Citrus Sinensis ID: 014004


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430--
MMKTTNSISVLSDPPSRSCLCSLFIAAALICSVYFIGSSFVAKENKERLMRWGLVHSMYSAKPETCKNQQCRLPGTEALPEGIVSKTSNLEMRPLWSSPSKLNNQRPPMNLLAIAAGIKQKKIVDQIVRKFPSKDFVVMLFHYDGVVDEWKDLVWADRAIHVSAANQTKWWFAKRFLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDDYSTAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLGLPTLGVTTEPELNTVGQASDDLEQIANPVALAPSQSRRYDNRPEVRSLHCYCICKVLFSAQYKVDSTNFALSMHVHESSYVQILGMFLLKTLFIGPKTVLHRNADLQK
cccccccccccccccccccHHHHHHHHHHHHHHHHccEEEEEEccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccHHHHHHHHHHcccccccEEEEEEEcccccccccccccccEEEEEEcccHHHHHHHHcccccHHccccEEEEEccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccEEEEccccccccccccccccccEEEEEcccccHHHHHHHHHHHccccccccHHHHHHHHcccccccccEEEEEEEEEEEccccccccccccccccccccccHHHHHHccccccccccccccccHHHcccccEEEEccccccccccccccccccccccccHHHHHHHHHHHHHHHccccEEEEccccccc
cccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccEEccccccEcccccccccccccccccEEEEEEEcHHHHHHHHHHHHHccccccEEEEEEEcccccccccccccccEEEEEEccccHHHHHHHcccccHcccccEEEEEccccccccccHHHHHHHHHHccccEcccccccccccEEEEEEEEccccEEEEEEEcccccccccccccccccHHHHHHHcHHccHHHHHHHHHHHHHHHHccccccccccHcccccccccEEEEEcHEEEEcccccccccccccccccccccccHcccccHHHHHHHcccccccccHHHccccEHEEEEEEEcEcccccccEEEEEEccHHHHHHHHHHHHHHHHcccccEEEEccccccc
mmkttnsisvlsdppsrscLCSLFIAAALICSVYFIGSSFVAKENKERLMRWGLVHSmysakpetcknqqcrlpgtealpegivsktsnlemrplwsspsklnnqrppmNLLAIAAGIKQKKIVDQIVRKFPSKDFVVMLFHYDGVVDEWKDLVWADRAIHVSAANQTKWWFakrflhpdivAEYNYIFlwdedigvenfnprrylsivkdegleisqpaldpvksevhhpitarrrnsKAHRRMYkykgsgrcddystappcigwvemMAPVFSRAAWRCAWYMIQNDLIHAWGLdiqlgycaqgdrtknvgvvdseyivhlglptlgvttepelntvgqasddleqianpvalapsqsrrydnrpevrslHCYCICKVLFsaqykvdstnfalsmhvhESSYVQILGMFLLKTlfigpktvlhrnadlqk
mmkttnsisvlsdppsRSCLCSLFIAAALICSVYFIGSSFVAKENKERLMRWGLVHSMYSAKPETCKNQQCRLPGTEALPEGIVSKTSNLEMRPLWSspsklnnqrPPMNLLAIAAGIKQKKIVDQIVRKFPSKDFVVMLFHYDGVVDEWKDLVWADRAIHVSAANQTKWWFAKRFLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEIsqpaldpvksevhhpitarrrnskahrrmykykgsgrcddysTAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLGLPTLGVTTEPELNTVGQASDDLEQIANPvalapsqsrrydnrPEVRSLHCYCICKVLFSAQYKVDSTNFALSMHVHESSYVQILGMFLLKTLFIGPKTVLHRNADLQK
MMKTTNSISVLSDPPSRSCLCSLFIAAALICSVYFIGSSFVAKENKERLMRWGLVHSMYSAKPETCKNQQCRLPGTEALPEGIVSKTSNLEMRPLWSSPSKLNNQRPPMNLLAIAAGIKQKKIVDQIVRKFPSKDFVVMLFHYDGVVDEWKDLVWADRAIHVSAANQTKWWFAKRFLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDDYSTAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLGLPTLGVTTEPELNTVGQASDDLEQIANPVALAPSQSRRYDNRPEVRSLHCYCICKVLFSAQYKVDSTNFALSMHVHESSYVQILGMFLLKTLFIGPKTVLHRNADLQK
