..+ .+.+.+|+|+.    +++++..+      ..+..               .+.+++..
T Consensus       161 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~------~~~~~---------------~~~~~~~~  215 (366)
T TIGR00886       161 AHLAWGWAFVIVPAGILLLPALLIFFVGADTPPG----KPATGKLS------FKGAR---------------WSVGTGAL  215 (366)
T ss_pred             ccccccchhHHHHHHHHHHHHHHHHHhcccCCcc----cccchhcc------ccccc---------------ccccchhH
Confidence             11499999 443544443333 35556666531    11000000      00000               00000111


Q ss_pred             hhHHHhhcccchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 013992          262 INLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGR  341 (432)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~  341 (432)
                      ...++.+++++++...+....     ..........+.|.|+++..+.++.+++.......+..++++++.|++.||+++
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~  290 (366)
T TIGR00886       216 GDQLKVFRDRHTWILALLYSV-----TFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGG  290 (366)
T ss_pred             HHHHHHHhccchhhHHHHHHH-----HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhcc
Confidence            144667888877654443222     222445667788889988766667888888888888899999999999999999


Q ss_pred             chhhHhHHHHHHHHHHHHHH
Q 013992          342 KKLLVISLSGVILSLGVLSA  361 (432)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~  361 (432)
                      |+.+..+......+..++..
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~  310 (366)
T TIGR00886       291 ARKLLMSFLGVAMGAFLVVL  310 (366)
T ss_pred             chhHHHHHHHHHHHHHHHHh
Confidence            88877776666665554444

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.97  E-value=8.6e-30  Score=240.35  Aligned_cols=293  Identities=17%  Similarity=0.161  Sum_probs=231.1

Q ss_pred             ChhHHHHHHHHHHhhcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHH
Q 013992           26 NPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVA  105 (432)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~  105 (432)
                      ++.++.....+.+..++..++...+.+.+|.+.+++|.+..+.   ++..+.+.+++.+++++.|+++||+|||++++.+
T Consensus         8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~---~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~   84 (406)
T PRK15402          8 GRQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWV---PTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAG   84 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHH
Confidence            3566777777888888888888889999999999999998888   9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 013992          106 DFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAP  185 (432)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~  185 (432)
                      ..+.+++.+++.++++++.+++.|+++|++.+...+....++.|++|+++|.+..++......+|..++|.+++.+.+..
T Consensus        85 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~  164 (406)
T PRK15402         85 VAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVL  164 (406)
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            99999999999999999999999999999999888888999999999999999999988888899999999999988877


Q ss_pred             CchHHHHHhhHHHHHHHHHH-HhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhH
Q 013992          186 GTWRWMLGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINL  264 (432)
Q Consensus       186 ~~wr~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (432)
                      + ||+.|++.++..++..+. ++..||+++..    +.++                               +.++...+.
T Consensus       165 ~-w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-------------------------------~~~~~~~~~  208 (406)
T PRK15402        165 P-WRGMFVLFAALAALSFFGLWRAMPETAGRV----GEKL-------------------------------SLKELGRDY  208 (406)
T ss_pred             C-ccHHHHHHHHHHHHHHHHHHHhCCCCCccc----cccc-------------------------------cHHHHHHHH
Confidence            6 999999988877766554 45567764210    0000                               000011234


Q ss_pred             HHhhcccchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchh
Q 013992          265 VKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKL  344 (432)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~  344 (432)
                      ++.+++|+++...+.......     .......+.|.++++..+.++.+.+.......++.+++.++.+++.||+++|+.
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~  283 (406)
T PRK15402        209 KLVLKNRRFVAGALALGLVSL-----PLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSL  283 (406)
T ss_pred             HHHHcCcHHHHHHHHHHHHHH-----HHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence            567888887664443222221     233444556777766555666777777777777889999999999999999999


Q ss_pred             hHhHHHHHHHHHHHHHHH
Q 013992          345 LVISLSGVILSLGVLSAV  362 (432)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~  362 (432)
                      +.++.....++..++...
T Consensus       284 ~~~~~~~~~~g~~~~~~~  301 (406)
T PRK15402        284 IRMGLWPMVAGLLLAALA  301 (406)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            888877776666665554

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.97  E-value=3.1e-29  Score=240.09  Aligned_cols=275  Identities=18%  Similarity=0.071  Sum_probs=201.5

Q ss_pred             HHHHHHHHHhhcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHH
Q 013992           30 LRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLF  109 (432)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~  109 (432)
                      ++.+...+...+...++.....+.+|.+.+++|.+..+.   +++.+.+.+++.+++++.|+++||+|||+++..+.+++
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~---g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~  111 (476)
T PLN00028         35 MRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDI---GNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLT  111 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence            445555555566666666778888999999999998888   88899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhcc----CC-
Q 013992          110 FVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFT----RA-  184 (432)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~----~~-  184 (432)
                      +++.++++++++++.+++.|+++|++.+... ....+++|++|+++|++++++......+|..+++.+.+.+.    +. 
T Consensus       112 ~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~  190 (476)
T PLN00028        112 APAVFCMSLVSSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAG  190 (476)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999887654 45567899999999999999988777777776665554432    11 


Q ss_pred             ---CCchHHHHHhhHHHHHHHHHHHhhcCC-CHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCcc
Q 013992          185 ---PGTWRWMLGVAGIPALLQFILMLLLPE-SPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSE  260 (432)
Q Consensus       185 ---~~~wr~~f~~~~~~~~~~~~~~~~~~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (432)
                         ..+||+.|++.+++.++..+..+++++ .|+     ++.++.++                        +.+.++.+.
T Consensus       191 ~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~-----~~~~~~~~------------------------~~~~~~~~~  241 (476)
T PLN00028        191 APSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPD-----GNYRELKK------------------------SGTMPKDSF  241 (476)
T ss_pred             CcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCC-----CchhhHHh------------------------cCccccccH
Confidence               114999999999888777666555543 331     11000000                        000000011


Q ss_pred             chhHHHhhcccchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 013992          261 KINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTG  340 (432)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~  340 (432)
                      ....++.++++++|...+..+     ...........+.|.|+.+..+.+..+++.......++.++++++.|+++||++
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~  316 (476)
T PLN00028        242 SKVLRYGVTNYRTWILALTYG-----YSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAA  316 (476)
T ss_pred             HHHHHHHHcCchhHHHHHHHH-----HHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            123456677887765433221     122233455667888887766666788888888899999999999999999998


Q ss_pred             Cc
Q 013992          341 RK  342 (432)
Q Consensus       341 ~~  342 (432)
                      ||
T Consensus       317 ~r  318 (476)
T PLN00028        317 RR  318 (476)
T ss_pred             Hh
Confidence            65

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.97  E-value=5.7e-31  Score=246.32  Aligned_cols=277  Identities=17%  Similarity=0.128  Sum_probs=211.4

Q ss_pred             hhcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHH
Q 013992           39 GGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAA  118 (432)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~  118 (432)
                      +++..++++...+...|.+.+++|.+..+.   +++.+++.++..+++++.|+++||+|||++++.+.++.+++.++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~---g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~   79 (379)
T TIGR00881         3 GYAAYYLVRKNFALAMPYLVEEIGLSKTDL---GLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGF   79 (379)
T ss_pred             hhhHHHHhHHhhhhhhHHHHHHhCCCHhHH---HHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHH
Confidence            345667788888999999999999998888   99999999999999999999999999999999999999999999999


Q ss_pred             hCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHH-HHHhhccCCCCchHHHHHhhHH
Q 013992          119 APNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSY-LINLAFTRAPGTWRWMLGVAGI  197 (432)
Q Consensus       119 ~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~-~i~~~l~~~~~~wr~~f~~~~~  197 (432)
                      +++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++ .++..+.+..+ ||+.|++.++
T Consensus        80 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~  158 (379)
T TIGR00881        80 STSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYS-WHWVFIVPGI  158 (379)
T ss_pred             hhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCC-chhHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999 56666666666 9999998887


Q ss_pred             HHHHHHHH-HhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhHHHhhcccchhHH
Q 013992          198 PALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRG  276 (432)
Q Consensus       198 ~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (432)
                      +.++..+. +++.||+|+....+..+++..         .+.+        ..+++++++.+..+...++.++++.++..
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (379)
T TIGR00881       159 IAIIVSLICFLLLRDSPQSCGLPPAEEMPN---------EEPD--------GDAEKKEEELTKKQIFLQYVLLNKVLWYI  221 (379)
T ss_pred             HHHHHHHHHheeeCCCccccccCccccCcc---------cccc--------cccccccccccchHHHHHHHHhcchHHHH
Confidence            76665444 556677653211000000000         0000        00000011111222345667788877664


Q ss_pred             HHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 013992          277 LIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGR  341 (432)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~  341 (432)
                      .+..+...     ........+.|.|+++..+.++.+.+.......++.+++.++.+++.||..+
T Consensus       222 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~  281 (379)
T TIGR00881       222 SLGYVFVY-----VVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFN  281 (379)
T ss_pred             HHHHHHHH-----HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcC
Confidence            44333322     2456677788999887766667888888888899999999999999998643

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.97  E-value=2.9e-28  Score=228.15  Aligned_cols=271  Identities=17%  Similarity=0.134  Sum_probs=208.0

Q ss_pred             HHHHHHHHHHhhcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHH
Q 013992           29 VLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFL  108 (432)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~  108 (432)
                      .|+.+..+.++.+..........+.+|.+.+++|.++.+.   ++..+.+.++..+++++.|+++||+|||++++.+.++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~---g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~   94 (394)
T PRK10213         18 NWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVA---GQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVL   94 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHH
Confidence            4555555555545444455556667899999999999888   9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCch
Q 013992          109 FFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTW  188 (432)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~w  188 (432)
                      .+++.+++++++|++.+++.|+++|++.+...+...+++.|++|+|+|+++.++...+.++|..++|.+++.+.+..+ |
T Consensus        95 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~g-w  173 (394)
T PRK10213         95 LTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIG-W  173 (394)
T ss_pred             HHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-H
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999998887 9


Q ss_pred             HHHHHhhHHHHHHHHHH-HhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhHHHh
Q 013992          189 RWMLGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKL  267 (432)
Q Consensus       189 r~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (432)
                      |+.|++.++++++..+. ....||+|+.     +                                    ++...+.++.
T Consensus       174 ~~~f~~~~~l~~~~~l~~~~~~p~~~~~-----~------------------------------------~~~~~~~~~~  212 (394)
T PRK10213        174 RNVFNAAAVMGVLCIFWIIKSLPSLPGE-----P------------------------------------SHQKQNTFRL  212 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCcc-----c------------------------------------ccchhHHHHH
Confidence            99999988766655444 3345665310     0                                    0001123567


Q ss_pred             hcccchhHHHHHHHHHHHHhhhcchHHHHHhH-HHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhhH
Q 013992          268 LKTRTVRRGLIAGVGLQVFQQFVGINTVMYYS-PTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLV  346 (432)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~  346 (432)
                      +++|.++...+..+...     ........+. |.+.++. +.+....+.......++.+++.++.+++.||.+ |+.+.
T Consensus       213 l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~p~~~~~~-g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~  285 (394)
T PRK10213        213 LQRPGVMAGMIAIFMSF-----AGQFAFFTYIRPVYMNLA-GFGVDGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALA  285 (394)
T ss_pred             hcCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhc-CCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHH
Confidence            78888766444322221     1233333444 6666555 444667788788888899999999999999954 44444


Q ss_pred             hHHHH
Q 013992          347 ISLSG  351 (432)
Q Consensus       347 ~~~~~  351 (432)
                      .+..+
T Consensus       286 ~~~~~  290 (394)
T PRK10213        286 GAPLV  290 (394)
T ss_pred             HHHHH
Confidence            44333

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.97  E-value=4.3e-29  Score=233.35  Aligned_cols=278  Identities=14%  Similarity=0.157  Sum_probs=219.5

Q ss_pred             HHHHHHhhcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHH
Q 013992           33 AFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVG  112 (432)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~  112 (432)
                      +..+.+..+..+.......+.+|.+.+|+|.+..+.   +++.+.+.+++.+++++.|+++||+|||+++..+..+.+++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~---g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~   81 (382)
T PRK10091          5 ILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAA---GHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIG   81 (382)
T ss_pred             HHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHH---hHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHH
Confidence            344555667777777788889999999999998888   99999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHH
Q 013992          113 AVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWML  192 (432)
Q Consensus       113 ~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f  192 (432)
                      .+++++++|++.+++.|+++|++.+...+....++.|++|+++|++++++...+..+|..+++.+++++.+..+ ||+.|
T Consensus        82 ~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g-wr~~f  160 (382)
T PRK10091         82 NAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFS-WRYTF  160 (382)
T ss_pred             HHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhcc-HHHHH
Confidence            99999999999999999999999998888888899999999999999999999999999999999999988777 99999


Q ss_pred             HhhHHHHHHHHHH-HhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhHHHhhccc
Q 013992          193 GVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTR  271 (432)
Q Consensus       193 ~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (432)
                      ++.++..++..+. ++++||.++    +.+.                                     +..+..+.++++
T Consensus       161 ~~~~~~~~~~~~~~~~~lp~~~~----~~~~-------------------------------------~~~~~~~~~~~~  199 (382)
T PRK10091        161 LLIAVFNIAVLASIYFWVPDIRD----EAKG-------------------------------------GLREQFHFLRSP  199 (382)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCc----cccc-------------------------------------CHHHHHHHhcCh
Confidence            9988876665554 556777531    0000                                     000112345555


Q ss_pred             chhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhhHhHHHH
Q 013992          272 TVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSG  351 (432)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~  351 (432)
                      +.+.......     ...........+.+.++++..+.++.+.+.......++.++++++.+++.||+++|+.+..+..+
T Consensus       200 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~  274 (382)
T PRK10091        200 APWLIFAATM-----FGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFI  274 (382)
T ss_pred             HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHH
Confidence            5544222211     11112333344556676665566677888888888999999999999999999999998888777


Q ss_pred             HHHHHHHHH
Q 013992          352 VILSLGVLS  360 (432)
Q Consensus       352 ~~~~~~~~~  360 (432)
                      ..++.+++.
T Consensus       275 ~~i~~~~~~  283 (382)
T PRK10091        275 IVLALLMLF  283 (382)
T ss_pred             HHHHHHHHH
Confidence            666655443

>PRK10133 L-fucose transporter; Provisional

Probab=99.97  E-value=2.9e-29  Score=237.34  Aligned_cols=297  Identities=12%  Similarity=0.069  Sum_probs=219.8

Q ss_pred             eccCCCChhHHHHHHHHHHhhcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccch
Q 013992           20 FSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRR   99 (432)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr   99 (432)
                      +++...++.....+..+++..+..+++....++..|.+.+++|.++.+.   +++.+.+.+++.+++++.|++.||+|||
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~---gl~~~~~~~g~~i~~~~~g~l~dr~G~r   91 (438)
T PRK10133         15 DKDAGQSRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQA---GLIQSAFYFGYFIIPIPAGILMKKLSYK   91 (438)
T ss_pred             CCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCcH
Confidence            3333334445556666777778888889999999999999999998888   9999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH---HHhCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHH
Q 013992          100 TSILVADFLFFVGAVIM---AAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYL  176 (432)
Q Consensus       100 ~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~  176 (432)
                      +++..+..++.++.+++   .++++++.++++|+++|++.+...+....++.|+.|+++|.+.++..+..+.+|..+++.
T Consensus        92 ~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~  171 (438)
T PRK10133         92 AGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVV  171 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999875   568999999999999999999999999999999887777777899999999999999999


Q ss_pred             HHhhccC-C-----------------C-------CchHHHHHhhH-HHHHHHHHH-HhhcCCCHHHHHHcCCHHHHHHHH
Q 013992          177 INLAFTR-A-----------------P-------GTWRWMLGVAG-IPALLQFIL-MLLLPESPRWLYRKGREEEAQAIL  229 (432)
Q Consensus       177 i~~~l~~-~-----------------~-------~~wr~~f~~~~-~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~  229 (432)
                      +++.+.. .                 .       .+||+.|+... +..++..+. ...+||.++    + +.       
T Consensus       172 ~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~----~-~~-------  239 (438)
T PRK10133        172 FGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS----D-NH-------  239 (438)
T ss_pred             HHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc----c-cc-------
Confidence            8875431 0                 0       13666665433 333332222 223444211    0 00       


Q ss_pred             HHhCCCCchHHHHHHHHHHhHHHHHHccCccchhHHHhhcccchhHHHHHHHHHHHHhhhcchHHHHHhHHHHH-HHcCC
Q 013992          230 RKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIV-QLSGF  308 (432)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  308 (432)
                                             .+++..+...+.++++++|+++...+..++     ..........|.+.|+ ++..+
T Consensus       240 -----------------------~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~l~~~~~g  291 (438)
T PRK10133        240 -----------------------SDAKQGSFSASLSRLARIRHWRWAVLAQFC-----YVGAQTACWSYLIRYAVEEIPG  291 (438)
T ss_pred             -----------------------ccccccchhhhHHHHHhCchHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhhcCC
Confidence                                   000001112234577888888764433222     2224444556777774 55667


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhhHhHHHHHHHHHHHH
Q 013992          309 ASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVL  359 (432)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~  359 (432)
                      .++..++.......++.++++++++++.||+++|+.+..+..+..+.+.+.
T Consensus       292 ~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~  342 (438)
T PRK10133        292 MTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLIS  342 (438)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence            778899999999999999999999999999999999888766665554443

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.97  E-value=4.7e-31  Score=244.37  Aligned_cols=341  Identities=23%  Similarity=0.284  Sum_probs=243.7

Q ss_pred             HHhhcccceeccccchhhh-hhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHH
Q 013992           37 GIGGLLFGYDTGVISGALL-YIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVI  115 (432)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~  115 (432)
                      +++.+...++.....+.+| .+.+++|.+..+.   +++.+.+.++..+++++.|+++||+|||++++.+.++.+++.++
T Consensus         2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~   78 (352)
T PF07690_consen    2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQI---GLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLL   78 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCH---HHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHH
Confidence            3455666777777888999 8999999999998   99999999999999999999999999999999999999999777


Q ss_pred             HHHhCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhh
Q 013992          116 MAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVA  195 (432)
Q Consensus       116 ~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~  195 (432)
                      ..+++|.+.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..+++.+++.+.+..+ ||+.|++.
T Consensus        79 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~-~~~~~~~~  157 (352)
T PF07690_consen   79 LAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFG-WRWAFLIS  157 (352)
T ss_dssp             HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCH-HCCHHHHH
T ss_pred             hhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccc-cccccccc
Confidence            77778888999999999999999999999999999999999999999999999999999999999997776 99999999


Q ss_pred             HHHHHHHHHH-HhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccch-hHHHhhcccch
Q 013992          196 GIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKI-NLVKLLKTRTV  273 (432)
Q Consensus       196 ~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  273 (432)
                      ++..++..++ ..+++++|+...++++.++.                             ++++++.. ..++..+++.+
T Consensus       158 ~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~  208 (352)
T PF07690_consen  158 AILSLIAAILFILFLPEPPPPRERESPKESE-----------------------------SKKPKPLKPGFKSLFKNPVL  208 (352)
T ss_dssp             HHHHHHHHHHHHCCC---STTTT--SSTTTT-------------------------------HHHCCCH-CTHHHHHHCC
T ss_pred             cchhhhhhhhHhhhhhhcccccccccccccc-----------------------------cccccccccccccccccchh
Confidence            9888887765 45555543211000000000                             00001111 24566666666


Q ss_pred             hHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhhHhHHHHH
Q 013992          274 RRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFAS-NRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGV  352 (432)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~  352 (432)
                      |...+..+..     ...+.....+.|.|+++..+.+ ..+.+.......+..+++.++.+++.||+++|+.........
T Consensus       209 ~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  283 (352)
T PF07690_consen  209 WILLIAFFLF-----FFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLL  283 (352)
T ss_dssp             HHHHHHHHHH-----HHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhhhhhhhHH-----HHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence            5222222222     2245567788888865555555 677887888888889999999999999999987777766666


Q ss_pred             HHHHHHHHHHHhccCCCCCccchhcccccccccccccccccccCccchhhhhccCCCCcccccccccc
Q 013992          353 ILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNK  420 (432)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~g~~~~~~~~  420 (432)
                      .+....+.......+........++.+.+.....+.......+   ..|++.|++  ..|+.+...+.
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~~g~--~~g~~~~~~~~  346 (352)
T PF07690_consen  284 ILGALGLLLLPFSSSPVWLIIALFLIGFGFGIVFPILFSLIQE---LVPPEYRGT--AFGLFNSIGSL  346 (352)
T ss_dssp             HHHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHC---CCHTCHHHH--HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCHHHHHH--HHHHHHHHHHH
Confidence            6655555444433222222223333444333333333333344   445588988  88877655443

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.97  E-value=6e-35  Score=279.48  Aligned_cols=375  Identities=33%  Similarity=0.533  Sum_probs=267.9

Q ss_pred             Hhhcccceeccccchhhhhhh--hccccchh------hhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHH
Q 013992           38 IGGLLFGYDTGVISGALLYIR--DDFKSVDR------KTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLF  109 (432)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~------~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~  109 (432)
                      ++.+..++|....+...+...  .++..+..      +..+.++..+...+|..+|+++.|.++||+|||++++.+.++.
T Consensus         7 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~   86 (451)
T PF00083_consen    7 LGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLM   86 (451)
T ss_pred             HHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhccccccccccccccccccccccccccc
Confidence            344667777776666555544  22222111      2234588999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhC---ChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCC-
Q 013992          110 FVGAVIMAAAP---NPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAP-  185 (432)
Q Consensus       110 ~~~~~~~~~~~---~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~-  185 (432)
                      .++.++.++++   |++.+.++|+++|++.|...+....++.|..|+++|++..++.+....+|..++..++..+.+.. 
T Consensus        87 ~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~  166 (451)
T PF00083_consen   87 IIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSD  166 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999   99999999999999999999999999999999999999999999999999999888876653322 


Q ss_pred             -CchHHHHHhhHHHHHHHHHHHhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhH
Q 013992          186 -GTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINL  264 (432)
Q Consensus       186 -~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (432)
                       ..||+.+.+.++++++..+..+++||||+|+.++++.||+++.+++.++.+..+++.++..+..     ++.++++...
T Consensus       167 ~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~  241 (451)
T PF00083_consen  167 NWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEK-----KESQESKASW  241 (451)
T ss_pred             cccccccccccccccccccccccccccccceeccccccccccccccccccccccccccccccccc-----ccccccceee
Confidence             1499999999999988888888899999999999999999988887554432222221111111     1111111456


Q ss_pred             HHhhcccchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchh
Q 013992          265 VKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKL  344 (432)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~  344 (432)
                      ++++++++.++..+..+.+..+.+..+.....++.+.+++..+..++   ........+...++.+++.++.||+|||+.
T Consensus       242 ~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~  318 (451)
T PF00083_consen  242 RDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS---FLATLILGLVNFLGTLLAIFLIDRFGRRKL  318 (451)
T ss_pred             eeccccccccccccccccccccccccccccccccccccccccccccc---cccccccccccccccccccccccccccccc
Confidence            77777766555556656666666666667777777877777665544   233344556677888888899999999999


Q ss_pred             hHhHHHHHHHHHHHHH--HHHhccC----CC-CCccchhcccccccccccccccccccCccchhhhhccCCCCccccccc
Q 013992          345 LVISLSGVILSLGVLS--AVFHETT----SH-SPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASH  417 (432)
Q Consensus       345 ~~~~~~~~~~~~~~~~--~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~g~~~~~  417 (432)
                      ++.+.....++...+.  .......    .. ......+....+.....+.......|.+|+   +.|++  +.|++...
T Consensus       319 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt---~~R~~--~~~~~~~~  393 (451)
T PF00083_consen  319 LIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPT---KVRST--GIGLSYAV  393 (451)
T ss_pred             cccccccccccccccccccccccccccccccccceeeeeccccccccccccccccccccccc---ccccc--cccccccc
Confidence            9998888877776664  1111111    11 111111111122222222332344677766   99999  99999998


Q ss_pred             cccccccc
Q 013992          418 SNKVKGIS  425 (432)
Q Consensus       418 ~~~~~g~~  425 (432)
                      ......+.
T Consensus       394 ~~i~~~i~  401 (451)
T PF00083_consen  394 GRIGGFII  401 (451)
T ss_pred             cccccccc
Confidence            87655444

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.97  E-value=8.6e-32  Score=239.60  Aligned_cols=281  Identities=19%  Similarity=0.253  Sum_probs=224.4

Q ss_pred             CCChhHHHHHHHHHHhhcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHH
Q 013992           24 WKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSIL  103 (432)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~  103 (432)
                      ...+..++.+.++++..+++..|+..+..+++.+.+.||+++...   |++.+.+.+.+++.+|+.|+++|||+||+++.
T Consensus        26 ~~~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~---Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~  102 (493)
T KOG1330|consen   26 LSMKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSEL---GLLQTVFIVVFMIASPLFGYLADRYNRKRVIA  102 (493)
T ss_pred             cccccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhc---cchhHHHHHHHHHHHHHHHHHHhhcCcceEEe
Confidence            345566778889999999999999999999999999999999999   99999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccC
Q 013992          104 VADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTR  183 (432)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~  183 (432)
                      .|..++.++.++++++..+|+++++|.+.|+|.+.+.|.++++++|.+|.++|++++++++.+..+|..+|.+++..+.+
T Consensus       103 vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~  182 (493)
T KOG1330|consen  103 VGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVAS  182 (493)
T ss_pred             eHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCchHHHHHhhHHHHHHHHHH-HhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccch
Q 013992          184 APGTWRWMLGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKI  262 (432)
Q Consensus       184 ~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (432)
                      ..+.|||.|+..++++++..++ .++.+|++|     +..++.+.                      +.+..+...+..+
T Consensus       183 ~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~r-----ga~~~~~~----------------------~~~~~~~~ts~~k  235 (493)
T KOG1330|consen  183 LTFWWRWAFRGSAVLGVIVGLLVFLFVREPER-----GARDEVDG----------------------ENKMVKPFTSVWK  235 (493)
T ss_pred             CccceEEEEEeehHHHHHHHHHHHhhccCccc-----cccccccc----------------------CCcCCCCccchHH
Confidence            8777999999999999988877 555666643     11111000                      0000011222344


Q ss_pred             hHHHhhcccchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHc---CCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013992          263 NLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLS---GFASNRTALLLSLVTSGLNAAGSIVSIYFIDRT  339 (432)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~  339 (432)
                      +.+.+.|++.+....+......+     ..+.+.+|.|.+....   .+.+......+..+...++.+|.+++|.++||+
T Consensus       236 Dl~~l~~~~v~v~~sl~~~a~~f-----v~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~  310 (493)
T KOG1330|consen  236 DLKVLAKIKVFVLSSLGIIAAQF-----VIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKL  310 (493)
T ss_pred             HHHHHHccCceeeehHHHHHHHH-----hccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHH
Confidence            55566666666554444333333     3444555555554332   223344566777778889999999999999995

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.97  E-value=4.3e-30  Score=239.16  Aligned_cols=338  Identities=10%  Similarity=-0.016  Sum_probs=241.3

Q ss_pred             HhhcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHH
Q 013992           38 IGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMA  117 (432)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~  117 (432)
                      ++.++..+......+.+|.+..+++.+..+.   +++.+++.++..+++++.|+++||+|||++++.+.++..++.++..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~---g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~   82 (365)
T TIGR00900         6 AAQLISLIGTAITQVALPLYVLAGTGSASVL---SLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLP   82 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccHHHH---HHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHH
Confidence            4455666667778888899999998888777   9999999999999999999999999999999999999999888888


Q ss_pred             HhC-----ChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHH
Q 013992          118 AAP-----NPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWML  192 (432)
Q Consensus       118 ~~~-----~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f  192 (432)
                      +.+     |++.+++.|+++|++.+...+...+++.|++|+++|++++++.+....+|..+++.+++.+.+..+ ||+.|
T Consensus        83 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g-~~~~~  161 (365)
T TIGR00900        83 FVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLG-IKWAI  161 (365)
T ss_pred             HHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHH
Confidence            877     999999999999999999999999999999999999999999999999999999999999988776 99999


Q ss_pred             HhhHHHHHHHHHHHhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhHHHhhcccc
Q 013992          193 GVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRT  272 (432)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (432)
                      ++.++..++..+..+.++++++   ++.+.++.+            ++           ..+    +.....++.+|+|.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~------------~~-----------~~~----~~~~~~~~~~~~~~  211 (365)
T TIGR00900       162 WVDAVGFAISALLIVSVRIPEL---AASEIQALS------------NA-----------VLR----DTREGIKFVLKNPL  211 (365)
T ss_pred             HHHHHHHHHHHHHHHhcccccC---CCccccccc------------hh-----------HHH----HHHhHHHHHHcCcH
Confidence            9888766665555444322210   000000000            00           000    01123456677887


Q ss_pred             hhHHHHHHHHHHHHhhhcchHHHH-HhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhhHhHHHH
Q 013992          273 VRRGLIAGVGLQVFQQFVGINTVM-YYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSG  351 (432)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~  351 (432)
                      ++...+..+....     ...... .+.|.+.++..+.++.+.+.......++.+++.++.+++.||.+||+.+..+..+
T Consensus       212 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  286 (365)
T TIGR00900       212 LRTLLLLALLFNL-----VFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFV  286 (365)
T ss_pred             HHHHHHHHHHHHH-----HHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHH
Confidence            7654444332222     233333 6778888875566677888888888999999999999999999999988877666


Q ss_pred             HHHHHHHHHHHHhccCCCCCccchhcccccccccccccccccccCccchhhhhccCCCCccccccccccc
Q 013992          352 VILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKV  421 (432)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~g~~~~~~~~~  421 (432)
                      ..++...+.....  +.+...+..+..+++.....+.....   ....+|++.|++  ..|+.....+..
T Consensus       287 ~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~g~--~~~~~~~~~~~~  349 (365)
T TIGR00900       287 IGLAILVVGLTPP--NFPLFLVLWFAIGVGYGPINVPQGTL---LQRRVPAELLGR--VFGAQFSLSHAA  349 (365)
T ss_pred             HHHHHHHHHhhch--hHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhCCHHHHHH--HHHHHHHHHHHH
Confidence            6665554444321  12222222333333332222222222   233455689999  888877665544

>PRK03699 putative transporter; Provisional

Probab=99.97  E-value=3.5e-28  Score=228.18  Aligned_cols=283  Identities=13%  Similarity=0.123  Sum_probs=217.2

Q ss_pred             hHHHHHHHHHHhhcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHH
Q 013992           28 YVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADF  107 (432)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~  107 (432)
                      .|++.....++..+..+.+....++.+|.+.+++|.+..+.   +++.+.+.+++.+++++.|++.||+|||++++.+.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~---g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~   80 (394)
T PRK03699          4 NRIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSM---SNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFA   80 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            44556666677778888888889999999999999998888   999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCc
Q 013992          108 LFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGT  187 (432)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~  187 (432)
                      +..++.++++++++++.+++.|+++|++.+...+....++.|++|+++|+++++..+....+|..++|.+.+.+.+...+
T Consensus        81 ~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~g  160 (394)
T PRK03699         81 LMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIE  160 (394)
T ss_pred             HHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            99999999999999999999999999999988888899999999999999999998888889999999888877653324


Q ss_pred             hHHHHHhhHHHHHHHHHHHhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhHHHh
Q 013992          188 WRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKL  267 (432)
Q Consensus       188 wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (432)
                      ||+.|.+.+++.++..++.++ .+.|+.   + +.++                             +++++.    .++ 
T Consensus       161 w~~~f~~~~~~~~~~~~~~~~-~~~p~~---~-~~~~-----------------------------~~~~~~----~~~-  201 (394)
T PRK03699        161 WYWVYACIGLVYVAIFILTLF-SEFPAL---G-KHAP-----------------------------KADKPV----AKE-  201 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh-cCCccc---c-ccCc-----------------------------cccCcc----ccc-
Confidence            999999888776665554333 222210   0 0000                             000000    000 


Q ss_pred             hcccchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhhHh
Q 013992          268 LKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVI  347 (432)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~  347 (432)
                      ..++.++.     .....++.....+....|.|.|+++..+.+..+.+.......++..+++++.++++||+++|+.+..
T Consensus       202 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~  276 (394)
T PRK03699        202 KWGIGVLF-----LAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTV  276 (394)
T ss_pred             cCChHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHH
Confidence            01222222     2222233333456777899999987766777788888888888999999999999999999998877


Q ss_pred             HHHHHHHHHH
Q 013992          348 SLSGVILSLG  357 (432)
Q Consensus       348 ~~~~~~~~~~  357 (432)
                      ...+..+.+.
T Consensus       277 ~~~~~~~~~~  286 (394)
T PRK03699        277 LAGLALVLMY  286 (394)
T ss_pred             HHHHHHHHHH
Confidence            6655554433

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.97  E-value=2.4e-28  Score=229.97  Aligned_cols=269  Identities=14%  Similarity=0.193  Sum_probs=213.9

Q ss_pred             HHHHHHhhcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHH
Q 013992           33 AFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVG  112 (432)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~  112 (432)
                      ...+.+..+...++.....+.+|.+.++++.+..+.   ++..+++.+++.+++++.|+++||+|||++++.+.++++++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~---~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~   94 (413)
T PRK15403         18 PMALILYDFAAYLTTDLIQPGIINVVRDFNADVSLA---PASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLA   94 (413)
T ss_pred             HHHHHHHHHHHHHHHHhhccCHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHH
Confidence            334455666777888899999999999999988888   99999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHH
Q 013992          113 AVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWML  192 (432)
Q Consensus       113 ~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f  192 (432)
                      .+++++++|++.++++|+++|++.+...+....++.|++|+++|++++++......+|..++|.+++.+.+..+ ||+.|
T Consensus        95 ~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~g-w~~~f  173 (413)
T PRK15403         95 CAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVH-WKVLF  173 (413)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-HHHHH
Confidence            99999999999999999999999887777777889999999999999999999999999999999999887776 99999


Q ss_pred             HhhHHHHHHHHHH-HhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhHHHhhccc
Q 013992          193 GVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTR  271 (432)
Q Consensus       193 ~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (432)
                      ++.++..++..+. ++.+||+++.   +++..                                +.+....+.++.+|||
T Consensus       174 ~~~~~~~~i~~~~~~~~lp~~~~~---~~~~~--------------------------------~~~~~~~~~~~ll~~~  218 (413)
T PRK15403        174 AIIAVMGLIAFVGLLLAMPETVKR---GAVPF--------------------------------SAKSVLRDFRNVFRNR  218 (413)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCccc---cCCCC--------------------------------ChHHHHHHHHHHHcCH
Confidence            9998877776655 5567887420   00000                                0000122456788998


Q ss_pred             chhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhh
Q 013992          272 TVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLL  345 (432)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~  345 (432)
                      .++...+.....     .........+.|.++++..+.++.+.++...+...+.+++..+.+.+.++..+++..
T Consensus       219 ~~~~~~l~~~~~-----~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~  287 (413)
T PRK15403        219 LFLTGAATLSLS-----YIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFI  287 (413)
T ss_pred             HHHHHHHHHHHH-----HHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHH
Confidence            887755443222     224456666789999988777788888888877788888888888776554444443

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.96  E-value=5.9e-29  Score=236.54  Aligned_cols=289  Identities=14%  Similarity=0.071  Sum_probs=209.7

Q ss_pred             HHHHHHHHHHhhcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHH
Q 013992           29 VLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFL  108 (432)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~  108 (432)
                      ++..+....+.....+.++.......|.+.+ +|.++.+.   +++.+++.++..+++++.|+++||+|||++++.+.++
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~---g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~  100 (438)
T TIGR00712        25 RWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGEL---GFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL  100 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHh---HHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHH
Confidence            4555666666677777777777777888776 58888888   9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHh----CChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCC
Q 013992          109 FFVGAVIMAAA----PNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRA  184 (432)
Q Consensus       109 ~~~~~~~~~~~----~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~  184 (432)
                      .+++.++.++.    ++++.+.+.|++.|++.+...+.....+.|++|+++|++++++.+.+..+|..+++.+.+...+.
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~  180 (438)
T TIGR00712       101 SAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAW  180 (438)
T ss_pred             HHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence            99998887764    46778889999999999998888889999999999999999999999999999988777654443


Q ss_pred             CCchHHHHHhhHHHHHHHHHH-HhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchh
Q 013992          185 PGTWRWMLGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKIN  263 (432)
Q Consensus       185 ~~~wr~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (432)
                      ..+||+.|++.++.+++..+. ++++||+|+....+ +.++.++       +.. +.        ..++.+++.+.++..
T Consensus       181 ~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~-------~~~-~~--------~~~~~~~~~~~~~~~  243 (438)
T TIGR00712       181 FNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLP-PIEEYRN-------DYP-DD--------YNEKAEQELTAKEIF  243 (438)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCC-Cchhccc-------ccc-cc--------cccccccccchHHHH
Confidence            224999999988877775544 66678876531100 0000000       000 00        000000000001111


Q ss_pred             HHHhhcccchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCch
Q 013992          264 LVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKK  343 (432)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~  343 (432)
                      .+..+|++.++...+...+.     +...+....+.|.|+++..+.++..++....+..+..+++.++.|++.||+++++
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~  318 (438)
T TIGR00712       244 MQYVLPNKLLWYIAIANVFV-----YLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGN  318 (438)
T ss_pred             HHHHccCchHHHHHHHHHHH-----HHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence            23467888777654433222     2245667788999999876666777888888888899999999999999996543

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.96  E-value=5.4e-28  Score=227.42  Aligned_cols=328  Identities=19%  Similarity=0.195  Sum_probs=220.6

Q ss_pred             cccceeccccchhhhhhhhcccc--chhhhHHHHHHH-----HHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHH
Q 013992           41 LLFGYDTGVISGALLYIRDDFKS--VDRKTLLQESIV-----SMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGA  113 (432)
Q Consensus        41 ~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~-----s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~  113 (432)
                      +.+++|+..++...+.+.+++..  ++++.   +.+.     +...++..+++++.|+++||+|||++++.+.++..++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~   79 (394)
T TIGR00883         3 AVEWFDFYLYGFAAVLVFHTFFPPSGDPLV---ALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGT   79 (394)
T ss_pred             chhHHHHHHHHHHHHHHHHHhcCCCCChHH---HHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            55677888888888888887653  23222   3322     23334445789999999999999999999999999999


Q ss_pred             HHHHHhCChh--------HHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccC--
Q 013992          114 VIMAAAPNPG--------ALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTR--  183 (432)
Q Consensus       114 ~~~~~~~~~~--------~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~--  183 (432)
                      ++++++++++        .+++.|+++|++.+...+....++.|++|+++|++..+....+..+|..+++.++..+..  
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~  159 (394)
T TIGR00883        80 LLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLL  159 (394)
T ss_pred             HHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999876        478899999999999999999999999999999999999999999999999988765532  


Q ss_pred             ------CCCchHHHHHhhHHHHHHHHHHHhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHcc
Q 013992          184 ------APGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEG  257 (432)
Q Consensus       184 ------~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (432)
                            ..+ ||+.|++.++..++........||+|++..+                                   ++++
T Consensus       160 ~~~~~~~~~-w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~  203 (394)
T TIGR00883       160 GDDALLEWG-WRIPFLVSAVLVLIGLYLRRNLEETPVFEKA-----------------------------------QEKH  203 (394)
T ss_pred             CHHHhhccc-hHHHHHHHHHHHHHHHHHHHhcCCChhHHHH-----------------------------------Hhcc
Confidence                  334 9999998887766666555666776532110                                   0011


Q ss_pred             CccchhHHHhhcccc--hhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 013992          258 SSEKINLVKLLKTRT--VRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYF  335 (432)
Q Consensus       258 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l  335 (432)
                      ++.+.+.++.+++++  ++....     ..+...........+.|.|.++..+.+..+.+.......+..+++.++.|++
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l  278 (394)
T TIGR00883       204 KKKRGPIRETLTKHRKPFLLGLG-----LVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGAL  278 (394)
T ss_pred             ccccCCHHHHHHhchHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            112233455566554  322121     2222233456667788999876666667777888888888999999999999


Q ss_pred             HhhhCCchhhHhHHHHHHHHH-HHHHHHHhccCCCCCccchhcccccccccccccccccccCccchhhhhccCCCCcccc
Q 013992          336 IDRTGRKKLLVISLSGVILSL-GVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFC  414 (432)
Q Consensus       336 ~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~g~~  414 (432)
                      .||++||+.+.....+..+.. ..+.......+.+......+..+.+.....+.......|..|   ++.|++  +.|+.
T Consensus       279 ~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p---~~~~~~--~~~~~  353 (394)
T TIGR00883       279 SDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFP---TEVRYT--GASLA  353 (394)
T ss_pred             HHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCC---ccceee--Eeeeh
Confidence            999999987775544443332 222222212222222222222333222222233333344444   488999  88876


Q ss_pred             ccc
Q 013992          415 ASH  417 (432)
Q Consensus       415 ~~~  417 (432)
                      .+.
T Consensus       354 ~~~  356 (394)
T TIGR00883       354 YNL  356 (394)
T ss_pred             hHh
Confidence            443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.96  E-value=5.4e-28  Score=213.89  Aligned_cols=291  Identities=17%  Similarity=0.186  Sum_probs=241.0

Q ss_pred             hhHHHHHHHHHHhhcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHH
Q 013992           27 PYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVAD  106 (432)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~  106 (432)
                      +.+++.+....+...+....+...+++.+.+.+++|++++|.   +++.++..+...+..++.|.+.||||.|++...+.
T Consensus        10 ~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~---~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~   86 (417)
T COG2223          10 RIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQK---GLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSM   86 (417)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHH---HHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHH
Confidence            334555666666667777888899999999999999999999   99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCChh---HHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccC
Q 013992          107 FLFFVGAVIMAAAPNPG---ALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTR  183 (432)
Q Consensus       107 ~~~~~~~~~~~~~~~~~---~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~  183 (432)
                      ++..+-++..+++.+.+   ++++.+.+.|++.+ .+.....++++|+|||++|.++|++. ..++|..+..++++.+..
T Consensus        87 ~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~Ga-sFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~  164 (417)
T COG2223          87 LLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGA-SFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAV  164 (417)
T ss_pred             HHHHHHHHHHHHHccCCchHHHHHHHHHHhcccc-eehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHH
Confidence            99999999999986555   99999999999865 67788899999999999999999999 888899888888888777


Q ss_pred             CCC--chHHHHHhhHHHHHHHHHH-HhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCcc
Q 013992          184 APG--TWRWMLGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSE  260 (432)
Q Consensus       184 ~~~--~wr~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (432)
                      ..+  .||....+..+..++..+. ++.+.|.|..                                      +...++.
T Consensus       165 ~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~--------------------------------------r~~~~~~  206 (417)
T COG2223         165 AFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEH--------------------------------------RASVKPQ  206 (417)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhh--------------------------------------hcccccc
Confidence            655  3999988888877776666 6666666531                                      0111111


Q ss_pred             c-hhHHHhhcccchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013992          261 K-INLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRT  339 (432)
Q Consensus       261 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~  339 (432)
                      . ...+.++++++.|...+.     ++..+.++..+..++|.|++++.+.++.+++.......+.+.+.++.+|+++||+
T Consensus       207 ~~~~~~~v~~~~~~W~lsll-----Y~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~  281 (417)
T COG2223         207 LPAQLKAVFSNKDTWLLSLL-----YFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI  281 (417)
T ss_pred             chhHHHHHhcCcchHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhc
Confidence            1 456678889999885554     3444557888999999999999999999999999999999999999999999999


Q ss_pred             CCchhhHhHHHHHHHHHHHHHHHHhc
Q 013992          340 GRKKLLVISLSGVILSLGVLSAVFHE  365 (432)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (432)
                      |.+|.....+..++++..++......
T Consensus       282 Gg~rv~~~~f~~~~~~~~~l~~~~~~  307 (417)
T COG2223         282 GGRRVTLAVFVGMALAAALLSLFLTG  307 (417)
T ss_pred             cchhHHHHHHHHHHHHHHHHHccccc
Confidence            99999998888888888777766533

>PRK11043 putative transporter; Provisional

Probab=99.96  E-value=1e-27  Score=225.94  Aligned_cols=269  Identities=20%  Similarity=0.201  Sum_probs=211.7

Q ss_pred             hcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHh
Q 013992           40 GLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAA  119 (432)
Q Consensus        40 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~  119 (432)
                      .....+....+.+.+|.+.+++|.++.+.   +++.+++.++..++++++|+++||+|||+++..+..+..++.+++.++
T Consensus        15 ~~~~~~~~~~~~p~~~~i~~~~~~s~~~~---g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~   91 (401)
T PRK11043         15 SMLGFLATDMYLPAFKAIQADLQTSASAV---SASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWV   91 (401)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHCCCHHHH---HHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHh
Confidence            34455566778888899999999998888   999999999999999999999999999999999999999999999999


Q ss_pred             CChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHH
Q 013992          120 PNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPA  199 (432)
Q Consensus       120 ~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~  199 (432)
                      ++++.+++.|+++|++.+...+...+++.|++|+++|++..+.......+|..++|.+++++.+..+ ||+.|++.++..
T Consensus        92 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g-~~~~~~~~~~~~  170 (401)
T PRK11043         92 ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFG-WQAIFATLFAIT  170 (401)
T ss_pred             cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHHH
Confidence            9999999999999999888888888899999999999999999888889999999999999988877 999999988877


Q ss_pred             HHHHHHHhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhHHHhhcccchhHHHHH
Q 013992          200 LLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIA  279 (432)
Q Consensus       200 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (432)
                      ++..+..++++|+++    +++                                   +++++.+.++.+|+++++...+.
T Consensus       171 ~~~~~~~~~~~~~~~----~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~  211 (401)
T PRK11043        171 LLLILPTLRLKPSKK----ARK-----------------------------------QSQDALTFKQLLKSKTYLGNVLI  211 (401)
T ss_pred             HHHHHHHHHcCCCCC----ccc-----------------------------------cchHHHHHHHHHcChhHHHHHHH
Confidence            777666666665532    000                                   00011244567777776654333


Q ss_pred             HHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhhHhHHHHHHHHHH
Q 013992          280 GVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLG  357 (432)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~  357 (432)
                      .....     ..+.....+.|.++++.+ .++.+.+.......++.+++.++.+++.||+++|+..........++..
T Consensus       212 ~~~~~-----~~~~~~~~~~p~~~~~~g-~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~  283 (401)
T PRK11043        212 FAACS-----AAFFAWLTGSPFILEQMG-YSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVI  283 (401)
T ss_pred             HHHHH-----HHHHHHHHHhHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence            22211     133455567788887754 4567777777777788899999999999999988876655555444433

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.96  E-value=4.1e-27  Score=221.15  Aligned_cols=278  Identities=17%  Similarity=0.176  Sum_probs=216.8

Q ss_pred             hhcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHH
Q 013992           39 GGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAA  118 (432)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~  118 (432)
                      ..+..........+.+|.+.+++|.++.+.   ++..+.+.++..+++++.|+++||+|||++++.+.++..++.+++..
T Consensus        11 ~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~---~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~   87 (392)
T PRK10473         11 LVLLYPAGIDMYLVGLPRIAADLNASEAQL---HIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSL   87 (392)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHH
Confidence            334445555566688999999999988888   99999999999999999999999999999999999999999999999


Q ss_pred             hCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHH
Q 013992          119 APNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIP  198 (432)
Q Consensus       119 ~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~  198 (432)
                      +++++.+++.|+++|++.+...+....++.|++|+++|+++.++.+....+|..++|.+++.+.+..+ ||+.|++.++.
T Consensus        88 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g-~~~~~~~~~~~  166 (392)
T PRK10473         88 AETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFP-WQSLFYTMAAM  166 (392)
T ss_pred             hCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC-hHHHHHHHHHH
Confidence            99999999999999999999899999999999999999999999999999999999999998877766 99999998877


Q ss_pred             HHHHHHH-HhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhHHHhhcccchhHHH
Q 013992          199 ALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGL  277 (432)
Q Consensus       199 ~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (432)
                      .++..+. .+++||+++.     +.+                                ++....+..++.+++++++...
T Consensus       167 ~~i~~~~~~~~~~~~~~~-----~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~  209 (392)
T PRK10473        167 GILVLLLSLFILKETRPA-----RAP--------------------------------AASSKPRENSESLLNRFFLSRL  209 (392)
T ss_pred             HHHHHHHHHHHcCCCCCc-----ccC--------------------------------CccchHHHHHHHHhCHHHHHHH
Confidence            7666555 5566776320     000                                0000111234556777665544


Q ss_pred             HHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhhHhHHHHHHHHHH
Q 013992          278 IAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLG  357 (432)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~  357 (432)
                      +.......     .......+.|.++++..+.++.+.+.......++.+++.++.+++.||+++|+.+..+..+..++..
T Consensus       210 ~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~  284 (392)
T PRK10473        210 VITTLSVT-----VILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGI  284 (392)
T ss_pred             HHHHHHHH-----HHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            43222211     2233444567777666556677778888888889999999999999999999998888877777666


Q ss_pred             HHHHH
Q 013992          358 VLSAV  362 (432)
Q Consensus       358 ~~~~~  362 (432)
                      .+...
T Consensus       285 ~~~~~  289 (392)
T PRK10473        285 TLALS  289 (392)
T ss_pred             HHHHH
Confidence            55554

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.96  E-value=4.2e-28  Score=227.98  Aligned_cols=263  Identities=17%  Similarity=0.124  Sum_probs=203.5

Q ss_pred             HHHHHHHhhcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHH
Q 013992           32 LAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFV  111 (432)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~  111 (432)
                      .+....+......+......+.+|.+.+++|.++.+.   +++.+.+.++..+++++.|+++||+|||++++.+..+..+
T Consensus         9 ~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~---~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~   85 (394)
T PRK11652          9 LLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAV---QAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFIL   85 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHH
Confidence            3333333334555666677888999999999999888   9999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHH
Q 013992          112 GAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWM  191 (432)
Q Consensus       112 ~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~  191 (432)
                      +.+++.++++++.+++.|++.|++.+...+....+..|.+++++|+++.+....+..++..++|.+++.+.+..+ ||+.
T Consensus        86 ~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g-~~~~  164 (394)
T PRK11652         86 GTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFG-WRAC  164 (394)
T ss_pred             HHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-hHHH
Confidence            999999999999999999999999988888888889999999999999999999999999999999999988777 9999


Q ss_pred             HHhhHHHHHHHHHH-HhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhHHHhhcc
Q 013992          192 LGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKT  270 (432)
Q Consensus       192 f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (432)
                      |++.++..++..+. .++.||+++.    ++.                                  +++.....++.+++
T Consensus       165 f~~~~~~~~~~~~~~~~~~~~~~~~----~~~----------------------------------~~~~~~~~~~~~~~  206 (394)
T PRK11652        165 YLFLLLLGAGVTFSMARWMPETRPA----DAR----------------------------------RTRVLASYRTLLSN  206 (394)
T ss_pred             HHHHHHHHHHHHHHHHHhCCccCcc----ccc----------------------------------hhHHHHHHHHHHcC
Confidence            99988766655444 5567776421    000                                  00012234566777


Q ss_pred             cchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 013992          271 RTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGR  341 (432)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~  341 (432)
                      |+++...+..+..     +........+.+.++++..+.++.+.+.......++.+++..+.+++.||.++
T Consensus       207 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~  272 (394)
T PRK11652        207 RRFNCYLLMLIGT-----LAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST  272 (394)
T ss_pred             hHHHHHHHHHHHH-----HHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7776544332221     12334444556677777556667777887777788888888888999998873

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.96  E-value=7.8e-28  Score=225.00  Aligned_cols=268  Identities=21%  Similarity=0.219  Sum_probs=212.8

Q ss_pred             eeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHhCChhH
Q 013992           45 YDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGA  124 (432)
Q Consensus        45 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~  124 (432)
                      +...+..|.+|.+.+++|.++.+.   +++.+++.++..++.++.|+++||+|||+++..+.++.+++.+++.++++++.
T Consensus         5 ~~~~~~~p~~~~~~~~~~~s~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~   81 (377)
T PRK11102          5 LAIDMYLPALPVIAADFGVSAGSV---QMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQ   81 (377)
T ss_pred             hHHHHHhccHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHH
Confidence            344567789999999999998888   99999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHHHHHHH
Q 013992          125 LITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFI  204 (432)
Q Consensus       125 ~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~~~~~~  204 (432)
                      +++.|+++|++.+...+...+++.|++|+++|++++++.+....+|..+++.+++.+.+..+ ||+.|++.++..++..+
T Consensus        82 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~  160 (377)
T PRK11102         82 LIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFS-WHAIFWVLALAAILAAA  160 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-hHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999988776 99999998877776655


Q ss_pred             H-HhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhHHHhhcccchhHHHHHHHHH
Q 013992          205 L-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGL  283 (432)
Q Consensus       205 ~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (432)
                      . .+++||+++.    ++.++                              .+.++...+.++.+++++++...+...  
T Consensus       161 ~~~~~~~~~~~~----~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~--  204 (377)
T PRK11102        161 LVFFFIPETLPK----ERRQP------------------------------FHLRTTIRNFASLFRHKRVLGYMLASG--  204 (377)
T ss_pred             HHHHhCCccCcc----cccCC------------------------------CChHHHHHHHHHHHcChHHHHHHHHHH--
Confidence            5 5566775321    00000                              000001123456777777654333221  


Q ss_pred             HHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhhHhHHHHHHHH
Q 013992          284 QVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILS  355 (432)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  355 (432)
                         ..+........+.|.+..+..+.++.+.+.......++.+++.++.+++.||+++|+.+..+.....+.
T Consensus       205 ---~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~  273 (377)
T PRK11102        205 ---FSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIM  273 (377)
T ss_pred             ---HHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence               222234455556677776665666788888888999999999999999999999999888877654443

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.96  E-value=1.3e-27  Score=223.34  Aligned_cols=276  Identities=20%  Similarity=0.225  Sum_probs=220.0

Q ss_pred             hhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHhC--ChhHHHHHHhhhhcc
Q 013992           58 RDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAP--NPGALITGRVFVGLG  135 (432)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~r~l~G~~  135 (432)
                      ..+++.+..+.   +++.+.++.|+.+++++.|+++||+|-|+++..+.++.++++++...+.  +++.+++.|++||++
T Consensus        65 ~~~~~ws~~~k---~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~  141 (466)
T KOG2532|consen   65 AGEYDWSSTEK---GLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLG  141 (466)
T ss_pred             CceecCCHHHH---HHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHH
Confidence            34677888888   9999999999999999999999999999999999999999999988764  556789999999999


Q ss_pred             ccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCC-CCchHHHHHhhHHHHHHHHHHHhh-cCCCH
Q 013992          136 VGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRA-PGTWRWMLGVAGIPALLQFILMLL-LPESP  213 (432)
Q Consensus       136 ~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~-~~~wr~~f~~~~~~~~~~~~~~~~-~~e~~  213 (432)
                      .|..+|....+.+.|.|++||++..++...+..+|.+++.++++++.+. .| |++.|++.+..+++..+++++ ..|+|
T Consensus       142 ~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~G-W~sifY~~g~~g~i~~~~w~~~~~d~P  220 (466)
T KOG2532|consen  142 QGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLG-WPSIFYVFGIVGLIWFILWFLFYSDSP  220 (466)
T ss_pred             HhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCC-CchHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            9999999999999999999999999999999999999999999999998 66 999999999999988888554 56666


Q ss_pred             HHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhHHHhhcccchhHHHHHHHHHHHHhhhcchH
Q 013992          214 RWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGIN  293 (432)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (432)
                      .. .+.-..+|.                 +.+.+...+  ++.++..+.+++++++++.+|...+..+     +...++.
T Consensus       221 ~~-h~~is~~El-----------------~~I~~~k~~--~~~~~~~~vP~~~i~ts~~vwai~~~~f-----~~~~~~~  275 (466)
T KOG2532|consen  221 SK-HPNISEKEL-----------------KYIEKGKSE--AHVKKKPPVPYKAILTSPPVWAIWISAF-----GGNWGFY  275 (466)
T ss_pred             cc-CCCCCHHHH-----------------HHHHhcccc--cccCCCCCCCHHHHHcCHHHHHHHHHHH-----HHHHHHH
Confidence            42 111111221                 111111111  1111125778999999999987555544     4444889


Q ss_pred             HHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCC---------chhhHhHHHHHHHHHHHHHHH
Q 013992          294 TVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGR---------KKLLVISLSGVILSLGVLSAV  362 (432)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~---------~~~~~~~~~~~~~~~~~~~~~  362 (432)
                      .+..|.|.|+++..+.+..+.|+++.+..+...+..+++|.++||+.+         |..-.++....+++++.+.+.
T Consensus       276 ~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~  353 (466)
T KOG2532|consen  276 LLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFT  353 (466)
T ss_pred             HHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeec
Confidence            999999999999999999999999999999999999999999999865         223334444444444444444

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.96  E-value=3.4e-28  Score=229.07  Aligned_cols=325  Identities=16%  Similarity=0.128  Sum_probs=220.4

Q ss_pred             HHHHHHHhhcccceeccccchhhhh-hhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHH
Q 013992           32 LAFSAGIGGLLFGYDTGVISGALLY-IRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFF  110 (432)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~  110 (432)
                      .+..+++..++..++..+..+.+|. +.+++|.++.+.   +++.+++.+++.+++++.|+++||+|||++++.+.++++
T Consensus        16 ~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~---g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~   92 (399)
T PRK05122         16 RIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLA---GLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCA   92 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHH---HHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHH
Confidence            4444566667777778888888887 578899988888   999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHh---C-----ChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhcc
Q 013992          111 VGAVIMAAA---P-----NPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFT  182 (432)
Q Consensus       111 ~~~~~~~~~---~-----~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~  182 (432)
                      ++.+.+.++   +     +++.+++.|+++|++.+...+....++.|++|+|+|++++++...+..+|..+++.+++.+.
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~  172 (399)
T PRK05122         93 LSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLY  172 (399)
T ss_pred             HHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHH
Confidence            877665543   2     56688999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCchHHHHHhhHHHHHHHHHHHhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccch
Q 013992          183 RAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKI  262 (432)
Q Consensus       183 ~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (432)
                      +..+ ||+.+++.++..++..+.....|++++     .+.                                     ++.
T Consensus       173 ~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-------------------------------------~~~  209 (399)
T PRK05122        173 HWGG-LAGLGLLIMLLALLGLLLARPRPAVPP-----VKG-------------------------------------ERL  209 (399)
T ss_pred             Hccc-HHHHHHHHHHHHHHHHHHHhcCCCCCC-----CCc-------------------------------------cch
Confidence            8777 999988776655444333322233211     000                                     000


Q ss_pred             hHHHhhcccchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCc
Q 013992          263 NLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRK  342 (432)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~  342 (432)
                      +.++.++  +.+........     ....+.....+.+.|.++.+..   ..+.......++.+++.++.+++.||+++|
T Consensus       210 ~~~~~~~--~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~  279 (399)
T PRK05122        210 PFRRVLG--RVWPYGMGLAL-----ASIGFGTIATFITLYYAARGWD---GAALALTLFGVAFVGARLLFGNLINRLGGL  279 (399)
T ss_pred             hHHHHHH--HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHcccc---cchHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence            1111111  11111111111     1113344556677777665432   234455566778889999999999999999


Q ss_pred             hhhHhHHHHHHHHHHHHHHHHhccCCCCCccchhcccccccccccccccccccCccchhhhhccCCCCcccccccccc
Q 013992          343 KLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNK  420 (432)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~g~~~~~~~~  420 (432)
                      +.+..+..+..++..++....   +.+......++.+++.....+.....   .....|++.|++  ..|+.+...+.
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~G~~~~~~~~~~~~~---~~~~~~~~~~g~--~~g~~~~~~~~  349 (399)
T PRK05122        280 RVAIVSLLVEILGLLLLWLAP---SPWMALIGAALTGFGFSLVFPALGVE---AVKRVPPQNRGA--ALGAYSVFLDL  349 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHhHHHHHHHHHHH---HHHhCCHHHHHH--HHHHHHHHHHH
Confidence            988887777666655544321   22222222233333322222222221   223456689999  88876555443

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.95  E-value=1.6e-27  Score=223.63  Aligned_cols=283  Identities=13%  Similarity=0.094  Sum_probs=214.5

Q ss_pred             HHHHHHhhcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHH
Q 013992           33 AFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVG  112 (432)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~  112 (432)
                      +..++...+..++.....++..|.+++++|.++.+.   +++.+.+.+++.+++++.|++.||+|||++++.+.++++++
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~---g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g   81 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPMVPQFQQAFTLTAFQA---ALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALG   81 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence            445666777888888888999999999999998888   99999999999999999999999999999999999999999


Q ss_pred             HHHHHH---hCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCC----
Q 013992          113 AVIMAA---APNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAP----  185 (432)
Q Consensus       113 ~~~~~~---~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~----  185 (432)
                      .++...   .++++.+++.|++.|+|.|...+....++.+..|+++|++.+++.+....+|..+++.+++.+....    
T Consensus        82 ~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~  161 (410)
T TIGR00885        82 AFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQ  161 (410)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence            888644   4689999999999999999999999999999999999999999999999999999999988774321    


Q ss_pred             ---------------------CchHHHHHhhHHHHHHHHHHHhh--cCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHH
Q 013992          186 ---------------------GTWRWMLGVAGIPALLQFILMLL--LPESPRWLYRKGREEEAQAILRKVYPAHEVETEI  242 (432)
Q Consensus       186 ---------------------~~wr~~f~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (432)
                                           .+||+.|++.+++.++..++..+  .||.++      + +                   
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~------~-~-------------------  215 (410)
T TIGR00885       162 SQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH------S-D-------------------  215 (410)
T ss_pred             hhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc------c-c-------------------
Confidence                                 14999999888876665544433  333210      0 0                   


Q ss_pred             HHHHHHhHHHHHHccCccchhHHHhhcccchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcC-CCchhHHHHHHHHH
Q 013992          243 RDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSG-FASNRTALLLSLVT  321 (432)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  321 (432)
                                  +++.+.....++.+|+|+++...+..++     +.........+.+.|.++.+ +.+...+.......
T Consensus       216 ------------~~~~~~~~~~~~~~~~~~~~~~~l~~f~-----yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~  278 (410)
T TIGR00885       216 ------------AKQISFSASLSRLARIRHYREGVIAQFF-----YVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGA  278 (410)
T ss_pred             ------------cccccchhhHHHHHhChhHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHH
Confidence                        0000111133467788877664333222     22244455677888887643 33333334444445


Q ss_pred             HHHHHHHHHHHHHHHhhhCCchhhHhHHHHHHHHHHHHHH
Q 013992          322 SGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSA  361 (432)
Q Consensus       322 ~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~  361 (432)
                      ..+..+|+++++++.||+++|+.+.++..+..+.+++...
T Consensus       279 ~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~  318 (410)
T TIGR00885       279 MVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIF  318 (410)
T ss_pred             HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence            5778999999999999999999888877776666555554

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.95  E-value=4.2e-27  Score=220.39  Aligned_cols=298  Identities=21%  Similarity=0.185  Sum_probs=230.0

Q ss_pred             HHHHHHHHHhhcccceeccccch-hhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHH
Q 013992           30 LRLAFSAGIGGLLFGYDTGVISG-ALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFL  108 (432)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~  108 (432)
                      +.++..+++..+....+...++. .+..+.+|.+....+.   +.+.+++.++++++.++++.+.||++..+.+....++
T Consensus        44 l~i~~~~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~~l---~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~  120 (495)
T KOG2533|consen   44 LFILPFLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQL---GVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGIL  120 (495)
T ss_pred             HHHHHHHHHHHHHHhcchhcchhHHHcCCccccchhhhhh---hhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHH
Confidence            34455566666777777654433 3333557888877888   9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccC-----
Q 013992          109 FFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTR-----  183 (432)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~-----  183 (432)
                      +++..++.....|++.+++.|++.|+..+..+|....+++.|+.+++|++.++++.+...+|.++|.+++..+.+     
T Consensus       121 w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~  200 (495)
T KOG2533|consen  121 WGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSG  200 (495)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCC
Confidence            999998888899999999999999999999999999999999999999999999999999999999999988632     


Q ss_pred             -CCCchHHHHHhhHHHHHHHHHH-HhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHH--HHccCc
Q 013992          184 -APGTWRWMLGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEI--EEEGSS  259 (432)
Q Consensus       184 -~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  259 (432)
                       .. +|||.|++.++++++..++ ++++|+.|.-. +-.+.+|..                 ...+..++.+  ...++.
T Consensus       201 ~~~-gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~-~fl~~~ek~-----------------~~~~~~~~~~~~~~~~~~  261 (495)
T KOG2533|consen  201 GLA-GWRWLFIIEGVITLVLGIVVFFFLPDNPSKA-WFLTDEEKE-----------------LVVERLRESPSGGIENKF  261 (495)
T ss_pred             CcC-CceeehhHHHHHHHHHHheEEEEecCChhhc-cccchHHHH-----------------HHHHHHHhccCCCccccc
Confidence             23 5999999999988887766 77789987511 000011100                 0000011010  111115


Q ss_pred             cchhHHHhhcccchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013992          260 EKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRT  339 (432)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~  339 (432)
                      ++...++.+++|..|...+..++...     ..+++.+|+|.++.+..+.+..++..+..+..++++++.++.|+++||.
T Consensus       262 ~~~~~~~a~~dp~vw~~~l~~~~~~l-----v~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~  336 (495)
T KOG2533|consen  262 KWKGFKEALKDPGVWPFSLCYFFLKL-----VNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRL  336 (495)
T ss_pred             CHHHHHHHHhchhHHHHHHHHHHHhh-----ccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHH
Confidence            66788999999999886665544444     7788999999999996567789999999999999999999999999994


Q ss_pred             ----CCchhhHhHHHHHHH
Q 013992          340 ----GRKKLLVISLSGVIL  354 (432)
Q Consensus       340 ----~~~~~~~~~~~~~~~  354 (432)
                          .+|........+...
T Consensus       337 ~~~~~~~~~~~~~~~~~~~  355 (495)
T KOG2533|consen  337 KTIFARRLLFIVFLCLYAI  355 (495)
T ss_pred             hhhHHHHHHHHHHHHHHHH
Confidence                445444444443333

>PRK12382 putative transporter; Provisional

Probab=99.95  E-value=1.7e-27  Score=223.79  Aligned_cols=321  Identities=14%  Similarity=0.119  Sum_probs=211.8

Q ss_pred             HHHhhcccceeccccchhhhh-hhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHH
Q 013992           36 AGIGGLLFGYDTGVISGALLY-IRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAV  114 (432)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~  114 (432)
                      +.++.++.........+.+|. +.+|+|.+..+.   +++.+.+.+++.+++++.|+++||+||||+++.+.+...++.+
T Consensus        20 ~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~---g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~   96 (392)
T PRK12382         20 IAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMV---GIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGL   96 (392)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHH---HHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHH
Confidence            333445555556667778885 578999998888   9999999999999999999999999999999999888776654


Q ss_pred             HHH---H-----hCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 013992          115 IMA---A-----APNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPG  186 (432)
Q Consensus       115 ~~~---~-----~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~  186 (432)
                      ...   .     .+|++.+++.|+++|++.+...+...+++.|++|+|+|++++++.+.+...|..++|.+++++.+..+
T Consensus        97 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g  176 (392)
T PRK12382         97 AYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFG  176 (392)
T ss_pred             HHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            332   2     35788999999999999998888888999999999999999999999999999999999999888777


Q ss_pred             chHHHHHhhHHHHHHHHHHHhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhHHH
Q 013992          187 TWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVK  266 (432)
Q Consensus       187 ~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (432)
                       ||+.+.+..+..++........||.++      + +                                ++   +.+.++
T Consensus       177 -~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~--------------------------------~~---~~~~~~  213 (392)
T PRK12382        177 -FAALALTTMVLPLLAWAFNGTVRKVPA------H-A--------------------------------GE---RPSLWS  213 (392)
T ss_pred             -hHHHHHHHHHHHHHHHHHHHhccCCCC------C-c--------------------------------cc---CchHHH
Confidence             998877655443333222222233211      0 0                                00   000111


Q ss_pred             hhcccchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhhH
Q 013992          267 LLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLV  346 (432)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~  346 (432)
                      .++  .++...+..+..     .........+.|.|+++.+..   ..+.......++.++++++.|++.||+++|+.+.
T Consensus       214 ~~~--~~~~~~~~~~l~-----~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~  283 (392)
T PRK12382        214 VVG--LIWKPGLGLALQ-----GVGFAVIGTFVSLYFASKGWA---MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAI  283 (392)
T ss_pred             HHH--HHHHhHHHHHHH-----HHHHhHHHHHHHHHHHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehH
Confidence            111  111111111111     113445566777787765433   2344555667777899999999999999999988


Q ss_pred             hHHHHHHHHHHHHHHHHhccCCCCCccchhcccccccccccccccccccCccchhhhhccCCCCcccccccccc
Q 013992          347 ISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNK  420 (432)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~g~~~~~~~~  420 (432)
                      .+..+..++..++...   .+.+......++.+.......+....   ......|++.|++  +.|+.+...+.
T Consensus       284 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~g~~~~~~~~~~~~---~~~~~~~~~~~g~--~~g~~~~~~~~  349 (392)
T PRK12382        284 VSLLVETVGLLLLWLA---PTAWVALAGAALTGAGCSLIFPALGV---EVVKRVPSQVRGT--ALGGYAAFQDI  349 (392)
T ss_pred             HHHHHHHHHHHHHHHc---ccHHHHHHHHHHHHHHHHhHHHHHHH---HHHHhcCHHHHHH--HHHHHHHHHHH
Confidence            8877777766554432   12221222222222222222222222   2223455688999  88887665544

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.95  E-value=1.5e-27  Score=223.19  Aligned_cols=271  Identities=13%  Similarity=0.055  Sum_probs=202.2

Q ss_pred             HHHhhcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHH
Q 013992           36 AGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVI  115 (432)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~  115 (432)
                      ++++.++..+.........+.+.++++.+..+.   +++.+.+.+++.+.+++.|+++||+|||++++.+.++.++++++
T Consensus         8 l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~---~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~   84 (393)
T PRK11195          8 IMAAQFFSALADNALLFAAIALLKELHYPDWSQ---PLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLL   84 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH---HHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHH
Confidence            344555555544445566667788888877776   99999999999999999999999999999999999999999888


Q ss_pred             HHHhCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhh
Q 013992          116 MAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVA  195 (432)
Q Consensus       116 ~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~  195 (432)
                      ++++.+.   ++.|+++|++.+...|...+++.|++|+++|++++++.+....+|..+||.+++++.+.  .|+..+.+.
T Consensus        85 ~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~--~~~~~~~i~  159 (393)
T PRK11195         85 MLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP--HAEAALAVC  159 (393)
T ss_pred             HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence            8777664   78899999999999999999999999999999999999999999999999999999875  378777777


Q ss_pred             HHHHHHHHHHHhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhHHHhhcccchhH
Q 013992          196 GIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRR  275 (432)
Q Consensus       196 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (432)
                      +...++..+..+.+||+|+...++ +.++.              .    ..++           .....+.++++|.++.
T Consensus       160 ~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~--------------~----~~~~-----------~~~~~~~l~~~~~~~~  209 (393)
T PRK11195        160 ALIYLLAALFNLFIPRLGARRPGQ-SWNPI--------------A----LLRD-----------FFHACRVLWRDKLGRF  209 (393)
T ss_pred             HHHHHHHHHHHhcCCCCccccccc-CCCHH--------------H----HHHH-----------HHHHHHHHHhCchhHH
Confidence            665555555566778765311000 00000              0    0000           0011246677777665


Q ss_pred             HHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhhHhHH
Q 013992          276 GLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISL  349 (432)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~  349 (432)
                      ..........     ......+..|.++++..+.++.+.+.......++.+++.+..+++.||.++++.+..+.
T Consensus       210 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~  278 (393)
T PRK11195        210 SLAGTTLFWG-----AGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI  278 (393)
T ss_pred             HHHHHHHHHH-----HHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH
Confidence            4333222221     23344455667777777777888999999999999999999999999988887776664

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.95  E-value=6.8e-28  Score=229.73  Aligned_cols=364  Identities=11%  Similarity=-0.002  Sum_probs=235.8

Q ss_pred             ChhHHHHHHHHHHhhcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHH
Q 013992           26 NPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVA  105 (432)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~  105 (432)
                      ..++|.++..+++.......+...++..+|.+.+++|.+..+.   +++.+.+.++..++.++.|+++||+|||++++.+
T Consensus        14 ~~~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~---~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~   90 (455)
T TIGR00892        14 GGWGWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSET---AWISSIMLAVLYAGGPISSILVNRFGCRPVVIAG   90 (455)
T ss_pred             CCcchHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHH---HHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhh
Confidence            3556777777666666555556667888999999999999888   9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCChhHHHH-HHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCC
Q 013992          106 DFLFFVGAVIMAAAPNPGALIT-GRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRA  184 (432)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~-~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~  184 (432)
                      .++.++++++++++++++.+++ .|+++|++.+...+....++.|+++ ++|+++.++...+..+|..+++.+++.+.+.
T Consensus        91 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~  169 (455)
T TIGR00892        91 GLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFES  169 (455)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            9999999999999999998865 5699999999877777788899996 6799999999999999999999999998887


