Citrus Sinensis ID: 013998

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430--
Protein Sequence
MDENSKEKENESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFECRDVHINNDADTNLVSQRNDPAYCDIEADRKGEASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIEELQRNLFQVI
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHcccHHHHHHHHHcccHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MDENSKEKENESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLdsaemwsfndtstSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKTqhcddvirgqntgtyqretkldefecrdvhinndadtnlvsqrndpaycdieadrkGEASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIEELQRNLFQVI
Flexible Loop (DISEMBL)
mdenskekeneseALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKtqhcddvirgqntgtyqreTKLDEFECRDVHinndadtnlvsqrndPAYCDIEADRKGEASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIEELQRNLFQVI
Low Complexity Region (SEG)
MDenskekeneseALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMeaekakekeeLMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFECRDVHINNDADTNLVSQRNDPAYCDIEADRKGEASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIEELQRNLFQVI
Disordered region (IsUnstruct)
*********************************EQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACAREN**L**ELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFA***********************************************************SFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYI*********************************SVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFECRDVHINNDADTNLV******AYCD******************EKVAALLLL********************************
Disordered Region (DISOPRED)
***********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************CDIEADRKGEASETLAQALQEKVA*****************VNSALQKKIEELQRNLFQV*
Disordered Region (DISEMBL)
**************LMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALE***********NLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFECRDVHINNDADTNLVSQRNDPAYCDIEADRKGEASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIEELQRNLFQVI
Disordered Region (DISPRO)
*********NESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNT*****ETKLDEFECRDVHINNDA**********************EASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIEELQRNLFQVI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDENxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQAGPSYLAVATRMHFQRxxxxxxxxxxxxxxxxxxxxxxxxxxxxLSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAxxxxxxxxxxxxxxxxxxxxxLMSQKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYxxxxxxxxxxxxxxxxxxxxxLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFECRDVHINNDADTNLVSQRNDPAYCDIEADRKGEASETLAQALQEKVAALLxxxxxxxxxxxxxxxxxxxxxKIEELQRNLFQVI
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	432
255583327	658	conserved hypothetical protein [Ricinus	0.969	0.636	0.695	1e-149
359475478	721	PREDICTED: uncharacterized protein LOC10	0.981	0.588	0.675	1e-148
296083035	673	unnamed protein product [Vitis vinifera]	0.981	0.630	0.675	1e-148
356495819	653	PREDICTED: uncharacterized protein LOC10	0.969	0.641	0.642	1e-135
297831932	629	predicted protein [Arabidopsis lyrata su	0.983	0.675	0.606	1e-129
15225987	629	myosin heavy chain-related protein [Arab	0.981	0.674	0.605	1e-129
238479244	652	myosin heavy chain-related protein [Arab	0.981	0.650	0.605	1e-128
357480651	586	hypothetical protein MTR_5g005010 [Medic	0.993	0.732	0.576	1e-126
449438615	641	PREDICTED: uncharacterized protein LOC10	0.944	0.636	0.602	1e-124
449479020	641	PREDICTED: uncharacterized LOC101211967	0.944	0.636	0.598	1e-123

>gi|255583327|ref|XP_002532426.1| conserved hypothetical protein [Ricinus communis] gi|223527875|gb|EEF29967.1| conserved hypothetical protein [Ricinus communis]

 Score =  535 bits (1378), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 293/421 (69%), Positives = 335/421 (79%), Gaps = 2/421 (0%)

Query: 12  SEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKI 71
           +E+L+ARIQQLEHERDEL KDIEQLCMQQAGPSYLAVAT+MHFQRTAGLEQEIE LK+K+
Sbjct: 8   NESLIARIQQLEHERDELHKDIEQLCMQQAGPSYLAVATKMHFQRTAGLEQEIENLKKKL 67

Query: 72  AACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSV 131
           AAC R+N NLQEELSEAYRIK QLADLH AEV KN EAEKQ+KFFQGC+A+AFAERDNS+
Sbjct: 68  AACTRDNLNLQEELSEAYRIKSQLADLHNAEVAKNKEAEKQLKFFQGCVASAFAERDNSI 127

Query: 132 MEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVIN 191
           MEAEKAKEKEELMSQKFNEFQ RLEEL+S+ +E K+QN  L+ +L KQEE NES K+V N
Sbjct: 128 MEAEKAKEKEELMSQKFNEFQKRLEELTSDCLEQKRQNEALQINLAKQEEQNESLKKVAN 187

Query: 192 KFYEIRQQSLEVLE-TSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVEN 250
           KFYEIRQ SLE  E  SWEDKC  LL DS EMWS+ND STS YISALE+ELE+ R S +N
Sbjct: 188 KFYEIRQHSLEGFEDASWEDKCTWLLHDSKEMWSYNDASTSNYISALEEELEQVRKSADN 247

Query: 251 LQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRS 310
           LQSKLR+GLEIENHLKK VRELEKK I  DK + N IA LR  HS+ R H++N L EG+ 
Sbjct: 248 LQSKLRVGLEIENHLKKQVRELEKKQIQLDKMVMNGIAGLRHYHSEHRGHIMNLLNEGKL 307

Query: 311 HIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFECRDVHINNDADTNLVSQRNDPA 370
           H+KS  D++EEK        + QN    QR   L+E ECRDVHI+ND  + L+S+     
Sbjct: 308 HMKSTMDMLEEKIGETYGS-KEQNLRPSQRVIDLEENECRDVHISNDIGSALISEEVKHG 366

Query: 371 YCDIEADRKGEASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIEELQRNLFQ 430
             D   + +  +SE LAQ LQEKVAALLLLSQQEERHLLERNVN+ LQKK+EELQRNL Q
Sbjct: 367 LHDSGDNEEENSSEALAQVLQEKVAALLLLSQQEERHLLERNVNAVLQKKMEELQRNLLQ 426

Query: 431 V 431
           V
Sbjct: 427 V 427

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475478|ref|XP_002264967.2| PREDICTED: uncharacterized protein LOC100251573 [Vitis vinifera]

 Score =  531 bits (1368), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 290/429 (67%), Positives = 341/429 (79%), Gaps = 5/429 (1%)

Query: 7   EKENESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEI 66
           EK N++E+L+ARIQQLEHERDELRKDIEQLC+QQAGPSYL VATRMHFQRTAGLEQEIE 
Sbjct: 3   EKSNDNESLIARIQQLEHERDELRKDIEQLCIQQAGPSYLVVATRMHFQRTAGLEQEIEN 62

Query: 67  LKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAE 126
           LK+K+AA  REN NLQEELSEAYRIK QLADLH AEV KN++AEKQ+KFFQGC+AAAFAE
Sbjct: 63  LKKKVAASTRENLNLQEELSEAYRIKSQLADLHNAEVSKNLDAEKQIKFFQGCVAAAFAE 122

Query: 127 RDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESF 186
           RD+S+MEAEKAKEKEEL  Q+FN FQ R++EL S+N++ K+ N  L+ DL  QE+ NE+F
Sbjct: 123 RDHSIMEAEKAKEKEELALQEFNNFQKRIKELESDNLKQKQLNVALQIDLANQEDQNETF 182

Query: 187 KEVINKFYEIRQQSLEVLE-TSWEDKCACLLLDSAEMWSFN---DTSTSKYISALEDELE 242
           K+VINKF+EIRQ SLE  E  +W+DKC CLL D  EMWSFN   +TSTSKYI ALE+ELE
Sbjct: 183 KKVINKFFEIRQYSLEAFEDANWDDKCGCLLSDPVEMWSFNTNEETSTSKYIDALEEELE 242

Query: 243 KTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVV 302
             R+SV+NLQ+KLR+GLEIENHLKK V ELEK+ I S +   N I+ L   HSQ R+HVV
Sbjct: 243 MVRNSVDNLQNKLRVGLEIENHLKKKVSELEKQKIISHQMFKNRISGLLHYHSQHRLHVV 302

Query: 303 NSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFECRDVHINNDADTNL 362
           N L+EG+SH+KSI DV+EEK +   D  R QN    QR+ KL E ECRDVH++   D N 
Sbjct: 303 NLLDEGKSHLKSIIDVVEEKIRQL-DADREQNLEPPQRDLKLYENECRDVHVSIVGDHNS 361

Query: 363 VSQRNDPAYCDIEADRKGEASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIE 422
           V++ N P   +   D  G+ASE  AQA+QEKVAALLLLSQQEERHLLE NVN  LQKK+E
Sbjct: 362 VAESNIPGLKNNVIDGMGDASEAFAQAMQEKVAALLLLSQQEERHLLESNVNIVLQKKME 421

Query: 423 ELQRNLFQV 431
           ELQRNL QV
Sbjct: 422 ELQRNLLQV 430

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083035|emb|CBI22439.3| unnamed protein product [Vitis vinifera]

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 290/429 (67%), Positives = 341/429 (79%), Gaps = 5/429 (1%)

Query: 7   EKENESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEI 66
           EK N++E+L+ARIQQLEHERDELRKDIEQLC+QQAGPSYL VATRMHFQRTAGLEQEIE 
Sbjct: 3   EKSNDNESLIARIQQLEHERDELRKDIEQLCIQQAGPSYLVVATRMHFQRTAGLEQEIEN 62

Query: 67  LKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAE 126
           LK+K+AA  REN NLQEELSEAYRIK QLADLH AEV KN++AEKQ+KFFQGC+AAAFAE
Sbjct: 63  LKKKVAASTRENLNLQEELSEAYRIKSQLADLHNAEVSKNLDAEKQIKFFQGCVAAAFAE 122

Query: 127 RDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESF 186
           RD+S+MEAEKAKEKEEL  Q+FN FQ R++EL S+N++ K+ N  L+ DL  QE+ NE+F
Sbjct: 123 RDHSIMEAEKAKEKEELALQEFNNFQKRIKELESDNLKQKQLNVALQIDLANQEDQNETF 182

Query: 187 KEVINKFYEIRQQSLEVLE-TSWEDKCACLLLDSAEMWSFN---DTSTSKYISALEDELE 242
           K+VINKF+EIRQ SLE  E  +W+DKC CLL D  EMWSFN   +TSTSKYI ALE+ELE
Sbjct: 183 KKVINKFFEIRQYSLEAFEDANWDDKCGCLLSDPVEMWSFNTNEETSTSKYIDALEEELE 242

Query: 243 KTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVV 302
             R+SV+NLQ+KLR+GLEIENHLKK V ELEK+ I S +   N I+ L   HSQ R+HVV
Sbjct: 243 MVRNSVDNLQNKLRVGLEIENHLKKKVSELEKQKIISHQMFKNRISGLLHYHSQHRLHVV 302

Query: 303 NSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFECRDVHINNDADTNL 362
           N L+EG+SH+KSI DV+EEK +   D  R QN    QR+ KL E ECRDVH++   D N 
Sbjct: 303 NLLDEGKSHLKSIIDVVEEKIRQL-DADREQNLEPPQRDLKLYENECRDVHVSIVGDHNS 361

Query: 363 VSQRNDPAYCDIEADRKGEASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIE 422
           V++ N P   +   D  G+ASE  AQA+QEKVAALLLLSQQEERHLLE NVN  LQKK+E
Sbjct: 362 VAESNIPGLKNNVIDGMGDASEAFAQAMQEKVAALLLLSQQEERHLLESNVNIVLQKKME 421

Query: 423 ELQRNLFQV 431
           ELQRNL QV
Sbjct: 422 ELQRNLLQV 430

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495819|ref|XP_003516769.1| PREDICTED: uncharacterized protein LOC100775191 [Glycine max]

 Score =  486 bits (1252), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 271/422 (64%), Positives = 326/422 (77%), Gaps = 3/422 (0%)

Query: 11  ESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQK 70
           + E+L+ARIQQLE ERDELRKDIEQLCMQQAGP YLAVATRMHFQRTAGLEQEIE LK+K
Sbjct: 6   DDESLLARIQQLEQERDELRKDIEQLCMQQAGPGYLAVATRMHFQRTAGLEQEIESLKKK 65

Query: 71  IAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNS 130
           +AAC REN NLQEELSEAYRIKGQLADLH+AEV KNMEAEKQVKFFQGC+AAAF+ERD +
Sbjct: 66  LAACTRENLNLQEELSEAYRIKGQLADLHSAEVSKNMEAEKQVKFFQGCVAAAFSERDQA 125

Query: 131 VMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVI 190
           ++EAEKAKEKEE M Q+ N    R+EEL+S+ ++LK+ N  L+ D     + NE+  +VI
Sbjct: 126 IIEAEKAKEKEETMLQQINGIHKRVEELTSDCLKLKEFNDALQIDQAVHMKQNENCMKVI 185

Query: 191 NKFYEIRQQSLEVLE-TSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVE 249
           NKF++IRQ SL+  E  SW +KCACLL DS E+WSFND STSKYISALE++LE+ R+S++
Sbjct: 186 NKFFQIRQHSLKEFEDMSWNEKCACLLGDSEEVWSFNDASTSKYISALEEQLERLRNSMD 245

Query: 250 NLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGR 309
            LQ+KLR+GLEIENHLKK V  LE K I  DK I N+IA+L+  HS+ R  ++N L +G 
Sbjct: 246 YLQNKLRVGLEIENHLKKRVNALENKQISMDKVIENSIADLKHYHSKCRDEIMNLLGDGE 305

Query: 310 SHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFECRDVHINNDADTNLVSQRNDP 369
           S IKSI + I+EK    D  +      T QR+ + +E EC D+HI+  A     S+RN P
Sbjct: 306 SSIKSIINAIDEKVWSFD--LSTVPNLTPQRDAEPEESECADLHISPQAKPVSESKRNSP 363

Query: 370 AYCDIEADRKGEASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIEELQRNLF 429
           +    +A  KG+ S+ LA ALQEKVAALLLLSQQEERHLLERNVNSALQ K EELQRNL 
Sbjct: 364 SALSADAGVKGDPSDVLAMALQEKVAALLLLSQQEERHLLERNVNSALQGKTEELQRNLL 423

Query: 430 QV 431
           QV
Sbjct: 424 QV 425

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297831932|ref|XP_002883848.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297329688|gb|EFH60107.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 262/432 (60%), Positives = 321/432 (74%), Gaps = 7/432 (1%)

Query: 1   MDENSKEKENESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGL 60
           MD N  E EN    L ARI+QLEHER+EL+KDIEQLCMQQ GPS L VATRMHFQRTA L
Sbjct: 1   MDLNLDENEN----LKARIKQLEHERNELQKDIEQLCMQQGGPSILGVATRMHFQRTASL 56

Query: 61  EQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCM 120
           EQEIE LK K+AAC RE  NLQEEL+EAYR+K QLADLHA EV KN+EAEKQV+FFQG +
Sbjct: 57  EQEIESLKLKLAACTREKHNLQEELAEAYRVKTQLADLHAGEVAKNLEAEKQVRFFQGSV 116

Query: 121 AAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQE 180
           AAAF+ERD SVMEAEKA+E  E+MSQK  E + RLEELSS+ +  K+ N TL+ DL K E
Sbjct: 117 AAAFSERDKSVMEAEKAEENAEMMSQKLGEIEMRLEELSSDCLVQKRLNDTLQADLAKLE 176

Query: 181 ELNESFKEVINKFYEIRQQSL-EVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALED 239
           E   ++ +VI KF +IR+ SL E LE S  +KCA LL D  E W+FND STS+Y++ALE 
Sbjct: 177 EQTRTYAQVIEKFDDIRKASLCESLEMSLHNKCASLLDDPIESWTFNDPSTSEYVAALEG 236

Query: 240 ELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRV 299
           EL K +++V+NLQSKLR+GLEIENHLKK VR LEKK I +D+ I N I ++R  HSQLR 
Sbjct: 237 ELGKVKNTVDNLQSKLRVGLEIENHLKKRVRALEKKNIVADRLIVNGITDIRHHHSQLRA 296

Query: 300 HVVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFECRDVHINNDAD 359
           ++++ L E   +IKSIS  +EEK +     IR  N    Q + K DE ECRDVHI    +
Sbjct: 297 YIIDLLTEEGLYIKSISKNVEEKLKLHSSEIR--NVVPLQHDFKPDESECRDVHITTVVE 354

Query: 360 TNLVSQRNDPAYCDIEADRKGEASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQK 419
           +  V++  + +  +I A+ +G+ SE LAQALQEKV ALLLLSQQEERHL E NVN+ALQ+
Sbjct: 355 SCQVTKLAEASIANIMAESRGDTSEALAQALQEKVGALLLLSQQEERHLHEENVNAALQQ 414

Query: 420 KIEELQRNLFQV 431
           K++ELQRN+ QV
Sbjct: 415 KVDELQRNILQV 426

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15225987|ref|NP_179075.1| myosin heavy chain-related protein [Arabidopsis thaliana] gi|334184229|ref|NP_001189526.1| myosin heavy chain-related protein [Arabidopsis thaliana] gi|3810592|gb|AAC69374.1| unknown protein [Arabidopsis thaliana] gi|330251225|gb|AEC06319.1| myosin heavy chain-related protein [Arabidopsis thaliana] gi|330251227|gb|AEC06321.1| myosin heavy chain-related protein [Arabidopsis thaliana]

 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 262/433 (60%), Positives = 319/433 (73%), Gaps = 9/433 (2%)

Query: 1   MDENSKEKENESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGL 60
           MD N  E EN    L ARI+QLEHER+EL+KDIEQLCMQQ GPS L VA RMHFQRTA L
Sbjct: 1   MDLNLDENEN----LKARIKQLEHERNELQKDIEQLCMQQGGPSILGVAARMHFQRTASL 56

Query: 61  EQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCM 120
           EQEIE LK K+AAC RE  NLQEEL+EAYR+K QLADLHA EV KN+EAEKQV+FFQG +
Sbjct: 57  EQEIESLKLKLAACTREKHNLQEELAEAYRVKAQLADLHAGEVAKNLEAEKQVRFFQGSV 116