*****************SCLCSLFIAAALICSVYFIGSSFVAKENKERLMRWGLVHSMYSAK***********************************************NLLAIAAGIKQKKIVDQIVRKFPSKDFVVMLFHYDGVVDEWKDLVWADRAIHVSAANQTKWWFAKRFLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLE******************************YKYKGSGRCDDYSTAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLGLPTLGVTTEP**********************************VRSLHCYCICKVLFSAQYKVDSTNFALSMHVHESSYVQILGMFLLKTLFIGPKTVLH*******
**********************LFIAAALICSVYFIGSSFVAKENKERLMRWGL****************************IVSKTSNLEM*****************NLLAIAAGIKQKKIVDQIVRKFPSKDFVVMLFHYDGVVDEWKDLVWADRAIHVSAANQTKWWFAKRFLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARR**SKAHRRMYKYKGSGRCDDYSTAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLGL*************************************YDNRPEVRSLHCYCICKVLFSAQYKVDSTNFALSMHVHESSYVQILGMFLLKTLFIGPKTVLHR******
*************PPSRSCLCSLFIAAALICSVYFIGSSFVAKENKERLMRWGLVHSMYSAKPETCKNQQCRLPGTEALPEGIVSKTSNLEMRPLWSSPSKLNNQRPPMNLLAIAAGIKQKKIVDQIVRKFPSKDFVVMLFHYDGVVDEWKDLVWADRAIHVSAANQTKWWFAKRFLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKS*****************RMYKYKGSGRCDDYSTAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLGLPTLGVTTEPELNTVGQASDDLEQIANPVALAPSQSRRYDNRPEVRSLHCYCICKVLFSAQYKVDSTNFALSMHVHESSYVQILGMFLLKTLFIGPKTVLHRNADLQK
**************PSRSCLCSLFIAAALICSVYFIGSSFVAKENKERLMRWGLVHSMY*********QQCRLPGTEALPEGIVSKTSNLEMRPLWSSPSKLNNQRPPMNLLAIAAGIKQKKIVDQIVRKFPSKDFVVMLFHYDGVVDEWKDLVWADRAIHVSAANQTKWWFAKRFLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDDYSTAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLGLPTL***********************************DNRPEVRSLHCYCICKVLFSAQYKVDSTNFALSMHVHESSYVQILGMFLLKTLFIGPKTVLHRN*****
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooo
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MMKTTNSISVLSDPPSRSCLCSLFIAAALICSVYFIGSSFVAKENKERLMRWGLVHSMYSAKPETCKNQQCRLPGTEALPEGIVSKTSNLEMRPLWSSPSKLNNQRPPMNLLAIAAGIKQKKIVDQIVRKFPSKDFVVMLFHYDGVVDEWKDLVWADRAIHVSAANQTKWWFAKRFLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDDYSTAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLGLPTLGVTTEPELNTVGQASDDLEQIANPVALAPSQSRRYDNRPEVRSLHCYCICKVLFSAQYKVDSTNFALSMHVHESSYVQILGMFLLKTLFIGPKTVLHRNADLQK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query432
359486223413 PREDICTED: uncharacterized protein LOC10 0.851 0.891 0.665 1e-145
255575938370 conserved hypothetical protein [Ricinus 0.773 0.902 0.710 1e-142
240255999389 uncharacterized protein [Arabidopsis tha 0.800 0.889 0.648 1e-137
356560121385 PREDICTED: uncharacterized protein LOC10 0.800 0.898 0.66 1e-136
356541848387 PREDICTED: uncharacterized protein LOC10 0.793 0.886 0.667 1e-134
92893672355 Protein of unknown function DUF707 [Medi 0.768 0.935 0.683 1e-134
357445211406 hypothetical protein MTR_2g005330 [Medic 0.789 0.839 0.644 1e-131
357445209368 hypothetical protein MTR_2g005330 [Medic 0.768 0.902 0.658 1e-131
449515369402 PREDICTED: uncharacterized LOC101205845, 0.745 0.800 0.658 1e-128
297735287413 unnamed protein product [Vitis vinifera] 0.844 0.883 0.602 1e-128
>gi|359486223|ref|XP_002265374.2| PREDICTED: uncharacterized protein LOC100255698 [Vitis vinifera] gi|297739491|emb|CBI29673.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  520 bits (1338), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 251/377 (66%), Positives = 291/377 (77%), Gaps = 9/377 (2%)