Q ss_pred             CCchHHHHHhhHHHHHHHHHHHhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhH
Q 013992          185 PGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINL  264 (432)
Q Consensus       185 ~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (432)
                      .+ ||+.|++.+++.++..+..+++.+.++... +.+.++.+    .....+..++        ... ....++..+...
T Consensus       170 ~g-wr~~f~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~--------~~~-~~~~~~~~~~~~  234 (455)
T TIGR00892       170 FG-WRGSFLILGGLLLHCCVCGALMRPVGPSQR-VSKSKSKE----GLPPDGSTKK--------LSK-KSTAEKINRFLD  234 (455)
T ss_pred             hC-hHHHHHHHHHHHHHHHHHHHHhCCCCcccc-cccccccc----cCCCCCcccc--------ccc-cchhhhhhhhcc
Confidence            77 999999999877766555444432211000 00000000    0000000000        000 000000011112


Q ss_pred             HHhhcccchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhh--CCc
Q 013992          265 VKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRT--GRK  342 (432)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--~~~  342 (432)
                      .+.+++|.++......+....     .......+.|.|.++. +.+..+++....+.+++.++++++.+++.||.  ++|
T Consensus       235 ~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~  308 (455)
T TIGR00892       235 FSLFTHRGFLVYLSGNVIMFL-----GFFAPIIFLVPYAKDK-GVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPH  308 (455)
T ss_pred             hHHhcCchHHHHHHHHHHHHH-----HccchHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHH
Confidence            357788887654443322222     4455566788888875 45577888888888999999999999999974  333


Q ss_pred             hhhHhHHHHHHHHHHHHHHHHhccCCCCCccchhcccccccccccccccccccCccchhhhhccCCCCcccccccccc
Q 013992          343 KLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNK  420 (432)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~g~~~~~~~~  420 (432)
                      +...+.......+...+.... ..+.+...+..+..++......+.......+   .+|++.+++  +.|+.+...+.
T Consensus       309 ~~~~~~~~~~~~~l~~ll~~~-~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~---~~~~~~~g~--~~g~~~~~~~l  380 (455)
T TIGR00892       309 VQYLFSFALLFNGLTHLLCAL-AGDYTGLVIYCIFFGLSFGSVGALLFEVLMD---LVGAQRFSS--AVGLVTIVECC  380 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHhchHHHHHHHHHHH---HhhHHHHhh--HHhHHHHHHHH
Confidence            333333222222222111111 1222222233333333322222222222223   345588888  88877655444

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.95  E-value=6.7e-26  Score=211.88  Aligned_cols=274  Identities=16%  Similarity=0.166  Sum_probs=207.1

Q ss_pred             HHHHHHhhcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHH
Q 013992           33 AFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVG  112 (432)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~  112 (432)
                      +..+.++.++...+....++.+|.+.+++|.+..+.   |++.+.+.+++.+++++.|+++||+|||+++..+.++.+++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~---G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~   84 (381)
T PRK03633          8 VLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQV---GVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAG   84 (381)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455556677788888999999999999999988888   99999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHH
Q 013992          113 AVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWML  192 (432)
Q Consensus       113 ~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f  192 (432)
                      ..++++++|++.+++.|+++|++.+...+.....+.|..++++|+++++.+..+..+|..+|+.+++.+.+... |...+
T Consensus        85 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-~~~~~  163 (381)
T PRK03633         85 CAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELM-SVLPW  163 (381)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc-chHHH
Confidence            99999999999999999999999998888888888899999999999999999999999999999999876532 32222


Q ss_pred             HhhHHHHHHHHHHHhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhHHHhhcccc
Q 013992          193 GVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRT  272 (432)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (432)
                       ..+........ .++.+.+|+    +.                                 +   +++..+.++.+++|.
T Consensus       164 -~~~~~~~~~~~-~~~~~~~~~----~~---------------------------------~---~~~~~~~~~~~~~~~  201 (381)
T PRK03633        164 -VTGLVLAAILP-LLFTRILNQ----QA---------------------------------E---NHDSTSIWPMLKLRQ  201 (381)
T ss_pred             -HHHHHHHHHHH-HHHhcccCC----CC---------------------------------C---CCCCCCHHHHHHhcc
Confidence             22222211111 112111110    00                                 0   001123456677777


Q ss_pred             hhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhhHhHHHHH
Q 013992          273 VRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGV  352 (432)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~  352 (432)
                      ++......+.     ....+.....+.|.|+++.+ .++...+.......++.+++++..|++.||+++|+.+..+....
T Consensus       202 ~~~~~~~~~~-----~~~~~~~~~~~lp~~~~~~g-~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~  275 (381)
T PRK03633        202 ARLGVNGCII-----SGIVLGSLYGLMPLYLNHQG-MSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVV  275 (381)
T ss_pred             hHHHHHHHHH-----HHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHH
Confidence            6643222111     11133455567899988764 44666777777888889999999999999999999888777766


Q ss_pred             HHHHHH
Q 013992          353 ILSLGV  358 (432)
Q Consensus       353 ~~~~~~  358 (432)
                      .++...
T Consensus       276 ~~~~~~  281 (381)
T PRK03633        276 ILGSIA  281 (381)
T ss_pred             HHHHHH
Confidence            665543

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.95  E-value=2.9e-27  Score=231.77  Aligned_cols=305  Identities=15%  Similarity=0.116  Sum_probs=225.4

Q ss_pred             HHHHHhhcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHH
Q 013992           34 FSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGA  113 (432)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~  113 (432)
                      +..++..+...+..+..+..++.+.++|+++..+.   |++.+.+.++++++.++.++++||+|||+.+.++.+++++++
T Consensus        36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~---G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~  112 (633)
T TIGR00805        36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSS---GLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGS  112 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcc---eeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHH
Confidence            44445667777778889999999999999999998   999999999999999999999999999999999999999999


Q ss_pred             HHHHHhC---------------------------------------------------ChhHHHHHHhhhhccccchhhh
Q 013992          114 VIMAAAP---------------------------------------------------NPGALITGRVFVGLGVGMASMT  142 (432)
Q Consensus       114 ~~~~~~~---------------------------------------------------~~~~~~~~r~l~G~~~~~~~~~  142 (432)
                      +++++.+                                                   .+..++++|+++|+|.+..++.
T Consensus       113 ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~  192 (633)
T TIGR00805       113 FLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPL  192 (633)
T ss_pred             HHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhc
Confidence            9987652                                                   2456789999999999999999


Q ss_pred             HHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCC---------------------CchHHHHHhhHHHHHH
Q 013992          143 SPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAP---------------------GTWRWMLGVAGIPALL  201 (432)
Q Consensus       143 ~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~---------------------~~wr~~f~~~~~~~~~  201 (432)
                      ..+++.|++|+++|+++++++.....+|..+|+++++++.+..                     +.|+..|++.+++.++
T Consensus       193 ~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l  272 (633)
T TIGR00805       193 GISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALL  272 (633)
T ss_pred             CchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999887542                     1267778888887777


Q ss_pred             HHHHHhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhHHHhhcccchhHHHHHHH
Q 013992          202 QFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGV  281 (432)
Q Consensus       202 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (432)
                      ..+.++++|++.+...++.+.++.++.  .... .+ ++.        .....+..++.+...++++++|.++...+..+
T Consensus       273 ~~v~l~~~p~~lp~~~~~~~~~~~~~~--~~~~-~~-~~~--------~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~  340 (633)
T TIGR00805       273 TSIPFFFFPKALPKEGKRVNVDVHETE--KLEK-SE-DKS--------RKKNSDITKDFPKIIKRLLCNPIYMLVILAQV  340 (633)
T ss_pred             HHHHHHhCccccCCcccccchhhhhhh--cccc-cc-ccc--------chhhhhhHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence            666667777652200000000000000  0000 00 000        00000001112345678999998877655544


Q ss_pred             HHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHH-HHHHHHHHHHHHHhhhCC--chhhHhHHHHHHHHHHH
Q 013992          282 GLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSG-LNAAGSIVSIYFIDRTGR--KKLLVISLSGVILSLGV  358 (432)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~~~--~~~~~~~~~~~~~~~~~  358 (432)
                      +...     .++.+..+.|.|+++..+.++.+++.+.....+ +.+++.+++|+++||++.  |+.+..+.....+++++
T Consensus       341 ~~~~-----~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~  415 (633)
T TIGR00805       341 IDSL-----AFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLL  415 (633)
T ss_pred             HHHH-----HHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHH
Confidence            4333     677888899999998888888888888776655 568999999999999984  46666666655555444

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.95  E-value=2.5e-27  Score=221.47  Aligned_cols=269  Identities=16%  Similarity=0.121  Sum_probs=199.3

Q ss_pred             hcccceeccccchhhhh-hhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHH-HHHHHHHHHHHHH
Q 013992           40 GLLFGYDTGVISGALLY-IRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILV-ADFLFFVGAVIMA  117 (432)
Q Consensus        40 ~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~-~~~~~~~~~~~~~  117 (432)
                      ++..++......+.+|. +.+++|.++.+.   +++.+.+.+...+.+++.|+++||+||||.++. +..+..++.++++
T Consensus         6 ~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~---g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~   82 (375)
T TIGR00899         6 AFLTGIAGALQFPTLSLFLSEEVRARPAMI---GLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFA   82 (375)
T ss_pred             HHHHHHHHHHHhhHHHHHHHcccCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHH
Confidence            45556666777787776 568899998888   999999999999999999999999999887654 5666667778889


Q ss_pred             HhCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhH--HHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhh
Q 013992          118 AAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGAL--VSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVA  195 (432)
Q Consensus       118 ~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~--~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~  195 (432)
                      +++|++.+++.|+++|.+.+...|...++..|+.|+++|++.  .+....+.++|..+++.+++.+.+..+ ||+.|++.
T Consensus        83 ~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~-~~~~f~~~  161 (375)
T TIGR00899        83 WNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFG-FTVMFLTA  161 (375)
T ss_pred             hcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcc-cHHHHHHH
Confidence            999999999999999988888888888889999888777754  577788889999999999999988777 99999999


Q ss_pred             HHHHHHHHHH-HhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhHHHhhcccchh
Q 013992          196 GIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVR  274 (432)
Q Consensus       196 ~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (432)
                      ++..++..+. ++++||+|+...    .+                                   ++..+.++.+++++++
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~----~~-----------------------------------~~~~~~~~~~~~~~~~  202 (375)
T TIGR00899       162 ALAFVLCGVLVWLFLPSYPRGAP----GA-----------------------------------LTRLEVRGLLASRDTR  202 (375)
T ss_pred             HHHHHHHHHHHHHhCCCcccCcc----cc-----------------------------------cCcchhhhhhcCcchH
Confidence            8877666655 555788653100    00                                   0001122355666665


Q ss_pred             HHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhhHhHHHHHHH
Q 013992          275 RGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVIL  354 (432)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~  354 (432)
                      ......+....     .......+.|.++++..+.++.+.+..........+++.++.|++.||+++|+.+..+.....+
T Consensus       203 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~  277 (375)
T TIGR00899       203 LLFVACTLMWG-----CNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVA  277 (375)
T ss_pred             HHHHHHHHHHH-----HHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHH
Confidence            43333222211     2333445667787666566677777777666667788889999999999999988776655444


Q ss_pred             HH
Q 013992          355 SL  356 (432)
Q Consensus       355 ~~  356 (432)
                      ..
T Consensus       278 ~~  279 (375)
T TIGR00899       278 FY  279 (375)
T ss_pred             HH
Confidence            43

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00897 2A0118 polyol permease family

Probab=99.95  E-value=6.8e-27  Score=219.98  Aligned_cols=254  Identities=15%  Similarity=0.043  Sum_probs=185.9

Q ss_pred             cchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHH---H-hCChhHH
Q 013992           50 ISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMA---A-APNPGAL  125 (432)
Q Consensus        50 ~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~-~~~~~~~  125 (432)
                      ....++.+.+|+|.+..+.   +++.+.+.+++.+++++.|+++||+|||+++..+..+.+++++++.   . .++++.+
T Consensus        32 ~~~~~~~~~~~~g~s~~~~---g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l  108 (402)
T TIGR00897        32 EQGWLSPFLKALGLSPQQS---ASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLI  108 (402)
T ss_pred             HHHhHHHHHHHhCCCHHHh---HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHH
Confidence            3345566668899998888   9999999999999999999999999999999999999998876653   3 3578888


Q ss_pred             HHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHH-HHHHHHHhhccCCCCchHHHHHhhHHHHHHHHH
Q 013992          126 ITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQ-FLSYLINLAFTRAPGTWRWMLGVAGIPALLQFI  204 (432)
Q Consensus       126 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~-~i~~~i~~~l~~~~~~wr~~f~~~~~~~~~~~~  204 (432)
                      ++.|+++|++.+...+.....+.|++|+++|++++++.+.+..+|. .+++.+++++.+..+ |+..++.......+..+
T Consensus       109 ~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g-~~~~~~~~~~~~~~~~~  187 (402)
T TIGR00897       109 LLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFG-EMNTLWSALAFVLTGGV  187 (402)
T ss_pred             HHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-hHHHHHHHHHHHHHHHH
Confidence            9999999999988888888889999999999999999999999997 589999988887766 76655544433333333


Q ss_pred             H-HhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhHHHhhcccchhHHHHHHHHH
Q 013992          205 L-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGL  283 (432)
Q Consensus       205 ~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (432)
                      + .++.+|.++..  +.+ +                              +++.++.+...++++|+|+++...+..+  
T Consensus       188 ~~~~~~~~~~~~~--~~~-~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  232 (402)
T TIGR00897       188 IALFSNKDIFTPQ--HMQ-T------------------------------REKFSELGKAATILFTNPNVLLGGMVRI--  232 (402)
T ss_pred             HHHhccCCCCCcc--ccc-C------------------------------CcchhhHHHHHHHHHcChhHHHHHHHHH--
Confidence            3 33344431100  000 0                              0000001123456788888765444322  


Q ss_pred             HHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhhH
Q 013992          284 QVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLV  346 (432)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~  346 (432)
                         +.....+....+.|.|.++.+. +..+.+.......++.+++.+..|+++||++||+...
T Consensus       233 ---~~~~~~~~~~~~~p~~~~~~g~-s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~  291 (402)
T TIGR00897       233 ---INTIGLFGFAVFLPMFVAELGF-STSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVR  291 (402)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH
Confidence               2233556677889999887544 4566677777778899999999999999999888764

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.95  E-value=2.4e-28  Score=216.75  Aligned_cols=386  Identities=17%  Similarity=0.195  Sum_probs=255.5

Q ss_pred             ChhHHHHHHHHHHhhcccceeccccchhhhhhhhcc-ccch----hhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchH
Q 013992           26 NPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDF-KSVD----RKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRT  100 (432)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~----~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~  100 (432)
                      .++..+.+.+...+.+.+.+|...++.+.|.+...| +.+.    ...-..+.+..+-.+|..+|++++|+++||+|||+
T Consensus        36 qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~  115 (538)
T KOG0252|consen   36 QWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKK  115 (538)
T ss_pred             hHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Confidence            567778888889999999999999999999877554 3221    11112288889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhC-------ChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHH
Q 013992          101 SILVADFLFFVGAVIMAAAP-------NPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFL  173 (432)
Q Consensus       101 ~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i  173 (432)
                      ++...++++.+++++++++.       -..++.+.|+++|+|.|+-+|...+..+|..-++.||...+...+.+.+|...
T Consensus       116 vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gila  195 (538)
T KOG0252|consen  116 VYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILA  195 (538)
T ss_pred             hhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhh
Confidence            99999999999999887753       24678889999999999999999999999999999999888887777777776


Q ss_pred             HHHHHhhccC----CCC----------chHHHHHhhHHHHHHHHHHHhhcCCCHHHHHHcC-CHHHHHHHHHHhCCCCch
Q 013992          174 SYLINLAFTR----APG----------TWRWMLGVAGIPALLQFILMLLLPESPRWLYRKG-REEEAQAILRKVYPAHEV  238 (432)
Q Consensus       174 ~~~i~~~l~~----~~~----------~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~  238 (432)
                      |.+++-.+..    ..+          -||..|.+.+++.+......+.+||++++..... +.+.+.+..++....   
T Consensus       196 G~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~---  272 (538)
T KOG0252|consen  196 GGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAGDMKKVLSV---  272 (538)
T ss_pred             ccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhhcccccccc---
Confidence            6665544332    111          4999999999999888888889999998763332 222222111111111   


Q ss_pred             HHHHHHHHHHhHHHHHHccCccchhHHHhhcccchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHH---
Q 013992          239 ETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTAL---  315 (432)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  315 (432)
                      +.+.    ++..+...+..+.....+.+.+..+.. + .+...+...|..-.+++....+....++..+..+..+..   
T Consensus       273 ~~~~----~~~~~~~~~~~~~~~~~F~~~f~~~hg-~-~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~  346 (538)
T KOG0252|consen  273 DIEA----ESTAESDVPPPSNSFGLFSRLFLRWHG-K-HLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHEL  346 (538)
T ss_pred             ccch----hhccccCCCCcccccchHHHHHHHHHH-H-HHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHH
Confidence            0000    000000000001111112222222211 2 223333344444556777777778888765544322211   


Q ss_pred             -----HHHHHHHHHHHHHHHHHHHHHhhhCCchhhHhHHHHHHHHHHHHHHHHhc-cCCC-CCccchhcccccccccccc
Q 013992          316 -----LLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHE-TTSH-SPMVSAVETSHFSNLTCPD  388 (432)
Q Consensus       316 -----~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~  388 (432)
                           ...++.....++|..+..+++|++|||+..+.++.++.+..+.+...... .... ..+..++...+........
T Consensus       347 ~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~t  426 (538)
T KOG0252|consen  347 FKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNAT  426 (538)
T ss_pred             HHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCce
Confidence                 12222233344566777788999999999999999999988877765542 2222 2223333333334455555


Q ss_pred             cccccccCccchhhhhccCCCCccccccccccccccc
Q 013992          389 YSSAATADRWDCMKCLKASSPDCGFCASHSNKVKGIS  425 (432)
Q Consensus       389 ~~~~~~~~~~~~~~~~r~~~~~~g~~~~~~~~~~g~~  425 (432)
                      .....+|.+|.   ++|++  ..|++.+.....+.++
T Consensus       427 tfivpaE~FPa---rvR~t--~hGIsAA~GK~GAivg  458 (538)
T KOG0252|consen  427 TFIVPAEIFPA---RVRST--CHGISAASGKAGAIVG  458 (538)
T ss_pred             eEEeehhhchH---HHhhh--hhhHHHHhccchHHHH
Confidence            55566677666   99999  9999988877655444

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.95  E-value=2.8e-26  Score=216.84  Aligned_cols=282  Identities=18%  Similarity=0.136  Sum_probs=205.6

Q ss_pred             HHHHhhcccceeccccchhhhhhhhccccchhhh--HHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHH
Q 013992           35 SAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKT--LLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVG  112 (432)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~  112 (432)
                      .++++.++.........+.+|.+.+++|.+..+.  .+.+++.+++.++..+++++.|+++||+|||++++.+.++.+++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~   97 (408)
T PRK09874         18 VAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIV   97 (408)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHH
Confidence            3344556667777778889999999999876553  34488999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHH
Q 013992          113 AVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWML  192 (432)
Q Consensus       113 ~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f  192 (432)
                      .+++.++++++.+++.|++.|++.+ ..+....++.|++|+++|+++.++......+|..+++.+++.+.+..+ ||+.|
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~  175 (408)
T PRK09874         98 MVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYG-LRPVF  175 (408)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-HHHHH
Confidence            9999999999999999999999865 567777889999999999999999999999999999999999988776 99999


Q ss_pred             HhhHHHHHHHHHH-HhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhHHHhhccc
Q 013992          193 GVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTR  271 (432)
Q Consensus       193 ~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (432)
                      ++.++..++..+. +++.||+++..   ++.+                                  +.+..+..+.++++
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~----------------------------------~~~~~~~~~~~~~~  218 (408)
T PRK09874        176 FITASVLFLCFLVTLFCIRENFQPV---SKKE----------------------------------MLHMREVVTSLKNP  218 (408)
T ss_pred             HHHHHHHHHHHHHHHHHhccCcccc---cchh----------------------------------hhHHHHHHHhCcCC
Confidence            9988877666555 45566653200   0000                                  00001123455666


Q ss_pred             chhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchh---HHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhhHhH
Q 013992          272 TVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNR---TALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVIS  348 (432)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~  348 (432)
                      +++..........    .........+.+.|..+..+....   ..+.......++.+++.+..|++.||++||+.+..+
T Consensus       219 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~  294 (408)
T PRK09874        219 KLVLSLFVTTLII----QVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITA  294 (408)
T ss_pred             chHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHH
Confidence            6544332211111    112334445567776665443222   234455556677788889999999999999998887


Q ss_pred             HHHHHHHHHHH
Q 013992          349 LSGVILSLGVL  359 (432)
Q Consensus       349 ~~~~~~~~~~~  359 (432)
                      .....++.+.+
T Consensus       295 ~~~~~~~~~~~  305 (408)
T PRK09874        295 LIFSVLLLIPM  305 (408)
T ss_pred             HHHHHHHHHHH
Confidence            77665554443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.95  E-value=5.2e-28  Score=229.00  Aligned_cols=329  Identities=15%  Similarity=0.104  Sum_probs=230.2

Q ss_pred             cccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHH--
Q 013992           41 LLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAA--  118 (432)
Q Consensus        41 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~--  118 (432)
                      ++..+......+.+|.+.++++.+..+.   +++.+.+.+++.+++++.|+++||+|||+++..+..+.+++.+..+.  
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~---g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~  103 (417)
T PRK10489         27 FISIFGLGLLGVAVPVQIQMMTGSTLQV---GLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNA  103 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCHHHH---HHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHH
Confidence            3344455567778898888888877777   99999999999999999999999999999999888887777665442  


Q ss_pred             ---hCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhh
Q 013992          119 ---APNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVA  195 (432)
Q Consensus       119 ---~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~  195 (432)
                         .++++.+++.|+++|++.+...+...+++.|+.|+++|+++.++......+|..+|+.+++.+.+..+ |++.|++.
T Consensus       104 ~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~-~~~~~~~~  182 (417)
T PRK10489        104 FLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGG-VAWNYGLA  182 (417)
T ss_pred             HcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHh-hHHHHHHH
Confidence               56788999999999999888888888999999999999999999999999999999999999887766 99999988


Q ss_pred             HHHHHHHHHHHhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhHHHhhcccchhH
Q 013992          196 GIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRR  275 (432)
Q Consensus       196 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (432)
                      ++..++..+..+.+||+++..   .+.++                               ..++.....+..+++|.++.
T Consensus       183 ~~~~~~~~~~~~~l~~~~~~~---~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~  228 (417)
T PRK10489        183 AAGTFITLLPLLRLPALPPPP---QPREH-------------------------------PLRSLLAGFRFLLASPVVGG  228 (417)
T ss_pred             HHHHHHHHHHHHhCCCCCCCC---ccccc-------------------------------chHHHHHHHHHHHcChHHHH
Confidence            877777666667777754210   00000                               00000112345567776655


Q ss_pred             HHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhhHhHHHHHHHH
Q 013992          276 GLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILS  355 (432)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  355 (432)
                      ..+..++..      .......+.|.|.++..+.++...+.......++.+++.++.+++.||.++++.+..+..+..++
T Consensus       229 ~~~~~~~~~------~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~  302 (417)
T PRK10489        229 IALLGGLLT------MASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLA  302 (417)
T ss_pred             HHHHHHHHH------HHHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHH
Confidence            433322211      12345567888988866666778888888888999999999999999977777777776666655


Q ss_pred             HHHHHHHHhccCCCCCccchhcccccccccccccccccccCccchhhhhccCCCCccccccccccc
Q 013992          356 LGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKV  421 (432)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~g~~~~~~~~~  421 (432)
                      ..++...   .+.+...+..+..+.+.....+.....   .....|++.|++  +.|+.+...+..
T Consensus       303 ~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~p~~~~g~--~~g~~~~~~~~g  360 (417)
T PRK10489        303 VGLFGLM---PMWILAVLCLALFGYLSAISSLLQYTL---LQTQTPDEMLGR--INGLWTAQNVTG  360 (417)
T ss_pred             HHHHHcc---chHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhCCHHHHHH--HHHHHHHHHhhh
Confidence            5443322   111111222222222222222111222   233455699999  898886655443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.95  E-value=1.7e-26  Score=213.76  Aligned_cols=309  Identities=26%  Similarity=0.329  Sum_probs=244.7

Q ss_pred             HHHhhcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHH
Q 013992           36 AGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVI  115 (432)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~  115 (432)
                      +++..+....+....++..|.+.+++|.+..+.   +++.+.+.++..+++++.|+++||+|||+.+..+.++..++.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~   80 (352)
T cd06174           4 LFLGFFLSGLDRGLLSPALPLLAEDLGLSASQA---GLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLL   80 (352)
T ss_pred             HHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHH
Confidence            344556677778888899999999999888888   99999999999999999999999999999999999999999999


Q ss_pred             HHHhCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhh
Q 013992          116 MAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVA  195 (432)
Q Consensus       116 ~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~  195 (432)
                      ..+.++++.+.+.|++.|++.+...+...+++.|++|+|+|++.+++......+|..+++.+++.+.+..+ ||+.+++.
T Consensus        81 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~  159 (352)
T cd06174          81 LAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLG-WRWLFLIL  159 (352)
T ss_pred             HHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999988776 99999998


Q ss_pred             HHHHHHHHHHHhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhHHHhhcccchhH
Q 013992          196 GIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRR  275 (432)
Q Consensus       196 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (432)
                      ++..++..+...+++                                                            |+++.
T Consensus       160 ~~~~~~~~~~~~~~~------------------------------------------------------------~~~~~  179 (352)
T cd06174         160 AILGLLLALLLLFLL------------------------------------------------------------RLLLL  179 (352)
T ss_pred             HHHHHHHHHHHHHHH------------------------------------------------------------HHHHH
Confidence            887776666544431                                                            22222


Q ss_pred             HHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCch-hhHhHHHHHHH
Q 013992          276 GLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKK-LLVISLSGVIL  354 (432)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~-~~~~~~~~~~~  354 (432)
                      ..+     ..+...........+.|.+.++..+.++.+.+.......++..++.++.+++.||++||+ .+..+..+..+
T Consensus       180 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i  254 (352)
T cd06174         180 LAL-----AFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAAL  254 (352)
T ss_pred             HHH-----HHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            222     223333456777788888988875667888889999999999999999999999999999 88888887777


Q ss_pred             HHHHHHHHHhccCCCCCccchhcccccccccccccccccccCccchhhhhccCCCCccccccccccc
Q 013992          355 SLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKV  421 (432)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~g~~~~~~~~~  421 (432)
                      +...+.....   .+.........+.+.....+.......+.   .|++.|++  ..|+.+...+..
T Consensus       255 ~~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~~~  313 (352)
T cd06174         255 GLLLLALAPS---LALLLVALLLLGFGLGFAFPALLTLASEL---APPEARGT--ASGLFNTFGSLG  313 (352)
T ss_pred             HHHHHHHhcc---HHHHHHHHHHHHHHHhccchhHHHHHHhh---cCHHHHHH--HHHHHHHHHHHH
Confidence            7766655321   22233333334444333333334333444   44489998  888776665543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00896 CynX cyanate transporter

Probab=99.94  E-value=3.8e-25  Score=204.91  Aligned_cols=265  Identities=18%  Similarity=0.257  Sum_probs=201.8

Q ss_pred             ccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHhCChhHHH
Q 013992           47 TGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALI  126 (432)
Q Consensus        47 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~  126 (432)
                      ....++.+|.+.+++|.+..+.   +++.+.+.++..+++++.|+++||+|||+++..+.++..++.+.+ .+++.+.++
T Consensus        16 ~~~~~~~lp~l~~~~~~s~~~~---g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~   91 (355)
T TIGR00896        16 LTSVGPLLPQIRSALGMSFSVA---GLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLF   91 (355)
T ss_pred             cccCcccHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHH
Confidence            3567889999999999999988   999999999999999999999999999999999999988888877 788999999


Q ss_pred             HHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCC-chHHHHHhhHHHHHHHHHH
Q 013992          127 TGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPG-TWRWMLGVAGIPALLQFIL  205 (432)
Q Consensus       127 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~-~wr~~f~~~~~~~~~~~~~  205 (432)
                      +.|++.|++.+...+....++.|++| ++|++++++.+.+..+|..+++.+.+.+.+..+ +||+.|.+.++..++..  
T Consensus        92 ~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~--  168 (355)
T TIGR00896        92 AGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLAL--  168 (355)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH--
Confidence            99999999999888888888899986 579999999999999999999999888876543 39999887766544332  


Q ss_pred             HhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhHHHhhcccchhHHHHHHHHHHH
Q 013992          206 MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQV  285 (432)
Q Consensus       206 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (432)
                      ..++||.++      +.+                               ++++.++...++.+|+|.++...+...+   
T Consensus       169 ~~~~~~~~~------~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  208 (355)
T TIGR00896       169 LAWIPQVRR------RVA-------------------------------ANQTTTRLTPVRIWRSPLAWQVTVFFGL---  208 (355)
T ss_pred             HHHhhhhcc------ccC-------------------------------CCCCCCCCCCchhhcCHhHHHHHHHHHH---
Confidence            233444311      000                               0000111234567788777654333222   


Q ss_pred             HhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhC-CchhhHhHHHHHHHHHHHHHH
Q 013992          286 FQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTG-RKKLLVISLSGVILSLGVLSA  361 (432)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~-~~~~~~~~~~~~~~~~~~~~~  361 (432)
                        ....++....+.|.|+++. +.+..+.+.......++.++++++.|++.||++ ||+.+..+..+..++...+.+
T Consensus       209 --~~~~~~~~~~~lp~~~~~~-g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~  282 (355)
T TIGR00896       209 --QSGLYYSLIGWLPAILISH-GASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLF  282 (355)
T ss_pred             --HHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHH
Confidence              2224566677889999876 455777888888889999999999999999995 555666666666665554443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.94  E-value=1.6e-25  Score=210.06  Aligned_cols=315  Identities=15%  Similarity=0.079  Sum_probs=213.9

Q ss_pred             ccccchhhh-hhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHhCChhHH
Q 013992           47 TGVISGALL-YIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGAL  125 (432)
Q Consensus        47 ~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~  125 (432)
                      .....+.++ ++.+++|.+..+.   |++.+...++..+..++.|+++||+|||++++.+.++..++.+++.++++++.+
T Consensus        26 ~~~~~~~~~~~~~~~~g~s~~~~---gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l  102 (400)
T PRK11646         26 FFVVFPLISIRFVDQLGWAAVMV---GIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLL  102 (400)
T ss_pred             HHHHHHHHHHHHHHHhCCcHHHH---HHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence            333444444 4678899988888   999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHHHHHHHH
Q 013992          126 ITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFIL  205 (432)
Q Consensus       126 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~~~~~~~  205 (432)
                      ++.|+++|++.+...+...+++.|++|+++|++++++......+|..+||.+++++. ..+ ||+.|++.++..++..++
T Consensus       103 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g-~~~~f~~~~~~~~~~~i~  180 (400)
T PRK11646        103 WLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYD-FRLVCATGAVLFVLAAAF  180 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh-HHHHHHHHHHHHHHHHHH
Confidence            999999999998888988999999999999999999999999999999999999998 444 999999988776665544


Q ss_pred             -HhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhHHHhhcccchhHHHHHHHHHH
Q 013992          206 -MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQ  284 (432)
Q Consensus       206 -~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (432)
                       .++.||.++     ++.                                  +++.+...++.+++++++...+......
T Consensus       181 ~~~~~~~~~~-----~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (400)
T PRK11646        181 NAWLLPAYKL-----STV----------------------------------RTPVREGMTRVLRDKRFVTYVLTLTGYY  221 (400)
T ss_pred             HHHhCCcccc-----ccc----------------------------------chhhHHHHHHHHcCchHHHHHHHHHHHH
Confidence             444554310     000                                  0001123456778887765333322211


Q ss_pred             HHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHh-hhCCchhhHhHHHHHHHHHHHHHHHH
Q 013992          285 VFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFID-RTGRKKLLVISLSGVILSLGVLSAVF  363 (432)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (432)
                      .     .......+.|.|.++.++. +.+.+.......+....+....+++.| |++.++.+..+..+..++..++....
T Consensus       222 ~-----~~~~~~~~~p~~~~~~~~~-~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~  295 (400)
T PRK11646        222 M-----LAVQVMLMLPIMVNDIAGS-PSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVS  295 (400)
T ss_pred             H-----HHHHHHHhhhhhHHhhcCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhh
Confidence            1     2223445788988887765 456666666666655555555555555 45656666666666665554443321


Q ss_pred             hccCCCCCccchhcccccccccccccccccccCccchhhhhccCCCCccccccccc
Q 013992          364 HETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSN  419 (432)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~g~~~~~~~  419 (432)
                         ..+.........+.......+.....   .....|++.|++  ..|+.+...+
T Consensus       296 ---~~~~~~~~~~l~~~g~~~~~p~~~~~---~~~~~p~~~~g~--~~g~~~~~~~  343 (400)
T PRK11646        296 ---NLQQLFTLICLFYIGSIIAEPARETL---SASLADARARGS--YMGFSRLGLA  343 (400)
T ss_pred             ---hHHHHHHHHHHHHHHHHHHHccHHHH---HHhcCCcccchh--hhhHHHHHHH
Confidence               12212111122222222222222222   223445589999  8887655443

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.94  E-value=6.5e-25  Score=207.99  Aligned_cols=376  Identities=18%  Similarity=0.153  Sum_probs=234.7

Q ss_pred             HHHHHHHhhcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHH
Q 013992           32 LAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFV  111 (432)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~  111 (432)
                      .+..+++.....++.....+.+++++..|+|-++. .   .|+.+.+.++.+++.++.|+++|.||||++++.+.++..+
T Consensus        45 ~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~~~~-~---~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vv  120 (599)
T PF06609_consen   45 SFAAFSLAVIAAYFVLVLPASILPYINADIGGSDN-W---SWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVV  120 (599)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCcc-c---hHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHh
Confidence            33344554444555666667788999999987643 3   6788889999999999999999999999999999999999


Q ss_pred             HHHHHHHhCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHH
Q 013992          112 GAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWM  191 (432)
Q Consensus       112 ~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~  191 (432)
                      |+++++.++|...++++..+.|+|.|.... ....++|..|.|.|....++..........+++.++..+....+ |||.
T Consensus       121 G~Iv~atA~~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~-WRw~  198 (599)
T PF06609_consen  121 GSIVCATAQNMNTFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSG-WRWI  198 (599)
T ss_pred             HHHHhhcCCcHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCC-cchH
Confidence            999999999999999999999999876654 45668999999999888887776666666677888877665554 9999


Q ss_pred             HHhhHHHHHHHHHHHhhcCCCHHHHHHcCC---HHHHHHHHHHh------------------CC----CCch----HHHH
Q 013992          192 LGVAGIPALLQFILMLLLPESPRWLYRKGR---EEEAQAILRKV------------------YP----AHEV----ETEI  242 (432)
Q Consensus       192 f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~---~~~~~~~~~~~------------------~~----~~~~----~~~~  242 (432)
                      |++.++...+.+++.+++..+|++...+++   ..+..+.++.+                  ..    ..+.    ....
T Consensus       199 ~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lv  278 (599)
T PF06609_consen  199 FYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLV  278 (599)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHH
Confidence            999988777766653333333333222221   11111111110                  00    0011    1111


Q ss_pred             HHHHHHhHHHHHHc--cCccchhHHHhhcccchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCch---hHHHHH
Q 013992          243 RDLKESVDKEIEEE--GSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASN---RTALLL  317 (432)
Q Consensus       243 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  317 (432)
                      ..........-.|.  +.+++.-+.+++|+++.....+    +..+.....++....+.|.........+.   ...+..
T Consensus       279 iG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r~~~~~l----vi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~  354 (599)
T PF06609_consen  279 IGFVLLVAFVVWEWFGAPKDPLFPHRLFKDRRGFAALL----VISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWI  354 (599)
T ss_pred             HHHHHHHHHHHhhhhccCCCCcCCHHHhccchHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehh
Confidence            11111111111222  2245667788998854322211    12222222355665666777666554443   246777


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhCCc-hhhHhHHHHHHHHHHHHHHHHhccCCCCCccchhcccccccccccccccccccC
Q 013992          318 SLVTSGLNAAGSIVSIYFIDRTGRK-KLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATAD  396 (432)
Q Consensus       318 ~~~~~~~~~~~~~~~g~l~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (432)
                      ..+...+...+.++.|.+..+++|- +.++++..++.+++.++.....+.... .+...++.+++.+..........+. 
T Consensus       355 s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~~-~i~~~~l~g~giG~~~~~~~~~~ql-  432 (599)
T PF06609_consen  355 SSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKNA-AIAFLVLAGFGIGGILVPAIVIAQL-  432 (599)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCCCcch-HHHHHHHHHHhHHHHHHHHHHeeEe-
Confidence            8888888899999999999988874 445566666666556555554333322 2222333333322211111111111 


Q ss_pred             ccchhhhhccCCCCccccccccccccc
Q 013992          397 RWDCMKCLKASSPDCGFCASHSNKVKG  423 (432)
Q Consensus       397 ~~~~~~~~r~~~~~~g~~~~~~~~~~g  423 (432)
                        .+|++.-++  ++|+..+.+....+
T Consensus       433 --~~p~~~ig~--a~gL~~s~R~~GGs  455 (599)
T PF06609_consen  433 --IVPDEDIGT--ATGLTGSIRSIGGS  455 (599)
T ss_pred             --eeCchHHHH--HHHHHHHHHHHhhH
Confidence              566688888  77777666555433

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00901 2A0125 AmpG-related permease

Probab=99.94  E-value=1.5e-25  Score=207.76  Aligned_cols=325  Identities=10%  Similarity=0.029  Sum_probs=214.8

Q ss_pred             ccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccc-----cchHH-HHHHHHHHHHHHHHHHHh-
Q 013992           47 TGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRF-----GRRTS-ILVADFLFFVGAVIMAAA-  119 (432)
Q Consensus        47 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-----Grr~~-l~~~~~~~~~~~~~~~~~-  119 (432)
                      ....++..|.+.+|+|.+..+.   ++.... .+...+ .+++|+++||+     ||||. ++.+.++.++.....++. 
T Consensus         4 ~~~~~~~~~~~~~~~g~s~~~~---g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~   78 (356)
T TIGR00901         4 LGLVGNTLPYWLRSKNVSLKTI---GFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLV   78 (356)
T ss_pred             chhHHhHHHHHHHHcCCCHHHH---HHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCC
Confidence            3456788899999999999888   777655 444454 89999999998     89997 466777777777777776 


Q ss_pred             --CChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCC-------chHH
Q 013992          120 --PNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPG-------TWRW  190 (432)
Q Consensus       120 --~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~-------~wr~  190 (432)
                        .+.+.+....++.+++.+...+...+++.|++|+|+|+++.++...+..+|.++++.+++.+.+..+       +||.
T Consensus        79 ~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~  158 (356)
T TIGR00901        79 PSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGY  158 (356)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHH
Confidence              4555677777788888888889999999999999999999999999999999999999988876654       2999


Q ss_pred             HHHhhHHHHHHHHHHHhh-cCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhHHHhhc
Q 013992          191 MLGVAGIPALLQFILMLL-LPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLK  269 (432)
Q Consensus       191 ~f~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (432)
                      .|++.++..++..+..++ .||+++.   +.+.++                          + .+    +.+...+++++
T Consensus       159 ~f~i~ai~~l~~~~~~~~~~~e~~~~---~~~~~~--------------------------~-~~----~~~~~~~~~~~  204 (356)
T TIGR00901       159 IFFWTALLILPGLLVTLFLAKEPQED---ASVPKP--------------------------L-TQ----AVLKPIREFFQ  204 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCCcc---cccchh--------------------------H-HH----HHHHHHHHHHH
Confidence            999998877776655443 5664210   000000                          0 00    01123445666


Q ss_pred             ccchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHH-HHHHHHHHHHHHHHhhhCCchhhHhH
Q 013992          270 TRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTS-GLNAAGSIVSIYFIDRTGRKKLLVIS  348 (432)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~~~~~~~~~~  348 (432)
                      ++..+......+  ..+.....+.....+.|.|+++. +.+..+.+......+ +..+++.++++++.||+|+|+.+..+
T Consensus       205 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~  281 (356)
T TIGR00901       205 RKNMIQALLLLL--LIVLYKLGDSAATVLTTLFLLDM-GFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLF  281 (356)
T ss_pred             hcCchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            665222111111  11222235566777888898884 445666665555444 56789999999999999999988888


Q ss_pred             HHHHHHHHHHHHHHHhcc--------CCCCCccchhcccccccccccccccccccCccchhhhhccCCCCcccccccc
Q 013992          349 LSGVILSLGVLSAVFHET--------TSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHS  418 (432)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~g~~~~~~  418 (432)
                      ..+..+...++.+.....        ..+......++.++......+.......+..   |++.|++  ..|+.++..
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---p~~~~g~--~~g~~~~~~  354 (356)
T TIGR00901       282 GIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLS---NPKFGAT--QMALLSSLS  354 (356)
T ss_pred             HHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhc---CCCccHH--HHHHHHHHH
Confidence            777766655444432111        1111111222223333333333443434444   4599999  888765543

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.93  E-value=4.1e-25  Score=212.05  Aligned_cols=286  Identities=16%  Similarity=0.064  Sum_probs=203.2

Q ss_pred             CCCChhHHHHHHHHHHhhcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccc-----c
Q 013992           23 SWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRF-----G   97 (432)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-----G   97 (432)
                      +|.+++|...++   +..+.++......+..+|...++.|.+.++.   +.. +.....+ ++.+++|+++||+     |
T Consensus         7 ~~~~~~~~~~~~---~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~i---g~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~G   78 (491)
T PRK11010          7 RIFQQPNSAILL---ILGFASGLPLALTSGTLQAWMTVENIDLKTI---GFF-SLVGQAY-VFKFLWSPLMDRYTPPFLG   78 (491)
T ss_pred             HHHcccHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH---HHH-HHHHHHH-HHHHHHHHHHHcccccCCC
Confidence            344444444433   3445666777778888999988888887777   664 3333333 6889999999999     9


Q ss_pred             chHH-HHHHHHHHHHHHHHHHHh---CChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHH
Q 013992           98 RRTS-ILVADFLFFVGAVIMAAA---PNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFL  173 (432)
Q Consensus        98 rr~~-l~~~~~~~~~~~~~~~~~---~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i  173 (432)
                      ||+. ++.+.+..+++....++.   ++++.+.+.+++.|++.+...+...++..|++|+++|+++.++...+..+|.++
T Consensus        79 rrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~ll  158 (491)
T PRK11010         79 RRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLV  158 (491)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHH
Confidence            9986 667777777777777775   467888899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhccC-CCCchHHHHHhhHHHHHHHHHHHhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHH
Q 013992          174 SYLINLAFTR-APGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKE  252 (432)
Q Consensus       174 ~~~i~~~l~~-~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (432)
                      ++.+..++.+ ..+ ||..|++.++..++..+..++.||+++.   ++++++                            
T Consensus       159 g~~l~~~l~~~~~G-Wr~~f~i~a~l~ll~~l~~~~~~e~~~~---~~~~~~----------------------------  206 (491)
T PRK11010        159 SGGLALWLADRYLG-WQGMYWLMAALLIPCIIATLLAPEPTDT---IPVPKT----------------------------  206 (491)
T ss_pred             HHHHHHHHHhcccC-HHHHHHHHHHHHHHHHHHHHhcCCCccc---cccccc----------------------------
Confidence            9999999988 455 9999999988777776666667876421   000000                            


Q ss_pred             HHHccCccchhHHHhhcccchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHH-HHHHHHHHHHHHH
Q 013992          253 IEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLS-LVTSGLNAAGSIV  331 (432)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  331 (432)
                       .  ++....+.++.+++++.+......+....     .......+.+.|+.+..+.+..+.+... ....++.+++.++
T Consensus       207 -~--~~~~~~~l~~~~~~~~~~~~ll~~~l~~~-----~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll  278 (491)
T PRK11010        207 -L--EQAVVAPLRDFFGRNNAWLILLLIVLYKL-----GDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALY  278 (491)
T ss_pred             -h--hhhHHHHHHHHHcCcCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence             0  00011234566777766554333222211     2334445566676554555677777776 4556789999999


Q ss_pred             HHHHHhhhCCchhhHhHHHHHHHHH
Q 013992          332 SIYFIDRTGRKKLLVISLSGVILSL  356 (432)
Q Consensus       332 ~g~l~d~~~~~~~~~~~~~~~~~~~  356 (432)
                      +|+++||+++|+.+.++..+..+..
T Consensus       279 ~G~L~dr~g~~~~l~i~~~l~~l~~  303 (491)
T PRK11010        279 GGILMQRLSLFRALMIFGILQGVSN  303 (491)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            9999999999887776655544443

>PRK10054 putative transporter; Provisional

Probab=99.93  E-value=2.5e-25  Score=208.44  Aligned_cols=275  Identities=10%  Similarity=0.076  Sum_probs=202.1

Q ss_pred             hhcccceeccccchhhh-hhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHH
Q 013992           39 GGLLFGYDTGVISGALL-YIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMA  117 (432)
Q Consensus        39 ~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~  117 (432)
                      ..++.........+.+| ++.+++|.+..+.   +++.+.+.++..+++++.|+++||+|||++++.+.++.+++.++.+
T Consensus        15 ~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~---g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~   91 (395)
T PRK10054         15 SSLLLTIGRGATLPFMTIYLSRQYSLSVDLI---GYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIP   91 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHH
Confidence            33444555555566555 4667899999888   9999999999999999999999999999999999999999999999


Q ss_pred             HhCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHH
Q 013992          118 AAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGI  197 (432)
Q Consensus       118 ~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~  197 (432)
                      ++++++.+++.|++.|.+.+...+....+..|..|+++|++++++.....++|..++|.+++++.+ .+ ||..|++.++
T Consensus        92 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g-~~~~f~~~~~  169 (395)
T PRK10054         92 LVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QS-INLPFWLAAI  169 (395)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hc-cCcHHHHHHH
Confidence            999999999999999888777788888999999999999999999999999999999999999875 34 9999998887


Q ss_pred             HHHHHHHH-HhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhHHHhhcccchhHH
Q 013992          198 PALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRG  276 (432)
Q Consensus       198 ~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (432)
                      ..++..+. .+++||+++    +++.+                              +    ++..+.++.+|+|+++..
T Consensus       170 ~~~i~~i~~~~~~~~~~~----~~~~~------------------------------~----~~~~~~~~~~~~~~~~~~  211 (395)
T PRK10054        170 CSAFPLVFIQIWVQRSEK----AIATE------------------------------T----GSVWSPSVLLQDKALLWF  211 (395)
T ss_pred             HHHHHHHHHHHHHhcccc----ccccc------------------------------h----hhhhhhhhhccCceehHH
Confidence            77666544 444565421    00000                              0    000122567888888765


Q ss_pred             HHHHHHHHHHhhhcchHHHHHhHHHHHHHc--CCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhhHhHHHHHHH
Q 013992          277 LIAGVGLQVFQQFVGINTVMYYSPTIVQLS--GFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVIL  354 (432)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~  354 (432)
                      .+..++...     .......+.+.|....  ...+....+.......+.........|++.||.++|+.+..+..+..+
T Consensus       212 ~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~  286 (395)
T PRK10054        212 TCSGFLASF-----VSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVI  286 (395)
T ss_pred             HHHHHHHHH-----HHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHH
Confidence            554433332     2222333445554332  223344556666666666677778889999999999988888766666


Q ss_pred             HHHHHHH
Q 013992          355 SLGVLSA  361 (432)
Q Consensus       355 ~~~~~~~  361 (432)
                      +...+..
T Consensus       287 ~~~~~~~  293 (395)
T PRK10054        287 GLVGFIF  293 (395)
T ss_pred             HHHHHHH
Confidence            6655443

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.93  E-value=5.2e-24  Score=193.97  Aligned_cols=294  Identities=14%  Similarity=0.057  Sum_probs=198.2

Q ss_pred             hHHHHHHHHHHhhcccceeccccchhhhhhhhccccchhh-hHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHH
Q 013992           28 YVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRK-TLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVAD  106 (432)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~  106 (432)
                      +++..++++.++.+-..  +...+...|++.+|+|+++.+ .   |.+.+.++.++++..++.|+++||+|.|+++..+.
T Consensus        25 W~~~~~~lC~fGF~~e~--R~n~s~a~p~L~~elglT~~qv~---G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~   99 (511)
T TIGR00806        25 WRVLVLYLCFYGFMAQF--RPGESFITPYLLTVLNFTEETVT---NEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQA   99 (511)
T ss_pred             hhHHHHHHHHHHHHHHh--hchHHHHHHHHHHHcCCCHHHhc---chHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHH
Confidence            33333334444444333  667888999999999999998 7   99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 013992          107 FLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPG  186 (432)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~  186 (432)
                      +.+++.+++.++++++..+.+.|++.|++.|... ....++..|+|+++|+++.++...+..+|.++++++++++. ..+
T Consensus       100 l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~-s~g  177 (511)
T TIGR00806       100 LSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV-TLG  177 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcC
Confidence            9999999999999999999999999999999999 99999999999999999999999999999999999999954 445


Q ss_pred             chHHHHHhh---HHHHHHHHHHHhhcCCCHHHHHHcCCHHHHHH---HHHHhCCCCchHHHHHHHHHHhHHHHHHccCcc
Q 013992          187 TWRWMLGVA---GIPALLQFILMLLLPESPRWLYRKGREEEAQA---ILRKVYPAHEVETEIRDLKESVDKEIEEEGSSE  260 (432)
Q Consensus       187 ~wr~~f~~~---~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (432)
                       ||+.+...   .....+++++.+++|..+|.+.-+++.+....   ..+...+... .+..+..+    ......-+.-
T Consensus       178 -Wr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~l  251 (511)
T TIGR00806       178 -WISYSTLNIISLVFMTFSVFLALFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPG-GKLEDYLG----TCRDSFLVRM  251 (511)
T ss_pred             -chhHHHHHHHHHHHHHHHHHHHHhCCCCchhhhhccccccccccccccccCCCCCc-cccchhhh----hhhhHHHHHH
Confidence             98865443   33344455567888866654333322111000   0000000000 00000000    0000000112


Q ss_pred             chhHHHhhcccchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013992          261 KINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRT  339 (432)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~  339 (432)
                      ..+.++..+++.+.+-.++..+.     .++++.+..|.-..-+....+.+..-|..-....+.+.+..+..|++-.++
T Consensus       252 ~~~~~~~y~n~~vl~WSlWwa~a-----~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w  325 (511)
T TIGR00806       252 LSELVTIYRNPQLLLWSLWWVFN-----SAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRW  325 (511)
T ss_pred             HHHHHHHhcCcchhhhhHHHHHH-----hhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCc
Confidence            34556677788776644444333     335565555554444433332222344555556666788888889885554

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.92  E-value=1.3e-24  Score=203.18  Aligned_cols=275  Identities=13%  Similarity=0.018  Sum_probs=204.3

Q ss_pred             HhhcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHH----HHHHHHHHHHH
Q 013992           38 IGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSI----LVADFLFFVGA  113 (432)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l----~~~~~~~~~~~  113 (432)
                      +.++..+.......|.+|.+.+++|.+..+.   +++.+++.+...++++++|+++||+|||+..    ..+..+..+  
T Consensus        11 ~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~i---g~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--   85 (382)
T TIGR00902        11 LGFFGYFCAYGIFLPFFPAWLKGIGLGEEMI---GLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--   85 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--
Confidence            4445555666778899999999999999888   9999999999999999999999999985433    222222222  


Q ss_pred             HHHHHhCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHH
Q 013992          114 VIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLG  193 (432)
Q Consensus       114 ~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~  193 (432)
                      ..+..+++++.+++.|.++|.+.+...|...++..|+  +++|++..+......++|.+++|++++.+.+..+ ||..|+
T Consensus        86 ~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g-~~~~f~  162 (382)
T TIGR00902        86 AFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFD-EQNILA  162 (382)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcC-hhHHHH
Confidence            2445678999999999999999888888888887665  4678999999999999999999999999999887 999998


Q ss_pred             hhHHHHHHHHHHHhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhHHHhhcccch
Q 013992          194 VAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTV  273 (432)
Q Consensus       194 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (432)
                      +.+...++.. ..+.++|+++    +++.++                              ++++++..+.++.+|+|++
T Consensus       163 ~~~~~~~~~~-~~~~~~~~~~----~~~~~~------------------------------~~~~~~~~~~~~~l~~~~~  207 (382)
T TIGR00902       163 ILTAGLAFML-IGFLIKPTIP----PKDAIP------------------------------EDESQGDSAFIALLKNPMN  207 (382)
T ss_pred             HHHHHHHHHH-HHHHcCCCCC----CCcccc------------------------------ccccccchhHHHHHcChHH
Confidence            8765533333 3333444321    000000                              0001112345788999988


Q ss_pred             hHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhhHhHHHHHH
Q 013992          274 RRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVI  353 (432)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~  353 (432)
                      +...+..++...     .......+.|.|+++.+ .++...+.......++.+++....+++.||+++|+.+.++.....
T Consensus       208 ~~~l~~~~l~~~-----~~~~~~~~~~~~l~~~g-~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~  281 (382)
T TIGR00902       208 LRFLAAVCLIQG-----AHAAYYGFSAIYWQAAG-ISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACV  281 (382)
T ss_pred             HHHHHHHHHHHH-----HHHHHHHHHHHHHHHCC-CCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHH
Confidence            775554433322     55666678889998854 456777888888899999999999999999999999998888888


Q ss_pred             HHHHHHHH
Q 013992          354 LSLGVLSA  361 (432)
Q Consensus       354 ~~~~~~~~  361 (432)
                      +....+..
T Consensus       282 ~~~~~~~~  289 (382)
T TIGR00902       282 GRWAIIGA  289 (382)
T ss_pred             HHHHHHHh
Confidence            87766654

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.92  E-value=1.3e-24  Score=230.52  Aligned_cols=342  Identities=10%  Similarity=-0.027  Sum_probs=222.6

Q ss_pred             HHHHHhhcccceeccccchhhh-hhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHH---HHHHH
Q 013992           34 FSAGIGGLLFGYDTGVISGALL-YIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILV---ADFLF  109 (432)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~---~~~~~  109 (432)
                      ...++..+.+++....+..... .+..+.+.+  ...+.++..+++.+.+.+.++++|+++||+|||+++..   ..++.
T Consensus        18 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~   95 (1140)
T PRK06814         18 WTQFFGAFNDNFLKNALVILILYGLSGALGAY--NNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGI   95 (1140)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHhccccccc--hHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHH
Confidence            3344444544444443333322 333333332  22334888899999999999999999999999997533   22333


Q ss_pred             HHHHHHHHHhCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchH
Q 013992          110 FVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWR  189 (432)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr  189 (432)
                      .+..+.+...+|++.++++|+++|++.+...|...+++.|++|+++|++++++.+++..+|.++||.+++++.+..+ |+
T Consensus        96 ~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~-~~  174 (1140)
T PRK06814         96 AALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGN-FV  174 (1140)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccc-cH
Confidence            33333344458999999999999999999999999999999999999999999999999999999999999998877 99


Q ss_pred             HHHHhhHHHHHHHHHHHhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhHHHhhc
Q 013992          190 WMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLK  269 (432)
Q Consensus       190 ~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (432)
                      +.|+..++..++..++.+++|++++.  .++...+.                 . ..           ++....++.+.+
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-----------------~-~~-----------~~~~~~~~~~~~  223 (1140)
T PRK06814        175 ILVALLMGIAVLGWLASLFIPKTGNA--APDLKIDR-----------------N-II-----------RSTITLLKYAKA  223 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCCCCC--CCCCeecc-----------------c-hH-----------HHHHHHHHHHhc
Confidence            99966666666666666777765320  00000000                 0 00           000124566777


Q ss_pred             ccchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhhHhHH
Q 013992          270 TRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISL  349 (432)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~  349 (432)
                      ++.++...+......+     .......+.|.|+++..+.++...+.+.....++.+++.++.|++.|+..+++.+..+.
T Consensus       224 ~~~~~~~~~~~~~~~~-----~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~  298 (1140)
T PRK06814        224 DKRIWLAILGISWFWL-----VGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGA  298 (1140)
T ss_pred             CchHHHHHHHHHHHHH-----HHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHH
Confidence            8877765554333332     34556668899998877777888899999999999999999999998877766655555


Q ss_pred             HHHHHHHHHHHHHH-----------------hccCCCCCccchhcccccccccccccccccccCccchhhhhccCCCCcc
Q 013992          350 SGVILSLGVLSAVF-----------------HETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCG  412 (432)
Q Consensus       350 ~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~g  412 (432)
                      ++..++.+.+.+..                 ...+.+...+..++.+++.........+.   .....|++.|++  ..|
T Consensus       299 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~p~~~~G~--v~g  373 (1140)
T PRK06814        299 LLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAA---LQAWANPAHRAR--VIA  373 (1140)
T ss_pred             HHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHH---HHhhCCccccee--eeH
Confidence            55444443333310                 00122222222233333333333223323   333555599999  888


Q ss_pred             ccccccc
Q 013992          413 FCASHSN  419 (432)
Q Consensus       413 ~~~~~~~  419 (432)
                      +.+....
T Consensus       374 ~~~~~~~  380 (1140)
T PRK06814        374 ANNVLNA  380 (1140)
T ss_pred             HHHHHHH
Confidence            7765543

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.92  E-value=1.8e-24  Score=230.08  Aligned_cols=329  Identities=11%  Similarity=-0.040  Sum_probs=220.5

Q ss_pred             cccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHH---HHHhCChhH
Q 013992           48 GVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVI---MAAAPNPGA  124 (432)
Q Consensus        48 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~---~~~~~~~~~  124 (432)
                      .....+.+.+..+++.+... .+.+++.+++.+++.++++++|+++||+|||++++.+.++..++.++   +...++++.
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~  105 (1146)
T PRK08633         27 GHKILIQNTLIKAYDGSEQV-ILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWL  105 (1146)
T ss_pred             HHHHHHHHHHHHHcCcccHH-HHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHH
Confidence            33445556666667665433 34489999999999999999999999999999999988766655554   344578999


Q ss_pred             HHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCC--------CCchHHHHHhhH
Q 013992          125 LITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRA--------PGTWRWMLGVAG  196 (432)
Q Consensus       125 ~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~--------~~~wr~~f~~~~  196 (432)
                      ++++|+++|++.+...+...+++.|++|+++|++++++...+..+|.++|+.+++++.+.        .++|++.+.+.+
T Consensus       106 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  185 (1146)
T PRK08633        106 AFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVL  185 (1146)
T ss_pred             HHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999998765        333555554444


Q ss_pred             HHH-HHHHHHHhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhHHHhhcccchhH
Q 013992          197 IPA-LLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRR  275 (432)
Q Consensus       197 ~~~-~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (432)
                      +.. ++..++.+.+||+|+....+.+.++                             ....+......+.+++++.++.
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~l~~~~~~~~  236 (1146)
T PRK08633        186 LAVAVLGLIFAYRLPKVPAAAPEVFDKKK-----------------------------YLFPKLLWRNLKLLRSDRVLWL  236 (1146)
T ss_pred             HHHHHHHHHHHhcCcCCCCCCcccccccc-----------------------------cccHHHHHHHHHHHhcCcHHHH
Confidence            333 3334445667776532110000000                             0000001123456677777765


Q ss_pred             HHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchh-HHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhhHhHHHHHHH
Q 013992          276 GLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNR-TALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVIL  354 (432)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~  354 (432)
                      ..+...+...     .......+.|.|+++..+.+.. ..+++.....++.+++.++.+++.||+++++.+.++.++..+
T Consensus       237 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~  311 (1146)
T PRK08633        237 AIIGLSYFWF-----ISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLAL  311 (1146)
T ss_pred             HHHHHHHHHH-----HHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHH
Confidence            4443332222     3345556778888776666666 788888888999999999999999999988888777776666


Q ss_pred             HHHHHHHHHhccCCCCCccchhcccccccccccccccccccCccchhhhhccCCCCccccccccc
Q 013992          355 SLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSN  419 (432)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~g~~~~~~~  419 (432)
                      +.+++....   +.+...+..++.+++.............+   ..|++.|++  +.|+.+...+
T Consensus       312 ~~~~~~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~p~~~rg~--~~~~~~~~~~  368 (1146)
T PRK08633        312 SLFLLPTAP---SLASVLVLFFLFGFSAGLFIVPLNALIQF---RAPEKELGK--VLAANNFLQN  368 (1146)
T ss_pred             HHHHHHHhh---hHHHHHHHHHHHHHHHHHhhHHHHHHHhh---cCCccchhh--hhHHHHHHHH
Confidence            655554432   22222222333333333333222322233   345588999  8887665544

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.92  E-value=6e-24  Score=199.42  Aligned_cols=265  Identities=14%  Similarity=0.105  Sum_probs=178.7

Q ss_pred             hcccceeccccchhhhh-hhhccccchhhhHHHHHHHHHHHH-HHHHHHHhhhhhhccccchHHH-HHHHHHHHHHHHHH
Q 013992           40 GLLFGYDTGVISGALLY-IRDDFKSVDRKTLLQESIVSMAVA-GAIIGAAIGGWMNDRFGRRTSI-LVADFLFFVGAVIM  116 (432)
Q Consensus        40 ~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~s~~~~-~~~i~~~~~g~l~dr~Grr~~l-~~~~~~~~~~~~~~  116 (432)
                      .++.........+.+|. +.+++|.+..+.   |++.+...+ +..++.++.++ +||+||||.+ +.+.+...++..+.
T Consensus        24 ~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~---g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~   99 (393)
T PRK15011         24 AFLTGIAGALQTPTLSIFLTDEVHARPAMV---GFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLF   99 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHH
Confidence            44455555556666665 578899988888   998776555 55566655555 9999999875 45566666778888


Q ss_pred             HHhCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccc--hhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHh
Q 013992          117 AAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIR--GALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGV  194 (432)
Q Consensus       117 ~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R--~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~  194 (432)
                      +++++++.+++.+.+.|...+...|....+..|+.++++|  +...++.+.+..+|.+++|++++++.+..+ ||..|+.
T Consensus       100 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~g-w~~~f~~  178 (393)
T PRK15011        100 AWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFS-FTVMYLS  178 (393)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcC-hHHHHHH
Confidence            8999999887666555544556778888888888877666  345578888999999999999999988777 9999999


Q ss_pred             hHHHHHHHHHH-HhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhHHHhhccc-c
Q 013992          195 AGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTR-T  272 (432)
Q Consensus       195 ~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  272 (432)
                      .++..++..+. ++++||.++.   + +.++                             ++     ....   .+++ .
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~---~-~~~~-----------------------------~~-----~~~~---~~~~~~  217 (393)
T PRK15011        179 AAVAFIVCGVMVWLFLPSMRKE---L-PLAT-----------------------------GT-----LEAP---RRNRRD  217 (393)
T ss_pred             HHHHHHHHHHHHHhhcCccCCC---C-cccc-----------------------------cc-----cccc---cccccc
Confidence            88777666555 5567776420   0 0000                             00     0000   0111 1


Q ss_pred             hhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhhHhHHHHH
Q 013992          273 VRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGV  352 (432)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~  352 (432)
                      .+.........     .........+.|.|+++..+.++.+.+.......++.+++.++.|+++||++||+.+..+....
T Consensus       218 ~~~~~~~~~~~-----~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~  292 (393)
T PRK15011        218 TLLLFVICTLM-----WGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAG  292 (393)
T ss_pred             HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence            12211111111     1133445567888887766666777777777667778889999999999999998877665544


Q ss_pred             HHH
Q 013992          353 ILS  355 (432)
Q Consensus       353 ~~~  355 (432)
                      .+.
T Consensus       293 ~~~  295 (393)
T PRK15011        293 VCF  295 (393)
T ss_pred             HHH
Confidence            443

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.92  E-value=2.5e-23  Score=183.09  Aligned_cols=313  Identities=15%  Similarity=0.148  Sum_probs=247.1

Q ss_pred             HHHHHHHhhcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHH
Q 013992           32 LAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFV  111 (432)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~  111 (432)
                      .+..+....++.++......+.+|.+.+.|+++..+.   +++...++.++.+.+++.|++.+|+|+|+.++.|+.++.+
T Consensus        14 ~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a---~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~av   90 (422)
T COG0738          14 AFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEA---SLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAV   90 (422)
T ss_pred             HHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHH---HHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHH
Confidence            3344445567788888889999999999999999999   9999999999999999999999999999999999999999


Q ss_pred             HHHHH---HHhCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCC----
Q 013992          112 GAVIM---AAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRA----  184 (432)
Q Consensus       112 ~~~~~---~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~----  184 (432)
                      ++.+.   +...++..++++-++.|.|.+...+.+..+++...++++..+.+++.+..+.+|.+++|++++.+...    
T Consensus        91 g~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~  170 (422)
T COG0738          91 GAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVAL  170 (422)
T ss_pred             HHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhh
Confidence            99988   46789999999999999999999999999999999998889999999999999999999999988773    


Q ss_pred             --------------CCchHHHHHhhHHHHHHHHHHHhhc--CCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 013992          185 --------------PGTWRWMLGVAGIPALLQFILMLLL--PESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKES  248 (432)
Q Consensus       185 --------------~~~wr~~f~~~~~~~~~~~~~~~~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (432)
                                    ..+||+.|...+...++..+.....  ||.+.                                  
T Consensus       171 ~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~----------------------------------  216 (422)
T COG0738         171 TMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQV----------------------------------  216 (422)
T ss_pred             ccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCc----------------------------------
Confidence                          1147888888887666666554443  43311                                  


Q ss_pred             hHHHHHHccCccchhHHHhhcccchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHH
Q 013992          249 VDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAG  328 (432)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (432)
                         +..+..+++.....+++++|+++...+.     .|++.........|++.|+.+..+.+.+++.........+.++|
T Consensus       217 ---~~~~~~~~~~~~~~~l~~~~~~~~gvl~-----~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vG  288 (422)
T COG0738         217 ---AAPSLGASGSAGLSSLFQNKHLRLGVLA-----IFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVG  288 (422)
T ss_pred             ---ccccccccccchHHHHHhChHHHHHHHH-----HHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHH
Confidence               0011111111256889999998775543     34444467788889999999987778889999999999999999


Q ss_pred             HHHHHHHHhhhCCchhhHhHHHHHHHHHHHHHHHHhccCCCCCccchhccccccccccccccccc
Q 013992          329 SIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAA  393 (432)
Q Consensus       329 ~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (432)
                      ++++.++.+|+...|.+.+......+.++...+...    ........+++.+..+..|...+..
T Consensus       289 RFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g----~v~~~~l~~ig~F~simfPTIfsla  349 (422)
T COG0738         289 RFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGG----VVALYALFLIGLFNSIMFPTIFSLA  349 (422)
T ss_pred             HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcC----hHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            999999999999999888876666655555555432    3344456666777666666554433

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.91  E-value=1.1e-22  Score=190.06  Aligned_cols=267  Identities=14%  Similarity=0.028  Sum_probs=196.0

Q ss_pred             eeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccch----HHHHHHHHHHHHHHHHHHHhC
Q 013992           45 YDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRR----TSILVADFLFFVGAVIMAAAP  120 (432)
Q Consensus        45 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr----~~l~~~~~~~~~~~~~~~~~~  120 (432)
                      .......|.+|.+.+|+|.+..+.   |++.+++.++..++++++|+++||+|||    +.+.+...+.  .......++
T Consensus        18 ~~~g~~~p~l~~~l~~~g~s~~~i---G~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~   92 (382)
T PRK11128         18 FAYGVFLPFWSVWLKGQGYTPETI---GLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGAH   92 (382)
T ss_pred             HHHHHHhhhHHHHHHhcCCCHHHH---HHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhcc
Confidence            445667888898999999998888   9999999999999999999999999984    3333322222  223344568


Q ss_pred             ChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHHH
Q 013992          121 NPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPAL  200 (432)
Q Consensus       121 ~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~~  200 (432)
                      +++.+++.|++.|++.+...+...++..++  +++|+++.+......++|..+||.+++++.+..+ ||..|++.++..+
T Consensus        93 ~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g-~~~~f~~~~~~~~  169 (382)
T PRK11128         93 SFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFG-EQAILWILTAGVA  169 (382)
T ss_pred             cHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcC-hhHHHHHHHHHHH
Confidence            899999999999999888888888887776  4568888888899999999999999999999887 9999988776555


Q ss_pred             HHHHHHhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhHHHhhcccchhHHHHHH
Q 013992          201 LQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAG  280 (432)
Q Consensus       201 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (432)
                      +..+..++.||+++    ++++                               +++.++...+.++.+|+|+++...+..
T Consensus       170 ~~~~~~~~~~~~~~----~~~~-------------------------------~~~~~~~~~~~~~i~~~~~~~~~~~~~  214 (382)
T PRK11128        170 SMLLGQLLRPTIMP----QGES-------------------------------RQQESAGWPAWKALLKEPTVWRFLLCV  214 (382)
T ss_pred             HHHHHHHccCCCCC----cccc-------------------------------ccccccccchHHHHHcChhHHHHHHHH
Confidence            44444444454321    0000                               000011123567889999887755544


Q ss_pred             HHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhhHhHHHHHHHHHHHHH
Q 013992          281 VGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLS  360 (432)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~  360 (432)
                      ++...     .......+.|.|.++.+. ++.+.+.......+..++..++.+++.||+++|+.+..+.....+...++.
T Consensus       215 ~l~~~-----~~~~~~~~~~~~~~~~g~-s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~  288 (382)
T PRK11128        215 SLLQG-----SHAAYYGFSAIYWQAAGY-SASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMG  288 (382)
T ss_pred             HHHHH-----HhHhHHHHHHHHHHHCCC-CHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
Confidence            43332     344555666788877544 466677777788888899999999999999999998888777777655443

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.91  E-value=6.6e-23  Score=193.02  Aligned_cols=277  Identities=16%  Similarity=0.021  Sum_probs=200.0

Q ss_pred             HhhcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccc-----cchH-HHHHHHHHHHH
Q 013992           38 IGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRF-----GRRT-SILVADFLFFV  111 (432)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-----Grr~-~l~~~~~~~~~  111 (432)
                      ..++.+++........+|.+.++.|.+.++.   |++..+...  .+..+++|+++||+     |||| .++.+.++.++
T Consensus         6 ~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~i---g~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l   80 (402)
T PRK11902          6 LLGFASGLPLALTSGTLQAWMTVEGLDIQTI---GFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAA   80 (402)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHcCCCHHHH---HHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHH
Confidence            3456677777888889999999999999998   888666665  58899999999999     8875 78888888888


Q ss_pred             HHHHHHHh---CChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCch
Q 013992          112 GAVIMAAA---PNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTW  188 (432)
Q Consensus       112 ~~~~~~~~---~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~w  188 (432)
                      +..+.++.   .+++.+.+..++.+++.+...+...+++.|++|+|+|+++.++...+..+|..+++.++..+.+...+|
T Consensus        81 ~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw  160 (402)
T PRK11902         81 SIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGW  160 (402)
T ss_pred             HHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCH
Confidence            88887776   356777778788888888888999999999999999999999999999999999999999888854249


Q ss_pred             HHHHHhhHHHHHHHHHHHhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhHHHhh
Q 013992          189 RWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLL  268 (432)
Q Consensus       189 r~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (432)
                      |..|++.++..++..+..++.||+++.   +++.++.                               +++.....++++
T Consensus       161 ~~~f~i~a~~~l~~~l~~~~~~e~~~~---~~~~~~~-------------------------------~~~~~~~~~~l~  206 (402)
T PRK11902        161 GNTYLLMAGLMLAGALTTLWAPEPEVP---ARPPRSL-------------------------------GEAVVGPLRDFF  206 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCccc---ccccchh-------------------------------HHHHHHHHHHHH
Confidence            999999888776666556667776431   0000000                               000122456788


Q ss_pred             cccchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHH-HHHHHHHHHHHHHHHHhhhCCchhhHh
Q 013992          269 KTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLV-TSGLNAAGSIVSIYFIDRTGRKKLLVI  347 (432)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~l~d~~~~~~~~~~  347 (432)
                      |+|.++...+..++...     .......+.+.++.+..+.++.+.+..... ..++.+++.++.+++.||+++|+.+..
T Consensus       207 ~~~~~~~~l~~~~l~~~-----~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~  281 (402)
T PRK11902        207 SRRGAWALLLLIVLYKL-----GDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLML  281 (402)
T ss_pred             hCcCHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            88888765544333222     111111233344444445556667776544 344678999999999999999988776


Q ss_pred             HHHHHHHHHHH
Q 013992          348 SLSGVILSLGV  358 (432)
Q Consensus       348 ~~~~~~~~~~~  358 (432)
                      +..+..+..+.
T Consensus       282 ~~~~~~l~~l~  292 (402)
T PRK11902        282 FGVLQAVSNLG  292 (402)
T ss_pred             HHHHHHHHHHH
Confidence            66655554433

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=2.7e-25  Score=193.97  Aligned_cols=243  Identities=15%  Similarity=0.099  Sum_probs=192.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhhccccchhhhHHHHHH
Q 013992           69 LLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYIS  148 (432)
Q Consensus        69 ~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~  148 (432)
                      ...|++.+...+...+.+++.|.+.||+|+|..+++|++++..+++++++.++++.+++.|.+||+|.+...+...++++
T Consensus       106 ~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsglamlA  185 (464)
T KOG3764|consen  106 TQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLAMLA  185 (464)
T ss_pred             cchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHHHHH
Confidence            34499999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCccc-chhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHHHHHHHHHhhcCCCHHHHHHcCCHHHHHH
Q 013992          149 EASPAKI-RGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQA  227 (432)
Q Consensus       149 ~~~~~~~-R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~  227 (432)
                      |.+|+++ |++++|+.-.+.++|..+||+.++.+.+..| .+..|++.++++++-..+.+++-|..+             
T Consensus       186 d~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~G-k~aPFlVL~~v~Lld~~L~l~vi~p~~-------------  251 (464)
T KOG3764|consen  186 DVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAG-KSAPFLVLAIVLLLDGALQLLVIEPTE-------------  251 (464)
T ss_pred             HHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcC-CcCcHHHHHHHHHHHHHHHHheeCccc-------------
Confidence            9999755 7999999999999999999999999999988 999999999999988888555533311             