Query: 121 AAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQE 180
           AAAF+ERD SVMEAEKA+E  E+MSQK +E + RLEELSS+ +  K+ N TL+ DL K E
Sbjct: 117 AAAFSERDKSVMEAEKAEENAEMMSQKLSEIEMRLEELSSDCLVQKRLNDTLQADLAKLE 176

Query: 181 ELNESFKEVINKFYEIRQQSL-EVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALED 239
           E   ++  VI KFY+IR+ SL E LE S  +KCA LL D  E W+FND STS Y++ALE 
Sbjct: 177 EQTRTYAGVIEKFYDIRKASLCESLEMSLHEKCASLLDDPIESWTFNDPSTSDYVAALEG 236

Query: 240 ELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRV 299
           EL K +++V+NLQSKLR+GLEIENHLKK VR LEKK I +D  I N I ++R  HSQLR 
Sbjct: 237 ELGKVKNTVDNLQSKLRVGLEIENHLKKRVRALEKKNIVADGLIVNGITDIRHHHSQLRA 296

Query: 300 HVVNSLEEGRSHIKSISDVIEEKTQ-HCDDVIRGQNTGTYQRETKLDEFECRDVHINNDA 358
           +++  L E   +IKSIS  +EEK + H  +V   QN    Q + K DE ECRDVH+    
Sbjct: 297 YIIALLNEEGLYIKSISKNVEEKLKLHSSEV---QNVVPPQHDLKPDESECRDVHMTTVV 353

Query: 359 DTNLVSQRNDPAYCDIEADRKGEASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQ 418
           ++  V++  + +   I A+ +G+ASE  AQALQEKV ALLLLSQQEERHL E NVN+ALQ
Sbjct: 354 ESCQVTKLAEASIAKIMAESRGDASEAFAQALQEKVGALLLLSQQEERHLHEENVNAALQ 413

Query: 419 KKIEELQRNLFQV 431
           +K++ELQRN+ QV
Sbjct: 414 QKVDELQRNILQV 426

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238479244|ref|NP_001154517.1| myosin heavy chain-related protein [Arabidopsis thaliana] gi|330251226|gb|AEC06320.1| myosin heavy chain-related protein [Arabidopsis thaliana]

 Score =  466 bits (1198), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 262/433 (60%), Positives = 319/433 (73%), Gaps = 9/433 (2%)

Query: 1   MDENSKEKENESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGL 60
           MD N  E EN    L ARI+QLEHER+EL+KDIEQLCMQQ GPS L VA RMHFQRTA L
Sbjct: 1   MDLNLDENEN----LKARIKQLEHERNELQKDIEQLCMQQGGPSILGVAARMHFQRTASL 56

Query: 61  EQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCM 120
           EQEIE LK K+AAC RE  NLQEEL+EAYR+K QLADLHA EV KN+EAEKQV+FFQG +
Sbjct: 57  EQEIESLKLKLAACTREKHNLQEELAEAYRVKAQLADLHAGEVAKNLEAEKQVRFFQGSV 116

Query: 121 AAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQE 180
           AAAF+ERD SVMEAEKA+E  E+MSQK +E + RLEELSS+ +  K+ N TL+ DL K E
Sbjct: 117 AAAFSERDKSVMEAEKAEENAEMMSQKLSEIEMRLEELSSDCLVQKRLNDTLQADLAKLE 176

Query: 181 ELNESFKEVINKFYEIRQQSL-EVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALED 239
           E   ++  VI KFY+IR+ SL E LE S  +KCA LL D  E W+FND STS Y++ALE 
Sbjct: 177 EQTRTYAGVIEKFYDIRKASLCESLEMSLHEKCASLLDDPIESWTFNDPSTSDYVAALEG 236

Query: 240 ELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRV 299
           EL K +++V+NLQSKLR+GLEIENHLKK VR LEKK I +D  I N I ++R  HSQLR 
Sbjct: 237 ELGKVKNTVDNLQSKLRVGLEIENHLKKRVRALEKKNIVADGLIVNGITDIRHHHSQLRA 296

Query: 300 HVVNSLEEGRSHIKSISDVIEEKTQ-HCDDVIRGQNTGTYQRETKLDEFECRDVHINNDA 358
           +++  L E   +IKSIS  +EEK + H  +V   QN    Q + K DE ECRDVH+    
Sbjct: 297 YIIALLNEEGLYIKSISKNVEEKLKLHSSEV---QNVVPPQHDLKPDESECRDVHMTTVV 353

Query: 359 DTNLVSQRNDPAYCDIEADRKGEASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQ 418
           ++  V++  + +   I A+ +G+ASE  AQALQEKV ALLLLSQQEERHL E NVN+ALQ
Sbjct: 354 ESCQVTKLAEASIAKIMAESRGDASEAFAQALQEKVGALLLLSQQEERHLHEENVNAALQ 413

Query: 419 KKIEELQRNLFQV 431
           +K++ELQRN+ QV
Sbjct: 414 QKVDELQRNILQV 426

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357480651|ref|XP_003610611.1| hypothetical protein MTR_5g005010 [Medicago truncatula] gi|355511946|gb|AES93569.1| hypothetical protein MTR_5g005010 [Medicago truncatula]

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 249/432 (57%), Positives = 320/432 (74%), Gaps = 3/432 (0%)

Query: 1   MDENSKEKENESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGL 60
           M E   E  N  E+L+ RI+QLEHERDELRKDIEQLCMQQAGP+YL+VATRMHFQRTAGL
Sbjct: 1   MAEPEAEDMNHHESLLGRIRQLEHERDELRKDIEQLCMQQAGPAYLSVATRMHFQRTAGL 60

Query: 61  EQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCM 120
           EQEI+ L+ K+AA   +  NLQ++LS+AYRIK QLADLHAAE+ KN+EAEKQ+KFFQGC+
Sbjct: 61  EQEIQTLQNKLAASTTDTLNLQDQLSQAYRIKAQLADLHAAELSKNIEAEKQLKFFQGCV 120

Query: 121 AAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQE 180
           A AF+ERD++++EAEKAKE E+ MSQ+ + F  R+EEL+S   + K+ N  L+ D     
Sbjct: 121 ATAFSERDHAIIEAEKAKEMEDAMSQQIHGFLKRIEELTSVCCKQKELNYALQSDQAMYI 180

Query: 181 ELNESFKEVINKFYEIRQQSL-EVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALED 239
           E NE FK+VINKF++IRQ S  E  +TSW+ K  CLL DS E+WSFND STSKYISALE+
Sbjct: 181 EQNEKFKKVINKFFQIRQYSQKECDDTSWDVKSTCLLDDSEELWSFNDASTSKYISALEE 240

Query: 240 ELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRV 299
           +L+K  +SV+ LQSKLR+GLEIENHLKK +  +E+  I+ +K I N IA+L+  H + R 
Sbjct: 241 QLDKVNNSVDCLQSKLRVGLEIENHLKKRINLMEQNQIYMNKVIENGIADLKHHHFKYRD 300

Query: 300 HVVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFECRDVHINNDAD 359
           H++N L +G S IKS  +VI+E+ +  ++ I  +    +QR+ + +E ECRD HI+    
Sbjct: 301 HIMNLLRDGESTIKSTINVIDERIRRFNENI--EPNLVHQRDKEREENECRDAHISPQDK 358

Query: 360 TNLVSQRNDPAYCDIEADRKGEASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQK 419
           T   S+        ++AD + ++S+ LA AL EKV ALLLLSQQEERHLLERNVNSALQ 
Sbjct: 359 TLSQSKSTGLDSLAVKADGQCDSSDALAMALHEKVDALLLLSQQEERHLLERNVNSALQI 418

Query: 420 KIEELQRNLFQV 431
           K EELQRNL QV
Sbjct: 419 KTEELQRNLLQV 430

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438615|ref|XP_004137083.1| PREDICTED: uncharacterized protein LOC101211967 [Cucumis sativus]

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 255/423 (60%), Positives = 321/423 (75%), Gaps = 15/423 (3%)

Query: 11  ESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQK 70
           ++E L+ RIQQLE+ERDELRKDIEQLCMQQAGP YL+VATRMHFQRTAGLEQEIE LK+K
Sbjct: 7   DNEHLLTRIQQLEYERDELRKDIEQLCMQQAGPGYLSVATRMHFQRTAGLEQEIENLKKK 66

Query: 71  IAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNS 130
            AAC REN NLQEEL+EAYRIK QLADLH++EV KN+E+EKQ+KFFQGC+A AFAERD+S
Sbjct: 67  FAACTRENHNLQEELAEAYRIKSQLADLHSSEVAKNLESEKQLKFFQGCVATAFAERDHS 126

Query: 131 VMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVI 190
           +MEAEKAKEKEE MSQK  E + RLEELSS+ + L++ N TLR +L KQEE NE  K+VI
Sbjct: 127 IMEAEKAKEKEETMSQKLKEVENRLEELSSDCLNLRETNDTLRINLAKQEEWNEVSKQVI 186

Query: 191 NKFYEIRQQSLE-VLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVE 249
           NKFYEIRQ SLE  ++TSW++KC CLL DS+EMWSFND+ST +YI++LE+ LE  + +V+
Sbjct: 187 NKFYEIRQNSLEGFMDTSWDEKCQCLLHDSSEMWSFNDSSTFRYINSLEEGLETMKKTVD 246

Query: 250 NLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGR 309
           NLQ+KLRMG+EIE HLK  V +LE K+IH D  + + I+     +SQ R H++N LE+  
Sbjct: 247 NLQNKLRMGVEIEKHLKGKVHDLELKLIHMDDMVKSKISGFCQNYSQYRDHILNLLEKEM 306

Query: 310 SHIKSISDVIEEK-TQHCDDVIRGQNTGTYQRETKLDEFECRDVHINNDADTNLVSQRND 368
           S++ S    IEEK  Q+   V + +++    +E    E + ++ H++ +A   +      
Sbjct: 307 SNMHSTIGEIEEKIVQYGWGVQQLKDSEKVLKE----ENDSQEGHLSTNAKMEI------ 356

Query: 369 PAYCDIEADRKGEASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIEELQRNL 428
               D  AD   EA   LA ALQEKV+ALLLLSQQEERH+LER+VN+ALQ+K EELQRNL
Sbjct: 357 HGLPDSVADGNAEA---LALALQEKVSALLLLSQQEERHMLERDVNAALQRKTEELQRNL 413

Query: 429 FQV 431
            QV
Sbjct: 414 LQV 416

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449479020|ref|XP_004155483.1| PREDICTED: uncharacterized LOC101211967 [Cucumis sativus]

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 253/423 (59%), Positives = 320/423 (75%), Gaps = 15/423 (3%)

Query: 11  ESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQK 70
           ++E L+ RIQQLE+ERDELRKDIEQLCMQQAGP YL+VATRMHFQRTAGLEQEIE LK+K
Sbjct: 7   DNEHLLTRIQQLEYERDELRKDIEQLCMQQAGPGYLSVATRMHFQRTAGLEQEIENLKKK 66

Query: 71  IAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNS 130
            AAC REN NLQEEL+EAYRIK QLADLH++EV KN+E+EKQ+KFFQGC+A AFAERD+S
Sbjct: 67  FAACTRENHNLQEELAEAYRIKSQLADLHSSEVAKNLESEKQLKFFQGCVATAFAERDHS 126

Query: 131 VMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVI 190
           +MEAEKAKEKEE MSQK  E + RLEELSS+ + L++ N TLR +L KQEE NE  K+VI
Sbjct: 127 IMEAEKAKEKEETMSQKLKEVENRLEELSSDCLNLRETNDTLRINLAKQEEWNEVSKQVI 186

Query: 191 NKFYEIRQQSLE-VLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVE 249
           NKFYEIRQ SL+  ++TSW++KC CLL DS+EMWSFND+ST +YI++LE+ LE  + +V+
Sbjct: 187 NKFYEIRQNSLDGFMDTSWDEKCQCLLHDSSEMWSFNDSSTFRYINSLEEGLETMKKTVD 246

Query: 250 NLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGR 309
           NLQ+KLRMG+EIE HLK  V +LE K+IH D  + + I+     +SQ R H++N LE+  
Sbjct: 247 NLQNKLRMGVEIEKHLKGKVHDLELKLIHMDDMVKSKISGFCQNYSQYRDHILNLLEKEM 306

Query: 310 SHIKSISDVIEEK-TQHCDDVIRGQNTGTYQRETKLDEFECRDVHINNDADTNLVSQRND 368
           S++ S     EEK  Q+   V + +++    +E    E + ++ H++ +A   +      
Sbjct: 307 SNMHSTIGEFEEKIVQYGWGVQKLKDSEKVLKE----ENDSQEGHLSTNAKMEI------ 356

Query: 369 PAYCDIEADRKGEASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIEELQRNL 428
               D  AD   EA   LA ALQEKV+ALLLLSQQEERH+LER+VN+ALQ+K EELQRNL
Sbjct: 357 HGLPDSVADGNAEA---LALALQEKVSALLLLSQQEERHMLERDVNAALQRKTEELQRNL 413

Query: 429 FQV 431
            QV
Sbjct: 414 LQV 416

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	432
TAIR|locus:2064247	652	MEE13 "AT2G14680" [Arabidopsis	0.958	0.634	0.594	4.7e-119
UNIPROTKB|F1N1F8	3077	CENPF "Uncharacterized protein	0.912	0.128	0.201	2.4e-09
UNIPROTKB|P49454	3210	CENPF "Centromere protein F" [	0.905	0.121	0.215	2.4e-08
UNIPROTKB|F8W7S5	751	RRBP1 "Ribosome-binding protei	0.819	0.471	0.252	5.4e-08
UNIPROTKB|F1MYN2	1194	CGN "Uncharacterized protein"	0.888	0.321	0.218	9.9e-08
UNIPROTKB|F1NNI6	3103	LOC100858793 "Uncharacterized	0.909	0.126	0.227	1.1e-07
UNIPROTKB|Q9P2E9	1410	RRBP1 "Ribosome-binding protei	0.819	0.251	0.252	1.2e-07
UNIPROTKB|Q9P2M7	1197	CGN "Cingulin" [Homo sapiens (	0.888	0.320	0.211	1.3e-07
UNIPROTKB|F1PRS3	1869	CENPF "Uncharacterized protein	0.805	0.186	0.213	2.1e-07
UNIPROTKB|Q02224	2701	CENPE "Centromere-associated p	0.891	0.142	0.197	2.5e-07

TAIR|locus:2064247 MEE13 "AT2G14680" [Arabidopsis thaliana (taxid:3702)]

 Score = 1172 (417.6 bits), Expect = 4.7e-119, P = 4.7e-119
 Identities = 249/419 (59%), Positives = 305/419 (72%)

Query:    15 LMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAAC 74
             L ARI+QLEHER+EL+KDIEQLCMQQ GPS L VA RMHFQRTA LEQEIE LK K+AAC
Sbjct:    11 LKARIKQLEHERNELQKDIEQLCMQQGGPSILGVAARMHFQRTASLEQEIESLKLKLAAC 70

Query:    75 ARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMXX 134
              RE  NLQEEL+EAYR+K QLADLHA EV KN+EAEKQV+FFQG +AAAF+ERD SVM  
Sbjct:    71 TREKHNLQEELAEAYRVKAQLADLHAGEVAKNLEAEKQVRFFQGSVAAAFSERDKSVMEA 130

Query:   135 XXXXXXXXLMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFY 194
                     +MSQK +E + RLEELSS+ +  K+ N TL+ DL K EE   ++  VI KFY
Sbjct:   131 EKAEENAEMMSQKLSEIEMRLEELSSDCLVQKRLNDTLQADLAKLEEQTRTYAGVIEKFY 190

Query:   195 EIRQQSL-EVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQS 253
             +IR+ SL E LE S  +KCA LL D  E W+FND STS Y++ALE EL K +++V+NLQS
Sbjct:   191 DIRKASLCESLEMSLHEKCASLLDDPIESWTFNDPSTSDYVAALEGELGKVKNTVDNLQS 250

Query:   254 KLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIK 313
             KLR+GLEIENHLKK VR LEKK I +D  I N I ++R  HSQLR +++  L E   +IK
Sbjct:   251 KLRVGLEIENHLKKRVRALEKKNIVADGLIVNGITDIRHHHSQLRAYIIALLNEEGLYIK 310

Query:   314 SISDVIEEKTQ-HCDDVIRGQNTGTYQRETKLDEFECRDVHINNDADTNLVSQRNDPAYC 372
             SIS  +EEK + H  +V   QN    Q + K DE ECRDVH+    ++  V++  + +  
Sbjct:   311 SISKNVEEKLKLHSSEV---QNVVPPQHDLKPDESECRDVHMTTVVESCQVTKLAEASIA 367

Query:   373 DIEADRKGEASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIEELQRNLFQV 431
              I A+ +G+ASE  AQALQEKV ALLLLSQQEERHL E NVN+ALQ+K++ELQRN+ QV
Sbjct:   368 KIMAESRGDASEAFAQALQEKVGALLLLSQQEERHLHEENVNAALQQKVDELQRNILQV 426

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0008284 "positive regulation of cell proliferation" evidence=RCA

UNIPROTKB|F1N1F8 CENPF "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 176 (67.0 bits), Expect = 2.4e-09, P = 2.4e-09
 Identities = 88/437 (20%), Positives = 192/437 (43%)

Query:    14 ALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAA 73
             +L  ++ + EHE+  + K +E   M++   +    +T+    +   L + IE L+ +I A
Sbjct:  2037 SLQTKLSESEHEKLAITKALEAALMEKGEVAVRLSSTQEEVHQ---LRKGIEKLRVRIEA 2093

Query:    74 CARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMX 133
               ++  ++ E+L E+ R    L D      ++ +E E Q+   +        + +N    
Sbjct:  2094 DEKKQLHVSEKLKESERRNDSLQDK-----VETLERELQMA--EENQELVILDAENCKAE 2146