Query: 2   MKTTNSISVLSDPPSRSCLCSLFIAAALICSVYFIGSSFVAKENKERLMRWGLV------ 55
           MKT + IS+ SDP SRS LCSLFI A L C VYFI S F  K+ K+R  RW +       
Sbjct: 1   MKTLSCISLPSDPKSRSYLCSLFIGACLFCGVYFIASEFTVKDYKDRSSRWQISVFQNAH 60

Query: 56  -HSMYSAKPETCKNQQCRLPGTEALPEGIVSKTSNLEMRPLWSSPSKLNNQRPPMNLLAI 114
            +S+ + +   CKNQ CR  G+EALPEGIV KTSNLE++PLW +        P  +LLA+
Sbjct: 61  SNSIQNTQSSKCKNQ-CRPSGSEALPEGIVVKTSNLEVQPLWGATLNGEKSSPSKSLLAM 119

Query: 115 AAGIKQKKIVDQIVRKFPSKDFVVMLFHYDGVVDEWKDLVWADRAIHVSAANQTKWWFAK 174
           A GIKQK+IV+QIV KF   +FVVMLFHYDGVVDEW++  W+D AIHV+  NQTKWWFAK
Sbjct: 120 AVGIKQKEIVNQIVEKFILSNFVVMLFHYDGVVDEWREFAWSDHAIHVTVVNQTKWWFAK 179

Query: 175 RFLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITA 234
           RFLHPDIVAEYNYIFLWDED+GVENF+P RY+SIV+DEGLEISQPALDP KS VHH ITA
Sbjct: 180 RFLHPDIVAEYNYIFLWDEDLGVENFHPGRYVSIVEDEGLEISQPALDPKKSRVHHQITA 239

Query: 235 RRRNSKAHRRMYKYKGSGRCDDYSTAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAW 294
           R RNS+ HRR YK++GSGRCDD STAPPC+GWVEMMAPVFS+AAWRC W+MIQN+LIHAW
Sbjct: 240 RVRNSRVHRRTYKHRGSGRCDDQSTAPPCVGWVEMMAPVFSKAAWRCVWHMIQNELIHAW 299

Query: 295 GLDIQLGYCAQGDRTKNVGVVDSEYIVHLGLPTLGVTTEPELNTVGQASDDL-EQIANPV 353
           G+D+QLGYCAQGDRTKNVGVVDSEY+VHL LPTLGV  E EL   G     L E++   V
Sbjct: 300 GVDMQLGYCAQGDRTKNVGVVDSEYVVHLALPTLGVLDENELRGEGHDHSSLREKLPKSV 359