Q ss_pred             HHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhHHHhhcccchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcC
Q 013992          228 ILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSG  307 (432)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (432)
                                               .+++...+..+.++++++|..+..........     .......-.++.+..+..
T Consensus       252 -------------------------~~~~~~~~~~~~~~Ll~dP~I~~~agai~~~n-----~~lafLePtlslwm~e~m  301 (464)
T KOG3764|consen  252 -------------------------MDPDSTEQGTPMWSLLMDPYILLIAGAITFSN-----SSLAFLEPTLSLWMLETM  301 (464)
T ss_pred             -------------------------cCccccccCccHHHHHhCchHhhhhcchhhcc-----chHHHhCcccHHHHHHhc
Confidence                                     01112334556789999998865333222111     122233333445455554


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhhHhHHHHHHHH
Q 013992          308 FASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILS  355 (432)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  355 (432)
                      ..+.-+.++..++..+...++..+.|.+.||++..+++.....+..++
T Consensus       302 ~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G  349 (464)
T KOG3764|consen  302 FTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVG  349 (464)
T ss_pred             cCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHH
Confidence            555557889999999999999999999999999654444444344444

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.90  E-value=7.7e-24  Score=183.88  Aligned_cols=145  Identities=21%  Similarity=0.211  Sum_probs=119.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhhccccchhhhHHHH
Q 013992           67 KTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLY  146 (432)
Q Consensus        67 ~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~  146 (432)
                      .....|++.+.+.+...+.++.+|.++||+|||++++++++...+..++.+.++|+..+++.|++.|+..| ......++
T Consensus        66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kg-nl~v~rAi  144 (451)
T KOG2615|consen   66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKG-NLSVIRAI  144 (451)
T ss_pred             cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-chHHHHHH
Confidence            34445999999999999999999999999999999999999999999999999999777778999999988 45667799


Q ss_pred             HHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccC---CCCchHHHH--HhhHHHHHH-HHHHHhhcCCC
Q 013992          147 ISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTR---APGTWRWML--GVAGIPALL-QFILMLLLPES  212 (432)
Q Consensus       147 i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~---~~~~wr~~f--~~~~~~~~~-~~~~~~~~~e~  212 (432)
                      ++|.+++|+|+++++.++...++|.++||.+++++..   ..+....++  ++..+.... .....+++||+
T Consensus       145 isdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpET  216 (451)
T KOG2615|consen  145 ISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPET  216 (451)
T ss_pred             HHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            9999999999999999999999999999999999987   333222222  112222222 33446778998

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.90  E-value=3.3e-22  Score=188.07  Aligned_cols=279  Identities=14%  Similarity=0.054  Sum_probs=187.9

Q ss_pred             hcccceeccccchhhhhh-hhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHH--
Q 013992           40 GLLFGYDTGVISGALLYI-RDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIM--  116 (432)
Q Consensus        40 ~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~--  116 (432)
                      .++.+.......+.+|.. .+++|.+..+.   +++.+.+.++..+++++.|+++||+|||+.++.+.....++....  
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~---g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~   87 (396)
T TIGR00882        11 FFLYFFIMSAYFPFFPIWLHDVNGLSKTDT---GIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFI   87 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence            344444455566666654 56789988888   999999999999999999999999999999988776665544322  


Q ss_pred             -HHhC-----ChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHH
Q 013992          117 -AAAP-----NPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRW  190 (432)
Q Consensus       117 -~~~~-----~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~  190 (432)
                       .+.+     .....++.|++.|++.+...+....+..|..+  ++++..+......++|.++++.+++.+.+.  +||+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~--~~~~  163 (396)
T TIGR00882        88 YVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILFSI--DPQI  163 (396)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhhcc--CchH
Confidence             2222     23345667888898888888888777777533  345666777788899999999999988765  5999


Q ss_pred             HHHhhHHHHHHHHHHHhh-cCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhHHHhhc
Q 013992          191 MLGVAGIPALLQFILMLL-LPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLK  269 (432)
Q Consensus       191 ~f~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (432)
                      .|++.++..++..++.+. .||+|+.       ++..+                       ..+.++++.+.++.++.+|
T Consensus       164 ~f~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-----------------------~~~~~~~~~~~~~~~~~l~  213 (396)
T TIGR00882       164 VFWLGSGFALILMLLLMFAKPKAPSS-------ATVAN-----------------------ALGANASAFSLKLALELFR  213 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCchh-------hhhhc-----------------------ccccccCCCCHHHHHHHHc
Confidence            999988877776655444 3443220       00000                       0000011122345678899


Q ss_pred             ccchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcC---CCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhhH
Q 013992          270 TRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSG---FASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLV  346 (432)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~  346 (432)
                      +|+++...+..+....     .+.....+.+.|+++..   +.+....+.......+...++.+..+++.||+++|+.+.
T Consensus       214 ~~~~~~~~l~~~~~~~-----~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~  288 (396)
T TIGR00882       214 QRKFWMFVLYVVGVAC-----VYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALL  288 (396)
T ss_pred             CCcHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHH
Confidence            9987654443322221     33344445666666543   233445677777777888889999999999999999988


Q ss_pred             hHHHHHHHHHHHHH
Q 013992          347 ISLSGVILSLGVLS  360 (432)
Q Consensus       347 ~~~~~~~~~~~~~~  360 (432)
                      ++..+..+...+..
T Consensus       289 ~~~~l~~l~~~~~~  302 (396)
T TIGR00882       289 IAGTIMSVRIIGSS  302 (396)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88777776554433

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.89  E-value=1.8e-22  Score=191.32  Aligned_cols=272  Identities=15%  Similarity=0.065  Sum_probs=171.2

Q ss_pred             cccchhhhh-hhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHH---HhC---
Q 013992           48 GVISGALLY-IRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMA---AAP---  120 (432)
Q Consensus        48 ~~~~~~~~~-i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~~~---  120 (432)
                      ....+.+|. +.+++|.+..+.   +++.+.+.++..+++++.|+++||+|||++++.+..+..++.....   .++   
T Consensus        27 ~~~~~~~~~~l~~~~g~s~~~~---g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (420)
T PRK09528         27 SSWFSFFPIWLHDINGLSGTDT---GIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQ  103 (420)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555554 556699998888   9999999999999999999999999999999887666554433211   111   


Q ss_pred             --ChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHH
Q 013992          121 --NPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIP  198 (432)
Q Consensus       121 --~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~  198 (432)
                        ......+++++.|.+.....+....+..+ . .++|++.++.......+|..+++.+++.+.+.  +|++.|++.++.
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~--~~~~~f~~~~~~  179 (420)
T PRK09528        104 YNILLGAIVGGIYLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFNI--NPQINFWLGSGS  179 (420)
T ss_pred             HHHHHHHHHHHHHhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHhc--CchHhHHHHHHH
Confidence              11112233444444333333333333322 2 34567788888888999999999999998775  599999998877


Q ss_pred             HHHHHHHHhhcC-CCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhHHHhhcccchhHHH
Q 013992          199 ALLQFILMLLLP-ESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGL  277 (432)
Q Consensus       199 ~~~~~~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (432)
                      .++..+..++.+ |+++... +.  ++                           +.+++++.+..+.++.+|+|.++...
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~-~~--~~---------------------------~~~~~~~~~~~~~~~~l~~~~~~~l~  229 (420)
T PRK09528        180 ALILLVLLFFAKPDAPSTAK-VA--NA---------------------------LGANASAVSLKDALALLKLPKFWFLV  229 (420)
T ss_pred             HHHHHHHHhcccccccchhh-hc--cc---------------------------hhcccccccHHHHHHHccCCCeEeeh
Confidence            776666655543 3321000 00  00                           00001111223445678888877644


Q ss_pred             HHHHHHHHHhhhcchHHHHHhHHHHHHHcC---CCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhhHhHHHHHHH
Q 013992          278 IAGVGLQVFQQFVGINTVMYYSPTIVQLSG---FASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVIL  354 (432)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~  354 (432)
                      +..+....     .+.....+.|.|+.+..   +.+....+.......+...++.++.|++.||+++|+.+..+..+..+
T Consensus       230 l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~  304 (420)
T PRK09528        230 LYVIGVAC-----FYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAV  304 (420)
T ss_pred             HHHHHHHH-----HHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence            43222222     22233334555554331   33345667777777888889999999999999999998888777777


Q ss_pred             HHHHHHH
Q 013992          355 SLGVLSA  361 (432)
Q Consensus       355 ~~~~~~~  361 (432)
                      ...++.+
T Consensus       305 ~~~l~~~  311 (420)
T PRK09528        305 RIIGSGF  311 (420)
T ss_pred             HHHHHHh
Confidence            6655543

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.89  E-value=3e-23  Score=196.65  Aligned_cols=342  Identities=17%  Similarity=0.137  Sum_probs=235.7

Q ss_pred             CChhHHHHHHHHHHhhcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHH
Q 013992           25 KNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILV  104 (432)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~  104 (432)
                      ...+-|.+++..++..+...-....++...+.+.++++.+..+.   +|+.++......+..|+.+.+.||||.|++.+.
T Consensus        40 dGG~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~---~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~  116 (509)
T KOG2504|consen   40 DGGWGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQI---AWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIA  116 (509)
T ss_pred             CCCeeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHH---HHHHHHHHHHHHHhccHHHHHHhhcCchHHHHH
Confidence            56778888888877777665556667789999999999988887   999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCChhHHHHHH-hhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccC
Q 013992          105 ADFLFFVGAVIMAAAPNPGALITGR-VFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTR  183 (432)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~r-~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~  183 (432)
                      |.++.+++.++.+++++++++++.. ++.|+|.|..+......+..+|++| |+.+.|+...+.++|..+-|.+...+.+
T Consensus       117 G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kk-R~lA~Gia~~GsG~G~~~~~~l~~~l~~  195 (509)
T KOG2504|consen  117 GGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKK-RALATGIAVSGTGVGTVVFPPLLKYLLS  195 (509)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHH-HHHHHhhhhccCCcceeeHHHHHHHHHH
Confidence            9999999999999999999988876 8899999999999999999888655 9999999999999999999999999998


Q ss_pred             CCCchHHHHHhhHHHHHHHHHHHhhcCC-CHHHHHHcCCHHHHHHH---HHHhC--------CCCchHHHHHHHHHHhHH
Q 013992          184 APGTWRWMLGVAGIPALLQFILMLLLPE-SPRWLYRKGREEEAQAI---LRKVY--------PAHEVETEIRDLKESVDK  251 (432)
Q Consensus       184 ~~~~wr~~f~~~~~~~~~~~~~~~~~~e-~~~~~~~~~~~~~~~~~---~~~~~--------~~~~~~~~~~~~~~~~~~  251 (432)
                      ..| ||+.+++.+.+.+-..+....+++ +++. .++ ..++.+..   .+...        ..+..... .........
T Consensus       196 ~~G-~r~~~l~~~~~~l~~~~~~~~~rp~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  271 (509)
T KOG2504|consen  196 KYG-WRGALLIFGGISLNVLVAGALLRPLSPPK-KPN-EEKDLRNSAASVESTPKPVELRISERDSGLKK-LSLSNLATL  271 (509)
T ss_pred             HhC-cHHHHHHHHHHHHHHHHHHHHcCCCCcCC-Cch-hhhhhccccccccccccccccccccCCCCCCc-ccccchhhh
Confidence            888 999999988877666666444433 2210 000 00000000   00000        00000000 000000000


Q ss_pred             HH--HHcc--Cccchh---HHHhhcccchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHH
Q 013992          252 EI--EEEG--SSEKIN---LVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGL  324 (432)
Q Consensus       252 ~~--~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (432)
                      ++  ++..  ..+...   ..++++++.++...+...+..     .++.....++|.|....+.. ..++..+..+.++.
T Consensus       272 ~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~-----~g~~~p~~~l~~~~~~~g~~-~~~aa~l~Siigi~  345 (509)
T KOG2504|consen  272 KRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAY-----LGFNVPFVYLPSYAKSLGLS-SNDAAFLLSIIGVS  345 (509)
T ss_pred             hhCCccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHH-----HHHHHHHHHHHHHHhhcCCC-hhhhHHHHHHHHHh
Confidence            00  0000  111112   268888887766555444433     37888888999999966655 66677777778999


Q ss_pred             HHHHHHHHHHHHhhhCCchhhHhHHHHHHHHHHHHHHHHhccCCCCCccchhccccc
Q 013992          325 NAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHF  381 (432)
Q Consensus       325 ~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (432)
                      .++++++.|++.|+...++.......+...++..+... ...+.+.+....+.+++.
T Consensus       346 ~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p-~~~~~~~l~~~~~~fG~~  401 (509)
T KOG2504|consen  346 DIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLP-FATTYVGLIVFSILFGFC  401 (509)
T ss_pred             hhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHH
Confidence            99999999999999885444444333333333332222 223334444445555544

>PTZ00207 hypothetical protein; Provisional

Probab=99.89  E-value=1.9e-21  Score=185.88  Aligned_cols=178  Identities=13%  Similarity=0.111  Sum_probs=140.6

Q ss_pred             CChhHHHHHHHHHHhhcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHH
Q 013992           25 KNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILV  104 (432)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~  104 (432)
                      +.++||..+..........+.. ..++...|.+.+++|.+..+.   +++.++. ......+++.|++.||+|||+++++
T Consensus        22 ~e~~Rw~~lva~~~~~~~~g~~-y~fsv~s~~L~~~lgls~~~l---~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vlli   96 (591)
T PTZ00207         22 NEPRRFALLVLGAFCSICTSFM-YAFNLISGAMQARYNLTQRDL---STITTVG-IAVGYFLLPYSFIYDYLGPRPIFVL   96 (591)
T ss_pred             cccchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCcCHHHH---HHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHH
Confidence            3456676666555544444433 346678889999999998887   7777663 3445678889999999999999999


Q ss_pred             HHHHHHHHHHHHHHh------CChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHH-HHHH
Q 013992          105 ADFLFFVGAVIMAAA------PNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFL-SYLI  177 (432)
Q Consensus       105 ~~~~~~~~~~~~~~~------~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i-~~~i  177 (432)
                      +.+++++++++++++      ++++.+.+.|++.|++.+...+.+...+.+||| ++||++.++...+..+|.++ +++.
T Consensus        97 g~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~  175 (591)
T PTZ00207         97 SMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQ  175 (591)
T ss_pred             HHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999997      689999999999999999999999999999997 67999999999999999976 5555


Q ss_pred             HhhccCCCCchHHHHHhhHHHHHHHHHH-HhhcCC
Q 013992          178 NLAFTRAPGTWRWMLGVAGIPALLQFIL-MLLLPE  211 (432)
Q Consensus       178 ~~~l~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e  211 (432)
                      ..++.  . +|+..|++.++..++..++ +.++++
T Consensus       176 ~~l~~--~-~~~~~fl~l~vl~~vv~ll~~~~vr~  207 (591)
T PTZ00207        176 LAFFS--D-NTSAYFFFLMSFALVVGILAIVFMRL  207 (591)
T ss_pred             HHHHH--H-hHHHHHHHHHHHHHHHHHHHHhheeC
Confidence            54443  2 4999888888777766555 444433

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.89  E-value=6.9e-22  Score=188.87  Aligned_cols=171  Identities=11%  Similarity=0.143  Sum_probs=138.8

Q ss_pred             HHHhhcccceecccc-chhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhcc-ccchHHHHHHHHHHHHHH
Q 013992           36 AGIGGLLFGYDTGVI-SGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDR-FGRRTSILVADFLFFVGA  113 (432)
Q Consensus        36 ~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~  113 (432)
                      +++..+...+..... .....++.+++|.++.+.   +++.+.+.....+..+++|+++|| +||||+++.+.+++.++.
T Consensus        19 ~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a---~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~   95 (489)
T PRK10207         19 IFFVELWERFGYYGVQGILAVFFVKQLGFSQEQA---FITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGY   95 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHH
Confidence            333444444444333 345556778899988888   889999988888888999999999 999999999999999999


Q ss_pred             HHHHHhCChhH-HHHHHhhhhccccchhhhHHHHHHhcCCccc--chhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHH
Q 013992          114 VIMAAAPNPGA-LITGRVFVGLGVGMASMTSPLYISEASPAKI--RGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRW  190 (432)
Q Consensus       114 ~~~~~~~~~~~-~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~--R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~  190 (432)
                      ++++++++... +.++|+++|+|.|...+...+++.|.+|+++  |++++++++.+.++|..+||.+++++.+..+ ||+
T Consensus        96 ~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~g-w~~  174 (489)
T PRK10207         96 FMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFG-YSV  174 (489)
T ss_pred             HHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhC-hHH
Confidence            99999877554 4589999999999999999999999999874  5788999999999999999999999999887 999


Q ss_pred             HHHhhHHHHHHHHHHHhhcC
Q 013992          191 MLGVAGIPALLQFILMLLLP  210 (432)
Q Consensus       191 ~f~~~~~~~~~~~~~~~~~~  210 (432)
                      .|++.++..++..+.+.+.+
T Consensus       175 ~F~i~~i~~~~~~~~~~~~~  194 (489)
T PRK10207        175 TYNLCGAGLIIALLVYFACR  194 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHcc
Confidence            99987654443444444443

>TIGR00889 2A0110 nucleoside transporter

Probab=99.88  E-value=4e-22  Score=187.87  Aligned_cols=321  Identities=13%  Similarity=0.044  Sum_probs=203.2

Q ss_pred             cccceecccc-chhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccc-hHHHHHHHHHHHHHHHHHHH
Q 013992           41 LLFGYDTGVI-SGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGR-RTSILVADFLFFVGAVIMAA  118 (432)
Q Consensus        41 ~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Gr-r~~l~~~~~~~~~~~~~~~~  118 (432)
                      +..+...... ++..+++.+++|.+..+.   |++.+++.++..++++++|+++||+|| |+++.++.++..++..+..+
T Consensus        12 ~~~~~~~~~~~~~l~~~l~~~~g~s~~~i---Gl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~   88 (418)
T TIGR00889        12 FLQWFIWGSWLVTLGSYMSKTLHFSGAEI---GWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQ   88 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444 455566778899998888   999999999999999999999999965 77888888888888888899


Q ss_pred             hCChhHHHHHHhhhhccccchhhhHHHHHH--------hcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHH
Q 013992          119 APNPGALITGRVFVGLGVGMASMTSPLYIS--------EASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRW  190 (432)
Q Consensus       119 ~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~--------~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~  190 (432)
                      .++++.+.+.|++.|++.+...+...+...        |......|.+..|      .+|.++++.+++.+.... .|+.
T Consensus        89 ~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~-~~~~  161 (418)
T TIGR00889        89 VTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIEL-SNIQ  161 (418)
T ss_pred             hcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccc-hhHH
Confidence            999999999999999987777666555432        2233334555554      367888888888773332 2654


Q ss_pred             HHHhhHHHHHHHHHHHhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhHHHhhcc
Q 013992          191 MLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKT  270 (432)
Q Consensus       191 ~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (432)
                       |++.++..++..+..+++||+|+.   ++++++                         +.  +   +..+.+.++.+|+
T Consensus       162 -f~~~~~~~~~~~~~~~~~~e~~~~---~~~~~~-------------------------~~--~---~~~~~~~~~~~k~  207 (418)
T TIGR00889       162 -LYITAGSSALLGVFALTLPDIPVA---KSTAKM-------------------------SI--K---VMLGLDAFILFKN  207 (418)
T ss_pred             -HHHHHHHHHHHHHHHhcCCCCCCC---cccccc-------------------------CH--H---HHhhhhHHHHhcC
Confidence             445555455555556677887521   000000                         00  0   0011234567888


Q ss_pred             cchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCc-------hhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCch
Q 013992          271 RTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFAS-------NRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKK  343 (432)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~  343 (432)
                      |+++...+..++...     .......+.+.++++.+.++       ....+.......+..+++.+..|+++||+|+|+
T Consensus       208 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~  282 (418)
T TIGR00889       208 KRMAIFFFFSMLLGA-----PLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKK  282 (418)
T ss_pred             CCeeeHHHHHHHHHh-----HHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence            887665544333322     23344456677777655332       245677778788889999999999999999999


Q ss_pred             hhHhHHHHHHHHHHHHHHHHhcc-CCCCCccchhcccccccccccccccccccCccchhhhhccCCCCccccc
Q 013992          344 LLVISLSGVILSLGVLSAVFHET-TSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCA  415 (432)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~g~~~  415 (432)
                      .+..+..+..+...++....... ..+...+..++.+.......+...   .......|++.|++  +.|+.+
T Consensus       283 ~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~---~~i~~~~p~~~~g~--~~g~~~  350 (418)
T TIGR00889       283 VMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGS---VFVEKEVPVHIRAS--AQGLFT  350 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHCCHHHHHH--HHHHHH
Confidence            99998887777665554421111 011111112222222112111111   22233556699999  888875

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.88  E-value=1.2e-20  Score=163.77  Aligned_cols=284  Identities=17%  Similarity=0.192  Sum_probs=226.0

Q ss_pred             HHHHHHHHHhhcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHH
Q 013992           30 LRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLF  109 (432)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~  109 (432)
                      +..+..+.+..+--=-..+..+|.++.+.+|+|.+....   |++.++..+...+.+++..+++.|+|.++.+..++++.
T Consensus        11 ~~li~gIvlia~NLR~~itsvgPLL~~Ir~~~gls~s~a---GlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli   87 (395)
T COG2807          11 LLLLAGIVLIAFNLRPAITSVGPLLDEIRQDLGLSFSVA---GLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLI   87 (395)
T ss_pred             hHHHHHHHHHHhccchhhhhhhhhHHHHHHHhcccHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHH
Confidence            344444433334333456678999999999999999999   99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchH
Q 013992          110 FVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWR  189 (432)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr  189 (432)
                      +++..+-... +...++.+-.+.|.+.+......+.++-+.||+| -+..+++++.....|..+++.+...+.++.++||
T Consensus        88 ~~G~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~  165 (395)
T COG2807          88 AAGILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWR  165 (395)
T ss_pred             HHHHHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHH
Confidence            9999998887 7888889999999999999999999999999976 6999999999999999999999988888875699


Q ss_pred             HHHHhhHHHHHHHHHHHhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhHHHhhc
Q 013992          190 WMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLK  269 (432)
Q Consensus       190 ~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (432)
                      ....+.++++++.++.|+--...++                                       ....+.+..+..+++|
T Consensus       166 ~aL~~WAl~allAl~~WlPq~~r~~---------------------------------------~~~~~~~~~~~~~vw~  206 (395)
T COG2807         166 GALGFWALLALLALLIWLPQALREQ---------------------------------------AASIATKLVSVRKVWR  206 (395)
T ss_pred             HHHHHHHHHHHHHHHHHhhhccccc---------------------------------------cccccccccccccccc
Confidence            9999999999888877654321100                                       0111112223356889


Q ss_pred             ccchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhC-CchhhHhH
Q 013992          270 TRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTG-RKKLLVIS  348 (432)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~-~~~~~~~~  348 (432)
                      +|.-|...+     ++..+...++....|+|.++.+.+.+ +.+++.+.....+..++..+....+.+|.. +|+.....
T Consensus       207 ~~~aW~vtL-----fmGlqS~~~Y~~~~WLP~ili~~G~s-a~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~  280 (395)
T COG2807         207 SPLAWQVTL-----FMGLQSLLYYIVIGWLPAILIDRGLS-AAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLA  280 (395)
T ss_pred             CchhHHHHH-----HHHhhHHHHHHHHHHHHHHHHHcCCC-HHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHH
Confidence            998877443     44555568899999999999998877 667777777788999999999999999765 45556666


Q ss_pred             HHHHHHHHHHHHHHH
Q 013992          349 LSGVILSLGVLSAVF  363 (432)
Q Consensus       349 ~~~~~~~~~~~~~~~  363 (432)
                      ..++.++.+.+.+..
T Consensus       281 ~~~~l~G~~G~~~~P  295 (395)
T COG2807         281 LLLMLVGLVGLLLAP  295 (395)
T ss_pred             HHHHHHHHHHHHHhh
Confidence            666666666665543

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.87  E-value=5.9e-22  Score=189.08  Aligned_cols=265  Identities=15%  Similarity=0.104  Sum_probs=185.0

Q ss_pred             hhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhcc----ccchH-HHHHHHHHHHHHHHHHHHhCC------
Q 013992           53 ALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDR----FGRRT-SILVADFLFFVGAVIMAAAPN------  121 (432)
Q Consensus        53 ~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr----~Grr~-~l~~~~~~~~~~~~~~~~~~~------  121 (432)
                      ..+++.+++|+++.+.   |++.++..+..++..|+.|+++||    +|||| .++.+....+++.+++...++      
T Consensus        22 l~~~~~~~~g~s~~~~---g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~   98 (437)
T TIGR00792        22 LLFFYTDVLGLSAAFV---GTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGK   98 (437)
T ss_pred             HHHHHHHccCCCHHHH---HHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchH
Confidence            4566778899998888   999999999999999999999997    68754 567788888888888877664      


Q ss_pred             hhHHHHHHhhhhccccchhhhHHHHHHhcC-CcccchhHHHHHHHHHHHHHHHHHHHHhhcc-------CCCCchHHHHH
Q 013992          122 PGALITGRVFVGLGVGMASMTSPLYISEAS-PAKIRGALVSTNGFLITSGQFLSYLINLAFT-------RAPGTWRWMLG  193 (432)
Q Consensus       122 ~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~-------~~~~~wr~~f~  193 (432)
                      ...+++.+++.+++.+...+...++..|.. ++++|++..++.+.+..+|..++..+.+.+.       +.. +||+.+.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~-g~~~~~~  177 (437)
T TIGR00792        99 LVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKF-GWFMFAL  177 (437)
T ss_pred             HHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccc-cHHHHHH
Confidence            345667788888888877777778888987 4688999999988888888777665544333       123 4999999


Q ss_pred             hhHHHHHHHHHH-HhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhHHHhhcccc
Q 013992          194 VAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRT  272 (432)
Q Consensus       194 ~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (432)
                      +.+++.++..+. ++..+|+++     .+++                             +++++.+.....++++++|.
T Consensus       178 i~~~l~~~~~~~~~~~~~e~~~-----~~~~-----------------------------~~~~~~~~~~~~~~l~~~~~  223 (437)
T TIGR00792       178 VLALIGVVSLIICFFGTKERYS-----EIPK-----------------------------NIEKKLSLKQIFKALFKNDQ  223 (437)
T ss_pred             HHHHHHHHHHHHHHcCCEecCC-----CCCc-----------------------------ccccCCCHHHHHHHHhCCHH
Confidence            988877766655 555666531     0000                             00001111234567788888


Q ss_pred             hhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhhHhHHHHH
Q 013992          273 VRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGV  352 (432)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~  352 (432)
                      ++...+..++...     .......+.+.|.+...+. ....+.......++.+++.++.+++.||+|+|+.+..+..+.
T Consensus       224 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~  297 (437)
T TIGR00792       224 LLILCLAYLFYNL-----AFNIKNGVQVYYFTYVLGD-PELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLM  297 (437)
T ss_pred             HHHHHHHHHHHHH-----HHHHHcchhheeEeeecCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            7764443333222     2333333445555444443 445555666678889999999999999999999998888777


Q ss_pred             HHHHHHHHH
Q 013992          353 ILSLGVLSA  361 (432)
Q Consensus       353 ~~~~~~~~~  361 (432)
                      .++.+.+.+
T Consensus       298 ~~~~~~~~~  306 (437)
T TIGR00792       298 VLGYLIFFF  306 (437)
T ss_pred             HHHHHHHHH
Confidence            776655544

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.86  E-value=2.1e-20  Score=178.63  Aligned_cols=169  Identities=14%  Similarity=0.218  Sum_probs=144.1

Q ss_pred             HHhhcccceeccccchhhhhh-hhc--cccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhcc-ccchHHHHHHHHHHHHH
Q 013992           37 GIGGLLFGYDTGVISGALLYI-RDD--FKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDR-FGRRTSILVADFLFFVG  112 (432)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~i-~~~--~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~~~  112 (432)
                      ++..+...+......+.+|.+ .++  +|.+..+.   +++.+.+.++..++++++|+++|| +|||++++.+.++.+++
T Consensus        16 ~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~a---g~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g   92 (475)
T TIGR00924        16 FFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQA---FIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLG   92 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHH---HHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHH
Confidence            344455555555556666655 444  88888888   999999999999999999999999 89999999999999999


Q ss_pred             HHHHHHhCChhHHHHHHhhhhccccchhhhHHHHHHhcCCccc---chhHHHHHHHHHHHHHHHHHHHHhhccCCCCchH
Q 013992          113 AVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKI---RGALVSTNGFLITSGQFLSYLINLAFTRAPGTWR  189 (432)
Q Consensus       113 ~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~---R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr  189 (432)
                      .++.+++++++.+.++|.+.|++.|...+...++++|++|+++   |++++++++.+.++|..+|+.+++++.+..+ ||
T Consensus        93 ~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g-~~  171 (475)
T TIGR00924        93 HFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYG-YH  171 (475)
T ss_pred             HHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcC-hH
Confidence            9999999999999999999999999999999999999998765   8889999999999999999999999988777 99


Q ss_pred             HHHHhhHHHHHHHHHHHhhc
Q 013992          190 WMLGVAGIPALLQFILMLLL  209 (432)
Q Consensus       190 ~~f~~~~~~~~~~~~~~~~~  209 (432)
                      +.|.+.++..++..+.+++.
T Consensus       172 ~~f~~~~~~~~~~~l~~~~~  191 (475)
T TIGR00924       172 VGFNLAAVGMVIGLLTFFAG  191 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHc
Confidence            99999886555554444443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.86  E-value=5.3e-21  Score=182.26  Aligned_cols=332  Identities=13%  Similarity=0.084  Sum_probs=229.1

Q ss_pred             HHHHhhcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHH
Q 013992           35 SAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAV  114 (432)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~  114 (432)
                      .++++.+++.+...+.....+.+..+..-++...   +++..+..+...+.++++|.++||++|||+++.+.++..+..+
T Consensus        14 ~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~v---alv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~   90 (524)
T PF05977_consen   14 RLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMV---ALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVAL   90 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH---HHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Confidence            3445555556666666677777776665555555   9999999999999999999999999999999999888776655


Q ss_pred             HHHH-----hCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchH
Q 013992          115 IMAA-----APNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWR  189 (432)
Q Consensus       115 ~~~~-----~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr  189 (432)
                      ..++     ..+.+.+++.-++.|++.+...|...+++.|..|+++...+.++.+...++...+||.++|.+....| -.
T Consensus        91 ~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G-~~  169 (524)
T PF05977_consen   91 LLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFG-AA  169 (524)
T ss_pred             HHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHH-HH
Confidence            4433     24788899999999999999999999999999999999999999999999999999999999988766 78


Q ss_pred             HHHHhhHHHHHHHHHHHhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhHHHhhc
Q 013992          190 WMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLK  269 (432)
Q Consensus       190 ~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (432)
                      +.|.+.++..++........++.++    +++.++                             +...+.-+...+-..+
T Consensus       170 ~~f~inalsfl~~i~~l~~~~~~~~----~~~~~~-----------------------------e~~~~~l~~G~ryv~~  216 (524)
T PF05977_consen  170 AAFLINALSFLISILALLRWKPPPP----PSSLPR-----------------------------ERFFSALREGLRYVRS  216 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHcccccc----ccccch-----------------------------hhhhhhHHHHHHHHhc
Confidence            8888887765555444444433211    000000                             0000011123334445


Q ss_pred             ccchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhhHhHH
Q 013992          270 TRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISL  349 (432)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~  349 (432)
                      +|.++..++......+     ....+...+|.+.++..+.++...|++....+++.++|.++.+++.+|+++++.+..+.
T Consensus       217 ~~~l~~~l~~~~~~~l-----~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~  291 (524)
T PF05977_consen  217 SPPLRSVLLRSFLFNL-----FASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLAS  291 (524)
T ss_pred             chHHHHHHHHHHHHHH-----hhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHH
Confidence            5555543333222222     22334456788888777777888899999999999999999999999999888888887


Q ss_pred             HHHHHHHHHHHHHHhccCCCCCccchhcccccccccccccccccccCccchhhhhccCCCCcccccc
Q 013992          350 SGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCAS  416 (432)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~g~~~~  416 (432)
                      .+.+++++.+.+..   +.+......++.|.........+.   ...+...|+++||+  ..++...
T Consensus       292 ~~~a~~~~~lal~~---~~~~~~~~l~l~G~~~~~~~~~~~---t~~Q~~~P~~~~GR--v~si~~~  350 (524)
T PF05977_consen  292 LLFALALLLLALSP---SFWLALIALFLAGAAWIIANSSLN---TLVQLSVPDWVRGR--VFSIYQM  350 (524)
T ss_pred             HHHHHHHHHHhcch---HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhCCHHHHhH--HHHHHHH
Confidence            77776665555532   222223333333333333222222   33455666799999  7776543

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.85  E-value=2e-20  Score=175.56  Aligned_cols=275  Identities=12%  Similarity=0.017  Sum_probs=190.1

Q ss_pred             HHHHHHhhcccceeccccchhhhhhhhccccchhhhHHHHHH--HHHHHHHHHHHHHhhhh-hhccccchHHHHHHHHHH
Q 013992           33 AFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESI--VSMAVAGAIIGAAIGGW-MNDRFGRRTSILVADFLF  109 (432)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~s~~~~~~~i~~~~~g~-l~dr~Grr~~l~~~~~~~  109 (432)
                      +..++..++.+++......+.+|.+.+|.|.+..+.   |+.  .++..+...+.+|+++. ..||+||||..+....+.
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~i---Gl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~   79 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTAL---AFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCL   79 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHH
Confidence            345556678889888889999999999999998888   886  46667778788888854 789999999876655332


Q ss_pred             -HHHHHHHH-H--hCC-hhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCC
Q 013992          110 -FVGAVIMA-A--APN-PGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRA  184 (432)
Q Consensus       110 -~~~~~~~~-~--~~~-~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~  184 (432)
                       .......+ +  ..+ ...++...++.++..+...+..-++..|..++++++...+....+..+|..+++...+++.+.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~  159 (390)
T TIGR02718        80 VSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGK  159 (390)
T ss_pred             HHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             22222222 1  222 333344445556666667777777888998888888888888888899999999888888887


Q ss_pred             CCchHHHHHhhHHHHHHHHHHHhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhH
Q 013992          185 PGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINL  264 (432)
Q Consensus       185 ~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (432)
                      .+ ||..|++.++..++..+..++++|+++    + +.++                                ++++..+.
T Consensus       160 ~g-w~~~f~~~a~l~~~~~~~~~~~~~~~~----~-~~~~--------------------------------~~~~~~~~  201 (390)
T TIGR02718       160 FG-QRPAFLLVACVPLASLVCVLWLKDRAV----A-SPEA--------------------------------PLARRASL  201 (390)
T ss_pred             hC-HHHHHHHHHHHHHHHHHHHHHcCCCCc----C-cccc--------------------------------chhhHHHH
Confidence            77 999999999887776666555544321    0 0000                                00011235


Q ss_pred             HHhhcccchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHH-HHHHHHHHHHHHHHhhhCCch
Q 013992          265 VKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTS-GLNAAGSIVSIYFIDRTGRKK  343 (432)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~~~~~  343 (432)
                      ++.+|+|.++......++...     .......+.+.|+++.+ .++.+.+....... ...+++.++.|++.||+++|+
T Consensus       202 ~~~l~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~l~~~G-~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~  275 (390)
T TIGR02718       202 FRFFRRPLAWSLLALALLSAM-----TAVSGFGLSKLYLVDAG-WPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWR  275 (390)
T ss_pred             HHHHcCcCHHHHHHHHHHHHH-----HHHHHHHHhhHHHHhcC-CCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            678888887664443332222     34555557788888864 45667777666554 456778899999999999999


Q ss_pred             hhHhHHHHHHH
Q 013992          344 LLVISLSGVIL  354 (432)
Q Consensus       344 ~~~~~~~~~~~  354 (432)
                      .+..+..+..+
T Consensus       276 ~l~~~~~~~~~  286 (390)
T TIGR02718       276 TFILGVGLAGS  286 (390)
T ss_pred             HHHHHHHHHHH
Confidence            88877665533

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.81  E-value=1.2e-18  Score=167.52  Aligned_cols=162  Identities=17%  Similarity=0.291  Sum_probs=128.2

Q ss_pred             hhcccceeccccch-hhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhcc-ccchHHHHHHHHHHHHHHHHH
Q 013992           39 GGLLFGYDTGVISG-ALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDR-FGRRTSILVADFLFFVGAVIM  116 (432)
Q Consensus        39 ~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~  116 (432)
                      ..+...+....... ...++.+++|.+..+.   +++.+.+........+++|+++|| +|||++++.+.++.+++..++
T Consensus        29 ~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a---~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~  105 (500)
T PRK09584         29 IELWERFGYYGLQGIMAVYLVKQLGMSEADS---ITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALV  105 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence            33334333333333 4445668899988877   677777666555666789999999 599999999999999999999


Q ss_pred             HHhC-ChhHHHHHHhhhhccccchhhhHHHHHHhcCCccc--chhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHH
Q 013992          117 AAAP-NPGALITGRVFVGLGVGMASMTSPLYISEASPAKI--RGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLG  193 (432)
Q Consensus       117 ~~~~-~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~--R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~  193 (432)
                      ++++ +.+.+.++|+++|++.|...+...+++.|++|+++  |..++++++.+.++|..++|.+++++.+..+ ||+.|+
T Consensus       106 ~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g-~~~~F~  184 (500)
T PRK09584        106 AWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYG-WSVAFA  184 (500)
T ss_pred             HHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhC-HHHHHH
Confidence            8875 56667788999999999999998899999998654  4567888899999999999999999998877 999999


Q ss_pred             hhHHHHHHHHH
Q 013992          194 VAGIPALLQFI  204 (432)
Q Consensus       194 ~~~~~~~~~~~  204 (432)
                      +.++..++..+
T Consensus       185 i~~i~~~i~~i  195 (500)
T PRK09584        185 LSVVGMLITVV  195 (500)
T ss_pred             HHHHHHHHHHH
Confidence            88765444443

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.80  E-value=1.6e-17  Score=148.46  Aligned_cols=351  Identities=12%  Similarity=0.058  Sum_probs=230.5

Q ss_pred             CCChhHHHHHHHHHHhhcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHH
Q 013992           24 WKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSIL  103 (432)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~  103 (432)
                      +..++||..++..++..+.+++.+-.++++..+....|+ +.+..   -|...+|++.+....+++-|+.|++|-|..++
T Consensus        38 rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~---~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~l  113 (480)
T KOG2563|consen   38 RVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAA---DWLSMIYMVVSVPFGFAAMWILDKFGLRTALL  113 (480)
T ss_pred             ccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHH---HHHHHHHHHHHHHHhhHHHHhhcccchHHHHH
Confidence            456889999999999999999999989998888888888 44444   77888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhC------Chh--HHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHH
Q 013992          104 VADFLFFVGAVIMAAAP------NPG--ALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSY  175 (432)
Q Consensus       104 ~~~~~~~~~~~~~~~~~------~~~--~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~  175 (432)
                      ++..+.+++..+-..+.      .++  ....+..+.+.+.-.....-..+..-|||+++|..+..+-..+..+|.+++.
T Consensus       114 lgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~  193 (480)
T KOG2563|consen  114 LGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGF  193 (480)
T ss_pred             HHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHh
Confidence            99999999998876542      344  5667788888877777666667889999999999999999999999999999


Q ss_pred             HHHhhccCCC-----CchHH--HHHhhHHHHHHHHHH-HhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHH
Q 013992          176 LINLAFTRAP-----GTWRW--MLGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKE  247 (432)
Q Consensus       176 ~i~~~l~~~~-----~~wr~--~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (432)
                      ++...+....     ..|..  .|+....++.+.+++ .+..++.|+.-   ...                         
T Consensus       194 llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tP---ps~-------------------------  245 (480)
T KOG2563|consen  194 LLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTP---PSA-------------------------  245 (480)
T ss_pred             hccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC---Cch-------------------------
Confidence            9999887764     13544  344444444333333 33344433210   000                         


Q ss_pred             HhHHHHHHccCccchhHHHhhcccchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHH
Q 013992          248 SVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAA  327 (432)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (432)
                         ...++...+...+.++.++++++....+.     +......++.....+..-+...+ ++...+|.......+++++
T Consensus       246 ---s~~~~~~~~f~~si~~~~~n~~F~il~~~-----ygi~~g~F~~l~~~l~~~l~~sg-Y~~~~aG~ig~l~iv~Gml  316 (480)
T KOG2563|consen  246 ---SQAALQDASFPKSIKSCFKNRQFIILAIC-----YGIGLGLFNSLSTLLNLALCPSG-YEGVFAGYIGALMIVAGML  316 (480)
T ss_pred             ---hHhhhhcCcHHHHHHHHHcCccHHHHHHH-----HhhhHHHHHHHHHHhhhcccccc-CCccccchhHHHHHHHHHH
Confidence               00001122345678899999998543332     21112233333333332333333 3447788999999999999


Q ss_pred             HHHHHHHHHhhhCC-chhhHhHHHHHHHHH-HHHHHHHhccCCCCCccchhcccccccccccccccccccCccchhhhhc
Q 013992          328 GSIVSIYFIDRTGR-KKLLVISLSGVILSL-GVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLK  405 (432)
Q Consensus       328 ~~~~~g~l~d~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r  405 (432)
                      +.++.|.+.||.++ |.+..+......++. .+..........+.+......++++.....+...-...|..-.   ..-
T Consensus       317 ga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyP---v~E  393 (480)
T KOG2563|consen  317 GALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYP---VAE  393 (480)
T ss_pred             HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccc---cCC
Confidence            99999999999876 444555555444442 2222222233333444445555555544444332222222222   333


Q ss_pred             cCCCCcccccccccc
Q 013992          406 ASSPDCGFCASHSNK  420 (432)
Q Consensus       406 ~~~~~~g~~~~~~~~  420 (432)
                      ++  .+|+.....+.
T Consensus       394 ~t--SsGll~~~gq~  406 (480)
T KOG2563|consen  394 GT--SSGLLNLSGQI  406 (480)
T ss_pred             cc--cceeEEeehhH
Confidence            44  47766555443

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.78  E-value=2.4e-18  Score=163.39  Aligned_cols=302  Identities=17%  Similarity=0.139  Sum_probs=210.1

Q ss_pred             hhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhc----cccchHHHH-HHHHHHHHHHHHHHHh-C-----
Q 013992           52 GALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMND----RFGRRTSIL-VADFLFFVGAVIMAAA-P-----  120 (432)
Q Consensus        52 ~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d----r~Grr~~l~-~~~~~~~~~~~~~~~~-~-----  120 (432)
                      ...+++.+.+|+++...   +.+..+..+..++..|+.|.++|    |+||||..+ .+.+..+++.++.... +     
T Consensus        23 ~~~~f~~~~~gl~~~~~---g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~   99 (428)
T PF13347_consen   23 YLLYFYTDVLGLSPALA---GLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSF   99 (428)
T ss_pred             HHHHHHHHHcCCCHHHH---HHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhh
Confidence            44566777789988777   99999999999999999999999    899776654 6778888887777765 4     


Q ss_pred             --ChhHHHHHHhhhhccccchhhhHHHHHHhcCC-cccchhHHHHHHHHHHHHHHHHHHHHhhccCCCC------chHHH
Q 013992          121 --NPGALITGRVFVGLGVGMASMTSPLYISEASP-AKIRGALVSTNGFLITSGQFLSYLINLAFTRAPG------TWRWM  191 (432)
Q Consensus       121 --~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~------~wr~~  191 (432)
                        ....+.+..++..++......+..++..|..+ +++|.+..+.-..+..+|..+...+.+.+.+..+      +|++.
T Consensus       100 ~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~  179 (428)
T PF13347_consen  100 TAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWM  179 (428)
T ss_pred             hhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHH
Confidence              22335666777788888888888899999998 5789999999888888888766666665554322      59999


Q ss_pred             HHhhHHHHHHHHHH-HhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhHHHhhcc
Q 013992          192 LGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKT  270 (432)
Q Consensus       192 f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (432)
                      .++.+++.++..++ .+..+|+++                                   +.++++++.+-....++.++|
T Consensus       180 ~~v~~iv~~v~~~i~~~~~ke~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~n  224 (428)
T PF13347_consen  180 ALVLAIVGLVFFLITFFFVKERSV-----------------------------------EVTEQEKKISLRDSLRSLFRN  224 (428)
T ss_pred             HHHHHHHHHHHhhhhhheeeeccc-----------------------------------cccccccccccccchhhhccc
Confidence            99888877776666 555666211                                   011122223334567888899


Q ss_pred             cchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhhHhHHH
Q 013992          271 RTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLS  350 (432)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~  350 (432)
                      |.++......++...     .........+.|.+...+.+ ...+.......+..+++.++.++++||+|+|+.+..+..
T Consensus       225 r~~~~l~~~~~~~~~-----~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~  298 (428)
T PF13347_consen  225 RPFRILLLAFFLQWL-----AFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLL  298 (428)
T ss_pred             chHHHHHHHHHHHHh-----hhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHH
Confidence            888765544333322     44445555566666665554 445566667788889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhccCCCCCccchhcccccccccccccccccccCcc
Q 013992          351 GVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRW  398 (432)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (432)
                      +.+++.+++.+... .+.+...+..++.+.+.........+..+++.+
T Consensus       299 ~~~~~~~~~~~~~~-~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id  345 (428)
T PF13347_consen  299 LAALGFLLLFFLGP-GSPWLVLILFILAGIGYGAFFVIPWAMLADVID  345 (428)
T ss_pred             HHHHHHHHHHHHHh-hhHHHHHHHHHHhHhhhcccccccccccccchh
Confidence            99888877766653 233344444444444444433333333344443

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.78  E-value=8.1e-20  Score=152.49  Aligned_cols=351  Identities=16%  Similarity=0.037  Sum_probs=227.4

Q ss_pred             ChhHHHHHHHHHHhhcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhcc-ccchHHHHH
Q 013992           26 NPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDR-FGRRTSILV  104 (432)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~  104 (432)
                      ..+|...+..+|+..|-+++.....+....+...+.+++..+.   .++.+.|..-..+.+.++|++.|| +|-|..-++
T Consensus        39 l~hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akf---tLlYsvYSwPNvVlcffgGflidr~fgir~gtii  115 (459)
T KOG4686|consen   39 LGHRFMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKF---TLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTII  115 (459)
T ss_pred             hhhHHHHHHHHHHhcccceeecCCchhhhhhhhcccccceeee---eeeeeeccCCCEEEeeecceeehhhhhhhHHHHH
Confidence            4567778888888889999999988888888888888888787   889999999999999999999995 788877777


Q ss_pred             HHHHHHHHHHHHH---HhCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhc
Q 013992          105 ADFLFFVGAVIMA---AAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAF  181 (432)
Q Consensus       105 ~~~~~~~~~~~~~---~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l  181 (432)
                      -++...++.++++   ..+.+|.+.++|++.|+|.-........++..||..||-+.++|+......+|..+-..+.+++
T Consensus       116 ~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~l  195 (459)
T KOG4686|consen  116 LCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFL  195 (459)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHH
Confidence            6667777777665   4689999999999999999888888889999999999999999999999999998877777766


Q ss_pred             cCCCCch-----HHHH---HhhH-HHHHHHHHHHhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHH
Q 013992          182 TRAPGTW-----RWML---GVAG-IPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKE  252 (432)
Q Consensus       182 ~~~~~~w-----r~~f---~~~~-~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (432)
                      .+..+..     ....   .... ..+....+..+-+    .|.     +++++..+.                    .+
T Consensus       196 y~~~~~~~~~~ghT~LG~~l~~~~~tc~~slical~l----g~~-----D~rAerilh--------------------~e  246 (459)
T KOG4686|consen  196 YDTMGRMFPGVGHTLLGLWLCFEVKTCKQSLICALSL----GLS-----DDRAERILH--------------------LE  246 (459)
T ss_pred             HHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHh----hhh-----hhHHHHHHh--------------------hh
Confidence            6542200     0000   0000 0111111111100    000     011111000                    00


Q ss_pred             HHHccCccchhHHHhhcccchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHH
Q 013992          253 IEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVS  332 (432)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (432)
                      +....+..+.....-++ |.+|...+++++..     ....-+....|.++++..+.++..++...........+..++.
T Consensus       247 ~g~~Ge~pkLtdv~~f~-ppfw~~~iicv~yy-----va~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvf  320 (459)
T KOG4686|consen  247 EGFLGEEPKLTDVNTFY-PPFWVLVIICVLYY-----VAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVF  320 (459)
T ss_pred             cCcccCCcccccccccC-ccHHHHHHHHHHHH-----HHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhH
Confidence            00011111111112222 44555444433332     2556666677888888888878877777777777788999999


Q ss_pred             HHHHhhhCCchhhHhHHHHHHHHHHHHHHHHhccCCCCCccchhcccccccccccccccccccCccchhhhhccCCCCcc
Q 013992          333 IYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCG  412 (432)
Q Consensus       333 g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~g  412 (432)
                      |.++||.|++.+++.+..+..+..=....+....+.....+.++.....+...+       +-+.-.+|++.-++  +.|
T Consensus       321 g~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~lsPy~~m~~lGLsysllAcslW-------P~va~~vpE~qLGT--ayg  391 (459)
T KOG4686|consen  321 GAISDKYGFNLWWVASACILTLLGHSGLFFTFLSPYTSMTFLGLSYSLLACSLW-------PCVASLVPEEQLGT--AYG  391 (459)
T ss_pred             HHhHhhhcceehhHHHHHHHHHHHhhhHHhhhccHHHHHHHHhhhHHHHHHHHh-------hhhhhhCCHHHhcc--hHH
Confidence            999999999988877665554433322222222222222222222222111122       22333678899999  999


Q ss_pred             ccccccccccc
Q 013992          413 FCASHSNKVKG  423 (432)
Q Consensus       413 ~~~~~~~~~~g  423 (432)
                      ++.+..|....
T Consensus       392 f~qsIqNLgla  402 (459)
T KOG4686|consen  392 FIQSIQNLGLA  402 (459)
T ss_pred             HHHHHHhhhhh
Confidence            99999887644

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.77  E-value=1e-16  Score=150.49  Aligned_cols=285  Identities=13%  Similarity=0.092  Sum_probs=182.6

Q ss_pred             ceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhc----cccchHHHHHH-HHHHHHHHHHHHH
Q 013992           44 GYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMND----RFGRRTSILVA-DFLFFVGAVIMAA  118 (432)
Q Consensus        44 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d----r~Grr~~l~~~-~~~~~~~~~~~~~  118 (432)
                      .+......+.++.+.+++|.+....   +++..+..+...+.+|+.|.++|    |+||||.++.+ .+...++.++.++
T Consensus        17 q~~~~l~~~~l~~yl~~lg~~~~~~---~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~   93 (477)
T TIGR01301        17 QFGWALQLSLLTPYVQELGIPHAWA---SIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGF   93 (477)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHh
Confidence            4445556666777788899988777   99999999999999999999999    59999998874 6666666677777


Q ss_pred             hCChh-----------------HHHHHHhhhhccccchhhhHHHHHHhcCCcccc--hhHHHHHHHHHHHHHHHHHHHHh
Q 013992          119 APNPG-----------------ALITGRVFVGLGVGMASMTSPLYISEASPAKIR--GALVSTNGFLITSGQFLSYLINL  179 (432)
Q Consensus       119 ~~~~~-----------------~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R--~~~~~~~~~~~~~g~~i~~~i~~  179 (432)
                      +++..                 .++++-.+..++.....+...++++|.+|+++|  +.+.++.+....+|..+|+.+++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~  173 (477)
T TIGR01301        94 AADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGA  173 (477)
T ss_pred             CchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            76643                 223333344457777888889999999998865  58999999999999999999998


Q ss_pred             hc--cCCC------------CchHHHHHhhHHHHHHHHHH-HhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHH
Q 013992          180 AF--TRAP------------GTWRWMLGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRD  244 (432)
Q Consensus       180 ~l--~~~~------------~~wr~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (432)
                      +.  .+..            .+.|+.|++.++..++..++ .+..+|.|.... ++..++.      ..           
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~-~~~~~~~------~~-----------  235 (477)
T TIGR01301       174 YSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGS-DDFINSE------AA-----------  235 (477)
T ss_pred             HHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCcc-ccchhhh------cc-----------
Confidence            64  1111            14789999988777766665 667788753110 0000000      00           


Q ss_pred             HHHHhHHHHHHccCccchhHHHhhcc-----cchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHH-cCCCch------h
Q 013992          245 LKESVDKEIEEEGSSEKINLVKLLKT-----RTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQL-SGFASN------R  312 (432)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~  312 (432)
                               +.++.+.....++++++     +..|+.+++.++.++     ++..+..|.+.+..+ ..+.++      +
T Consensus       236 ---------~~~~~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~-----a~f~~~~y~T~~vg~~v~~~~~~~~~~y~  301 (477)
T TIGR01301       236 ---------PPSKHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWI-----AWFPFILFDTDWMGREVYGGSVNQGAKYD  301 (477)
T ss_pred             ---------cccccchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHH-----HHHHHHHhccHHHHHHHcCCCCcchhHHH
Confidence                     00000001112222222     233443333333333     666666666666653 322211      1


Q ss_pred             H----HHHHHHHHHHHHHHHHHHHHHHHhhhCC-chhhHhHHHHHHHHHHHHHHHH
Q 013992          313 T----ALLLSLVTSGLNAAGSIVSIYFIDRTGR-KKLLVISLSGVILSLGVLSAVF  363 (432)
Q Consensus       313 ~----~~~~~~~~~~~~~~~~~~~g~l~d~~~~-~~~~~~~~~~~~~~~~~~~~~~  363 (432)
                      +    ..+......+...+.+++..++.+|+|+ |+.+.++.++.++++....+..
T Consensus       302 ~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~  357 (477)
T TIGR01301       302 DGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVT  357 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHH
Confidence            1    2334444555556667778888999985 6777888888888777776554

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.77  E-value=9.1e-18  Score=162.00  Aligned_cols=181  Identities=14%  Similarity=0.159  Sum_probs=138.2

Q ss_pred             cchhhhhhh-hccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHH---HHHhCChhHH
Q 013992           50 ISGALLYIR-DDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVI---MAAAPNPGAL  125 (432)
Q Consensus        50 ~~~~~~~i~-~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~---~~~~~~~~~~  125 (432)
                      ....+|.+. +++|.+..+.   ++..+...++..++.++.|+++||+|||+++..+.++..++.+.   ...+++...+
T Consensus       269 ~~~~~p~~l~~~~g~s~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (490)
T PRK10642        269 LLTYMPSYLSHNLHYSEDHG---VLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLI  345 (490)
T ss_pred             HHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence            444556554 5678776665   66777888899999999999999999999988877654433322   2234567778


Q ss_pred             HHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHHHHHHHH
Q 013992          126 ITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFIL  205 (432)
Q Consensus       126 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~~~~~~~  205 (432)
                      ++++++.|++.+........++.|.+|++.|+.+++.......++..++|.+.+++.+..++|+..+++..+.+++..+.
T Consensus       346 ~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~  425 (490)
T PRK10642        346 FAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLIT  425 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Confidence            88899998877777777778889999999999999975444555567888888888775545888777777777777777


Q ss_pred             HhhcCCCHHHHHHc-----CCHHHHHHHHHHhC
Q 013992          206 MLLLPESPRWLYRK-----GREEEAQAILRKVY  233 (432)
Q Consensus       206 ~~~~~e~~~~~~~~-----~~~~~~~~~~~~~~  233 (432)
                      .+++||+|+|+.++     ++.||+.+.+++++
T Consensus       426 ~~~~pes~~~~~~~~~~~~~~~~~a~~~l~~~~  458 (490)
T PRK10642        426 GVTMKETANRPLKGATPAASDIQEAKEILVEHY  458 (490)
T ss_pred             HHHhccccCCCCCCccccccchhhHHHHhhccc
Confidence            77789999987754     88889888888876

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.75  E-value=5.3e-17  Score=150.57  Aligned_cols=326  Identities=16%  Similarity=0.077  Sum_probs=214.6

Q ss_pred             cccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhcccc-chHHHHHHHHHHHHHHHHHHHh
Q 013992           41 LLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFG-RRTSILVADFLFFVGAVIMAAA  119 (432)
Q Consensus        41 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G-rr~~l~~~~~~~~~~~~~~~~~  119 (432)
                      ++.....+...|.++...++.|.+..+.   |.+.++..+...++++++|.++||++ +||.+.+..++.++........
T Consensus        12 f~~f~~~G~~~p~~~~~L~~~G~s~~qI---G~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~   88 (400)
T PF03825_consen   12 FLYFFAYGAFLPYLPLYLESRGFSGTQI---GILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFS   88 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            3344445556777888888899988898   99999999999999999999999986 5677777777777777777888


Q ss_pred             CChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHH-HhhccCCCC--chHHHHHhhH
Q 013992          120 PNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLI-NLAFTRAPG--TWRWMLGVAG  196 (432)
Q Consensus       120 ~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i-~~~l~~~~~--~wr~~f~~~~  196 (432)
                      ++++.+++.-++..+...+..|..-++..+...+  +++-.|-.-...++|.+++... ...+....+  +....+++.+
T Consensus        89 ~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~--~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~  166 (400)
T PF03825_consen   89 SSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGD--RGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAA  166 (400)
T ss_pred             ccHHHHHHHHHHHHHHHccHHHHHHHHHHHHccc--ccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHH
Confidence            8999888888888888888888888888887753  3444455555566666655432 222222211  1334556666


Q ss_pred             HHHHHHHHHHhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhHHHhhcccchhHH
Q 013992          197 IPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRG  276 (432)
Q Consensus       197 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (432)
                      ...++.....+.+|+.|+    +++                              ++++.++....+..+++|+|++...
T Consensus       167 ~~~~ll~~~~l~lp~~~~----~~~------------------------------~~~~~~~~~~~~~~~llk~~~~~~F  212 (400)
T PF03825_consen  167 ILSLLLAGFALFLPKTPP----KRS------------------------------AKESVKKLLGLDALKLLKNPRFLVF  212 (400)
T ss_pred             HHHHHHHHHHHhCCCCcc----ccc------------------------------cCCCcccccchHHHHHhcCccHHHH
Confidence            555555555666788752    000                              0001111223345689999998765


Q ss_pred             HHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhhHhHHHHHHHHH
Q 013992          277 LIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSL  356 (432)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~  356 (432)
                      .+..++...     .......+.+.|+++.++.+....+.......+++++.-...+++.+|+|.|+++.++.+..++=.
T Consensus       213 ll~~~l~~~-----~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~  287 (400)
T PF03825_consen  213 LLAAFLIGI-----SHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRW  287 (400)
T ss_pred             HHHHHHHHH-----HHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            554444333     566677788999999986656667777777888999999999999999999999999888877766


Q ss_pred             HHHHHHHhccCCCCCccchhc----ccccccccccccccccccCccchhhhhccCCCCccccccc
Q 013992          357 GVLSAVFHETTSHSPMVSAVE----TSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASH  417 (432)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~g~~~~~  417 (432)
                      .+......  +.+......++    -+.......   .....-+...+|++.|++  ++|+-++.
T Consensus       288 ~l~a~~~~--~~~~~~~~~~l~q~lhG~tf~~~~---~a~~~yi~~~~p~~~~at--~Q~l~~~~  345 (400)
T PF03825_consen  288 LLYAYFSD--PWPFIVALQLLGQLLHGLTFGLFH---AASVRYIDRIAPPELRAT--AQGLYSAL  345 (400)
T ss_pred             HHHHHhcC--CcHHHHHHHHHHHhhhhHHHHHHH---HHHHHHHHHhCCccchHH--HHHHHHHH
Confidence            66555422  22211111111    121111111   111122233566699999  88887654

>PRK09669 putative symporter YagG; Provisional

Probab=99.74  E-value=2.6e-17  Score=156.99  Aligned_cols=259  Identities=15%  Similarity=0.083  Sum_probs=167.8

Q ss_pred             hhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhcc----ccch-HHHHHHHHHHHHHHHHHHHhCC-----
Q 013992           52 GALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDR----FGRR-TSILVADFLFFVGAVIMAAAPN-----  121 (432)
Q Consensus        52 ~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr----~Grr-~~l~~~~~~~~~~~~~~~~~~~-----  121 (432)
                      ...+++.+++|++....   |.+.++..+..++..|+.|.++||    +||| +.++.+.+..+++.++....++     
T Consensus        31 ~l~~~~t~~~gls~~~~---g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~  107 (444)
T PRK09669         31 FLAYFYTDVFGLSAAIM---GTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATG  107 (444)
T ss_pred             HHHHHHHHhcCCCHHHH---HHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcch
Confidence            35566778899998888   999999999999999999999998    7875 5555677777777766655543     


Q ss_pred             -hhHHHHHHhhhhccccchhhhHHHHHHhcC-CcccchhHHHHHHHHHHHHHHHHHHHHhhccCC------CCchHHHHH
Q 013992          122 -PGALITGRVFVGLGVGMASMTSPLYISEAS-PAKIRGALVSTNGFLITSGQFLSYLINLAFTRA------PGTWRWMLG  193 (432)
Q Consensus       122 -~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~------~~~wr~~f~  193 (432)
                       ...+.+...+.+.+......+..++.+|+. ++++|.+..++......+|..+++.+...+...      ..+|+..+.
T Consensus       108 ~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~  187 (444)
T PRK09669        108 KIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMM  187 (444)
T ss_pred             HHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHH
Confidence             344555666667666667777778999998 458899888888877777777766543322211      114888888


Q ss_pred             hhHHHHHHHHHH-HhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhHHHhhcccc
Q 013992          194 VAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRT  272 (432)
Q Consensus       194 ~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (432)
                      +.+++.++..+. ++..+|.++    +.                                 ++++.+.....++.+|||.
T Consensus       188 i~~ii~~v~~~~~~~~~~e~~~----~~---------------------------------~~~~~~~~~~~~~~~~n~~  230 (444)
T PRK09669        188 VMGLLGVVLFFCCFFMTKERYT----PE---------------------------------VDNSSSVWKDLKLLLGNSQ  230 (444)
T ss_pred             HHHHHHHHHHHHHhCCeEEecC----CC---------------------------------CcCCCCHHHHHHHHhCCch
Confidence            887776665554 344444311    00                                 0011122345677889998


Q ss_pred             hhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhhHhHHHHH
Q 013992          273 VRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGV  352 (432)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~  352 (432)
                      ++...+..++...     .........+.|.+...+. +...........+..+++.++.+++.||+|+|+.+..+....
T Consensus       231 ~~~l~~~~~~~~~-----~~~~~~~~~~y~~~~~~~~-~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~  304 (444)
T PRK09669        231 WRIMFIFNVVLLT-----AVVTRGGATLYYVNYVLLR-PDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAF  304 (444)
T ss_pred             HHHHHHHHHHHHH-----HHHHHhhhhheeeeeecCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence            8775544333222     1222222222333333222 334444555556777888899999999999999988876655


Q ss_pred             HHHH
Q 013992          353 ILSL  356 (432)
Q Consensus       353 ~~~~  356 (432)
                      .+..
T Consensus       305 ~~~~  308 (444)
T PRK09669        305 VILS  308 (444)
T ss_pred             HHHH
Confidence            5433

>TIGR00788 fbt folate/biopterin transporter

Probab=99.72  E-value=2.1e-17  Score=157.64  Aligned_cols=356  Identities=12%  Similarity=-0.012  Sum_probs=214.2

Q ss_pred             HHHHHhhcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhcccc-----chHHHHHHHHH
Q 013992           34 FSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFG-----RRTSILVADFL  108 (432)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G-----rr~~l~~~~~~  108 (432)
                      .++...++..++.........|.+.+++|.++.+.   +...+...+...+-. ++|+++||++     ||+.++++.++
T Consensus        29 ~~~~~~y~~qGl~~l~~~~~~~~l~~~lg~s~~~i---~~~~sl~~lpw~~K~-l~g~l~D~~~i~G~rRr~~l~~~~~l  104 (468)
T TIGR00788        29 AIGLQVLFVKGIAGLMRLPLSPMLTDDLGLDGARY---QRLVGLSSLGWALKP-FAGVMSDTFPLFGYTKRWYLVLSGLL  104 (468)
T ss_pred             HHHHHHHHHhhHHHHhhhhhhHHHHHhcCCCHHHH---HHHHHHHHHHHHHHH-HHHHHHHhcCCCCccchHHHHHHHHH
Confidence            34444556777774444455666777899999988   888999999998854 4999999998     78878888776


Q ss_pred             HH-HHHHHHHHhCChhHHH-HHHhhhhccccchhhhHHHHHHhcCCcccchhHHH---HHHHHHHHHHHHHHHHHhhccC
Q 013992          109 FF-VGAVIMAAAPNPGALI-TGRVFVGLGVGMASMTSPLYISEASPAKIRGALVS---TNGFLITSGQFLSYLINLAFTR  183 (432)
Q Consensus       109 ~~-~~~~~~~~~~~~~~~~-~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~---~~~~~~~~g~~i~~~i~~~l~~  183 (432)
                      .+ ++....+..++..... +..++.+++.+...+..-++..|..+ +++....+   .......+|..+++.+++.+.+
T Consensus       105 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~  183 (468)
T TIGR00788       105 GSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLD  183 (468)
T ss_pred             HHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence            63 4333334345544444 47889999999999999999999998 55544333   3333445899999999999988


Q ss_pred             CCCchHHHHHhhHHHHHHHHHHHhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchh
Q 013992          184 APGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKIN  263 (432)
Q Consensus       184 ~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (432)
                      ..+ ||..|++.+...++..+..++++|++.....+.+.++  ..       ..     .......    .+..++....
T Consensus       184 ~~~-~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~--~~-------~~-----~~~~~~~----~~~~~~~~~~  244 (468)
T TIGR00788       184 KTL-TRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYL--EM-------NM-----ALLTLGV----LANVKVQILG  244 (468)
T ss_pred             hcC-cchHHHHHHHHHHHHHHHHHhcccccccccccccccc--hh-------hh-----hhhhhhH----HHHHHHHHHH
Confidence            777 9999999888777776667778886310000000000  00       00     0000000    0000111223


Q ss_pred             HHHhhcccchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCch
Q 013992          264 LVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKK  343 (432)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~  343 (432)
                      .++.+++|..+...+..++...  ..... ....+.  +.++..+.++...+......+++.+++....+++.+|++.|+
T Consensus       245 l~~~l~~~~i~~~l~fifl~~~--~~~~~-~~~~f~--~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~  319 (468)
T TIGR00788       245 LRGAIQLLEIAKPLIFIFLSYA--NLPGA-SGSVFC--ATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRL  319 (468)
T ss_pred             HHHHHhcHHHHHHHHHHHHHHh--hcCCC-CceeEE--EEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHH
Confidence            4556777777664443322111  11111 101111  112234566888899988899999999999999999999999


Q ss_pred             hhHhHHHHHHHHHHHHHHHHhccC-------CCCCccchhcccccccccccccccccccCccchhhhhccCCCCcccccc
Q 013992          344 LLVISLSGVILSLGVLSAVFHETT-------SHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCAS  416 (432)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~g~~~~  416 (432)
                      .+.++.++..++............       .+......++.............   ......+|++.+++  ..|+.++
T Consensus       320 ~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~---~~~~~~~p~~~egt--~~al~~s  394 (468)
T TIGR00788       320 LFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFL---VLLARLCPSGCESS--VFALLAS  394 (468)
T ss_pred             HHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHH---HHHHHhCCCCceeh--HHHHHHH
Confidence            988888877776644322211111       11111111122222222222222   22233566699999  8888877


Q ss_pred             ccccccc
Q 013992          417 HSNKVKG  423 (432)
Q Consensus       417 ~~~~~~g  423 (432)
                      ..+.+..
T Consensus       395 ~~~lg~~  401 (468)
T TIGR00788       395 ILHLGSS  401 (468)
T ss_pred             HHHHHHH
Confidence            7665433

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.71  E-value=6.9e-16  Score=145.53  Aligned_cols=164  Identities=15%  Similarity=0.235  Sum_probs=126.9

Q ss_pred             hhcccceeccccchhhhh-hhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccc-cchHHHHHHHHHHHHHHHHH
Q 013992           39 GGLLFGYDTGVISGALLY-IRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRF-GRRTSILVADFLFFVGAVIM  116 (432)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~  116 (432)
                      ..+...+....+...+|. +.+++|.++.+.   +.+.+.+.....++.+++|+++||+ ||||+++.+.++..++.++.
T Consensus        17 ~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a---~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll   93 (493)
T PRK15462         17 LQIWEYFSFYGMRALLILYLTNQLKYDDNHA---YELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVL   93 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHH
Confidence            334444444444445554 566789988888   8899999999999999999999999 99999999999999998877


Q ss_pred             HHhC-ChhHHHHHHhhhhccccchhhhHHHHHHhcCCcc--cchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHH
Q 013992          117 AAAP-NPGALITGRVFVGLGVGMASMTSPLYISEASPAK--IRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLG  193 (432)
Q Consensus       117 ~~~~-~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~--~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~  193 (432)
                      +..+ +...+.++..+.+++.|...+...++++|.+|++  +|..++++.+...++|..++|.+.+++.+..+ ||+.|.
T Consensus        94 ~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~G-w~~~F~  172 (493)
T PRK15462         94 GASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYS-WAMGFG  172 (493)
T ss_pred             HHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhC-hHHHHH
Confidence            6543 2233444444555666766777788999999976  68999999999999999999999999988777 999999


Q ss_pred             hhHHHHHHHHHHH
Q 013992          194 VAGIPALLQFILM  206 (432)
Q Consensus       194 ~~~~~~~~~~~~~  206 (432)
                      +.++..++..+.+
T Consensus       173 iaaigm~l~li~~  185 (493)
T PRK15462        173 LAAVGMIAGLVIF  185 (493)
T ss_pred             HHHHHHHHHHHHH
Confidence            8776444444443

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.71  E-value=6.4e-17  Score=155.35  Aligned_cols=275  Identities=14%  Similarity=0.088  Sum_probs=171.5

Q ss_pred             ceeccccch-hhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhc----cccc-hHHHHHHHHHHHHHHHHHH
Q 013992           44 GYDTGVISG-ALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMND----RFGR-RTSILVADFLFFVGAVIMA  117 (432)
Q Consensus        44 ~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d----r~Gr-r~~l~~~~~~~~~~~~~~~  117 (432)
                      .+......+ ...++.+.+|++....   |.+..+..+..++..|+.|.++|    |+|| |+.++.+.+..+++.++..
T Consensus        19 ~~~~~~~~~~l~~yyt~v~Gls~~~v---g~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf   95 (473)
T PRK10429         19 DFAIGIVYMYLMYYYTDVVGLSVGLV---GTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLF   95 (473)
T ss_pred             hHHHHHHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHH
Confidence            333333444 3445666779988777   99999999999999999999999    6698 5566668777777766664


Q ss_pred             HhCC------hhHHHHHHhhhhccccchhhhHHHHHHhcC-CcccchhHHHHHHHHHHHHHHHHHHHHhhc----cC--C
Q 013992          118 AAPN------PGALITGRVFVGLGVGMASMTSPLYISEAS-PAKIRGALVSTNGFLITSGQFLSYLINLAF----TR--A  184 (432)
Q Consensus       118 ~~~~------~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l----~~--~  184 (432)
                      ..++      +..+.+..++.+++......+..++..|.. ++++|.+..++...+..+|..+.+.+...+    ..  .
T Consensus        96 ~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~  175 (473)
T PRK10429         96 SAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDR  175 (473)
T ss_pred             cCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCch
Confidence            4332      234455566777788878888889999999 589999998886666666655544433322    11  1


Q ss_pred             CCchHHHHHhhHHHHHHHHHH-HhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchh
Q 013992          185 PGTWRWMLGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKIN  263 (432)
Q Consensus       185 ~~~wr~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (432)
                      ..+|+....+.++..++..+. ++..+|.++.    .+.                            +.+++++.+.+..
T Consensus       176 ~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~----~~~----------------------------~~~~~~~~~~~~~  223 (473)
T PRK10429        176 GFGFQMFTLVLIAFFIVSTIITLRNVHEVYSS----DNQ----------------------------VSAEGSHLTLKDI  223 (473)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHcCceecCCc----ccc----------------------------ccccccCCCHHHH
Confidence            113777777777665554444 4445664210    000                            0000011112233


Q ss_pred             HHHhhcccchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCch
Q 013992          264 LVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKK  343 (432)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~  343 (432)
                      .+.+++||.++..+...++...     .......+.+.|.+...+. ....+.......+..+++.++.+++.||+|+|+
T Consensus       224 ~~~~~~n~~~~~ll~~~~~~~~-----~~~~~~~~~~y~~~y~~~~-~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~  297 (473)
T PRK10429        224 VALIYKNDQLSCLLGMALAYNI-----ASNIINGFAIYYFTYVIGD-ADLFPYYLSYAGAANLVTLILFPRLVKSLSRRI  297 (473)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHH-----HHHHHhhheeeEEEEECCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence            4456678777654444333322     3333334444454444443 444555656666788999999999999999999