Query:   134 XXXXXXXXXLMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINK- 192
                      LM+++  + +  L  + SE   L KQ    +    + + L  S K ++ + 
Sbjct:  2147 VETLKTQIELMTERLKDLELDLVTIRSEKENLLKQLQEKQGQASELDTLLSSLKNLLEEK 2206

Query:   193 ------FYEIRQQSLEVLETSWEDKCA--CLLLDSAEMWSFNDTSTSKYISALEDELEKT 244
                     E  + ++E+L+T   +       L D  E W   + S    + +   E+++ 
Sbjct:  2207 EREKIQTKEEAKSAVEMLQTQLRELTEEIAALCDDQETWKVEEQS----LDSPAQEVQQL 2262

Query:   245 RSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIA----ELRLCHSQLRVH 300
             R+++E    KL++ L+I+   +  + E  K+  H   F+ + +     EL+L   + + H
Sbjct:  2263 RNNIE----KLKVHLDIDKKKQLQILEKLKESEHQADFLKDTVENLERELKLS-GENQEH 2317

Query:   301 VVNSLEEGRSHIKSISDVIEEKTQHC-----DDV-IRGQNTGTYQRETKLDEFECRDVHI 354
             V    E+ ++ ++++   +E+  Q+      D V IR +      +E + ++    ++  
Sbjct:  2318 VTLEAEKSKAEVETLKATVEKMDQNLRGLQLDLVNIRSEKEDL-TKELQKEQSRVSELET 2376

Query:   355 NNDADTNLVSQRN-DPAYCDIEADRKGEASETLAQALQEKVAALLLLSQQEERHLLERNV 413
              N +  NL+ ++  +      E+    E  +T  + L EK+AAL   + QE R + E+++
Sbjct:  2377 LNSSFENLLREKEQEKVQMKEESKAAVEMLQTQLKELNEKMAALG--NDQETRKVKEQSL 2434

Query:   414 NSALQKKIEELQRNLFQ 430
             +S +   +E  +  L Q
Sbjct:  2435 SSQVDS-LEHEKAQLLQ 2450

GO:0051310 "metaphase plate congression" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0045502 "dynein binding" evidence=IEA

GO:0045120 "pronucleus" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0030496 "midbody" evidence=IEA

GO:0016363 "nuclear matrix" evidence=IEA

GO:0016202 "regulation of striated muscle tissue development" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0010389 "regulation of G2/M transition of mitotic cell cycle" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA

GO:0000776 "kinetochore" evidence=IEA

GO:0000087 "M phase of mitotic cell cycle" evidence=IEA

GO:0000085 "G2 phase of mitotic cell cycle" evidence=IEA

UNIPROTKB|P49454 CENPF "Centromere protein F" [Homo sapiens (taxid:9606)]

 Score = 167 (63.8 bits), Expect = 2.4e-08, P = 2.4e-08
 Identities = 93/432 (21%), Positives = 188/432 (43%)

Query:    14 ALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAA 73
             +L AR+ + ++E+  + K +E   +++ G   L +++    +    L + IE L+ +I A
Sbjct:  2170 SLQARLSESDYEKLNVSKALEAALVEK-GEFALRLSSTQ--EEVHQLRRGIEKLRVRIEA 2226

Query:    74 CARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMX 133
               ++  ++ E+L E  R    L D      ++N+E E Q+   +        + +NS   
Sbjct:  2227 DEKKQLHIAEKLKERERENDSLKDK-----VENLERELQMS--EENQELVILDAENSKAE 2279

Query:   134 XXXXXXXXXLMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKF 193
                       M++    F+  L  L SE   L KQ    +  L + ++L  SFK ++   
Sbjct:  2280 VETLKTQIEEMARSLKVFELDLVTLRSEKENLTKQIQEKQGQLSELDKLLSSFKSLLE-- 2337

Query:   194 YEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTS-----KYISALEDELE---KTR 245
              E  Q  +++ E   E K A  +L + ++   N+   +     + + A E  L+   +  
Sbjct:  2338 -EKEQAEIQIKE---ESKTAVEMLQN-QLKELNEAVAALCGDQEIMKATEQSLDPPIEEE 2392

Query:   246 SSVENLQSKLRMGLEIENHLKKSV-RELEKKIIHSDKF---ISNAIAELRLCHSQLRVHV 301
               + N   KLR  LE +   +  V ++L++   H+D     + N   EL +  +  + H 
Sbjct:  2393 HQLRNSIEKLRARLEADEKKQLCVLQQLKESEHHADLLKGRVENLERELEIARTN-QEHA 2451

Query:   302 VNSLEEGRSHIKSISDVIEEKTQHCD----DV--IRGQNTGTYQRETKLDEFECRDVHIN 355
                 E  +  ++++   IE  TQ       DV  IR +       E + ++    ++ I 
Sbjct:  2452 ALEAENSKGEVETLKAKIEGMTQSLRGLELDVVTIRSEKENL-TNELQKEQERISELEII 2510

Query:   356 NDADTNLVSQRN-DPAYCDIEADRKGEASETLAQALQEKVAALLLLSQQEERHLLERNVN 414
             N +  N++ ++  +      ++    E  +T  + L E+VAAL   + QE     E+N++
Sbjct:  2511 NSSFENILQEKEQEKVQMKEKSSTAMEMLQTQLKELNERVAALH--NDQEACKAKEQNLS 2568

Query:   415 SALQ-KKIEELQ 425
             S ++  ++E+ Q
Sbjct:  2569 SQVECLELEKAQ 2580

GO:0006260 "DNA replication" evidence=IEA

GO:0007517 "muscle organ development" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0045120 "pronucleus" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0000776 "kinetochore" evidence=IDA

GO:0000922 "spindle pole" evidence=IDA

GO:0000085 "G2 phase of mitotic cell cycle" evidence=IMP

GO:0000087 "M phase of mitotic cell cycle" evidence=IMP;IDA;TAS

GO:0000775 "chromosome, centromeric region" evidence=IDA

GO:0000940 "condensed chromosome outer kinetochore" evidence=IDA;TAS

GO:0000278 "mitotic cell cycle" evidence=IMP;TAS

GO:0008022 "protein C-terminus binding" evidence=IPI

GO:0007059 "chromosome segregation" evidence=IMP;NAS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0008134 "transcription factor binding" evidence=IPI

GO:0051382 "kinetochore assembly" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0007094 "mitotic spindle assembly checkpoint" evidence=NAS

GO:0051310 "metaphase plate congression" evidence=IDA

GO:0045502 "dynein binding" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0008283 "cell proliferation" evidence=NAS

GO:0042493 "response to drug" evidence=NAS

GO:0005635 "nuclear envelope" evidence=IDA

GO:0000785 "chromatin" evidence=NAS

GO:0003682 "chromatin binding" evidence=NAS

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0016363 "nuclear matrix" evidence=IDA

GO:0015031 "protein transport" evidence=IMP;IDA

GO:0010389 "regulation of G2/M transition of mitotic cell cycle" evidence=IMP

GO:0016202 "regulation of striated muscle tissue development" evidence=ISS

GO:0005819 "spindle" evidence=IDA

GO:0030496 "midbody" evidence=IDA

GO:0000236 "mitotic prometaphase" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

UNIPROTKB|F8W7S5 RRBP1 "Ribosome-binding protein 1" [Homo sapiens (taxid:9606)]

 Score = 157 (60.3 bits), Expect = 5.4e-08, P = 5.4e-08
 Identities = 97/384 (25%), Positives = 166/384 (43%)

Query:    60 LEQEIEIL--KQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEA-EKQVKFF 116
             LE++ ++L  +Q+ AA A+  S L+E   E    K + A    A+V K + A E+++   
Sbjct:    43 LEEKEKLLATEQEDAAVAK--SKLRELNKEMAAEKAKAA-AGEAKVKKQLVAREQEITAV 99

Query:   117 QGCMAAAFAERDNSVMXXXXXXXXXXLMSQKFNEFQTRLEELSSENIELKK--QNATLRF 174
             Q  M A++ E    V           L  Q  N   T+L  L  EN  L+     AT + 
Sbjct:   100 QARMQASYREHVKEVQQLQGKIRT--LQEQLENGPNTQLARLQQENSILRDALNQATSQV 157

Query:   175 D------LEK-QEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFND 227
             +      L K ++EL++  KE++ K   +RQ   E    + E K A       ++ + + 
Sbjct:   158 ESKQNAELAKLRQELSKVSKELVEKSEAVRQD--EQQRKALEAKAAAFEKQVLQLQASHR 215

Query:   228 TSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAI 287
              S       L DE+ +     ++  + LR   E     ++ + EL  K+  S+  + +  
Sbjct:   216 ESEEALQKRL-DEVSRELCHTQSSHASLRADAEKAQEQQQQMAELHSKLQSSEAEVRSKC 274

Query:   288 AELRLCHSQLR-VHVVNSLEEGRSHIKSISDVIEE-KTQHCDDVIRGQNTGTYQRETKLD 345
              EL   H QL+     NS    R  I+SI  ++E  + +   DV   Q     Q++T+L 
Sbjct:   275 EELSGLHGQLQEARAENSQLTER--IRSIEALLEAGQARDAQDVQASQAEAD-QQQTRLK 331

Query:   346 EFECRDVHINNDA-DTNLVSQRNDPAYCDI-EADRKG-EASETLAQALQEKVAALLLLSQ 402
             E E +   +  +A +     ++      D+ E + K  EA  T  QA +EK+ +L    +
Sbjct:   332 ELESQVSGLEKEAIELREAVEQQKVKNNDLREKNWKAMEALATAEQACKEKLLSLTQAKE 391

Query:   403 QEERHL--LERNVNSALQKKIEEL 424
             + E+ L  +E     AL   + EL
Sbjct:   392 ESEKQLCLIEAQTMEALLALLPEL 415

GO:0005783 "endoplasmic reticulum" evidence=IDA

UNIPROTKB|F1MYN2 CGN "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 157 (60.3 bits), Expect = 9.9e-08, P = 9.9e-08
 Identities = 95/434 (21%), Positives = 195/434 (44%)

Query:    18 RIQQLEHERDELRKDIEQL---CMQQAGPSYLAVATRMHF--QRTAGLEQEIEILKQKIA 72
             R + LE +  +L+K ++QL   C ++A  + +A  T      QR   +E  +   +++  
Sbjct:   666 RSRGLEEQNLQLQKTLQQLRQDC-EEASKAQMAAETEAAVLGQRRTAVETTLRETQEEND 724

Query:    73 ACARENSNLQEELSEAYRIK--GQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNS 130
                R    L+++L EA  +   G++A+    + ++ +EAEKQ    Q  + AA  E + S
Sbjct:   725 EFRRRILGLEQQLKEARGLAEGGEVAEARLRDKVQRLEAEKQR--LQEALNAA-QEEEGS 781

Query:   131 VMXXXXXXXXXXLMSQKFNEFQTRL-EELSSENIELK---KQNATLR---FDLEKQEELN 183
             +             +Q+     TRL +E  + N  L+   KQ   LR    +LE+Q+ L 
Sbjct:   782 LAAAKRALEARLEEAQRG---LTRLGQEQQALNRALEEEGKQREVLRRSKAELEEQKRLL 838

Query:   184 ESFKEVINKFYEI----RQQSLEVLETSWED---KCACLLLDS---AEMWSFNDTSTSKY 233
             +   + +NK  E      +Q+L+ L+   ED   K    + D+   A+ W+     TS  
Sbjct:   839 DRTVDRLNKELEQIGDDSKQALQQLQAQLEDYKEKARREVADAQRQAKEWASEAEKTSGG 898

Query:   234 ISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLC 293
             +S L+DE ++ R +++  Q+        +  L + ++ LE++  +  +   +   +L+  
Sbjct:   899 LSRLQDETQRLRQALQASQADRDTARLDKELLVQRLQGLEQEAENKKRSQDDKSRQLKSL 958

Query:   294 HSQLRVHVVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFECRDVH 353
               ++   +   L+E +S ++ ++D +       D +     T   Q  +   + EC  + 
Sbjct:   959 EEKVS-RLEAELDEEKSTVELLTDRMNRGRDQVDQL----RTELMQERSARQDLECDKIS 1013

Query:   354 I---NNDADTNLVSQRNDPAYCDIEADRKGEASETLAQALQEKVAALLLLSQQEERHLLE 410
             +   N D  + L S          E  +K  AS +  ++ Q +     L +++ E+ +L+
Sbjct:  1014 LERQNKDLKSRLASS---------EGFQKPSASLSQLES-QNRELQERLQAEEREKTVLQ 1063

Query:   411 RNVNSALQKKIEEL 424
              + N  L+++++EL
Sbjct:  1064 -STNRKLERRVKEL 1076

GO:0043296 "apical junction complex" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

UNIPROTKB|F1NNI6 LOC100858793 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 161 (61.7 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 100/440 (22%), Positives = 197/440 (44%)

Query:    15 LMARIQQLEHERDELRKDIEQLCMQQAGPS--YLAVATRMHFQRTAGLEQEIEILKQKIA 72
             L  +IQ L  E  +LR+ +++   +        L V    + +  + L+ ++  L +K  
Sbjct:   480 LQNQIQILSSETSQLRQTMQEKENEYKSEESDILRVQLSENMEIISDLQCQLRNLSEK-- 537

Query:    73 ACARENSNLQE---EL--SEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAER 127
               A+E+S LQ+   EL  SEA ++K Q+ +L   +V  N++ E Q +           E+
Sbjct:   538 -AAQESSILQQKQLELLTSEAEQLKKQVVELEEVKV--NLQKEVQHQ------KDVIVEK 588

Query:   128 DNSVMXXXXXXXXXXLMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFK 187
             D S+            + +   E     EE  +   +L+ Q   L  +L+K +EL +  K
Sbjct:   589 DQSLSESESSFIENKTLLKALKEKAQEDEEKVNLISQLQSQVHVLTQELQKSKELVQE-K 647

Query:   188 EVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSS 247
             E  N F  + Q+ +E  +     +    L  + ++ + N +  S  I  L++ELEK+ ++
Sbjct:   648 E--NAFLSL-QEKIEA-QYELRTELTAALNKNLQLANKNMSVLSNEIEILKEELEKSGAA 703

Query:   248 VENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEE 307
             ++NL  + ++ L+ E+ L++S+ E E K +     +  A  E++    QL   + N ++ 
Sbjct:   704 MKNLTKEFQLELKFES-LEQSLLESENKWVTK---LDRATLEIKNLTEQLSC-LENEMKS 758

Query:   308 GRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEF---ECRDVHINNDADTNLVS 364
               S I+S+   ++       D    Q      +  KL+E        +H++     +L+ 
Sbjct:   759 KDSKIQSLQKELDHFQLQLTDEKNRQIQFLQDKINKLEEIVRTSQEKLHVDGKKVASLLE 818

Query:   365 Q--RNDPAYCDI--EADRKGEASETLAQALQEK---VAALL------LLSQQEERHLLE- 410
             +  R D    D+  + +++ +    L+Q ++EK   V  ++      +L+  EER+ L  
Sbjct:   819 EMGRKDQLIEDLTSQLNQQKDLISGLSQQMKEKDCFVTQIMESLSSEMLNFSEERNTLSS 878

Query:   411 --RNVNSALQKKIEELQRNL 428
                ++ SA    + EL R L
Sbjct:   879 KLHDLESAHNHSVGELNRVL 898

GO:0005794 "Golgi apparatus" evidence=IEA

UNIPROTKB|Q9P2E9 RRBP1 "Ribosome-binding protein 1" [Homo sapiens (taxid:9606)]

 Score = 157 (60.3 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 97/384 (25%), Positives = 166/384 (43%)

Query:    60 LEQEIEIL--KQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEA-EKQVKFF 116
             LE++ ++L  +Q+ AA A+  S L+E   E    K + A    A+V K + A E+++   
Sbjct:   702 LEEKEKLLATEQEDAAVAK--SKLRELNKEMAAEKAKAA-AGEAKVKKQLVAREQEITAV 758

Query:   117 QGCMAAAFAERDNSVMXXXXXXXXXXLMSQKFNEFQTRLEELSSENIELKK--QNATLRF 174
             Q  M A++ E    V           L  Q  N   T+L  L  EN  L+     AT + 
Sbjct:   759 QARMQASYREHVKEVQQLQGKIRT--LQEQLENGPNTQLARLQQENSILRDALNQATSQV 816

Query:   175 D------LEK-QEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFND 227
             +      L K ++EL++  KE++ K   +RQ   E    + E K A       ++ + + 
Sbjct:   817 ESKQNAELAKLRQELSKVSKELVEKSEAVRQD--EQQRKALEAKAAAFEKQVLQLQASHR 874

Query:   228 TSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAI 287
              S       L DE+ +     ++  + LR   E     ++ + EL  K+  S+  + +  
Sbjct:   875 ESEEALQKRL-DEVSRELCHTQSSHASLRADAEKAQEQQQQMAELHSKLQSSEAEVRSKC 933

Query:   288 AELRLCHSQLR-VHVVNSLEEGRSHIKSISDVIEE-KTQHCDDVIRGQNTGTYQRETKLD 345
              EL   H QL+     NS    R  I+SI  ++E  + +   DV   Q     Q++T+L 
Sbjct:   934 EELSGLHGQLQEARAENSQLTER--IRSIEALLEAGQARDAQDVQASQAEAD-QQQTRLK 990

Query:   346 EFECRDVHINNDA-DTNLVSQRNDPAYCDI-EADRKG-EASETLAQALQEKVAALLLLSQ 402
             E E +   +  +A +     ++      D+ E + K  EA  T  QA +EK+ +L    +
Sbjct:   991 ELESQVSGLEKEAIELREAVEQQKVKNNDLREKNWKAMEALATAEQACKEKLLSLTQAKE 1050

Query:   403 QEERHL--LERNVNSALQKKIEEL 424
             + E+ L  +E     AL   + EL
Sbjct:  1051 ESEKQLCLIEAQTMEALLALLPEL 1074