Query: 354 ALAPSQSRRYDNRPEVR 370
           ALA S+  + DNR  VR
Sbjct: 360 ALAQSEFHKVDNRSAVR 376




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575938|ref|XP_002528866.1| conserved hypothetical protein [Ricinus communis] gi|223531717|gb|EEF33540.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|240255999|ref|NP_193588.5| uncharacterized protein [Arabidopsis thaliana] gi|332658658|gb|AEE84058.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356560121|ref|XP_003548344.1| PREDICTED: uncharacterized protein LOC100797710 [Glycine max] Back     alignment and taxonomy information
>gi|356541848|ref|XP_003539384.1| PREDICTED: uncharacterized protein LOC100526994 [Glycine max] Back     alignment and taxonomy information
>gi|92893672|gb|ABE91850.1| Protein of unknown function DUF707 [Medicago truncatula] gi|92893916|gb|ABE91966.1| Protein of unknown function DUF707 [Medicago truncatula] Back     alignment and taxonomy information
>gi|357445211|ref|XP_003592883.1| hypothetical protein MTR_2g005330 [Medicago truncatula] gi|355481931|gb|AES63134.1| hypothetical protein MTR_2g005330 [Medicago truncatula] Back     alignment and taxonomy information
>gi|357445209|ref|XP_003592882.1| hypothetical protein MTR_2g005330 [Medicago truncatula] gi|355481930|gb|AES63133.1| hypothetical protein MTR_2g005330 [Medicago truncatula] Back     alignment and taxonomy information
>gi|449515369|ref|XP_004164722.1| PREDICTED: uncharacterized LOC101205845, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|297735287|emb|CBI17649.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query432
TAIR|locus:2124608389 AT4G18530 "AT4G18530" [Arabido 0.800 0.889 0.648 1.6e-127
TAIR|locus:2202124438 AT1G11170 [Arabidopsis thalian 0.594 0.586 0.606 1.1e-87
TAIR|locus:2008425425 AT1G61240 [Arabidopsis thalian 0.599 0.609 0.593 3.3e-86
TAIR|locus:2031905401 AT1G13000 [Arabidopsis thalian 0.599 0.645 0.496 5.6e-68
TAIR|locus:2086721398 AT3G27470 "AT3G27470" [Arabido 0.583 0.633 0.494 2.4e-67
TAIR|locus:2205140382 AT1G08040 [Arabidopsis thalian 0.587 0.664 0.486 3.6e-66
TAIR|locus:2057557374 AT2G28310 "AT2G28310" [Arabido 0.574 0.663 0.482 5.2e-65
TAIR|locus:2008640404 AT1G67850 "AT1G67850" [Arabido 0.574 0.613 0.490 6.7e-65
TAIR|locus:2079291396 AT3G26440 [Arabidopsis thalian 0.576 0.628 0.490 1.4e-64
TAIR|locus:504956279381 AT1G24570 [Arabidopsis thalian 0.571 0.648 0.484 2.3e-64
TAIR|locus:2124608 AT4G18530 "AT4G18530" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1252 (445.8 bits), Expect = 1.6e-127, P = 1.6e-127
 Identities = 236/364 (64%), Positives = 281/364 (77%)

Query:    16 SRSCLCSLFIAAALICSVYFIGSSFVAKENKERLMRWGLVHSMYSAKPE--------TCK 67
             +RSCLCS+ I  ALIC  YFI ++++AK+ KE+L++W +   M+++  +        TCK
Sbjct:     7 NRSCLCSVLITTALICGAYFICNAYLAKDFKEKLLKWEITDKMHNSTDKMQNATTTSTCK 66

Query:    68 NQQCRLPGTEALPEGIVSKTSNLEMRPLWS-SPSKLNNQRPPMNLLAIAAGIKQKKIVDQ 126
             N   +  GTEALP+GI+ KTSNLE + LW+   +K       M+LLA+A GIKQK++V++
Sbjct:    67 NFN-KPVGTEALPQGIIEKTSNLETQHLWNYDDTKKRRPNHSMSLLAMAVGIKQKELVNK 125

Query:   127 IVRKFPSKDFVVMLFHYDGVVDEWKDLVWADRAIHVSAANQTKWWFAKRFLHPDIVAEYN 186
             +++KFP +DF VMLFHYDGVVD+WK   W + AIHVS  NQTKWWFAKRFLHPDIVAEY 
Sbjct:   126 VIQKFPPRDFAVMLFHYDGVVDDWKQYPWNNHAIHVSVMNQTKWWFAKRFLHPDIVAEYE 185

Query:   187 YIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKAHRRMY 246
             YIFLWDED+GV +FNP+RYLSIVK+EGLEISQPALD  KSEVHHPITARR+ SK HRRMY
Sbjct:   186 YIFLWDEDLGVGHFNPQRYLSIVKEEGLEISQPALDTSKSEVHHPITARRKKSKVHRRMY 245

Query:   247 KYKGSGRCDDYSTAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQG 306
             KYKGSGRCDD+ST PPCIGWVEMMAPVFSRAAWRC+WYMIQNDLIHAWGLD QLGYCAQG
Sbjct:   246 KYKGSGRCDDHSTNPPCIGWVEMMAPVFSRAAWRCSWYMIQNDLIHAWGLDTQLGYCAQG 305