Q ss_pred             hhHhHHHHHHHHHHHH
Q 013992          344 LLVISLSGVILSLGVL  359 (432)
Q Consensus       344 ~~~~~~~~~~~~~~~~  359 (432)
                      .+..+..+..++.+.+
T Consensus       298 ~~~~~~~~~~~~~~~~  313 (473)
T PRK10429        298 LWAGASIFPVLSCGVL  313 (473)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9888777666555444

>PRK09848 glucuronide transporter; Provisional

Probab=99.67  E-value=1.4e-15  Score=145.47  Aligned_cols=263  Identities=13%  Similarity=0.070  Sum_probs=161.1

Q ss_pred             hhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccc----cchHHH-HHHHHHHHHHHHHHHHhC-----C-
Q 013992           53 ALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRF----GRRTSI-LVADFLFFVGAVIMAAAP-----N-  121 (432)
Q Consensus        53 ~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~----Grr~~l-~~~~~~~~~~~~~~~~~~-----~-  121 (432)
                      ..+++.+.+|++..+.   |.+.+...+..++..++.|+++||.    ||||.. +.+.+...+..++....+     + 
T Consensus        31 l~~y~~~~~gl~~~~~---g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (448)
T PRK09848         31 LLSYYTDVAGVGAAAA---GTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSS  107 (448)
T ss_pred             HHHHHHHHcCCCHHHH---HHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcch
Confidence            3456777789988887   9999999999999999999999996    777755 555555554444432111     1 


Q ss_pred             -hhHHHHHHhhhhccccchhhhHHHHHHhcCCc-ccchhHHHHHHHH-----HHHHHHHHHHHHhhccCCCC-chHHHHH
Q 013992          122 -PGALITGRVFVGLGVGMASMTSPLYISEASPA-KIRGALVSTNGFL-----ITSGQFLSYLINLAFTRAPG-TWRWMLG  193 (432)
Q Consensus       122 -~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~-~~R~~~~~~~~~~-----~~~g~~i~~~i~~~l~~~~~-~wr~~f~  193 (432)
                       ...+.+...+.+++.+...+...++..|..++ ++|.+..+.-..+     ..++..++|.+.+....... .|.....
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~  187 (448)
T PRK09848        108 KVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTI  187 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHH
Confidence             12234445667777877777777777776654 6788876665543     33455566666654321111 1222222


Q ss_pred             hhHHHHHHHHHH-HhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhHHHhhcccc
Q 013992          194 VAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRT  272 (432)
Q Consensus       194 ~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (432)
                      +.++..++..+. ....||+++    +                                  ++++...+..+++++|||.
T Consensus       188 ~~~v~~~~~~~~~~~~~~e~~~----~----------------------------------~~~~~~~~~~~~~l~~n~~  229 (448)
T PRK09848        188 VLAIAGMVLYFICFKSTRENVV----R----------------------------------IVAQPSLKISLQTLKRNRP  229 (448)
T ss_pred             HHHHHHHHHHHHHHcCcEeccC----C----------------------------------CccCCCHHHHHHHHhCCch
Confidence            223333222222 333444421    0                                  0001112234567889999


Q ss_pred             hhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhhHhHHHHH
Q 013992          273 VRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGV  352 (432)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~  352 (432)
                      ++...+..++...     .+.......|.|+++..+.++...++......++.+++.++.+++.||+++|+.+.++..+.
T Consensus       230 f~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~  304 (448)
T PRK09848        230 LFMLCIGALCVLI-----STFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLG  304 (448)
T ss_pred             HHHHHHHHHHHHH-----HHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            8765554433332     34445555677777666665555555555556667889999999999999999999988877


Q ss_pred             HHHHHHHHH
Q 013992          353 ILSLGVLSA  361 (432)
Q Consensus       353 ~~~~~~~~~  361 (432)
                      .++...+.+
T Consensus       305 ~i~~~~~~~  313 (448)
T PRK09848        305 TCGYLLFFW  313 (448)
T ss_pred             HHHHHHHHH
Confidence            777655543

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.65  E-value=1.1e-15  Score=121.42  Aligned_cols=135  Identities=30%  Similarity=0.480  Sum_probs=120.9

Q ss_pred             HHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhhccccchhhhHHHHHHhcCCccc
Q 013992           76 SMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKI  155 (432)
Q Consensus        76 s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~  155 (432)
                      +.+.++..++.++.|++.||+|||+.+..+..+..++.+.....++++.+.+.+++.|++.+...+....++.|.+|+++
T Consensus         5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   84 (141)
T TIGR00880         5 AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEE   84 (141)
T ss_pred             EeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhh
Confidence            44567788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHHHHHHHH-HhhcCC
Q 013992          156 RGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFIL-MLLLPE  211 (432)
Q Consensus       156 R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e  211 (432)
                      |++..++.+....+|..+++.+.+.+.+..+ |++.+++.+...++..+. +++.||
T Consensus        85 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        85 RGVALGLMSAGIALGPLLGPPLGGVLAQFLG-WRAPFLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             hhHHHHHHHHhHHHHHHHhHHhHHHHhcccc-hHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            9999999999999999999999999988776 999999988777766655 444454

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.64  E-value=3.7e-14  Score=130.85  Aligned_cols=184  Identities=17%  Similarity=0.231  Sum_probs=140.8

Q ss_pred             hhHHHHHHHHHHhhcccceeccccchhhhhhhhccc--cchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccc-hHHHH
Q 013992           27 PYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFK--SVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGR-RTSIL  103 (432)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Gr-r~~l~  103 (432)
                      +..|+.+.+..+..++.....+++.+..-+..++++  .+.+..   |++.++..++.+++++.+|....|.+. |+.++
T Consensus        30 ~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ff---G~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli  106 (488)
T KOG2325|consen   30 KTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFF---GLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLI  106 (488)
T ss_pred             CCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchh---hHHHHHHHHHHHhcchhhcccccccCCcccCHH
Confidence            445666666666777777777766666555556644  444445   999999999999999999999999996 88899


Q ss_pred             HHHHHHHHHHHHH-HH---hC-ChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHH
Q 013992          104 VADFLFFVGAVIM-AA---AP-NPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLIN  178 (432)
Q Consensus       104 ~~~~~~~~~~~~~-~~---~~-~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~  178 (432)
                      .|.++..+++++. +.   .+ ..+.++++|++.|+|.+ ......+|+++....++|.++++....+..+|.++||.++
T Consensus       107 ~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~-n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q  185 (488)
T KOG2325|consen  107 VSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVG-NFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQ  185 (488)
T ss_pred             HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcc-cHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHH
Confidence            9999999999988 33   23 57889999999999988 4566779999999999999999999999999999999888


Q ss_pred             hhccCCC--C----------chHHHHHhhHHHHHHHHHH-HhhcCCCHH
Q 013992          179 LAFTRAP--G----------TWRWMLGVAGIPALLQFIL-MLLLPESPR  214 (432)
Q Consensus       179 ~~l~~~~--~----------~wr~~f~~~~~~~~~~~~~-~~~~~e~~~  214 (432)
                      ..+....  |          .+...-|+.++..++..+. .+++.|.++
T Consensus       186 ~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~  234 (488)
T KOG2325|consen  186 LAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYR  234 (488)
T ss_pred             HHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeeccc
Confidence            7765432  1          1233556666666666655 666777643

>TIGR01272 gluP glucose/galactose transporter

Probab=99.64  E-value=6.6e-15  Score=132.80  Aligned_cols=201  Identities=9%  Similarity=0.024  Sum_probs=147.1

Q ss_pred             HHhCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCC-----------
Q 013992          117 AAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAP-----------  185 (432)
Q Consensus       117 ~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~-----------  185 (432)
                      +...++..++++-++.|.|.+...+....++++..|+|++++.+++.+..+.+|..++|.+++.+....           
T Consensus         5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~   84 (310)
T TIGR01272         5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA   84 (310)
T ss_pred             HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence            456789999999999999999999999999999999999999999999999999999999999877321           


Q ss_pred             ----CchHHHHHhhHHHHHHHHHHHhhc--CCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCc
Q 013992          186 ----GTWRWMLGVAGIPALLQFILMLLL--PESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSS  259 (432)
Q Consensus       186 ----~~wr~~f~~~~~~~~~~~~~~~~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (432)
                          .+||+.|++.+...++..+.+.+.  ||.++      ++++                             +..++ 
T Consensus        85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~------~~~~-----------------------------~~~~~-  128 (310)
T TIGR01272        85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE------ADVA-----------------------------RVSSG-  128 (310)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc------cccc-----------------------------ccccc-
Confidence                249999997776655555554444  44311      0000                             00000 


Q ss_pred             cchhHHHhhcccchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHc--CCCchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013992          260 EKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLS--GFASNRTALLLSLVTSGLNAAGSIVSIYFID  337 (432)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d  337 (432)
                      +....++.+++|.++.     ..+.++++.........|.+.|+.+.  .+.++.+.+........+.++|+++.+++.|
T Consensus       129 ~~~~~~~~~~~~~~~l-----~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~  203 (310)
T TIGR01272       129 DTTQKTSAFQFTHLVL-----GALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMP  203 (310)
T ss_pred             cccchhhHHhhHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0011123455555544     22344444446778888999999754  4666888888999999999999999999999


Q ss_pred             hhCCchhhHhHHHHHHHHHHH
Q 013992          338 RTGRKKLLVISLSGVILSLGV  358 (432)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~  358 (432)
                      |+++|+.+.++..+..++..+
T Consensus       204 r~g~~~~l~~~~~l~~~~~~l  224 (310)
T TIGR01272       204 MISQGRYLAFNAFLAVLLSIG  224 (310)
T ss_pred             HhCHHHHHHHHHHHHHHHHHH
Confidence            999999888777666665533

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.63  E-value=3.9e-17  Score=156.46  Aligned_cols=306  Identities=18%  Similarity=0.187  Sum_probs=3.0

Q ss_pred             HHHHHhhcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHH
Q 013992           34 FSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGA  113 (432)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~  113 (432)
                      ..+++..+.+....+.....+..+.+.|+++..+.   |++.+.+-++..+..++..++.+|..|-|.+-+|.+++++++
T Consensus         6 ~~~~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~---G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~   82 (539)
T PF03137_consen    6 VFLCLLGLFQMMVSGYVNSSLTTIERRFGLSSSQS---GLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGS   82 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHH
Confidence            44555556667777788889999999999999999   999999999999999999999999888889999999999999


Q ss_pred             HHHHHhC--------------------------------------------------ChhHHHHHHhhhhccccchhhhH
Q 013992          114 VIMAAAP--------------------------------------------------NPGALITGRVFVGLGVGMASMTS  143 (432)
Q Consensus       114 ~~~~~~~--------------------------------------------------~~~~~~~~r~l~G~~~~~~~~~~  143 (432)
                      +++++-+                                                  -+..++++.++.|+|....++..
T Consensus        83 ~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG  162 (539)
T PF03137_consen   83 LLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLG  162 (539)
T ss_dssp             ---------------------------------------------------------------------SSS--------
T ss_pred             HHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccce
Confidence            8876300                                                  13557889999999999999999


Q ss_pred             HHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCC---------------------CchHHHHHhhHHHHHHH
Q 013992          144 PLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAP---------------------GTWRWMLGVAGIPALLQ  202 (432)
Q Consensus       144 ~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~---------------------~~wr~~f~~~~~~~~~~  202 (432)
                      .+|+-|..++++-+..+|+......+|.++|.++++.+.+..                     |.|-.-|++.+...++.
T Consensus       163 ~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~  242 (539)
T PF03137_consen  163 ITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLS  242 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998776531                     12444566677767777


Q ss_pred             HHHHhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHH-hHHHHHHccCccchhHHHhhcccchhHHHHHHH
Q 013992          203 FILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKES-VDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGV  281 (432)
Q Consensus       203 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (432)
                      .+.++++|+.-+-..  +..++.+...++....     ..+...+. ..+...+..+.-+...+++++||.+....+.. 
T Consensus       243 aipl~~FPk~lp~~~--~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~-  314 (539)
T PF03137_consen  243 AIPLFFFPKKLPGTS--ERQEEKESSERKEEDS-----DKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAG-  314 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHcCCccCCCcc--cccchhhhhhcchhhh-----hhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHH-
Confidence            777777776632110  0000000000000000     00000000 00000112233455677888888875544433 


Q ss_pred             HHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHH-HHHHHHHHHHHHHHhhhCC--chhhHhHHHHHHH
Q 013992          282 GLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTS-GLNAAGSIVSIYFIDRTGR--KKLLVISLSGVIL  354 (432)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~~~--~~~~~~~~~~~~~  354 (432)
                          ........++..|.|.|++.+.+.++..+.++..... .+.++|.+++|++.+|++-  |+....+.+...+
T Consensus       315 ----~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v  386 (539)
T PF03137_consen  315 ----VFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIV  386 (539)
T ss_dssp             ----------------------------------------------------------------------------
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHH
Confidence                3344467888899999999988777776666654333 3668999999999999753  4444444333333

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.61  E-value=6.4e-15  Score=141.33  Aligned_cols=305  Identities=15%  Similarity=0.180  Sum_probs=219.4

Q ss_pred             HHHHHHHHhhcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHH
Q 013992           31 RLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFF  110 (432)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~  110 (432)
                      ..+.++++..+.+++....+...+..+.+.|+++..+.   |++.+.+-++..+...+..+...|.-|-+.+-+|.++++
T Consensus        97 ~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~s---G~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~  173 (735)
T KOG3626|consen   97 MFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQS---GLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMG  173 (735)
T ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcc---eeEeeecccchhhhhHhHHHhccccCccceeeechhHHH
Confidence            34556666777777777888888999999999999888   999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHh--------------------C-----------------------------C--h-hHHHHHHhhhhccccc
Q 013992          111 VGAVIMAAA--------------------P-----------------------------N--P-GALITGRVFVGLGVGM  138 (432)
Q Consensus       111 ~~~~~~~~~--------------------~-----------------------------~--~-~~~~~~r~l~G~~~~~  138 (432)
                      ++++++++-                    +                             +  + ..++++.++.|+|...
T Consensus       174 lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tp  253 (735)
T KOG3626|consen  174 LGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATP  253 (735)
T ss_pred             HHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCC
Confidence            999998741                    0                             0  2 2567788999999999


Q ss_pred             hhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCC------------------CchHHHHHhhHHHHH
Q 013992          139 ASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAP------------------GTWRWMLGVAGIPAL  200 (432)
Q Consensus       139 ~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~------------------~~wr~~f~~~~~~~~  200 (432)
                      .++...+|+-|...+++-+..+|+......+|.++|.++++++....                  |.|..-|++.+.+.+
T Consensus       254 i~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~  333 (735)
T KOG3626|consen  254 IFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLL  333 (735)
T ss_pred             CccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999876531                  136667888888888


Q ss_pred             HHHHHHhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhHHHhhcccchhHHHHHH
Q 013992          201 LQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAG  280 (432)
Q Consensus       201 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (432)
                      +..+.++++|+..+.   ..++.+..+ .+.....++        ....+....++-++-+...+++++||.+...++..
T Consensus       334 ~~a~p~f~fPk~lp~---~~~~~~~~~-~~~~k~~~~--------~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~  401 (735)
T KOG3626|consen  334 FSAVPLFFFPKELPK---SQKRKRARD-LHVLKTESG--------GAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLAS  401 (735)
T ss_pred             HHHHHHHhCcccCcc---ccccchhhh-hcccccccc--------cccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHH
Confidence            888888888876321   111000000 000000000        00000000011123355678889998876544443


Q ss_pred             HHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHH-HHHHHHHHHHHHHHHHHHhhhCC--chhhHhHHHHHHHH
Q 013992          281 VGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLS-LVTSGLNAAGSIVSIYFIDRTGR--KKLLVISLSGVILS  355 (432)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~l~d~~~~--~~~~~~~~~~~~~~  355 (432)
                           .+....+.+...|+|.|++.+.+.++..+..+. .+...+..+|.+++|++.+|+..  |.......+...+.
T Consensus       402 -----~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~  474 (735)
T KOG3626|consen  402 -----VIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLS  474 (735)
T ss_pred             -----HHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHH
Confidence                 334447788899999999999888888877777 34444568889999999998754  44444433333333

>PRK11462 putative transporter; Provisional

Probab=99.61  E-value=1.8e-13  Score=130.59  Aligned_cols=255  Identities=13%  Similarity=0.037  Sum_probs=163.3

Q ss_pred             hhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhcc----ccchHHHH-HHHHHHHHHHHHHHHhCC------
Q 013992           53 ALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDR----FGRRTSIL-VADFLFFVGAVIMAAAPN------  121 (432)
Q Consensus        53 ~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr----~Grr~~l~-~~~~~~~~~~~~~~~~~~------  121 (432)
                      ...++.+..|++....   |.+..+.-+--++.-|+.|.++||    +||||..+ ++.+..+++.+++...++      
T Consensus        32 l~~fyt~~~Gl~~~~~---g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~  108 (460)
T PRK11462         32 MMFFYTDIFGIPAGFV---GTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGK  108 (460)
T ss_pred             HHHHHHHhhCCCHHHH---HHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchH
Confidence            4455667788888887   999999999999999999999995    79876554 576788887776655543      


Q ss_pred             hhHHHHHHhhhhccccchhhhHHHHHHhcCC-cccchhHHHHHHHHHHHHHHHHHHHHhhccCCC------CchHHHHHh
Q 013992          122 PGALITGRVFVGLGVGMASMTSPLYISEASP-AKIRGALVSTNGFLITSGQFLSYLINLAFTRAP------GTWRWMLGV  194 (432)
Q Consensus       122 ~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~------~~wr~~f~~  194 (432)
                      ...+.+..++..++......+-.++.+|..+ ++||++..++...+..+|..+++.+...+....      .+|+....+
T Consensus       109 ~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i  188 (460)
T PRK11462        109 MIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAV  188 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHH
Confidence            3345556666788888888888889999988 788999999999998888877766644332221      137777777


Q ss_pred             hHHHHHHHHHH-HhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhHHHhhcccch
Q 013992          195 AGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTV  273 (432)
Q Consensus       195 ~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (432)
                      .+++.++...+ +...+|.++    +                                  ++++.+.+...+..++||.+
T Consensus       189 ~~ii~~i~~~i~~~~~kE~~~----~----------------------------------~~~~~~~~~~l~~~~~Nk~~  230 (460)
T PRK11462        189 LSVVAFMMLAFCFFTTKERVE----A----------------------------------PPTTTSMREDLRDIWQNDQW  230 (460)
T ss_pred             HHHHHHHHHHHHHhcceeccC----C----------------------------------CccCCCHHHHHHHHhCChHH
Confidence            77665555544 333444321    0                                  00011122345667778777


Q ss_pred             hHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhhHhHHHHHH
Q 013992          274 RRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVI  353 (432)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~  353 (432)
                      +......++...     ...........|.+...+. +...+.......+..+++.++++++.||+++|+....+..+..
T Consensus       231 ~~l~~~~~~~~~-----~~~~~~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~  304 (460)
T PRK11462        231 RIVGLLTIFNIL-----AVCVRGGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLA  304 (460)
T ss_pred             HHHHHHHHHHHH-----HHHHHHhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence            654333222211     2122222222233333333 3334455566677888999999999999999888765444333


Q ss_pred             H
Q 013992          354 L  354 (432)
Q Consensus       354 ~  354 (432)
                      +
T Consensus       305 ~  305 (460)
T PRK11462        305 V  305 (460)
T ss_pred             H
Confidence            3

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.61  E-value=2.3e-13  Score=128.87  Aligned_cols=252  Identities=19%  Similarity=0.162  Sum_probs=171.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHH-HHHHHHHHHHHHHh-C-ChhHHHHHHhhhhccccchhhhHHHH
Q 013992           70 LQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVA-DFLFFVGAVIMAAA-P-NPGALITGRVFVGLGVGMASMTSPLY  146 (432)
Q Consensus        70 ~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~-~~~~~~~~~~~~~~-~-~~~~~~~~r~l~G~~~~~~~~~~~~~  146 (432)
                      ..++..++..+..++..|+.|.++|+-|+||.++.. ..+..+++.+..+. + +++...+..++.-++.+.......++
T Consensus        71 ~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~  150 (477)
T PF11700_consen   71 LWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAY  150 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            336788888888999999999999999977766554 44444556655553 3 34444445555556777778888899


Q ss_pred             HHhcCCcccc--------------------------hhHHHHHHHHHHHHHHHHHHHHhhccCCCC-------chHHHHH
Q 013992          147 ISEASPAKIR--------------------------GALVSTNGFLITSGQFLSYLINLAFTRAPG-------TWRWMLG  193 (432)
Q Consensus       147 i~~~~~~~~R--------------------------~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~-------~wr~~f~  193 (432)
                      +.|..+++++                          ++..+.-.....+|..+...+.-.+....+       +-|..+.
T Consensus       151 LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~  230 (477)
T PF11700_consen  151 LPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFL  230 (477)
T ss_pred             hHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHH
Confidence            9999999888                          899998888888888877766655433222       2488888


Q ss_pred             hhHHHHHHHHHH-HhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhHHHhhcccc
Q 013992          194 VAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRT  272 (432)
Q Consensus       194 ~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (432)
                      +.++.-++..+. .+++||.|+....++.........                            ++-....++.-|.|+
T Consensus       231 ~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~----------------------------~~l~~t~k~~~~~~~  282 (477)
T PF11700_consen  231 IVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGF----------------------------KRLWRTFKEIRKLRQ  282 (477)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHH----------------------------HHHHHHHHHHHhChH
Confidence            888766555444 777888754100000000000000                            001123344444454


Q ss_pred             hhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCc--hhhHhHHH
Q 013992          273 VRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRK--KLLVISLS  350 (432)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~--~~~~~~~~  350 (432)
                      ..+     +++..+....+..++......|.++..+.+..+.....+...+.+++|.++.|++.||+|.|  +++.++..
T Consensus       283 ~~~-----fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~  357 (477)
T PF11700_consen  283 LFL-----FLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLI  357 (477)
T ss_pred             HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence            443     34445555568888888999999877777788888888999999999999999999999998  77776665


Q ss_pred             HHHH
Q 013992          351 GVIL  354 (432)
Q Consensus       351 ~~~~  354 (432)
                      +..+
T Consensus       358 ~~~~  361 (477)
T PF11700_consen  358 LWII  361 (477)
T ss_pred             HHHH
Confidence            5533

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.60  E-value=1.4e-14  Score=143.22  Aligned_cols=140  Identities=16%  Similarity=0.105  Sum_probs=122.6

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhhccccchhhhHHHHHHhcC
Q 013992           72 ESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEAS  151 (432)
Q Consensus        72 ~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~  151 (432)
                      .+...+..++..++.++.|+++||+|||++++.+.++.+++.++.++.++...+++.+++.|++.+..++...++++|++
T Consensus       598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~  677 (742)
T TIGR01299       598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELY  677 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            34455666888999999999999999999999999999999999999999888888899999888888899999999999


Q ss_pred             CcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHHHHHHHHHhhcCCCH
Q 013992          152 PAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLLLPESP  213 (432)
Q Consensus       152 ~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~  213 (432)
                      |+++|++++|+......+|.+++|.+++.+.+.  +....|++.++..++..++.+++||+.
T Consensus       678 Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~--~~~~pf~i~a~~lll~~ll~~~LPET~  737 (742)
T TIGR01299       678 PSDKRATAFGFLNALCKAAAVLGILIFGSFVGI--TKAAPILFASAALACGGLLALKLPDTR  737 (742)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            999999999999999999999999999987765  356777777777777777777789873

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00889 2A0110 nucleoside transporter

Probab=99.60  E-value=3.4e-15  Score=140.93  Aligned_cols=161  Identities=13%  Similarity=0.114  Sum_probs=129.1

Q ss_pred             hhhhhhhhccccchhh-----hHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHhC----Ch
Q 013992           52 GALLYIRDDFKSVDRK-----TLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAP----NP  122 (432)
Q Consensus        52 ~~~~~i~~~~~~~~~~-----~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~----~~  122 (432)
                      ...|...++.+.+...     ....+...++..++..++.++.|+++||+|||+++..+.++.+++..+.....    ++
T Consensus       229 ~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~  308 (418)
T TIGR00889       229 IFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGY  308 (418)
T ss_pred             HhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence            3345445555543311     12338888999999999999999999999999999999999988877766642    24


Q ss_pred             hHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHH-HHHHHHHHHHHHHHhhccCCCC-----chHHHHHhhH
Q 013992          123 GALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNG-FLITSGQFLSYLINLAFTRAPG-----TWRWMLGVAG  196 (432)
Q Consensus       123 ~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~-~~~~~g~~i~~~i~~~l~~~~~-----~wr~~f~~~~  196 (432)
                      +.+++.+++.|++.+...+....++.|++|+++|++++++.+ ....+|..+||.+++++.+..+     +|+..|.+.+
T Consensus       309 ~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~  388 (418)
T TIGR00889       309 ALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFA  388 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHH
Confidence            567778999999999888888899999999999999999997 6788999999999999988642     3999999888


Q ss_pred             HHHHHHHHH-HhhcCCC
Q 013992          197 IPALLQFIL-MLLLPES  212 (432)
Q Consensus       197 ~~~~~~~~~-~~~~~e~  212 (432)
                      +..++..++ +++++|+
T Consensus       389 ~~~~i~~~l~~~~~~~~  405 (418)
T TIGR00889       389 GYIAILAVLFMIFFKYS  405 (418)
T ss_pred             HHHHHHHHHHHHHhCCc
Confidence            777666655 6667776

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.59  E-value=4.8e-14  Score=132.43  Aligned_cols=155  Identities=14%  Similarity=0.160  Sum_probs=127.3

Q ss_pred             hhhh-hhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHhCChhHHHHHHh
Q 013992           52 GALL-YIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRV  130 (432)
Q Consensus        52 ~~~~-~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~  130 (432)
                      ...| ++.+++|.+..+.   +++.+...++..++.++.|+++||+|||+.+..+.....+........++.+.+++.++
T Consensus       237 ~~~p~~l~~~~~~~~~~~---g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  313 (393)
T PRK15011        237 INMPLFIINELHLPEKLA---GVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQL  313 (393)
T ss_pred             HHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            3445 4556788887777   77777777778889999999999999999888777666655555556778888888999


Q ss_pred             hhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHHHHHHHHHhhcC
Q 013992          131 FVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLLLP  210 (432)
Q Consensus       131 l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~  210 (432)
                      +.+++.+...+....+..|.+|+ +|+++.++++....+|..+++.+++.+.+..+ |+..|++.+++.++..+..++.|
T Consensus       314 l~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g-~~~~~~~~~~~~~~~~~~~~~~~  391 (393)
T PRK15011        314 LNAIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWN-YHAVFWFALVMIIATLFCLLRIK  391 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHhhc
Confidence            88888887777777888999986 49999999999999999999999999999776 99999998888888777777776


Q ss_pred             C
Q 013992          211 E  211 (432)
Q Consensus       211 e  211 (432)
                      |
T Consensus       392 ~  392 (393)
T PRK15011        392 D  392 (393)
T ss_pred             C
Confidence            5

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.59  E-value=1.5e-14  Score=136.63  Aligned_cols=158  Identities=16%  Similarity=0.085  Sum_probs=132.8

Q ss_pred             chhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHhCChhHHHHHHh
Q 013992           51 SGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRV  130 (432)
Q Consensus        51 ~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~  130 (432)
                      ....|.+.++.|.+..+.   +.+.+...++..++.++.|+++||+|||+.+..+.+...++.++..+.++.+.+.+..+
T Consensus       240 ~~~~p~~~~~~g~s~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (406)
T PRK11551        240 LNWLPSLLVGQGLSRSQA---GLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGF  316 (406)
T ss_pred             HHHHHHHHHhCCCChhhh---hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            344677777888888777   88999999999999999999999999999998887777777777777888888888888


Q ss_pred             hhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHHHHHHHHHhhcC
Q 013992          131 FVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLLLP  210 (432)
Q Consensus       131 l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~  210 (432)
                      +.|++.+...+...++..|.+|+++|++..++.+....+|..++|.+.+.+.+..++|...++......++..+..+++.
T Consensus       317 ~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (406)
T PRK11551        317 AAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLLV  396 (406)
T ss_pred             HHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence            88988877888888999999999999999999999999999999999999998766577777777766666655544443


Q ss_pred             C
Q 013992          211 E  211 (432)
Q Consensus       211 e  211 (432)
                      +
T Consensus       397 ~  397 (406)
T PRK11551        397 S  397 (406)
T ss_pred             c
Confidence            3

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.58  E-value=8.7e-15  Score=138.82  Aligned_cols=140  Identities=14%  Similarity=0.126  Sum_probs=122.0

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhhccccchhhhHHHHHHhcC
Q 013992           72 ESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEAS  151 (432)
Q Consensus        72 ~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~  151 (432)
                      +.+.++..++..++.++.|++.||+|||+.+..+.++.+++.++.++++|.+.+++.+++.|++.+...+....++.|.+
T Consensus       265 g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~  344 (420)
T PRK09528        265 GYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNF  344 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            88999999999999999999999999999999999999999889999999999999999999988887788888999999


Q ss_pred             CcccchhHHHH-HHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHHHHHHHH-HhhcCCC
Q 013992          152 PAKIRGALVST-NGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFIL-MLLLPES  212 (432)
Q Consensus       152 ~~~~R~~~~~~-~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~  212 (432)
                      |++.|+...+. ++....+|..+++.+.+++.+..+ ||..|...++..++..++ ++.++++
T Consensus       345 ~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G-~~~~f~~~~~~~~i~~~~~~~~~~~~  406 (420)
T PRK09528        345 DVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIG-FQGTYLILGGIVLLFTLISVFTLSGD  406 (420)
T ss_pred             CccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            99999887655 567788999999999999999887 999999988777665555 4445444

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.57  E-value=1.8e-13  Score=124.81  Aligned_cols=276  Identities=17%  Similarity=0.138  Sum_probs=170.9

Q ss_pred             eeccccchhhhhhhh-ccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHH--HHHH-HHHH--
Q 013992           45 YDTGVISGALLYIRD-DFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFF--VGAV-IMAA--  118 (432)
Q Consensus        45 ~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~--~~~~-~~~~--  118 (432)
                      +..+...+..|...+ +-|++..+.   |.+.++..+...+.+|+.|.++||+|.||-++....+..  .+.+ ...+  
T Consensus        21 f~~gi~~pF~~iWL~~~~GLs~~~i---G~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~p   97 (412)
T PF01306_consen   21 FIWGIFLPFFPIWLTQVAGLSGTEI---GIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGP   97 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHH---HHHH---HHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHH
T ss_pred             HHHHHHHHHHHHHHccccCCCHHHH---HHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334555566665554 589999999   999999999999999999999999997765554433222  2222 2122  


Q ss_pred             --hCChh-HHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhh
Q 013992          119 --APNPG-ALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVA  195 (432)
Q Consensus       119 --~~~~~-~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~  195 (432)
                        ..|.+ ..+++-...|+......|..-+++.++.  ++.+.-.|-.-...++|.+++..++|.+.+.  +-+..|++.
T Consensus        98 ll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i--~p~~~fwi~  173 (412)
T PF01306_consen   98 LLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNI--NPNIIFWIA  173 (412)
T ss_dssp             HHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeee--CccHHHHHH
Confidence              23433 3445555667666666777777766654  2235556667778889999999999988865  456778876


Q ss_pred             HHHHHHHHHHHhhc-CCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhHHHhhcccchh
Q 013992          196 GIPALLQFILMLLL-PESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVR  274 (432)
Q Consensus       196 ~~~~~~~~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (432)
                      ....++..++.++. |+.++.....+                              .+..++++.+.++..+++|+|++|
T Consensus       174 s~~~~il~lll~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~l~k~~~fw  223 (412)
T PF01306_consen  174 SAAAIILLLLLLLLKPDVPPQAEVAD------------------------------ALGAKKDKVSLKDVLSLFKMRNFW  223 (412)
T ss_dssp             HHHHHHHHHHHHSS---SSSSS-SST------------------------------TSSS------HHHHHHHTTSHHHH
T ss_pred             HHHHHHHHHHHHHcCCcCchhhhhhc------------------------------ccccCCCCCcHHHHHHHhcchhHH
Confidence            66555555554443 33321000000                              000011111233567899999998


Q ss_pred             HHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCC---chhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhhHhHHHH
Q 013992          275 RGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFA---SNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSG  351 (432)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~  351 (432)
                      ...+.......     .+.......+.|.......   ++...|.+.....+.+++...+..++.+|+|.|+.++++..+
T Consensus       224 ~~~l~v~g~~~-----~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i  298 (412)
T PF01306_consen  224 FFVLFVIGVAA-----IYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVI  298 (412)
T ss_dssp             HHHHHHHHHHH-----HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-----HHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHH
Confidence            86554443332     3455544556676654433   245577788888888999999999999999999999998887


Q ss_pred             HHHHHHHHHHH
Q 013992          352 VILSLGVLSAV  362 (432)
Q Consensus       352 ~~~~~~~~~~~  362 (432)
                      +.+=....++.
T Consensus       299 ~~iRi~~~~~~  309 (412)
T PF01306_consen  299 MAIRIIGSGFA  309 (412)
T ss_dssp             HHHHHHHHHT-
T ss_pred             HHHHHHHHhhh
Confidence            77766555544

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.57  E-value=1.4e-13  Score=126.75  Aligned_cols=270  Identities=18%  Similarity=0.170  Sum_probs=190.1

Q ss_pred             hhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhcc----ccchHH-HHHHHHHHHHHHHHHHHhCC------
Q 013992           53 ALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDR----FGRRTS-ILVADFLFFVGAVIMAAAPN------  121 (432)
Q Consensus        53 ~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr----~Grr~~-l~~~~~~~~~~~~~~~~~~~------  121 (432)
                      .+-++.+.+|++....   |.+..+--+--++.-|+.|.++||    +||||. ++.+.+..++.+.++-.+++      
T Consensus        35 Ll~fYTdv~Gis~~~a---G~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k  111 (467)
T COG2211          35 LLFFYTDVFGLSAALA---GTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGK  111 (467)
T ss_pred             HHHHHhcccCCcHHHH---HHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcc
Confidence            3344667788888887   888888888889999999999995    786654 56677888888888887763      


Q ss_pred             hhHHHHHHhhhhccccchhhhHHHHHHhcCC-cccchhHHHHHHHHHHHHHHHHHHHHhhccC----C--CCchHHHHHh
Q 013992          122 PGALITGRVFVGLGVGMASMTSPLYISEASP-AKIRGALVSTNGFLITSGQFLSYLINLAFTR----A--PGTWRWMLGV  194 (432)
Q Consensus       122 ~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~----~--~~~wr~~f~~  194 (432)
                      .....+...+.+++......+-.++.+|+.+ ++||.+..++-.....+|..+...+...+..    .  ..+|+....+
T Consensus       112 ~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~  191 (467)
T COG2211         112 LIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALV  191 (467)
T ss_pred             hHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHH
Confidence            4455667788899998888888899999986 6889999999988888886655444433332    2  1148887777


Q ss_pred             hHHHHHHHHHH-HhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhHHHhhcccch
Q 013992          195 AGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTV  273 (432)
Q Consensus       195 ~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (432)
                      .+++..+..+. ++..+|.+.    +..                             ..++..+.+.+.+....++|+.+
T Consensus       192 ~~vi~~i~~l~~~~~v~ER~~----~~~-----------------------------~~~~~~~~~~~~~~~~~~~Nrp~  238 (467)
T COG2211         192 LGVIGVILLLFCFFNVKERVV----ETQ-----------------------------PTKTGVKLKLKDSFLLIFKNRPL  238 (467)
T ss_pred             HHHHHHHHHHHHHHHhhcccC----ccc-----------------------------cCcccccccHHHHHHHHHccchH
Confidence            77777666655 444555531    000                             00000112223344567889888


Q ss_pred             hHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhhHhHHHHHH
Q 013992          274 RRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVI  353 (432)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~  353 (432)
                      +..++..++...     +..........|.+...+.+...............+++.++...+.+|+|+|+++.++.++..
T Consensus       239 ~~~l~~~l~~~~-----~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~  313 (467)
T COG2211         239 LLLLLMNLLLFI-----AFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLA  313 (467)
T ss_pred             HHHHHHHHHHHH-----HHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHH
Confidence            775554333332     455555555666666666666777777777777778889999999999999999999999888


Q ss_pred             HHHHHHHHHH
Q 013992          354 LSLGVLSAVF  363 (432)
Q Consensus       354 ~~~~~~~~~~  363 (432)
                      ++.+++.+..
T Consensus       314 i~~~~~~f~~  323 (467)
T COG2211         314 VGYLLLYFTP  323 (467)
T ss_pred             HHHHHHHhhc
Confidence            8887777765

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.55  E-value=2.5e-14  Score=133.64  Aligned_cols=148  Identities=17%  Similarity=0.067  Sum_probs=124.8

Q ss_pred             hhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHhCChh--HHHHHH
Q 013992           52 GALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPG--ALITGR  129 (432)
Q Consensus        52 ~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~r  129 (432)
                      ...+++.++++.++.+.   +.+.+.+.++..+++++.|++.||+|||+.+..+.++..++.++..+.++..  .+....
T Consensus       226 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (377)
T TIGR00890       226 GLYKPYGQSLGLSDGFL---VLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATV  302 (377)
T ss_pred             HHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHH
Confidence            34455567788777666   8888999999999999999999999999999999999988888877776433  344567


Q ss_pred             hhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHHHHHH
Q 013992          130 VFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQF  203 (432)
Q Consensus       130 ~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~~~~~  203 (432)
                      ++.|++.+...+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..+ |++.|++.++..++..
T Consensus       303 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       303 ALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIG-FEYTFIVTGAFALTSL  375 (377)
T ss_pred             HHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhc-hhhHHHHHHHHHHHhc
Confidence            788888887777778899999999999999999999999999999999999998877 9999998887666543

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.55  E-value=1.4e-12  Score=116.99  Aligned_cols=286  Identities=14%  Similarity=0.033  Sum_probs=192.6

Q ss_pred             hhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhcccc-----chHHHHH-HHHHHHHHHHHHHH-----hC-----
Q 013992           57 IRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFG-----RRTSILV-ADFLFFVGAVIMAA-----AP-----  120 (432)
Q Consensus        57 i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G-----rr~~l~~-~~~~~~~~~~~~~~-----~~-----  120 (432)
                      +..|++++..-.   +.+.+++.+.. ...+.+|+.+|+.+     ||..+++ |..+...+..+..+     +.     
T Consensus         6 MIvEL~vpA~lv---~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~   81 (403)
T PF03209_consen    6 MIVELGVPAWLV---ALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQS   81 (403)
T ss_pred             HHHHhccHHHHH---HHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccc
Confidence            456777765555   88888887754 45999999999999     8877665 55555555444433     22     


Q ss_pred             --Chh----HHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHh
Q 013992          121 --NPG----ALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGV  194 (432)
Q Consensus       121 --~~~----~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~  194 (432)
                        +.+    ...+...+.|+|.+...+...++++|..|+|+|+++.++......+|.+++..+.+.+.+.++.-|..-.+
T Consensus        82 ~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~  161 (403)
T PF03209_consen   82 SGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVI  161 (403)
T ss_pred             ccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHH
Confidence              222    23445678899999999999999999999999999999999999999999999999888876644544443


Q ss_pred             hHH--HHHHHHHHHhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhHHHhhcccc
Q 013992          195 AGI--PALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRT  272 (432)
Q Consensus       195 ~~~--~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (432)
                      ...  ..+...++..+=.|.+..     +..                           ...++++.+....+++++.+|+
T Consensus       162 ~~~a~i~~~l~~ia~wg~E~r~~-----~~~---------------------------~~~~~~~~~f~~a~~~~~~~~~  209 (403)
T PF03209_consen  162 QGVALIALLLNLIALWGQEPRRS-----RRA---------------------------AAAERPRPPFREAWRQVWASPQ  209 (403)
T ss_pred             HHHHHHHHHHHHHHHHhcccCCc-----ccc---------------------------cCCCCCCccHHHHHHHHHhCCC
Confidence            333  222222333333343110     000                           0011222333456678888888


Q ss_pred             hhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHh-hhCCchhhHhHHHH
Q 013992          273 VRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFID-RTGRKKLLVISLSG  351 (432)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~~~~~~~~~~~~~  351 (432)
                      .++.....+....     +++.....+-.|-.+..+.+..+...+......+.++|....|++.. |.+++++...+...
T Consensus       210 a~~f~~fl~l~t~-----a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~  284 (403)
T PF03209_consen  210 ARRFFVFLFLGTL-----AFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLL  284 (403)
T ss_pred             hhHHHHHHHHHHH-----HHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence            8775554443333     55555555556666777788888889999999999999999999877 56777777788888


Q ss_pred             HHHHHHHHHHHHhccCCCCCccchhccccccc
Q 013992          352 VILSLGVLSAVFHETTSHSPMVSAVETSHFSN  383 (432)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (432)
                      ..+++.++.......+.+.+....+++|+..+
T Consensus       285 ~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G  316 (403)
T PF03209_consen  285 GALAFALIILAGPLGSPWLFRPGVFLLGLGNG  316 (403)
T ss_pred             HHHHHHHHHHHHhcccchHHHHHHHHHHHhhh
Confidence            88887777766655555554444444444433

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.53  E-value=2.1e-13  Score=125.98  Aligned_cols=165  Identities=25%  Similarity=0.362  Sum_probs=144.4

Q ss_pred             cccceeccccchhhhhhhhcc-ccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchH-HHHHHHHHHHHHHHHHHH
Q 013992           41 LLFGYDTGVISGALLYIRDDF-KSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRT-SILVADFLFFVGAVIMAA  118 (432)
Q Consensus        41 ~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~-~l~~~~~~~~~~~~~~~~  118 (432)
                      +.............|.+.++. |.++.+.   +...+...++..++.++.+++.||+|||+ .+..+..+..++.+....
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  261 (352)
T cd06174         185 FLLSFGYYGLLTYLPLYLQEVLGLSAAEA---GLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLAL  261 (352)
T ss_pred             HHHHhHHHHHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            333444445555666666554 7777777   99999999999999999999999999999 999999999999999999


Q ss_pred             hCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHH
Q 013992          119 APNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIP  198 (432)
Q Consensus       119 ~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~  198 (432)
                      .++.+...+..++.|++.+...+....++.|..|+++|++.+++.+....+|..+++.+.+.+.+..+ |++.+++.++.
T Consensus       262 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~-~~~~~~~~~~~  340 (352)
T cd06174         262 APSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGG-YGGVFLILAAL  340 (352)
T ss_pred             hccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-cchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999998776 99999999988


Q ss_pred             HHHHHHHHhhc
Q 013992          199 ALLQFILMLLL  209 (432)
Q Consensus       199 ~~~~~~~~~~~  209 (432)
                      .++..+..+++
T Consensus       341 ~~i~~i~~~~~  351 (352)
T cd06174         341 ALLAALLLLLL  351 (352)
T ss_pred             HHHHHHHheec
Confidence            88777765443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.52  E-value=1.9e-12  Score=114.19  Aligned_cols=264  Identities=14%  Similarity=0.083  Sum_probs=164.5

Q ss_pred             cchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHhCChhHHHHHH
Q 013992           50 ISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGR  129 (432)
Q Consensus        50 ~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r  129 (432)
                      .+|.+..+-+++|.++.+.   +.+....+...++..++.|.++||+|||+.-+..+++++++++ +-..+++..++++|
T Consensus        53 QGpY~Y~LY~~yg~~~~qI---a~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GR  128 (354)
T PF05631_consen   53 QGPYLYALYESYGFSEHQI---AILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGR  128 (354)
T ss_pred             hcchhHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHH
Confidence            4555666668899999998   9999999999999999999999999999999999999999885 56678999999999


Q ss_pred             hhhhccccchhhhHHHH-HHhcCCc----ccchhHHHHHH-HHHHHHHHHHHHHHhhccCCCC-chHHHHHhhHHHHHHH
Q 013992          130 VFVGLGVGMASMTSPLY-ISEASPA----KIRGALVSTNG-FLITSGQFLSYLINLAFTRAPG-TWRWMLGVAGIPALLQ  202 (432)
Q Consensus       130 ~l~G~~~~~~~~~~~~~-i~~~~~~----~~R~~~~~~~~-~~~~~g~~i~~~i~~~l~~~~~-~wr~~f~~~~~~~~~~  202 (432)
                      ++.|++....+..-.++ +.|+-..    +..+..++... ...++-.+...+++.++.+..+ +-..+|....+..++.
T Consensus       129 vlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~  208 (354)
T PF05631_consen  129 VLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVA  208 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHH
Confidence            99999999888877765 5665322    22222222222 2222333444455555554433 1367787777666666


Q ss_pred             HHHH-hhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhHHHhhcccchhHHHHHHH
Q 013992          203 FILM-LLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGV  281 (432)
Q Consensus       203 ~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (432)
                      .++. ...+|...      +..+.                            ++..+.-....+.+.+||+.+..-    
T Consensus       209 ~~~I~~~W~ENyg------~~~~~----------------------------~~~~~~~~~a~~~i~~d~ril~LG----  250 (354)
T PF05631_consen  209 AVLILKTWPENYG------DTSSS----------------------------SSLSGSFREAWRAILSDPRILLLG----  250 (354)
T ss_pred             HHHHHhcccccCC------Ccccc----------------------------cchHHHHHHHHHHHHcCchhHHHH----
Confidence            5553 34456521      00000                            000001112345566777764422    


Q ss_pred             HHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhh-CCchhhHhHHHHHHHHHHH
Q 013992          282 GLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRT-GRKKLLVISLSGVILSLGV  358 (432)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~  358 (432)
                      ..........+..+..|.|..-.   .....--|+++..+.++.++|+.+..++..+. .....+.....+..+++.+
T Consensus       251 ~~qslFE~smy~FVflWtPaL~~---~~~~~P~GlIFssFM~a~MlGS~lf~~l~s~~~~~e~~l~~v~~~aa~~l~~  325 (354)
T PF05631_consen  251 LIQSLFEGSMYLFVFLWTPALDP---DDEELPLGLIFSSFMVAMMLGSSLFSRLLSKSLRPESLLRYVFAVAAVSLAI  325 (354)
T ss_pred             HHHHHHHHHHHHheeeeeceecC---CCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence            22334444555666677776652   22233467788878888899998887665543 3333344444444444333

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.52  E-value=2.3e-13  Score=128.26  Aligned_cols=140  Identities=16%  Similarity=0.203  Sum_probs=123.1

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhhccccchhhhHHHHHHhcC
Q 013992           72 ESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEAS  151 (432)
Q Consensus        72 ~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~  151 (432)
                      ++..+.+.++..++.++.|++.||+|||+.+..+..+.+++.++..+.++.+.+++.+++.|++.+...+.......|.+
T Consensus       252 ~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~  331 (399)
T PRK05122        252 ALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKRV  331 (399)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC
Confidence            55667788888999999999999999999999999988888888888889888888999999999988888878888999


Q ss_pred             CcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHHHHHHHHHhhcCCC
Q 013992          152 PAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLLLPES  212 (432)
Q Consensus       152 ~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~  212 (432)
                      |+++|+++.++++....+|..+++.+.+.+.+..+ |++.|++.++..++..+..++++++
T Consensus       332 ~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~  391 (399)
T PRK05122        332 PPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFG-YPSIFLAAALAALLGLALTWLLYRR  391 (399)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHhccc
Confidence            99999999999999999999999999999988877 9999999888877777665555544

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.51  E-value=2e-13  Score=129.14  Aligned_cols=158  Identities=18%  Similarity=0.171  Sum_probs=129.3

Q ss_pred             cchhhhhhhhccccchh-hhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHhCChhHHHHH
Q 013992           50 ISGALLYIRDDFKSVDR-KTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITG  128 (432)
Q Consensus        50 ~~~~~~~i~~~~~~~~~-~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (432)
                      ..+..+....+.+.+.. .....+.+.+...++..++.+..|++.||+|||+.+..+..+..++.+...+.++.+.+.+.
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (408)
T PRK09874        238 IAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGIL  317 (408)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            33444544444332222 22223666777788888999999999999999999999998888888888888888889999


Q ss_pred             HhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHHHHHHHHHhh
Q 013992          129 RVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLL  208 (432)
Q Consensus       129 r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~  208 (432)
                      +++.|++.+...+.....+.+..|+++|++.+++.+....+|..+||.+++.+.+..+ |++.|++.++..++..+..++
T Consensus       318 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~~  396 (408)
T PRK09874        318 RFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYG-FRAVFLVTAGVVLFNAVYSWN  396 (408)
T ss_pred             HHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988999999999999999999999999999999999999998887 999999998887777666443

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.50  E-value=3.4e-13  Score=128.88  Aligned_cols=152  Identities=12%  Similarity=0.038  Sum_probs=124.6

Q ss_pred             cchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccc--cchHHHHH--HHHHHHHHHHHHHHhCChhHH
Q 013992           50 ISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRF--GRRTSILV--ADFLFFVGAVIMAAAPNPGAL  125 (432)
Q Consensus        50 ~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~--Grr~~l~~--~~~~~~~~~~~~~~~~~~~~~  125 (432)
                      ....+|.+.+++|.+..+.   +++.+...++..+++++.|+++||.  ++|+....  +.++.+++.++....++++.+
T Consensus       260 ~~~~l~~~~~~~g~s~~~~---g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~  336 (455)
T TIGR00892       260 PIIFLVPYAKDKGVDEYEA---AFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGL  336 (455)
T ss_pred             hHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Confidence            3445566667788888777   8899999999999999999999983  44443333  344445555666778899999


Q ss_pred             HHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHHHHHHH
Q 013992          126 ITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFI  204 (432)
Q Consensus       126 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~~~~~~  204 (432)
                      ++.+++.|++.+...+...+++.|.+|+++|++.+++++....+|..+||.+++.+.+..++|++.|++.++..++..+
T Consensus       337 ~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~  415 (455)
T TIGR00892       337 VIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL  415 (455)
T ss_pred             HHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999998775699999998876655444

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.50  E-value=4e-13  Score=125.70  Aligned_cols=152  Identities=13%  Similarity=0.022  Sum_probs=131.5

Q ss_pred             cchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHhCChhHHHHHH
Q 013992           50 ISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGR  129 (432)
Q Consensus        50 ~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r  129 (432)
                      .....|...+|+|.+....   +.+.+...++..+..++.+++.||+|+|+.+..+.+...+..++.++++|.+.+++.+
T Consensus       224 ~~~~~~~~l~~~g~s~~~~---g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q  300 (382)
T TIGR00902       224 YYGFSAIYWQAAGISASAT---GLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQ  300 (382)
T ss_pred             HHHHHHHHHHHCCCCHhHH---HHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHH
Confidence            3445565567789888888   8899999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccccchhhhHHHHHHhcCCcccchhHHHHHH-HHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHHHHHHHHHh
Q 013992          130 VFVGLGVGMASMTSPLYISEASPAKIRGALVSTNG-FLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILML  207 (432)
Q Consensus       130 ~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~-~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~  207 (432)
                      ++.|++.+...+....++.+. |+++|++..++++ ....+|..+++.++|++.+..+ + ..|+..+...++..++..
T Consensus       301 ~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g-~-~~~~~~~~~~~~~~~~~~  376 (382)
T TIGR00902       301 ILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLG-A-GTFVFMAIIAAAAFFLIP  376 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-H-HHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998 9999999999976 5678999999999999999886 6 556666666665554433

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.49  E-value=4e-13  Score=125.56  Aligned_cols=151  Identities=17%  Similarity=0.182  Sum_probs=126.0

Q ss_pred             hhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhhcc
Q 013992           56 YIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLG  135 (432)
Q Consensus        56 ~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~  135 (432)
                      ++.+++|.++.+.   +++.+.......++.++.|++.||+|||+++..+.++..+......+.++.+.+.+.+++.|++
T Consensus       225 ~~~~~~g~~~~~~---g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  301 (375)
T TIGR00899       225 LIIHELGLPDKLA---GLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIF  301 (375)
T ss_pred             HHHHHcCCCHHHH---HHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456788877776   7777777777778889999999999999999888777666666666677888888889999999


Q ss_pred             ccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHHHHHHHHHhhcCC
Q 013992          136 VGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLLLPE  211 (432)
Q Consensus       136 ~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e  211 (432)
                      .+...+....++.|..|++ |+++.++++....+|..+++.+.+.+.+..+ |+..|++.++..++..+...+++|
T Consensus       302 ~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~  375 (375)
T TIGR00899       302 IGILAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERWS-YHAVYWFAIVMLIVALFCLLLIKD  375 (375)
T ss_pred             HHHHHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHheecC
Confidence            8888888888999998865 6799999999999999999999999988877 999999998888777777666554

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK12382 putative transporter; Provisional

Probab=99.49  E-value=5.1e-13  Score=125.61  Aligned_cols=150  Identities=16%  Similarity=0.199  Sum_probs=127.3

Q ss_pred             hhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHhCChhHHHHHHhh
Q 013992           52 GALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVF  131 (432)
Q Consensus        52 ~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l  131 (432)
                      ...|...++.+.+.  .   ++..+.+.++..+++++.|++.||+|||+.+..+..+.+++.++..+.++.+.+.+.+++
T Consensus       237 ~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  311 (392)
T PRK12382        237 TFVSLYFASKGWAM--A---GFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAAL  311 (392)
T ss_pred             HHHHHHHHhcCCch--h---HHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            34444445555432  3   556667778888999999999999999999999999999998888888898888889999


Q ss_pred             hhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHHHHHHHHHh
Q 013992          132 VGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILML  207 (432)
Q Consensus       132 ~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~  207 (432)
                      .|++.+...+.....+.|.+|+++|+++.++++....+|..+++.+.+++.+..+ |++.|.+.+...++..+..+
T Consensus       312 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~  386 (392)
T PRK12382        312 TGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFG-YPSVFLAGAISAVLGIIVTI  386 (392)
T ss_pred             HHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHHHHH
Confidence            9999998888888889999999999999999999999999999999999999887 99999999887777766644

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.47  E-value=3.2e-11  Score=110.48  Aligned_cols=171  Identities=20%  Similarity=0.322  Sum_probs=136.5

Q ss_pred             HHHhhcccceeccc-cchhhhhhhhccc----cchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccc-cchHHHHHHHHHH
Q 013992           36 AGIGGLLFGYDTGV-ISGALLYIRDDFK----SVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRF-GRRTSILVADFLF  109 (432)
Q Consensus        36 ~~~~~~~~~~~~~~-~~~~~~~i~~~~~----~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~  109 (432)
                      ++...+..-++.+. -.+..-++..+++    .++.++   .-+.+.|..-.=+..+++|+++||+ |+|+++..|.+++
T Consensus        26 if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A---~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~  102 (498)
T COG3104          26 IFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHA---TGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILM  102 (498)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhh---HHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence            33444544444332 3344455666666    887777   5555666555556688999999995 9999999999999


Q ss_pred             HHHHHHHHHhC--ChhHHHHHHhhhhccccchhhhHHHHHHhcCCccc--chhHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 013992          110 FVGAVIMAAAP--NPGALITGRVFVGLGVGMASMTSPLYISEASPAKI--RGALVSTNGFLITSGQFLSYLINLAFTRAP  185 (432)
Q Consensus       110 ~~~~~~~~~~~--~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~--R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~  185 (432)
                      .+|.++.+.+.  +...+.++-.+.++|.|..=+...+++.|.+|+++  |-..++++.++.++|..++|++.+++.+..
T Consensus       103 ~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~  182 (498)
T COG3104         103 AIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINY  182 (498)
T ss_pred             HHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhh
Confidence            99999999984  78899999999999999999999999999998644  677888999999999999999999999988


Q ss_pred             CchHHHHHhhHHHHHHHHHHHhhcC
Q 013992          186 GTWRWMLGVAGIPALLQFILMLLLP  210 (432)
Q Consensus       186 ~~wr~~f~~~~~~~~~~~~~~~~~~  210 (432)
                      + |...|...++-....++.+...+
T Consensus       183 g-~~~gF~~aavGm~~gl~~f~~~~  206 (498)
T COG3104         183 G-WHVGFGLAAVGMIIGLVIFLLGR  206 (498)
T ss_pred             C-HHHHHHHHHHHHHHHHHHHHHcc
Confidence            8 99999999887777766655554

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.46  E-value=1.6e-12  Score=122.11  Aligned_cols=160  Identities=18%  Similarity=0.122  Sum_probs=125.9

Q ss_pred             ccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHhC-ChhHHHH
Q 013992           49 VISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAP-NPGALIT  127 (432)
Q Consensus        49 ~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~  127 (432)
                      ......|.+.+++|.+..+.   +...+.+.++..++.++.|++.||+|||+.+..+..+..++..+....+ +....  
T Consensus       223 ~~~~~lp~~l~~~g~s~~~a---g~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--  297 (393)
T PRK09705        223 SLIAWLPAFYIEIGASAQYS---GSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--  297 (393)
T ss_pred             HHHHHHHHHHHHcCCChhhh---hHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--
Confidence            34445666666788888777   8899999999999999999999999999999988888777766554333 22222  


Q ss_pred             HHhhhhccccchhhhHHHHHHhcCC-cccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHHHHHHHH-
Q 013992          128 GRVFVGLGVGMASMTSPLYISEASP-AKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFIL-  205 (432)
Q Consensus       128 ~r~l~G~~~~~~~~~~~~~i~~~~~-~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~~~~~~~-  205 (432)
                      .-++.|++.+...+.......+..+ +++|++..++.+....++..++|.+.+++.+..++|+..|++.++.+++..+. 
T Consensus       298 ~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~  377 (393)
T PRK09705        298 WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIIT  377 (393)
T ss_pred             HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Confidence            2345688888788877777777775 57889999999999999999999999999998877999999888777766655 


Q ss_pred             HhhcCCCH
Q 013992          206 MLLLPESP  213 (432)
Q Consensus       206 ~~~~~e~~  213 (432)
                      +.+.||++
T Consensus       378 ~~~~~~~~  385 (393)
T PRK09705        378 LRFAPARF  385 (393)
T ss_pred             HHhccccc
Confidence            55667763

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.45  E-value=1.2e-12  Score=124.10  Aligned_cols=159  Identities=13%  Similarity=0.137  Sum_probs=132.8

Q ss_pred             chhhhhhhhc-cccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHhCChhHHHHHH
Q 013992           51 SGALLYIRDD-FKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGR  129 (432)
Q Consensus        51 ~~~~~~i~~~-~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r  129 (432)
                      ....|.+.++ +|.+....   +++.+...++..++.++.+++.||.++++.+..+.++.+++.++..+.++.+...++.
T Consensus       243 ~~~~p~~~~~~~g~~~~~~---g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (417)
T PRK10489        243 RVLYPALADEVWQMGAAQI---GLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCL  319 (417)
T ss_pred             HHhhHHHHHhccCCChhHh---HHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHH
Confidence            3455666555 88877777   8899999999999999999999998888888888888888888888888888888888


Q ss_pred             hhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHHHHH-HHHHhh
Q 013992          130 VFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQ-FILMLL  208 (432)
Q Consensus       130 ~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~~~~-~~~~~~  208 (432)
                      ++.|++.+...+...+++.|..|++.|+++++++.....+|..+|+.+.+.+.+..+ ++..++..+...++. .+.+..
T Consensus       320 ~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~  398 (417)
T PRK10489        320 ALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMT-PVASASASGFGLLIIGVLLLLV  398 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhc-hhhHHHHHHHHHHHHHHHHHHh
Confidence            999998887777778899999999999999999999999999999999999999877 788887776555444 444666


Q ss_pred             cCCCH
Q 013992          209 LPESP  213 (432)
Q Consensus       209 ~~e~~  213 (432)
                      ++|.+
T Consensus       399 ~~~~~  403 (417)
T PRK10489        399 LGELR  403 (417)
T ss_pred             ccccc
Confidence            67663

>PRK03545 putative arabinose transporter; Provisional

Probab=99.44  E-value=3.8e-12  Score=119.57  Aligned_cols=150  Identities=13%  Similarity=0.126  Sum_probs=120.1

Q ss_pred             hhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHH-HHHHhCChhHHHHHHhh
Q 013992           53 ALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAV-IMAAAPNPGALITGRVF  131 (432)
Q Consensus        53 ~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~r~l  131 (432)
                      ..|.+.+++|.+..+.   +++.+...++..+++++.|++.||+|||+.. .+..+..++.. +....++.+.+++..++
T Consensus       228 ~~~~l~~~~g~s~~~~---~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~l  303 (390)
T PRK03545        228 IEPFVQQVAGLSENFA---TLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCLLLLLPAANSEWHLSVLSIF  303 (390)
T ss_pred             HHHHHHHhcCCCccHH---HHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence            3445566678877777   8888889999999999999999999988754 44444444443 34556778888888899


Q ss_pred             hhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHHHHHHHHHhh
Q 013992          132 VGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLL  208 (432)
Q Consensus       132 ~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~  208 (432)
                      .|++.+...+.....+.|..| ++|++++++++....+|..+|+++++.+.+..+ ++..|++.+++.++..+....
T Consensus       304 ~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g-~~~~~~~~~~~~~~~~~~~~~  378 (390)
T PRK03545        304 WGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLG-LSSIGYVGAALALAALVWSIL  378 (390)
T ss_pred             HHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-hhHHHHHHHHHHHHHHHHHHH
Confidence            999887777777778888876 578999999999999999999999999999987 999999998887776666433

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.44  E-value=1.1e-12  Score=122.89  Aligned_cols=355  Identities=15%  Similarity=0.127  Sum_probs=203.5

Q ss_pred             HHHHHHHHHhhcccceeccccchhhhhhhhccccchhhhH--HHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHH
Q 013992           30 LRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTL--LQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADF  107 (432)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~  107 (432)
                      +.......+-.+..++.........+.....++.+.....  ..+.......+...+.++..|.++||+|||..+....+
T Consensus        21 ~~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~  100 (463)
T KOG2816|consen   21 RHLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLF  100 (463)
T ss_pred             hHHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHH
Confidence            3444455555566666666666666776666653322211  11222223356778899999999999999999999998


Q ss_pred             HHHHHHHHHHHhCChhHHHHHHhhhhccc--cchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 013992          108 LFFVGAVIMAAAPNPGALITGRVFVGLGV--GMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAP  185 (432)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~r~l~G~~~--~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~  185 (432)
                      ...+..+...+.. +|.++    +.++..  +.......++++|....++|....++.+.....+..++|.+++.+.+..
T Consensus       101 ~~~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~  175 (463)
T KOG2816|consen  101 GTILPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFL  175 (463)
T ss_pred             HHHHhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence            8888877776655 33333    444432  3356677788999999999999999999999999999999999998876


Q ss_pred             CchHHHHHhhHHHHHHHHHH-HhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhH
Q 013992          186 GTWRWMLGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINL  264 (432)
Q Consensus       186 ~~wr~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (432)
                      + .-..|.+.....++..+. ++++||+-..   +.+.+   ...+.....               ........+.....
T Consensus       176 ~-~a~~f~ia~~~~~~~~~y~~~~l~Esl~~---~~~~~---~~~~~~~~~---------------~~~~~~~~~~~~~~  233 (463)
T KOG2816|consen  176 G-IALVFLIAAASGILSLLYMLLFLPESLQE---KERSD---ATLRELTPG---------------SLDSSHVADAFQSL  233 (463)
T ss_pred             C-chHHHHHHHHHHHHHHHHHhhccccccCc---ccccc---ccccccCCC---------------cccchhhhhhhhhh
Confidence            6 777888888777776666 7778887320   10000   000000000               00000000000111


Q ss_pred             HHhhcccchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHH-HHHhhhCCch
Q 013992          265 VKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSI-YFIDRTGRKK  343 (432)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~l~d~~~~~~  343 (432)
                      .+.-++|......+    ..++..........-..+.|+....+.+..+.+.+.........++.++.. .+...++.|+
T Consensus       234 ~~~~~~r~~l~l~l----~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~  309 (463)
T KOG2816|consen  234 TKVGPDRLLLLLLL----VAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKR  309 (463)
T ss_pred             cccCCCccchHHHH----HHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            11111121211111    111111111111110223455566677788888777777777888887777 6677788888


Q ss_pred             hhHhHHHHHHHHHHHHHHHHhccCCCCCccchhcccccccccccccccccccCccchhhhhccCCCCccccccccccccc
Q 013992          344 LLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKVKG  423 (432)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~g~~~~~~~~~~g  423 (432)
                      ....+...-.+......+....   |.... ......+.....+.+.+..+-   ....+.++.  ..++.+...+...+
T Consensus       310 ~i~lGl~~~~~~~~~~af~~~~---w~~~~-~~v~~~~~~~~~pa~~s~~s~---~v~~~e~g~--v~~~is~i~~l~~~  380 (463)
T KOG2816|consen  310 LISLGLLSEFLQLLLFAFATET---WMMFA-AGVVVALAGIVFPAIRAFASI---LVSPEEQGK--VFGIISGIEGLSGV  380 (463)
T ss_pred             HhhHHHHHHHHHHHHHHHhccc---hhhhH-HHHHHHhhcchhHHHHhHHHh---hcccccccc--hhhHHHHHHHHhhh
Confidence            8888877777777776665433   32222 222222222223222222222   233366777  66666655555444


Q ss_pred             c
Q 013992          424 I  424 (432)
Q Consensus       424 ~  424 (432)
                      +
T Consensus       381 ~  381 (463)
T KOG2816|consen  381 V  381 (463)
T ss_pred             h
Confidence            3

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.44  E-value=2e-12  Score=124.31  Aligned_cols=170  Identities=14%  Similarity=0.141  Sum_probs=122.6

Q ss_pred             HHHhhcccceeccccchhhh-hhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHH
Q 013992           36 AGIGGLLFGYDTGVISGALL-YIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAV  114 (432)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~  114 (432)
                      +++..++.+.........+| ++.+++|.+..+.   ++..+...++..++.+++|+++||+|||+.++....+..++..
T Consensus       263 ~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a---~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~  339 (467)
T PRK09556        263 LCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDA---INTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFT  339 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHH
Confidence            33333443333333445566 4557789988887   8888889999999999999999999999887765544444332


Q ss_pred             H--HHHhCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHH-HHHHHHHHHhhccC--------
Q 013992          115 I--MAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITS-GQFLSYLINLAFTR--------  183 (432)
Q Consensus       115 ~--~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~-g~~i~~~i~~~l~~--------  183 (432)
                      +  ....++.....+.+++.|++.............|.+|+++|+.+.|+.+....+ |..++|.+.|.+.+        
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~  419 (467)
T PRK09556        340 LGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPI  419 (467)
T ss_pred             HHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhccccccccc
Confidence            2  233456666777888888654333333345677999999999999999888776 77899999999998        


Q ss_pred             ----CCCchHHHHHhhHHHHHHHHHHHhhc
Q 013992          184 ----APGTWRWMLGVAGIPALLQFILMLLL  209 (432)
Q Consensus       184 ----~~~~wr~~f~~~~~~~~~~~~~~~~~  209 (432)
                          ..+ |+..|++.++..++..+..+++
T Consensus       420 ~~~~~~~-~~~~f~~~~~~~~~~~~~~~~~  448 (467)
T PRK09556        420 FGYTLTG-WAGTFAALDIAAIGCICLMAIV  448 (467)
T ss_pred             ccccccC-hHHHHHHHHHHHHHHHHHHHHH
Confidence                445 9999998877777766554443

>PRK03699 putative transporter; Provisional

Probab=99.43  E-value=1.5e-12  Score=122.43  Aligned_cols=158  Identities=16%  Similarity=0.071  Sum_probs=130.1

Q ss_pred             cchhhhhhh-hccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHhCChhHHHHH
Q 013992           50 ISGALLYIR-DDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITG  128 (432)
Q Consensus        50 ~~~~~~~i~-~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (432)
                      +....|.+. +++|.+..+.   +.+.+.+.++..++.++.|+++||+|||+.+.....+..+..++....++...+.+.
T Consensus       224 ~~~~~p~~l~~~~g~s~~~~---~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (394)
T PRK03699        224 FISWVPEYAQKKFGMSLEDA---GNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYA  300 (394)
T ss_pred             HHHHHHHHHHHHcCCChHHh---hHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHH
Confidence            344556555 6678888887   889999999999999999999999999999988887777777777777888777777


Q ss_pred             HhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHHHHHHHHHhh
Q 013992          129 RVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLL  208 (432)
Q Consensus       129 r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~  208 (432)
                      .++.|++.+...+...++..|..|+ ++++..+.......+|..++|.+.+++.+..+ |+..++..++..++..+.+..
T Consensus       301 ~~~~G~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~  378 (394)
T PRK03699        301 ILGLGFFSSAIYTTIITLGSQQTKV-ASPKLVNFILTCGTIGTMLTFVVTSPIVAHFG-LQAALLTANGLYAVVFVMCIL  378 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccC-CCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhC-chhhhhhhHHHHHHHHHHHHH
Confidence            8889998888888877788887764 46788888888889999999999999999877 999999888877777666666


Q ss_pred             cCCC
Q 013992          209 LPES  212 (432)
Q Consensus       209 ~~e~  212 (432)
                      +++.
T Consensus       379 ~~~~  382 (394)
T PRK03699        379 LGFV  382 (394)
T ss_pred             HHHH
Confidence            5544

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.43  E-value=5.2e-13  Score=125.56  Aligned_cols=151  Identities=17%  Similarity=0.110  Sum_probs=116.9

Q ss_pred             ccccchhhhhhh-hccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHH--HHHHH--hCC
Q 013992           47 TGVISGALLYIR-DDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGA--VIMAA--APN  121 (432)
Q Consensus        47 ~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~--~~~~~--~~~  121 (432)
                      ........|.+. +++|.+..+.   +...+...++..++.++.|+++||+|||+.+..+..+..+..  +...+  .++
T Consensus       235 ~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (394)
T TIGR00883       235 FYLITTYLPTYLTQTLGLSANSA---LLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGS  311 (394)
T ss_pred             HHHHHHHHHHHHHHhcCCChhHH---HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            334445556655 6678777777   888888899999999999999999999998876555444333  22222  256


Q ss_pred             hhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHH-HHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHHH
Q 013992          122 PGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVST-NGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPAL  200 (432)
Q Consensus       122 ~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~-~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~~  200 (432)
                      .+.+.+..++.|++.+...+...+++.|.+|+++|+++.++ ......+|..++|.+++++.+..+.|++.++..++..+
T Consensus       312 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~l  391 (394)
T TIGR00883       312 FTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALAL  391 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHHH
Confidence            67777788889998888889999999999999999999998 45667788999999999999877668888777665444

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.42  E-value=2.3e-12  Score=120.65  Aligned_cols=151  Identities=15%  Similarity=0.156  Sum_probs=122.1

Q ss_pred             hhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHhCChhHHHHHHhh
Q 013992           52 GALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVF  131 (432)
Q Consensus        52 ~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l  131 (432)
                      ..+|.+.++.|.+..+.   +...+...++..+++++.|++.||+|+|+++..+..+..++.+...  . ........++
T Consensus       221 ~~lp~~~~~~g~s~~~~---g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l  294 (381)
T PRK03633        221 GLMPLYLNHQGMSDASI---GFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFI  294 (381)
T ss_pred             HHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHH
Confidence            34676667777777666   8888899999999999999999999999999888888777665443  2 2344456777


Q ss_pred             hhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHHHHHHHHHhhc
Q 013992          132 VGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLLL  209 (432)
Q Consensus       132 ~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~  209 (432)
                      .|++.....|...+.+.|..|+++++...+.......+|..+||.+++++.++.+ |++.|.+.+...++..+..+..
T Consensus       295 ~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~~~  371 (381)
T PRK03633        295 LGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYS-DNLLFIMIASVSFIYLLMLLRK  371 (381)
T ss_pred             HHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHHHHhc
Confidence            8887777889998999999998888888888888899999999999999999887 9999998887776665555444

>TIGR00897 2A0118 polyol permease family

Probab=99.42  E-value=3e-12  Score=120.68  Aligned_cols=156  Identities=12%  Similarity=0.023  Sum_probs=119.8

Q ss_pred             cccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHH-HHHHHHHHHHHHHHH-----hCC
Q 013992           48 GVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSIL-VADFLFFVGAVIMAA-----APN  121 (432)
Q Consensus        48 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~-~~~~~~~~~~~~~~~-----~~~  121 (432)
                      .......|.+.+++|.+..+.   +.+.+...++..++.++.|+++||+|||+.+. .+.+..+++.+....     .++
T Consensus       239 ~~~~~~~p~~~~~~g~s~~~~---~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~  315 (402)
T TIGR00897       239 FGFAVFLPMFVAELGFSTSEW---LQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHS  315 (402)
T ss_pred             HHHHHHHHHHHHHcCCChhHH---HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence            334456677778888887777   88888889999999999999999999998764 333344443333322     246


Q ss_pred             hhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHHHH
Q 013992          122 PGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALL  201 (432)
Q Consensus       122 ~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~~~  201 (432)
                      .+...+..++.|++.+...+. ...+.|..| ++|+++.++.+....+|..++|.+.+.+.+..+ |+..|++.++..++
T Consensus       316 ~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g-~~~~~~~~a~~~~i  392 (402)
T TIGR00897       316 FAVALIIAIALGIFLAGYVPL-AAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFG-AIGVVWIFAALYVV  392 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hHHHHHHHHHHHHH
Confidence            667777888889887766554 456677655 579999999999999999999999999999887 99999998887777


Q ss_pred             HHHHHhhc
Q 013992          202 QFILMLLL  209 (432)
Q Consensus       202 ~~~~~~~~  209 (432)
                      ..++..++
T Consensus       393 ~~~~~~~~  400 (402)
T TIGR00897       393 SAFLTAFI  400 (402)
T ss_pred             HHHHHHHh
Confidence            76665554

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.42  E-value=6.6e-12  Score=121.43  Aligned_cols=160  Identities=13%  Similarity=0.096  Sum_probs=116.2