GO:0015031 "protein transport" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=NAS

GO:0007165 "signal transduction" evidence=NAS

GO:0004872 "receptor activity" evidence=TAS

GO:0005840 "ribosome" evidence=TAS

GO:0006412 "translation" evidence=TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

UNIPROTKB|Q9P2M7 CGN "Cingulin" [Homo sapiens (taxid:9606)]

 Score = 156 (60.0 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 92/434 (21%), Positives = 191/434 (44%)

Query:    18 RIQQLEHERDELRKDIEQL---CMQQAGPSYLAVATRMHF-QRTAGLEQEIEILKQKIAA 73
             R ++LE +  +L+K ++QL   C + +    +A A      QR A +E  +   +++   
Sbjct:   669 RGRELEEQNLQLQKTLQQLRQDCEEASKAKMVAEAEATVLGQRRAAVETTLRETQEENDE 728

Query:    74 CARENSNLQEELSEAYRIK--GQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSV 131
               R    L+++L E   +   G+  +    + ++ +EAEKQ    +  + A+  E + S+
Sbjct:   729 FRRRILGLEQQLKETRGLVDGGEAVEARLRDKLQRLEAEKQQ--LEEALNAS-QEEEGSL 785

Query:   132 MXXXXXXXXXXLMSQK-FNEFQTRLEELSSENIELKKQNATLR---FDLEKQEELNESFK 187
                          +Q+         + L+    E  KQ   LR    +LE+Q+ L +   
Sbjct:   786 AAAKRALEARLEEAQRGLARLGQEQQTLNRALEEEGKQREVLRRGKAELEEQKRLLDRTV 845

Query:   188 EVINK----FYEIRQQSLEVLETSWED---KCACLLLDS---AEMWSFNDTSTSKYISAL 237
             + +NK      E  +Q+L+ L+   ED   K    + D+   A+ W+     TS  +S L
Sbjct:   846 DRLNKELEKIGEDSKQALQQLQAQLEDYKEKARREVADAQRQAKDWASEAEKTSGGLSRL 905

Query:   238 EDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQL 297
             +DE+++ R +++  Q++       +  L + ++ LE++  +  +   +   +L+    ++
Sbjct:   906 QDEIQRLRQALQASQAERDTARLDKELLAQRLQGLEQEAENKKRSQDDRARQLKGLEEKV 965

Query:   298 RVHVVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFECRDVHI--- 354
                +   L+E ++ ++ ++D +       D +     T   Q  +   + EC  + +   
Sbjct:   966 S-RLETELDEEKNTVELLTDRVNRGRDQVDQL----RTELMQERSARQDLECDKISLERQ 1020

Query:   355 NNDADTNLVSQRNDPAYCDIEADRKGEAS----ETLAQALQEKVAALLLLSQQEERHLLE 410
             N D  T L S          E  +K  AS    E+  Q LQE++ A     ++ E+ +L+
Sbjct:  1021 NKDLKTRLASS---------EGFQKPSASLSQLESQNQLLQERLQA-----EEREKTVLQ 1066

Query:   411 RNVNSALQKKIEEL 424
              + N  L++K++EL
Sbjct:  1067 -STNRKLERKVKEL 1079

GO:0003774 "motor activity" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

GO:0005923 "tight junction" evidence=IDA;NAS

GO:0005515 "protein binding" evidence=IPI

GO:0003779 "actin binding" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0007179 "transforming growth factor beta receptor signaling pathway" evidence=TAS

GO:0030054 "cell junction" evidence=TAS

UNIPROTKB|F1PRS3 CENPF "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 156 (60.0 bits), Expect = 2.1e-07, P = 2.1e-07
 Identities = 81/379 (21%), Positives = 175/379 (46%)

Query:    61 EQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEV---IKNMEAEKQVKFFQ 117
             ++ I  L+++++    E + L  +L    + K +L DL + ++   I+ +E+ +      
Sbjct:   702 QKAITCLEEELSVVTSERNQLHGQLDTLSKEKKEL-DLMSEKMKQKIQELESREDECLHP 760

Query:   118 GCMAAAFAERDNSVMXXXXXXXXXXLMSQKFNEFQTRLEELSSENIELKKQNATL-RFDL 176
               MA A   +D   +          L+     E  TRL+E   +++E   Q  +L + +L
Sbjct:   761 SDMAGAEV-KDKMQLVQRLSSDVTQLL-----EDNTRLQE-QLQSLEKDSQALSLVKSEL 813

Query:   177 EKQ-EELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYIS 235
             E Q E+LN+  KE +++  E  Q  L   E+  E       L+ A M        +  +S
Sbjct:   814 EIQIEQLNKE-KESLSRESESLQARLH--ESEHEKLTVAKALEGALM---EKGEVAVRLS 867

Query:   236 ALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHS 295
             + ++E+ + R  +E L+ ++    + + H+ + +RE E+K       I N   EL++   
Sbjct:   868 STQEEVHQLRKGIEKLRIRIEADEKKQLHVLEKLRESERKADALQDKIENLERELQMSEE 927

Query:   296 QLRVHVVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFECRDVHIN 355
                + ++++ E  ++ ++++   +E  T+   D+     T  +++E  + + + +   ++
Sbjct:   928 NQELVILDA-ENSKAEVETLKTQMELTTKSLKDLESDLVTVRFEKENLIKQLQDKQGQVS 986

Query:   356 NDADTNLVS---QRNDPAYCDIEADRKGEAS----ETLAQALQEKVAALLLLSQQEERHL 408
              + DT L S   Q  +     IE   +  A+     T  + L E++AAL     QE + +
Sbjct:   987 -ELDTLLSSFKGQLEEKEREKIEMKEESRAALEMLRTQLKELNEEIAALC--HDQEIQKV 1043

Query:   409 LERNVNSALQKKIEELQRN 427
              E++++  +Q+ I +L+ N
Sbjct:  1044 KEQSLDPLVQE-IHQLRNN 1061

GO:0045502 "dynein binding" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

UNIPROTKB|Q02224 CENPE "Centromere-associated protein E" [Homo sapiens (taxid:9606)]

 Score = 157 (60.3 bits), Expect = 2.5e-07, P = 2.5e-07
 Identities = 86/436 (19%), Positives = 199/436 (45%)

Query:    20 QQLEHERDELR---KDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACAR 76
             +  E ERD LR   ++IE   +Q      L +A  +H +     ++ I+ L++ ++    
Sbjct:  1210 KSFETERDHLRGYIREIEATGLQTK--EELKIA-HIHLKEH---QETIDELRRSVSEKTA 1263

Query:    77 ENSNLQEELSEAYRIKGQLADLHAA-EVIKNME--AEKQVKFFQ-GCMAAAFAERDNSVM 132
             +  N Q+      +++ ++  LH   E++ N++  +E Q    +   +      +D++ +
Sbjct:  1264 QIINTQDLEKSHTKLQEEIPVLHEEQELLPNVKEVSETQETMNELELLTEQSTTKDSTTL 1323

Query:   133 XXXXXXXXXXLMSQKFNEFQTRLEELSSENIELKKQNATLRFDLE-KQEELNESFKEVIN 191
                        +++KF E Q  ++ L+ E   LK    T++  LE K ++L E  +E + 
Sbjct:  1324 ARIEMERLR--LNEKFQESQEEIKSLTKERDNLK----TIKEALEVKHDQLKEHIRETLA 1377

Query:   192 KFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTST----------SKYISALEDEL 241
             K  E + +  + L    +D     ++   E +   D++           SK +    DE+
Sbjct:  1378 KIQESQSKQEQSLNMKEKDNETTKIVSEMEQFKPKDSALLRIEIEMLGLSKRLQESHDEM 1437

Query:   242 EKTRSSVENLQSKLRMGLEIEN-HLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVH 300
             +      ++LQ +L+  L+ E+  LK++++E+  K + +++       EL++ H  L+  
Sbjct:  1438 KSVAKEKDDLQ-RLQEVLQSESDQLKENIKEIVAKHLETEE-------ELKVAHCCLKEQ 1489

Query:   301 --VVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFECRDVH--INN 356
                +N L    S  ++    I+++ +  +D ++ +    Y++E + +  +  +V   +N 
Sbjct:  1490 EETINELRVNLSEKETEISTIQKQLEAINDKLQNKIQEIYEKEEQFNIKQISEVQEKVNE 1549

Query:   357 DADTNLVSQRNDPAYCDIEADRKGEASETLAQALQEKVAALLLLSQQEERHLLERNVNSA 416
                     +  D A   IE+ +  E +  L ++ QE++   +++ ++EE     + V  A
Sbjct:  1550 LKQFKEHRKAKDSALQSIES-KMLELTNRLQES-QEEIQ--IMIKEKEEM----KRVQEA 1601

Query:   417 LQKKIEELQRNLFQVI 432
             LQ + ++L+ N  +++
Sbjct:  1602 LQIERDQLKENTKEIV 1617

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0000778 "condensed nuclear chromosome kinetochore" evidence=IEA

GO:0005819 "spindle" evidence=IEA

GO:0000940 "condensed chromosome outer kinetochore" evidence=TAS

GO:0000776 "kinetochore" evidence=IDA

GO:0045860 "positive regulation of protein kinase activity" evidence=IMP

GO:0000779 "condensed chromosome, centromeric region" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0051382 "kinetochore assembly" evidence=NAS

GO:0003777 "microtubule motor activity" evidence=IMP

GO:0005874 "microtubule" evidence=IDA

GO:0043515 "kinetochore binding" evidence=IDA

GO:0005634 "nucleus" evidence=IMP

GO:0000775 "chromosome, centromeric region" evidence=IDA

GO:0007080 "mitotic metaphase plate congression" evidence=TAS

GO:0000089 "mitotic metaphase" evidence=TAS

GO:0007079 "mitotic chromosome movement towards spindle pole" evidence=TAS

GO:0000087 "M phase of mitotic cell cycle" evidence=TAS

GO:0000236 "mitotic prometaphase" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007018 "microtubule-based movement" evidence=TAS

GO:0007596 "blood coagulation" evidence=TAS

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0015630 "microtubule cytoskeleton" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00001484001 SubName- Full=Chromosome chr3 scaffold_117, whole genome shotgun sequence; (658 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	432
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	6e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.001
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.004

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 45.5 bits (108), Expect = 5e-05
 Identities = 51/206 (24%), Positives = 93/206 (45%), Gaps = 7/206 (3%)

Query: 2   DENSKEKENESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMH--FQRTAG 59
                  E E E L +R+++LE E +EL +++E+L  +        +   +    +  A 
Sbjct: 722 KRELAALEEELEQLQSRLEELEEELEELEEELEELQERLE-----ELEEELESLEEALAK 776

Query: 60  LEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGC 119
           L++EIE L++K  A   E   L+EEL EA R    L     +   +    E++++  +  
Sbjct: 777 LKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEE 836

Query: 120 MAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQ 179
           +     + D    E E+ +++ E + ++  E +   EEL  E  EL+++   L  +L + 
Sbjct: 837 IEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELREL 896

Query: 180 EELNESFKEVINKFYEIRQQSLEVLE 205
           E      KE I K  E  ++    LE
Sbjct: 897 ESELAELKEEIEKLRERLEELEAKLE 922

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 42.0 bits (99), Expect = 6e-04
 Identities = 56/277 (20%), Positives = 115/277 (41%), Gaps = 10/277 (3%)

Query: 4   NSKEKENESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQE 63
             +E E + E L  +I +LE    ELRK++E+L   +     L        ++ + L ++
Sbjct: 678 EIEELEEKIEELEEKIAELEKALAELRKELEEL---EEELEQLRKELEELSRQISALRKD 734

Query: 64  IEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAA 123
           +  L+ ++       + L +EL+E      +L +       +  EAE +++  +  +   
Sbjct: 735 LARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQL 794

Query: 124 FAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELN 183
             E        ++ + +  L++++    + RLE L       +++   L   +E+  E  
Sbjct: 795 KEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDI 854

Query: 184 ESFKEVINKFYEIR---QQSLEVLETSWEDKCACLLLDSAEMWSFNDT--STSKYISALE 238
           ES    I +  E+    +  LE L          L L  +E+   ++         S L 
Sbjct: 855 ESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELR 914

Query: 239 DELEKTRSSVENLQSKLRMGLEIE-NHLKKSVRELEK 274
            ELE+ R  +  L+ +L  GLE+  ++L++ + E   
Sbjct: 915 RELEELREKLAQLELRLE-GLEVRIDNLQERLSEEYS 950

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 36/178 (20%), Positives = 74/178 (41%), Gaps = 20/178 (11%)

Query: 1   MDENSKEKENESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGL 60
           ++   +E+    + L     +L+ E ++LR ++E+          +              
Sbjct: 341 LEREIEEERKRRDKLTEEYAELKEELEDLRAELEE----------VDKEFAETRDELKDY 390

Query: 61  EQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAA-----EVIKNMEAEKQVKF 115
            +++E LK++I    RE   LQEEL    R+  +LADL+AA       I  +E EK+ K 
Sbjct: 391 REKLEKLKREINELKRELDRLQEELQ---RLSEELADLNAAIAGIEAKINELEEEKEDK- 446

Query: 116 FQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLR 173
               +     + +    +  K +++   + ++++  +  L +L  E  E + Q     
Sbjct: 447 -ALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASE 503

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 39.3 bits (92), Expect = 0.004
 Identities = 62/289 (21%), Positives = 117/289 (40%), Gaps = 52/289 (17%)

Query: 3   ENSKEKENESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQ 62
           E  +E + E E     I++L+ E +ELR+++E+L  +                    LE 
Sbjct: 253 EELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEI----------EELEG 302

Query: 63  EIEILKQKIAACARENSNLQEELSEAY-RIKGQLADLHAAEVIKNMEAEKQVKFFQGCMA 121
           EI +L++++     E   L+E L E   +I+    +L   E +   E E+ +        
Sbjct: 303 EISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLL-EELEQLLA------- 354

Query: 122 AAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEE 181
                        E  +E EE +S    E +   E L  E  EL+ + A +R +LE+ + 
Sbjct: 355 ----------ELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKR 404

Query: 182 LNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDEL 241
             ES +E + +  E  +   E L+    +                       +  L+ EL
Sbjct: 405 EIESLEERLERLSERLEDLKEELKELEAE-----------------------LEELQTEL 441

Query: 242 EKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAEL 290
           E+    +E L+ +L    +    L++ + EL++++   +K +S+  A L
Sbjct: 442 EELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARL 490

Length = 1163

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	432
PRK09039	343	hypothetical protein; Validated	97.49
PF00038	312	Filament: Intermediate filament protein; InterPro:	97.05
PHA02562	562	46 endonuclease subunit; Provisional	96.58
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	96.45
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	95.91
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	95.88
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	95.2
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	95.11
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	95.05
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	94.84
PRK02224	880	chromosome segregation protein; Provisional	94.06
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	93.81
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	93.58
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	93.33
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	92.98
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	92.87
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	92.63
PRK02224	880	chromosome segregation protein; Provisional	92.48
PRK10884	206	SH3 domain-containing protein; Provisional	92.47
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	92.16
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	92.08
PRK09039	343	hypothetical protein; Validated	92.0
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	91.4
PRK03918	880	chromosome segregation protein; Provisional	91.16
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	90.98
PRK04863	1486	mukB cell division protein MukB; Provisional	90.73
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	90.71
PRK11637	428	AmiB activator; Provisional	88.34
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	87.51
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	86.55
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	86.29
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	85.05
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	84.91
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	84.71
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	84.4
PRK03918	880	chromosome segregation protein; Provisional	84.13
PF08232	134	Striatin: Striatin family; InterPro: IPR013258 Thi	83.93
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	83.0
PRK11637	428	AmiB activator; Provisional	80.36
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	80.12
PHA02562	562	46 endonuclease subunit; Provisional	80.02

>PRK09039 hypothetical protein; Validated

Probab=97.49  E-value=0.022  Score=56.23  Aligned_cols=114  Identities=21%  Similarity=0.230  Sum_probs=64.8

Q ss_pred             CchHHHhhHH-----------------HHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHh
Q 013998           43 PSYLAVATRM-----------------HFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIK  105 (432)
Q Consensus        43 pgyl~vATRM-----------------~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadLh~ae~~K  105 (432)
                      ||||++-|-+                 +++-..++++++..|..+++.                     |+++-+-+.+.
T Consensus        17 pg~vd~~~~ll~~~~f~l~~f~~~q~fLs~~i~~~~~eL~~L~~qIa~---------------------L~e~L~le~~~   75 (343)
T PRK09039         17 PGFVDALSTLLLVIMFLLTVFVVAQFFLSREISGKDSALDRLNSQIAE---------------------LADLLSLERQG   75 (343)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH---------------------HHHHHHHHHHH
Confidence            9999877654                 456777777777777777655                     55555555555


Q ss_pred             hHHHHHHHHHhhhhHHHHHhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHHHhhH
Q 013998          106 NMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE  184 (432)
Q Consensus       106 N~e~EkqVkFfQs~VA~AFAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~e  184 (432)
                      +..++..+.=.+.....|-++|+.  .|  ..-.   .......+.+.|+..++..+..+|......+.+...+..|.+
T Consensus        76 ~~~l~~~l~~l~~~l~~a~~~r~~--Le--~~~~---~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~  147 (343)
T PRK09039         76 NQDLQDSVANLRASLSAAEAERSR--LQ--ALLA---ELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIA  147 (343)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHH--HH--HHHh---hhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            555555555555555544444431  11  1000   001122355566666666666666666656666666665555