Query:   307 DRTKNVGVVDSEYIVHLGLPTLGVTTEPELNTVGQASDDLEQIANPVALAPSQSRRYDNR 366
             DR KNVGVVD+EYI+H GLPTLGV        V  AS  L    +  +    +SR  DNR
Sbjct:   306 DRKKNVGVVDAEYIIHYGLPTLGV--------VETASSALRNETDSKSTESLESREVDNR 357

Query:   367 PEVR 370
             PEVR
Sbjct:   358 PEVR 361




GO:0008150 "biological_process" evidence=ND
GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISM
TAIR|locus:2202124 AT1G11170 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008425 AT1G61240 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031905 AT1G13000 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086721 AT3G27470 "AT3G27470" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2205140 AT1G08040 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057557 AT2G28310 "AT2G28310" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008640 AT1G67850 "AT1G67850" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2079291 AT3G26440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504956279 AT1G24570 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
GSVIVG00035311001
SubName- Full=Chromosome undetermined scaffold_77, whole genome shotgun sequence; (411 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query432
pfam05212294 pfam05212, DUF707, Protein of unknown function (DU 1e-137
COG5096 757 COG5096, COG5096, Vesicle coat complex, various su 0.004
>gnl|CDD|218501 pfam05212, DUF707, Protein of unknown function (DUF707) Back     alignment and domain information
 Score =  395 bits (1016), Expect = e-137
 Identities = 137/266 (51%), Positives = 170/266 (63%), Gaps = 6/266 (2%)

Query: 70  QCRLPGTEALPEGIVSKTSNLEMRPLWSSPSKLNNQRPPMNLLAIAAGIKQKKIVDQIVR 129
                G E LP GIV   S+  +R LW SP + +    P  LLA   G  QK  VD  V+
Sbjct: 4   PTNPRGAERLPPGIVVSESDFYLRRLWGSPEE-DVASKPKYLLAFTVGYSQKANVDACVK 62

Query: 130 KFPSKDFVVMLFHYDGVVDEWKDLVWADRAIHVSAANQTKWWFAKRFLHPDIVAEYNYIF 189
           KF S +F ++LFHYDG   EW +L W+ +AIHVSA  QTKWWFAKRFLHPDIVA Y YIF
Sbjct: 63  KF-SDNFTIVLFHYDGRTTEWDELEWSKKAIHVSAKKQTKWWFAKRFLHPDIVAPYEYIF 121

Query: 190 LWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYK 249
           LWDED+GV+NF+   Y+ IVK  GLEISQP LDP + ++   IT RR + + H+   +  
Sbjct: 122 LWDEDLGVDNFDAEEYIKIVKKHGLEISQPGLDPDRGQITWRITKRRGDGEVHKDTREKG 181

Query: 250 GSGRCDDYSTAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRT 309
                   ST PPC G+VE+MAPVFSR AWRC W+MIQNDL+H WGLD  L  C      
Sbjct: 182 RCCD---NSTGPPCTGFVEIMAPVFSRDAWRCVWHMIQNDLVHGWGLDFALRRCV-EPAH 237

Query: 310 KNVGVVDSEYIVHLGLPTLGVTTEPE 335
           + +GVVDS+++VH G+P+LG     E
Sbjct: 238 EKIGVVDSQWVVHQGIPSLGSQGTAE 263


This family consists of several uncharacterized proteins from Arabidopsis thaliana. Length = 294

>gnl|CDD|227427 COG5096, COG5096, Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 432
PF05212294 DUF707: Protein of unknown function (DUF707); Inte 100.0
cd04185202 GT_2_like_b Subfamily of Glycosyltransferase Famil 94.28
cd04186166 GT_2_like_c Subfamily of Glycosyltransferase Famil 93.77
TIGR01556281 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids 93.66
cd02510299 pp-GalNAc-T pp-GalNAc-T initiates the formation of 91.68
cd02526237 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl tr 89.0
cd02525249 Succinoglycan_BP_ExoA ExoA is involved in the bios 87.01
cd02520196 Glucosylceramide_synthase Glucosylceramide synthas 84.7
PF13641228 Glyco_tranf_2_3: Glycosyltransferase like family 2 81.55
cd06421234 CESA_CelA_like CESA_CelA_like are involved in the 80.25
>PF05212 DUF707: Protein of unknown function (DUF707); InterPro: IPR007877 This family consists of uncharacterised proteins from Arabidopsis thaliana Back     alignment and domain information
Probab=100.00  E-value=1.4e-121  Score=890.87  Aligned_cols=278  Identities=63%  Similarity=1.121  Sum_probs=268.1