Q ss_pred             ccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHh--CCh-h-H
Q 013992           49 VISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAA--PNP-G-A  124 (432)
Q Consensus        49 ~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~-~-~  124 (432)
                      ......|.+.+++|.+....   .+......+...++.++.++++||+|||++++.+.++.+++.++.+..  .+. . .
T Consensus       289 ~~~~~~p~i~~~~g~~~~~~---~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~  365 (479)
T PRK10077        289 VVLYYAPEIFKTLGASTDIA---LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIV  365 (479)
T ss_pred             HHHHHHHHHHHHcCCCCchH---HHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHH
Confidence            34445678888888876666   556666777888999999999999999999999999998888776543  121 1 2


Q ss_pred             HHHHHhhhhccccc-hhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhcc------CCCCchHHHHHhhHH
Q 013992          125 LITGRVFVGLGVGM-ASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFT------RAPGTWRWMLGVAGI  197 (432)
Q Consensus       125 ~~~~r~l~G~~~~~-~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~------~~~~~wr~~f~~~~~  197 (432)
                      ...+.++.+.+.+. ..+....++.|.+|+++|++++++......+|..+++.+.+.+.      +..+ |++.|++.++
T Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~  444 (479)
T PRK10077        366 ALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFH-NGFSYWIYGC  444 (479)
T ss_pred             HHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhcc-CccHHHHHHH
Confidence            22233344443332 23667789999999999999999999999999988866655433      4455 8888888887


Q ss_pred             HHHHHHHH-HhhcCCC
Q 013992          198 PALLQFIL-MLLLPES  212 (432)
Q Consensus       198 ~~~~~~~~-~~~~~e~  212 (432)
                      .+++..++ +++.||+
T Consensus       445 ~~~~~~~~~~~~~~e~  460 (479)
T PRK10077        445 MGVLAALFMWKFVPET  460 (479)
T ss_pred             HHHHHHHHHHhccccC
Confidence            76666665 4556776

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.42  E-value=1.7e-12  Score=125.43  Aligned_cols=175  Identities=14%  Similarity=0.063  Sum_probs=128.6

Q ss_pred             HHHHHhhcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHH
Q 013992           34 FSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGA  113 (432)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~  113 (432)
                      ...++..+.............|.+.+++|.+..+.   ++......++..++.++.|+++||+|||+.+..+.++..++.
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~  363 (481)
T TIGR00879       287 LGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHA---FLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICL  363 (481)
T ss_pred             HHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHH---HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            33333333333334445556778888888877666   788888888999999999999999999999999988888877


Q ss_pred             HHHHH-----hC------ChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhcc
Q 013992          114 VIMAA-----AP------NPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFT  182 (432)
Q Consensus       114 ~~~~~-----~~------~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~  182 (432)
                      ++.++     .+      +...+....++.+.......+....++.|.+|+++|++++++......+|.++++.+.+.+.
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~  443 (481)
T TIGR00879       364 FVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTML  443 (481)
T ss_pred             HHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            76652     11      22222223333332222334566677899999999999999999999999999999999988


Q ss_pred             CCCCchHHHHHhhHHHHHHHHHH-HhhcCCC
Q 013992          183 RAPGTWRWMLGVAGIPALLQFIL-MLLLPES  212 (432)
Q Consensus       183 ~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~  212 (432)
                      +..+ |++.|++.++++++..++ +++.||+
T Consensus       444 ~~~~-~~~~f~~~~~~~~~~~i~~~~~~~~~  473 (481)
T TIGR00879       444 ESIG-VGGVFIFFGGLNVLGLIFVYFFLPET  473 (481)
T ss_pred             HhcC-ccceehhHHHHHHHHHHHHheecccC
Confidence            8776 999999988887777666 4556765

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK09952 shikimate transporter; Provisional

Probab=99.41  E-value=4.2e-12  Score=120.95  Aligned_cols=154  Identities=15%  Similarity=0.122  Sum_probs=113.2

Q ss_pred             hhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHH---hC-ChhHHHHHHhh
Q 013992           56 YIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAA---AP-NPGALITGRVF  131 (432)
Q Consensus        56 ~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~---~~-~~~~~~~~r~l  131 (432)
                      ++.+++|.+....   ..+.....+...++.++.|+++||+|||++++.+.++..++.+....   .. +...+++..++
T Consensus       276 y~~~~~g~s~~~~---~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  352 (438)
T PRK09952        276 YSTQNLGLPRELF---LNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIML  352 (438)
T ss_pred             HHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            4556677766544   44444555667788899999999999999998887766555433322   22 34444555677


Q ss_pred             hhccccchhhhHHHHHHhcCCcccchhHHHHHH-HHHHHHHHHHHHHHhhccCCC-CchHHHHHhhHHHHHHHHHHHhhc
Q 013992          132 VGLGVGMASMTSPLYISEASPAKIRGALVSTNG-FLITSGQFLSYLINLAFTRAP-GTWRWMLGVAGIPALLQFILMLLL  209 (432)
Q Consensus       132 ~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~-~~~~~g~~i~~~i~~~l~~~~-~~wr~~f~~~~~~~~~~~~~~~~~  209 (432)
                      .+++.+...+...+++.|.+|++.|+.+.++.. .+..+|..++|.+.+++.+.. ++|+..+.+.++..++..+..+.+
T Consensus       353 ~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~  432 (438)
T PRK09952        353 ANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLM  432 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence            788888778888899999999999988888844 445588999999999998743 359998888888777777776667


Q ss_pred             CCC
Q 013992          210 PES  212 (432)
Q Consensus       210 ~e~  212 (432)
                      +|+
T Consensus       433 ~~~  435 (438)
T PRK09952        433 KDN  435 (438)
T ss_pred             ccc
Confidence            665

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.40  E-value=3.4e-11  Score=107.86  Aligned_cols=305  Identities=14%  Similarity=0.036  Sum_probs=195.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHH-HHHHHHHHHHHHhCC--hh-HHHHHHhhhhccccchhhhHHH
Q 013992           70 LQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVAD-FLFFVGAVIMAAAPN--PG-ALITGRVFVGLGVGMASMTSPL  145 (432)
Q Consensus        70 ~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~-~~~~~~~~~~~~~~~--~~-~~~~~r~l~G~~~~~~~~~~~~  145 (432)
                      +.+...++..+..++..|+.|.++|+.|+||..+... .+..++..+..+.++  ++ ..++...+..++.........+
T Consensus        59 ~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyds  138 (438)
T COG2270          59 YWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYDS  138 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehhh
Confidence            3488888999999999999999999999777665544 444445555556554  44 4455567788888888888999


Q ss_pred             HHHhcCCcccchhHHHHHHHHHHHHHHHHHHHH--hhcc----------------CCCCchHHHHHhhHHHHHHHHHH-H
Q 013992          146 YISEASPAKIRGALVSTNGFLITSGQFLSYLIN--LAFT----------------RAPGTWRWMLGVAGIPALLQFIL-M  206 (432)
Q Consensus       146 ~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~--~~l~----------------~~~~~wr~~f~~~~~~~~~~~~~-~  206 (432)
                      ++.+..++++-++..+.-.....+|..+.-++.  ....                +.. +=|..+.+.++..++..+- +
T Consensus       139 ~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~ri~~~l~A~W~li~~iPm~  217 (438)
T COG2270         139 MLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGE-DVRITGLLAALWWLLFALPMI  217 (438)
T ss_pred             HhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccc-cchhHHHHHHHHHHHHHhHHH
Confidence            999999998888887776666666666554442  1111                111 3577888888766665555 5


Q ss_pred             hhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhHHHhhcccchhHHHHHHHHHHHH
Q 013992          207 LLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVF  286 (432)
Q Consensus       207 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (432)
                      +..+|.++-   +..+.                   ....+        .-++-+.+.++..+++++.+     +++..+
T Consensus       218 ~~v~~~~~~---~~~~~-------------------~~l~~--------g~k~L~~t~k~i~~~~~i~~-----FLiA~~  262 (438)
T COG2270         218 LNVHDAEKI---SSPPP-------------------TALRN--------GFKELKSTFKEIRGRKNLVL-----FLIARF  262 (438)
T ss_pred             hcccccccc---cccch-------------------HHHHH--------HHHHHHHHHHHHhcccchHH-----HHHHHH
Confidence            556665420   00000                   00000        00111234455666665544     344445


Q ss_pred             hhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhhHhHHHHHHHHHHHHHHHHhcc
Q 013992          287 QQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHET  366 (432)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (432)
                      ..-.+..++......|.....+.+..+..+......+.+++|.++.|++.||+|.|+++..+.++..+.++...+...  
T Consensus       263 ~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~--  340 (438)
T COG2270         263 FYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEG--  340 (438)
T ss_pred             HHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccc--
Confidence            555678888888888988777788899999999999999999999999999999999988888877776655444432  


Q ss_pred             CCCCCccchhcccccccccccccccccccCccchhhhhccCCCCcccccccc
Q 013992          367 TSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHS  418 (432)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~g~~~~~~  418 (432)
                       .......+++.+.+.+...   ++.-+-....+|++..++  --|+-+...
T Consensus       341 -~~~f~i~gll~g~s~G~~q---A~SRSy~~~lvp~~k~~~--fFglyaltg  386 (438)
T COG2270         341 -ELDFWILGLLVGTSLGGAQ---ASSRSYLARLVPKGKEGR--FFGLYALTG  386 (438)
T ss_pred             -cHHHHHHHHHHHHhcchHH---HHHHHHHHHhCCCccccc--eeehhhhhh
Confidence             2223333444444433222   222233333455566666  566554433

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.40  E-value=4.2e-12  Score=119.38  Aligned_cols=163  Identities=18%  Similarity=0.149  Sum_probs=115.7

Q ss_pred             hcccceeccccchhhhhh-hhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchH--HHH------HHHHHHH
Q 013992           40 GLLFGYDTGVISGALLYI-RDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRT--SIL------VADFLFF  110 (432)
Q Consensus        40 ~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~--~l~------~~~~~~~  110 (432)
                      .+.............|.+ .++++.+..+.   +++.+...++..++.++.|+++||+|||+  ...      .+.++..
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (399)
T TIGR00893       224 QFLVNIGLGFFLTWFPTYLVQERGLSILEA---GFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLS  300 (399)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHhcccHHHh---hHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHH
Confidence            333344444455555654 45677777777   88889999999999999999999999996  111      1111111


Q ss_pred             HHHHHHHHhCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHH
Q 013992          111 VGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRW  190 (432)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~  190 (432)
                      +........++.+.......+.+.+.+ ..+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..++|++
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~  379 (399)
T TIGR00893       301 LLMFATNYVNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAG  379 (399)
T ss_pred             HHHHHhccchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhH
Confidence            111111222344444444445455544 7888889999999999999999999999999999999999999998766999


Q ss_pred             HHHhhHHHHHHHHHHH
Q 013992          191 MLGVAGIPALLQFILM  206 (432)
Q Consensus       191 ~f~~~~~~~~~~~~~~  206 (432)
                      .|++.++..++..+..
T Consensus       380 ~~~~~~~~~~~~~~~~  395 (399)
T TIGR00893       380 ALMVVAALALIGALSY  395 (399)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9998887777666553

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.38  E-value=1.7e-12  Score=126.15  Aligned_cols=147  Identities=15%  Similarity=0.081  Sum_probs=113.1

Q ss_pred             chhhhhhh-hccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHh--CChhHHHH
Q 013992           51 SGALLYIR-DDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAA--PNPGALIT  127 (432)
Q Consensus        51 ~~~~~~i~-~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~~  127 (432)
                      ...+|.+. +++|.+..+.   +++.+...++..++.++.|+++||+|||++++.+.++..+..++....  .+.+.+.+
T Consensus       295 ~~~lp~~l~~~~g~~~~~~---g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (496)
T PRK03893        295 QALLPTYLKTDLGYDPHTV---ANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGL  371 (496)
T ss_pred             HHHHHHHHHhhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence            44566665 5888888887   999999999999999999999999999999988877776665544433  23334444


Q ss_pred             HHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHHHH
Q 013992          128 GRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALL  201 (432)
Q Consensus       128 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~~~  201 (432)
                      ..++.+.......+....++.|.+|+++|++.+++......+|..++|.+++.+.+..+ |+..+...+....+
T Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g-~~~~~~~~~~~~~~  444 (496)
T PRK03893        372 LLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLD-LGTALASLSFSLTF  444 (496)
T ss_pred             HHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCC-hHHHHHHHHHHHHH
Confidence            44444433333455666789999999999999999999999999999999999999887 98887665543333

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.36  E-value=1.4e-11  Score=115.28  Aligned_cols=146  Identities=12%  Similarity=0.055  Sum_probs=120.2

Q ss_pred             hhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhh
Q 013992           53 ALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFV  132 (432)
Q Consensus        53 ~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~  132 (432)
                      ..|...+|.|.+..+.   +.+.+...++..+..++.|++.||+|+|+.+..+.+..+++.++.+..++.+.+++..++.
T Consensus       227 ~~~~~~~~~g~s~~~~---g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  303 (382)
T PRK11128        227 FSAIYWQAAGYSASTI---GYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILH  303 (382)
T ss_pred             HHHHHHHHCCCCHhHH---HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            3445556788887777   8888888889999999999999999999999999999999888888899999999999999


Q ss_pred             hccccchhhhHHHHHHhcCCcccchhHHHHHH-HHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHHHHHHH
Q 013992          133 GLGVGMASMTSPLYISEASPAKIRGALVSTNG-FLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFI  204 (432)
Q Consensus       133 G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~-~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~~~~~~  204 (432)
                      |++.+...+....++.+. +++++++..+..+ .....|..+|+.++|.+.|..+ + ..|+..+...++.++
T Consensus       304 g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g-~-~~~~~~~~~~~~~~~  373 (382)
T PRK11128        304 CGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLG-A-GVFWVMALVALPALF  373 (382)
T ss_pred             HHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-H-HHHHHHHHHHHHHHH
Confidence            999998888888888887 5556788888876 5567888999999999999887 6 455555555554433

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.35  E-value=1.6e-11  Score=119.17  Aligned_cols=164  Identities=16%  Similarity=0.125  Sum_probs=108.6

Q ss_pred             cchhhhhhhhccccchhhhH--------HHHH-HHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHhC
Q 013992           50 ISGALLYIRDDFKSVDRKTL--------LQES-IVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAP  120 (432)
Q Consensus        50 ~~~~~~~i~~~~~~~~~~~~--------~~~~-~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~  120 (432)
                      .....|.+.++.|.+..+..        .... ......++..++.++.++++||+|||++++.+..+.+++.++.++..
T Consensus       307 ~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~  386 (502)
T TIGR00887       307 VNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAY  386 (502)
T ss_pred             cccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence            33446777777776543210        0011 23334456667888999999999999999888888777766555431


Q ss_pred             ----ChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCC---------c
Q 013992          121 ----NPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPG---------T  187 (432)
Q Consensus       121 ----~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~---------~  187 (432)
                          +...+...-+...++.....+....+.+|.+|++.|+++.++.+....+|.++++.+.+.+.+..+         +
T Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  466 (502)
T TIGR00887       387 NHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIW  466 (502)
T ss_pred             HhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhcccccccccccccc
Confidence                111111111111222222345666778999999999999999999999999999999998887421         2


Q ss_pred             hHHHHHhhHHHHHHHHHHHhhcCCCH
Q 013992          188 WRWMLGVAGIPALLQFILMLLLPESP  213 (432)
Q Consensus       188 wr~~f~~~~~~~~~~~~~~~~~~e~~  213 (432)
                      +...|++.++.+++..+..+++||+.
T Consensus       467 ~~~~~~i~~~~~~~~~i~~~~lpEt~  492 (502)
T TIGR00887       467 MGHVLEIFALFMFLGILFTLLIPETK  492 (502)
T ss_pred             chHHHHHHHHHHHHHHHHheEeccCC
Confidence            45677777777776666667789983

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.34  E-value=6.4e-12  Score=118.66  Aligned_cols=138  Identities=21%  Similarity=0.226  Sum_probs=112.5

Q ss_pred             hhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHH-HHHHhCChhHHHHHHhhhh
Q 013992           55 LYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAV-IMAAAPNPGALITGRVFVG  133 (432)
Q Consensus        55 ~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~r~l~G  133 (432)
                      +++.+++|.+..+.   +++.+...++..++.++.|++.||+|||+.+..+..+..+..+ .....++.+.+.+..++.|
T Consensus       263 ~~~~~~~g~s~~~~---~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (405)
T TIGR00891       263 TYLKADLGLSPHTV---ANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQ  339 (405)
T ss_pred             HHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            34556788888777   8899999999999999999999999999999888776644333 3334566666777777777


Q ss_pred             ccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhh
Q 013992          134 LGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVA  195 (432)
Q Consensus       134 ~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~  195 (432)
                      +..+...+....++.|.+|+++|++++++.+....+|..++|++.+++.+..+.|+..+...
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~~  401 (405)
T TIGR00891       340 MLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALASL  401 (405)
T ss_pred             HHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHhh
Confidence            77777777788899999999999999999999999999999999999999877677766543

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=99.34  E-value=3.1e-10  Score=103.20  Aligned_cols=306  Identities=11%  Similarity=0.043  Sum_probs=187.5

Q ss_pred             HHHHHhhcccceeccccchhhhhhhhc-cccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHH
Q 013992           34 FSAGIGGLLFGYDTGVISGALLYIRDD-FKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVG  112 (432)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~  112 (432)
                      ..+|+..|+..+ +..-....|++.+. .|.+.++..  .-+.-...-.+....++...+.|..+.|++++.+.+...+.
T Consensus         8 ~llc~~gf~~~f-rPsEPfl~~yL~~~~kn~T~~qv~--~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t   84 (412)
T PF01770_consen    8 LLLCLFGFFKEF-RPSEPFLTPYLTGPDKNFTEEQVN--NEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIIT   84 (412)
T ss_pred             HHHHHHHHHHhc-CCCCccchHHHcCCccCCCHHHHH--HhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            344443344432 23344455666655 677777663  34555555667788889999999999999999999999999


Q ss_pred             HHHHHHhCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCC-chHHH
Q 013992          113 AVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPG-TWRWM  191 (432)
Q Consensus       113 ~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~-~wr~~  191 (432)
                      ..+.-+.++...+-+..++.|++.+. ..+-.+++-...|+++-.++.+...+...+|..++.+++..+....+ +.+..
T Consensus        85 ~~lll~~~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L  163 (412)
T PF01770_consen   85 WLLLLFGTSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQL  163 (412)
T ss_pred             HHHHHHHCcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence            99999999999999999999998874 66677888888888888999999999999999999999988877432 46677


Q ss_pred             HHhhHHHHHHHHHHHhhcCCCHHHHHHcCCHHHHHHHH-HHhCCCCchHHHHHHHHHH---hHHHHHHccCccchhHHHh
Q 013992          192 LGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAIL-RKVYPAHEVETEIRDLKES---VDKEIEEEGSSEKINLVKL  267 (432)
Q Consensus       192 f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  267 (432)
                      .++......++.+..+++|..++...-+++.++..... .+....++..+......+.   ........-..-..+.++.
T Consensus       164 ~~isl~~~~~a~~~~~fLP~~~~S~~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~  243 (412)
T PF01770_consen  164 NYISLASVSLALLIALFLPMPKRSLFFHRKPPAEQDANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSC  243 (412)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCcccceeccCccccccccccccccccccccccccccCcccccchHHHHHHHHHHHHHHH
Confidence            77766666666777788887665322222211111000 0000000000000000000   0000000001123455667


Q ss_pred             hcccchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHc--CCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhh
Q 013992          268 LKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLS--GFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLL  345 (432)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~  345 (432)
                      .++|.+++-.++..+.     .+++..+..|.-..-++.  .......-|..-....+.+.++.+..|++..++.+..-+
T Consensus       244 y~~~~ll~WSlWWa~a-----tcgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l  318 (412)
T PF01770_consen  244 YSNPRLLLWSLWWAFA-----TCGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGEL  318 (412)
T ss_pred             hcCchHHHHHHHHHHH-----HhHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHH
Confidence            7788776644444333     335555555554444444  222334455666666777788888889885555554333


Q ss_pred             HhH
Q 013992          346 VIS  348 (432)
Q Consensus       346 ~~~  348 (432)
                      .++
T Consensus       319 ~l~  321 (412)
T PF01770_consen  319 ALG  321 (412)
T ss_pred             HHH
Confidence            333

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.34  E-value=4.3e-12  Score=117.98  Aligned_cols=131  Identities=15%  Similarity=0.209  Sum_probs=116.2

Q ss_pred             hhhhhhhhc-cccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHhCC-hhHHHHHH
Q 013992           52 GALLYIRDD-FKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPN-PGALITGR  129 (432)
Q Consensus        52 ~~~~~i~~~-~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~r  129 (432)
                      ...|.+.++ +|.+..+.   +.+.+...++..++.++.+++.||+|||+.+..+..+.+++.++..+.++ .+.+.+..
T Consensus       232 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (365)
T TIGR00900       232 ALFPYVQSKYLGRGSTHY---GWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLW  308 (365)
T ss_pred             HHhHHHHHHHhCCchHHH---HHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHH
Confidence            456666655 78877777   88999999999999999999999999999999888888888888887774 88888899


Q ss_pred             hhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 013992          130 VFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAP  185 (432)
Q Consensus       130 ~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~  185 (432)
                      ++.|++.+...+...+++.|..|+++|++..++.+....+|..+++.+.+.+.+..
T Consensus       309 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~  364 (365)
T TIGR00900       309 FAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHL  364 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999999999999887653

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.33  E-value=4.4e-11  Score=113.45  Aligned_cols=162  Identities=21%  Similarity=0.253  Sum_probs=141.5

Q ss_pred             cccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccch--HHHHHHHHHHHHHHHHHHH-------
Q 013992           48 GVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRR--TSILVADFLFFVGAVIMAA-------  118 (432)
Q Consensus        48 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr--~~l~~~~~~~~~~~~~~~~-------  118 (432)
                      +++.....+..+++|.+..+.   ..+.-+..+...+|++++|++.||+|.|  ++++.+++++.+..+...+       
T Consensus       299 ti~~~~~i~a~~~lg~s~~~l---~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~  375 (477)
T PF11700_consen  299 TIISFAGIYATEVLGMSTTQL---IVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFF  375 (477)
T ss_pred             HHHHHHHHHHHHhcCcCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence            335555556677999998887   6666677778889999999999999999  8999998888777666665       


Q ss_pred             -hCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHH
Q 013992          119 -APNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGI  197 (432)
Q Consensus       119 -~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~  197 (432)
                       .++.+.+.+.-++.|++.|..++...++.+|..|+++.+..+|++....-....+||++.+.+.+..++-|+.+....+
T Consensus       376 g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~  455 (477)
T PF11700_consen  376 GLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLV  455 (477)
T ss_pred             CcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHH
Confidence             6788899999999999999999999999999999999999999999999999999999999999988889999999888


Q ss_pred             HHHHHHHHHhhcCCC
Q 013992          198 PALLQFILMLLLPES  212 (432)
Q Consensus       198 ~~~~~~~~~~~~~e~  212 (432)
                      +.++.++++++++++
T Consensus       456 lf~~gl~ll~~v~~~  470 (477)
T PF11700_consen  456 LFLIGLILLFFVDVE  470 (477)
T ss_pred             HHHHHHHHHhhccch
Confidence            888888888777654

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.33  E-value=1.2e-10  Score=112.33  Aligned_cols=156  Identities=14%  Similarity=0.152  Sum_probs=120.7

Q ss_pred             hhhhhhhccccchhhhHHHHHHHH-HHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHH---HHh-CChhHHHH
Q 013992           53 ALLYIRDDFKSVDRKTLLQESIVS-MAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIM---AAA-PNPGALIT  127 (432)
Q Consensus        53 ~~~~i~~~~~~~~~~~~~~~~~~s-~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~-~~~~~~~~  127 (432)
                      ..|++.+++|.+..+.   ++... ...++..++.++.|+++||+|+|+.+..+.++.+++.+..   +.. ++...+.+
T Consensus       245 ~~~~l~~~~G~s~~~~---g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~  321 (491)
T PRK11010        245 TTTFLIRGVGFDAGEV---GLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGA  321 (491)
T ss_pred             HHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence            3455566788888888   88874 5567999999999999999999998877666555544322   333 35555555


Q ss_pred             HHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHHHHHHHHHh
Q 013992          128 GRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILML  207 (432)
Q Consensus       128 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~  207 (432)
                      .-+++.++.+...+...++..+..+++.++...++.+....+|..+++.+.|++.+..+ |+..|.+.++.+++..+...
T Consensus       322 ~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G-~~~~f~~~~~~~l~~l~~~~  400 (491)
T PRK11010        322 AVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHG-WPTFYLFSVAAAVPGLLLLL  400 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHH
Confidence            56666666666667778889999999999999999999999999988889999999877 99999999988888877766


Q ss_pred             hcCCC
Q 013992          208 LLPES  212 (432)
Q Consensus       208 ~~~e~  212 (432)
                      .++++
T Consensus       401 ~~~~~  405 (491)
T PRK11010        401 VCRQT  405 (491)
T ss_pred             HHHhc
Confidence            65543

>TIGR00895 2A0115 benzoate transport

Probab=99.31  E-value=2e-11  Score=115.02  Aligned_cols=132  Identities=16%  Similarity=0.123  Sum_probs=107.9

Q ss_pred             ccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHhCChhHHH
Q 013992           47 TGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALI  126 (432)
Q Consensus        47 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~  126 (432)
                      ........|.+.+++|.+..+.   +...+...++..++.++.|++.||+|||+.+....+......++....++.+...
T Consensus       266 ~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (398)
T TIGR00895       266 VYFLTNWLPKLMVELGFSLSLA---ATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLL  342 (398)
T ss_pred             HHHHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHH
Confidence            3344556678888888887777   8889999999999999999999999999555444443333333333366777888


Q ss_pred             HHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhc
Q 013992          127 TGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAF  181 (432)
Q Consensus       127 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l  181 (432)
                      +..++.|++.+...+...+++.|.+|+++|++++++......+|..++|.+.+++
T Consensus       343 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       343 LLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            8889999999999999999999999999999999999999999999999999875

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.31  E-value=2e-11  Score=116.89  Aligned_cols=157  Identities=19%  Similarity=0.145  Sum_probs=106.6

Q ss_pred             ccchhhhhhhh-ccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccc--cchHHH-HHHHHHHHHHHHHHHH--hCCh
Q 013992           49 VISGALLYIRD-DFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRF--GRRTSI-LVADFLFFVGAVIMAA--APNP  122 (432)
Q Consensus        49 ~~~~~~~~i~~-~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~--Grr~~l-~~~~~~~~~~~~~~~~--~~~~  122 (432)
                      .....+|.+.+ +.|.+..+.   +.....+.++..++.++.|+++||+  |||+.. +....+..++.++...  ..+.
T Consensus       271 ~~~~~~P~~l~~~~g~s~~~~---~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~  347 (452)
T PRK11273        271 GILDWSPTYLKEVKHFALDKS---SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNP  347 (452)
T ss_pred             HHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccCh
Confidence            34456666554 467777666   7788888889999999999999999  555432 2222333333332222  2344


Q ss_pred             hHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHH-HHHHHHhhccCCCCchHHHHHhhHHHHHH
Q 013992          123 GALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQF-LSYLINLAFTRAPGTWRWMLGVAGIPALL  201 (432)
Q Consensus       123 ~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~-i~~~i~~~l~~~~~~wr~~f~~~~~~~~~  201 (432)
                      ....+..++.|.+..........+..|.+|+++|++++++.+....+|.. .+|.+.+.+.+..+ |+..|++.+..+++
T Consensus       348 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g-~~~~f~~~~~~~~~  426 (452)
T PRK11273        348 TVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSIL  426 (452)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhc-chHHHHHHHHHHHH
Confidence            44444555555543322233345678999999999999999888777765 47999999999887 99999988887777


Q ss_pred             HHHHHhhc
Q 013992          202 QFILMLLL  209 (432)
Q Consensus       202 ~~~~~~~~  209 (432)
                      ..+....+
T Consensus       427 ~~~~~~~~  434 (452)
T PRK11273        427 AVILLIVV  434 (452)
T ss_pred             HHHHHHHH
Confidence            76664433

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.30  E-value=1.3e-10  Score=108.36  Aligned_cols=161  Identities=16%  Similarity=0.110  Sum_probs=120.0

Q ss_pred             ccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHhC----Ch
Q 013992           47 TGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAP----NP  122 (432)
Q Consensus        47 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~----~~  122 (432)
                      ...+......+.++-|.+.++.   .+..........+..+++..+.||+|||+.++.+..++.+..++.....    ..
T Consensus       286 i~ai~~Yst~i~~~aG~~~~~a---~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~  362 (485)
T KOG0569|consen  286 INAIFFYSTSIFKTAGFTPEEA---QYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSF  362 (485)
T ss_pred             cceeHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444555566778888888888   7777888888899999999999999999999999999988887765431    11


Q ss_pred             --h---HHHHHHhhhhccccc-hhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhH
Q 013992          123 --G---ALITGRVFVGLGVGM-ASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAG  196 (432)
Q Consensus       123 --~---~~~~~r~l~G~~~~~-~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~  196 (432)
                        |   ..+++.++..++.+. ..|...-+.+|.+|++.|+.++++......+...+-...-..+.+..|+  +.|+...
T Consensus       363 ~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~--~~filF~  440 (485)
T KOG0569|consen  363 GSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP--YVFILFV  440 (485)
T ss_pred             hhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--hhhHHHH
Confidence              1   122333333332222 3577888999999999999999998888888887777766666666664  7777777


Q ss_pred             HHHHHHHHH-HhhcCCC
Q 013992          197 IPALLQFIL-MLLLPES  212 (432)
Q Consensus       197 ~~~~~~~~~-~~~~~e~  212 (432)
                      +++++..+. +..+|||
T Consensus       441 i~~~~~~i~~~~~lPET  457 (485)
T KOG0569|consen  441 IPLAIFLIYLYRYLPET  457 (485)
T ss_pred             HHHHHHHHHHHHhCccc
Confidence            777666555 8889999

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.30  E-value=3.5e-11  Score=113.29  Aligned_cols=133  Identities=12%  Similarity=0.102  Sum_probs=114.7

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhhccccchhhhHHHHHHhcC
Q 013992           72 ESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEAS  151 (432)
Q Consensus        72 ~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~  151 (432)
                      +.+.+...+...++.++.|++.||+|||+.+.++.++.++...+...++|.+.+++.+++.|++..........+..+..
T Consensus       257 g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~  336 (396)
T TIGR00882       257 GYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQF  336 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            88888888888999999999999999999999999999998888788899999999999999987766666667788888


Q ss_pred             CcccchhHHHH-HHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHHHHHHHH
Q 013992          152 PAKIRGALVST-NGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFIL  205 (432)
Q Consensus       152 ~~~~R~~~~~~-~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~~~~~~~  205 (432)
                      +++.|+...+. .+....+|..+++.+++++.+..+ |+..|.+.++..++..+.
T Consensus       337 ~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G-~~~~f~~~~~~~~i~~~~  390 (396)
T TIGR00882       337 DVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIG-FQGAYLVLGCIVLLFTLI  390 (396)
T ss_pred             CcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcc-cHHHHHHHHHHHHHHHHH
Confidence            88888776665 667889999999999999999877 999999988877666554

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.30  E-value=3.1e-11  Score=115.29  Aligned_cols=115  Identities=18%  Similarity=0.249  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHh-CChhHHHHHHhhhhccccchhhhHHHHHHhc
Q 013992           72 ESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAA-PNPGALITGRVFVGLGVGMASMTSPLYISEA  150 (432)
Q Consensus        72 ~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~  150 (432)
                      +++.+...++..++.+++++++||+|+|+++..+..+..++.++..+. ++.+.+.+..++.|++.+...+...++++|.
T Consensus       260 ~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  339 (437)
T TIGR00792       260 SYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADT  339 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            667777889999999999999999999999999998888887777665 4566777788889999998888888999888


Q ss_pred             CC-------cccchhHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 013992          151 SP-------AKIRGALVSTNGFLITSGQFLSYLINLAFTRAPG  186 (432)
Q Consensus       151 ~~-------~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~  186 (432)
                      .+       ++++|.+.++.+....+|..+++.+.+.+.+..+
T Consensus       340 ~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G  382 (437)
T TIGR00792       340 VDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIG  382 (437)
T ss_pred             hhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            65       4557999999999999999999999998876543

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK10504 putative transporter; Provisional

Probab=99.29  E-value=3.2e-11  Score=116.37  Aligned_cols=135  Identities=10%  Similarity=-0.023  Sum_probs=109.0

Q ss_pred             cccchhhhhhhh-ccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHh---CChh
Q 013992           48 GVISGALLYIRD-DFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAA---PNPG  123 (432)
Q Consensus        48 ~~~~~~~~~i~~-~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~~~~  123 (432)
                      .......|++.+ .+|.+..+.   +++.....++..++.++.|++.||+|||+++..+..+..++..+..+.   ++.+
T Consensus       278 ~~~~~~~~~~~~~~~g~~~~~~---g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (471)
T PRK10504        278 GMLPFMTPVFLQIGLGFSPFHA---GLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYY  354 (471)
T ss_pred             HHHHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHH
Confidence            334455666555 477777666   888888888888888999999999999999999988888877766553   3344


Q ss_pred             HHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 013992          124 ALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAP  185 (432)
Q Consensus       124 ~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~  185 (432)
                      .+.+..++.|++.+...+....++.+..|+++|+.+.++.+....+|..+|+.+.+.+.+..
T Consensus       355 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~  416 (471)
T PRK10504        355 LLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLF  416 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44556778888888888888899999999999999999999999999999999998876644

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.28  E-value=9.8e-11  Score=111.46  Aligned_cols=137  Identities=15%  Similarity=0.150  Sum_probs=101.5

Q ss_pred             chhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHhCChhHHHHHHh
Q 013992           51 SGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRV  130 (432)
Q Consensus        51 ~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~  130 (432)
                      ...+|.+.++.|.+..+.   +...+...++..++.++.|++.||+|||+.+..+.++..+..+.....++.....+.-+
T Consensus       251 ~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (426)
T PRK12307        251 FGLLPTYLAGEGFDTGVV---SNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGAC  327 (426)
T ss_pred             HHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHH
Confidence            345666666777776666   88888889999999999999999999999998888777666555444332222222222


Q ss_pred             hhhc--cccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHH
Q 013992          131 FVGL--GVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWM  191 (432)
Q Consensus       131 l~G~--~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~  191 (432)
                      +.|+  +.....+....++.|.+|+++|++++|+......+|..++|.+.+++.+..+ +...
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g-~~~~  389 (426)
T PRK12307        328 LFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMG-LGAA  389 (426)
T ss_pred             HHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHccc-HHHH
Confidence            3332  2233345556778999999999999999999999999999999999998776 5543

>TIGR00898 2A0119 cation transport protein

Probab=99.26  E-value=4.9e-11  Score=116.13  Aligned_cols=134  Identities=23%  Similarity=0.192  Sum_probs=109.7

Q ss_pred             HHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHhCCh--hHHHHHHhhhhccccchhhhHHHHHHhcCCc
Q 013992           76 SMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNP--GALITGRVFVGLGVGMASMTSPLYISEASPA  153 (432)
Q Consensus        76 s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~  153 (432)
                      ....+...++.++.+++.||+|||+.+..+.++.+++.++..+.++.  +...+..++.+++.+...+....+..|.+|+
T Consensus       362 ~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~  441 (505)
T TIGR00898       362 FISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPT  441 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccH
Confidence            34456677888899999999999999999999999988888777654  4455556666777777788888999999999


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHHHHHHHHHhhcCCC
Q 013992          154 KIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLLLPES  212 (432)
Q Consensus       154 ~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~  212 (432)
                      +.|+.++++.+....+|.+++|.+.+ +.+.  ++...+++.+...++..+..+++||+
T Consensus       442 ~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~lpet  497 (505)
T TIGR00898       442 VVRNLGVGVCSTMARVGSIISPFLVY-LGEK--WLFLPLVLFGGLALLAGILTLFLPET  497 (505)
T ss_pred             HHHhhhHhHHHHHHHHHHHHHhHHHH-HHHH--HHhhHHHHHHHHHHHHHHHHHcCcCC
Confidence            99999999999999999999999988 4433  36677778787777777777788987

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.24  E-value=8.1e-11  Score=112.88  Aligned_cols=152  Identities=20%  Similarity=0.234  Sum_probs=134.2

Q ss_pred             cchhhhhhh-hccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHhCChhHHHHH
Q 013992           50 ISGALLYIR-DDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITG  128 (432)
Q Consensus        50 ~~~~~~~i~-~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (432)
                      +...+|.+. +++|.+....   |++.+.+.+|..++.++.+++.+|+++++.+..+.++++++.+..+++++.+...+.
T Consensus       237 ~~aLlPl~a~~~l~~~a~~y---Gll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~  313 (524)
T PF05977_consen  237 VWALLPLFARDVLGGGASGY---GLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIA  313 (524)
T ss_pred             HHHhhhHHHHHHhCCcHHHH---HHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence            345577765 4577777777   999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHHHHHHHH
Q 013992          129 RVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFIL  205 (432)
Q Consensus       129 r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~~~~~~~  205 (432)
                      .++.|++.........+.+.+..|++.|||.++++......+..+|..+.|.+.+..+ -+..+.+.++..++..++
T Consensus       314 l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g-~~~al~~a~~~lll~~~~  389 (524)
T PF05977_consen  314 LFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFG-VRTALLIAGAALLLSALI  389 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHH
Confidence            9999999988888888999999999999999999999999999999999999999887 888888777655554444

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.24  E-value=6.6e-11  Score=112.70  Aligned_cols=156  Identities=21%  Similarity=0.151  Sum_probs=106.1

Q ss_pred             cccchhhhhhh-hccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccc--cch-HHHHHHHHHHHHHHHHHH--HhCC
Q 013992           48 GVISGALLYIR-DDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRF--GRR-TSILVADFLFFVGAVIMA--AAPN  121 (432)
Q Consensus        48 ~~~~~~~~~i~-~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~--Grr-~~l~~~~~~~~~~~~~~~--~~~~  121 (432)
                      ......+|.+. +++|.+..+.   +...+.+.++..++.++.|+++||+  ++| +......+...+......  ...+
T Consensus       260 ~~~~~~~p~~l~~~~g~s~~~a---~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~  336 (434)
T PRK11663        260 AAINDWGNLYMSETLGVDLVTA---NSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFAS  336 (434)
T ss_pred             HHHHHHHHHHHHhccCCCHHHH---HHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHccccc
Confidence            33444555554 6678888877   8888999999999999999999999  333 322221111111111111  1223


Q ss_pred             hhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHHHH
Q 013992          122 PGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALL  201 (432)
Q Consensus       122 ~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~~~  201 (432)
                      .....+..+..|++.............|.+|+++|++++++.+....+|..++|.+.+++.+..+ |+..|++.++..++
T Consensus       337 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g-~~~~f~~~~~~~~~  415 (434)
T PRK11663        337 YVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWH-WTGFFVVISIAAGI  415 (434)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcc-cHHHHHHHHHHHHH
Confidence            33333344444543322222334567899999999999999999999999999999999999887 99999998887777


Q ss_pred             HHHHHh
Q 013992          202 QFILML  207 (432)
Q Consensus       202 ~~~~~~  207 (432)
                      ..+..+
T Consensus       416 ~~~~~~  421 (434)
T PRK11663        416 SALLLL  421 (434)
T ss_pred             HHHHHH
Confidence            665543

>PRK10054 putative transporter; Provisional

Probab=99.23  E-value=8.8e-11  Score=110.30  Aligned_cols=140  Identities=11%  Similarity=0.073  Sum_probs=112.0

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHh-CChhHHHHHHhhhhccccchhhhHHHHHHhc
Q 013992           72 ESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAA-PNPGALITGRVFVGLGVGMASMTSPLYISEA  150 (432)
Q Consensus        72 ~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~  150 (432)
                      +.+.+.+.+.....+++.|++.||+++|+.+..+..+..++.....+. ++.+.+++..++.|++.+...|....++.+.
T Consensus       247 g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~  326 (395)
T PRK10054        247 AVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHI  326 (395)
T ss_pred             HHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence            777777777777888899999999999999999988888888777664 5677777888999999988888888899999


Q ss_pred             CCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHHHHHHHH-HhhcCCCH
Q 013992          151 SPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFIL-MLLLPESP  213 (432)
Q Consensus       151 ~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~~  213 (432)
                      .|++.|+++.+..+ ...+|..+||.+++.+.|+.+ ....|++.+....+..++ ....+|+|
T Consensus       327 ~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (395)
T PRK10054        327 APPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLP-PWSLFVILALAIVAAWLLMLKGMRARP  388 (395)
T ss_pred             CCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcC-hhhHHHHHHHHHHHHHHHHHhccccCc
Confidence            99999999988655 455899999999999999887 777777766555444444 33344443

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.23  E-value=1.7e-10  Score=109.91  Aligned_cols=157  Identities=18%  Similarity=0.119  Sum_probs=99.3

Q ss_pred             chhhhhh-hhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHH--H--hCChhHH
Q 013992           51 SGALLYI-RDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMA--A--APNPGAL  125 (432)
Q Consensus        51 ~~~~~~i-~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~--~--~~~~~~~  125 (432)
                      ...+|.+ .+++|.+..+.   +...++..++..+++++.|+++||+|||+.++.+.++..+......  .  .++....
T Consensus       263 ~~~lp~~l~~~~g~s~~~~---~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (432)
T PRK10406        263 TTYMQKYLVNTAGMHANVA---SGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAA  339 (432)
T ss_pred             HHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence            3445554 45678777666   7777887788888899999999999999988776665443332221  1  2233322


Q ss_pred             HHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHH-HHHHHHHHHhhccCCCCchHHHHHhhHHHHHHHHH
Q 013992          126 ITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITS-GQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFI  204 (432)
Q Consensus       126 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~-g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~~~~~~  204 (432)
                      +..-.+.+++.+...+....++.|++|++.|+.++|+.+....+ .....|.+.+.+.. .+.|...+++.++..++..+
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~-~g~~~~~~~~~~~~~~i~~~  418 (432)
T PRK10406        340 FGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKS-IGMETAFFWYVTLMAVVAFL  418 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHHH
Confidence            22222222333334455667889999999999999997755443 33347777776543 34476677766666666665


Q ss_pred             HHhhcCC
Q 013992          205 LMLLLPE  211 (432)
Q Consensus       205 ~~~~~~e  211 (432)
                      ..+++++
T Consensus       419 ~~~~l~~  425 (432)
T PRK10406        419 VSLMLHR  425 (432)
T ss_pred             HHHHhhh
Confidence            5555443

>PRK15075 citrate-proton symporter; Provisional

Probab=99.23  E-value=2.2e-10  Score=109.21  Aligned_cols=135  Identities=18%  Similarity=0.168  Sum_probs=96.9

Q ss_pred             ccchhhhhhhh-ccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHH-H---HHhCChh
Q 013992           49 VISGALLYIRD-DFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVI-M---AAAPNPG  123 (432)
Q Consensus        49 ~~~~~~~~i~~-~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~-~---~~~~~~~  123 (432)
                      ......|.+.+ .+|.+..+.   ++....+.++..++.++.|+++||+|||++++.+..+..+.... .   ...+++.
T Consensus       256 ~~~~~~p~~l~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (434)
T PRK15075        256 LITVYTPTFGKTVLHLSAADS---LLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFA  332 (434)
T ss_pred             HHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchH
Confidence            34455666554 478877776   77888888889999999999999999999988765544332211 1   1223444


Q ss_pred             HHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHH-HHHHHHHHHHHHHHhhccCCCC
Q 013992          124 ALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNG-FLITSGQFLSYLINLAFTRAPG  186 (432)
Q Consensus       124 ~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~-~~~~~g~~i~~~i~~~l~~~~~  186 (432)
                      ...+...+.|++.+...+....++.|.+|+++|+.+.++.. .+..++..++|.+.+++.+..+
T Consensus       333 ~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g  396 (434)
T PRK15075        333 RMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTG  396 (434)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcC
Confidence            44444556666666666667788999999999999999854 4444557789999999988766

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.22  E-value=6.6e-11  Score=112.91  Aligned_cols=176  Identities=16%  Similarity=0.146  Sum_probs=158.0

Q ss_pred             HHHHHHHhhcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhcccc--chHHHHHHHHHH
Q 013992           32 LAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFG--RRTSILVADFLF  109 (432)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G--rr~~l~~~~~~~  109 (432)
                      .+....+...+..+........+|...++.+.++.+.   +.+.++..+...++.+..|.++|+..  ++.+..++.+..
T Consensus       299 ~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~a---a~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~  375 (509)
T KOG2504|consen  299 KFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDA---AFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIA  375 (509)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhh---HHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHH
Confidence            4555556666667777777888899999999999888   99999999999999999999999998  556778888899


Q ss_pred             HHHHHHHHHhCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchH
Q 013992          110 FVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWR  189 (432)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr  189 (432)
                      +++.+.+.+.++++.++..-.+.|++.|.........+.|..+.++-+.+.|+.....+++..+||++.+++.|..++|.
T Consensus       376 gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~  455 (509)
T KOG2504|consen  376 GLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYD  455 (509)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCee
Confidence            99999999999999999999999999999988888899999999999999999999999999999999999999988899


Q ss_pred             HHHHhhHHHHHHHHHHHhhcC
Q 013992          190 WMLGVAGIPALLQFILMLLLP  210 (432)
Q Consensus       190 ~~f~~~~~~~~~~~~~~~~~~  210 (432)
                      ..|+..++..++....++..+
T Consensus       456 ~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  456 HAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             eehhhcChHHHHHHHHHHHhH
Confidence            999999998888887777766

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=99.22  E-value=5e-10  Score=95.91  Aligned_cols=177  Identities=17%  Similarity=0.127  Sum_probs=133.3

Q ss_pred             HHHHHHHHHHhhcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHH
Q 013992           29 VLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFL  108 (432)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~  108 (432)
                      ||..+......+...+ ....++..-|++.+.+|.+..+.   ..+.+.-.+|..+ .++.|.+.||+|+|.++.+|.+.
T Consensus         1 rW~~l~a~~~v~~~~G-t~Y~Fs~yS~~Lk~~l~~sq~~l---~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~   75 (250)
T PF06813_consen    1 RWLSLVASIWVQLCSG-TTYTFSAYSPQLKSRLGYSQSQL---NTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVL   75 (250)
T ss_pred             ChhhHHHHHHHHHhcC-cccchhhhhHHHHHHhCCCHHHH---HHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHH
Confidence            3555555555555554 44557788899999999999998   8888888888876 48899999999999999999999


Q ss_pred             HHHHHHHHHHh-------CChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhc
Q 013992          109 FFVGAVIMAAA-------PNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAF  181 (432)
Q Consensus       109 ~~~~~~~~~~~-------~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l  181 (432)
                      ..+|..+...+       .++|.+.+..++.|.+.+.....+.....+.||. +||.+.++.-...+++..+-..+...+
T Consensus        76 ~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~  154 (250)
T PF06813_consen   76 GFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAF  154 (250)
T ss_pred             HHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHH
Confidence            99998876542       3677888788888888777777777777889985 699999999999999888777766666


Q ss_pred             cCCCCchHHHHHhhHHHHHHHHHHHhhcCCC
Q 013992          182 TRAPGTWRWMLGVAGIPALLQFILMLLLPES  212 (432)
Q Consensus       182 ~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~  212 (432)
                      .+... -+..+.....+.++.++..+++++.
T Consensus       155 f~~~~-~~fll~la~~~~~v~l~~~~~vr~~  184 (250)
T PF06813_consen  155 FGDDP-SSFLLFLAVLPAVVCLVAMFFVRPV  184 (250)
T ss_pred             cCCCh-HHHHHHHHHHHHHHHHHHhhheecc
Confidence            55532 4555444445555555555555444

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.21  E-value=1.3e-10  Score=109.19  Aligned_cols=148  Identities=16%  Similarity=0.073  Sum_probs=111.4

Q ss_pred             hhhhhhccccchhhhHHHHHHHHHHH-HHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHH------hCChhHHH
Q 013992           54 LLYIRDDFKSVDRKTLLQESIVSMAV-AGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAA------APNPGALI  126 (432)
Q Consensus        54 ~~~i~~~~~~~~~~~~~~~~~~s~~~-~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~------~~~~~~~~  126 (432)
                      .+.+.+|.|.+.++.   +++..... ....++.++.|++.||+|+|+.+..+..+.++..+....      .++.....
T Consensus       231 ~~~~l~~~G~s~~~i---g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (390)
T TIGR02718       231 SKLYLVDAGWPLEWI---GRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAW  307 (390)
T ss_pred             hhHHHHhcCCCHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHH
Confidence            345556688888887   88877765 466677899999999999999998877666443332221      12334444


Q ss_pred             HHHhhhhccccchhhhHHHHHHhcCCc-ccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHHHHHHHH
Q 013992          127 TGRVFVGLGVGMASMTSPLYISEASPA-KIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFIL  205 (432)
Q Consensus       127 ~~r~l~G~~~~~~~~~~~~~i~~~~~~-~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~~~~~~~  205 (432)
                      ....+.+++.+...+.......+..++ ++|++.++..+....+|..++|.+++.+.+..+ |+..|+..++..++..+.
T Consensus       308 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G-~~~~f~~~~~~~l~a~~~  386 (390)
T TIGR02718       308 SCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFG-YAGGFLSGTVLAVLAILL  386 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHHHHHH
Confidence            555666677777777777787777776 788999999999999999999999999998877 999998887766665443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR01272 gluP glucose/galactose transporter

Probab=99.21  E-value=3.7e-10  Score=101.97  Aligned_cols=130  Identities=13%  Similarity=0.041  Sum_probs=105.6

Q ss_pred             cccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhhccccchh
Q 013992           61 FKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMAS  140 (432)
Q Consensus        61 ~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~  140 (432)
                      +|.++.+.   +...+.+..+..++.++.+++.||+|+|+++..+..+..++.++....++... ...-++.|++.+..+
T Consensus       173 ~g~s~~~a---~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~-~~~~~l~g~~~s~i~  248 (310)
T TIGR01272       173 LGLPEDQA---AHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVA-MWFVLALGLFNSIMF  248 (310)
T ss_pred             CCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHH
Confidence            68888888   99999999999999999999999999999998888888887766666555433 345668899999999


Q ss_pred             hhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHH
Q 013992          141 MTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGI  197 (432)
Q Consensus       141 ~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~  197 (432)
                      |...+...+..|++ .+.+.++. ....+|..+.|.+.|.+.|..+ .+..|++..+
T Consensus       249 P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g-~~~a~~v~~~  302 (310)
T TIGR01272       249 PTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLG-IQLAFALPVP  302 (310)
T ss_pred             HHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhcc-chHHHHHHHH
Confidence            99999998988765 45566665 4566899999999999999776 7888774443

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.20  E-value=4.6e-10  Score=101.69  Aligned_cols=157  Identities=16%  Similarity=0.127  Sum_probs=128.7

Q ss_pred             ccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHh-CChhHH
Q 013992           47 TGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAA-PNPGAL  125 (432)
Q Consensus        47 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~~  125 (432)
                      ...++.+-|.+.+..|.+.+..   +++.-.+.++..+|..+.|+++|| +.|+.+.....+..+..+...+. ++.+..
T Consensus       228 F~~ftYi~P~L~~v~g~s~~~v---s~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~  303 (394)
T COG2814         228 FALYTYIRPFLESVAGFSVSAV---SLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALA  303 (394)
T ss_pred             hhhHHhHHHHHHHccCCCHhHH---HHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence            4456677788888889988888   999999999999999999999999 99999999888888777776665 455566


Q ss_pred             HHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHHHHHHHH
Q 013992          126 ITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFIL  205 (432)
Q Consensus       126 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~~~~~~~  205 (432)
                      ++.-++.|+..+........-+++ .-++.+..+.+++....++|..+|..+++.+.++.+ +....++.++..++..++
T Consensus       304 ~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g-~~~~~~~~a~l~~~a~~~  381 (394)
T COG2814         304 LALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALG-YAATGWVGAALLLLALLL  381 (394)
T ss_pred             HHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-hHHHHHHHHHHHHHHHHH
Confidence            666677777766655555555666 335679999999999999999999999999999977 999999999888887777


Q ss_pred             Hhhc
Q 013992          206 MLLL  209 (432)
Q Consensus       206 ~~~~  209 (432)
                      .+..
T Consensus       382 ~~~~  385 (394)
T COG2814         382 ALLS  385 (394)
T ss_pred             HHHH
Confidence            5443

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.19  E-value=2.1e-10  Score=102.92  Aligned_cols=176  Identities=17%  Similarity=0.215  Sum_probs=148.3

Q ss_pred             HHHHHHhhcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHH
Q 013992           33 AFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVG  112 (432)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~  112 (432)
                      .+++.-..+.++.+. .++....+-..++|++..+.   .++.....+..+++++++|+|.||+|.|+++..+++++.+.
T Consensus       256 ~FLiA~~~~~DGv~t-il~~~~~fg~~~~gls~~~l---ll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~  331 (438)
T COG2270         256 LFLIARFFYIDGVNT-ILAMGGVFGAADLGLSSTEL---LLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIA  331 (438)
T ss_pred             HHHHHHHHHHhhHHH-HHHHHHHHHHHHcCccHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHH
Confidence            333334444555433 23334444556899999888   77777777888899999999999999999999999999999


Q ss_pred             HHHHHHhCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHH
Q 013992          113 AVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWML  192 (432)
Q Consensus       113 ~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f  192 (432)
                      ++..-+...-..+.++-.+.|.+.|..+..+.++..+..|+++-++.+|+++...-.....||.+-+.+.+..++-|..+
T Consensus       332 ~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~  411 (438)
T COG2270         332 ALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGV  411 (438)
T ss_pred             HHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHH
Confidence            99888888877788888999999999999999999999999999999999999999999999999999999888899998


Q ss_pred             HhhHHHHHHHHHHHhhcCCC
Q 013992          193 GVAGIPALLQFILMLLLPES  212 (432)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~e~  212 (432)
                      ....++..+..++++.+|+.
T Consensus       412 ~~i~vll~iGl~~L~~v~~~  431 (438)
T COG2270         412 LSIIVLLLIGLLLLLRVKVP  431 (438)
T ss_pred             HHHHHHHHhhHhhEEeecCC
Confidence            88888888888887877765

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.18  E-value=3.3e-10  Score=105.47  Aligned_cols=169  Identities=18%  Similarity=0.212  Sum_probs=129.7

Q ss_pred             cccceeccccchhhhhhhhccc-cchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHh
Q 013992           41 LLFGYDTGVISGALLYIRDDFK-SVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAA  119 (432)
Q Consensus        41 ~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~  119 (432)
                      ++.+.....+....+...++.| .+....   +.+.+...++-.+.-.+.+++..|+|.|+++.++.+.+.+=..+.+..
T Consensus       217 ~l~~~~~~~~~~f~~~yl~~~gg~~~~~~---g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~  293 (400)
T PF03825_consen  217 FLIGISHAAYYTFFSIYLQELGGYSGSTI---GILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYF  293 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcccchhhHH---HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444444445555566667776 444555   667777778888888999999999999999999999999988888887


Q ss_pred             -CChhHHHHH----HhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHH-HHHHHHHHHHHHHhhccCCCC-----ch
Q 013992          120 -PNPGALITG----RVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGF-LITSGQFLSYLINLAFTRAPG-----TW  188 (432)
Q Consensus       120 -~~~~~~~~~----r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~-~~~~g~~i~~~i~~~l~~~~~-----~w  188 (432)
                       ++.+...+.    ..++|+..+........++.+..|++.|+++.++++. ..++|..+|..++|++.+..+     .|
T Consensus       294 ~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~  373 (400)
T PF03825_consen  294 SDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDW  373 (400)
T ss_pred             cCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhH
Confidence             555443333    4569999999999999999999999999999999876 478999999999999998754     25


Q ss_pred             HHHHHhhHHHHHHHHHH-HhhcCCC
Q 013992          189 RWMLGVAGIPALLQFIL-MLLLPES  212 (432)
Q Consensus       189 r~~f~~~~~~~~~~~~~-~~~~~e~  212 (432)
                      ...+.+.+...++..++ +++++|+
T Consensus       374 ~~~~~v~a~~~~~~~~~f~~~fk~~  398 (400)
T PF03825_consen  374 SAVFLVFAVMALVILVLFVILFKPK  398 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccCC
Confidence            56666666666555555 4555554

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.18  E-value=4.8e-11  Score=114.78  Aligned_cols=150  Identities=16%  Similarity=0.123  Sum_probs=103.6

Q ss_pred             hhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccch-------HHHHHHHHHHHHHHHHHHHhCChhHHHH
Q 013992           55 LYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRR-------TSILVADFLFFVGAVIMAAAPNPGALIT  127 (432)
Q Consensus        55 ~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr-------~~l~~~~~~~~~~~~~~~~~~~~~~~~~  127 (432)
                      +++.+++|.+..+.   +.+.+++.++..++.++.|+++||+|||       .......++.++..++....++.+...+
T Consensus       277 ~~l~~~~g~s~~~a---~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~  353 (476)
T PLN00028        277 EYFYDRFGLSLETA---GAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIV  353 (476)
T ss_pred             HHHHHhcCCCHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHH
Confidence            34456788888887   8899999999999999999999999875       2333333344444444455566655555


Q ss_pred             HHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHHHHHHHHHh
Q 013992          128 GRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILML  207 (432)
Q Consensus       128 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~  207 (432)
                      .-++.+++.+...+...+++.+..| ++|+...++...+..+|..+++.+.+ ..+. ++|+..|++.+++.++..++.+
T Consensus       354 ~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~-~~y~~~f~~~~~~~~i~~~~~~  430 (476)
T PLN00028        354 VMILFSIFVQAACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF-TGSS-YSTETGISLMGVMIIACTLPVA  430 (476)
T ss_pred             HHHHHHHHHHHhhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHH-hcCC-ccHhhHHHHHHHHHHHHHHHHH
Confidence            5566666555555555556666654 67999999987777777777776543 1122 2499999999888877777766


Q ss_pred             hcC
Q 013992          208 LLP  210 (432)
Q Consensus       208 ~~~  210 (432)
                      +++
T Consensus       431 ~~~  433 (476)
T PLN00028        431 FIH  433 (476)
T ss_pred             hee
Confidence            664

>TIGR00896 CynX cyanate transporter

Probab=99.17  E-value=2.2e-10  Score=106.21  Aligned_cols=136  Identities=21%  Similarity=0.137  Sum_probs=107.1

Q ss_pred             cchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccc-cchHHHHHHHHHHHHHHHHHHHhCChhHHHHH
Q 013992           50 ISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRF-GRRTSILVADFLFFVGAVIMAAAPNPGALITG  128 (432)
Q Consensus        50 ~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (432)
                      ....+|.+.++.|.+..+.   +.+.+...++..+++++.|++.||+ +||+.+..+..+..++.+...+.++..... .
T Consensus       216 ~~~~lp~~~~~~g~~~~~~---g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  291 (355)
T TIGR00896       216 LIGWLPAILISHGASAATA---GSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-W  291 (355)
T ss_pred             HHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-H
Confidence            3445677777788877777   8999999999999999999999999 567777788888888777777665543332 4


Q ss_pred             HhhhhccccchhhhHHHHHHhcCC-cccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchH
Q 013992          129 RVFVGLGVGMASMTSPLYISEASP-AKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWR  189 (432)
Q Consensus       129 r~l~G~~~~~~~~~~~~~i~~~~~-~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr  189 (432)
                      -++.|++.+...+...+.+.+..+ +++++...++.+....+|..++|.+.+++.++.++|.
T Consensus       292 ~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~~~  353 (355)
T TIGR00896       292 ALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGNWL  353 (355)
T ss_pred             HHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            567899999888887777766555 5667888898888888899999999999998776554

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.16  E-value=4.5e-10  Score=105.17  Aligned_cols=151  Identities=13%  Similarity=0.128  Sum_probs=110.1

Q ss_pred             hhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHH-HhCChhHHHHHHhh
Q 013992           53 ALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMA-AAPNPGALITGRVF  131 (432)
Q Consensus        53 ~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~r~l  131 (432)
                      ..|.+.+.+|.+..+.   +++.+...++..++.++.|++.||+|+|+.+..+..+.+++.++.. ..++.+...+..++
T Consensus       222 ~~~~~~~~~g~s~~~~---~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  298 (382)
T PRK10091        222 IKPYMMFISGFSETSM---TFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFI  298 (382)
T ss_pred             HHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            3455666678887777   8999999999999999999999999999999998888888776554 35555666666666


Q ss_pred             hhccccchhhhHHH-HHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHHHHHHHHHhh
Q 013992          132 VGLGVGMASMTSPL-YISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLL  208 (432)
Q Consensus       132 ~G~~~~~~~~~~~~-~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~  208 (432)
                      .+++.....+.... ...+..+++.++...  ......+|..+||.+++++.+..++|++.+.+.++.+++.......
T Consensus       299 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (382)
T PRK10091        299 CCAGLFALSAPLQILLLQNAKGGELLGAAG--GQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLL  374 (382)
T ss_pred             HHHHHHhhhHHHHHHHHHhCCcchHHHHHH--HHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHH
Confidence            66655444444333 344444445455443  3567789999999999999986545999999988776666555333

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.15  E-value=1.7e-10  Score=109.03  Aligned_cols=154  Identities=14%  Similarity=0.050  Sum_probs=104.8

Q ss_pred             cceeccccchhhhhhhhcc--ccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHH-HHHHHHHHHHHHHHHHHh
Q 013992           43 FGYDTGVISGALLYIRDDF--KSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTS-ILVADFLFFVGAVIMAAA  119 (432)
Q Consensus        43 ~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~-l~~~~~~~~~~~~~~~~~  119 (432)
                      .......+...+|.+.+++  +.+..+.   +...+...++..++.++.|+++||++||+. .....++.+++..+....
T Consensus       254 ~~~~~~~~~~~~p~~l~~~~~~~s~~~~---~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~  330 (412)
T TIGR02332       254 LTNTLSAINIWTPQILQSFNQGSSNIMI---GLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLASAT  330 (412)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCcHHHh---HHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHhc
Confidence            3333444556777777765  4455556   888899999999999999999999997774 344444444443332223


Q ss_pred             CChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHH
Q 013992          120 PNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPA  199 (432)
Q Consensus       120 ~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~  199 (432)
                      .+....+++-.+.+++.....+.......|.+|+++|++++|+.+....+|.+++|.+.+.+.+..++|++.|++.++..
T Consensus       331 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~~  410 (412)
T TIGR02332       331 DHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAALL  410 (412)
T ss_pred             CCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHHH
Confidence            33222222222333333223333444557789999999999999999999999999999999998767999988766543

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.15  E-value=1.3e-10  Score=110.87  Aligned_cols=158  Identities=16%  Similarity=0.107  Sum_probs=103.6

Q ss_pred             chhhhhhhh-ccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHH---HHHHHHHHh--CChhH
Q 013992           51 SGALLYIRD-DFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFF---VGAVIMAAA--PNPGA  124 (432)
Q Consensus        51 ~~~~~~i~~-~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~---~~~~~~~~~--~~~~~  124 (432)
                      ....|.+.+ +.|.+..+.   ++....+.++..++.++.|+++||+++|+....+.....   ++.+.....  .+.+.
T Consensus       271 ~~~~p~~l~~~~g~s~~~~---~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (438)
T TIGR00712       271 LDWSPTYLKEVKHFALDKS---SWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLV  347 (438)
T ss_pred             HHhHHHHHHHccCCChhhH---HHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHH
Confidence            344555544 467777777   888888889999999999999999975432222322221   111222221  23333


Q ss_pred             HHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHH-HHHHHHHHhhccCCCCchHHHHHhhHHHHHHHH
Q 013992          125 LITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSG-QFLSYLINLAFTRAPGTWRWMLGVAGIPALLQF  203 (432)
Q Consensus       125 ~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g-~~i~~~i~~~l~~~~~~wr~~f~~~~~~~~~~~  203 (432)
                      .....+..|++.............|.+|+++|+.+.|+.+....+| ..++|.+.+.+.+..+ |...|++.+...++..
T Consensus       348 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g-~~~~~~~~~~~~~~~~  426 (438)
T TIGR00712       348 DMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAV  426 (438)
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhcc-chHHHHHHHHHHHHHH
Confidence            3334444554332222222345789999999999999998777766 5789999999999877 9999988777666665


Q ss_pred             HH-HhhcCCC
Q 013992          204 IL-MLLLPES  212 (432)
Q Consensus       204 ~~-~~~~~e~  212 (432)
                      +. ++..||+
T Consensus       427 ~~~~~~~~~~  436 (438)
T TIGR00712       427 ILLIVVMIGE  436 (438)
T ss_pred             HHHHHHHhhc
Confidence            55 5556665

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.15  E-value=5.3e-10  Score=105.69  Aligned_cols=146  Identities=14%  Similarity=0.027  Sum_probs=110.8

Q ss_pred             hhhh-hhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHh-----CChhHHHH
Q 013992           54 LLYI-RDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAA-----PNPGALIT  127 (432)
Q Consensus        54 ~~~i-~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~  127 (432)
                      .|.+ .+++|.+..+.   ++......++..++.++.|+++||+|+|+.+..+.++..++.++....     ++.+.+.+
T Consensus       238 ~p~~~~~~~g~~~~~~---g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  314 (406)
T PRK15402        238 SPVILISGEQLSSYEY---GLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTA  314 (406)
T ss_pred             hHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHH
Confidence            3443 46678877766   777777777888999999999999999999999888887777766543     35666777


Q ss_pred             HHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHHHHHHH
Q 013992          128 GRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFI  204 (432)
Q Consensus       128 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~~~~~~  204 (432)
                      ..++.|++.+...+......... ++++|++..+..+....+|..+|+.+.+.+.+..+ |....+..++..++...
T Consensus       315 ~~~~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~  389 (406)
T PRK15402        315 GLSLYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGG-NGLFNLFNLANGLLWLL  389 (406)
T ss_pred             HHHHHHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCc-hHHHHHHHHHHHHHHHH
Confidence            88889999887776665555443 45889999999999999999999999999988877 55544444444444433

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.14  E-value=1.2e-09  Score=102.62  Aligned_cols=145  Identities=10%  Similarity=-0.015  Sum_probs=113.7

Q ss_pred             hhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHH-HHHHHHHHHHhCChhHHHHHHhh
Q 013992           53 ALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFL-FFVGAVIMAAAPNPGALITGRVF  131 (432)
Q Consensus        53 ~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~r~l  131 (432)
                      ..|.+.+++|.+..+.   +.+...+.++..++.++.+++.||.+ |+.++.+..+ .....++....++.+.+.+..++
T Consensus       239 ~~p~~~~~~g~s~~~~---g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l  314 (394)
T PRK10213        239 IRPVYMNLAGFGVDGL---TLVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLWGSDKIVATGVAII  314 (394)
T ss_pred             HHHHHHHhcCCChhHH---HHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            3466777888887777   88889999999999999999999965 4444444444 44444455566778888888899


Q ss_pred             hhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHHHHHH
Q 013992          132 VGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQF  203 (432)
Q Consensus       132 ~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~~~~~  203 (432)
                      .|++.+...+...+++.+..| +++++..+.......+|..+|+.+++.+.+..+ ++..++..++..++..
T Consensus       315 ~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g-~~~~~~~~~~~~~~~~  384 (394)
T PRK10213        315 WGLTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIG-LTSPLMLSGTLMLLTA  384 (394)
T ss_pred             HHHHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-hhhHHHHHHHHHHHHH
Confidence            999999888888888988887 456788888888889999999999999999877 8888888776554443

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.13  E-value=2.7e-10  Score=107.21  Aligned_cols=152  Identities=11%  Similarity=0.081  Sum_probs=115.4

Q ss_pred             hhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhc-cccchHHHHHHHHHHHHHHHHHHHhCChhHHHHHHh
Q 013992           52 GALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMND-RFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRV  130 (432)
Q Consensus        52 ~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d-r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~  130 (432)
                      ..+|.+.++.+.++.+.   +++.+...++...+..+.+++.| |++.|+.+..+.++.+++.++.+++++++.+.+..+
T Consensus       229 ~~~p~~~~~~~~~~~~~---g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  305 (400)
T PRK11646        229 LMLPIMVNDIAGSPSAV---KWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLIC  305 (400)
T ss_pred             HhhhhhHHhhcCCchHH---HHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            34566656654455555   77777777666655655666665 577777778888888888888888888888878888


Q ss_pred             hhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCC---chHHHHHhhHHHHHHHHHHH
Q 013992          131 FVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPG---TWRWMLGVAGIPALLQFILM  206 (432)
Q Consensus       131 l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~---~wr~~f~~~~~~~~~~~~~~  206 (432)
                      +.|++.+...|...+++.|..|+++|++++++.+....+|..+||.+++++.+..+   .-...++..++.+++..+..
T Consensus       306 l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (400)
T PRK11646        306 LFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLAL  384 (400)
T ss_pred             HHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHHH
Confidence            88998888888888999999999999999999999999999999999999987642   12455555555555554443

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.12  E-value=8.3e-10  Score=104.14  Aligned_cols=148  Identities=16%  Similarity=0.118  Sum_probs=104.9

Q ss_pred             hhhhhhccccchhhhHHHHHHHHHH-HHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHH---HHh-CChhHHHHH
Q 013992           54 LLYIRDDFKSVDRKTLLQESIVSMA-VAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIM---AAA-PNPGALITG  128 (432)
Q Consensus        54 ~~~i~~~~~~~~~~~~~~~~~~s~~-~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~-~~~~~~~~~  128 (432)
                      .+.+.+++|.+.++.   +++.+.. .++..++.++.|++.||+|||+.+..+..+..+..+..   ++. ++.+.+.+.
T Consensus       233 ~~~l~~~~G~~~~~~---g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~  309 (402)
T PRK11902        233 TTFLIRGAGFSAGEV---GIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALA  309 (402)
T ss_pred             HHHHHHhcCCCHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence            345667788887777   7777554 45688999999999999999998887777666554433   344 455655555


Q ss_pred             Hh----hhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHHHHHHH
Q 013992          129 RV----FVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFI  204 (432)
Q Consensus       129 r~----l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~~~~~~  204 (432)
                      -+    ..|++.+...+....++.+.+|.+++    +..+....+|..++..+++.+.+..| |+..|...++.+++..+
T Consensus       310 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G~l~~~~G-~~~~f~~~~~~~~~~~~  384 (402)
T PRK11902        310 IGIENLCGGMGTAAFVALLMALCNRSFSATQY----ALLSALASVGRVYVGPTSGYLVEAYG-WPGFYLMTVVIALPGLA  384 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHH
Confidence            43    44555666666666777777776554    44555556777766778999999888 99999999888877766


Q ss_pred             HHhhc
Q 013992          205 LMLLL  209 (432)
Q Consensus       205 ~~~~~  209 (432)
                      +....
T Consensus       385 ~~~~~  389 (402)
T PRK11902        385 LLWLM  389 (402)
T ss_pred             HHHHH
Confidence            65443

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.11  E-value=3.7e-09  Score=99.17  Aligned_cols=137  Identities=20%  Similarity=0.328  Sum_probs=100.7

Q ss_pred             hhh-hhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHh-----CChhHHHH
Q 013992           54 LLY-IRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAA-----PNPGALIT  127 (432)
Q Consensus        54 ~~~-i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~  127 (432)
                      .|. +.+++|.++.+.   +++.+...++..++.++.|++.||+|||+.+..+..+..++.++....     ++...+..
T Consensus       229 ~~~~~~~~~g~~~~~~---g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (385)
T TIGR00710       229 APFVYIDIMGVSPSVF---GLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIG  305 (385)
T ss_pred             ChHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence            344 345788887777   888899999999999999999999999999988888877776665543     23445555


Q ss_pred             HHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHH-HHHHHHHHHhhccCCCCchHHHHHhhH
Q 013992          128 GRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITS-GQFLSYLINLAFTRAPGTWRWMLGVAG  196 (432)
Q Consensus       128 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~-g~~i~~~i~~~l~~~~~~wr~~f~~~~  196 (432)
                      ..++.|++.+...+.......|..| ++|+++.++.+..... |...++.++ .+.+..+ |...+....
T Consensus       306 ~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~-~~~~~~~-~~~~~~~~~  372 (385)
T TIGR00710       306 PMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS-LIHGNTA-WPMSLSCLV  372 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH-hccccCh-HHHHHHHHH
Confidence            6778899888888888888889887 5689999988766554 555566555 4443332 555444433

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK09848 glucuronide transporter; Provisional

Probab=99.10  E-value=8.3e-10  Score=105.70  Aligned_cols=129  Identities=15%  Similarity=0.141  Sum_probs=99.6

Q ss_pred             hhhhhh-hccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHhC--ChhHHHHHH
Q 013992           53 ALLYIR-DDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAP--NPGALITGR  129 (432)
Q Consensus        53 ~~~~i~-~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~r  129 (432)
                      ..|++. +.+|.+....   ++......++..++.++.+++.||+|+|+++..+.++..++.++..+.+  +++.+.+..
T Consensus       250 ~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~  326 (448)
T PRK09848        250 SSLFYVRYVLNDTGLFT---VLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVAL  326 (448)
T ss_pred             hheeeEeeecCChHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHH
Confidence            344443 3455544333   4444444667788999999999999999999999998888887776654  566677778