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=97.05  E-value=0.28  Score=45.97  Aligned_cols=117  Identities=17%  Similarity=0.238  Sum_probs=88.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHH
Q 013998           12 SEALMARIQQLEHERDELRKDIEQLCMQQAG-PSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYR   90 (432)
Q Consensus        12 ~esl~aRI~qLEhERDELrKDIEqLCMQQaG-pgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYR   90 (432)
                      -++.+.||..||.+...|..+|..+---.+. |+-+          -...+.+|..|+.++..++.++-.|+-++..+..
T Consensus        13 la~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~----------~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~   82 (312)
T PF00038_consen   13 LASYIEKVRFLEQENKRLESEIEELREKKGEEVSRI----------KEMYEEELRELRRQIDDLSKEKARLELEIDNLKE   82 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH---------HHH----------HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCccc----------ccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHH
Confidence            4677889999999999999999999876422 2211          2456888999999999999999999999998887


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHHHhH
Q 013998           91 IKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAK  138 (432)
Q Consensus        91 iK~qLadLh~ae~~KN~e~EkqVkFfQs~VA~AFAERD~slmEaEKaK  138 (432)
                      --..+-.-|..+......+|.++.=+..-+-.+.+.|...=-+++-.+
T Consensus        83 e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~  130 (312)
T PF00038_consen   83 ELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLK  130 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHH
Confidence            777776778888999999999998888888777777766555555554

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PHA02562 46 endonuclease subunit; Provisional

Probab=96.58  E-value=0.96  Score=45.35  Aligned_cols=75  Identities=15%  Similarity=0.158  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcC-CchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHH
Q 013998           15 LMARIQQLEHERDELRKDIEQLCMQQAG-PSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAY   89 (432)
Q Consensus        15 l~aRI~qLEhERDELrKDIEqLCMQQaG-pgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAY   89 (432)
                      +..++.+++.+-+.|+..|+.+=-+-++ +.++.....-....++.++.+++.+..+....-.+-.+|++++.+.+
T Consensus       172 ~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~  247 (562)
T PHA02562        172 NKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLV  247 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4556666666666666666666444443 45555555555667777887788887777777777777777777664

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=96.45  E-value=1.6  Score=46.33  Aligned_cols=17  Identities=6%  Similarity=0.126  Sum_probs=7.6

Q ss_pred             hHHHHHHHHHHHHhhHH
Q 013998          233 YISALEDELEKTRSSVE  249 (432)
Q Consensus       233 yisaLEee~e~lr~si~  249 (432)
                      .|..|+.+++.+.+.|+
T Consensus       966 ~~~~l~~~i~~lg~aie  982 (1179)
T TIGR02168       966 DEEEARRRLKRLENKIK  982 (1179)
T ss_pred             CHHHHHHHHHHHHHHHH
Confidence            34444444444444333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=95.91  E-value=0.37  Score=53.14  Aligned_cols=115  Identities=27%  Similarity=0.400  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHH---HhhhhhHH----HHHHHHHHH-------HHhhhhhcch
Q 013998           16 MARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHF---QRTAGLEQ----EIEILKQKI-------AACARENSNL   81 (432)
Q Consensus        16 ~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~---QRtA~LEQ----eIE~Lkkkl-------~~c~rEn~nL   81 (432)
                      .+++..++.|.|-|++++|.. +.-.|+.--++-| .|+   -|..++..    ++..++.++       ...-.+-++|
T Consensus         2 q~ql~~~q~E~e~L~~ele~~-~~~l~~~~~~i~~-fwspElkrer~~rkee~a~l~~~k~qlr~~q~e~q~~~~ei~~L   79 (775)
T PF10174_consen    2 QAQLERLQRENERLRRELERK-QSKLGSSMNSIKT-FWSPELKRERALRKEEAAELSRLKEQLRVTQEENQKAQEEIQAL   79 (775)
T ss_pred             ccHHHHHHHHHHHHHHHHHHH-HhHHHHHHHhHhc-ccchhhHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHH
Confidence            468889999999999999987 4444444444333 222   22233322    233444444       4444455677


Q ss_pred             HHHHHHH----HHHHHHHHHHHH-HHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHHHhHH
Q 013998           82 QEELSEA----YRIKGQLADLHA-AEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKE  139 (432)
Q Consensus        82 QEELsEA----YRiK~qLadLh~-ae~~KN~e~EkqVkFfQs~VA~AFAERD~slmEaEKaKE  139 (432)
                      |+|| .+    ||+..++-.-.+ .+-...  +++    -+|-+.+..||||....|.+....
T Consensus        80 qeEL-r~q~e~~rL~~~~e~~~~e~e~l~~--ld~----~~~q~~rl~~E~er~~~El~~lr~  135 (775)
T PF10174_consen   80 QEEL-RAQRELNRLQQELEKAQYEFESLQE--LDK----AQEQFERLQAERERLQRELERLRK  135 (775)
T ss_pred             HHHH-HHhhHHHHHHHHhhhcccccchhhh--hhh----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888 55    555555443311 111111  222    367788889999999999888773

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=95.88  E-value=3.2  Score=44.53  Aligned_cols=30  Identities=17%  Similarity=0.335  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHhhHHHHhh-hhhhhHHHHH
Q 013998          234 ISALEDELEKTRSSVENLQS-KLRMGLEIEN  263 (432)
Q Consensus       234 isaLEee~e~lr~si~~LQs-kLR~glEIEn  263 (432)
                      +..++.++..+++.++++-+ |+..--+++.
T Consensus       953 ~~~l~~~l~~l~~~i~~l~~vN~~Ai~~~~~  983 (1164)
T TIGR02169       953 LEDVQAELQRVEEEIRALEPVNMLAIQEYEE  983 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence            45788888888888887765 4443344443

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR00606 rad50 rad50

Probab=95.20  E-value=7.7  Score=44.43  Aligned_cols=290  Identities=12%  Similarity=0.080  Sum_probs=127.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH---HHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHH--
Q 013998           16 MARIQQLEHERDELRKDIEQL---CMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYR--   90 (432)
Q Consensus        16 ~aRI~qLEhERDELrKDIEqL---CMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYR--   90 (432)
                      .+.+..+..+++.+.+.|..|   .+.- |.-=+.++.++-  +-..|+-+|+.|+..+..+..+-..+.+++...-.  
T Consensus       842 ~~~~e~l~~e~e~~~~eI~~Lq~ki~el-~~~klkl~~~l~--~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~  918 (1311)
T TIGR00606       842 VSKIELNRKLIQDQQEQIQHLKSKTNEL-KSEKLQIGTNLQ--RRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFL  918 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence            333444455555556666666   5542 222233333222  44556666666666666665555555555443322  


Q ss_pred             --HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHH---------HHHhhhhhh--hHHHHH----hHHHHHHHHHHHHHHHH
Q 013998           91 --IKGQLADLHAAEVIKNMEAEKQVKFFQGCMA---------AAFAERDNS--VMEAEK----AKEKEELMSQKFNEFQT  153 (432)
Q Consensus        91 --iK~qLadLh~ae~~KN~e~EkqVkFfQs~VA---------~AFAERD~s--lmEaEK----aKE~Ee~m~qk~~e~e~  153 (432)
                        ..+.+.++....-.+..++...+.=|+..+-         ..|..+|..  |-+++.    ....-+.+-+....+..
T Consensus       919 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~~~~~qL~~~e~el~~~~~~ie~le~e~~~l~~  998 (1311)
T TIGR00606       919 EKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINE  998 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              2233333333333344445555554444432         223333321  111111    11111233344455555


Q ss_pred             HHHHHhHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccchhhhhcccccccccccCcchhhh
Q 013998          154 RLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKY  233 (432)
Q Consensus       154 R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~~~~s~~~Kc~~Ll~ds~~~WSfn~tStsky  233 (432)
                      .+..+...+.++......++..+..+..+++.. .     -.....+++.....- +. .-+-.+ ...|.=--.+.+.=
T Consensus       999 ~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~-e-----l~~eI~~l~~~~~~~-~~-~~~~~e-~~~l~~~~~~l~~~ 1069 (1311)
T TIGR00606       999 DMRLMRQDIDTQKIQERWLQDNLTLRKRENELK-E-----VEEELKQHLKEMGQM-QV-LQMKQE-HQKLEENIDLIKRN 1069 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-----HHHHHHHHHHHHhhc-cH-HHHHHH-HHHHHHHHHHHHHH
Confidence            555555555555555555555555553222210 0     001111111100000 00 000000 00011001112222


Q ss_pred             HHHHHHHHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhh
Q 013998          234 ISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIK  313 (432)
Q Consensus       234 isaLEee~e~lr~si~~LQskLR~glEIEnHLkk~~r~lEkkq~~~d~~i~Ngis~L~~~h~~~R~~Im~lL~e~~s~ik  313 (432)
                      .+++.+++..+.+.|..|+..|.=      =--+++..=-++..+==+....++.+|.+||...=.-||+.=..-=-.|-
T Consensus      1070 ~a~l~g~~k~le~qi~~l~~eL~e------~~yk~a~~ryrka~i~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~n 1143 (1311)
T TIGR00606      1070 HVLALGRQKGYEKEIKHFKKELRE------PQFRDAEEKYREMMIVMRTTELVNKDLDIYYKTLDQAIMKFHSMKMEEIN 1143 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555555555554421      11233333333444444556778888888888877777776555555566


Q ss_pred             hhHHHHHhhh
Q 013998          314 SISDVIEEKT  323 (432)
Q Consensus       314 s~~~~i~ek~  323 (432)
                      .||+.+=.++
T Consensus      1144 ~~~~~~w~~~ 1153 (1311)
T TIGR00606      1144 KIIRDLWRST 1153 (1311)
T ss_pred             HHHHHHHHHH
Confidence            6666665555

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=95.11  E-value=7.7  Score=43.93  Aligned_cols=70  Identities=17%  Similarity=0.271  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHhhHHHHhh-hhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013998          236 ALEDELEKTRSSVENLQS-KLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLE  306 (432)
Q Consensus       236 aLEee~e~lr~si~~LQs-kLR~glEIEnHLkk~~r~lEkkq~~~d~~i~Ngis~L~~~h~~~R~~Im~lL~  306 (432)
                      .++.+++.+...+..|-. |++ .+|-=..++++...|..+..-.++=...=...+..+...-|...|....
T Consensus       946 ~~~~~i~~le~~i~~lg~VN~~-Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~~~~f~~~f~ 1016 (1163)
T COG1196         946 ELEREIERLEEEIEALGPVNLR-AIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFKETFD 1016 (1163)
T ss_pred             HHHHHHHHHHHHHHhccCCChh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555555555444422 222 2333334555555555554444444333333333444444444444333

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=95.05  E-value=12  Score=45.73  Aligned_cols=182  Identities=22%  Similarity=0.261  Sum_probs=113.4

Q ss_pred             hhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHH-HH
Q 013998           57 TAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVME-AE  135 (432)
Q Consensus        57 tA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqVkFfQs~VA~AFAERD~slmE-aE  135 (432)
                      -.+|+.+|+.++.++..-+|.+++|...+..+-+=+..|-+.+--+...-.++++++.=--+-++++-+.=+..+.. .|
T Consensus      1296 ~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~~~e 1375 (1930)
T KOG0161|consen 1296 KQALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQRLE 1375 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34677889999999999999999999998888777777776666666666677777665555555554444444443 34


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccchh---
Q 013998          136 KAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKC---  212 (432)
Q Consensus       136 KaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~~~~s~~~Kc---  212 (432)
                      .+.|.-...-..+.+.+++++.+...+..+.+....||.++..+.--.+....++. |.+..+...+-.=..|..+|   
T Consensus      1376 elee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~-~le~k~k~f~k~l~e~k~~~e~l 1454 (1930)
T KOG0161|consen 1376 ELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVA-ALEKKQKRFEKLLAEWKKKLEKL 1454 (1930)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444455567888899999999999998888877777776655443332221111 22222222222113444444   


Q ss_pred             hhhcccccccccccCcchhhhHHHHHH
Q 013998          213 ACLLLDSAEMWSFNDTSTSKYISALED  239 (432)
Q Consensus       213 ~~Ll~ds~~~WSfn~tStskyisaLEe  239 (432)
                      +..++.....|.=-+|+.-++--+||+
T Consensus      1455 ~~Eld~aq~e~r~~~tel~kl~~~lee 1481 (1930)
T KOG0161|consen 1455 QAELDAAQRELRQLSTELQKLKNALEE 1481 (1930)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            455566666666556655555444444

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=94.84  E-value=8.3  Score=42.99  Aligned_cols=178  Identities=21%  Similarity=0.262  Sum_probs=110.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHH--hhcCCc-hHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHH
Q 013998           11 ESEALMARIQQLEHERDELRKDIEQLCM--QQAGPS-YLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSE   87 (432)
Q Consensus        11 ~~esl~aRI~qLEhERDELrKDIEqLCM--QQaGpg-yl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsE   87 (432)
                      ..+.+..||.-++.++|...-.|+.|=-  |..||+ +-...+.-...|.++++..+..|+..+.---.++.-+.++|-.
T Consensus       136 ~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~~~~~~~~~~~~~~~~~e~~~~~le~lle~~e~~~~~~r~~l~~  215 (775)
T PF10174_consen  136 TLEELQLRIETQQQTLDKADEEIEKLQEMLQSKGLSAEAEEEDNEALRRIREAEARIMRLESLLERKEKEHMEAREQLHR  215 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence            4677888899999999999999988754  778844 5566666677799999999988888887777777666666665


Q ss_pred             HHHHHHH------HHHHHH------HHHHhhH-HHHHHHHHhhhhHHHHHhhhhhhhHHHHHhHHHHHHHH---------
Q 013998           88 AYRIKGQ------LADLHA------AEVIKNM-EAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMS---------  145 (432)
Q Consensus        88 AYRiK~q------LadLh~------ae~~KN~-e~EkqVkFfQs~VA~AFAERD~slmEaEKaKE~Ee~m~---------  145 (432)
                      .|....-      +-.+.-      +++.++. .+|-++.-.++.++.+=++||--.-++|--+-.-..|-         
T Consensus       216 ~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~e  295 (775)
T PF10174_consen  216 RLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLE  295 (775)
T ss_pred             HhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            5543211      111111      3333332 25677777777777777777766333332222222222         


Q ss_pred             -----HHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHHHhhHhHHH
Q 013998          146 -----QKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKE  188 (432)
Q Consensus       146 -----qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~e~~~k  188 (432)
                           +.+..++.|++.+.+...+.+.=-+.|+.+|.....+.+.+-.
T Consensus       296 L~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqs  343 (775)
T PF10174_consen  296 LSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQS  343 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 2344455666666666666555556666666666555554433

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PRK02224 chromosome segregation protein; Provisional

Probab=94.06  E-value=10  Score=40.74  Aligned_cols=30  Identities=23%  Similarity=0.337  Sum_probs=18.6

Q ss_pred             hHHHHHHHHHHHHhhHHHHhhhhhhhHHHH
Q 013998          233 YISALEDELEKTRSSVENLQSKLRMGLEIE  262 (432)
Q Consensus       233 yisaLEee~e~lr~si~~LQskLR~glEIE  262 (432)
                      -+..|+.+++.++..++.+.+.+...-+++
T Consensus       483 ~~~~le~~l~~~~~~~e~l~~~~~~~~~l~  512 (880)
T PRK02224        483 ELEDLEEEVEEVEERLERAEDLVEAEDRIE  512 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456666677777776666666655544444

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=93.81  E-value=12  Score=40.57  Aligned_cols=88  Identities=16%  Similarity=0.244  Sum_probs=58.2

Q ss_pred             HHHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhhhHHH
Q 013998          239 DELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDV  318 (432)
Q Consensus       239 ee~e~lr~si~~LQskLR~glEIEnHLkk~~r~lEkkq~~~d~~i~Ngis~L~~~h~~~R~~Im~lL~e~~s~iks~~~~  318 (432)
                      +++..+|.++..+...+|-==|.=+-|++.+..|-|.  ..-...-..|-++-+---+|+.+|-+||.+-+ .|..-||.
T Consensus       447 ~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~--~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr-~lQkeiN~  523 (594)
T PF05667_consen  447 QEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKD--VNRSAYTRRILEIVKNIRKQKEEIEKILSDTR-ELQKEINS  523 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            4566677777776666666544444444444444333  33344455667777777789999999999876 46677899


Q ss_pred             HHhhhhccccc
Q 013998          319 IEEKTQHCDDV  329 (432)
Q Consensus       319 i~ek~~~~~n~  329 (432)
                      +..|+.-.+.+
T Consensus       524 l~gkL~RtF~v  534 (594)
T PF05667_consen  524 LTGKLDRTFTV  534 (594)
T ss_pred             HHHHHHhHHHH
Confidence            99999444455

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=93.58  E-value=9.2  Score=46.54  Aligned_cols=149  Identities=22%  Similarity=0.268  Sum_probs=106.5

Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHH---HHHHHhhHHHHHHHHHhhhhHHHHHhhh
Q 013998           51 RMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLH---AAEVIKNMEAEKQVKFFQGCMAAAFAER  127 (432)
Q Consensus        51 RM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadLh---~ae~~KN~e~EkqVkFfQs~VA~AFAER  127 (432)
                      +.--+|.++|+.|++.|+.++++..|.+.++..|+-|+   ...+..++   .+-.+...++|..|.-+|+-++.+..+=
T Consensus      1663 ~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~---~e~i~~~~~~~s~l~~~KrklE~~i~~l~~elee~~~~~ 1739 (1930)
T KOG0161|consen 1663 AEAERRLAALQAELEELREKLEALERARRQAELELEEL---AERVNELNAQNSSLTAEKRKLEAEIAQLQSELEEEQSEL 1739 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH---HHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34457999999999999999999999999999999875   56777777   4678889999999999999998877654


Q ss_pred             hhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHHHhhH-hHHHHHHHHHHHhhhhhhh
Q 013998          128 DNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE-SFKEVINKFYEIRQQSLEV  203 (432)
Q Consensus       128 D~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~e-~~~kVi~KFyeiR~~~~e~  203 (432)
                      -.+.=.+-||--.-.-|..+++.=++..--+++.-.-+.+.|-.||.-|..++.-+- .+.+.|.| .+-|.+++|-
T Consensus      1740 ~~~~Er~kka~~~a~~~~~el~~Eq~~~~~le~~k~~LE~~~kdLq~rL~e~E~~a~~~~k~~i~~-Learir~LE~ 1815 (1930)
T KOG0161|consen 1740 RAAEERAKKAQADAAKLAEELRKEQETSQKLERLKKSLERQVKDLQLRLDEAEQAALKGGKKQIAK-LEARIRELES 1815 (1930)
T ss_pred             HhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHH-HHHHHHHHHH
Confidence            444444444443444444555555555555555556666677778877777765443 33455654 4667766665

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=93.33  E-value=1.1  Score=40.58  Aligned_cols=43  Identities=37%  Similarity=0.358  Sum_probs=2.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHH
Q 013998           80 NLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAA  122 (432)
Q Consensus        80 nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqVkFfQs~VA~  122 (432)
                      .|++||+++||.+++++.--...-.++.++++...=-+..++.
T Consensus        78 ~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~  120 (194)
T PF08614_consen   78 KLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAE  120 (194)
T ss_dssp             ------------------------------------HHHHHHH
T ss_pred             cccccccccccccccccccccccccccchhhhhHHHHHHHHHH
Confidence            4889999999999999976555555555555554444433333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=92.98  E-value=15  Score=39.30  Aligned_cols=24  Identities=29%  Similarity=0.410  Sum_probs=12.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 013998           13 EALMARIQQLEHERDELRKDIEQL   36 (432)
Q Consensus        13 esl~aRI~qLEhERDELrKDIEqL   36 (432)
                      ..+...+..|+.+.+++.+.++.+
T Consensus       673 ~~l~~e~~~l~~~~~~l~~~l~~~  696 (1179)
T TIGR02168       673 LERRREIEELEEKIEELEEKIAEL  696 (1179)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555555555555544

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=92.87  E-value=17  Score=39.74  Aligned_cols=174  Identities=25%  Similarity=0.340  Sum_probs=114.7

Q ss_pred             hHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhh
Q 013998           50 TRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDN  129 (432)
Q Consensus        50 TRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqVkFfQs~VA~AFAERD~  129 (432)
                      +-|+.+=-..|++.-...-.++++|...|.+|.|-+.++--..+...-|    ..+-..+..+|.=||..|-+       
T Consensus       216 ~~~~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~esl----re~~~~L~~D~nK~~~y~~~-------  284 (581)
T KOG0995|consen  216 SELEDELKHRLEKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESL----REKKARLQDDVNKFQAYVSQ-------  284 (581)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHH----HHHHHHHHhHHHHHHHHHHH-------
Confidence            4455566667888777788999999999999999999888887777655    23334588899999988765       


Q ss_pred             hhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhccccc
Q 013998          130 SVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWE  209 (432)
Q Consensus       130 slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~~~~s~~  209 (432)
                        |+     -+-..|-++++...+-+++-++.+...+..|+.|+.-++.+                         ++|..
T Consensus       285 --~~-----~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q-------------------------~iS~~  332 (581)
T KOG0995|consen  285 --MK-----SKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQ-------------------------GISGE  332 (581)
T ss_pred             --HH-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------------------------CCCHH
Confidence              33     45566888888888888888888888877777766544433                         12211


Q ss_pred             chhhhhcccccccccccCcchhhhHHHHHHHHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHH
Q 013998          210 DKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISN  285 (432)
Q Consensus       210 ~Kc~~Ll~ds~~~WSfn~tStskyisaLEee~e~lr~si~~LQskLR~glEIEnHLkk~~r~lEkkq~~~d~~i~N  285 (432)
                      +==-   +..             =--.|..++.++...+|.|+.++   ++.+--.+.....+|++=+.+++.+++
T Consensus       333 dve~---mn~-------------Er~~l~r~l~~i~~~~d~l~k~v---w~~~l~~~~~f~~le~~~~~~~~l~~~  389 (581)
T KOG0995|consen  333 DVER---MNL-------------ERNKLKRELNKIQSELDRLSKEV---WELKLEIEDFFKELEKKFIDLNSLIRR  389 (581)
T ss_pred             HHHH---HHH-------------HHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1000   000             01245666666666666666543   344444455566677776666666655

>TIGR00606 rad50 rad50

Probab=92.63  E-value=23  Score=40.70  Aligned_cols=46  Identities=15%  Similarity=0.177  Sum_probs=27.3

Q ss_pred             HHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHH
Q 013998           53 HFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADL   98 (432)
Q Consensus        53 ~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadL   98 (432)
                      .-.+.+.++..++.++.....|..+-..+++.+.+.+.+...+..+
T Consensus       222 ir~~l~~~q~kie~~~~~~~~le~ei~~l~~~~~~l~~~~~~~~~l  267 (1311)
T TIGR00606       222 IRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKL  267 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345555666666666666666666666666666666555555444

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK02224 chromosome segregation protein; Provisional

Probab=92.48  E-value=18  Score=38.96  Aligned_cols=36  Identities=25%  Similarity=0.597  Sum_probs=24.9

Q ss_pred             chhhhHHHHHHHHHHHHhhHHHHhhhhhhhHHHHHHhHH
Q 013998          229 STSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKK  267 (432)
Q Consensus       229 StskyisaLEee~e~lr~si~~LQskLR~glEIEnHLkk  267 (432)
                      .....+..+++.++.++..++.|...+.   .++..+..
T Consensus       657 ~~~~~~~~l~~~l~~~~~~~~~l~~~i~---~~~~~~e~  692 (880)
T PRK02224        657 RAEEYLEQVEEKLDELREERDDLQAEIG---AVENELEE  692 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence            4566778888888888888888887765   34444443

>PRK10884 SH3 domain-containing protein; Provisional

Probab=92.47  E-value=2.3  Score=40.07  Aligned_cols=71  Identities=21%  Similarity=0.301  Sum_probs=57.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHH
Q 013998           12 SEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRI   91 (432)
Q Consensus        12 ~esl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRi   91 (432)
                      ..++..|+..|+.|-.+|+.....+=-+             +.+|++.|++.+....+.......+|..|.++|..   .
T Consensus        88 ~p~~~~rlp~le~el~~l~~~l~~~~~~-------------~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~---~  151 (206)
T PRK10884         88 TPSLRTRVPDLENQVKTLTDKLNNIDNT-------------WNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIV---A  151 (206)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHhH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence            4567788888999888888777774322             67999999999999999999999999999999987   3


Q ss_pred             HHHHHHH
Q 013998           92 KGQLADL   98 (432)
Q Consensus        92 K~qLadL   98 (432)
                      +..+..|
T Consensus       152 ~~~~~~l  158 (206)
T PRK10884        152 QKKVDAA  158 (206)
T ss_pred             HHHHHHH
Confidence            4555444

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=92.16  E-value=13  Score=40.27  Aligned_cols=173  Identities=19%  Similarity=0.278  Sum_probs=90.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHH
Q 013998           11 ESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYR   90 (432)
Q Consensus        11 ~~esl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYR   90 (432)
                      .....+.||+.||+.--+|+.-+...= ....|.-.+..-.=+-.++..|.++++.|..++.+-+++|..|-.-..   .
T Consensus        44 Ek~~~~~~V~eLE~sL~eLk~q~~~~~-~~~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~---E  119 (617)
T PF15070_consen   44 EKEHDISRVQELERSLSELKNQMAEPP-PPEPPAGPSEVEQQLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQ---E  119 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccC-CccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence            356677888888887777765443311 222222111111123446777999999999999999999987733222   3


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhH
Q 013998           91 IKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNA  170 (432)
Q Consensus        91 iK~qLadLh~ae~~KN~e~EkqVkFfQs~VA~AFAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qK~~n~  170 (432)
                      -+..|++|-..--....+.+-    -++-+|+.=++|    .-+-+|-..-..+-+++.+++.+.-.++....   .+..
T Consensus       120 qEerL~ELE~~le~~~e~~~D----~~kLLe~lqsdk----~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~---elt~  188 (617)
T PF15070_consen  120 QEERLAELEEELERLQEQQED----RQKLLEQLQSDK----ATASRALSQNRELKEQLAELQDAFVKLTNENM---ELTS  188 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----HHHHHhhhcccc----hHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh---HhhH
Confidence            356666652211001111111    112222221111    12333333334444555555555554433222   3457


Q ss_pred             HHhhhHHHHHHhhHhHHHHHHHHHHHhh
Q 013998          171 TLRFDLEKQEELNESFKEVINKFYEIRQ  198 (432)
Q Consensus       171 ~Lq~dl~~~~eq~e~~~kVi~KFyeiR~  198 (432)
                      +||.+.-.-++.+..+-.+=.|...++-
T Consensus       189 ~lq~Eq~~~keL~~kl~~l~~~l~~~~e  216 (617)
T PF15070_consen  189 ALQSEQHVKKELQKKLGELQEKLHNLKE  216 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7887777777777666666666665553

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=92.08  E-value=4.5  Score=35.63  Aligned_cols=100  Identities=23%  Similarity=0.290  Sum_probs=71.9

Q ss_pred             CchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHH
Q 013998           43 PSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAA  122 (432)
Q Consensus        43 pgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqVkFfQs~VA~  122 (432)
                      ...+....||.++ ...+|-|+-.||.+++...++...|.+|+....+--..+.    +.......+++           
T Consensus        12 ~~~~~~ve~L~s~-lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~----~~~~~~~~L~~-----------   75 (120)
T PF12325_consen   12 GPSVQLVERLQSQ-LRRLEGELASLQEELARLEAERDELREEIVKLMEENEELR----ALKKEVEELEQ-----------   75 (120)
T ss_pred             CchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH-----------
Confidence            3344566677654 6778999999999999999999999999988766544442    22333334443           


Q ss_pred             HHhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 013998          123 AFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQ  168 (432)
Q Consensus       123 AFAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qK~~  168 (432)
                                +.+....+-.++++-+-+-.++++||+.++.+.|.+
T Consensus        76 ----------el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~m  111 (120)
T PF12325_consen   76 ----------ELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEM  111 (120)
T ss_pred             ----------HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence                      334455778888888888889999999999888854

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PRK09039 hypothetical protein; Validated

Probab=92.00  E-value=14  Score=36.84  Aligned_cols=156  Identities=17%  Similarity=0.194  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHH
Q 013998           15 LMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQ   94 (432)
Q Consensus        15 l~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~q   94 (432)
                      |...|..++.|-++|..-|-.          ++..-.|=-.|++.|+++|..++.++....+.+.-|+.-+...|.    
T Consensus        44 Ls~~i~~~~~eL~~L~~qIa~----------L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~----  109 (343)
T PRK09039         44 LSREISGKDSALDRLNSQIAE----------LADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAG----  109 (343)
T ss_pred             HHHHHhhHHHHHHHHHHHHHH----------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----
Confidence            556788888899999988876          777788888999999999999999988776666544443332211    


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHhh
Q 013998           95 LADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRF  174 (432)
Q Consensus        95 LadLh~ae~~KN~e~EkqVkFfQs~VA~AFAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~  174 (432)
                                ...+++.++.=.+.-++..-++=.-+-=.....+..=+++-.+++.++..+...+..-.+++..=..|+.
T Consensus       110 ----------~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~  179 (343)
T PRK09039        110 ----------AGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGR  179 (343)
T ss_pred             ----------hcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      1112222222222222211111111112233444334444445555555555555555444444455555


Q ss_pred             hHHHHHHh-hHhHHHHHHHHH
Q 013998          175 DLEKQEEL-NESFKEVINKFY  194 (432)
Q Consensus       175 dl~~~~eq-~e~~~kVi~KFy  194 (432)
                      .|....++ ...+...=..||
T Consensus       180 ~L~~a~~~~~~~l~~~~~~~~  200 (343)
T PRK09039        180 RLNVALAQRVQELNRYRSEFF  200 (343)
T ss_pred             HHHHHHHHHHHHHHHhHHHHH
Confidence            55555544 333334444444

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=91.40  E-value=30  Score=39.37  Aligned_cols=6  Identities=0%  Similarity=0.047  Sum_probs=2.3

Q ss_pred             cccccC
Q 013998          352 VHINND  357 (432)
Q Consensus       352 vHvs~d  357 (432)
                      +|+.|.
T Consensus      1052 i~a~pp 1057 (1163)
T COG1196        1052 ISARPP 1057 (1163)
T ss_pred             EEEECC
Confidence            333333

>PRK03918 chromosome segregation protein; Provisional

Probab=91.16  E-value=24  Score=37.75  Aligned_cols=30  Identities=17%  Similarity=0.250  Sum_probs=14.7

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHhHHH
Q 013998          133 EAEKAKEKEELMSQKFNEFQTRLEELSSEN  162 (432)
Q Consensus       133 EaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~  162 (432)
                      +++.+..+-+...+++.+.+..+.+++..+
T Consensus       606 ~~~~~~~~l~~~~~~l~~~~~~l~~~~~~i  635 (880)
T PRK03918        606 ELKDAEKELEREEKELKKLEEELDKAFEEL  635 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444445444444455555555554444444

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=90.98  E-value=26  Score=37.85  Aligned_cols=33  Identities=30%  Similarity=0.455  Sum_probs=18.5

Q ss_pred             hhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHH
Q 013998           56 RTAGLEQEIEILKQKIAACARENSNLQEELSEA   88 (432)
Q Consensus        56 RtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEA   88 (432)
                      +...+..+++.+..++.....+-..+.+++.+.
T Consensus       231 ~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~  263 (1164)
T TIGR02169       231 EKEALERQKEAIERQLASLEEELEKLTEEISEL  263 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555556666666666655555555555543

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PRK04863 mukB cell division protein MukB; Provisional

Probab=90.73  E-value=43  Score=39.99  Aligned_cols=45  Identities=22%  Similarity=0.366  Sum_probs=31.4

Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHH
Q 013998           51 RMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADL   98 (432)
Q Consensus        51 RM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadL   98 (432)
                      |.++.-+++..+.....+++|...-..-..+.+++.   -|+.++.+|
T Consensus       282 R~liEEAag~r~rk~eA~kkLe~tE~nL~rI~diL~---ELe~rL~kL  326 (1486)
T PRK04863        282 RVHLEEALELRRELYTSRRQLAAEQYRLVEMARELA---ELNEAESDL  326 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence            677888888888788777777777666666666664   355566655

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=90.71  E-value=12  Score=33.40  Aligned_cols=125  Identities=26%  Similarity=0.335  Sum_probs=87.0

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccch
Q 013998          132 MEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDK  211 (432)
Q Consensus       132 mEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~~~~s~~~K  211 (432)
                      +|++-|-++-+..-+++.+++.|....+..+..+..-|..|..++..+.++......-+.                    
T Consensus         7 ~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~le--------------------   66 (143)
T PF12718_consen    7 LEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLE--------------------   66 (143)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence            455566666666668888888888888888887777788888888877766653332222                    


Q ss_pred             hhhhcccccccccccCcchhhhHHHHHHHHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHH
Q 013998          212 CACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFI  283 (432)
Q Consensus       212 c~~Ll~ds~~~WSfn~tStskyisaLEee~e~lr~si~~LQskLR~glEIEnHLkk~~r~lEkkq~~~d~~i  283 (432)
                            .+...-+-+ .+..+-|.-||++++.....+.-..-|||=.=-==.|+-|+|..||.+..-|..=+
T Consensus        67 ------e~~~~~~~~-E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~  131 (143)
T PF12718_consen   67 ------ESEKRKSNA-EQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKY  131 (143)
T ss_pred             ------hHHHHHHhH-HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHH
Confidence                  111100000 16677899999999999999988888888332223499999999999887776543

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PRK11637 AmiB activator; Provisional

Probab=88.34  E-value=30  Score=34.80  Aligned_cols=35  Identities=14%  Similarity=0.182  Sum_probs=20.8

Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHH
Q 013998           52 MHFQRTAGLEQEIEILKQKIAACARENSNLQEELS   86 (432)
Q Consensus        52 M~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELs   86 (432)
                      +++.-++.++++++.+++++...-.+-..++.++.
T Consensus        37 ~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~~~   71 (428)
T PRK11637         37 AFSAHASDNRDQLKSIQQDIAAKEKSVRQQQQQRA   71 (428)
T ss_pred             hhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444566777788887777655544444444444

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=87.51  E-value=48  Score=36.21  Aligned_cols=68  Identities=28%  Similarity=0.410  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHH
Q 013998           15 LMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQ   94 (432)
Q Consensus        15 l~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~q   94 (432)
                      |+.=|+||+-|||+..--+             .--..+|-||.+.|-.++.+|++....-.+.=..|...|++   +|.+
T Consensus         2 l~e~l~qlq~Erd~ya~~l-------------k~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~e---Lk~q   65 (617)
T PF15070_consen    2 LMESLKQLQAERDQYAQQL-------------KEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSE---LKNQ   65 (617)
T ss_pred             hHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHh
Confidence            4566899999999954322             22345799999999999999999877777777777777777   6777


Q ss_pred             HHHH
Q 013998           95 LADL   98 (432)
Q Consensus        95 LadL   98 (432)
                      ++..
T Consensus        66 ~~~~   69 (617)
T PF15070_consen   66 MAEP   69 (617)
T ss_pred             hccc
Confidence            7744

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=86.55  E-value=28  Score=32.60  Aligned_cols=54  Identities=26%  Similarity=0.300  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHH
Q 013998          139 EKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINK  192 (432)
Q Consensus       139 E~Ee~m~qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~e~~~kVi~K  192 (432)
                      ++-..+.+++.+.+.|.+.++..+..+.+..+.|..+|...++......+-++.
T Consensus       176 ~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~  229 (237)
T PF00261_consen  176 EKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQ  229 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444566666666666666666666666777777776666666655555543