Q ss_pred             hhhhccccchhhhHHHHHHhcCCcc-------cchhHHHHHHHHHHHHHHHHHHHHhhccCC
Q 013992          130 VFVGLGVGMASMTSPLYISEASPAK-------IRGALVSTNGFLITSGQFLSYLINLAFTRA  184 (432)
Q Consensus       130 ~l~G~~~~~~~~~~~~~i~~~~~~~-------~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~  184 (432)
                      ++.|+|.+...+...++.+|..|.+       ++|...+..+....+|..+++.+.+.+.+.
T Consensus       327 ~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~  388 (448)
T PRK09848        327 AIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGL  388 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8899999999999999998888754       358899999999999999999988876543

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.09  E-value=6.8e-10  Score=101.63  Aligned_cols=151  Identities=15%  Similarity=0.186  Sum_probs=125.6

Q ss_pred             cccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhhccccchh
Q 013992           61 FKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMAS  140 (432)
Q Consensus        61 ~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~  140 (432)
                      ++..+......|.+.+...+..++...+..++.+|+|.|+.++++..++.+=.+++++++|.+.+.+.+.+.|+-.+...
T Consensus       251 f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~l  330 (412)
T PF01306_consen  251 FQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLL  330 (412)
T ss_dssp             SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHH
T ss_pred             hcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHH
Confidence            33333344445999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHhcCCcccchhHHHH-HHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHHHHHHHH-HhhcCCC
Q 013992          141 MTSPLYISEASPAKIRGALVST-NGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFIL-MLLLPES  212 (432)
Q Consensus       141 ~~~~~~i~~~~~~~~R~~~~~~-~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~  212 (432)
                      .....|+++.+|+|..+....+ .+....+|..+...++|.+.|..| .+..|++.+.+.++..++ .+.++++
T Consensus       331 va~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G-~~~tylimg~iv~~~~li~~f~l~~~  403 (412)
T PF01306_consen  331 VAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIG-FQHTYLIMGLIVLPFTLISAFTLKKD  403 (412)
T ss_dssp             HHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHS--S
T ss_pred             HHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcC-cHHHHHHHHHHHHHHHHHheeeecCC
Confidence            9999999999999887777776 467888999999999999999887 888898888777766666 5556544

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.08  E-value=1.1e-09  Score=105.52  Aligned_cols=133  Identities=10%  Similarity=0.096  Sum_probs=98.2

Q ss_pred             cchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHH-----hCChhH
Q 013992           50 ISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAA-----APNPGA  124 (432)
Q Consensus        50 ~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~  124 (432)
                      .+...+++.++...+....   +.+.+...++..++.+++++++||+|+|+.+..+..+..++.+....     .++.+.
T Consensus       250 ~~~~~~y~~~y~~~~~~~~---~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (473)
T PRK10429        250 INGFAIYYFTYVIGDADLF---PYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALL  326 (473)
T ss_pred             HhhheeeEEEEECCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHH
Confidence            3334445544443333333   66666677888899999999999999999999888776666555432     345667


Q ss_pred             HHHHHhhhhccccchhhhHHHHHHhcCC-------cccchhHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 013992          125 LITGRVFVGLGVGMASMTSPLYISEASP-------AKIRGALVSTNGFLITSGQFLSYLINLAFTRAP  185 (432)
Q Consensus       125 ~~~~r~l~G~~~~~~~~~~~~~i~~~~~-------~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~  185 (432)
                      +++.-++.|++.+...+...++++|..+       ++..|..++......-+|..+++.+.+++.+..
T Consensus       327 ~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~  394 (473)
T PRK10429        327 IVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLI  394 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            7777788899999889888899999865       233366889999999999999999988876543

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.08  E-value=2.8e-10  Score=106.37  Aligned_cols=139  Identities=22%  Similarity=0.236  Sum_probs=99.3

Q ss_pred             cchhhhh-hhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhcccc-chHHHH-HHH-HHHHHHHHHHHH--hCChh
Q 013992           50 ISGALLY-IRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFG-RRTSIL-VAD-FLFFVGAVIMAA--APNPG  123 (432)
Q Consensus        50 ~~~~~~~-i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G-rr~~l~-~~~-~~~~~~~~~~~~--~~~~~  123 (432)
                      .....|. +.+++|.+..+.   +...+...++..++.++.|++.||.+ ||+... ... ....++......  ..+..
T Consensus       235 ~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (379)
T TIGR00881       235 ILDWSPLYLTQEKGFSKEKA---SWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPL  311 (379)
T ss_pred             HHHHHHHHHHHHhCCCHHHH---HHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHH
Confidence            3444454 445678887777   88899999999999999999999864 333222 221 111222222222  23455


Q ss_pred             HHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHH
Q 013992          124 ALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWML  192 (432)
Q Consensus       124 ~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f  192 (432)
                      ...+..++.|+......+....+..|.+|+++|+++.++.+....+|..++|.+.+.+.+..+ |++.|
T Consensus       312 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~f  379 (379)
T TIGR00881       312 MDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFG-WAGAF  379 (379)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhc-ccccC
Confidence            555666777766555566666788999999999999999999999999999999999999877 88754

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.06  E-value=1.3e-09  Score=116.94  Aligned_cols=144  Identities=15%  Similarity=0.241  Sum_probs=120.4

Q ss_pred             hhhhhccccchh-hhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhh
Q 013992           55 LYIRDDFKSVDR-KTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVG  133 (432)
Q Consensus        55 ~~i~~~~~~~~~-~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G  133 (432)
                      +++.+++|.+.. ..   +++.+...++..++.++.|+++||+++|+++.++.++.+++.++..+..+.+.+++..++.|
T Consensus       257 ~~~~~~~g~s~~~~~---g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  333 (1146)
T PRK08633        257 AYAKEVLGLDNTFQV---QYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFG  333 (1146)
T ss_pred             HHHHHHhCCCcHHHH---HHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            345566788776 66   88999999999999999999999999999999999988888888888889888888999999


Q ss_pred             ccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHHHH
Q 013992          134 LGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALL  201 (432)
Q Consensus       134 ~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~~~  201 (432)
                      ++.+...+...+++.+..|+++|++++++.+....+|..+++.+++.+.....++...|++.+.+.++
T Consensus       334 ~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  401 (1146)
T PRK08633        334 FSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLI  401 (1146)
T ss_pred             HHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence            99999888889999999999999999999999999999888888776654321366666665554443

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.05  E-value=6.2e-09  Score=98.37  Aligned_cols=275  Identities=15%  Similarity=0.179  Sum_probs=165.1

Q ss_pred             chhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhcccc-----chHHHHHHHHHHHHHHHHHHHhC----C
Q 013992           51 SGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFG-----RRTSILVADFLFFVGAVIMAAAP----N  121 (432)
Q Consensus        51 ~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G-----rr~~l~~~~~~~~~~~~~~~~~~----~  121 (432)
                      ....|.+.+++|.++.+.   ....+...+...+ .++.|.++|-+.     ||+-++++.++..++.+..+..+    +
T Consensus        10 ~~~~~~l~~~l~ls~~~~---~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s   85 (433)
T PF03092_consen   10 LAIYPFLKDDLGLSPAQL---QRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESS   85 (433)
T ss_pred             HHHHHHHHHHcCCCHHHH---HHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccch
Confidence            456678889999999888   7777777776655 789999999873     55555667766666555555533    4


Q ss_pred             hhHHHHHHhhhhccccchhhhHHHHHHhcCCc--ccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHH
Q 013992          122 PGALITGRVFVGLGVGMASMTSPLYISEASPA--KIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPA  199 (432)
Q Consensus       122 ~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~  199 (432)
                      .....+.-++..+|.......+-+...|....  +.|+...+.......+|.+++..++|.+.+..+ +|..|.+.+.+.
T Consensus        86 ~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~-~~~~f~i~~~~~  164 (433)
T PF03092_consen   86 AAIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFG-PQGVFLISAALP  164 (433)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCC-CeEEehHHHHHH
Confidence            66666677888888888888888898888742  337788888888899999999999999998877 899998888766


Q ss_pred             HHHHHHHhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhHHHhhcccchhHHHH-
Q 013992          200 LLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLI-  278 (432)
Q Consensus       200 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  278 (432)
                      .+..+..+++.|..+    +++.++....                 .+..........++.....++.++.+..+...+ 
T Consensus       165 ~l~~~~~~~~~~e~~----~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~  223 (433)
T PF03092_consen  165 LLMLIVALFLLEERK----VRPADEVFSF-----------------GKEEVPCLFGSFREQLSELWRALQQRAIWQPILF  223 (433)
T ss_pred             HHHHHHHHHhhhhcc----ccccchhhcc-----------------cccccchhhHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            666555444433211    0000000000                 000000000001122335567777787777665 


Q ss_pred             HHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhhHhHHHHHH
Q 013992          279 AGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVI  353 (432)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~  353 (432)
                      ..++... ..........++...... -.+.++...+.+..+..++.++|..+......+..-|+++....++..
T Consensus       224 ~~~~~~~-~~~~~~a~~fy~~~~~~~-gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~  296 (433)
T PF03092_consen  224 FIFFFNL-PPSISSASSFYFQTDALG-GPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSV  296 (433)
T ss_pred             HHHHHHh-ccCCCCccEEEEEecccc-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            2211111 111000001111111111 112456666667677777777777777776666666666655544443

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.04  E-value=1.4e-09  Score=103.41  Aligned_cols=141  Identities=17%  Similarity=0.225  Sum_probs=114.1

Q ss_pred             cccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHhC
Q 013992           41 LLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAP  120 (432)
Q Consensus        41 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~  120 (432)
                      ++........+...+++.++.-.+++..   +....+..++..++.+++++++||+|+|+++..+..+.+++.++..+.+
T Consensus       235 ~~~~~~~~~~~~~~~y~~~~vl~~~~~~---~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~  311 (428)
T PF13347_consen  235 FLQWLAFALMNTFLPYYFTYVLGNEGLI---SIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLG  311 (428)
T ss_pred             HHHHhhhhhhhhHHHHHHHHHhcCchhh---HHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHH
Confidence            3344444445555566655532223334   7777888999999999999999999999999999999999999888876


Q ss_pred             --ChhHHHHHHhhhhccccchhhhHHHHHHhcCCc-------ccchhHHHHHHHHHHHHHHHHHHHHhhccCC
Q 013992          121 --NPGALITGRVFVGLGVGMASMTSPLYISEASPA-------KIRGALVSTNGFLITSGQFLSYLINLAFTRA  184 (432)
Q Consensus       121 --~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~-------~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~  184 (432)
                        |.+.+++.-++.|++.+...+...++++|..+.       ++.|...+..+....+|..++..+.+.+.+.
T Consensus       312 ~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~  384 (428)
T PF13347_consen  312 PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLAL  384 (428)
T ss_pred             hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence              999999999999999999999999999998873       3348889999999999999999988877654

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.01  E-value=1e-09  Score=98.44  Aligned_cols=149  Identities=21%  Similarity=0.213  Sum_probs=119.4

Q ss_pred             chhhh-hhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHhC-------Ch
Q 013992           51 SGALL-YIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAP-------NP  122 (432)
Q Consensus        51 ~~~~~-~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-------~~  122 (432)
                      +..+| ++.++|+.++.+.   +.....+.+...+..+.+|+++||+|.+|++......+.++..+.+...       +.
T Consensus       238 s~~l~~~~~~~fg~~~~~A---g~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~  314 (417)
T COG2223         238 SAYLPMYLVTQFGLSPVTA---GLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSF  314 (417)
T ss_pred             HHHHHHHHHHhcCCChhhH---HHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcch
Confidence            34444 4678899999998   8999999999999999999999999999999999999999888887763       33


Q ss_pred             hH----HHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHH
Q 013992          123 GA----LITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIP  198 (432)
Q Consensus       123 ~~----~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~  198 (432)
                      ..    ++...+..|+|.|.    ....+..++|+ +-|.+.|+.+....+|...-|..-+...+..+++...|++....
T Consensus       315 ~~~~~~~l~l~~~~G~GnGs----vfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~  389 (417)
T COG2223         315 VVFVAVFLALFVFAGLGNGS----VFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAF  389 (417)
T ss_pred             HHHHHHHHHHHHHhccCcch----heeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHH
Confidence            33    44455666666664    45666777765 46899999999999999888888888888877799999998887


Q ss_pred             HHHHHHHHh
Q 013992          199 ALLQFILML  207 (432)
Q Consensus       199 ~~~~~~~~~  207 (432)
                      .+++.+...
T Consensus       390 ~~~a~v~~~  398 (417)
T COG2223         390 YLVALVLTW  398 (417)
T ss_pred             HHHHHHHHH
Confidence            777776633

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.01  E-value=5.3e-09  Score=98.20  Aligned_cols=139  Identities=9%  Similarity=0.013  Sum_probs=109.2

Q ss_pred             hhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhhcc
Q 013992           56 YIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLG  135 (432)
Q Consensus        56 ~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~  135 (432)
                      .+.+.+|.++.+.   |++.+...++..+++++.+++.||+++|+++..+. +.++..++.++.++++...+..++.|++
T Consensus       231 ~~~~~lg~s~~~~---G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~  306 (393)
T PRK11195        231 WAPVALGITLNQP---AYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMALQHSLLPAYPLLILIGAL  306 (393)
T ss_pred             HHHHHcCCChhHH---HHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence            4456678888777   99999999999999999999999999999888775 4455555566677777777788889999


Q ss_pred             ccchhhhHHHHHHhcCCccc-chhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHH
Q 013992          136 VGMASMTSPLYISEASPAKI-RGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIP  198 (432)
Q Consensus       136 ~~~~~~~~~~~i~~~~~~~~-R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~  198 (432)
                      .+...+...+.+.|..|++. +|++.++.+....+|..++..+.+.+....-.+++.|...+.+
T Consensus       307 ~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (393)
T PRK11195        307 GGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVKLGVPVVAVIVGFGLL  370 (393)
T ss_pred             hhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            88888888888888766654 7999999999999999999999887754422355555445444

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.01  E-value=1.8e-09  Score=104.62  Aligned_cols=131  Identities=15%  Similarity=0.081  Sum_probs=109.6

Q ss_pred             chhhhhhh-hccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHH----hCChhHH
Q 013992           51 SGALLYIR-DDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAA----APNPGAL  125 (432)
Q Consensus        51 ~~~~~~i~-~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~----~~~~~~~  125 (432)
                      ...+|.+. +.+|.+..+.   ++......++..++.++.|++.||+|||+.+..+..+.+++..+..+    ..+.+.+
T Consensus       275 ~~~~p~~~~~~~g~s~~~~---g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  351 (485)
T TIGR00711       275 FYLLPLYLQQVLGYTALQA---GLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAI  351 (485)
T ss_pred             HHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHH
Confidence            34455544 4578888777   88989999999999999999999999999999999888888877663    2355667


Q ss_pred             HHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCC
Q 013992          126 ITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRA  184 (432)
Q Consensus       126 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~  184 (432)
                      ....++.|++.+...+.......+..|+++|+.+.++.+....+|..+|+.+.+.+.+.
T Consensus       352 ~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       352 ALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTN  410 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77788999999988877777888889999999999999999999999999998877643

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00901 2A0125 AmpG-related permease

Probab=98.99  E-value=1.4e-09  Score=100.79  Aligned_cols=116  Identities=14%  Similarity=0.124  Sum_probs=93.6

Q ss_pred             cchhhhhhhhccccchhhhHHHHHHHHHHH-HHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHh---------
Q 013992           50 ISGALLYIRDDFKSVDRKTLLQESIVSMAV-AGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAA---------  119 (432)
Q Consensus        50 ~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~-~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---------  119 (432)
                      .....|...+++|.+..+.   +.+.+... ++..++.+++|++.||+|||+.+..+.++.+++..+..+.         
T Consensus       228 ~~~~~~~~l~~~g~~~~~~---g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (356)
T TIGR00901       228 ATVLTTLFLLDMGFSKEEI---ALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGI  304 (356)
T ss_pred             HHHHHHHHHHHcCCCHHHH---HHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence            3445566556688887777   77776655 5778999999999999999999998888888776655443         


Q ss_pred             --CChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHH
Q 013992          120 --PNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLIT  168 (432)
Q Consensus       120 --~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~  168 (432)
                        ++.+.+..+.++.+++.+...+...+++.|.+|+++|++.+++.+...+
T Consensus       305 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       305 TFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence              3456777788899999999999999999999999999999999876543

>PRK09669 putative symporter YagG; Provisional

Probab=98.99  E-value=4.3e-09  Score=100.62  Aligned_cols=115  Identities=12%  Similarity=0.102  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHH--hCChhHHHHHHhhhhccccchhhhHHHHHHh
Q 013992           72 ESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAA--APNPGALITGRVFVGLGVGMASMTSPLYISE  149 (432)
Q Consensus        72 ~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~  149 (432)
                      +.+.....+...++.+++++++||+|+|+.+..+.++..+..+...+  .++.+.+++..++.|++.+...+...++++|
T Consensus       267 ~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad  346 (444)
T PRK09669        267 TLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSD  346 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45556667778888999999999999999999887766654443322  3567777888889999999999999999999


Q ss_pred             cCCc-------ccchhHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 013992          150 ASPA-------KIRGALVSTNGFLITSGQFLSYLINLAFTRAPG  186 (432)
Q Consensus       150 ~~~~-------~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~  186 (432)
                      ..+.       +..|...+..+....+|..+|+.+++.+.+..|
T Consensus       347 ~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~G  390 (444)
T PRK09669        347 VVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVD  390 (444)
T ss_pred             hhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            8862       223667888888899999999999988776543

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.99  E-value=1.4e-09  Score=100.69  Aligned_cols=123  Identities=24%  Similarity=0.337  Sum_probs=103.4

Q ss_pred             cchhhhhh-hhccccc-hhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHH---hCChhH
Q 013992           50 ISGALLYI-RDDFKSV-DRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAA---APNPGA  124 (432)
Q Consensus        50 ~~~~~~~i-~~~~~~~-~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~---~~~~~~  124 (432)
                      .....|.+ .+++|.+ ..+.   +...+...++..++.++.|++.||+|+|+..........+..+....   .++...
T Consensus       225 ~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (352)
T PF07690_consen  225 FSFFLPLYLQEVLGFSGPSQA---GLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVW  301 (352)
T ss_dssp             HHHHHHHHCCHHHHCCTHHHH---HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHH
T ss_pred             hhcccchhhhhccCCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            55566664 7888888 5666   88899999999999999999999999988887777777666665544   345677


Q ss_pred             HHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHH
Q 013992          125 LITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSY  175 (432)
Q Consensus       125 ~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~  175 (432)
                      .++.-++.|++.+...+....++.|..|+++|+++.++.+....+|..++|
T Consensus       302 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  302 LIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            777888899999999999999999999999999999999999999999887

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.97  E-value=3.2e-09  Score=102.27  Aligned_cols=174  Identities=9%  Similarity=0.023  Sum_probs=113.8

Q ss_pred             HHHHHhhcccceeccccchhhhhh-hhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHH--------HHH
Q 013992           34 FSAGIGGLLFGYDTGVISGALLYI-RDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTS--------ILV  104 (432)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~--------l~~  104 (432)
                      ...++..+............+|.+ .+++|.+..+.   ++..++..++..++.++.|+++||+++|+.        +..
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~---g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~  340 (465)
T TIGR00894       264 WAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKEN---GLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFN  340 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence            333444444444444444556654 45678887777   899999999999999999999999875531        111


Q ss_pred             HHHHH--HHHHHHHHH-hCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhc
Q 013992          105 ADFLF--FVGAVIMAA-APNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAF  181 (432)
Q Consensus       105 ~~~~~--~~~~~~~~~-~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l  181 (432)
                      +....  .+..+.... ..+....++.-.+.+.+.+...+.......|..|+ .+|.+.++.+....+|..++|.+.+.+
T Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~  419 (465)
T TIGR00894       341 GIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNI  419 (465)
T ss_pred             HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence            11111  111111222 23444444445555555554555555556677765 799999999999999999999999988


Q ss_pred             cCCC--CchHHHHHhhHHHHHHHHHHHhhcCC
Q 013992          182 TRAP--GTWRWMLGVAGIPALLQFILMLLLPE  211 (432)
Q Consensus       182 ~~~~--~~wr~~f~~~~~~~~~~~~~~~~~~e  211 (432)
                      .+..  ++|+..|.+.++..++..+...++++
T Consensus       420 ~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~  451 (465)
T TIGR00894       420 LSQDSKNVWLIVFLIMAFVNILCVIFYLIFGS  451 (465)
T ss_pred             eCCCCchHHHHHHHHHHHHHHHHHHHeeeeec
Confidence            7753  35999999988877777766555543

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.96  E-value=5.2e-09  Score=112.01  Aligned_cols=146  Identities=9%  Similarity=0.086  Sum_probs=117.5

Q ss_pred             hhhhh-hhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHh------------
Q 013992           53 ALLYI-RDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAA------------  119 (432)
Q Consensus        53 ~~~~i-~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~------------  119 (432)
                      .+|.+ .+.+|.+....   +++.+.+.++..++.++.|+++|+.++++.+..+.++.+++.+...+.            
T Consensus       247 ~~p~~~~~~~g~~~~~~---g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  323 (1140)
T PRK06814        247 QLPLLAKETLGGDENVA---TLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLK  323 (1140)
T ss_pred             HhHHHHHHHcCCchHHH---HHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhccccccccccccc
Confidence            44554 45578877777   999999999999999999999999888877776666666655544443            


Q ss_pred             --------CChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHH
Q 013992          120 --------PNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWM  191 (432)
Q Consensus       120 --------~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~  191 (432)
                              ++.+.+++..++.|++.+...+...+++.+.+|+++||+++|..+....+|..+++++.+.+.+...+....
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~  403 (1140)
T PRK06814        324 SILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWI  403 (1140)
T ss_pred             chhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHH
Confidence                    677888888899999999999999999999999999999999999999999999999998887543347777


Q ss_pred             HHhhHHHHHH
Q 013992          192 LGVAGIPALL  201 (432)
Q Consensus       192 f~~~~~~~~~  201 (432)
                      +++.++..++
T Consensus       404 ~~~~~~~~~~  413 (1140)
T PRK06814        404 ILFIALANLI  413 (1140)
T ss_pred             HHHHHHHHHH
Confidence            6665554333

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.95  E-value=1.5e-08  Score=94.81  Aligned_cols=121  Identities=17%  Similarity=0.144  Sum_probs=85.4

Q ss_pred             hhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHH---HH-hCChhHHHHHHhh
Q 013992           56 YIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIM---AA-APNPGALITGRVF  131 (432)
Q Consensus        56 ~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~-~~~~~~~~~~r~l  131 (432)
                      .+.+++|.+..+.   ++..+...++..++.++.|++.||+|||+.+..+..+..+..+..   .. ..+.+...++-.+
T Consensus       220 ~~~~~~g~s~~~~---g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (377)
T PRK11102        220 VYIELNGVSPQNF---GYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAA  296 (377)
T ss_pred             HHHHHhCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            3455678887777   889999999999999999999999999999988876654433322   22 2345555555545


Q ss_pred             hhccccchhhhHHHHHHhcCCcccchhHHHHHHHH-HHHHHHHHHHHHhh
Q 013992          132 VGLGVGMASMTSPLYISEASPAKIRGALVSTNGFL-ITSGQFLSYLINLA  180 (432)
Q Consensus       132 ~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~-~~~g~~i~~~i~~~  180 (432)
                      .+.+.+........++.|..| ++|+++.+..... ..+|..+++.++..
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~~  345 (377)
T PRK11102        297 FVGCVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSLA  345 (377)
T ss_pred             HHHHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            555555555666667788776 6799998886544 55777777777654

>PRK10133 L-fucose transporter; Provisional

Probab=98.95  E-value=1.4e-08  Score=96.52  Aligned_cols=138  Identities=10%  Similarity=-0.046  Sum_probs=108.9

Q ss_pred             hhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhhcccc
Q 013992           58 RDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVG  137 (432)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~  137 (432)
                      .+++|.++.+.   ++....+.++..++.++.+++.||+|||+++..+.++..++.++..+.++.. .+..-.+.|++.+
T Consensus       287 ~~~~g~s~~~a---g~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~glg~~  362 (438)
T PRK10133        287 EEIPGMTAGFA---ANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLIALTLCSAFMS  362 (438)
T ss_pred             hhcCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHH
Confidence            35678888888   9999999999999999999999999999999998888777776666666543 3456678999999


Q ss_pred             chhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHHHH
Q 013992          138 MASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALL  201 (432)
Q Consensus       138 ~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~~~  201 (432)
                      ..+|...+...|..|++ .+.+.++... ...|..++|.+.+.+.+..++-|..|++..+..+.
T Consensus       363 ~i~P~~~s~a~~~~~~~-~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~  424 (438)
T PRK10133        363 IQYPTIFSLGIKNLGQD-TKYGSSFIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAV  424 (438)
T ss_pred             HHHHHHHHHHHcccchh-hccchhHHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence            99999999999998764 5677777654 44678888888888887754367777655544333

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.94  E-value=5.5e-09  Score=101.22  Aligned_cols=127  Identities=13%  Similarity=0.020  Sum_probs=108.2

Q ss_pred             hhh-hhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHh---CChhHHHHH
Q 013992           53 ALL-YIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAA---PNPGALITG  128 (432)
Q Consensus        53 ~~~-~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~  128 (432)
                      ..| ++++.+|.+..+.   +.....+.++..++.++.|++.||+|+|+.+..+.++..++.++....   ++.+.....
T Consensus       281 ~~~~~lq~v~g~s~~~a---g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~  357 (495)
T PRK14995        281 LMAQELQFVHGLSPLEA---GMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGL  357 (495)
T ss_pred             HHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Confidence            444 3455578888888   999999999999999999999999999999998988888777665442   455666777


Q ss_pred             HhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhcc
Q 013992          129 RVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFT  182 (432)
Q Consensus       129 r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~  182 (432)
                      .++.|++.+...+.....+.+..|+++++.+.++.+....+|..+|+.+.+.+.
T Consensus       358 ~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~  411 (495)
T PRK14995        358 MALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLL  411 (495)
T ss_pred             HHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999998888889999999999999999999999999999999988775

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.93  E-value=3.2e-09  Score=93.22  Aligned_cols=130  Identities=18%  Similarity=0.178  Sum_probs=95.6

Q ss_pred             HHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhH
Q 013992           80 AGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGAL  159 (432)
Q Consensus        80 ~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~  159 (432)
                      +....|.++.+.+.||+|||+.+..+.+++++..++.....+-..+.+.-+..-++..+.+.+.++|..|.+|.+.|+.+
T Consensus       392 laefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRatg  471 (528)
T KOG0253|consen  392 LAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATG  471 (528)
T ss_pred             HhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhcc
Confidence            44567888999999999999999999999999998887765544433333333333444555677899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHHHHHHHHHhhcCCC
Q 013992          160 VSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLLLPES  212 (432)
Q Consensus       160 ~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~  212 (432)
                      .|.-+...-+|.++.|+++ ...+..  -.....+.+..+++..+...++|-.
T Consensus       472 vGtcSsmaRIggI~~p~iA-~~~e~s--~sl~i~vy~~~~ilagIavcffPiE  521 (528)
T KOG0253|consen  472 VGTCSSMARIGGIFSPVIA-MRAELS--TSLPIFVYGALFILAGIAVCFFPIE  521 (528)
T ss_pred             hhhhhhHHhhhhhhhhHHH-HHhccc--eeehHHHHHHHHHHHHHHheeeeec
Confidence            9999999999999999999 333321  2233444555566666666666643

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.93  E-value=2.5e-08  Score=90.26  Aligned_cols=155  Identities=28%  Similarity=0.366  Sum_probs=123.4

Q ss_pred             eeccccchhhhhhhhccccchh--hhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHhCC-
Q 013992           45 YDTGVISGALLYIRDDFKSVDR--KTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPN-  121 (432)
Q Consensus        45 ~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~-  121 (432)
                      .+........+.+..+++.+..  ..   ++..+.+.++..++.++.|.++||+|||+.++.+.....++.+++++..+ 
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~   92 (338)
T COG0477          16 LDLGLLSPALPLLLSTLSLSSGRLLY---GLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNV   92 (338)
T ss_pred             HhcchHHHHHHHHHHHcCCCchhHHH---HHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccc
Confidence            5555566677777777765542  44   88999999999999999999999999999888888776666777777776 


Q ss_pred             -hhHHHHHHhhhhccccchhhhHHHHHHhcCCc-ccchhHHHHHHH-HHHHHHHHHHHHHhhccCC-CCchHHHHHhhHH
Q 013992          122 -PGALITGRVFVGLGVGMASMTSPLYISEASPA-KIRGALVSTNGF-LITSGQFLSYLINLAFTRA-PGTWRWMLGVAGI  197 (432)
Q Consensus       122 -~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~-~~R~~~~~~~~~-~~~~g~~i~~~i~~~l~~~-~~~wr~~f~~~~~  197 (432)
                       .+.+++.|+.+|++.+...+...+++.|+.|+ ++|+...+.... ...+|..+++.+++.+... ..+||+.|.....
T Consensus        93 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (338)
T COG0477          93 GLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAAL  172 (338)
T ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence             89999999999999999999999999999998 678988888888 5778888888777766544 2249997766665


Q ss_pred             HHHHH
Q 013992          198 PALLQ  202 (432)
Q Consensus       198 ~~~~~  202 (432)
                      .....
T Consensus       173 ~~~~~  177 (338)
T COG0477         173 LGLLL  177 (338)
T ss_pred             HHHHH
Confidence            54433

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.92  E-value=2.9e-08  Score=92.06  Aligned_cols=153  Identities=20%  Similarity=0.145  Sum_probs=103.4

Q ss_pred             ccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccc---hHHHHH-HHHHHHHHHHHHHHhCChhH
Q 013992           49 VISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGR---RTSILV-ADFLFFVGAVIMAAAPNPGA  124 (432)
Q Consensus        49 ~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Gr---r~~l~~-~~~~~~~~~~~~~~~~~~~~  124 (432)
                      .+...+|.+.++.|.+.. .   +...++..+...++   .++++||.+|   |+.... ..++.++...+.++..+...
T Consensus       210 ~~~~wlp~~L~~~g~s~~-~---~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~  282 (368)
T TIGR00903       210 NLAIWLEAALRPAGLEDI-A---GDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELNRLA  282 (368)
T ss_pred             HHHHHHHHHHHHCCCChH-H---HHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccccHH
Confidence            344566777777776543 3   55555555544444   4677777654   343332 34444444445555555555


Q ss_pred             HHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHHHHHHH
Q 013992          125 LITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFI  204 (432)
Q Consensus       125 ~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~~~~~~  204 (432)
                      .++.-++.|++.....+...++.+|.+|++.|+++.|+.+....+|..++|.+.+.+..  + -+..|.+.+.+.++..+
T Consensus       283 ~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~-~~~~f~~~~~~~~i~~~  359 (368)
T TIGR00903       283 LFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--S-AEAYFTFLAILITIAFA  359 (368)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--C-HHHHHHHHHHHHHHHHH
Confidence            55556667777777777788899999999999999999999999999898888877763  3 77788887777777666


Q ss_pred             HHhhcCC
Q 013992          205 LMLLLPE  211 (432)
Q Consensus       205 ~~~~~~e  211 (432)
                      ....+++
T Consensus       360 ~~~~~~~  366 (368)
T TIGR00903       360 IALLLPN  366 (368)
T ss_pred             HHHhCCC
Confidence            6544454

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=98.92  E-value=3.7e-09  Score=94.88  Aligned_cols=173  Identities=20%  Similarity=0.194  Sum_probs=133.6

Q ss_pred             HHHHHHHHhhcccceeccccchhhhh-hhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccc--cchHHHH-HHH
Q 013992           31 RLAFSAGIGGLLFGYDTGVISGALLY-IRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRF--GRRTSIL-VAD  106 (432)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~--Grr~~l~-~~~  106 (432)
                      +.+..++++.+..+..+..+.--.|. +.|+-|.+..+.   ++..+++-.+...|+++.|+++||+  |||.... +.+
T Consensus       252 k~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a---~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~  328 (448)
T COG2271         252 KLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKA---NWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFM  328 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHH---HHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHH
Confidence            34566777777777777766665564 456667888888   9999999999999999999999996  6775554 344


Q ss_pred             HHHHHHHHHHHHhC--ChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHH-HHHHHHHHHhhccC
Q 013992          107 FLFFVGAVIMAAAP--NPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITS-GQFLSYLINLAFTR  183 (432)
Q Consensus       107 ~~~~~~~~~~~~~~--~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~-g~~i~~~i~~~l~~  183 (432)
                      +...++.+..-.++  |+....++-++.|+..-+..........|..|++--|.+.|+...+..+ |...+....+++.|
T Consensus       329 ~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d  408 (448)
T COG2271         329 LLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIAD  408 (448)
T ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEe
Confidence            44444444444454  4577788888888876666666667789999999999999999999998 88888888899988


Q ss_pred             CCCchHHHHHhhHHHHHHHHHHHh
Q 013992          184 APGTWRWMLGVAGIPALLQFILML  207 (432)
Q Consensus       184 ~~~~wr~~f~~~~~~~~~~~~~~~  207 (432)
                      ..+ |...|++..+.+++..+++.
T Consensus       409 ~~g-W~g~Fi~~~~~a~l~~lll~  431 (448)
T COG2271         409 TWG-WDGGFIVLSIAALLAILLLL  431 (448)
T ss_pred             cCC-CcchHHHHHHHHHHHHHHHH
Confidence            877 99999988877776666533

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.92  E-value=6.9e-08  Score=85.13  Aligned_cols=177  Identities=21%  Similarity=0.222  Sum_probs=139.3

Q ss_pred             cCCCChhHHHHHHHHHHhhcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhcc-ccchH
Q 013992           22 LSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDR-FGRRT  100 (432)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~  100 (432)
                      +.|+++..|.+.+...+-.+..+    ..-.-+|.+..|-|.+..+.   |.+.+...+.....++....+++| -++|+
T Consensus       203 ~vw~~~~aW~vtLfmGlqS~~~Y----~~~~WLP~ili~~G~sa~~a---G~llsl~~l~~~~~~ll~P~la~R~~n~r~  275 (395)
T COG2807         203 KVWRSPLAWQVTLFMGLQSLLYY----IVIGWLPAILIDRGLSAAEA---GSLLSLMQLAQLPTALLIPLLARRSKNQRP  275 (395)
T ss_pred             ccccCchhHHHHHHHHhhHHHHH----HHHHHHHHHHHHcCCCHHHh---hhHHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence            35667777777666665444333    34556799999999999999   999999999999999999999985 46778


Q ss_pred             HHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccc-hhHHHHHHHHHHHHHHHHHHHHh
Q 013992          101 SILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIR-GALVSTNGFLITSGQFLSYLINL  179 (432)
Q Consensus       101 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R-~~~~~~~~~~~~~g~~i~~~i~~  179 (432)
                      ..+....++.++.+.+.+.+....+.. -++.|+|.|..++.+...+.+..+..++ ++-.++.+....+=...||.+.|
T Consensus       276 ~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G  354 (395)
T COG2807         276 LVVLALLLMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFG  354 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHh
Confidence            888888888888777777765444433 4899999999999999999998876544 56666666666666778999999


Q ss_pred             hccCCCCchHHHHHhhHHHHHHHHHHH
Q 013992          180 AFTRAPGTWRWMLGVAGIPALLQFILM  206 (432)
Q Consensus       180 ~l~~~~~~wr~~f~~~~~~~~~~~~~~  206 (432)
                      ++-|..++|+...+..+...+...+.-
T Consensus       355 ~lhDa~gsw~~~~~~l~~~~i~m~i~G  381 (395)
T COG2807         355 FLHDATGSWSAPLVLLALATLLMLIFG  381 (395)
T ss_pred             HHHHhcCChHHHHHHHHHHHHHHHHHH
Confidence            999999999999988887777666653

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.92  E-value=5.9e-09  Score=97.86  Aligned_cols=134  Identities=16%  Similarity=0.047  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHH-h-----CChhHHHHHHhhhhccccchhhhHHHHHHh
Q 013992           76 SMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAA-A-----PNPGALITGRVFVGLGVGMASMTSPLYISE  149 (432)
Q Consensus        76 s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-~-----~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~  149 (432)
                      .+..+...+..+++|+++||+|+||++.++.+...++...... .     .+++.+.+..+...++.|........++.+
T Consensus       293 ~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~  372 (462)
T PRK15034        293 FFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAV  372 (462)
T ss_pred             HHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHH
Confidence            3455778888999999999999999999998877777643222 2     245555555544444444444455667777


Q ss_pred             cCCc---------------------ccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHHHHHHHH-Hh
Q 013992          150 ASPA---------------------KIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFIL-ML  207 (432)
Q Consensus       150 ~~~~---------------------~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~~~~~~~-~~  207 (432)
                      ++|+                     ++-|.+.|+.+....+|..+.|.+-+...+..+++...|+...+..+++..+ |+
T Consensus       373 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~  452 (462)
T PRK15034        373 IFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWL  452 (462)
T ss_pred             HHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Confidence            7764                     1346788888888999888888777777777677998888888777777666 44


Q ss_pred             hc
Q 013992          208 LL  209 (432)
Q Consensus       208 ~~  209 (432)
                      ..
T Consensus       453 ~y  454 (462)
T PRK15034        453 VY  454 (462)
T ss_pred             Hh
Confidence            43

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.91  E-value=7.6e-09  Score=97.34  Aligned_cols=132  Identities=13%  Similarity=0.153  Sum_probs=87.3

Q ss_pred             hhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhhccc
Q 013992           57 IRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGV  136 (432)
Q Consensus        57 i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~  136 (432)
                      +.+++|.+..+.   +.+.+...++..++.++.+++.||+|||+++..+..+..++.++..+.++.+.....-.+.+.+.
T Consensus       230 ~~~~~g~~~~~~---~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~  306 (392)
T PRK10473        230 LMEQMGFSRGEY---AIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGF  306 (392)
T ss_pred             HHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            446678877776   88888899999999999999999999999999999988888888777766554444444444444


Q ss_pred             cchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHH
Q 013992          137 GMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGI  197 (432)
Q Consensus       137 ~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~  197 (432)
                      +...+.  ....+..|.++|+   +..+....++..+++.+++++.+..+ +.......+.
T Consensus       307 ~~~~~~--~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g-~~~~~~~~~~  361 (392)
T PRK10473        307 SVGFGV--AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLG-ISAWNMLIGI  361 (392)
T ss_pred             HHHhHH--HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhc-cchhHHHHHH
Confidence            433333  2334555655553   33333445555666666666655444 5444444343

>PRK11043 putative transporter; Provisional

Probab=98.87  E-value=6.9e-08  Score=91.12  Aligned_cols=129  Identities=13%  Similarity=0.083  Sum_probs=98.2

Q ss_pred             hhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHH---HH--hCChhHHHH
Q 013992           53 ALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIM---AA--APNPGALIT  127 (432)
Q Consensus        53 ~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~--~~~~~~~~~  127 (432)
                      ..|.+.+++|.+..+.   ++......++..++..+.+++.||+|+|+.+.......+++.+..   ..  .++....++
T Consensus       225 ~~p~~~~~~g~s~~~~---g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (401)
T PRK11043        225 GSPFILEQMGYSPADI---GLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLI  301 (401)
T ss_pred             HhHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHH
Confidence            4566667788887777   777777788889999999999999999997766555544443322   22  345555666


Q ss_pred             HHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 013992          128 GRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAP  185 (432)
Q Consensus       128 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~  185 (432)
                      ...+.|++.+...+.......|..| ++|+++.++.+.....+...++.+.+.+.+..
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~  358 (401)
T PRK11043        302 PFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALISTP  358 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence            6778888888888888888778776 56999999999888888888888888887653

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=98.86  E-value=1.9e-06  Score=81.23  Aligned_cols=130  Identities=9%  Similarity=-0.047  Sum_probs=92.0

Q ss_pred             hhhhhhhccccchh--hhHHHHHHHHHHHHHHHHH-HHhhhhhhccccchHHHHHHHHHHHHHHHHHHHh--C-------
Q 013992           53 ALLYIRDDFKSVDR--KTLLQESIVSMAVAGAIIG-AAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAA--P-------  120 (432)
Q Consensus        53 ~~~~i~~~~~~~~~--~~~~~~~~~s~~~~~~~i~-~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~-------  120 (432)
                      ++-++.+.+..+..  ......++-+...+...+. .++.+++++|++|++++-.....+.....++++.  +       
T Consensus        25 iLR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p  104 (472)
T TIGR00769        25 ILRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHP  104 (472)
T ss_pred             HHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCC
Confidence            44556666655322  1222377777777766666 8999999999999999888777776666665553  1       


Q ss_pred             ----------------------ChhHHHHHHhhhhccccchhh-hHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHH
Q 013992          121 ----------------------NPGALITGRVFVGLGVGMASM-TSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLI  177 (432)
Q Consensus       121 ----------------------~~~~~~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i  177 (432)
                                            +.|...+..+...+-...... .-..++.|.++.+|-.|..++++.+.++|..+++.+
T Consensus       105 ~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~  184 (472)
T TIGR00769       105 TALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRT  184 (472)
T ss_pred             cHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                  122233333444444444444 667889999999999999999999999999999988


Q ss_pred             Hhhcc
Q 013992          178 NLAFT  182 (432)
Q Consensus       178 ~~~l~  182 (432)
                      ..++.
T Consensus       185 ~~~~~  189 (472)
T TIGR00769       185 IKYFS  189 (472)
T ss_pred             HHHHH
Confidence            88876

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.86  E-value=1.2e-06  Score=86.51  Aligned_cols=156  Identities=17%  Similarity=0.252  Sum_probs=121.7

Q ss_pred             cchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhcc-ccchHHHHHHHHHHHHHHHHHHHhCC-------
Q 013992           50 ISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDR-FGRRTSILVADFLFFVGAVIMAAAPN-------  121 (432)
Q Consensus        50 ~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~-------  121 (432)
                      ......++.+.+|.++...   ..+...+....-+..+++|.++|+ +||++.++.+.++..++.++.+++..       
T Consensus         7 ~aiLvlYl~~~lg~~~~~A---~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~   83 (654)
T TIGR00926         7 RTILVLYFLNFLGFSESTS---TVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPL   83 (654)
T ss_pred             HHHHHHHHHHHcCCcHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccch
Confidence            3445556677788887777   667777777777888999999995 79999999999999999988877421       


Q ss_pred             -hhHHHHHHhhhhccccchhhhHHHHHHhcCCccc---chhHHHHHHHHHHHHHHHHHHHHhhccCCC------CchHHH
Q 013992          122 -PGALITGRVFVGLGVGMASMTSPLYISEASPAKI---RGALVSTNGFLITSGQFLSYLINLAFTRAP------GTWRWM  191 (432)
Q Consensus       122 -~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~---R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~------~~wr~~  191 (432)
                       ....+++-.+..+|.|++-|...+...|-+++++   |...+.++..+.++|..+++.+.+++.+..      .+|...
T Consensus        84 ~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~a  163 (654)
T TIGR00926        84 HDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLA  163 (654)
T ss_pred             HHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHH
Confidence             1235567788888999999999999999997643   567888889999999999999988886332      149999


Q ss_pred             HHhhHHHHHHHHHHHhh
Q 013992          192 LGVAGIPALLQFILMLL  208 (432)
Q Consensus       192 f~~~~~~~~~~~~~~~~  208 (432)
                      |.+.++..++.+++...
T Consensus       164 F~i~~i~m~ia~lvf~~  180 (654)
T TIGR00926       164 FGVPAILMILALIVFMA  180 (654)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99988877777666443

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.84  E-value=6.8e-08  Score=81.95  Aligned_cols=149  Identities=13%  Similarity=0.148  Sum_probs=107.6

Q ss_pred             hhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHH-HHHHHHHhCChhHHHHHHhhhhc
Q 013992           56 YIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFV-GAVIMAAAPNPGALITGRVFVGL  134 (432)
Q Consensus        56 ~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~r~l~G~  134 (432)
                      ..++.||++..+.   +.+.+....-.++.+++.|.++||+|++...+.+..+..+ +-....++  ++.=..+-.+.|+
T Consensus       290 fF~~rfGlS~~~a---~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft--~lsPy~~m~~lGL  364 (459)
T KOG4686|consen  290 FFQKRFGLSAVSA---GNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFT--FLSPYTSMTFLGL  364 (459)
T ss_pred             HHHHhhCCChhhc---cchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhh--hccHHHHHHHHhh
Confidence            4678899999888   8888888888889999999999999999877665544443 33333332  2222345567787


Q ss_pred             cccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHH--H-HHhhHHHHHHHHHHHhhc
Q 013992          135 GVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRW--M-LGVAGIPALLQFILMLLL  209 (432)
Q Consensus       135 ~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~--~-f~~~~~~~~~~~~~~~~~  209 (432)
                      ............++...|+++-|.+.+..+...++|.++.+++.+.+.+..+++-+  . |...+.+++....+.+.+
T Consensus       365 sysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~  442 (459)
T KOG4686|consen  365 SYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYL  442 (459)
T ss_pred             hHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence            76665555566778888889999999999999999999999999999998764332  3 344444444444444444

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=98.82  E-value=1.6e-08  Score=91.61  Aligned_cols=127  Identities=14%  Similarity=0.211  Sum_probs=93.0

Q ss_pred             hhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhcc----ccchHHHHH-HHHHHHHHHHHHHHhCCh----
Q 013992           52 GALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDR----FGRRTSILV-ADFLFFVGAVIMAAAPNP----  122 (432)
Q Consensus        52 ~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr----~Grr~~l~~-~~~~~~~~~~~~~~~~~~----  122 (432)
                      ..++++.++.|++..-.   +.+--..-+...+.+|+.|..+||    |||||.++. +.....++.++..++.++    
T Consensus        53 sy~tPyl~~lGvphk~~---S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~l  129 (498)
T KOG0637|consen   53 SYLTPYLQSLGVPHKWS---SIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLL  129 (498)
T ss_pred             ccccHHHHHcCCCcccc---cccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHh
Confidence            34556667788877666   666666667778889999999995    898887765 445555666666655432    


Q ss_pred             -------------hHHHHHHhhhhccccchhhhHHHHHHhcCCcccchh-HHHHHHHHHHHHHHHHHHHHhhc
Q 013992          123 -------------GALITGRVFVGLGVGMASMTSPLYISEASPAKIRGA-LVSTNGFLITSGQFLSYLINLAF  181 (432)
Q Consensus       123 -------------~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~-~~~~~~~~~~~g~~i~~~i~~~l  181 (432)
                                   ..++++.-+.=++.-.....+.+++.|...+++|.+ +.+++.....+|..+|..+++++
T Consensus       130 gd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~  202 (498)
T KOG0637|consen  130 GDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYL  202 (498)
T ss_pred             cCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccccc
Confidence                         233444444455666788889999999998777766 99999999999999998888744

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.80  E-value=1.6e-07  Score=90.37  Aligned_cols=135  Identities=16%  Similarity=0.155  Sum_probs=109.1

Q ss_pred             HHHHHHHHHHHHHHHHhhh----hhhcc-ccchHHH--HHHHHHHHHHHHHHHH---------hCChhHHHHHHhhhhcc
Q 013992           72 ESIVSMAVAGAIIGAAIGG----WMNDR-FGRRTSI--LVADFLFFVGAVIMAA---------APNPGALITGRVFVGLG  135 (432)
Q Consensus        72 ~~~~s~~~~~~~i~~~~~g----~l~dr-~Grr~~l--~~~~~~~~~~~~~~~~---------~~~~~~~~~~r~l~G~~  135 (432)
                      +++.+...+...+.+++..    ++.|| .+.+...  .+|.++.+++.+..++         ..|++.++...++.++|
T Consensus       315 ~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~g  394 (475)
T TIGR00924       315 IWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLG  394 (475)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHH
Confidence            6788888888888887755    45554 3334433  7788888888877764         46899999999999999


Q ss_pred             ccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHHHHHHHHHh
Q 013992          136 VGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILML  207 (432)
Q Consensus       136 ~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~  207 (432)
                      .....|...+++.|..|++.||++++++.....+|..+++.+.....+..+ |...|...++..++..++.+
T Consensus       395 e~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  465 (475)
T TIGR00924       395 ELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQG-VTGVFGKIGLVTLLVGVVMA  465 (475)
T ss_pred             HHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-hhhHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998887766655 88888887776666555533

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.79  E-value=8.1e-09  Score=93.44  Aligned_cols=178  Identities=16%  Similarity=0.100  Sum_probs=131.4

Q ss_pred             HHHHHHHHhhcccceeccccchhhhhhhhccccchhhhHH-----HHHHHHHH-HHHHHHHHHhhhhhhccccchHHHHH
Q 013992           31 RLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLL-----QESIVSMA-VAGAIIGAAIGGWMNDRFGRRTSILV  104 (432)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-----~~~~~s~~-~~~~~i~~~~~g~l~dr~Grr~~l~~  104 (432)
                      +.++..+...|+.-......+.....+.+.++..+.+...     ......+. ..++..+-.+...+.|+.|||+..+.
T Consensus       304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~  383 (538)
T KOG0252|consen  304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM  383 (538)
T ss_pred             HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence            5666777777776666666777777888877765544322     11122222 22334466677889999999999999


Q ss_pred             HHHHHHHHHHHHHHhCC--------hhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHH
Q 013992          105 ADFLFFVGAVIMAAAPN--------PGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYL  176 (432)
Q Consensus       105 ~~~~~~~~~~~~~~~~~--------~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~  176 (432)
                      +.+++++..+..+...|        ...+.+..++.-+|-+   .....+.+|.||.+.|+..-|+..+..-.|.+++..
T Consensus       384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn---~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~  460 (538)
T KOG0252|consen  384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPN---ATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAF  460 (538)
T ss_pred             hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCC---ceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHH
Confidence            99999999999888766        1222333333334332   334456799999999999999999999999999999


Q ss_pred             HHhhccC-----CCCchHHHHHhhHHHHHHHHHHHhhcCCC
Q 013992          177 INLAFTR-----APGTWRWMLGVAGIPALLQFILMLLLPES  212 (432)
Q Consensus       177 i~~~l~~-----~~~~wr~~f~~~~~~~~~~~~~~~~~~e~  212 (432)
                      .-.++.+     ..+ -|+.|++.+...++..+..+++||+
T Consensus       461 ~F~~~t~~~yp~~~g-~~~v~~i~~~~~~~gi~~T~l~pEt  500 (538)
T KOG0252|consen  461 GFLYLTDHNYPPNIG-VRNVFIILAGCMLLGILFTLLIPET  500 (538)
T ss_pred             HhhHhhhccCCcccc-chHHHHHHHHHHHHhHheeEEeecc
Confidence            9888888     445 8999999999999999888899998

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.78  E-value=8.9e-11  Score=112.63  Aligned_cols=160  Identities=17%  Similarity=0.192  Sum_probs=101.8

Q ss_pred             cccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHH--H---hCC-
Q 013992           48 GVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMA--A---APN-  121 (432)
Q Consensus        48 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~--~---~~~-  121 (432)
                      .......+.+.++.+.++...     ......+...++.++...+.||+|||+.++.+..+.+++.+..+  .   .++ 
T Consensus       270 ~~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~  344 (451)
T PF00083_consen  270 NFIFYYSPSIFENAGISNSFL-----ATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSS  344 (451)
T ss_pred             ccccccccccccccccccccc-----cccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            344455567777776665511     11222344556666777999999999999999998888877664  1   111 


Q ss_pred             ----hhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHH
Q 013992          122 ----PGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGI  197 (432)
Q Consensus       122 ----~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~  197 (432)
                          ...+...............+....+..|.+|.+.|+++.++......++..+++.+...+.+..+.+.......++
T Consensus       345 ~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~  424 (451)
T PF00083_consen  345 SWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGV  424 (451)
T ss_pred             cccccccceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHH
Confidence                2222222211111222344666678899999999999999998888888888888877777654423333333334


Q ss_pred             HHHHHHHHHhhcCCC
Q 013992          198 PALLQFILMLLLPES  212 (432)
Q Consensus       198 ~~~~~~~~~~~~~e~  212 (432)
                      ..+...+.++++||+
T Consensus       425 ~~i~~i~~~~~lpET  439 (451)
T PF00083_consen  425 CLIAIIFVYFFLPET  439 (451)
T ss_pred             HHHHHhheeEEEeeC
Confidence            444444558889999

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.75  E-value=1.7e-07  Score=87.06  Aligned_cols=137  Identities=17%  Similarity=0.224  Sum_probs=102.9

Q ss_pred             eccccchhhhhhhhc-cccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHhC--Ch
Q 013992           46 DTGVISGALLYIRDD-FKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAP--NP  122 (432)
Q Consensus        46 ~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~  122 (432)
                      .....+....+..+. +|.++...   .+.......+..++.+++.++.+|+|+|+++..+.++..++.++.-+.+  +.
T Consensus       251 ~~~i~~s~~~yy~~y~lg~~~l~~---~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~  327 (467)
T COG2211         251 AFNIRGSIMVYYVTYVLGDPELFA---YLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSV  327 (467)
T ss_pred             HHHHHhhhhheeEEEEcCChHHHH---HHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcch
Confidence            334444444444332 33333333   5566666677777799999999999999999999999999999888876  77


Q ss_pred             hHHHHHHhhhhccccchhhhHHHHHHhcCCc------cc-chhHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 013992          123 GALITGRVFVGLGVGMASMTSPLYISEASPA------KI-RGALVSTNGFLITSGQFLSYLINLAFTRAP  185 (432)
Q Consensus       123 ~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~------~~-R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~  185 (432)
                      ...++..++.+++.+...+...++++|..+-      ++ -|...+......-+|.+++..+.++.....
T Consensus       328 ~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~  397 (467)
T COG2211         328 VLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAI  397 (467)
T ss_pred             HHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            8888888999999999999999998776532      22 277788888888888888888777776543

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.73  E-value=1.5e-07  Score=88.79  Aligned_cols=123  Identities=7%  Similarity=-0.117  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhhccccchhhhHHHHHHhcC
Q 013992           72 ESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEAS  151 (432)
Q Consensus        72 ~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~  151 (432)
                      +...+.+..+..++.++.+++.||+++|+++.++.++..+..++..+.++... ...-.+.|++.+..+|...+...+..
T Consensus       272 ~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~-~~~l~~~glf~s~~fp~i~sl~~~~~  350 (410)
T TIGR00885       272 ANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVG-LYCLTLCSAFMSLMFPTIYGIALKGL  350 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHH-HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            44556666788899999999999999999999999999998888888777544 56677888999999999999999999


Q ss_pred             CcccchhHHHHHHHHHHHHHHHHHHHHhhccCCC-----CchHHHHHhhHH
Q 013992          152 PAKIRGALVSTNGFLITSGQFLSYLINLAFTRAP-----GTWRWMLGVAGI  197 (432)
Q Consensus       152 ~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~-----~~wr~~f~~~~~  197 (432)
                      +++.+.-+..+..  ..+|.++.|++.|++.|..     ++.+..|++..+
T Consensus       351 g~~~~~~s~~l~~--~~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~  399 (410)
T TIGR00885       351 GQDTKYGAAGLVM--AIIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLL  399 (410)
T ss_pred             hhhhhhhHHHHHH--HHhccchHHHHHHHHHHHhcccccCccchHHHHHHH
Confidence            8765433333333  3389999999999999943     236677765443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.70  E-value=3.2e-06  Score=78.68  Aligned_cols=253  Identities=15%  Similarity=0.086  Sum_probs=155.0

Q ss_pred             HHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcc
Q 013992           75 VSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAK  154 (432)
Q Consensus        75 ~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~  154 (432)
                      .++....+.+++++.+.+.|+.|.|+.+.++...+....+..-+ .|-+-++++-.+.|+|.+..+.....+++|..+++
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~  134 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE  134 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence            56677778899999999999999999999999998877665555 45667788899999999999999999999999999


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHhhccCCCC--------chHHH----------HHhhHHH---HHHHHHHHhhcCCCH
Q 013992          155 IRGALVSTNGFLITSGQFLSYLINLAFTRAPG--------TWRWM----------LGVAGIP---ALLQFILMLLLPESP  213 (432)
Q Consensus       155 ~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~--------~wr~~----------f~~~~~~---~~~~~~~~~~~~e~~  213 (432)
                      .+.+..++.......+.++|..+...+.....        +-|+.          ..+.+++   ..+..+...+.|...
T Consensus       135 tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~p~~~  214 (461)
T KOG3098|consen  135 TIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFLPSKD  214 (461)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeecCccc
Confidence            99999999888777777777665544432211        11111          1111111   111111222222210


Q ss_pred             HHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhHHHhhcccchhHHHHHHHHHHHHhhhcchH
Q 013992          214 RWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGIN  293 (432)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (432)
                       .      ..+.                        +.. ++...+..+...+++++++........+...+     ...
T Consensus       215 -~------~~~~------------------------~~~-~~~~~~~l~~~~~l~~~~~ml~L~~~f~~tG~-----~~S  257 (461)
T KOG3098|consen  215 -V------VNCK------------------------SSS-ETSFSELLKLTFKLLKTPKMLLLFPFFFYTGL-----ETS  257 (461)
T ss_pred             -h------hhhh------------------------hhc-cccHHHHHHHHHHHhcCHhHHHHHHHHHHHHH-----HHH
Confidence             0      0000                        000 00111112344566777766443333222211     112


Q ss_pred             HHHHhHHHHH--H-HcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh---hCCchhhHhHHHHHHHHHHHHHHHHhc
Q 013992          294 TVMYYSPTIV--Q-LSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDR---TGRKKLLVISLSGVILSLGVLSAVFHE  365 (432)
Q Consensus       294 ~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (432)
                      ......|..+  . .....+....+......+++.+++....+.+.||   +|+++.+.++..+..+.+++.-...+.
T Consensus       258 f~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~  335 (461)
T KOG3098|consen  258 FWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPN  335 (461)
T ss_pred             HHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccc
Confidence            2222222222  2 3344555666777777788888888888888876   467888888887777777666655543

>TIGR00788 fbt folate/biopterin transporter

Probab=98.69  E-value=2.2e-07  Score=89.08  Aligned_cols=150  Identities=13%  Similarity=0.173  Sum_probs=116.9

Q ss_pred             hccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHH----------hCChhHHHHH
Q 013992           59 DDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAA----------APNPGALITG  128 (432)
Q Consensus        59 ~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~----------~~~~~~~~~~  128 (432)
                      +.+|.++...   |.......++..++....+++.+|++.|+++.++.++.+++.+....          .++.+.+...
T Consensus       281 ~~lG~s~~~~---G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~  357 (468)
T TIGR00788       281 QCLPGGPSFS---GMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGD  357 (468)
T ss_pred             ccCCCCcchh---hhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeeh
Confidence            4678888888   98999999999999999999999999999999999999888755431          1333445556


Q ss_pred             HhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCC------chHHHHHhhH-HHHHH
Q 013992          129 RVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPG------TWRWMLGVAG-IPALL  201 (432)
Q Consensus       129 r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~------~wr~~f~~~~-~~~~~  201 (432)
                      -++.+++.+....+...++.+..|+++++...++.....++|..+++.+++.+.+..+      +.++..+... +..++
T Consensus       358 ~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~  437 (468)
T TIGR00788       358 SIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLL  437 (468)
T ss_pred             hHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHH
Confidence            6788888888888899999999999999999999999999999999999998887644      2233332222 33333


Q ss_pred             HHHHHhhcCC
Q 013992          202 QFILMLLLPE  211 (432)
Q Consensus       202 ~~~~~~~~~e  211 (432)
                      .+....++|+
T Consensus       438 ~l~~~~llP~  447 (468)
T TIGR00788       438 PLPLLHLLPR  447 (468)
T ss_pred             HHHHHHhCCC
Confidence            3334456785

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.68  E-value=7.3e-07  Score=83.97  Aligned_cols=124  Identities=19%  Similarity=0.121  Sum_probs=92.7

Q ss_pred             hhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHH-HHHHHHHH--hCChhHHHHHHhhhh
Q 013992           57 IRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFF-VGAVIMAA--APNPGALITGRVFVG  133 (432)
Q Consensus        57 i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~-~~~~~~~~--~~~~~~~~~~r~l~G  133 (432)
                      +.+.+|.+..+.   ++......++..++.++.+++.||++++..........+ +.......  ..+.+.+.+..++.|
T Consensus       234 ~~~~~g~~~~~~---~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (394)
T PRK11652        234 MGAVLGLSSMTV---SILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFF  310 (394)
T ss_pred             HHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence            334477777776   888888888999999999999999984433322222222 22222222  245667778889999


Q ss_pred             ccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCC
Q 013992          134 LGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRA  184 (432)
Q Consensus       134 ~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~  184 (432)
                      ++.+...+....+..|.+| ++++...++.+....+|..+++.+++.+.+.
T Consensus       311 ~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~  360 (394)
T PRK11652        311 FGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQT  360 (394)
T ss_pred             HHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            9999999999999999987 5689999999999999999999999888665

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.68  E-value=3.9e-07  Score=88.18  Aligned_cols=134  Identities=13%  Similarity=0.134  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHHHHHHHhh----hhhhccccchHHHHHHHHHHHHHHHHHHHhCC---------hhHHHHHHhhhhccccc
Q 013992           72 ESIVSMAVAGAIIGAAIG----GWMNDRFGRRTSILVADFLFFVGAVIMAAAPN---------PGALITGRVFVGLGVGM  138 (432)
Q Consensus        72 ~~~~s~~~~~~~i~~~~~----g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~---------~~~~~~~r~l~G~~~~~  138 (432)
                      ++..++..+...+..++.    +++.||++.++.+.+|.++.+++.+..+...+         .++++..++++|+|+..
T Consensus       319 ~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~  398 (500)
T PRK09584        319 EQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELM  398 (500)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHH
Confidence            555666665555555554    77788888888899999999999888776644         46788899999999999


Q ss_pred             hhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccC------C---CCchHHHHHhhHHHHHHHHHH
Q 013992          139 ASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTR------A---PGTWRWMLGVAGIPALLQFIL  205 (432)
Q Consensus       139 ~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~------~---~~~wr~~f~~~~~~~~~~~~~  205 (432)
                      ..|...+++.+..|++.||+++|.+..+..+|..++..+......      .   .++..+.|...++.+++..++
T Consensus       399 ~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~  474 (500)
T PRK09584        399 ISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVL  474 (500)
T ss_pred             HhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999888887887777666643221      0   112567777777666554444

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=98.66  E-value=4.2e-06  Score=77.95  Aligned_cols=327  Identities=11%  Similarity=-0.009  Sum_probs=164.5

Q ss_pred             HHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHH------h--C----ChhHHHHHHhh---hhccccch-h
Q 013992           77 MAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAA------A--P----NPGALITGRVF---VGLGVGMA-S  140 (432)
Q Consensus        77 ~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~------~--~----~~~~~~~~r~l---~G~~~~~~-~  140 (432)
                      .-.+...+..+..|.+.||..|.++...+.+..-++..+.+.      .  +    +.+....+..+   .|.-.-.. .
T Consensus        46 ~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~  125 (432)
T PF06963_consen   46 VRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASI  125 (432)
T ss_pred             HHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence            334456677888999999999999988777666544433321      1  1    12222222222   11111111 1


Q ss_pred             hhHHHHHHhcC------CcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHHHHHHHH-Hhhc----
Q 013992          141 MTSPLYISEAS------PAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFIL-MLLL----  209 (432)
Q Consensus       141 ~~~~~~i~~~~------~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~~~~~~~-~~~~----  209 (432)
                      ....+.=.||.      +++.+.+..+...-.--+..+++|++.+.+.+..+ .+....+.+...++..++ ++++    
T Consensus       126 ~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s-~~~~~~~i~~~N~~S~~vEy~~l~~VY  204 (432)
T PF06963_consen  126 ANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFAS-PVIAAIFIAGWNLASVFVEYFLLARVY  204 (432)
T ss_pred             hhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11111223443      23334555666666666788999999999988776 888888888777777776 5544    


Q ss_pred             CCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhHHHhhcccchhHHHHHHHHHHHHhhh
Q 013992          210 PESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQF  289 (432)
Q Consensus       210 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (432)
                      .+.|.-..++++.++.......  ...+ +.......+.    .++.-+.....++..++++.+....-. .++++    
T Consensus       205 ~~~P~L~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~----~~~~~~~~~~~w~~Y~~q~vflas~al-alLY~----  272 (432)
T PF06963_consen  205 NSVPALAVKKRSSESESSSDEE--SSSE-SSSDPSILKR----LWNPLRTIIRGWRTYFRQPVFLASFAL-ALLYF----  272 (432)
T ss_pred             HhChHhcCCCCCcccccccccc--cccc-ccchhhHHHH----HHHHHHHHhccHHHHHhCHHHHHHHHH-HHHHH----
Confidence            2223211111111111000000  0000 0000000000    001111113345566666655432222 22221    


Q ss_pred             cchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhhHhHHHHHHHHHHHHHHHHhccCCC
Q 013992          290 VGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSH  369 (432)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (432)
                       ....+......|+...+. ++...+..-....+.++.++++..++.+|+|..+.-..+...-..+..+...........
T Consensus       273 -TVLsf~~lmt~yl~~~G~-s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~  350 (432)
T PF06963_consen  273 -TVLSFGGLMTAYLKSQGY-SPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSP  350 (432)
T ss_pred             -HHhcCcHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence             122233345567777754 477778888888999999999999999999988776666655544443333222221111


Q ss_pred             --CCccchhccccc-cccccccc-ccccccCccchhhhhccCCCCcccccccccc
Q 013992          370 --SPMVSAVETSHF-SNLTCPDY-SSAATADRWDCMKCLKASSPDCGFCASHSNK  420 (432)
Q Consensus       370 --~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~g~~~~~~~~  420 (432)
                        ......++.+.. .-...-.+ .......++.+|++.|++  -.|+-.+..+.
T Consensus       351 ~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~--v~gvq~sl~~l  403 (432)
T PF06963_consen  351 FSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGA--VSGVQNSLQSL  403 (432)
T ss_pred             chhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhH--HHHHHHHHHHH
Confidence              111112222211 11111011 122245556777799999  77776655443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.65  E-value=4.4e-08  Score=90.48  Aligned_cols=165  Identities=15%  Similarity=0.169  Sum_probs=138.0

Q ss_pred             cccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHhC
Q 013992           41 LLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAP  120 (432)
Q Consensus        41 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~  120 (432)
                      ++.+.....+...+-.-.+|.+..+.-.   |........|-.+.-++.+++..|+|+-+++..++.+..+=.+..+..+
T Consensus       381 v~mG~g~~lv~tFLfWHled~~~~~~Lf---Gv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~  457 (618)
T KOG3762|consen  381 VVMGAGVGLVFTFLFWHLEDLGGIKTLF---GVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQ  457 (618)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCcceee---eehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhc
Confidence            3344444444444444456777555555   7777888888888889999999999999999999999999999999999


Q ss_pred             ChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHH-HHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHH
Q 013992          121 NPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGF-LITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPA  199 (432)
Q Consensus       121 ~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~-~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~  199 (432)
                      |.|+.+-..+++|+..+..+....+|+++..|++-|..+.++... ..++|--+|.++++.+.+..+ =|..|.+.++.+
T Consensus       458 n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg-~~ttf~~~giAc  536 (618)
T KOG3762|consen  458 NPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFG-ARTTFRIFGIAC  536 (618)
T ss_pred             CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeeh-hHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998764 477889999999999999987 899999998888


Q ss_pred             HHHHHHHhhc
Q 013992          200 LLQFILMLLL  209 (432)
Q Consensus       200 ~~~~~~~~~~  209 (432)
                      ++.+++...+
T Consensus       537 l~~l~~~~~i  546 (618)
T KOG3762|consen  537 LVTLALFISI  546 (618)
T ss_pred             HHHHHHHHHh
Confidence            7777665554

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.64  E-value=1.5e-07  Score=65.20  Aligned_cols=81  Identities=14%  Similarity=0.061  Sum_probs=75.3

Q ss_pred             cceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHhCCh
Q 013992           43 FGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNP  122 (432)
Q Consensus        43 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~  122 (432)
                      .++.+..++|.+|.+.+|.+++..+.   +++.+.+.+||.+|.+...++.++..+++.+..+++...+..+.+++.++.
T Consensus         4 mGigRFayTplLP~M~~~~~ls~~~a---g~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~   80 (85)
T PF06779_consen    4 MGIGRFAYTPLLPLMQADGGLSLSQA---GWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSF   80 (85)
T ss_pred             hhhHHHHHHhHhHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhch
Confidence            46778889999999999999999999   999999999999999999999999999999999999999999999999988


Q ss_pred             hHHH
Q 013992          123 GALI  126 (432)
Q Consensus       123 ~~~~  126 (432)
                      +.+.
T Consensus        81 ~~w~   84 (85)
T PF06779_consen   81 WLWS   84 (85)
T ss_pred             HHHh
Confidence            7653

Note that many members are hypothetical proteins.