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=86.29  E-value=14  Score=40.64  Aligned_cols=28  Identities=11%  Similarity=0.200  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHhhhhccchhhhhHHHHHh
Q 013998          294 HSQLRVHVVNSLEEGRSHIKSISDVIEE  321 (432)
Q Consensus       294 h~~~R~~Im~lL~e~~s~iks~~~~i~e  321 (432)
                      =..|+..|-++|.+...+|+..|+.|..
T Consensus       683 ~~~Q~~~I~~iL~~~~~~I~~~v~~ik~  710 (717)
T PF10168_consen  683 SESQKRTIKEILKQQGEEIDELVKQIKN  710 (717)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567889999999999999999988764

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=85.05  E-value=57  Score=34.74  Aligned_cols=47  Identities=23%  Similarity=0.348  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHH
Q 013998           13 EALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQ   62 (432)
Q Consensus        13 esl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQ   62 (432)
                      +.+.+++.+++.++++.++.+.++|   +|+++++.++-.+.+=-.-++.
T Consensus       265 ~~Le~ei~~le~e~~e~~~~l~~l~---~~~~p~~l~~~ll~~~~~q~~~  311 (650)
T TIGR03185       265 EQLERQLKEIEAARKANRAQLRELA---ADPLPLLLIPNLLDSTKAQLQK  311 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh---cccCCHhhhHHHHHHHHHHHHH
Confidence            4666777777777777777665554   7788888887666543333433

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=84.91  E-value=68  Score=35.51  Aligned_cols=44  Identities=32%  Similarity=0.360  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHHHHhhh
Q 013998          234 ISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKII  277 (432)
Q Consensus       234 isaLEee~e~lr~si~~LQskLR~glEIEnHLkk~~r~lEkkq~  277 (432)
                      ++.++.+++.+++.++.+..++-=+-..-..|+.+...++....
T Consensus       690 ~~~~~~el~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  733 (908)
T COG0419         690 LEQLEEELEQLREELEELLKKLGEIEQLIEELESRKAELEELKK  733 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77789999999999888777764421223334444444444333

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=84.71  E-value=96  Score=37.07  Aligned_cols=92  Identities=18%  Similarity=0.053  Sum_probs=42.5

Q ss_pred             hhhHHHHHHHHHHHHHhhh-hhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHHH
Q 013998           58 AGLEQEIEILKQKIAACAR-ENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEK  136 (432)
Q Consensus        58 A~LEQeIE~Lkkkl~~c~r-En~nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqVkFfQs~VA~AFAERD~slmEaEK  136 (432)
                      ++|++.|+.++.....|.| +--=+|.+.+++-+.=++..+.-..--..+.+++.+++=-|-..+.++-+-+++.-+.-.
T Consensus       468 keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~  547 (1317)
T KOG0612|consen  468 KELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQ  547 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            3455555555555555554 222234444444433333333333333344444444444455555555555555554444


Q ss_pred             hHHHHHHHHHHHH
Q 013998          137 AKEKEELMSQKFN  149 (432)
Q Consensus       137 aKE~Ee~m~qk~~  149 (432)
                      +.+.+..|..++.
T Consensus       548 le~~~~d~~~e~~  560 (1317)
T KOG0612|consen  548 LEEAELDMRAESE  560 (1317)
T ss_pred             HHHhhhhhhhhHH
Confidence            4455555554444

>smart00787 Spc7 Spc7 kinetochore protein

Probab=84.40  E-value=47  Score=33.23  Aligned_cols=122  Identities=20%  Similarity=0.237  Sum_probs=77.8

Q ss_pred             hhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhh-hhhhhHHH
Q 013998           56 RTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAE-RDNSVMEA  134 (432)
Q Consensus        56 RtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqVkFfQs~VA~AFAE-RD~slmEa  134 (432)
                      |+.-++-=++.|...+.+.-.|...|-..+..+=.++-.|-+.|..=-.+-..+.+.+..+++|=..-+.. | ..|   
T Consensus       138 R~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk-~~l---  213 (312)
T smart00787      138 RMKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAK-EKL---  213 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHH-HHH---
Confidence            55555555667777788888888888877777777777777777655555555555555555554322211 1 111   


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHHH
Q 013998          135 EKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEE  181 (432)
Q Consensus       135 EKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~e  181 (432)
                      .+....-+.+.+++.+++.++.++.+.+.+-+.....++.+++..+.
T Consensus       214 ~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~  260 (312)
T smart00787      214 KKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK  260 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11223345566778888888888888887777777666666666543

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PRK03918 chromosome segregation protein; Provisional

Probab=84.13  E-value=65  Score=34.59  Aligned_cols=63  Identities=25%  Similarity=0.325  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH---------HHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhh
Q 013998           15 LMARIQQLEHERDELRKDIEQL---------CMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARE   77 (432)
Q Consensus        15 l~aRI~qLEhERDELrKDIEqL---------CMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rE   77 (432)
                      +..++.+++.+.++|.+-++.|         |-+.=||.|-.-.+-=+-+....|+.+|+.|++++..+..+
T Consensus       410 l~~~~~~~~~~i~eL~~~l~~L~~~~~~Cp~c~~~L~~~~~~el~~~~~~ei~~l~~~~~~l~~~~~~l~~~  481 (880)
T PRK03918        410 ITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKE  481 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444455555444322         34444454533333334455555666666666655555443

>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin

Probab=83.93  E-value=2.6  Score=37.15  Aligned_cols=55  Identities=24%  Similarity=0.284  Sum_probs=43.1

Q ss_pred             HHHhhhhHHHHHhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHHH
Q 013998          113 VKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEE  181 (432)
Q Consensus       113 VkFfQs~VA~AFAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~e  181 (432)
                      ++|-|+=-+.  -|||.+.||.|||.            +..|+..|+.....|+.+|..|..-..+|+-
T Consensus         6 l~fLQ~Ew~r--~ErdR~~WeiERaE------------mkarIa~LEGE~r~~e~l~~dL~rrIkMLE~   60 (134)
T PF08232_consen    6 LHFLQTEWHR--FERDRNQWEIERAE------------MKARIAFLEGERRGQENLKKDLKRRIKMLEY   60 (134)
T ss_pred             HHHHHHHHHH--HHHHHHHhHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3566665544  38999999999986            6678888889998899888888877777754

Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=83.00  E-value=4.9  Score=43.11  Aligned_cols=122  Identities=21%  Similarity=0.199  Sum_probs=55.6

Q ss_pred             HHHHHHHhHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccchhhhhcccccccccccCcchh
Q 013998          152 QTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTS  231 (432)
Q Consensus       152 e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~~~~s~~~Kc~~Ll~ds~~~WSfn~tSts  231 (432)
                      .+++..|+..+..+.+-+..|+.++..++.+.+..        .+|+     .--...-|+=.|=+.|...|-+.-.   
T Consensus       502 ~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~--------~L~g-----~~~~~~trVL~lr~NP~~~~~~~k~---  565 (722)
T PF05557_consen  502 SEELNELQKEIEELERENERLRQELEELESELEKL--------TLQG-----EFNPSKTRVLHLRDNPTSKAEQIKK---  565 (722)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------CCCT-------BTTTEEEEEESS-HHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hhcc-----ccCCCCceeeeeCCCcHHHHHHHHH---
Confidence            34444455555555555555555555555444310        0111     0012233444555555554444322   


Q ss_pred             hhHHHHHHHHHHHHhhHHHHhhhhhh--------hHHHH----HHhHHhHHHHHHhhhhhHHHHHHHHHH
Q 013998          232 KYISALEDELEKTRSSVENLQSKLRM--------GLEIE----NHLKKSVRELEKKIIHSDKFISNAIAE  289 (432)
Q Consensus       232 kyisaLEee~e~lr~si~~LQskLR~--------glEIE----nHLkk~~r~lEkkq~~~d~~i~Ngis~  289 (432)
                      .=+.+|-.|++.|++.+..|...-..        ++..-    +-|+..+..+||+..-+-.++..-+.+
T Consensus       566 ~~l~~L~~En~~L~~~l~~le~~~~~~~~~~p~~~~~~~~~e~~~l~~~~~~~ekr~~RLkevf~~ks~e  635 (722)
T PF05557_consen  566 STLEALQAENEDLLARLRSLEEGNSQPVDAVPTSSLESQEKEIAELKAELASAEKRNQRLKEVFKAKSQE  635 (722)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTT----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            23566777777777777555432111        12111    235666666666665555555544443

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>PRK11637 AmiB activator; Provisional

Probab=80.36  E-value=69  Score=32.30  Aligned_cols=117  Identities=12%  Similarity=0.183  Sum_probs=53.1

Q ss_pred             HhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHH-HHHHHHHHHH--------HHHH-h-hHHHHHHHHHhhhhHHHH
Q 013998           55 QRTAGLEQEIEILKQKIAACARENSNLQEELSEAYR-IKGQLADLHA--------AEVI-K-NMEAEKQVKFFQGCMAAA  123 (432)
Q Consensus        55 QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYR-iK~qLadLh~--------ae~~-K-N~e~EkqVkFfQs~VA~A  123 (432)
                      +....++++|..++.++.....+=..++.+|...+. ++.++...|.        .=++ . ...+..-+.||.     .
T Consensus        89 ~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~~g~~~~l~vLl~a~~~~~~~r~~~~l~-----~  163 (428)
T PRK11637         89 RKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFRQGEHTGLQLILSGEESQRGERILAYFG-----Y  163 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHhcCCChhHHHHHHHHHH-----H
Confidence            344445555555555555555555555555555543 2333334444        1111 1 112332223332     2


Q ss_pred             HhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHH
Q 013998          124 FAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEK  178 (432)
Q Consensus       124 FAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~  178 (432)
                      |+.-|..+++.=+.  .......+-.+++....+++....+++.....|+.....
T Consensus       164 i~~~d~~~l~~l~~--~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e  216 (428)
T PRK11637        164 LNQARQETIAELKQ--TREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNE  216 (428)
T ss_pred             HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55557777764322  222333444455555555555554444444444444333

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=80.12  E-value=72  Score=32.53  Aligned_cols=80  Identities=30%  Similarity=0.431  Sum_probs=53.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHH------HHhhhhhHHHHHHHHHHHHHhhhhhcchHHH
Q 013998           11 ESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMH------FQRTAGLEQEIEILKQKIAACARENSNLQEE   84 (432)
Q Consensus        11 ~~esl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~------~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEE   84 (432)
                      ..+.|-.+++.||.|-..||...-+|=.--+  .| -=--+|+      --++|+  +.|-.|..-|+.++.+|...|+|
T Consensus       161 ~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~--~~-EekEqqLv~dcv~QL~~An--~qia~LseELa~k~Ee~~rQQEE  235 (306)
T PF04849_consen  161 QLEALQEKLKSLEEENEQLRSEASQLKTETD--TY-EEKEQQLVLDCVKQLSEAN--QQIASLSEELARKTEENRRQQEE  235 (306)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHh--hc-cHHHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHHHHHHHHHHH
Confidence            3588999999999988888887766632111  00 0001111      112333  34788888899999999999998


Q ss_pred             HHHHHHHHHHHHHH
Q 013998           85 LSEAYRIKGQLADL   98 (432)
Q Consensus        85 LsEAYRiK~qLadL   98 (432)
                      .+   ++-+|++||
T Consensus       236 It---~Llsqivdl  246 (306)
T PF04849_consen  236 IT---SLLSQIVDL  246 (306)
T ss_pred             HH---HHHHHHHHH
Confidence            87   578888888

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PHA02562 46 endonuclease subunit; Provisional

Probab=80.02  E-value=72  Score=32.32  Aligned_cols=24  Identities=21%  Similarity=0.444  Sum_probs=15.6

Q ss_pred             hHHHHHHHHHHHHhhHHHHhhhhh
Q 013998          233 YISALEDELEKTRSSVENLQSKLR  256 (432)
Q Consensus       233 yisaLEee~e~lr~si~~LQskLR  256 (432)
                      =|+.|+.++..+..+++.++...+
T Consensus       307 ~i~~l~~~l~~l~~~i~~~~~~~~  330 (562)
T PHA02562        307 KLKELQHSLEKLDTAIDELEEIMD  330 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566677777777777765555554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	432
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-09
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	9e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	8e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	9e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-04
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	5e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.9 bits (157), Expect = 3e-11
 Identities = 65/488 (13%), Positives = 153/488 (31%), Gaps = 160/488 (32%)

Query: 18  RIQQLEHERDELRKDIEQLC---------MQQAGPSYLAVAT--------RMHFQ---RT 57
           R+Q       +LR+ + +L          +  +G +++A+          +M F+     
Sbjct: 133 RLQPYL----KLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188

Query: 58  AGLEQEIE-ILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFF 116
                  E +L+       + + N       +  IK ++  +     ++ +   K    +
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI--QAELRRLLKSKP---Y 243

Query: 117 QGCM-----------AAAFA--------ERDNSVMEAEKAKEKEEL----MSQKFNEFQT 153
           + C+             AF          R   V +   A     +     S      + 
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303

Query: 154 RLEELSSENIELKKQNATLRFDL-----------------EKQEELN--ESFKEV-INKF 193
             + L  + ++ + Q      DL                   ++ L   +++K V  +K 
Sbjct: 304 --KSLLLKYLDCRPQ------DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355

Query: 194 YEIRQQSLEVLETSWEDK-----CACLLLDS-------AEMWSFNDTSTSKYI------- 234
             I + SL VLE + E +      +     +       + +W     S    +       
Sbjct: 356 TTIIESSLNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414

Query: 235 SALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKII----------------- 277
           S +E + +++  S+ ++  +L++ LE E         L + I+                 
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENE-------YALHRSIVDHYNIPKTFDSDDLIPP 467

Query: 278 HSDKFISNAIA--------------------ELRLCHSQLRVHVVNSLEEGRSHIKSISD 317
           + D++  + I                     + R    ++R H   +     S + ++  
Sbjct: 468 YLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR-HDSTAWNASGSILNTLQQ 526

Query: 318 VIEEKTQHCDDVIRGQNTGTYQRETK-LDEFECR-DVHINNDADTNLV----SQRNDPAY 371
           +   K   CD      N   Y+R    + +F  + + ++     T+L+       ++  +
Sbjct: 527 LKFYKPYICD------NDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIF 580

Query: 372 CDIEADRK 379
              EA ++
Sbjct: 581 --EEAHKQ 586

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.7 bits (141), Expect = 2e-09
 Identities = 52/380 (13%), Positives = 110/380 (28%), Gaps = 117/380 (30%)

Query: 129 NSVMEAEKA----KEKEELMSQKFNEFQT-RLEELSSENIELKKQNATLRFDLEKQEELN 183
             V +  K+    +E + ++  K     T RL       +  K++    +F +E+   +N
Sbjct: 36  KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT----LLSKQEEMVQKF-VEEVLRIN 90

Query: 184 ESFKEVINKF-YEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTST-SKYISALEDEL 241
             F  +++    E RQ S+      + ++   L         +ND    +KY  +     
Sbjct: 91  YKF--LMSPIKTEQRQPSMM--TRMYIEQRDRL---------YNDNQVFAKYNVSRLQPY 137

Query: 242 EKTRSSVENLQSKLRMGLEIENH----LKKSVRELEKKIIHSDKFI---SNAI--AELRL 292
            K R ++  L+    + +           K+   +   +  S K        I    L+ 
Sbjct: 138 LKLRQALLELRPAKNVLI----DGVLGSGKTW--VALDVCLSYKVQCKMDFKIFWLNLKN 191

Query: 293 CHS---------QLRVHVVNSLEEGRSHIKSISDVIEE------------KTQHC----D 327
           C+S         +L   +  +      H  +I   I                ++C     
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251

Query: 328 DVIRGQNTGTYQRETKLDEFE--C------RDVHINNDADTNLVSQRNDPAYCDIEADRK 379
           +V   QN          + F   C      R   + +       +         ++    
Sbjct: 252 NV---QNAKA------WNAFNLSCKILLTTRFKQVTDFLSAATTTHI------SLDHHSM 296

Query: 380 G----EASETLAQALQEKVAAL---------LLLSQ-----QEE-------RHLLERNVN 414
                E    L + L  +   L           LS      ++        +H+    + 
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356

Query: 415 SALQKKIEEL----QRNLFQ 430
           + ++  +  L     R +F 
Sbjct: 357 TIIESSLNVLEPAEYRKMFD 376

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 57.5 bits (139), Expect = 5e-09
 Identities = 49/280 (17%), Positives = 101/280 (36%), Gaps = 27/280 (9%)

Query: 3    ENSKEKENESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQ 62
            E   E E     L A+ Q+LE    E+   IE+              ++        ++Q
Sbjct: 906  ELYAEAEEMRVRLAAKKQELEEILHEMEARIEEE----------EERSQQLQAEKKKMQQ 955

Query: 63   EIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAA 122
            ++  L++++         LQ E   A     ++ D       +N +  K+ K  +  ++ 
Sbjct: 956  QMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSD 1015

Query: 123  A---FAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQ 179
                 AE +       K K K E      +E + RL++      EL+K    L  +    
Sbjct: 1016 LTTNLAEEEEKAKNLTKLKNKHE---SMISELEVRLKKEEKSRQELEKIKRKLEGESSDL 1072

Query: 180  EELNESFKEVINKFYEI---RQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISA 236
             E     +  I +       +++ L+      ED+ +       ++          +IS 
Sbjct: 1073 HEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKI-----RELESHISD 1127

Query: 237  LEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKI 276
            L+++LE  +++    + + R   ++   L+    ELE  +
Sbjct: 1128 LQEDLESEKAARNKAEKQKR---DLSEELEALKTELEDTL 1164

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 52.5 bits (126), Expect = 2e-07
 Identities = 50/270 (18%), Positives = 100/270 (37%), Gaps = 12/270 (4%)

Query: 55   QRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVK 114
            +R    E E++ L+QK      E + LQE+L     +  +  ++      K  E E+ + 
Sbjct: 871  ERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILH 930

Query: 115  FFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRF 174
              +  +            E +K +++   + ++  E +   ++L  E +    +   +  
Sbjct: 931  EMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMED 990