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.63  E-value=1.3e-06  Score=79.00  Aligned_cols=149  Identities=15%  Similarity=0.252  Sum_probs=120.5

Q ss_pred             hhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhc-cccchHHHHHHHHHHHHHHHHH---HHhCChhHHHHHHh
Q 013992           55 LYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMND-RFGRRTSILVADFLFFVGAVIM---AAAPNPGALITGRV  130 (432)
Q Consensus        55 ~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d-r~Grr~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~r~  130 (432)
                      |+=.+-||++..+.   ..+......|..++....|++.. |.++|+.-.+++....++..+.   +...+.+.+...-+
T Consensus       233 Pygg~Vfgmsv~eT---T~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~  309 (403)
T PF03209_consen  233 PYGGEVFGMSVGET---TRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVF  309 (403)
T ss_pred             CchhHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence            44456689998888   78889999999999999998887 7788888778887777776654   44578899999999


Q ss_pred             hhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCC---------CchHHHHHhhHHHHHH
Q 013992          131 FVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAP---------GTWRWMLGVAGIPALL  201 (432)
Q Consensus       131 l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~---------~~wr~~f~~~~~~~~~  201 (432)
                      +.|++.|.......+...|..++++.|..+|.+...+.....++..+++.+.|..         ..+..+|.+.++..++
T Consensus       310 l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~  389 (403)
T PF03209_consen  310 LLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLA  389 (403)
T ss_pred             HHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998776631         1355667766665555


Q ss_pred             HHHHH
Q 013992          202 QFILM  206 (432)
Q Consensus       202 ~~~~~  206 (432)
                      ...+.
T Consensus       390 a~~ll  394 (403)
T PF03209_consen  390 ALVLL  394 (403)
T ss_pred             HHHHH
Confidence            55443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK11462 putative transporter; Provisional

Probab=98.61  E-value=1.3e-06  Score=83.78  Aligned_cols=113  Identities=13%  Similarity=0.112  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHhCC--hhHHHHHHhhhhccccchhhhHHHHHHh
Q 013992           72 ESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPN--PGALITGRVFVGLGVGMASMTSPLYISE  149 (432)
Q Consensus        72 ~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~r~l~G~~~~~~~~~~~~~i~~  149 (432)
                      +.+.+.+.++..++.+++++++||+|+|+++..+..+..+..++..+.++  ...+.+.-++.|++.+...+...++++|
T Consensus       266 ~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad  345 (460)
T PRK11462        266 VAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSD  345 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55677788888899999999999999999887665555444444333332  2234445566777777666666677777


Q ss_pred             cCC-------cccchhHHHHHHHHHHHHHHHHHHHHhhccCC
Q 013992          150 ASP-------AKIRGALVSTNGFLITSGQFLSYLINLAFTRA  184 (432)
Q Consensus       150 ~~~-------~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~  184 (432)
                      ..+       .+..|..++......-+|..+++.+++.+.+.
T Consensus       346 ~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~  387 (460)
T PRK11462        346 TVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAY  387 (460)
T ss_pred             hHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            665       22225556777778888888888887776543

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.58  E-value=1.4e-06  Score=84.88  Aligned_cols=172  Identities=17%  Similarity=0.053  Sum_probs=103.4

Q ss_pred             HHHhhcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHH
Q 013992           36 AGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVI  115 (432)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~  115 (432)
                      +.+..+.+...........+.+.+..+.+...    .+......+...++..+...+.||+|||+.++.+...+.++.++
T Consensus       300 ~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~----~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~  375 (513)
T KOG0254|consen  300 LLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT----FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVI  375 (513)
T ss_pred             HHHHHHHHHhCCceEEeehHHHHHhcCCCCch----HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHH
Confidence            33333333344455555667777777665432    22333344455666677799999999999999999999999988


Q ss_pred             HHHhC----C---------hhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhcc
Q 013992          116 MAAAP----N---------PGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFT  182 (432)
Q Consensus       116 ~~~~~----~---------~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~  182 (432)
                      .+...    +         ...+...-+..........+....+.+|.+|.+.|+++.++......+...+-......+.
T Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~  455 (513)
T KOG0254|consen  376 LAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFIT  455 (513)
T ss_pred             HHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            76531    1         1112222222233333345566678899999999999999877666555544333333333


Q ss_pred             CCCCchHHHHHhhHHHHHHHH--HHHhhcCCC
Q 013992          183 RAPGTWRWMLGVAGIPALLQF--ILMLLLPES  212 (432)
Q Consensus       183 ~~~~~wr~~f~~~~~~~~~~~--~~~~~~~e~  212 (432)
                      +..+ +...|...+..+.+..  ..++++||+
T Consensus       456 ~~~~-~~~~f~~f~~~~~~~~~~fv~~~~pET  486 (513)
T KOG0254|consen  456 EALG-IGGTFGYFGGICLLSLIIFVFFFVPET  486 (513)
T ss_pred             Hhcc-ccchHHHHHHHHHHHHHHHheEEcccC
Confidence            3322 3445555444444443  357788999

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.54  E-value=1.1e-07  Score=84.67  Aligned_cols=159  Identities=16%  Similarity=0.180  Sum_probs=119.2

Q ss_pred             ccccchhhhh-hhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhcccc--chHHHHHHHHHHHHHHHHHHHhCChh
Q 013992           47 TGVISGALLY-IRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFG--RRTSILVADFLFFVGAVIMAAAPNPG  123 (432)
Q Consensus        47 ~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G--rr~~l~~~~~~~~~~~~~~~~~~~~~  123 (432)
                      ....-|.++. +.+.+..+.-+.   |+..--..+.+.++..+.|.++||++  |-.....+++..++++....+++++.
T Consensus       286 lafLePtlslwm~e~m~~p~w~~---G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~  362 (464)
T KOG3764|consen  286 LAFLEPTLSLWMLETMFTPGWEV---GLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIA  362 (464)
T ss_pred             HHHhCcccHHHHHHhccCCCcce---eeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHH
Confidence            3334455554 445555333244   66666677889999999999999999  54455567777777777788999999


Q ss_pred             HHHHHHhhhhccccchhhhHHHHHHhcCCcc------cchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHH
Q 013992          124 ALITGRVFVGLGVGMASMTSPLYISEASPAK------IRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGI  197 (432)
Q Consensus       124 ~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~------~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~  197 (432)
                      ++++-++..|++.+.......-...+..+.+      .-|...++...++++|.++||.+++.+.+..| ++|...+.++
T Consensus       363 ~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iG-F~wl~~iig~  441 (464)
T KOG3764|consen  363 QLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIG-FEWLMTIIGI  441 (464)
T ss_pred             HHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehh-HHHHHHHHHH
Confidence            9999998888887776655555555554433      33678899999999999999999999999998 9999988888


Q ss_pred             HHHHHHHHHhhc
Q 013992          198 PALLQFILMLLL  209 (432)
Q Consensus       198 ~~~~~~~~~~~~  209 (432)
                      ..++...++..+
T Consensus       442 ~n~iyapvl~ll  453 (464)
T KOG3764|consen  442 LNLIYAPVLLLL  453 (464)
T ss_pred             HHHHHHHHHHHH
Confidence            887776664443

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.50  E-value=1.2e-06  Score=78.65  Aligned_cols=150  Identities=12%  Similarity=0.049  Sum_probs=117.6

Q ss_pred             ccccchhhhhhhhc-cccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHhCChhHH
Q 013992           47 TGVISGALLYIRDD-FKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGAL  125 (432)
Q Consensus        47 ~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~  125 (432)
                      .......++.+.+| .|.++.+.   +...+.+..+.++|.....++..|+...|.+.+..++..+.++..+++++...+
T Consensus       252 Eva~gsfl~~y~~~~~g~~~~~a---a~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~v~~  328 (422)
T COG0738         252 EVAIGSFLVSYLEELLGLNEQQA---AYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGVVAL  328 (422)
T ss_pred             HHHHHHHHHHHHHhcCCccHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcChHHH
Confidence            44455555655555 67788888   889999999999999999999999999999999998888888889999885544


Q ss_pred             HHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHHHHHH
Q 013992          126 ITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQF  203 (432)
Q Consensus       126 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~~~~~  203 (432)
                       .+-++.|+..+..+|...+...+..| + .....+..-....+|.++.|.+.|++.|..+ -...+....++|.+..
T Consensus       329 -~~l~~ig~F~simfPTIfslal~~l~-~-~ts~~s~~l~maivGGAiiP~l~G~i~d~~g-~~~~~~~~pllc~lyV  402 (422)
T COG0738         329 -YALFLIGLFNSIMFPTIFSLALKNLG-E-HTSVGSGLLVMAIVGGAIIPPLQGVIADMFG-IQLTFLIVPLLCYLYV  402 (422)
T ss_pred             -HHHHHHHHHhHHHHHHHHHHHHhccC-c-cccccceeeeeheecchHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHH
Confidence             45578899999999999999999998 3 3444444455667788999999999999887 6666654445555444

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.49  E-value=2.5e-07  Score=86.09  Aligned_cols=115  Identities=16%  Similarity=0.191  Sum_probs=81.1

Q ss_pred             hhhhh-hhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHh--C--ChhHHH
Q 013992           52 GALLY-IRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAA--P--NPGALI  126 (432)
Q Consensus        52 ~~~~~-i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~--~~~~~~  126 (432)
                      ...|. +.+.+|.+..+.   +.+.+...+...++.++.|+++||+|||+.+..+......+..+..+.  +  +.+...
T Consensus       246 ~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (366)
T TIGR00886       246 SIFAMFFKDQFGLSKVTA---GAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFI  322 (366)
T ss_pred             HHHHHHHHHHcCCcHHHH---HHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHH
Confidence            33444 445678887777   888888889999999999999999999988887777766666555442  2  454444


Q ss_pred             HHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHH
Q 013992          127 TGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSG  170 (432)
Q Consensus       127 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g  170 (432)
                      +.-.+.+++.|........++.|..| ++|+.+.|+.+....+|
T Consensus       323 ~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       323 VLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             HHHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence            44444444445455556667778877 57999999877765543

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.45  E-value=5.4e-06  Score=79.93  Aligned_cols=137  Identities=16%  Similarity=0.165  Sum_probs=104.4

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhccccchHH-------HHHHHHHHHHHHHHHH-----Hh-----CChhHHHHHHhhhhc
Q 013992           72 ESIVSMAVAGAIIGAAIGGWMNDRFGRRTS-------ILVADFLFFVGAVIMA-----AA-----PNPGALITGRVFVGL  134 (432)
Q Consensus        72 ~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~-------l~~~~~~~~~~~~~~~-----~~-----~~~~~~~~~r~l~G~  134 (432)
                      +++.+.+.+...+..++.+++.||+|+|+.       +.+|.++.+++.+..+     +.     .+++.++...+++|+
T Consensus       312 ~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~  391 (489)
T PRK10207        312 VSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSL  391 (489)
T ss_pred             HHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence            556667777787889999999999999973       6777777777664321     22     356777788899999


Q ss_pred             cccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCC---------CCchHHHHHhhHHHHHHHHHH
Q 013992          135 GVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRA---------PGTWRWMLGVAGIPALLQFIL  205 (432)
Q Consensus       135 ~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~---------~~~wr~~f~~~~~~~~~~~~~  205 (432)
                      |.+...+...+++.+..|++.++.+++++.....+|..++..++......         .++..+.|...++..++..++
T Consensus       392 Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~  471 (489)
T PRK10207        392 GELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVV  471 (489)
T ss_pred             HHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998888655321         112456677767666555555


Q ss_pred             Hhh
Q 013992          206 MLL  208 (432)
Q Consensus       206 ~~~  208 (432)
                      ++.
T Consensus       472 ~~~  474 (489)
T PRK10207        472 MAL  474 (489)
T ss_pred             HHH
Confidence            333

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.44  E-value=2.5e-06  Score=67.54  Aligned_cols=108  Identities=12%  Similarity=0.157  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhhccccchhhhHHHHHHhcCCc
Q 013992           74 IVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPA  153 (432)
Q Consensus        74 ~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~  153 (432)
                      -.++......+++++.+.+.+++|.|+.+++|.+.+.+-. ..-+-++.+.++.+-++.|++.+..+.....++.+..++
T Consensus        42 slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~-~~~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~  120 (156)
T PF05978_consen   42 SLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYI-ASFFYPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTE  120 (156)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH-HHHHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCH
Confidence            4455566677888889999999999999999999887544 334567888899999999999999999999999999999


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHhhcc
Q 013992          154 KIRGALVSTNGFLITSGQFLSYLINLAFT  182 (432)
Q Consensus       154 ~~R~~~~~~~~~~~~~g~~i~~~i~~~l~  182 (432)
                      ++|++-.+++......+.++|.++...+.
T Consensus       121 ~~~~~~~~ifw~i~~~s~i~G~~~~~~~~  149 (156)
T PF05978_consen  121 ETIGRNTGIFWAIFQSSLIFGNLFLFFIF  149 (156)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999988888888888877765543

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.34  E-value=1.5e-06  Score=82.26  Aligned_cols=173  Identities=14%  Similarity=0.084  Sum_probs=114.6

Q ss_pred             HHHHHHHhhcccceeccccchhhhhhh-hccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccc---------hHH
Q 013992           32 LAFSAGIGGLLFGYDTGVISGALLYIR-DDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGR---------RTS  101 (432)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Gr---------r~~  101 (432)
                      .+..+.+..+........+...+|... +-+|.+-.+.   |+..++..+...+..+++|.++||.-+         |..
T Consensus       259 ~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~---G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkif  335 (466)
T KOG2532|consen  259 PVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRET---GFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIF  335 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhh---hHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHH
Confidence            455566666666666666666677655 4577877888   999999999999999999999998755         222


Q ss_pred             HHHHHHHHHHHHHHHHHhCC--hhHHHHHH-hhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHH
Q 013992          102 ILVADFLFFVGAVIMAAAPN--PGALITGR-VFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLIN  178 (432)
Q Consensus       102 l~~~~~~~~~~~~~~~~~~~--~~~~~~~r-~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~  178 (432)
                      -.++....++..+..++.++  .+..+++. +..++ .|...+....-..|..| ++-+..+++.+....+...++|.+.
T Consensus       336 n~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~-~g~~~~Gf~~~~~~~ap-q~a~~l~g~~~~~~~~~~~~~P~~v  413 (466)
T KOG2532|consen  336 NTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGL-SGFNISGFYKNHQDIAP-QHAGFVMGIINFVGALAGFIAPLLV  413 (466)
T ss_pred             HhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHH-cccchhhhHhhhhhccc-hHHHHHHHHHHHHHHHHHHHHHHhe
Confidence            23444444555555555553  21122222 11222 12222223233344444 4579999999999999999999999


Q ss_pred             hhccCC--CCchHHHHHhhHHHHHHHHHHHhhc
Q 013992          179 LAFTRA--PGTWRWMLGVAGIPALLQFILMLLL  209 (432)
Q Consensus       179 ~~l~~~--~~~wr~~f~~~~~~~~~~~~~~~~~  209 (432)
                      +.+...  ..+||++|++.+.+.++..+.+.++
T Consensus       414 g~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f  446 (466)
T KOG2532|consen  414 GIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF  446 (466)
T ss_pred             eeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence            999852  2269999999998888877665554

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=98.31  E-value=1.6e-05  Score=69.76  Aligned_cols=272  Identities=11%  Similarity=0.073  Sum_probs=161.4

Q ss_pred             hhhhhh-hccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHhCChhHHHHHHhh
Q 013992           53 ALLYIR-DDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVF  131 (432)
Q Consensus        53 ~~~~i~-~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l  131 (432)
                      ..|++. .+-|++.++..  .-+.-...-.+.+.-.+.=.+.|..-.|++++.-.+.......+.-+.++.+.+=+.-++
T Consensus        27 ~tpyl~gp~~NlT~~~l~--~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~F  104 (433)
T KOG3810|consen   27 LTPYLLGPDKNLTEDQLT--NEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFF  104 (433)
T ss_pred             cchhccCCCCCccHHHHh--cccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhh
Confidence            334443 34455555432  222233334455666667778899988999888777777777788889999998888888


Q ss_pred             hhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCC-chHHHHHhhHHHHHHHHHHHhhcC
Q 013992          132 VGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPG-TWRWMLGVAGIPALLQFILMLLLP  210 (432)
Q Consensus       132 ~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~-~wr~~f~~~~~~~~~~~~~~~~~~  210 (432)
                      .|...+ ...+-.+++-+..+++++.++.+...+..-.|...|..++..+.+... +.+..-++......+.....+++|
T Consensus       105 yG~~tA-aEIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP  183 (433)
T KOG3810|consen  105 YGPATA-AEIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLP  183 (433)
T ss_pred             cChHHH-HHHhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCC
Confidence            888765 455667788888899999999999999999999999998888877532 234444444444445556677788


Q ss_pred             CCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhHHHhhcccchhHHHHHHHHHHHHhhhc
Q 013992          211 ESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFV  290 (432)
Q Consensus       211 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (432)
                      ..+|...-+.++++..  .......+. +.+..+..+       .....-..+..+..++|++..-.++..+     ..+
T Consensus       184 ~v~rSl~f~~~~~~~~--v~~~e~~~~-~~~~~~~l~-------~~~~~l~~~l~~~y~np~ll~WSlWwAl-----~sc  248 (433)
T KOG3810|consen  184 RVKRSLYFHRLEDKIS--VGDLEEMNP-QASYMSYLR-------GAFVLLWRDLQECYSNPRLLKWSLWWAL-----ASC  248 (433)
T ss_pred             CCchhhhhhcccccce--eccchhcCc-cchhhHHHH-------HHHHHHHHHHHHHhcCchhhhhHHHHHH-----hhc
Confidence            7765444333333211  000000000 000000000       0111112355677788887664444333     333


Q ss_pred             chHHHHHhHHHHHHHc-CCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCc
Q 013992          291 GINTVMYYSPTIVQLS-GFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRK  342 (432)
Q Consensus       291 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~  342 (432)
                      +++.+..|.-..=++. .......-|..-....+.++++.+..|++.-++.|.
T Consensus       249 g~~QV~nY~Q~LW~~~~~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~  301 (433)
T KOG3810|consen  249 GYYQVTNYTQILWKEVAPNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRW  301 (433)
T ss_pred             hhHHHHHHHHHHHHhhCCCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchh
Confidence            6666666554443333 222223334444555666788888889886655554

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=98.30  E-value=4.6e-05  Score=67.85  Aligned_cols=145  Identities=17%  Similarity=0.063  Sum_probs=85.7

Q ss_pred             hHHHHHHHHHHhhcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhc-----cccchHHH
Q 013992           28 YVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMND-----RFGRRTSI  102 (432)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d-----r~Grr~~l  102 (432)
                      .....+..+.+.+.+++.-.+... .+|.+.+.=|.+..+.   +...-++ .-+ -.-+++.++.|     |+||||.-
T Consensus        28 ~d~~~illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~---a~fS~ay-~P~-sLKllWaPiVDs~y~k~~GrrksW  101 (510)
T KOG3574|consen   28 GDRSSILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQ---AIFSFAY-WPF-SLKLLWAPIVDSVYSKRFGRRKSW  101 (510)
T ss_pred             hhhhhHHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhh---hhhhhhh-hHH-HHHHHHHhhhHHHHHHhhccccce
Confidence            334455556666788898888777 8899888666666555   3222211 111 23568889999     99999865


Q ss_pred             HH-HHHHHHHHHHHHHH-----------hCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHH
Q 013992          103 LV-ADFLFFVGAVIMAA-----------APNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSG  170 (432)
Q Consensus       103 ~~-~~~~~~~~~~~~~~-----------~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g  170 (432)
                      +. +..+.+..+.+.+.           .++...+....++.-+.++.--.+.-...-.+..+++-|.+......+...|
T Consensus       102 vvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~G  181 (510)
T KOG3574|consen  102 VVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAG  181 (510)
T ss_pred             eeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhh
Confidence            43 33333333333332           1233334344455555555555555556666777777777777666666666


Q ss_pred             HHHHHHHH
Q 013992          171 QFLSYLIN  178 (432)
Q Consensus       171 ~~i~~~i~  178 (432)
                      ..++..+-
T Consensus       182 yfL~~~if  189 (510)
T KOG3574|consen  182 YFLGNVVF  189 (510)
T ss_pred             HHhhccee
Confidence            55555443

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.30  E-value=1.4e-05  Score=75.81  Aligned_cols=141  Identities=11%  Similarity=0.044  Sum_probs=108.5

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhccccc-hHHHHHHHHHHHHHHHHHHHhCC---------------------hhHHHHHHh
Q 013992           73 SIVSMAVAGAIIGAAIGGWMNDRFGR-RTSILVADFLFFVGAVIMAAAPN---------------------PGALITGRV  130 (432)
Q Consensus        73 ~~~s~~~~~~~i~~~~~g~l~dr~Gr-r~~l~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~r~  130 (432)
                      +....+.+...+.+++..++.+|+|+ |++...+.++.+++.....+.++                     .+..++...
T Consensus       309 ~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  388 (477)
T TIGR01301       309 FGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFA  388 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHH
Confidence            44444555555777788889999995 77778898888888777765432                     366777888


Q ss_pred             hhhccccchhhhHHHHHHhcCCcc--cchhHHHHHHHHHHHHHHHHHHHHhhccCCCC-chHHHHHhhHHHHHHHHHH-H
Q 013992          131 FVGLGVGMASMTSPLYISEASPAK--IRGALVSTNGFLITSGQFLSYLINLAFTRAPG-TWRWMLGVAGIPALLQFIL-M  206 (432)
Q Consensus       131 l~G~~~~~~~~~~~~~i~~~~~~~--~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~-~wr~~f~~~~~~~~~~~~~-~  206 (432)
                      +.|+..+.....-.+++++..+++  +.|..+|+++.+..+.+++..+..+.+.+..+ +-.+.+.+.++..++..+. +
T Consensus       389 ~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~  468 (477)
T TIGR01301       389 ILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLAL  468 (477)
T ss_pred             HhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999954  45999999999999999999887777554433 3567888888888887777 6


Q ss_pred             hhcCCCH
Q 013992          207 LLLPESP  213 (432)
Q Consensus       207 ~~~~e~~  213 (432)
                      +.+|+++
T Consensus       469 ~~~~~~~  475 (477)
T TIGR01301       469 ILLPRPR  475 (477)
T ss_pred             HhCCCCC
Confidence            6677764

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.26  E-value=1.4e-05  Score=75.63  Aligned_cols=145  Identities=14%  Similarity=-0.025  Sum_probs=90.6

Q ss_pred             cchhhhhhh-hccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHH-----HhCChh
Q 013992           50 ISGALLYIR-DDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMA-----AAPNPG  123 (432)
Q Consensus        50 ~~~~~~~i~-~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~-----~~~~~~  123 (432)
                      .....|.+. +.+|.+..+.   ++.......+..++..+.+++.+|.++++.......+..++.++..     ..+++.
T Consensus       237 ~~~~~P~~l~~~~g~s~~~~---gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~  313 (413)
T PRK15403        237 WVAVSPVILIDAGGMTTSQF---AWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWL  313 (413)
T ss_pred             HHHhChHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHH
Confidence            333456554 4567887777   8777777778888888888876554444443332222223322222     123444


Q ss_pred             HHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHHH
Q 013992          124 ALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPAL  200 (432)
Q Consensus       124 ~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~~  200 (432)
                      ..++..++.++|.+...+......- .-....+|++.++.+.....+...++..++++.+..  =++.|...++.+.
T Consensus       314 ~~~~~~~l~~~G~~~~~p~~~~~al-~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~  387 (413)
T PRK15403        314 WSVLGTSLYAFGIGLIFPTLFRFTL-FSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFNG--GRLPFHLLAVVAG  387 (413)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHh-ccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CchHHHHHHHHHH
Confidence            4567788888888888777764332 222334799999998888888888999988887663  3455554444333

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=98.16  E-value=4.5e-06  Score=76.45  Aligned_cols=134  Identities=17%  Similarity=0.176  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhhccccchhhhHHHHHHhcC
Q 013992           72 ESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEAS  151 (432)
Q Consensus        72 ~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~  151 (432)
                      +.+.-+-.+-..+..+.+.+..+|+..+.=.....++..++.++.++++|.+.-+++-++.+++.|........+ +..+
T Consensus        62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~l-t~~y  140 (402)
T PF02487_consen   62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSL-THFY  140 (402)
T ss_pred             hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHH-HHhc
Confidence            334455556667777788888998875555566777888899999999999999999999999999888777776 4455


Q ss_pred             CcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCC-chHHHHHhhHHHHHHHHHHHh-hcCC
Q 013992          152 PAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPG-TWRWMLGVAGIPALLQFILML-LLPE  211 (432)
Q Consensus       152 ~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~-~wr~~f~~~~~~~~~~~~~~~-~~~e  211 (432)
                      ++    ...+.++.+.+.+.++|+..-..+.+ .+ +-|..+.+..++.++..+.++ .+|+
T Consensus       141 ~~----~~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~~  197 (402)
T PF02487_consen  141 GK----SSLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLPS  197 (402)
T ss_pred             Cc----cccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            54    34677778888888888887766666 32 247777777666555555544 4444

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.14  E-value=1.8e-05  Score=75.44  Aligned_cols=161  Identities=14%  Similarity=0.061  Sum_probs=101.3

Q ss_pred             HHHHHHHhhcccceeccccchhhhhhhhc-cccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhcc----ccchHHHHHHH
Q 013992           32 LAFSAGIGGLLFGYDTGVISGALLYIRDD-FKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDR----FGRRTSILVAD  106 (432)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr----~Grr~~l~~~~  106 (432)
                      .+...++..+......+.....+|.+.++ .|.+..+.   +.+...+.++.+++.+++|+++||    ..+|.......
T Consensus       274 ~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a---~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~  350 (495)
T KOG2533|consen  274 GVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQA---NLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFL  350 (495)
T ss_pred             hHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHh---ccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            34555666677777777788888988877 45777777   889999999999999999999999    77777777766


Q ss_pred             HHHHHHH-HHHHHhCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccc-hhHHHHHHHHHHHHHHHHHH-HHhhccC
Q 013992          107 FLFFVGA-VIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIR-GALVSTNGFLITSGQFLSYL-INLAFTR  183 (432)
Q Consensus       107 ~~~~~~~-~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R-~~~~~~~~~~~~~g~~i~~~-i~~~l~~  183 (432)
                      .++.+.. .......+.......-.....+.....+.+.....+......| -...+....+.+.+.++.+. ..+....
T Consensus       351 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap  430 (495)
T KOG2533|consen  351 CLYAIIGAISLLAAAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAP  430 (495)
T ss_pred             HHHHHHHHHHHHhhccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCc
Confidence            6665555 4444443344433333444444555566666677777765544 33344444444444444333 3333333


Q ss_pred             CCCchHHHHHhhH
Q 013992          184 APGTWRWMLGVAG  196 (432)
Q Consensus       184 ~~~~wr~~f~~~~  196 (432)
                      ... |.+.|....
T Consensus       431 ~y~-~~~~f~~~~  442 (495)
T KOG2533|consen  431 RYG-WGAVFYMLV  442 (495)
T ss_pred             chh-hhhHHHHHH
Confidence            334 777774443

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=98.09  E-value=0.0058  Score=56.99  Aligned_cols=155  Identities=11%  Similarity=0.017  Sum_probs=100.4

Q ss_pred             ChhHHHHHHHHHHhhcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHH-HHHHHHHhhhhhhccccchHHHHH
Q 013992           26 NPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVA-GAIIGAAIGGWMNDRFGRRTSILV  104 (432)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~-~~~i~~~~~g~l~dr~Grr~~l~~  104 (432)
                      +++.+..++.+.+..++..+..+    .+-.+.+.+..+........++-+...+ +..+..++..++.+++.|++++-.
T Consensus        22 ~r~E~~kflpl~Ll~f~I~~ny~----~lR~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~   97 (509)
T COG3202          22 RRYELKKFLPLALLFFCILFNYN----LLRSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYI   97 (509)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHH
Confidence            34455556666555555554333    4455666666554444333677777777 677888999999999999999988


Q ss_pred             HHHHHHHHHHHHHHh---------CC-----------------------hhHHHHHHhhhhccccchhh-hHHHHHHhcC
Q 013992          105 ADFLFFVGAVIMAAA---------PN-----------------------PGALITGRVFVGLGVGMASM-TSPLYISEAS  151 (432)
Q Consensus       105 ~~~~~~~~~~~~~~~---------~~-----------------------~~~~~~~r~l~G~~~~~~~~-~~~~~i~~~~  151 (432)
                      -+..+....+++++.         ++                       .|...+...+.=+-...... .-.....|.+
T Consensus        98 ~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeit  177 (509)
T COG3202          98 ILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEIT  177 (509)
T ss_pred             HHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            777777777777653         11                       01111111111111111111 2334567888


Q ss_pred             CcccchhHHHHHHHHHHHHHHHHHHHHhhccCC
Q 013992          152 PAKIRGALVSTNGFLITSGQFLSYLINLAFTRA  184 (432)
Q Consensus       152 ~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~  184 (432)
                      ..+|-.|..++++.+.+++..++..+..++.+.
T Consensus       178 t~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~  210 (509)
T COG3202         178 TIEEAKRFYPLFGLGANISLLLSGEVTSWLSKH  210 (509)
T ss_pred             hHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            888889999999999999999988888888764

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=98.09  E-value=5.2e-06  Score=79.13  Aligned_cols=127  Identities=10%  Similarity=-0.070  Sum_probs=82.9

Q ss_pred             chHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhh-CCchhhHhHHHHHHHHHHHHHHHHhccCCC
Q 013992          291 GINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRT-GRKKLLVISLSGVILSLGVLSAVFHETTSH  369 (432)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (432)
                      .++....++|.|+++..+.++.+++...........++.+++|+++||+ |||+.+.++..+..++..++....  ....
T Consensus        24 s~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~--~~~~  101 (493)
T PRK15462         24 SFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASE--IHPS  101 (493)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhh--cchh
Confidence            5677888899999887667788888888888888899999999999999 999999999888888776554321  1111


Q ss_pred             CCccchhcccccccccccccccccccCccchhhhhccCCCCcccccccccccc
Q 013992          370 SPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKVK  422 (432)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~g~~~~~~~~~~  422 (432)
                      ...+.......+.+...+.......+.+|.- ++.|.+  +.++.++..+...
T Consensus       102 ~~~l~l~li~iG~G~~~~~~~alv~elfp~~-~~~R~s--gf~i~Y~~~nlG~  151 (493)
T PRK15462        102 FLYLSLAIIVCGYGLFKSNVSCLLGELYEPT-DPRRDG--GFSLMYAAGNVGS  151 (493)
T ss_pred             HHHHHHHHHHHhcccccccHHHHHHHHCCCC-Cccccc--eehHHHHHHHHHH
Confidence            1111111111111222222334445666541 125888  8888887777543

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=98.06  E-value=0.0024  Score=60.88  Aligned_cols=153  Identities=12%  Similarity=0.046  Sum_probs=90.3

Q ss_pred             hhHHHHHHHHHHhhcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHH-HHHHHHHhhhhhhccccchHHHHHH
Q 013992           27 PYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVA-GAIIGAAIGGWMNDRFGRRTSILVA  105 (432)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~-~~~i~~~~~g~l~dr~Grr~~l~~~  105 (432)
                      +..+..+..+.+..++..+..+.    +-.+.+.+=.+...+.....+=....+ ...+...+..+++||++|++++-..
T Consensus        20 ~~E~~k~~~l~~m~f~i~f~y~~----lR~~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~   95 (491)
T PF03219_consen   20 RSELKKFLPLALMFFFILFNYTI----LRDLKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYII   95 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH----HHHhcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            44555555555555555544432    233333332222222222444443333 3445577899999999999998777


Q ss_pred             HHHHHHHHHHHHHh---------CC----------------------hhHHHHHHhhhhccccchhh-hHHHHHHhcCCc
Q 013992          106 DFLFFVGAVIMAAA---------PN----------------------PGALITGRVFVGLGVGMASM-TSPLYISEASPA  153 (432)
Q Consensus       106 ~~~~~~~~~~~~~~---------~~----------------------~~~~~~~r~l~G~~~~~~~~-~~~~~i~~~~~~  153 (432)
                      ...+.....++++.         ++                      .|.+.+..++.-+-.....+ .-..+..|.++.
T Consensus        96 ~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~  175 (491)
T PF03219_consen   96 IIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTV  175 (491)
T ss_pred             HHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence            76666666555542         11                      11111222222222222222 346678999999


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHhhccC
Q 013992          154 KIRGALVSTNGFLITSGQFLSYLINLAFTR  183 (432)
Q Consensus       154 ~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~  183 (432)
                      +|-.|..+++..+.++|.+++..+..++.+
T Consensus       176 ~eAKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  176 EEAKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998888887776

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.01  E-value=4.1e-05  Score=64.88  Aligned_cols=98  Identities=15%  Similarity=0.273  Sum_probs=74.3

Q ss_pred             cchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHhCChhHHHHHH
Q 013992           50 ISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGR  129 (432)
Q Consensus        50 ~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r  129 (432)
                      .+|.+.++-++++....+.   +.+....+...++...+.|-++|+-|||+.-+.-++.+.+++ +.-.++++-.++++|
T Consensus        56 QgPYvYyLYstYgFgkG~I---gqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC-iTKhSpqYkVLmVGR  131 (454)
T KOG4332|consen   56 QGPYVYYLYSTYGFGKGDI---GQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC-ITKHSPQYKVLMVGR  131 (454)
T ss_pred             cCceeeeeehhcCccCCcc---ceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH-HhhcCCceEEEeehh
Confidence            4566677778888877777   777777777778888899999999999997555444444433 344578899999999


Q ss_pred             hhhhccccchhhhHHHH-HHhcC
Q 013992          130 VFVGLGVGMASMTSPLY-ISEAS  151 (432)
Q Consensus       130 ~l~G~~~~~~~~~~~~~-i~~~~  151 (432)
                      .+-|+..+..+..-.++ +.|.-
T Consensus       132 ~LGGiaTsLLFSaFEsWliaEHn  154 (454)
T KOG4332|consen  132 VLGGIATSLLFSAFESWLIAEHN  154 (454)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHhh
Confidence            99999988887776654 66765

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.01  E-value=1.4e-05  Score=55.00  Aligned_cols=66  Identities=14%  Similarity=0.285  Sum_probs=53.8

Q ss_pred             cccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHH
Q 013992           41 LLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLF  109 (432)
Q Consensus        41 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~  109 (432)
                      +......+...|.+|...++.|.+..+.   |.+.++..+...++++++|.++||+++++..+....++
T Consensus        10 f~~f~~~g~~~Pfl~~~~~~~Gl~~~~i---Gil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~   75 (77)
T PF12832_consen   10 FFYFAALGCLYPFLPLYLKQLGLSPSQI---GILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM   75 (77)
T ss_pred             HHHHHHHHHHHhhhhHhhhhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence            3334445556677777778888988888   99999999999999999999999999999887766554

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=97.99  E-value=0.0002  Score=70.22  Aligned_cols=131  Identities=24%  Similarity=0.265  Sum_probs=98.3

Q ss_pred             HHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHhCChhH---HHHHHhhhhccccchhhhHHHHHHhcCCcccch
Q 013992           81 GAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGA---LITGRVFVGLGVGMASMTSPLYISEASPAKIRG  157 (432)
Q Consensus        81 ~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~  157 (432)
                      .........+...|++|||.....+..+..++.++.++..+...   ..+...+...+.+..+.....+..|.+|+..|.
T Consensus       362 ~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~  441 (521)
T KOG0255|consen  362 VELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRN  441 (521)
T ss_pred             HHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence            45555566689999999999999999999999999998765443   455555555666666677788999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHHHHHHHH-HhhcCCCH
Q 013992          158 ALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFIL-MLLLPESP  213 (432)
Q Consensus       158 ~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~~  213 (432)
                      .+.+..+....+|.+++|.+..........+....  .+....+..++ .+++||+.
T Consensus       442 ~~~~~~~~~~~~~~i~ap~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~lpet~  496 (521)
T KOG0255|consen  442 TAVGAISAAARLGSILAPLFPLLLRQMFPLLGLIL--FGWLALLLGLLSLLLLPETK  496 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHH--HHHHHHHHHHHHHhcCcccC
Confidence            99999999999999999998866654322232222  34444444444 58899983

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=97.98  E-value=2.5e-05  Score=72.75  Aligned_cols=148  Identities=13%  Similarity=0.067  Sum_probs=94.0

Q ss_pred             HhhcccchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhh
Q 013992          266 KLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLL  345 (432)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~  345 (432)
                      +++.+++.....+....+..     +...+.+++--++++.+.. +..-|......-.+.++..++.+++.+|+|+-+++
T Consensus       366 ~~~~s~~~llff~~av~mG~-----g~~lv~tFLfWHled~~~~-~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~  439 (618)
T KOG3762|consen  366 KVFASPHILLFFFVAVVMGA-----GVGLVFTFLFWHLEDLGGI-KTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVM  439 (618)
T ss_pred             HHhcCCCEEehhHHHHHHHH-----HHHHHHHHHHHHHhhcCCc-ceeeeehhhhhccchHHHHHHHHHHHHHhccccee
Confidence            56666665543333333322     5556666665567776644 45556777777888899999999999999999999


Q ss_pred             HhHHHHHHHHHHHHHHHHhccCCCCCccchhcccccccccccccccccccCccchhhhhccCCCCcccccccc-cccccc
Q 013992          346 VISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHS-NKVKGI  424 (432)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~g~~~~~~-~~~~g~  424 (432)
                      .++..+..+=++.+...   ++.|...-+-++-+...........+..+.+   .|+++|++  ++|+..... +...|+
T Consensus       440 ~lgLa~~~~Rf~~~S~L---~n~W~vLPieilqgit~aliWaa~~sY~s~v---aPp~l~at--~Q~l~~g~f~GlG~g~  511 (618)
T KOG3762|consen  440 YLGLACNVGRFLYYSYL---QNPWMVLPIEILQGITHALIWAAIISYASHV---APPGLRAT--AQGLLQGIFHGLGKGL  511 (618)
T ss_pred             eehhhHHHHHHHHHHHh---cCchheeeHHHHHHHHHHHHHHHHHHHHHhh---CCCcchHH--HHHHHHHHhcccCcch
Confidence            99888777766555443   4555555445555554444443333333444   44499999  888876544 555555


Q ss_pred             ccc
Q 013992          425 SAI  427 (432)
Q Consensus       425 ~a~  427 (432)
                      .++
T Consensus       512 Gsl  514 (618)
T KOG3762|consen  512 GSL  514 (618)
T ss_pred             hhh
Confidence            543

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=97.93  E-value=4.3e-05  Score=73.96  Aligned_cols=184  Identities=18%  Similarity=0.138  Sum_probs=125.9

Q ss_pred             HHHHHHhhcccceeccccchhhhhhhh-ccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchH-HHHHHHHHHH
Q 013992           33 AFSAGIGGLLFGYDTGVISGALLYIRD-DFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRT-SILVADFLFF  110 (432)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~-~l~~~~~~~~  110 (432)
                      +....+..++.+..........|.... -|+.+.......++....+.++..+++.+.|.+..+++|-| .++++.+++.
T Consensus       312 ~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~t  391 (599)
T PF06609_consen  312 FAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMT  391 (599)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHH
Confidence            344444455555555555566666543 34433321111267777888888899999999998877554 4456776666


Q ss_pred             HHHHHHHH--hCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccC-CC--
Q 013992          111 VGAVIMAA--APNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTR-AP--  185 (432)
Q Consensus       111 ~~~~~~~~--~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~-~~--  185 (432)
                      ++.-+.+.  .+|....+..-++.|++.|...........-..|+++-+.+.++....-.+|..+|..+..-+.. ..  
T Consensus       392 a~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~~n~~~~  471 (599)
T PF06609_consen  392 AFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIFTNKLPK  471 (599)
T ss_pred             HHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhH
Confidence            55444433  34666667778899999999888888888888899988999999888888887777665532221 00  


Q ss_pred             -------------C---------------------------------------------chHHHHHhhHHHHHHHHHHHh
Q 013992          186 -------------G---------------------------------------------TWRWMLGVAGIPALLQFILML  207 (432)
Q Consensus       186 -------------~---------------------------------------------~wr~~f~~~~~~~~~~~~~~~  207 (432)
                                   +                                             .+|++|+....++++.++..+
T Consensus       472 ~l~~~v~~a~~~aglp~~sl~~li~a~~~~~~~a~~~iPGit~~i~~a~~~A~~~aYa~ay~~V~~~siaFG~vaiiaa~  551 (599)
T PF06609_consen  472 ELPKYVAPAALAAGLPESSLPALIEALAAGNLEALAAIPGITPEIIAAVVAAFQEAYAHAYRYVYYSSIAFGVVAIIAAL  551 (599)
T ss_pred             hHHHHHHHHHHhcCCChhhHHHHHHHHhccChhHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                         0                                             478899998888999998888


Q ss_pred             hcCCCHHHH
Q 013992          208 LLPESPRWL  216 (432)
Q Consensus       208 ~~~e~~~~~  216 (432)
                      +++|..++.
T Consensus       552 fl~d~~~~m  560 (599)
T PF06609_consen  552 FLGDIDKYM  560 (599)
T ss_pred             HcCChHHhh
Confidence            888775543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.81  E-value=0.00027  Score=48.67  Aligned_cols=65  Identities=14%  Similarity=0.272  Sum_probs=53.5

Q ss_pred             HHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhhHhHHH
Q 013992          285 VFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLS  350 (432)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~  350 (432)
                      ++..+.+...+.-|.|.|+++.+.+ +.+.+.+..+..+..+++.++.|.++||.++++.......
T Consensus         9 yf~~f~~~g~~~Pfl~~~~~~~Gl~-~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~   73 (77)
T PF12832_consen    9 YFFYFAALGCLYPFLPLYLKQLGLS-PSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSL   73 (77)
T ss_pred             HHHHHHHHHHHHhhhhHhhhhcCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHH
Confidence            3455556778888999999986555 7888999999999999999999999999999887766544

>PTZ00207 hypothetical protein; Provisional

Probab=97.72  E-value=0.0008  Score=65.68  Aligned_cols=160  Identities=11%  Similarity=0.027  Sum_probs=110.4

Q ss_pred             chhhhhhhhcc-ccchhh-hHHHHHHHHHHHHHHHHHHHhhhhhhc---------cccchHHHHHHHHHHHHHHHHHHHh
Q 013992           51 SGALLYIRDDF-KSVDRK-TLLQESIVSMAVAGAIIGAAIGGWMND---------RFGRRTSILVADFLFFVGAVIMAAA  119 (432)
Q Consensus        51 ~~~~~~i~~~~-~~~~~~-~~~~~~~~s~~~~~~~i~~~~~g~l~d---------r~Grr~~l~~~~~~~~~~~~~~~~~  119 (432)
                      ..-+.+|.+.+ |.+.+. ..  ....+++.+++.+|.+..|.+..         |+.|--.+.+..+ +.++.++.++.
T Consensus       373 ~~N~~qI~~sl~g~~~~~~~~--~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~  449 (591)
T PTZ00207        373 IFNARFIYTALAGEAPDDALN--TLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLT  449 (591)
T ss_pred             eecHHHHHHHhcCCCCCccce--eeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHHH
Confidence            33445677777 552222 11  22677788888888888887761         1322223344444 77777777776


Q ss_pred             CChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHH-HHHHhhccCCC----C--------
Q 013992          120 PNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLS-YLINLAFTRAP----G--------  186 (432)
Q Consensus       120 ~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~-~~i~~~l~~~~----~--------  186 (432)
                      -....+.+.-++.|++.|..++.....++|.|. |+-|+-..+......+|..+- -.+.|.+.|..    +        
T Consensus       450 ~p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~  528 (591)
T PTZ00207        450 LPKAALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERV  528 (591)
T ss_pred             CCccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCce
Confidence            544789999999999999999999999999999 888988888888888888765 45666655431    1        


Q ss_pred             chHHHHHhhHHHHHHHHHHH-hhcCCCHH
Q 013992          187 TWRWMLGVAGIPALLQFILM-LLLPESPR  214 (432)
Q Consensus       187 ~wr~~f~~~~~~~~~~~~~~-~~~~e~~~  214 (432)
                      =.|..|++.+..++...++. ...-++.+
T Consensus       529 C~~~~~~v~~~~~~~g~~~s~~l~~R~r~  557 (591)
T PTZ00207        529 CVVMPLAFLLGLSFLAFITSTYVHLQYRR  557 (591)
T ss_pred             eeHhHHHHHHHHHHHHHHHHhheeeehHH
Confidence            15788888888888887773 33334433

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=97.72  E-value=0.00045  Score=65.45  Aligned_cols=126  Identities=15%  Similarity=0.156  Sum_probs=105.9

Q ss_pred             hhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhh-hhhccccchHHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhh
Q 013992           54 LLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGG-WMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFV  132 (432)
Q Consensus        54 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g-~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~  132 (432)
                      .-++...++.+..+.   +...+.......+++.+.. .+...+|-|++...|+....+..++.+++++.|+......+.
T Consensus       265 ~~yl~~~f~w~~~~~---s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~  341 (463)
T KOG2816|consen  265 LLYLKAKFGWNKKEF---SDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVV  341 (463)
T ss_pred             EEEEeeecCcCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHH
Confidence            345666788888888   7677777777777777666 788889999999999999999999999999999999888877


Q ss_pred             hccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccC
Q 013992          133 GLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTR  183 (432)
Q Consensus       133 G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~  183 (432)
                      ++. ....|...+.++.+.++++||+++++.+....+...+++.+-+.+..
T Consensus       342 ~~~-~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~  391 (463)
T KOG2816|consen  342 ALA-GIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFA  391 (463)
T ss_pred             Hhh-cchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHH
Confidence            765 44778888999999999999999999999999999998888776644

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=97.42  E-value=0.001  Score=62.03  Aligned_cols=109  Identities=19%  Similarity=0.347  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHh--C-Ch------hHHHHHHhhhhccccchhhhHHHHHHhcCCcc---cchhHHHHHHHHH
Q 013992          100 TSILVADFLFFVGAVIMAAA--P-NP------GALITGRVFVGLGVGMASMTSPLYISEASPAK---IRGALVSTNGFLI  167 (432)
Q Consensus       100 ~~l~~~~~~~~~~~~~~~~~--~-~~------~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~---~R~~~~~~~~~~~  167 (432)
                      |+++.+.+++.+|.++..++  + +.      ..+.++-.+.++|.|..=|....+.+|-++++   +|.+.+.++..+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            56788899999998884433  2 22      57888899999999999999999999999876   3567788899999


Q ss_pred             HHHHHHHHHHHhhccCCCCchHHHHHhhHHHHHHHHHHHhhc
Q 013992          168 TSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLLL  209 (432)
Q Consensus       168 ~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~  209 (432)
                      ++|..++..+.+++.+..+ |.+.|.+.++..++..+.++.-
T Consensus        82 n~G~~~~~~~~~~i~~~~~-~~~~f~i~~~~~~~~~~~f~~~  122 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNYG-WFLGFGIPAIGMLLALIVFLSG  122 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS--HHHHHHHHHHHHHHHHHHHHCC
T ss_pred             hhhhHhhcccchhhccccc-hhhhhhHHHHHHHHHHHHHHhC
Confidence            9999999999999988877 9999999998777777665543

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=97.39  E-value=0.01  Score=54.35  Aligned_cols=171  Identities=16%  Similarity=0.106  Sum_probs=80.9

Q ss_pred             cccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHh-
Q 013992           41 LLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAA-  119 (432)
Q Consensus        41 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-  119 (432)
                      +-.-..+..+..+.++..+++-..+.+..........-.+...+....-..+.-|. |+++.........+..+.+.++ 
T Consensus        28 iG~LlpWN~fiTa~~y~~~~~~~~~~~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~-~~~~~~~l~~~~il~i~~l~~~~  106 (406)
T KOG1479|consen   28 IGTLLPWNMFITASDYYYYRFPGYHNSKNFTSSYTLAAQIPLLLFNLLNAFLNTRL-RTRVGYLLSLIAILFIVTLDLAL  106 (406)
T ss_pred             cccccchHhhhccHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence            33445566667777777777654433332223333333444445555555666662 2222222211222222222221 


Q ss_pred             --------CChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHH
Q 013992          120 --------PNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWM  191 (432)
Q Consensus       120 --------~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~  191 (432)
                              ..+...++.-.+.+.+.+..........++ +|+|.-.-.++-.+.+..+-...--.......+...+=-..
T Consensus       107 v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~ytqavm~G~a~aG~l~Sl~~i~tka~~~~~~~sA~~y  185 (406)
T KOG1479|consen  107 VKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEYTQAVMSGQALAGTLTSLLRILTKAAFSDSRTSALIY  185 (406)
T ss_pred             hccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHHHHHHHhcchhHhHHHHHHHHHHHHhcCCCCceeehh
Confidence                    235556666777888877766665554444 46554433333222222222222222222222222223345


Q ss_pred             HHhhHHHHHHHHHHHhhcCCCH
Q 013992          192 LGVAGIPALLQFILMLLLPESP  213 (432)
Q Consensus       192 f~~~~~~~~~~~~~~~~~~e~~  213 (432)
                      |.+..+..+++.+++..+|+.|
T Consensus       186 F~~s~~~~llC~i~y~~l~~lp  207 (406)
T KOG1479|consen  186 FITSTVILLLCFVLYLVLPKLP  207 (406)
T ss_pred             HHHHHHHHHHHHHHHHHhhcch
Confidence            5555666667777777778776

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=97.34  E-value=0.0022  Score=59.94  Aligned_cols=133  Identities=17%  Similarity=0.121  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhccccch-------HHHHHHHHHHHHHHHHHHHh----------CChhHHHHHHhhhhc
Q 013992           72 ESIVSMAVAGAIIGAAIGGWMNDRFGRR-------TSILVADFLFFVGAVIMAAA----------PNPGALITGRVFVGL  134 (432)
Q Consensus        72 ~~~~s~~~~~~~i~~~~~g~l~dr~Grr-------~~l~~~~~~~~~~~~~~~~~----------~~~~~~~~~r~l~G~  134 (432)
                      ++..+...+...+.+|+..++-.+.++|       .=+-+++.+++.+.++....          .+.++++...+++++
T Consensus       327 ~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~  406 (498)
T COG3104         327 AWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSF  406 (498)
T ss_pred             HHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHH
Confidence            6777888888888888887777775544       12456666666666655443          257888999999999


Q ss_pred             cccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhcc------CCCCchHHHHHhhHHHHHHHHHH
Q 013992          135 GVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFT------RAPGTWRWMLGVAGIPALLQFIL  205 (432)
Q Consensus       135 ~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~------~~~~~wr~~f~~~~~~~~~~~~~  205 (432)
                      |.=+..|...++++...|++-.+..++.+......|+.++..+.+.-.      +.. .-...|+..+...++..+.
T Consensus       407 gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~-~~~~~F~~~g~v~i~~~~~  482 (498)
T COG3104         407 GELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAF-IEGRVFGTIGVVAIVIGIL  482 (498)
T ss_pred             HHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhh-hhhhhHHHHHHHHHHHHHH
Confidence            999999999999999999998899999888888877777776666322      111 2455666666665555544

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.33  E-value=0.0014  Score=58.97  Aligned_cols=123  Identities=12%  Similarity=0.096  Sum_probs=106.3

Q ss_pred             hhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhcccc--chHHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhhcc
Q 013992           58 RDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFG--RRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLG  135 (432)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G--rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~  135 (432)
                      .+.+|.++.|.   |-+.+...+...+.+....+..||..  -+-.+..++.++.=..++.+.++....+.++-.+-.+.
T Consensus       289 ~~rfg~ss~~~---G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~  365 (451)
T KOG2615|consen  289 HGRFGYSSMQQ---GKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFS  365 (451)
T ss_pred             cCccCCChhhh---eeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHH
Confidence            36688888887   88888888888888888999999987  77777788888777777888888888888888888888


Q ss_pred             ccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccC
Q 013992          136 VGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTR  183 (432)
Q Consensus       136 ~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~  183 (432)
                      .+...+....++....|+++||...|+......++-++||+++|.+..
T Consensus       366 ~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~  413 (451)
T KOG2615|consen  366 TASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFS  413 (451)
T ss_pred             HHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence            888888888899999999999999999999999999999999987764

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=97.29  E-value=0.0096  Score=55.74  Aligned_cols=143  Identities=16%  Similarity=0.085  Sum_probs=71.4

Q ss_pred             HHHHhhcccceeccccchhhhhhhhc--cccchhhhHHHHHHHHHHHHHHHHHHHhhhhhh-----ccccchHHHHH-HH
Q 013992           35 SAGIGGLLFGYDTGVISGALLYIRDD--FKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMN-----DRFGRRTSILV-AD  106 (432)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~-----dr~Grr~~l~~-~~  106 (432)
                      ++.+.++++|.-.+.....+|.+.++  -+.+..+.   +.. +.-..-+. .-+++.++.     .|+||||.-++ .-
T Consensus         4 lL~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~---~~f-Sla~~PfS-lKlLWaPiVDs~y~~~~GRRKSWiiP~Q   78 (544)
T PF13000_consen    4 LLVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQ---AIF-SLASYPFS-LKLLWAPIVDSVYSKRIGRRKSWIIPIQ   78 (544)
T ss_pred             HHHHHHHHcCcccccccccchhhhccccCCCChhHh---eee-eeeechhH-HHHhhhhhhhhhcccccCCcchhhhHHH
Confidence            44556678888777665677888777  45565554   211 11111111 123455554     48999997654 22


Q ss_pred             HHHHHHHHHHHHhC----------------------Chh--HHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHH
Q 013992          107 FLFFVGAVIMAAAP----------------------NPG--ALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVST  162 (432)
Q Consensus       107 ~~~~~~~~~~~~~~----------------------~~~--~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~  162 (432)
                      .+.++..+..+..-                      +..  .+....++.-+-++.--.+.-...-.+..+++++.+...
T Consensus        79 ~l~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTc  158 (544)
T PF13000_consen   79 YLSGILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTC  158 (544)
T ss_pred             HHHHHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHH
Confidence            33333322222111                      111  122222222222222222222344455577778888777


Q ss_pred             HHHHHHHHHHHHHHHHhhcc
Q 013992          163 NGFLITSGQFLSYLINLAFT  182 (432)
Q Consensus       163 ~~~~~~~g~~i~~~i~~~l~  182 (432)
                      ...+.+.|..++..+--.+.
T Consensus       159 qtvG~~~Gyfls~tvFlaln  178 (544)
T PF13000_consen  159 QTVGQTAGYFLSFTVFLALN  178 (544)
T ss_pred             HHhHhhhhHHHHHHHHHhhC
Confidence            77777777766665544444

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=97.24  E-value=0.13  Score=45.63  Aligned_cols=99  Identities=15%  Similarity=0.204  Sum_probs=64.8

Q ss_pred             HHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhhccccchhhhHHHHHHhcCCc--ccc-
Q 013992           80 AGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPA--KIR-  156 (432)
Q Consensus        80 ~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~R-  156 (432)
                      +..+.++++.+.+..++|-|+++.++...+... +..-+-+.+..++-.-.+.|++.+..+..--+|++++-..  ++| 
T Consensus        69 ~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~ly-iA~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya~~~~  147 (390)
T KOG3097|consen   69 LSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALY-IAANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYANQRG  147 (390)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHhhcchhHHhhccHHHhhccccccccccCcceecHHHHHHHHhhh
Confidence            344455666668899999999998887766543 2223346778888889999999998887766666555432  222 


Q ss_pred             ------------hhHHHHHHHHHHHHHHHHHHHHh
Q 013992          157 ------------GALVSTNGFLITSGQFLSYLINL  179 (432)
Q Consensus       157 ------------~~~~~~~~~~~~~g~~i~~~i~~  179 (432)
                                  +....+++....+|..+...+..
T Consensus       148 ~q~~~~~~~~ffg~Ffii~~~~qv~gn~issli~~  182 (390)
T KOG3097|consen  148 EQAGDGMKVRFFGEFFIIFQCAQVWGNLISSLIMT  182 (390)
T ss_pred             hhccCceeeeehhHHHHHHHHHHHHHHHHHHHHHH
Confidence                        34445555666666555554443

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=97.24  E-value=0.0058  Score=59.68  Aligned_cols=157  Identities=15%  Similarity=0.267  Sum_probs=119.9

Q ss_pred             cccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccc-cchHHHHHHHHHHHHHHHHHHHhC------
Q 013992           48 GVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRF-GRRTSILVADFLFFVGAVIMAAAP------  120 (432)
Q Consensus        48 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~------  120 (432)
                      +.....+.++..+++.....+   .-..+.+.-......+.++.++|-| ||-+++.++.++..++.++..++.      
T Consensus        55 g~~~nlv~ylt~~~~~~~~~a---a~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~  131 (571)
T KOG1237|consen   55 GLVSNLVTYLTLELHASGGGA---ANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALL  131 (571)
T ss_pred             cchhHHHHHHHHHhccchHHH---HHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence            335677788889998877666   6677777777778889999999965 888999999988888866543321      


Q ss_pred             ----------------C---hhHHHHHHhhhhccccchhhhHHHHHHhcCC---ccc-c--hhHHHHHHHHHHHHHHHHH
Q 013992          121 ----------------N---PGALITGRVFVGLGVGMASMTSPLYISEASP---AKI-R--GALVSTNGFLITSGQFLSY  175 (432)
Q Consensus       121 ----------------~---~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~---~~~-R--~~~~~~~~~~~~~g~~i~~  175 (432)
                                      +   ...+..+..+..+|.|+.-+...++-+|-++   +++ +  ...+.++....+.|..++.
T Consensus       132 p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~  211 (571)
T KOG1237|consen  132 PFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQ  211 (571)
T ss_pred             CccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHH
Confidence                            1   1245566677888999999999999999988   322 2  4678888899999999999


Q ss_pred             HHHhhccCCCCchHHHHHhhHHHHHHHHHHHhh
Q 013992          176 LINLAFTRAPGTWRWMLGVAGIPALLQFILMLL  208 (432)
Q Consensus       176 ~i~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~  208 (432)
                      .+..+.-+..+ |.+.|.+..+..++++++++.
T Consensus       212 t~~vyiq~~~~-w~lgf~i~~~~~~lai~iF~~  243 (571)
T KOG1237|consen  212 TVLVYIQDNVG-WKLGFGIPTVLNALAILIFLP  243 (571)
T ss_pred             HHHHhhhhccc-ceeeccHHHHHHHHHHHHHHc
Confidence            99888877776 999998888776666655443

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.13  E-value=0.0029  Score=58.36  Aligned_cols=139  Identities=16%  Similarity=0.097  Sum_probs=89.5

Q ss_pred             HHHHhhcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHH--HHH
Q 013992           35 SAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLF--FVG  112 (432)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~--~~~  112 (432)
                      .+++.++..+..+..+.+.+.. ..++....++.   .+....|.+|..++.--...+  |+  |++.+.+.+-.  .+.
T Consensus       251 PL~lVY~aEY~InqGv~~tl~f-p~~~~~~r~~Y---~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~  322 (402)
T PF02487_consen  251 PLFLVYFAEYFINQGVAPTLLF-PNSFFSPRDQY---RWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVF  322 (402)
T ss_pred             HHHHHHHHHHHHHhchHHHhcC-CccCCCHHHHH---HHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHH
Confidence            3445555555443333332211 12232233344   667777777766665432221  33  33333332222  222


Q ss_pred             ---HHHHHHhCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhc
Q 013992          113 ---AVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAF  181 (432)
Q Consensus       113 ---~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l  181 (432)
                         ....-+.++.|..++.-+..|+..|..+......+.|-.|+++|..+++..+.+-++|..++.+++-.+
T Consensus       323 ~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  323 LLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence               222344688999889999999999999999999999999999999999999999999999998887654

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=97.06  E-value=0.0052  Score=58.16  Aligned_cols=132  Identities=12%  Similarity=0.060  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHH-HH----h---CChhHHHHHHhhhhccccchhhhHHHHHH
Q 013992           77 MAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIM-AA----A---PNPGALITGRVFVGLGVGMASMTSPLYIS  148 (432)
Q Consensus        77 ~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~-~~----~---~~~~~~~~~r~l~G~~~~~~~~~~~~~i~  148 (432)
                      ...+...+..+..-.+..|+..|.=+..++++..+..++. .+    .   ..++..++.-++.|++.+........+.+
T Consensus        53 ~~~v~~l~~~~~~~~~~~~i~~~~Ri~~~lv~~~~~~~~~~~l~~~~~~~~~~f~~~~~~v~~~g~~~~~~q~s~~gla~  132 (437)
T TIGR00939        53 ASQLPSLLFNSLNLFLIFRIPVTVRLLGGLVILLVVVILVMVLVKVQTSETGFFVTTMASVVIINSGMALLQGSLFGLAG  132 (437)
T ss_pred             HHHHHHHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHhheeeecCCcchHHHHHHHHHHHHHhhhhhhcccchhhcc
Confidence            3334444444555555566664322333433222222221 11    1   13556666778888888877777766555


Q ss_pred             hcCCcccchhHHHHHHHHHHHHHHHHHHHH----hhccCCC-CchH--HHHHhhHHHHHHHHHHHhhcCCCH
Q 013992          149 EASPAKIRGALVSTNGFLITSGQFLSYLIN----LAFTRAP-GTWR--WMLGVAGIPALLQFILMLLLPESP  213 (432)
Q Consensus       149 ~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~----~~l~~~~-~~wr--~~f~~~~~~~~~~~~~~~~~~e~~  213 (432)
                       .+|++.-    ..+..+.+++++++.++.    ....+.. ..++  ..|.+..+..++.++.+..+++.|
T Consensus       133 -~fp~~~~----~a~~~G~g~aGv~~s~~~ii~~a~~~~~~~~~~~a~~YF~~a~~v~l~~i~~~~~l~k~~  199 (437)
T TIGR00939       133 -VFPSTYS----SAVMSGQGLAGVLTSLAMILVKASGNDSHGLKKSALGYFGTPCVVQLICIVCYLLLPKLP  199 (437)
T ss_pred             -cCCHHHH----HHHHhcchhHHHHHHHHHHHHHHhcCCccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCH
Confidence             5665433    333334444444333322    1122210 1122  234444455556666666777776

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.03  E-value=0.023  Score=53.54  Aligned_cols=103  Identities=15%  Similarity=0.224  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHhhhhhh---ccccchHHHHHHHHHHHHHHHHHHHh------------------CChhHHHHHHhhhhcc
Q 013992           77 MAVAGAIIGAAIGGWMN---DRFGRRTSILVADFLFFVGAVIMAAA------------------PNPGALITGRVFVGLG  135 (432)
Q Consensus        77 ~~~~~~~i~~~~~g~l~---dr~Grr~~l~~~~~~~~~~~~~~~~~------------------~~~~~~~~~r~l~G~~  135 (432)
                      ...+|..++..+.+.+.   +++||++.+.++..+..++.++.-..                  +++....+.-+++|++
T Consensus       287 ~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~  366 (461)
T KOG3098|consen  287 GIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFG  366 (461)
T ss_pred             HHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhH
Confidence            33444555555566666   56899999999999998888877542                  2455667777999999


Q ss_pred             ccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhh
Q 013992          136 VGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLA  180 (432)
Q Consensus       136 ~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~  180 (432)
                      .+......+.++.+.. +++|..+.++...-..++..++......
T Consensus       367 D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~  410 (461)
T KOG3098|consen  367 DACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPY  410 (461)
T ss_pred             HHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            9999999999999999 5668999999888888887776655443

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=96.85  E-value=0.022  Score=54.16  Aligned_cols=147  Identities=12%  Similarity=0.138  Sum_probs=100.7

Q ss_pred             cchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHH----------hCChhHHHHHHhhh
Q 013992           63 SVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAA----------APNPGALITGRVFV  132 (432)
Q Consensus        63 ~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~----------~~~~~~~~~~r~l~  132 (432)
                      .++...   +.+..+..++..++..+..+..-+..-|+++..+.++..+..+.-..          .++.+-.+.--++.
T Consensus       252 fs~~f~---~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~  328 (433)
T PF03092_consen  252 FSPSFY---GTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILE  328 (433)
T ss_pred             cCHHHH---HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHH
Confidence            444444   77777788888888889988888888899988888777666553211          12222222333555


Q ss_pred             hccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCC-------chHHHHHhhHHHHHHHHHH
Q 013992          133 GLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPG-------TWRWMLGVAGIPALLQFIL  205 (432)
Q Consensus       133 G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~-------~wr~~f~~~~~~~~~~~~~  205 (432)
                      .+.....+-+...+++|..|+..-|...++.....++|..++..++..+.+..+       +-.+..++..+..++.+.+
T Consensus       329 ~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~l  408 (433)
T PF03092_consen  329 EVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPL  408 (433)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHH
Confidence            555566666677889999999999999999999999999888888887766433       1234444555555555555


Q ss_pred             HhhcCCC
Q 013992          206 MLLLPES  212 (432)
Q Consensus       206 ~~~~~e~  212 (432)
                      ..++|+.
T Consensus       409 l~lLp~~  415 (433)
T PF03092_consen  409 LFLLPPQ  415 (433)
T ss_pred             HHHcCCC
Confidence            6667775

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PRK03612 spermidine synthase; Provisional

Probab=96.78  E-value=0.046  Score=53.15  Aligned_cols=138  Identities=14%  Similarity=0.022  Sum_probs=78.5

Q ss_pred             cccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHH-HHHHHH-HHHHH----HHHhCCh-hHHHHHHhhhh
Q 013992           61 FKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILV-ADFLFF-VGAVI----MAAAPNP-GALITGRVFVG  133 (432)
Q Consensus        61 ~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~-~~~~~~-~~~~~----~~~~~~~-~~~~~~r~l~G  133 (432)
                      +|.+..+.   +.+.+++++|.++|+.+++++.++--|+...+- ...+.+ ++..+    .++.... ..+...-++.+
T Consensus        45 ~G~s~~~~---~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~  121 (521)
T PRK03612         45 LGDSVTQF---STVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIG  121 (521)
T ss_pred             hCchHHHH---HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45444444   999999999999999999988744333322111 111111 11111    1111111 11223345567


Q ss_pred             ccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccC-CCCchHHHHHhhHHHHHHH
Q 013992          134 LGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTR-APGTWRWMLGVAGIPALLQ  202 (432)
Q Consensus       134 ~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~-~~~~wr~~f~~~~~~~~~~  202 (432)
                      +..|+..|....+..+... ++-++..|-......+|.++|.++.+++.- ..+..+..+.+..+..+++
T Consensus       122 ~l~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a  190 (521)
T PRK03612        122 LLIGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAA  190 (521)
T ss_pred             HHHHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            7777777777666654332 223566778888888999999888876654 4554566555544433333

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=96.61  E-value=0.0073  Score=51.59  Aligned_cols=54  Identities=17%  Similarity=0.416  Sum_probs=36.2

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHhhccC------CCCchHHHHHhhHHHHHHHHHHHhhc
Q 013992          154 KIRGALVSTNGFLITSGQFLSYLINLAFTR------APGTWRWMLGVAGIPALLQFILMLLL  209 (432)
Q Consensus       154 ~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~------~~~~wr~~f~~~~~~~~~~~~~~~~~  209 (432)
                      |+|+....+...+..+|.++....  ++.+      ...+|++.+.+.+++.++-++++.++
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ip--F~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if   61 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIP--FLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF   61 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhh--HHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            567777777777888888764433  2222      12269999999998877777765555

>TIGR00806 rfc RFC reduced folate carrier

Probab=96.54  E-value=0.0012  Score=62.04  Aligned_cols=119  Identities=11%  Similarity=-0.101  Sum_probs=81.5

Q ss_pred             HHHhHHHHHHHcCCCchhH-HHHHHHHHHHHHHHHHHHHHHHHhhhCCchhhHhHHHHHHHHHHHHHHHHhccCCCCCcc
Q 013992          295 VMYYSPTIVQLSGFASNRT-ALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMV  373 (432)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (432)
                      ..+..|.+.+ ..+.+..+ .+.+...+..+-.+..+++|++.||+|.|+++..+.+...+..+++.+...   ...+.+
T Consensus        45 ~s~a~p~L~~-elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~S---l~~L~i  120 (511)
T TIGR00806        45 ESFITPYLLT-VLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTS---VWHMQL  120 (511)
T ss_pred             HHHHHHHHHH-HcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence            3334454444 44555666 888889999999999999999999999999999999988888888777532   233333


Q ss_pred             chhcccccccccccccccccccCccchhhhhccCCCCccccccccccccc
Q 013992          374 SAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKVKG  423 (432)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~g~~~~~~~~~~g  423 (432)
                      .=++.|.+-+... .+.   ..++..+|++.|++  ++|+..+....+..
T Consensus       121 ~R~llGvaEA~~~-A~~---syI~~WfP~kER~r--atsi~~sg~~vG~~  164 (511)
T TIGR00806       121 MEVFYSVTMAARI-AYS---SYIFSLVPPSRYQR--AAAYSRAAVLLGVF  164 (511)
T ss_pred             HHHHHHHHHHHHH-HHH---HHHHHHCCHHHHHH--HHHHHHHHHHHHHH
Confidence            3444444433333 223   33344566699999  88888766655443

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=96.54  E-value=0.0012  Score=60.82  Aligned_cols=114  Identities=14%  Similarity=-0.057  Sum_probs=80.2

Q ss_pred             HHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhhHhHHHHHHHHHHHHHHHHhccCCCCCccchhccccccc
Q 013992          304 QLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSN  383 (432)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (432)
                      ++..+.++...+++.....+...+..++.|++.||++|++++.+|..+..++.+...+..+   .|.+.+.=.+.|.+-.
T Consensus        60 ~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~---Fwq~~l~R~~vGiGeA  136 (493)
T KOG1330|consen   60 QTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNH---FWQVLLCRGFVGIGEA  136 (493)
T ss_pred             HHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHH---HHHHHHHHHHhccchh
Confidence            4445666788899999999999999999999999999999999999999998888877633   2333332233333322


Q ss_pred             ccccccccccccCccchhhhhccCCCCccccccccccccccc
Q 013992          384 LTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKVKGIS  425 (432)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~g~~~~~~~~~~g~~  425 (432)
                      ...+...   +-+....|+..|++  ..|+-+-......|++
T Consensus       137 s~~~ia~---s~IaD~f~~~~Rs~--~~~ify~~ipvGsglG  173 (493)
T KOG1330|consen  137 SYSPIAP---SLIADSFPDDKRSR--VLGIFYFAIPVGSGLG  173 (493)
T ss_pred             hhcccch---hHhhhcCcchhhhH--HHHHhhhhccccccee
Confidence            3333333   33445556699999  8888776666655544

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=96.32  E-value=0.0068  Score=52.38  Aligned_cols=75  Identities=21%  Similarity=0.098  Sum_probs=59.1

Q ss_pred             chHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhhHhHHHHHHHHHHHHHHHHhccC
Q 013992          291 GINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETT  367 (432)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (432)
                      ..+.+..|.|..-+ ..+.++.+...+.....++..+| ++.|.+.|+.|.+.++.++.+...++..++........
T Consensus        17 t~Y~Fs~yS~~Lk~-~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i   91 (250)
T PF06813_consen   17 TTYTFSAYSPQLKS-RLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRI   91 (250)
T ss_pred             cccchhhhhHHHHH-HhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence            45666667666655 45566888888888888888775 78899999999999999999999999988877765543

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=95.99  E-value=0.00069  Score=52.87  Aligned_cols=92  Identities=13%  Similarity=0.034  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHHHHHhhhCCchhhHhHHHHHHHHHHHHHHHHhccCCCCCccchhcccccccccccccccccccCccch
Q 013992          321 TSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDC  400 (432)
Q Consensus       321 ~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (432)
                      ..++.+++.++.+++.||++||+.+..+.....++...+...   .+.+......+..+.......+.......+.   .
T Consensus         7 ~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---~   80 (141)
T TIGR00880         7 YALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS---SNITVLIIARFLQGFGAAFALVAGAALIADI---Y   80 (141)
T ss_pred             ehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---C
Confidence            456678889999999999999999988877777666555442   2222222223333333222222222223344   4


Q ss_pred             hhhhccCCCCcccccccccc
Q 013992          401 MKCLKASSPDCGFCASHSNK  420 (432)
Q Consensus       401 ~~~~r~~~~~~g~~~~~~~~  420 (432)
                      |++.|++  ..|+.....+.
T Consensus        81 ~~~~~~~--~~~~~~~~~~~   98 (141)
T TIGR00880        81 PPEERGV--ALGLMSAGIAL   98 (141)
T ss_pred             ChhhhhH--HHHHHHHhHHH
Confidence            4488888  77777655443

>TIGR00805 oat sodium-independent organic anion transporter

Probab=95.73  E-value=0.0049  Score=61.61  Aligned_cols=68  Identities=21%  Similarity=-0.049  Sum_probs=53.7

Q ss_pred             HHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhhHhHHHHHHHHHHHHHHH
Q 013992          294 TVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAV  362 (432)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~  362 (432)
                      ......+.+-++ .+.+..+.+++.....++.+++.++.+++.||.+||+++.++.++.+++.++.++.
T Consensus        51 ~~~~~l~~iek~-F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alp  118 (633)
T TIGR00805        51 LVNSSLTTIERR-FKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLP  118 (633)
T ss_pred             HHHhhchhhhhh-hCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhCh
Confidence            333334444444 44556778888888999999999999999999999999999999999998887665

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=95.62  E-value=0.19  Score=45.52  Aligned_cols=51  Identities=22%  Similarity=-0.026  Sum_probs=42.8

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhhHhHHHHHHHHHH
Q 013992          307 GFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLG  357 (432)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~  357 (432)
                      .+.+..+...++........+...+.|.+.||+|||+..+...++..++++
T Consensus        64 yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl  114 (354)
T PF05631_consen   64 YGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL  114 (354)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence            455577788888888888999999999999999999988887777777664

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=95.62  E-value=0.13  Score=48.50  Aligned_cols=128  Identities=16%  Similarity=0.228  Sum_probs=88.8

Q ss_pred             hhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHH---hC-------Ch
Q 013992           53 ALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAA---AP-------NP  122 (432)
Q Consensus        53 ~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~---~~-------~~  122 (432)
                      .+......-|.++...   |..-+...+....+.....++.+|+|..|.=+++.........++..   .+       +.
T Consensus       280 lmt~yl~~~G~s~~~i---gi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~  356 (432)
T PF06963_consen  280 LMTAYLKSQGYSPSVI---GIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISA  356 (432)
T ss_pred             HHHHHHHHCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHH
Confidence            3333333348877777   88999999999999999999999999999888877665544444332   22       12


Q ss_pred             hHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccC
Q 013992          123 GALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTR  183 (432)
Q Consensus       123 ~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~  183 (432)
                      ..++.+-.+.=+|.=..-....-++.|..|+++||...+......++-.++-..++-.+.+
T Consensus       357 ~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~~~  417 (432)
T PF06963_consen  357 YLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIFPR  417 (432)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            2233232333333333445566788999999999999999999998888887777655443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=95.46  E-value=0.043  Score=50.80  Aligned_cols=148  Identities=14%  Similarity=0.066  Sum_probs=84.9

Q ss_pred             ccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccc-hHHHHHHHHHHHHHHHHHHH----hCChhHHHHHHhhhhccc
Q 013992           62 KSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGR-RTSILVADFLFFVGAVIMAA----APNPGALITGRVFVGLGV  136 (432)
Q Consensus        62 ~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Gr-r~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~r~l~G~~~  136 (432)
                      |.++...   |.+.....++.++++.+.|.+.||... |++.+.......++......    ..+.+.+...-.+.|.+.
T Consensus       297 gY~~~~a---G~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~  373 (480)
T KOG2563|consen  297 GYEGVFA---GYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFG  373 (480)
T ss_pred             cCCcccc---chhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhh
Confidence            3344455   889999999999999999999999863 44455555554444322221    123344555567778888


Q ss_pred             cchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCC--chHH-HHHhhHHHHHHHHHHHhhcCCC
Q 013992          137 GMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPG--TWRW-MLGVAGIPALLQFILMLLLPES  212 (432)
Q Consensus       137 ~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~--~wr~-~f~~~~~~~~~~~~~~~~~~e~  212 (432)
                      ....|...-+-.|..-|..-+...|+......+-..+-.++.+...+..+  +|.+ .-+.....+++..++..+++|.
T Consensus       374 ~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~  452 (480)
T KOG2563|consen  374 TGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPD  452 (480)
T ss_pred             cCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhh
Confidence            88888888777776554444555565544433333333444444443322  2333 3333444444444554455443

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=95.14  E-value=0.32  Score=33.97  Aligned_cols=70  Identities=14%  Similarity=0.018  Sum_probs=55.0

Q ss_pred             HHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhhHhHHHHHHHHHHHHHHHH
Q 013992          293 NTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVF  363 (432)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (432)
                      +.+.-.+|...++. ..+..+++.+.....++-++|.+...++.++.++++.+..+.+...+..+.+.+..
T Consensus         9 FayTplLP~M~~~~-~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~   78 (85)
T PF06779_consen    9 FAYTPLLPLMQADG-GLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTH   78 (85)
T ss_pred             HHHHhHhHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34444566666654 55588899999999999999999999999887778888888888888777776653

Note that many members are hypothetical proteins.

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=94.95  E-value=0.041  Score=52.12  Aligned_cols=82  Identities=12%  Similarity=0.020  Sum_probs=63.8

Q ss_pred             hHHHHHH-hhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHHHH
Q 013992          123 GALITGR-VFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALL  201 (432)
Q Consensus       123 ~~~~~~r-~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~~~  201 (432)
                      +.+++.+ ++.|.+.-.......++-+|...+++++.+.+.++.....+..++|++........+ .|+...+.+...++
T Consensus       388 ~~~l~~~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g-~~~v~~~~~~~~l~  466 (488)
T KOG2325|consen  388 ILYLISFIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSG-PRPVWIILLCLLLV  466 (488)
T ss_pred             hhheeehhheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcC-ccHHHHHHHHHHHH
Confidence            3344544 556777776777788889999999999999999999999999999999888877776 78877776665555


Q ss_pred             HHHH
Q 013992          202 QFIL  205 (432)
Q Consensus       202 ~~~~  205 (432)
                      ...+
T Consensus       467 ~~~l  470 (488)
T KOG2325|consen  467 VAAL  470 (488)
T ss_pred             HHHH
Confidence            4444

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=94.88  E-value=0.35  Score=45.96  Aligned_cols=111  Identities=10%  Similarity=0.034  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhccccch--HHHHHH--HHHHHHHHHHHHHh---------CChhHHHHHHhhhhcc
Q 013992           69 LLQESIVSMAVAGAIIGAAIGGWMNDRFGRR--TSILVA--DFLFFVGAVIMAAA---------PNPGALITGRVFVGLG  135 (432)
Q Consensus        69 ~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr--~~l~~~--~~~~~~~~~~~~~~---------~~~~~~~~~r~l~G~~  135 (432)
                      +..-....++.++-.+|..+..+.. .-++|  ++++.+  =+++.-..++|..-         ++-+..++.-++.|+.
T Consensus       307 ~~~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~glt  385 (437)
T TIGR00939       307 FYPIICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFS  385 (437)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHh
Confidence            4456788888888888888665431 11222  333322  22233333344322         4556677789999999


Q ss_pred             ccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhh
Q 013992          136 VGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLA  180 (432)
Q Consensus       136 ~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~  180 (432)
                      .|-....+..+..+..++++|..+..+...+..+|..+|..++-.
T Consensus       386 nGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~  430 (437)
T TIGR00939       386 NGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFL  430 (437)
T ss_pred             hhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998888888888888877543

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=93.57  E-value=0.015  Score=52.54  Aligned_cols=20  Identities=15%  Similarity=0.112  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 013992          316 LLSLVTSGLNAAGSIVSIYF  335 (432)
Q Consensus       316 ~~~~~~~~~~~~~~~~~g~l  335 (432)
                      .....+.++..+|+.+.++.
T Consensus       186 ~~fl~Fn~gD~iGR~l~~~~  205 (309)
T PF01733_consen  186 VLFLLFNLGDFIGRFLASWP  205 (309)
T ss_dssp             --------------------
T ss_pred             HHHHHHHHHHHhcchhccee
Confidence            35667888899999988875

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=92.85  E-value=0.03  Score=54.65  Aligned_cols=150  Identities=13%  Similarity=0.160  Sum_probs=0.0

Q ss_pred             HHHHHHHhhcccceeccccchhhhh-hhhccccchhhhHHHHHHHHHHHH-HHHHHHHhhhhhhcccc--chHHHHHHHH
Q 013992           32 LAFSAGIGGLLFGYDTGVISGALLY-IRDDFKSVDRKTLLQESIVSMAVA-GAIIGAAIGGWMNDRFG--RRTSILVADF  107 (432)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~s~~~~-~~~i~~~~~g~l~dr~G--rr~~l~~~~~  107 (432)
                      .+....++..........+...+|. +..+|+.+..++   +++.+...+ +.++|.+++|.+..|+.  .|+.+....+
T Consensus       306 ~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A---~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v  382 (539)
T PF03137_consen  306 VFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQA---SLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIV  382 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH---HHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHH
Confidence            4445555555555555556666664 667899988887   666655555 67899999999999884  4444444443


Q ss_pred             HHHHHHHHHH---H-----------h----------------------------------------CChhHHHHHHhhhh
Q 013992          108 LFFVGAVIMA---A-----------A----------------------------------------PNPGALITGRVFVG  133 (432)
Q Consensus       108 ~~~~~~~~~~---~-----------~----------------------------------------~~~~~~~~~r~l~G  133 (432)
                      ...++.++..   +           .                                        +++..+++..++.-
T Consensus       383 ~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~  462 (539)
T PF03137_consen  383 VSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILS  462 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHH
Confidence            3333332200   0           0                                        01223334434444


Q ss_pred             ccccchhhhHHHHHHhcCCcccchhHHHHHHHH-HHHHHHHHHHHHhhccCC
Q 013992          134 LGVGMASMTSPLYISEASPAKIRGALVSTNGFL-ITSGQFLSYLINLAFTRA  184 (432)
Q Consensus       134 ~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~-~~~g~~i~~~i~~~l~~~  184 (432)
                      +..+.........+-...|+++|+.++|+.... -.+|.+-||++-|.++|.
T Consensus       463 ~~~~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~  514 (539)
T PF03137_consen  463 FFTFMSQVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS  514 (539)
T ss_dssp             ----------------------------------------------------
T ss_pred             HHHHhcccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence            444444555555666788999999999997655 455777888888888875

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=92.06  E-value=3.5  Score=38.32  Aligned_cols=125  Identities=14%  Similarity=0.110  Sum_probs=80.5

Q ss_pred             hhhhhhhccccchh-hhHHHHHHHHH-HHHHHHHHHHhhhhhhccccchHHHHHHHHHHH-HHH-HHH------HHhCCh
Q 013992           53 ALLYIRDDFKSVDR-KTLLQESIVSM-AVAGAIIGAAIGGWMNDRFGRRTSILVADFLFF-VGA-VIM------AAAPNP  122 (432)
Q Consensus        53 ~~~~i~~~~~~~~~-~~~~~~~~~s~-~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~-~~~-~~~------~~~~~~  122 (432)
                      +.|.+..+-.-++. +.|+.-....+ +.+.-.+|.+.+.++-++= ||+..+..+.=.. +-. .+|      ..-.+-
T Consensus       265 iFPg~~~~~~~~~~~~~~y~~~~~~l~fN~~d~vG~~~a~~~~~~~-~r~l~i~v~lR~lfiPlF~~cn~~~~~v~~~~~  343 (406)
T KOG1479|consen  265 IFPGFCSEVKSSGLLGDWYALLLVFLSFNVFDLIGSILAALLTWPD-PRKLTIPVLLRLLFIPLFLLCNYPPLPVVFESD  343 (406)
T ss_pred             ecchhhcccccCcccchhhHHHHHHHHhHHHHHhhhhhhhcccCCC-CceehHHHHHHHHHHHHHHHhccCCCCceecCc
Confidence            34555444332222 34555666666 8888888877776665543 4443333222111 111 111      123567


Q ss_pred             hHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHH
Q 013992          123 GALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLIN  178 (432)
Q Consensus       123 ~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~  178 (432)
                      +.+++.-.+.|+..|=.....+.+..+-.|++++..+-.+.......|...|..++
T Consensus       344 ~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s  399 (406)
T KOG1479|consen  344 GWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLS  399 (406)
T ss_pred             hHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            77888899999999988888888889999999888887777777777777777664

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=91.84  E-value=2.5  Score=39.56  Aligned_cols=102  Identities=13%  Similarity=0.118  Sum_probs=75.8

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHH--HHHHHHHHHHHHHHHHhCChhHHHHHHhhhhccccchhhh
Q 013992           65 DRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSI--LVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMT  142 (432)
Q Consensus        65 ~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~  142 (432)
                      +....+.|.+-++..+..+++.+..|++-.++.+..-+  ....++.+...+++++++|.+...++.++.+...-...+.
T Consensus       281 ~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTi  360 (412)
T PF01770_consen  281 DNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITI  360 (412)
T ss_pred             CCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444458888999999999999999997777764433  3344455566667788999999999998888777777777


Q ss_pred             HHHHHHhcCCcccchhHHHHHHHH
Q 013992          143 SPLYISEASPAKIRGALVSTNGFL  166 (432)
Q Consensus       143 ~~~~i~~~~~~~~R~~~~~~~~~~  166 (432)
                      +..-++.....+.-+..+|+....
T Consensus       361 A~~qIA~~l~~e~yaLVFGiNtf~  384 (412)
T PF01770_consen  361 ASFQIAKNLSEERYALVFGINTFV  384 (412)
T ss_pred             HHHHHHHhccccceeeeeeeHHHH
Confidence            777777777766668777765543

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=90.78  E-value=0.083  Score=47.78  Aligned_cols=107  Identities=17%  Similarity=0.251  Sum_probs=3.8

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhcc-ccchHHHHHH--HHHHHHHHHHHH----------HhCChhHHHHHHhhhhccccch
Q 013992           73 SIVSMAVAGAIIGAAIGGWMNDR-FGRRTSILVA--DFLFFVGAVIMA----------AAPNPGALITGRVFVGLGVGMA  139 (432)
Q Consensus        73 ~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~--~~~~~~~~~~~~----------~~~~~~~~~~~r~l~G~~~~~~  139 (432)
                      .....+.++-.+|....++.-=+ -.+|++.+.+  =+++.-..++|.          ..+|-+.+++.-++.|+..|-.
T Consensus       186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl  265 (309)
T PF01733_consen  186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL  265 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence            46677888888888877764211 1345444332  122222222331          2235566777889999999999


Q ss_pred             hhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHh
Q 013992          140 SMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINL  179 (432)
Q Consensus       140 ~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~  179 (432)
                      ...++.+..+..++++|..+..+......+|..+|..++-
T Consensus       266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~  305 (309)
T PF01733_consen  266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSF  305 (309)
T ss_dssp             -HHHH-----------------------------------
T ss_pred             hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999988888888888888887776654

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=90.78  E-value=5  Score=34.76  Aligned_cols=101  Identities=15%  Similarity=0.095  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhc-cccchHHHH----HHHHHHHHHHHHHHH-hC----ChhHHHHHHhhhhccccchhh
Q 013992           72 ESIVSMAVAGAIIGAAIGGWMND-RFGRRTSIL----VADFLFFVGAVIMAA-AP----NPGALITGRVFVGLGVGMASM  141 (432)
Q Consensus        72 ~~~~s~~~~~~~i~~~~~g~l~d-r~Grr~~l~----~~~~~~~~~~~~~~~-~~----~~~~~~~~r~l~G~~~~~~~~  141 (432)
                      ....-.+..|..+|....|+... ++.||+.+.    .+.+++.++.++... ..    +...+.+.-++.|++.=+..+
T Consensus       144 ~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~  223 (267)
T PF07672_consen  144 PIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQG  223 (267)
T ss_pred             HHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhH
Confidence            44555666777788788888875 455666443    334444444444212 21    245566666777765433344


Q ss_pred             hHHHHHHhcCCcccchhHHHHHHHHHHHHHHH
Q 013992          142 TSPLYISEASPAKIRGALVSTNGFLITSGQFL  173 (432)
Q Consensus       142 ~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i  173 (432)
                      ......-| ++..++.+.--.++..+++|.++
T Consensus       224 ViL~lPhE-yK~~~pk~ig~~Fg~iWGfGY~~  254 (267)
T PF07672_consen  224 VILNLPHE-YKGYNPKKIGIQFGLIWGFGYIF  254 (267)
T ss_pred             HHhcChhh-hcCCCcceehhHHHHHHHHHHHH
Confidence            43333333 33333333334445556665543

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=90.36  E-value=0.29  Score=38.97  Aligned_cols=69  Identities=10%  Similarity=0.041  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCchhhHhHHHHHHHHHHHHHHHHhccCCCCCccchhccccccccccccc
Q 013992          317 LSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDY  389 (432)
Q Consensus       317 ~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (432)
                      -..+......+..++.+.+.+++|.|+.++++.....+-.......    ..+.+.....+.|+.....+...
T Consensus        42 slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~~----~~~~l~~~s~l~G~~~a~lW~aq  110 (156)
T PF05978_consen   42 SLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFYP----NSYTLYPASALLGFGAALLWTAQ  110 (156)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHhhhhHHhhHhh
Confidence            3344445567777888999999999999999988877654443221    23344555666666655544433

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=89.90  E-value=4.1  Score=35.52  Aligned_cols=133  Identities=15%  Similarity=0.178  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhccccch--HHHHHHHHHHHHHHHHHHH----hC---ChhHHHHHHhhhhccccchhhh
Q 013992           72 ESIVSMAVAGAIIGAAIGGWMNDRFGRR--TSILVADFLFFVGAVIMAA----AP---NPGALITGRVFVGLGVGMASMT  142 (432)
Q Consensus        72 ~~~~s~~~~~~~i~~~~~g~l~dr~Grr--~~l~~~~~~~~~~~~~~~~----~~---~~~~~~~~r~l~G~~~~~~~~~  142 (432)
                      |.+.+.+++..++|+-+..++..|-..|  ..+.+..++.++...+...    ++   +...-+++.++.-.+.|..+|.
T Consensus       285 GfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwPS  364 (454)
T KOG4332|consen  285 GFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWPS  364 (454)
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcchH
Confidence            8899999999999999998888776544  4455555554444433322    22   2223345556666678889999


Q ss_pred             HHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHHHHHHHH
Q 013992          143 SPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFIL  205 (432)
Q Consensus       143 ~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~~~~~~~  205 (432)
                      .+.+=+++.|.+.|+..+.++..-...-..++-.. -...+...+-|..|-++.....+..+.
T Consensus       365 imkmRsqyIPEearstimNfFRvPLnifvClvLyn-lh~~~~p~~tr~mf~icS~~~~~a~i~  426 (454)
T KOG4332|consen  365 IMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYN-LHVDAFPTTTRNMFGICSAFLFVASIL  426 (454)
T ss_pred             HHHHHHhhCCHHHHhhhhhheechhhHhhhhhhee-cccccCccccchhhhhhHHHHHHHHHH
Confidence            99999999999999988887765444322221110 001111113567777777655555443

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=85.16  E-value=6.9  Score=35.58  Aligned_cols=117  Identities=15%  Similarity=0.179  Sum_probs=83.6

Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchH--HHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhhccccchhh
Q 013992           64 VDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRT--SILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASM  141 (432)
Q Consensus        64 ~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~  141 (432)
                      ++....+.|..-++..+..+++.+..|.+--++.|..  .+..+.+..+...++++.++++|...++.++.+.-.....+
T Consensus       266 ~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~it  345 (433)
T KOG3810|consen  266 PNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLTIT  345 (433)
T ss_pred             CCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhhhh
Confidence            3444444477777888888899999999988777663  44455666666667788889999988888888777777778


Q ss_pred             hHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccC
Q 013992          142 TSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTR  183 (432)
Q Consensus       142 ~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~  183 (432)
                      .+..-+++....+.-|..+|+....   +.++-.++.....|
T Consensus       346 iA~~~iA~nL~~e~~gLvFGiNTFv---Al~lQsilT~iVvd  384 (433)
T KOG3810|consen  346 IATFQIARNLSSELFGLVFGINTFV---ALILQSILTLIVVD  384 (433)
T ss_pred             HHHHHHHHhhhhhhheeeeehHHHH---HHHHHHhheEEEEc
Confidence            8888888888888778888876543   33333444444455

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=85.14  E-value=0.7  Score=43.24  Aligned_cols=130  Identities=15%  Similarity=-0.037  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhhccccchhhhHHHHHHhcC
Q 013992           72 ESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEAS  151 (432)
Q Consensus        72 ~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~  151 (432)
                      .|-..++.+...+.+....++.||+|-|+.++.+...+.++.-+.+...+.......|-..|+-.+.....-...++++.
T Consensus       335 ~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y~  414 (498)
T KOG0637|consen  335 CLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALALYA  414 (498)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHHHHH
Confidence            45555677777788999999999999888888888778888888888888888888888888655555444434333322


Q ss_pred             ---------------------Cc--ccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHHHH
Q 013992          152 ---------------------PA--KIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALL  201 (432)
Q Consensus       152 ---------------------~~--~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~~~  201 (432)
                                           .+  .-+|...++.+....+-+++.....|.+.+..++=+.+-+..+..++.
T Consensus       415 ~~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G~~~~~~~~~~a~s~~  487 (498)
T KOG0637|consen  415 ILGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFGGGNLPAFVSGAVALL  487 (498)
T ss_pred             HhCCccccccccccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhhhcCCcchhHHHHHHHHHH
Confidence                                 11  123566666777777777766666666666555445554444444443

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=83.88  E-value=4.5  Score=40.79  Aligned_cols=70  Identities=13%  Similarity=-0.071  Sum_probs=49.3

Q ss_pred             HHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh-hCCchhhHhHHHHHHHHHHHHHHH
Q 013992          293 NTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDR-TGRKKLLVISLSGVILSLGVLSAV  362 (432)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~  362 (432)
                      +++...+..|+....+.++..+...........-+..+++|+++|+ +|+++.+.++.++..++..++.+.
T Consensus         4 YGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~   74 (654)
T TIGR00926         4 YGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFG   74 (654)
T ss_pred             eecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc
Confidence            3444444556555555555555556565666667778899999996 699999999998888888777653

>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length

Probab=83.62  E-value=25  Score=29.54  Aligned_cols=38  Identities=18%  Similarity=0.144  Sum_probs=19.7

Q ss_pred             hcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 013992          149 EASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPG  186 (432)
Q Consensus       149 ~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~  186 (432)
                      |+...++|.+.-........++..+|..++..+.+..+
T Consensus       153 ~~~~~~~~~~~~~~~~~~~i~~f~~Ga~~ga~l~~~~~  190 (209)
T PF06912_consen  153 RYLRGKDRALRRALRYLLIILSFFIGAILGALLYRRLG  190 (209)
T ss_pred             HHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44444444333344444555566666666666655544

The function of this family is unknown although a few members are thought to be membrane proteins.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	432
4gby_A	491	The Structure Of The Mfs (Major Facilitator Superfa		6e-45

>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491

Iteration: 1
 Score =  178 bits (451), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 120/358 (33%), Positives = 179/358 (50%), Gaps = 57/358 (15%)
Query: 23  SWKNPYVLRLAFSAGIGGLLFGYDTGVISGAL-----LYIRDDFKSVDRKTLLQESIVSM 77
            + + Y+  +   A +GGLLFGYDT VISG +     +++     S      L    V+ 
Sbjct: 4   QYNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVAS 63
Query: 78  AVXXXXXXXXXXXWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPG-------------- 123
           A+           + ++RFGRR S+ +A  LFF+  V  +A P  G              
Sbjct: 64  ALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGV-GSAWPELGFTSINPDNTVPVYL 122
Query: 124 -----ALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLIN 178
                  +  R+  G+GVG+ASM SP+YI+E +PA IRG LVS N F I  GQ L Y +N
Sbjct: 123 AGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVN 182
Query: 179 LAFTRAPGT-------WRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRK 231
               R+          WR+M     IPALL  +L+  +PESPRWL  +G++E+A+ ILRK
Sbjct: 183 YFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRK 242
Query: 232 VYPAHEVETEIRDLKESVDXXXXXXXXXXXXNLVKLLKTRTVRRGLIAGVG-------LQ 284
           +         ++++K S+D                    +T  R L+ GVG       L 
Sbjct: 243 IMGNTLATQAVQEIKHSLDH-----------------GRKTGGRLLMFGVGVIVIGVMLS 285
Query: 285 VFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRK 342
           +FQQFVGIN V+YY+P + +  G AS   ALL +++   +N   ++++I  +D+ GRK
Sbjct: 286 IFQQFVGINVVLYYAPEVFKTLG-ASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRK 342

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	432
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	2e-06
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	7e-06
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	4e-05
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	7e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05
2cfq_A	417	Lactose permease; transport, transport mechanism,	9e-05
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	2e-04
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	2e-04

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 28/159 (17%), Positives = 48/159 (30%), Gaps = 32/159 (20%)

Query: 72  ESIVSMAVAGAIIGAAIG----GWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALIT 127
           E  V   +   ++   +     G ++DR GRR  ILV   +F +  ++     +   LI 
Sbjct: 34  EGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIA 93

Query: 128 GRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAP-- 185
                G+G G+  +         +    R     T           S L N+    +P  
Sbjct: 94  ASAMQGMGTGVGGV--------MARTLPRDLYERT-----QLRHANSLL-NMGILVSPLL 139

Query: 186 -----------GTWRWMLGVAGIPALLQFILMLL-LPES 212
                        WR       +        M   +PE+
Sbjct: 140 APLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPET 178

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Length = 438

 Score = 46.8 bits (111), Expect = 7e-06
 Identities = 41/305 (13%), Positives = 87/305 (28%), Gaps = 19/305 (6%)

Query: 61  FKSVDRKTLLQESIVSMAVAGAI-IGAAIGGWMNDRFGRRTSILVADFLFFVGAVIM--- 116
           F+     T  Q  ++  A      I     G +  +   +  I+   FL+ +GA +    
Sbjct: 52  FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPA 111

Query: 117 AAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYL 176
           A   N    + G   +  G+G     +  +++   P       ++      + G  ++ +
Sbjct: 112 AEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVV 171

Query: 177 INLAFTRAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAH 236
              +   +    +    +  +           L  S +  Y          I+  +    
Sbjct: 172 FGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYM---------IIVAIVLLV 222

Query: 237 EVETEIRDLKESVDKEIEE-EGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTV 295
            +   +            + +  S   +L +L + R  R  ++A    Q           
Sbjct: 223 ALLIMLTKFPALQSDNHSDAKQGSFSASLSRLARIRHWRWAVLA----QFCYVGAQTACW 278

Query: 296 MYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVI-SLSGVIL 354
            Y     V+     +   A      T      G     + I R    K+L   +L  + L
Sbjct: 279 SYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMAL 338

Query: 355 SLGVL 359
            L   
Sbjct: 339 CLISA 343

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 44.7 bits (106), Expect = 4e-05
 Identities = 51/343 (14%), Positives = 107/343 (31%), Gaps = 63/343 (18%)

Query: 64  VDRKTL------LQESIVSMAVAGAI---------IGAAIGGWMNDRFGRRTSILVADFL 108
           + RK        L E   S    G               I G ++DR   R  +     L
Sbjct: 42  LVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL 101

Query: 109 FFVGAVIMAAAP----NPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNG 164
                + M   P    +   +       G   GM        +      K RG +V    
Sbjct: 102 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIV---S 158

Query: 165 FLITS---GQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLLL----PESPRWLY 217
               +   G  +  L+ L        W   L +    A+L  +    +    P+S     
Sbjct: 159 VWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLP- 217

Query: 218 RKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGL 277
                               +E    D  +  +++ E+E ++++I +  +L  +      
Sbjct: 218 -------------------PIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKL----- 253

Query: 278 IAGVGLQVFQQFVGINTVMYYSPT-IVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFI 336
           +  + +     ++    ++ +SPT + ++  FA ++++    L        G+++  +  
Sbjct: 254 LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAG-IPGTLLCGWMS 312

Query: 337 D---RTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAV 376
           D   R  R    V  ++ V ++  V         + +P V  +
Sbjct: 313 DKVFRGNRGATGVFFMTLVTIATIVYWMNP----AGNPTVDMI 351

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 33/165 (20%), Positives = 57/165 (34%), Gaps = 8/165 (4%)

Query: 68  TLLQESIVSMAVA-GAIIGAAIGGWMNDR-FGRRTSILVADFLFFVGAVI----MAAAPN 121
            L + S          I G  + GWM+D+ F          F+  V        M  A N
Sbjct: 286 ALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGN 345

Query: 122 PGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVS-TNGFLITSGQFLSYLINLA 180
           P   +   + +G  +    M   L+  E +P K  G     T  F    G   +  I + 
Sbjct: 346 PTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAI-VG 404

Query: 181 FTRAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEA 225
           +T     W     V    ++L  IL++++    +  + +  +E  
Sbjct: 405 YTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQELV 449

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 6e-05
 Identities = 58/400 (14%), Positives = 118/400 (29%), Gaps = 104/400 (26%)

Query: 56  YIRD-DFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAV 114
           ++ + D K V       +SI+S      II +            + ++     LF+    
Sbjct: 29  FVDNFDCKDVQDMP---KSILSKEEIDHIIMS------------KDAVSGTLRLFW---- 69

Query: 115 IMAAAPNPGALITGRVFVG--LGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQ- 171
            + +          + FV   L +    + SP+   +  P+ +    +     L    Q 
Sbjct: 70  TLLSKQEEMV----QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125

Query: 172 FLSYLIN-----LAFTRA-----PGTWRWMLGVAG-------IPALLQFILMLLLPESPR 214
           F  Y ++     L   +A     P     + GV G       +   L + +   +     
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185

Query: 215 WLY--RKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRT 272
           WL        E    +L+K+   ++++       +     I+    S +  L +LLK++ 
Sbjct: 186 WLNLKNCNSPETVLEMLQKLL--YQIDPNWTSRSDH-SSNIKLRIHSIQAELRRLLKSKP 242

Query: 273 VRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASN-RTALLLSLVTSGLNAAGSIV 331
               L+  V          +  V   +        F  + +      L+T+       + 
Sbjct: 243 YENCLL--V----------LLNV--QNAKAWN--AFNLSCKI-----LLTTR-FK--QVT 278

Query: 332 SIYFIDRTGRKKLLVISLSGVIL---SLGVLSAVF--------HETTSHSPMVSAVETSH 380
              F+       + +   S  +       +L             E  + +P   ++    
Sbjct: 279 D--FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI---- 332

Query: 381 FSNLTCPDYSSAATADRW---DCMK-------CLKASSPD 410
            +     D    AT D W   +C K        L    P 
Sbjct: 333 IAES-IRDG--LATWDNWKHVNCDKLTTIIESSLNVLEPA 369

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417

 Score = 43.4 bits (102), Expect = 9e-05
 Identities = 20/188 (10%), Positives = 58/188 (30%), Gaps = 11/188 (5%)

Query: 25  KNPYVLR-LAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAI 83
           + P +     +  G+      +D    +    +    F + ++ T +   + +M      
Sbjct: 218 RQPKLWFLSLYVIGVSCTYDVFDQQFAN----FFTSFFATGEQGTRVFGYVTTMGELLNA 273

Query: 84  IGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTS 143
                   + +R G + ++L+A  +  V  +  + A +   ++  +      V    +  
Sbjct: 274 SIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGC 333

Query: 144 PLYISEASPAKIRGALVS-----TNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIP 198
             YI+     +    +            +     L+  +  +     G +  +  VA   
Sbjct: 334 FKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGAYLVLGLVALGF 392

Query: 199 ALLQFILM 206
            L+    +
Sbjct: 393 TLISVFTL 400

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 32/143 (22%), Positives = 61/143 (42%), Gaps = 10/143 (6%)

Query: 73  SIVSMAVAGAIIGAAIGGWMNDRF-GRRTSILVADFLFFVGAVIMAAAPNPGALITGRVF 131
           SI+++  +   +   IGG++ DR  G R ++     L  +G +++A      AL    + 
Sbjct: 58  SIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIIL 117

Query: 132 VGLGVG-----MASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPG 186
           + +G G     ++++   LY  +    + R A  S   F I  G F++ LI  A   A G
Sbjct: 118 IIIGTGFLKPNVSTLVGTLY--DEHDRR-RDAGFSIFVFGINLGAFIAPLIVGAAQEAAG 174

Query: 187 TWRWMLGVAGIPALLQFILMLLL 209
            +     +A I   +  ++    
Sbjct: 175 -YHVAFSLAAIGMFIGLLVYYFG 196

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 41.3 bits (96), Expect = 2e-04
 Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 16/69 (23%)

Query: 210 PESPR-WLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEE--EGSSEKINLVK 266
           PES R W     REE+ + +          +   ++ +E   K++EE  +  SE++    
Sbjct: 84  PESIRKW-----REEQRKRLQEL---DAASKVMEQEWREKAKKDLEEWNQRQSEQVE--- 132

Query: 267 LLKTRTVRR 275
             K +   R
Sbjct: 133 --KNKINNR 139

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	432
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	100.0
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	100.0
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	100.0
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.96
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.95
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.89
2xut_A	524	Proton/peptide symporter family protein; transport	99.87
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.56
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.47
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.42
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.4
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.36
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.02
2xut_A	524	Proton/peptide symporter family protein; transport	98.9

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=100.00  E-value=3.2e-37  Score=297.45  Aligned_cols=383  Identities=33%  Similarity=0.562  Sum_probs=284.4

Q ss_pred             CCCChhHHHHHHHHHHhhcccceeccccchhhhhhhhccccch-----hhhHHHHHHHHHHHHHHHHHHHhhhhhhcccc
Q 013992           23 SWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVD-----RKTLLQESIVSMAVAGAIIGAAIGGWMNDRFG   97 (432)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G   97 (432)
                      ++++++.+.+.+..+++.++.++|...++..+|.+.++++.+.     ....+.+++.+++.+|..+|++++|+++||+|
T Consensus         4 ~~~~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~G   83 (491)
T 4gc0_A            4 QYNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFG   83 (491)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTC
T ss_pred             CcChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3455677777777888899999999999999999988875432     23344589999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHHHHH------------------HhCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhH
Q 013992           98 RRTSILVADFLFFVGAVIMA------------------AAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGAL  159 (432)
Q Consensus        98 rr~~l~~~~~~~~~~~~~~~------------------~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~  159 (432)
                      ||++++++.+++.+++++++                  +++|+++++++|+++|++.|...+....+++|+.|+++|++.
T Consensus        84 Rk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~  163 (491)
T 4gc0_A           84 RRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKL  163 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhh
Confidence            99999999999999999998                  478999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccCCC-------CchHHHHHhhHHHHHHHHHHHhhcCCCHHHHHHcCCHHHHHHHHHHh
Q 013992          160 VSTNGFLITSGQFLSYLINLAFTRAP-------GTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKV  232 (432)
Q Consensus       160 ~~~~~~~~~~g~~i~~~i~~~l~~~~-------~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~  232 (432)
                      .++.+.+...|..+++.++.......       ..||+.+....++.++..+..+++||+|+|+..+++.|++.+.+++.
T Consensus       164 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~  243 (491)
T 4gc0_A          164 VSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKI  243 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHh
Confidence            99999999999999998887665432       24888998888888888888899999999999999999998887765


Q ss_pred             CCCCchHHHHHHHHHHhHHHHHHccCccchhHHHhhcccchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchh
Q 013992          233 YPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNR  312 (432)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (432)
                      ......+++..+..+...++      ++.......++.++    .........+.++.+.+.+..+.|.+.+..+.. ..
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  312 (491)
T 4gc0_A          244 MGNTLATQAVQEIKHSLDHG------RKTGGRLLMFGVGV----IVIGVMLSIFQQFVGINVVLYYAPEVFKTLGAS-TD  312 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH------HHHTTHHHHSCCTH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCC-HH
T ss_pred             cCCchhHHHHHHHHHHHHhh------hhhhhHHHHhcccH----HHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCC-cc
Confidence            43322222211111111111      11111122222222    233445556677778888888888888877655 45


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhhHhHHHHHHHHHHHHHHHHhccCCCCCccchhcc--cccccccccccc
Q 013992          313 TALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVET--SHFSNLTCPDYS  390 (432)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  390 (432)
                      ..........+..+++.++.+++.||+|||+.+..+.....++++.+.............+..+..  ..+.....+...
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (491)
T 4gc0_A          313 IALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCW  392 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHH
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHH
Confidence            556667777888999999999999999999999998888888877776655444332222211111  111111122222


Q ss_pred             cccccCccchhhhhccCCCCccccccccccc
Q 013992          391 SAATADRWDCMKCLKASSPDCGFCASHSNKV  421 (432)
Q Consensus       391 ~~~~~~~~~~~~~~r~~~~~~g~~~~~~~~~  421 (432)
                      ...+|++|+   +.|++  +.|++++..+..
T Consensus       393 ~~~~E~fPt---~~R~~--~~g~~~~~~~~~  418 (491)
T 4gc0_A          393 VLLSEIFPN---AIRGK--ALAIAVAAQWLA  418 (491)
T ss_dssp             HHHHHSSCT---TTHHH--HHHHHHHHHHHH
T ss_pred             HHHHHhCCH---hHHHH--HHHHHHHHHHHH
Confidence            334677776   99999  999987765543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=100.00  E-value=2.5e-34  Score=273.05  Aligned_cols=292  Identities=14%  Similarity=0.082  Sum_probs=240.6

Q ss_pred             hhHHHHHHHHHHhhcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHH
Q 013992           27 PYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVAD  106 (432)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~  106 (432)
                      ++++..+..+++..+..+++....++.+|.+.+++|.+..+.   +++.+.+.++..+++++.|+++||+|||++++.+.
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~---g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~   98 (438)
T 3o7q_A           22 RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQA---GLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGL   98 (438)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHH---HHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHH
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHH
Confidence            344556666777778888888899999999999999999888   99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH---HHhCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhcc-
Q 013992          107 FLFFVGAVIM---AAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFT-  182 (432)
Q Consensus       107 ~~~~~~~~~~---~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~-  182 (432)
                      ++.+++.+++   +++++++.++++|+++|++.+...+...+++.|++|+++|++++++.+....+|..+++.+++.+. 
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  178 (438)
T 3o7q_A           99 FLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLIL  178 (438)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred             HHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999   889999999999999999999999999999999999999999999999999999999999999998 


Q ss_pred             CCCCc------------------------hHHHHHhhHHHHHHHHHHHhh--cCCCHHHHHHcCCHHHHHHHHHHhCCCC
Q 013992          183 RAPGT------------------------WRWMLGVAGIPALLQFILMLL--LPESPRWLYRKGREEEAQAILRKVYPAH  236 (432)
Q Consensus       183 ~~~~~------------------------wr~~f~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~  236 (432)
                      +..+.                        ||+.|++.+...++..++.++  .||+++.   + +               
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~-~---------------  239 (438)
T 3o7q_A          179 SNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD---N-H---------------  239 (438)
T ss_dssp             TSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT---C-C---------------
T ss_pred             cccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc---c-c---------------
Confidence            66554                        999998887766666555444  3554320   0 0               


Q ss_pred             chHHHHHHHHHHhHHHHHHccCccchhHHHhhcccchhHHHHHHHHHHHHhhhcchHHHHHhHHHH-HHHcCCCchhHHH
Q 013992          237 EVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTI-VQLSGFASNRTAL  315 (432)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  315 (432)
                                      +++++++.+...++.+|+|+++...+..++..     ........+.|.| +++..+.+..+++
T Consensus       240 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~~~~  298 (438)
T 3o7q_A          240 ----------------SDAKQGSFSASLSRLARIRHWRWAVLAQFCYV-----GAQTACWSYLIRYAVEEIPGMTAGFAA  298 (438)
T ss_dssp             ----------------CCSSTTSHHHHHHHHTTCSHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHSTTCCHHHHH
T ss_pred             ----------------ccccccchhhhHHHHHhChHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhhccCCcchhHHH
Confidence                            00111223345678889998877555433332     2556777888999 8888677788889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhCCchhhHhHHHHHHHHHHHHHH
Q 013992          316 LLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSA  361 (432)
Q Consensus       316 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~  361 (432)
                      .......++.+++.++.+++.||++||+.+..+..+..++++++..
T Consensus       299 ~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~  344 (438)
T 3o7q_A          299 NYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAF  344 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998888777776655544

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=100.00  E-value=9.4e-36  Score=283.94  Aligned_cols=363  Identities=13%  Similarity=0.051  Sum_probs=263.4

Q ss_pred             ChhHHHHHHHHHHhhcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHH
Q 013992           26 NPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVA  105 (432)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~  105 (432)
                      ++++++.+..+++..+..+++.....+.+|.+.+++ .+..+.   +++.+++.++..++++++|+++||+|||++++.+
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~---g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~   98 (451)
T 1pw4_A           23 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDL---GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAG   98 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCH---HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHH---HHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHH
Confidence            345677778888888999999999999999999999 888888   9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH----hCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhc
Q 013992          106 DFLFFVGAVIMAA----APNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAF  181 (432)
Q Consensus       106 ~~~~~~~~~~~~~----~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l  181 (432)
                      .++.+++.+++++    ++|++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++++
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  178 (451)
T 1pw4_A           99 LILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG  178 (451)
T ss_dssp             HHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999    999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             cCCCCchHHHHHhhHHHHHHHHHH-HhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCcc
Q 013992          182 TRAPGTWRWMLGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSE  260 (432)
Q Consensus       182 ~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (432)
                      .+..++||+.|++.++..++..++ ++++||+|+....+++.+..          .+ .++ +     .+++++++...+
T Consensus       179 ~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~-~~~-~-----~~~~~~~~~~~~  241 (451)
T 1pw4_A          179 MAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYK----------ND-YPD-D-----YNEKAEQELTAK  241 (451)
T ss_dssp             HHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTC----------CC--------------------CCT
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhc----------cc-ccc-c-----chhhhhcccccc
Confidence            665434999999998877766555 67788886532111111000          00 000 0     000011111112


Q ss_pred             chhHHHhhcccchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhh-
Q 013992          261 KINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRT-  339 (432)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-  339 (432)
                      +...++.++++.++...+..++..     ........+.|.|+++..+.+..+.+.......++.+++.++.+++.||+ 
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~  316 (451)
T 1pw4_A          242 QIFMQYVLPNKLLWYIAIANVFVY-----LLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVF  316 (451)
T ss_dssp             HHHHHHTSSCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             cchHHHHHcCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            222567788888776554443333     35677788899999987677788888999999999999999999999999 


Q ss_pred             -CCchhhHhHHHHHH-HHHHHHHHHHhccCCCCCccchhcccccccccccccccccccCccchhhhhccCCCCccccccc
Q 013992          340 -GRKKLLVISLSGVI-LSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASH  417 (432)
Q Consensus       340 -~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~g~~~~~  417 (432)
                       ++|+.+..+..+.. +++.++... ...+.+......+..+.+.....+.......+..   |++.|++  +.|+.+..
T Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~g~--~~~~~~~~  390 (451)
T 1pw4_A          317 RGNRGATGVFFMTLVTIATIVYWMN-PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELA---PKKAAGT--AAGFTGLF  390 (451)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTTSC-CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTS---CTTHHHH--HHHHHHHH
T ss_pred             cCCchhHHHHHHHHHHHHHHHHHHh-cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHh---chhhhhh--HHHHHHHH
Confidence             99888877666555 333332221 1112122222222333322222222223334444   4488999  88887665


Q ss_pred             ccc
Q 013992          418 SNK  420 (432)
Q Consensus       418 ~~~  420 (432)
                      .+.
T Consensus       391 ~~~  393 (451)
T 1pw4_A          391 GYL  393 (451)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.96  E-value=4.8e-32  Score=251.96  Aligned_cols=261  Identities=15%  Similarity=0.079  Sum_probs=217.5

Q ss_pred             HHHHHhhcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHH
Q 013992           34 FSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGA  113 (432)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~  113 (432)
                      ..+++..+..+++.....+.+|.+.+++|.+..+.   +++.+.+.++..+++++.|+++||+|||++++.+..+..++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~---g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~   79 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAV---QSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLAT   79 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHH---HHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHH
Confidence            44556667778888889999999999999998888   999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHH
Q 013992          114 VIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLG  193 (432)
Q Consensus       114 ~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~  193 (432)
                      ++.++++|++.+++.|+++|++.+...+...+++.|++|+++|++++++.+....+|..+++.+++++.+..+ ||+.|+
T Consensus        80 ~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~  158 (375)
T 2gfp_A           80 LVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN-WRACYL  158 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHH-HHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc-HHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999988766 999999


Q ss_pred             hhHHHHHHHHHH-HhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhHHHhhcccc
Q 013992          194 VAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRT  272 (432)
Q Consensus       194 ~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (432)
                      +.++..++..+. .+++||+++..                                      +++++.+.+.++.+|+|+
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~~~~~~~~~  200 (375)
T 2gfp_A          159 FLLVLCAGVTFSMARWMPETRPVD--------------------------------------APRTRLLTSYKTLFGNSG  200 (375)
T ss_dssp             HHHHHHHHHHCCCCCSSCCCSTTT--------------------------------------CCCCCTTTCSTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCcccCCCC--------------------------------------cccccHHHHHHHHhcCcc
Confidence            988877776663 56678875310                                      011122334567778887


Q ss_pred             hhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 013992          273 VRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGR  341 (432)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~  341 (432)
                      ++...+..+..     .........+.|.|+++..+.++.+.+.......++.+++.++.+++.||.++
T Consensus       201 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~  264 (375)
T 2gfp_A          201 FNCYLLMLIGG-----LAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST  264 (375)
T ss_dssp             HHHHHHHHHHH-----HHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH
T ss_pred             hHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            76655443333     22556677778888777555567778888888889999999999999998876

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.95  E-value=3.4e-28  Score=234.32  Aligned_cols=356  Identities=16%  Similarity=0.067  Sum_probs=216.9

Q ss_pred             hhhhhhhhc-----cccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhcc-ccchHHHHHHHHHHHHHHHHHHHhCChhHH
Q 013992           52 GALLYIRDD-----FKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDR-FGRRTSILVADFLFFVGAVIMAAAPNPGAL  125 (432)
Q Consensus        52 ~~~~~i~~~-----~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~  125 (432)
                      ...+++.++     +|.+..+.   +++.+.+.++..+++++.|+++|| +|||++++.+.++.+++.+++++++|++.+
T Consensus        35 ~~~~~~~~~~~~~~~~~s~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (491)
T 4aps_A           35 ILLYYMWFLISTGDLHITRATA---ASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASAL  111 (491)
T ss_dssp             HHHHHHHHHHHHTSCCSCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHH
T ss_pred             HHHHHHHhccchhhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            334445555     99988888   999999999999999999999999 899999999999999999999999999999


Q ss_pred             HHHHhhhhccccchhhhHHHHHHhcCCccc--chhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHHHHHH
Q 013992          126 ITGRVFVGLGVGMASMTSPLYISEASPAKI--RGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQF  203 (432)
Q Consensus       126 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~--R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~~~~~  203 (432)
                      +++|+++|++.+...+...+++.|++|+++  |+.++++++.+..+|..++|.+++.+.+..+ ||+.|++.++..++..
T Consensus       112 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~  190 (491)
T 4aps_A          112 FGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAG-YHVAFSLAAIGMFIGL  190 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999988  7778888999999999999999999988776 9999999887766665


Q ss_pred             HHHhhc-CCCH----HHHHHcCCHHHHHHHHHH----------------hCCCCchHHHHHHHH---HHhH-HHHHHccC
Q 013992          204 ILMLLL-PESP----RWLYRKGREEEAQAILRK----------------VYPAHEVETEIRDLK---ESVD-KEIEEEGS  258 (432)
Q Consensus       204 ~~~~~~-~e~~----~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~---~~~~-~~~~~~~~  258 (432)
                      +..++. ++..    +...++.+.++..+..+.                .....+.+.......   .... .......+
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (491)
T 4aps_A          191 LVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMIS  270 (491)
T ss_dssp             HHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhh
Confidence            554332 2211    000011122222222221                001111111000000   0000 00000001


Q ss_pred             ccchhHHHhhcccchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013992          259 SEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDR  338 (432)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~  338 (432)
                      +++....+..+....+...+..     +..+..+.....+.|.|.++..+.+....+.......+..+++.++.+++.||
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r  345 (491)
T 4aps_A          271 SVKVTSTEHLRVVSYIPLFIAA-----VLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTA  345 (491)
T ss_dssp             -----------CTTHHHHHHHH-----HHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHHHHHHHH-----HHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHH
Confidence            1111111111111111111111     11122334444566778877655554556666777788888999999999999


Q ss_pred             hCCchhhH-----hHHHHHHHHHHHHHHHHhc------cCCCCCccchhcccccccccccccccccccCccchhhhhccC
Q 013992          339 TGRKKLLV-----ISLSGVILSLGVLSAVFHE------TTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKAS  407 (432)
Q Consensus       339 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~  407 (432)
                      ++||+...     .+..+..+++.++......      .+.+......++.+.+.....+.......   +..|++.|++
T Consensus       346 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~---~~~p~~~~g~  422 (491)
T 4aps_A          346 WKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTT---KLAPKAFNSQ  422 (491)
T ss_dssp             TTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHH---HHTTTTCSSS
T ss_pred             HhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHH---HhCCHHHHHH
Confidence            99986554     5556566655554443211      11111122222222222222222222223   3455599999


Q ss_pred             CCCccccccccccc
Q 013992          408 SPDCGFCASHSNKV  421 (432)
Q Consensus       408 ~~~~g~~~~~~~~~  421 (432)
                        +.|+.....+..
T Consensus       423 --~~g~~~~~~~~g  434 (491)
T 4aps_A          423 --MMSMWFLSSSVG  434 (491)
T ss_dssp             --STHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHH
Confidence              999876655443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.89  E-value=2.3e-25  Score=209.75  Aligned_cols=272  Identities=12%  Similarity=0.038  Sum_probs=171.2

Q ss_pred             cccchhhhh-hhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHH---HHHHhCCh-
Q 013992           48 GVISGALLY-IRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAV---IMAAAPNP-  122 (432)
Q Consensus        48 ~~~~~~~~~-i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~---~~~~~~~~-  122 (432)
                      ....+.+|. +.+++|.+..+.   +++.+.+.++..++++++|+++||+|||++++.+..+.+++..   ...+.+.. 
T Consensus        24 ~~~~~~~~~~l~~~~g~s~~~~---g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~  100 (417)
T 2cfq_A           24 GAYFPFFPIWLHDINHISKSDT---GIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQ  100 (417)
T ss_dssp             HHHTTTHHHHHHTTTCCCTTTS---HHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455565 556789998888   9999999999999999999999999999999998887755321   11222211 


Q ss_pred             hHHHHHHhhhhccccchhhhHHHHHHhcCCc--ccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHHH
Q 013992          123 GALITGRVFVGLGVGMASMTSPLYISEASPA--KIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPAL  200 (432)
Q Consensus       123 ~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~~  200 (432)
                      ..+...+.+.|++.+...+.......++.++  ++|+...+.......+|..++|.+++++.+.  +||+.|++.++..+
T Consensus       101 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~--~~~~~f~~~~~~~~  178 (417)
T 2cfq_A          101 YNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI--NNQFVFWLGSGCAL  178 (417)
T ss_dssp             TTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHH--CSHHHHTTTTTTTT
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHh--chhHHHHHHHHHHH
Confidence            1233455666665555444444444444433  3457777777777788999999999988764  49999998877655


Q ss_pred             HHHHHHhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhHHHhhcccchhHHHHHH
Q 013992          201 LQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAG  280 (432)
Q Consensus       201 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (432)
                      +..+..++.+|+++.   +.+.++           .               +++++++....+.++.+++|+++...+..
T Consensus       179 ~~~~~~~~~~~~~~~---~~~~~~-----------~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (417)
T 2cfq_A          179 ILAVLLFFAKTDAPS---SATVAN-----------A---------------VGANHSAFSLKLALELFRQPKLWFLSLYV  229 (417)
T ss_dssp             THHHHSCSSCCCCSC---SSCSSS-----------S---------------SSSCCCCCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHcCccccc---cccccc-----------c---------------cccccccccHHHHHHHhcCCchhhHHHHH
Confidence            555554444443210   000000           0               00000111223456778888877654432


Q ss_pred             HHHHHHhhhcchHHHHHhHHHHHHHcCCC---chhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhhHhHHHHHHHHHH
Q 013992          281 VGLQVFQQFVGINTVMYYSPTIVQLSGFA---SNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLG  357 (432)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~  357 (432)
                      +....     .+.....+.|.|+++....   +....+.......++.+++.++.++++||++||+.+..+..+..+...
T Consensus       230 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~  304 (417)
T 2cfq_A          230 IGVSC-----TYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRII  304 (417)
T ss_dssp             HHHHH-----HHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHH-----HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHH
Confidence            22221     2334444577777665332   123445666667778889999999999999999988877766665543


Q ss_pred             H
Q 013992          358 V  358 (432)
Q Consensus       358 ~  358 (432)
                      .
T Consensus       305 ~  305 (417)
T 2cfq_A          305 G  305 (417)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.87  E-value=9.9e-24  Score=204.78  Aligned_cols=152  Identities=18%  Similarity=0.322  Sum_probs=136.5

Q ss_pred             hhhhhhhccc------cchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccc-cchHHHHHHHHHHHHHHHHHHHhC-ChhH
Q 013992           53 ALLYIRDDFK------SVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRF-GRRTSILVADFLFFVGAVIMAAAP-NPGA  124 (432)
Q Consensus        53 ~~~~i~~~~~------~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~~  124 (432)
                      ..+++.+++|      .+..+.   +++.+.+.++..++.++.|+++||+ |||+++..+.++.+++.++.++++ +++.
T Consensus        35 l~~~l~~~~~~~~~~~~s~~~~---g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (524)
T 2xut_A           35 LTPFLMTALLLSIPEELRGAVA---KDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQG  111 (524)
T ss_dssp             HHHHHHHSCSSCCSSSTTTTTH---HHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHH
T ss_pred             HHHHHHHHhccccccccCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHH
Confidence            3345677888      888888   9999999999999999999999999 999999999999999999999999 9999


Q ss_pred             HHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHH---HHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHHHH
Q 013992          125 LITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVST---NGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALL  201 (432)
Q Consensus       125 ~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~---~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~~~  201 (432)
                      +++.|+++|++.+...+...+++.|++|+++|+++.+.   .+....+|..++|.+++.+.+..+ ||+.|++.++..++
T Consensus       112 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-~~~~f~~~~~~~~~  190 (524)
T 2xut_A          112 FYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFG-AAVAFGIPGVLMFV  190 (524)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSC-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999876666   889999999999999999988776 99999998887766


Q ss_pred             HHHHHhh
Q 013992          202 QFILMLL  208 (432)
Q Consensus       202 ~~~~~~~  208 (432)
                      ..+.+++
T Consensus       191 ~~~~~~~  197 (524)
T 2xut_A          191 ATVFFWL  197 (524)
T ss_dssp             HHHHHHS
T ss_pred             HHHHHHH
Confidence            6655443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.56  E-value=4.8e-14  Score=133.75  Aligned_cols=165  Identities=18%  Similarity=0.131  Sum_probs=137.3

Q ss_pred             cccceeccccchhhhhhhhc-cccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccc--cchHHHHHHHHHHH-HHHHHH
Q 013992           41 LLFGYDTGVISGALLYIRDD-FKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRF--GRRTSILVADFLFF-VGAVIM  116 (432)
Q Consensus        41 ~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~--Grr~~l~~~~~~~~-~~~~~~  116 (432)
                      +.............|.+.++ +|.+..+.   +++.+...++..++.++.|++.||+  |||+.+..+..+.. ++.++.
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (451)
T 1pw4_A          262 VFVYLLRYGILDWSPTYLKEVKHFALDKS---SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVY  338 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHBTTBSCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Confidence            33334444455666766655 88888887   9999999999999999999999999  99999888877776 666666


Q ss_pred             HHh--CChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHH-HHHHHHHHHhhccCCCCchHHHHH
Q 013992          117 AAA--PNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITS-GQFLSYLINLAFTRAPGTWRWMLG  193 (432)
Q Consensus       117 ~~~--~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~-g~~i~~~i~~~l~~~~~~wr~~f~  193 (432)
                      .+.  .+.+.+.+..++.|++.+...+....++.|.+|+++|++++++.+....+ |..+++.+.+.+.+..+ |+..|+
T Consensus       339 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~  417 (451)
T 1pw4_A          339 WMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFM  417 (451)
T ss_dssp             TSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-SHHHHH
T ss_pred             HHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cHHHHH
Confidence            665  36777888888999998888888889999999999999999999999999 99999999999998887 999999


Q ss_pred             hhHHHHHHHHHHHhhc
Q 013992          194 VAGIPALLQFILMLLL  209 (432)
Q Consensus       194 ~~~~~~~~~~~~~~~~  209 (432)
                      +.++..++..++.+++
T Consensus       418 ~~~~~~~~~~~~~~~~  433 (451)
T 1pw4_A          418 VMIGGSILAVILLIVV  433 (451)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9888877777665544

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.47  E-value=4.6e-14  Score=132.50  Aligned_cols=141  Identities=12%  Similarity=0.095  Sum_probs=119.6

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhhccccchhhhHHHHHHhcC
Q 013992           72 ESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEAS  151 (432)
Q Consensus        72 ~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~  151 (432)
                      ++..+...++..++.++.|+++||+|||+++..+..+.+++.++.++.++.+.+++..++.+++.+...+....++.|.+
T Consensus       262 g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  341 (417)
T 2cfq_A          262 GYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQF  341 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            77778888888899999999999999999999999888888777788888888888888888887777777788999999


Q ss_pred             CcccchhHHHH-HHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHHHHHHHH-HhhcCCCH
Q 013992          152 PAKIRGALVST-NGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFIL-MLLLPESP  213 (432)
Q Consensus       152 ~~~~R~~~~~~-~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~~  213 (432)
                      |++.|+.+.+. ++....+|..++|.+++++.+..+ ++..|.+.++..++..++ ++..||++
T Consensus       342 p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~~~~~~~~  404 (417)
T 2cfq_A          342 EVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGAYLVLGLVALGFTLISVFTLSGPG  404 (417)
T ss_dssp             CHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSH-HHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred             CHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence            99999999988 477888999999999999887665 888998888877777666 44456653

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.42  E-value=2.5e-13  Score=128.28  Aligned_cols=154  Identities=12%  Similarity=-0.012  Sum_probs=123.6

Q ss_pred             cchhhhhh-h-hccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHhCChhHHHH
Q 013992           50 ISGALLYI-R-DDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALIT  127 (432)
Q Consensus        50 ~~~~~~~i-~-~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~  127 (432)
                      .....|.+ . +.+|.+..+.   ++..+...++..++.++.|+++||+|||+++..+.++..++.++..+.++.+.++.
T Consensus       277 ~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (438)
T 3o7q_A          277 CWSYLIRYAVEEIPGMTAGFA---ANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIA  353 (438)
T ss_dssp             HHHHHHHHHHHHSTTCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred             HHHHHHHHhhhccCCcchhHH---HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence            33444544 4 4458888888   89999999999999999999999999999999999999999988888887766554


Q ss_pred             HHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHHHHHHHHHh
Q 013992          128 GRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILML  207 (432)
Q Consensus       128 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~  207 (432)
                      . ++.|++.+...+...++..|.+|++ |+.+.++.. ...+|..++|.+.+.+.+..++++..|++.++..++..+..+
T Consensus       354 ~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  430 (438)
T 3o7q_A          354 L-TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFAR  430 (438)
T ss_dssp             H-HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHHHT
T ss_pred             H-HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence            4 8889999999999999999999976 888888776 566999999999999988765588888876655444444333


Q ss_pred             hc
Q 013992          208 LL  209 (432)
Q Consensus       208 ~~  209 (432)
                      ..
T Consensus       431 ~~  432 (438)
T 3o7q_A          431 FR  432 (438)
T ss_dssp             TC
T ss_pred             HH
Confidence            33

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.40  E-value=3.7e-13  Score=129.14  Aligned_cols=164  Identities=12%  Similarity=0.057  Sum_probs=115.2

Q ss_pred             eccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHh---C-C
Q 013992           46 DTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAA---P-N  121 (432)
Q Consensus        46 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~-~  121 (432)
                      ....+....|.+.++.+.+..+.   ........+...++.++.+++.||+|||+.++.+.....++.+..+..   . +
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~  368 (491)
T 4gc0_A          292 GINVVLYYAPEVFKTLGASTDIA---LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAP  368 (491)
T ss_dssp             CHHHHHHHHHHHHHHSSCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             hhhHHHhcchHHHHhcCCCccch---hhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccc
Confidence            33445556677777777766666   556666777888999999999999999999999988888877665432   1 2


Q ss_pred             hhHHHHHHhh-hhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCC-----chHHHHHhh
Q 013992          122 PGALITGRVF-VGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPG-----TWRWMLGVA  195 (432)
Q Consensus       122 ~~~~~~~r~l-~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~-----~wr~~f~~~  195 (432)
                      ....++.-++ .+.......+....+.+|.+|++.|++++++......+|..+++.+.+.+.+...     ++.+.|++.
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~  448 (491)
T 4gc0_A          369 GIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIY  448 (491)
T ss_dssp             HHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence            2222222222 2222222456777899999999999999999999999999888877766544210     244567777


Q ss_pred             HHHHHHHHHH-HhhcCCC
Q 013992          196 GIPALLQFIL-MLLLPES  212 (432)
Q Consensus       196 ~~~~~~~~~~-~~~~~e~  212 (432)
                      +.++++..+. ++++||+
T Consensus       449 ~~~~~~~~i~~~~~~PET  466 (491)
T 4gc0_A          449 GCMGVLAALFMWKFVPET  466 (491)
T ss_dssp             HHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHHHHHHheecCC
Confidence            7777766655 7889999

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.36  E-value=1.3e-12  Score=125.29  Aligned_cols=158  Identities=13%  Similarity=0.066  Sum_probs=118.9

Q ss_pred             cchhhhhhh-hccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHH-----HHHHHHHHHHHHHHHh----
Q 013992           50 ISGALLYIR-DDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSIL-----VADFLFFVGAVIMAAA----  119 (432)
Q Consensus        50 ~~~~~~~i~-~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~-----~~~~~~~~~~~~~~~~----  119 (432)
                      ....+|... +.++.+..+.   +++.+...++..++.++.+++.||+|||+...     .+.++.+++.++....    
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (491)
T 4aps_A          302 GSVVLATFAAERVDSSWFPV---SWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALY  378 (491)
T ss_dssp             GGTHHHHHHHHSCCCSSSCS---GGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHC
T ss_pred             ccHHHHHHHHHHhccCccCH---HHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            334444443 4455554455   66778888888899999999999999987655     7777777776666553    


Q ss_pred             -----CChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHh
Q 013992          120 -----PNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGV  194 (432)
Q Consensus       120 -----~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~  194 (432)
                           .+.+.+.+.-++.|++.+...+....++.|.+|+++|+++.++......+|..+++.+.+.+.+.  ++.+.|.+
T Consensus       379 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~--~~~~~~~~  456 (491)
T 4aps_A          379 GTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK--SEVAYFSY  456 (491)
T ss_dssp             CCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS--STTHHHHH
T ss_pred             CCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cHHHHHHH
Confidence                 27777888889999999998999999999999999999999999999999999999999988776  36677777


Q ss_pred             hHHHHHHHHHHHh-hcCCC
Q 013992          195 AGIPALLQFILML-LLPES  212 (432)
Q Consensus       195 ~~~~~~~~~~~~~-~~~e~  212 (432)
                      .+..+++..+..+ +.++.
T Consensus       457 ~~~~~~~~~~~~~~~~~~~  475 (491)
T 4aps_A          457 FGLGSVVLGIVLVFLSKRI  475 (491)
T ss_dssp             THHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            7776666665544 44443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.02  E-value=2.7e-11  Score=111.83  Aligned_cols=149  Identities=14%  Similarity=0.046  Sum_probs=109.4

Q ss_pred             cccceeccccchhhhhhhhc-cccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHH-HHHHHH--HH
Q 013992           41 LLFGYDTGVISGALLYIRDD-FKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFL-FFVGAV--IM  116 (432)
Q Consensus        41 ~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~-~~~~~~--~~  116 (432)
                      +.............|.+.++ +|.+..+.   +++.+...++..++.++.+++.||+|+|.  ..+... ...+..  ..
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~  283 (375)
T 2gfp_A          209 IGGLAGIAAFEACSGVLMGAVLGLSSMTV---SILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIP  283 (375)
T ss_dssp             HHHHHHHHHHHHHCSCSSHHHHHHHHHHH---HHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence            33333444455556665554 77777777   89999999999999999999999998832  233322 222221  22


Q ss_pred             HH--hCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHh
Q 013992          117 AA--APNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGV  194 (432)
Q Consensus       117 ~~--~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~  194 (432)
                      ..  .++.+.+.+..++.|++.+...+....++.|..| ++|+++.++.+....+|..+++.+.+.+.+..+ |+..+++
T Consensus       284 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~-~~~~~~~  361 (375)
T 2gfp_A          284 DWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQ-GSLGLLM  361 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHH-HHHHHHH
T ss_pred             hhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccHHHHH
Confidence            22  2366777788899999999999999999999998 789999999999999999999998888766443 7766665


Q ss_pred             hH
Q 013992          195 AG  196 (432)
Q Consensus       195 ~~  196 (432)
                      .+
T Consensus       362 ~~  363 (375)
T 2gfp_A          362 TL  363 (375)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.90  E-value=2.7e-09  Score=103.11  Aligned_cols=137  Identities=12%  Similarity=0.111  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhh----ccccc----hHHHHHHHHHHHHHHHHHHHh---------CChhHHHHHHhhhhc
Q 013992           72 ESIVSMAVAGAIIGAAIGGWMN----DRFGR----RTSILVADFLFFVGAVIMAAA---------PNPGALITGRVFVGL  134 (432)
Q Consensus        72 ~~~~s~~~~~~~i~~~~~g~l~----dr~Gr----r~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~r~l~G~  134 (432)
                      +.+.....++..++.++.+++.    ||.|+    ++.+..+.++.+++.++.++.         .+.+.+++..++.|+
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~  417 (524)
T 2xut_A          338 AMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTF  417 (524)
T ss_dssp             HHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHH
Confidence            5566666666777777777764    55543    356677888888877776664         367778888899999


Q ss_pred             cccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCC-ch---------HHHHHhhHHHHHHHHH
Q 013992          135 GVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPG-TW---------RWMLGVAGIPALLQFI  204 (432)
Q Consensus       135 ~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~-~w---------r~~f~~~~~~~~~~~~  204 (432)
                      +.+...+....++.|..|+++|++++++.+....+|..+++.+.+.+.+..+ +|         +..|++.+...++..+
T Consensus       418 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  497 (524)
T 2xut_A          418 GEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAI  497 (524)
T ss_dssp             HHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999887421 24         4446666666666655


Q ss_pred             HHhh
Q 013992          205 LMLL  208 (432)
Q Consensus       205 ~~~~  208 (432)
                      +.++
T Consensus       498 ~~~~  501 (524)
T 2xut_A          498 VFAL  501 (524)
T ss_dssp             HHC-
T ss_pred             HHHH
Confidence            5443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	432
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	6e-17
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	1e-04
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	4e-08

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 80.1 bits (196), Expect = 6e-17
 Identities = 44/353 (12%), Positives = 100/353 (28%), Gaps = 29/353 (8%)

Query: 28  YVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAA 87
              ++      G   +       + A+ Y+ +   S           +S           
Sbjct: 22  LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGF----ALSGISIAYGFSKF 77

Query: 88  IGGWMNDRFGRRTSILVADFLFFVGAVIM----AAAPNPGALITGRVFVGLGVGMASMTS 143
           I G ++DR   R  +     L     + M     A  +   +       G   GM     
Sbjct: 78  IMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPC 137

Query: 144 PLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQF 203
              +      K RG +VS        G  +  L+ L        W   L +    A+L  
Sbjct: 138 GRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVA 197

Query: 204 ILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKIN 263
           +    +             EE +                 D  +  +++ E+E ++++I 
Sbjct: 198 LFAFAMMRDTPQSCGLPPIEEYK----------------NDYPDDYNEKAEQELTAKQIF 241

Query: 264 LVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSG 323
           +  +L  + +    IA         ++    ++ +SPT ++     +   +     +   
Sbjct: 242 MQYVLPNKLLWYIAIAN-----VFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEY 296

Query: 324 LNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAV 376
               G+++  +  D+  R       +  + L        +     +  +    
Sbjct: 297 AGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMIC 349

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 27/155 (17%), Positives = 53/155 (34%), Gaps = 5/155 (3%)

Query: 74  IVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAA-----APNPGALITG 128
              +     I G  + GWM+D+  R        F   +  +         A NP   +  
Sbjct: 290 AYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMIC 349

Query: 129 RVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTW 188
            + +G  +    M   L+  E +P K  G      G     G  ++    + +T     W
Sbjct: 350 MIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGW 409

Query: 189 RWMLGVAGIPALLQFILMLLLPESPRWLYRKGREE 223
                V    ++L  IL++++    +  + +  +E
Sbjct: 410 DGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQE 444

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 52.5 bits (124), Expect = 4e-08
 Identities = 24/212 (11%), Positives = 50/212 (23%), Gaps = 11/212 (5%)

Query: 25  KNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAII 84
           KN               + G          +++ D        T +   I +     +++
Sbjct: 5   KNTNFWMFGLFFFFYFFIMGAYFPFFP---IWLHDINHISKSDTGI---IFAAISLFSLL 58

Query: 85  GAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSP 144
              + G ++D+ G R  +L       V             L    +   +  G+      
Sbjct: 59  FQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCF 118

Query: 145 LYISEASPAKIRGALVSTNGFLITSGQFLSYLINLA-----FTRAPGTWRWMLGVAGIPA 199
              + A  A I      +N     +  F      L                    +G   
Sbjct: 119 NAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCAL 178

Query: 200 LLQFILMLLLPESPRWLYRKGREEEAQAILRK 231
           +L  +L     ++P             +    
Sbjct: 179 ILAVLLFFAKTDAPSSATVANAVGANHSAFSL 210

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	432
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	100.0
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.86
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.59
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.36

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.2e-34  Score=271.66  Aligned_cols=363  Identities=13%  Similarity=0.047  Sum_probs=256.8

Q ss_pred             ChhHHHHHHHHHHhhcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHH
Q 013992           26 NPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVA  105 (432)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~  105 (432)
                      ++++|..+..++++.+..++++..++.+.|.+. |+|.+..+.   +++.+++.+++.++++++|+++||+|||+++..+
T Consensus        20 ~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~---g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~   95 (447)
T d1pw4a_          20 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDL---GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAG   95 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCH---HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence            456788888888888999999888998889875 589999999   9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHh----CChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhc
Q 013992          106 DFLFFVGAVIMAAA----PNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAF  181 (432)
Q Consensus       106 ~~~~~~~~~~~~~~----~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l  181 (432)
                      .++.+++.++++++    ++++.+++.|++.|++.+...+....++.|++|+++|++++++.+.+..+|..+++.+++.+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~  175 (447)
T d1pw4a_          96 LILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG  175 (447)
T ss_dssp             HHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred             HHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhH
Confidence            99999999988775    58899999999999999999999999999999999999999999999999999999998887


Q ss_pred             cCCCCchHHHHHhhHHHHHHHHHH-HhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCcc
Q 013992          182 TRAPGTWRWMLGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSE  260 (432)
Q Consensus       182 ~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (432)
                      ....++||+.|++.+++.++..++ +++.+|+|+....+...++..                 +..+...++.+++...+
T Consensus       176 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~  238 (447)
T d1pw4a_         176 MAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKN-----------------DYPDDYNEKAEQELTAK  238 (447)
T ss_dssp             HHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCC-----------------C-------------CCT
T ss_pred             hhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhh-----------------hcccchhhccccccchh
Confidence            766556999999988777766665 555666654211111111000                 00000111112222233


Q ss_pred             chhHHHhhcccchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 013992          261 KINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTG  340 (432)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~  340 (432)
                      +...++.++++.++......++.     ....+....+.|.|+++..+.+..+.+.......+..+++.++.|++.||.+
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  313 (447)
T d1pw4a_         239 QIFMQYVLPNKLLWYIAIANVFV-----YLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVF  313 (447)
T ss_dssp             HHHHHHTSSCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             hHHHHHHHcCchHHHHHHHhhhh-----hhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhcc
Confidence            44456677777776544433332     3356677788899998888888888999999999999999999999999999


Q ss_pred             CchhhHhHHHHHHHHHHHHHHHHhccCCC--CCccchhcccccccccccccccccccCccchhhhhccCCCCcccccccc
Q 013992          341 RKKLLVISLSGVILSLGVLSAVFHETTSH--SPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHS  418 (432)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~g~~~~~~  418 (432)
                      |++..........+...............  ...+..+..++......+.......+..|   ++.|++  +.|+.+...
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p---~~~~g~--~~g~~~~~~  388 (447)
T d1pw4a_         314 RGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAP---KKAAGT--AAGFTGLFG  388 (447)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSC---TTHHHH--HHHHHHHHH
T ss_pred             ccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---HHHHHH--HHHHHHHHH
Confidence            87655444443333333332222221111  11222222222222222222333344444   489999  888775544


Q ss_pred             c
Q 013992          419 N  419 (432)
Q Consensus       419 ~  419 (432)
                      +
T Consensus       389 ~  389 (447)
T d1pw4a_         389 Y  389 (447)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=2.4e-22  Score=185.90  Aligned_cols=329  Identities=11%  Similarity=0.012  Sum_probs=201.7

Q ss_pred             cccceeccccchhhhh-hhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHh
Q 013992           41 LLFGYDTGVISGALLY-IRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAA  119 (432)
Q Consensus        41 ~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~  119 (432)
                      +...+......+.+|. +.+++|.++.+.   |++.+++.++..++++++|+++||+||||+++.+..+..++..+..+.
T Consensus        17 f~~~~~~~~~~~~l~~~l~~~~g~s~~~~---g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~   93 (417)
T d1pv7a_          17 FFYFFIMGAYFPFFPIWLHDINHISKSDT---GIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIF   93 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCCHHHH---HHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHh
Confidence            4444555556677775 667789999998   999999999999999999999999999999999999999998888887


Q ss_pred             CChhHH----HHHHhhhhccccchhhhHHHHHHhcCCc--ccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHH
Q 013992          120 PNPGAL----ITGRVFVGLGVGMASMTSPLYISEASPA--KIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLG  193 (432)
Q Consensus       120 ~~~~~~----~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~  193 (432)
                      .+....    .+.+.+.+.+.+...........+..++  +++.+..+........+..+++.+++.+.+.  +|+..+.
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~  171 (417)
T d1pv7a_          94 IFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI--NNQFVFW  171 (417)
T ss_dssp             THHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH--CHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc--ccccccc
Confidence            765543    3445555555555544444444443332  3345667777788888999999999988776  3555555


Q ss_pred             hhHHH-HHHHHHHHhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhHHHhhcccc
Q 013992          194 VAGIP-ALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRT  272 (432)
Q Consensus       194 ~~~~~-~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (432)
                      ..... .+...+..+..+|+++.    .+.+                          +++++++++.......+..+++.
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~  221 (417)
T d1pv7a_         172 LGSGCALILAVLLFFAKTDAPSS----ATVA--------------------------NAVGANHSAFSLKLALELFRQPK  221 (417)
T ss_dssp             HHHHHHHHHHHHHHSSCCCSCSS----SCSS--------------------------HHHHSCCCCCCHHHHHHHTTSSH
T ss_pred             chhhHHHHHHHHHHHHhcccccc----hhhh--------------------------hhhhhhccccccccccccccccc
Confidence            55544 44444446666666431    0000                          01111222223333444555555


Q ss_pred             hhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcC---CCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhhHhHH
Q 013992          273 VRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSG---FASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISL  349 (432)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~  349 (432)
                      .+...........     .........+.+.....   ..+....+.......++..++..+.+++.||.++|+.+.++.
T Consensus       222 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~  296 (417)
T d1pv7a_         222 LWFLSLYVIGVSC-----TYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAG  296 (417)
T ss_dssp             HHHHHHHHHHHHH-----HHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHH
T ss_pred             ccchhhhhHHHHH-----HHHhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhH
Confidence            4443333222222     12222222223322222   123445566667777888899999999999999999998888


Q ss_pred             HHHHHHHHHHHHHHhccCCCCCccchhcccccccccccccccccccCccchhhhhccCCCCccccccc
Q 013992          350 SGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASH  417 (432)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~g~~~~~  417 (432)
                      .+..++.+.+...   .+.+......++.+.+.....+.......+.   +|++.|++  ..|+..+.
T Consensus       297 ~~~~~~~~~~~~~---~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~  356 (417)
T d1pv7a_         297 TIMSVRIIGSSFA---TSALEVVILKTLHMFEVPFLLVGCFKYITSQ---FEVRFSAT--IYLVCFCF  356 (417)
T ss_dssp             HHHHHHHHHHHTC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---SCGGGHHH--HHHHHHTT
T ss_pred             HHHHHhhhccccc---cccchhhHHHHHHHHHHHHHHHHHHHHHHHH---CCHhHHHH--HHHHHHHH
Confidence            7777766554442   2233333333344444333333333333444   45599999  88876543

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.59  E-value=7e-16  Score=141.76  Aligned_cols=140  Identities=12%  Similarity=0.103  Sum_probs=125.7

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhhccccchhhhHHHHHHhcC
Q 013992           72 ESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEAS  151 (432)
Q Consensus        72 ~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~  151 (432)
                      +...+...++..++..+.+++.||+|||+++..+.++.+++.++..+.++.+.+++..++.|++.+...+...+++.|.+
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~  341 (417)
T d1pv7a_         262 GYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQF  341 (417)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             cccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            77788888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccchhHHHHH-HHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHHHHHHHH-HhhcCCC
Q 013992          152 PAKIRGALVSTN-GFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFIL-MLLLPES  212 (432)
Q Consensus       152 ~~~~R~~~~~~~-~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~  212 (432)
                      |+++|++..+.. +....+|..++|.+.+++.+..+ |++.|++.+++.++..++ .+.++++
T Consensus       342 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~l~~~  403 (417)
T d1pv7a_         342 EVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGAYLVLGLVALGFTLISVFTLSGP  403 (417)
T ss_dssp             CGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred             CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            999999999975 56678999999999999998887 999999988877776666 4555443

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.36  E-value=1.8e-12  Score=120.35  Aligned_cols=151  Identities=19%  Similarity=0.180  Sum_probs=117.0

Q ss_pred             hhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHH-----hCChhHHHHH
Q 013992           54 LLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAA-----APNPGALITG  128 (432)
Q Consensus        54 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~  128 (432)
                      ..++.+.++.+..+.   ++..+...++..++.++.|++.||++||+..........+.......     ..+.+...+.
T Consensus       273 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (447)
T d1pw4a_         273 PTYLKEVKHFALDKS---SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMIC  349 (447)
T ss_dssp             HHHBTTBSCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHH
T ss_pred             hhhcccccccccchh---hhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHH
Confidence            344556678888777   88999999999999999999999999876544444333333222221     3567777788


Q ss_pred             HhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHH-HHHHHHHHHhhccCCCCchHHHHHhhHHHHHHHHHHHh
Q 013992          129 RVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITS-GQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILML  207 (432)
Q Consensus       129 r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~-g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~  207 (432)
                      -++.|++.+...+....+..|.+|+++|+++.++.+....+ |..++|.+.+++.+..+ |+..|++.+...++..++..
T Consensus       350 ~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~  428 (447)
T d1pw4a_         350 MIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAVILLI  428 (447)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-SHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHH
Confidence            88889988888888889999999999999999998877666 56778999999999887 99999888777766666544


Q ss_pred             h
Q 013992          208 L  208 (432)
Q Consensus       208 ~  208 (432)
                      .
T Consensus       429 ~  429 (447)
T d1pw4a_         429 V  429 (447)
T ss_dssp             H
T ss_pred             H
Confidence            3