Query: 175  DLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYI 234
            D+   E+ N    +      E        L    E+K   L     +            I
Sbjct: 991  DILIMEDQNNKLTKERKLLEERVSDLTTNLAEE-EEKAKNLTKLKNKH--------ESMI 1041

Query: 235  SALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCH 294
            S LE  L+K   S + L+   R      + L + + EL+ +I      ++    EL+   
Sbjct: 1042 SELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAAL 1101

Query: 295  SQL---RVHVVNSLEEGRSHIKSISDVIEE 321
            ++L        N+L++ R     ISD+ E+
Sbjct: 1102 ARLEDETSQKNNALKKIRELESHISDLQED 1131

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 44.1 bits (104), Expect = 9e-05
 Identities = 30/205 (14%), Positives = 68/205 (33%), Gaps = 24/205 (11%)

Query: 1    MDENSKEKENESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGL 60
            M++ + +   E + L  R+  L     E  +  + L   +                    
Sbjct: 995  MEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNK-----------------H 1037

Query: 61   EQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCM 120
            E  I  L+ ++    +E  + QE      +++G+ +DLH     +  E + Q+   +  +
Sbjct: 1038 ESMISELEVRL---KKEEKSRQELEKIKRKLEGESSDLHE----QIAELQAQIAELKAQL 1090

Query: 121  AAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQE 180
            A    E   ++   E    ++    +K  E ++ + +L  +    K              
Sbjct: 1091 AKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLS 1150

Query: 181  ELNESFKEVINKFYEIRQQSLEVLE 205
            E  E+ K  +    +      E+  
Sbjct: 1151 EELEALKTELEDTLDTTATQQELRG 1175

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 44.3 bits (105), Expect = 8e-05
 Identities = 26/175 (14%), Positives = 62/175 (35%), Gaps = 15/175 (8%)

Query: 3    ENSKEKENESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQ 62
            +     EN+   L  +I +   E   L + +  L   +   S      R   +R    E+
Sbjct: 921  KLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNL---EITYSTETEKLRSDVERLRMSEE 977

Query: 63   EIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAA 122
            E +    ++ +   E + L++EL +    K  + +       +  +   ++         
Sbjct: 978  EAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSEL--------- 1028

Query: 123  AFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLE 177
               +  N++++ EK +    +  Q     +T  ++L  E  +L+      R   +
Sbjct: 1029 ---KEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 43.9 bits (104), Expect = 9e-05
 Identities = 34/197 (17%), Positives = 83/197 (42%), Gaps = 13/197 (6%)

Query: 6    KEKENESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIE 65
                           Q  + R   ++++++L ++       A +   + +   GLE +I 
Sbjct: 879  ARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIE-------ARSVERYKKLHIGLENKIM 931

Query: 66   ILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFA 125
             L++KI    +E  +L E+++          +   ++V +   +E++ K     + +   
Sbjct: 932  QLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQE 991

Query: 126  ERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNES 185
            E      E  + + +++ + +  ++++   E+L S   ELK+QN  L+    ++EELN  
Sbjct: 992  EIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVS---ELKEQNTLLK---TEKEELNRR 1045

Query: 186  FKEVINKFYEIRQQSLE 202
              +   +  E  ++ L 
Sbjct: 1046 IHDQAKEITETMEKKLV 1062

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 45/296 (15%), Positives = 93/296 (31%), Gaps = 41/296 (13%)

Query: 30   RKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILK-QKIAACARENSNLQEELSEA 88
            R     L   +A         RM+  R          +  Q +       +  Q  L E 
Sbjct: 807  RCYATFLRRTRAAIIIQKFQ-RMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREH 865

Query: 89   YRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKF 148
              I  Q         +      K + + Q C     A+R     E +K K +        
Sbjct: 866  KSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKR-----ELKKLKIEAR------ 914

Query: 149  NEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSW 208
                  +E     +I L+ +   L+  +++Q +  +S  E +N            LE ++
Sbjct: 915  -----SVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNN-----------LEITY 958

Query: 209  EDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKS 268
              +   L  D   +               E+E +   + V +LQ ++    +  +  +  
Sbjct: 959  STETEKLRSDVERL------------RMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTE 1006

Query: 269  VRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKTQ 324
             + +E+            ++EL+  ++ L+              K I++ +E+K  
Sbjct: 1007 KKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLV 1062

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score = 41.4 bits (97), Expect = 5e-04
 Identities = 30/281 (10%), Positives = 77/281 (27%), Gaps = 38/281 (13%)

Query: 2    DENSKEKENESEALMARIQQLEHERDELRKDIEQLCM------QQAGPSYLAVATRMHFQ 55
            +          +        L       R  +    +       +A    L    R ++ 
Sbjct: 1833 NPQYIAPPVFIQEAEIMGNNLMAIPPSHRDAVVSSLVYIHQTIGEANIRLLKRQGRQNYV 1892

Query: 56   RTAGLEQEIE----ILKQK----IAACARENSNLQ---EELSEAYRIKGQLADLHAAEVI 104
                    I     ++ +K           N  L+   +  ++   ++  LA  +    +
Sbjct: 1893 TPRHYLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDV 1952

Query: 105  KNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIE 164
            KN +A +++K       AA  ++ ++     +   + + ++ +  +    LE+       
Sbjct: 1953 KNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPL 2012

Query: 165  -------LKKQNATLRFDLEKQEELNESFKEV--INKFYEIRQQSLEVLETSWEDKCACL 215
                       N       E    +    K +    + Y    +  E ++T         
Sbjct: 2013 REEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSK--VKN 2070

Query: 216  LLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLR 256
             +D +             +  L  E  +     EN  +++ 
Sbjct: 2071 KVDRSI----------ALLDNLNSERGRWEQQSENFNTQMS 2101

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	432
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	90.78
3s4r_A	93	Vimentin; alpha-helix, cytoskeleton, intermediate	89.09
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	88.54
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	86.2
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	86.19
1m1j_B	464	Fibrinogen beta chain; coiled coils, disulfide rin	85.17
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	84.97
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	84.5
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	84.34
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	81.1
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	80.54
1go4_E	100	MAD1 (mitotic arrest deficient)-like 1; mitotic sp	80.38
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	80.27
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	80.01

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=90.78  E-value=2.4  Score=40.96  Aligned_cols=62  Identities=10%  Similarity=0.137  Sum_probs=39.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhh
Q 013998          137 AKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQ  198 (432)
Q Consensus       137 aKE~Ee~m~qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~  198 (432)
                      .++..+..-+++..+++..++++..+.++|+.-..++.+.+..+.+...+...+++=|+-|.
T Consensus       528 ~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~~~~~  589 (597)
T 3oja_B          528 RRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPDTRR  589 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-------
T ss_pred             HHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence            33444444556666777777777777777777778888888887777777777877777665

>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A

Probab=89.09  E-value=1.9  Score=35.00  Aligned_cols=65  Identities=22%  Similarity=0.346  Sum_probs=51.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHH
Q 013998           11 ESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSE   87 (432)
Q Consensus        11 ~~esl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsE   87 (432)
                      --++.+.+|..||.+=-.|..+|+++.-  .||+      ++.    .-.+.+|+.|+.++...+.+|..|.-|+..
T Consensus        17 RlAsyIdKVR~LEqqN~~Le~~i~~l~~--~~~~------~~~----~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dn   81 (93)
T 3s4r_A           17 RFANLIDKVRFLEQQNKILLAELEQLKG--QGKS------RLG----DLYEEEMRELRRQVDQLTNDKARVEVERDN   81 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH------HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccCC------CcH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3578889999999999999999999863  3443      222    125888999999999999999998887765

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=88.54  E-value=9  Score=31.31  Aligned_cols=23  Identities=13%  Similarity=0.317  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 013998           14 ALMARIQQLEHERDELRKDIEQL   36 (432)
Q Consensus        14 sl~aRI~qLEhERDELrKDIEqL   36 (432)
                      .+..++..|+++.+.+...++.|
T Consensus         3 ~~~~~~~~l~~~~~~~~~~~~~l   25 (284)
T 1c1g_A            3 AIKKKMQMLKLDKENALDRADEA   25 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHH
Confidence            34555666666666665555554

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=86.20  E-value=3.5  Score=44.82  Aligned_cols=13  Identities=46%  Similarity=0.501  Sum_probs=6.1

Q ss_pred             HHHHHHHHHHHHH
Q 013998           20 QQLEHERDELRKD   32 (432)
Q Consensus        20 ~qLEhERDELrKD   32 (432)
                      ..||..|++.-.+
T Consensus       781 ~~LE~~r~~~l~~  793 (1184)
T 1i84_S          781 AHLEEERDLKITD  793 (1184)
T ss_dssp             HHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHH
Confidence            3455555544333

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=86.19  E-value=13  Score=30.46  Aligned_cols=24  Identities=8%  Similarity=0.202  Sum_probs=12.6

Q ss_pred             hHHHHHHHHHHHHhhHHHHhhhhh
Q 013998          233 YISALEDELEKTRSSVENLQSKLR  256 (432)
Q Consensus       233 yisaLEee~e~lr~si~~LQskLR  256 (432)
                      -+..+++++..++..++.+...++
T Consensus       217 ~~~~~~~~l~~l~~~~~~~~~~~~  240 (284)
T 1c1g_A          217 KEDKYEEEIKVLSDKLKEAETRAE  240 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555555555555543

>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*

Probab=85.17  E-value=8.3  Score=39.25  Aligned_cols=63  Identities=14%  Similarity=0.152  Sum_probs=46.4

Q ss_pred             hhhhHHHHHHHHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHH
Q 013998          230 TSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRL  292 (432)
Q Consensus       230 tskyisaLEee~e~lr~si~~LQskLR~glEIEnHLkk~~r~lEkkq~~~d~~i~Ngis~L~~  292 (432)
                      .+||-..++..++.|++.++.|-++-.-.+++.++|+-.....+++---+...|..--..|.+
T Consensus        91 L~k~q~~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~  153 (464)
T 1m1j_B           91 LLKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMEL  153 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhhhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHH
Confidence            678999999999999999999998888888888888888777766544444333333333333

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=84.97  E-value=4.7  Score=36.48  Aligned_cols=77  Identities=26%  Similarity=0.312  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHH----------HHHhhhhhHHHHHHHHHHHHHhhhhhcchHH
Q 013998           14 ALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRM----------HFQRTAGLEQEIEILKQKIAACARENSNLQE   83 (432)
Q Consensus        14 sl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM----------~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQE   83 (432)
                      -|-.++..|+..|+.|.+|+-+|=-|      |.-=.|.          +--|..+|+.|++.++..+.....||..|+|
T Consensus        52 ELq~~~~~L~~~k~~Leke~~~LQa~------L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~E  125 (168)
T 3o0z_A           52 ELQERNRILENSKSQTDKDYYQLQAI------LEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQD  125 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35578889999999999999776443      2222222          2237889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 013998           84 ELSEAYRIKGQLA   96 (432)
Q Consensus        84 ELsEAYRiK~qLa   96 (432)
                      -++.-=.-|+-+.
T Consensus       126 kl~~lEKe~a~~e  138 (168)
T 3o0z_A          126 MLNHSEKEKNNLE  138 (168)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhh
Confidence            9987655555443

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=84.50  E-value=13  Score=30.85  Aligned_cols=66  Identities=23%  Similarity=0.319  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccchhhhhcccccccccc
Q 013998          146 QKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSF  225 (432)
Q Consensus       146 qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~~~~s~~~Kc~~Ll~ds~~~WSf  225 (432)
                      ..+.++...+..++..+..++..|..|...++..+.+-+.-++-+                                   
T Consensus        36 ~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~-----------------------------------   80 (129)
T 3tnu_B           36 HEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDA-----------------------------------   80 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------
Confidence            457777777788888888888888888877777655444111110                                   


Q ss_pred             cCcchhhhHHHHHHHHHHHHhhHHHH
Q 013998          226 NDTSTSKYISALEDELEKTRSSVENL  251 (432)
Q Consensus       226 n~tStskyisaLEee~e~lr~si~~L  251 (432)
                           -.-|+.||.++..+|..+...
T Consensus        81 -----q~~i~~lE~eL~~~r~e~~~q  101 (129)
T 3tnu_B           81 -----RNKLAELEEALQKAKQDMARL  101 (129)
T ss_dssp             -----HHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHhHHHHHHHHHHH
Confidence                 114788999999999887653

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=84.34  E-value=29  Score=33.52  Aligned_cols=38  Identities=16%  Similarity=0.268  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHHHhh
Q 013998          146 QKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELN  183 (432)
Q Consensus       146 qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~  183 (432)
                      ++..+++.++++......+.++-+..+..++..+++.+
T Consensus       544 ~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~  581 (597)
T 3oja_B          544 QENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKK  581 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            55555566666666666666666666666666665543

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=81.10  E-value=32  Score=31.16  Aligned_cols=124  Identities=15%  Similarity=0.219  Sum_probs=82.2

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccchhh
Q 013998          134 AEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCA  213 (432)
Q Consensus       134 aEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~~~~s~~~Kc~  213 (432)
                      +.|.|...-.++...+.++.-++|++..+.......+.|+.+++.+-.+.+.         +-|.++..- ++       
T Consensus        29 ~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~q---------Er~~r~q~s-e~-------   91 (168)
T 3o0z_A           29 AVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEA---------ERRDRGHDS-EM-------   91 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHH-HH-------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHH-HH-------
Confidence            4466666667788888999999999999999999999999999999887771         111111100 00       


Q ss_pred             hhcccccccccccCcchhhhHHHHHHHHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHH
Q 013998          214 CLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLC  293 (432)
Q Consensus       214 ~Ll~ds~~~WSfn~tStskyisaLEee~e~lr~si~~LQskLR~glEIEnHLkk~~r~lEkkq~~~d~~i~Ngis~L~~~  293 (432)
                        +.           -+---|.+|++|++.++.+..++..-       =.+|+.++..|||..+-++==+.=-|..|+.-
T Consensus        92 --~~-----------elq~ri~~L~~El~~~k~~~~k~~~e-------~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~  151 (168)
T 3o0z_A           92 --IG-----------DLQARITSLQEEVKHLKHNLEKVEGE-------RKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQR  151 (168)
T ss_dssp             --HH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --HH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence              00           00114666777777776666665543       35899999999998887763333445556554


Q ss_pred             H
Q 013998          294 H  294 (432)
Q Consensus       294 h  294 (432)
                      |
T Consensus       152 ~  152 (168)
T 3o0z_A          152 L  152 (168)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=80.54  E-value=24  Score=29.42  Aligned_cols=108  Identities=21%  Similarity=0.296  Sum_probs=63.3

Q ss_pred             hhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHH
Q 013998           56 RTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAE  135 (432)
Q Consensus        56 RtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqVkFfQs~VA~AFAERD~slmEaE  135 (432)
                      -.+.++.+|..|+.++.........|.+.....--=|..|...              +.          +|+++. -++ 
T Consensus        14 E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~q--------------L~----------~E~~~l-~e~-   67 (129)
T 2fxo_A           14 EMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQ--------------VQ----------AEQDNL-ADA-   67 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HH----------HHHHHH-HHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HH----------HHHHHH-HhH-
Confidence            4456788888888887766666555555544433333333322              11          233331 122 


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHH
Q 013998          136 KAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVIN  191 (432)
Q Consensus       136 KaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~e~~~kVi~  191 (432)
                        .++-+.+...-.+++..+.++++.+.+....|..|+..-.++..+...+.+-|+
T Consensus        68 --EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~le  121 (129)
T 2fxo_A           68 --EERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDID  121 (129)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              244445555556677777777777777777777777777777666665555444

>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1

Probab=80.38  E-value=5.7  Score=33.34  Aligned_cols=29  Identities=31%  Similarity=0.487  Sum_probs=26.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013998           11 ESEALMARIQQLEHERDELRKDIEQLCMQ   39 (432)
Q Consensus        11 ~~esl~aRI~qLEhERDELrKDIEqLCMQ   39 (432)
                      ....+..+|..|+.||+.|++.|+.|=|+
T Consensus        13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~   41 (100)
T 1go4_E           13 EADTLRLKVEELEGERSRLEEEKRMLEAQ   41 (100)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47789999999999999999999988774

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=80.27  E-value=15  Score=30.72  Aligned_cols=66  Identities=18%  Similarity=0.219  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccchhhhhcccccccccc
Q 013998          146 QKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSF  225 (432)
Q Consensus       146 qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~~~~s~~~Kc~~Ll~ds~~~WSf  225 (432)
                      ..+.++..++..++..+..++..+..|...++..+.+-+.-++-                                    
T Consensus        38 ~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~------------------------------------   81 (131)
T 3tnu_A           38 SEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQ------------------------------------   81 (131)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH------------------------------------
Confidence            45777777777788888888888888877777665544411110                                    


Q ss_pred             cCcchhhhHHHHHHHHHHHHhhHHHH
Q 013998          226 NDTSTSKYISALEDELEKTRSSVENL  251 (432)
Q Consensus       226 n~tStskyisaLEee~e~lr~si~~L  251 (432)
                          .-.-|+.||.++..+|..+...
T Consensus        82 ----~q~~i~~lE~eL~~~r~em~~q  103 (131)
T 3tnu_A           82 ----IQEMIGSVEEQLAQLRCEMEQQ  103 (131)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHH
Confidence                0114788999999999887653

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=80.01  E-value=19  Score=39.42  Aligned_cols=30  Identities=33%  Similarity=0.493  Sum_probs=1.5

Q ss_pred             hhhHHHHHHHHHHHHHhhhhhcchHHHHHH
Q 013998           58 AGLEQEIEILKQKIAACARENSNLQEELSE   87 (432)
Q Consensus        58 A~LEQeIE~Lkkkl~~c~rEn~nLQEELsE   87 (432)
                      ..||..|+.|+.+|..-..+|..|++++..
T Consensus       924 ~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~  953 (1080)
T 2dfs_A          924 IGLENKIMQLQRKIDEQNKEYKSLLEKMNN  953 (1080)
T ss_dssp             ---------------------------CHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            578888999999999989999999988653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00