Q ss_pred             cCCCCCCCCCCCCccccCCCcceecCCCCCCCCCCCCCCCcEEEEEeccccccchhHHhhcCCCCCcEEEEEEecCccCc
Q 014004           70 QCRLPGTEALPEGIVSKTSNLEMRPLWSSPSKLNNQRPPMNLLAIAAGIKQKKIVDQIVRKFPSKDFVVMLFHYDGVVDE  149 (432)
Q Consensus        70 q~~p~g~e~LP~gIv~~~Sdl~lr~Lwg~p~~~~~~~~~k~Lla~~VG~kqk~~Vd~~VkKf~~~nFdvmLFHYDG~vd~  149 (432)
                      ||+|+|+|+||+|||+++||||||||||.|+++. +.++|||||||||+|||++||++|+|| ++|||||||||||+||+
T Consensus         4 ~~~p~g~e~Lp~giv~~~sd~~~r~lw~~p~~~~-~~~~k~Lla~~VG~kqk~~vd~~v~Kf-~~nF~i~LfhYDg~vd~   81 (294)
T PF05212_consen    4 PCNPRGAERLPPGIVVRESDLELRPLWGNPSEDL-PKKPKYLLAMTVGIKQKDNVDAIVKKF-SDNFDIMLFHYDGRVDE   81 (294)
T ss_pred             CCCCCccccCCCCccccCCCceeeecCCCccccc-cCCCceEEEEEecHHHHhhhhHHHhhh-ccCceEEEEEecCCcCc
Confidence            8999999999999999999999999999999885 668899999999999999999999999 89999999999999999


Q ss_pred             cccccccCceeEEEeecccchhhhccccCccccccccEEEEecccccCCCCCHHHHHHHHHHhCCcccCCCCCCCCCccc
Q 014004          150 WKDLVWADRAIHVSAANQTKWWFAKRFLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVH  229 (432)
Q Consensus       150 W~d~eWs~~aiHVsa~kQtKWwfaKRFLHPDiVa~YDYIFLwDDDL~Vd~f~i~ryf~Ivr~~gLeISQPALd~~s~~is  229 (432)
                      |+|||||++||||++.|||||||||||||||+|++|||||||||||+||+|+|+|||+||++|||||||||||++++++|
T Consensus        82 w~~~~ws~~aiHv~~~kqtKww~akrfLHPdiv~~YdYiflwDeDL~vd~f~~~ry~~Ivk~~gLeISQPALd~~~~~~~  161 (294)
T PF05212_consen   82 WDDFEWSDRAIHVSARKQTKWWFAKRFLHPDIVAPYDYIFLWDEDLGVDHFDINRYFEIVKKEGLEISQPALDPDSSEIH  161 (294)
T ss_pred             hhhcccccceEEEEeccceEEeehhhhcChhhhccceeEEecCCccCcCcCCHHHHHHHHHHhCCcccCcccCCCCceee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998999


Q ss_pred             ccccccccCcccceeeecccCCCCCCCCCCCCCccceEEeecccccHHHHHHhhhhhcCCCcccchhhhhhhhhhcCCCC
Q 014004          230 HPITARRRNSKAHRRMYKYKGSGRCDDYSTAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRT  309 (432)
Q Consensus       230 H~iT~R~~~~~vHrr~~~~~g~~~C~~~~~~ppcTgFVEiMAPVFSR~AwrCvwhmiQNDLvhGWGLDf~w~~caqg~~~  309 (432)
                      |+||+|++.++|||.   .++.+.|.+++++||||||||||||||||+|||||||||||||+|||||||+|+||+ ++++
T Consensus       162 ~~iT~R~~~~~vhr~---~~~~~~~~~~~~~ppct~fVEiMAPVFSr~Awrcvw~miqNDLvhGWGLDf~~~~c~-~~~~  237 (294)
T PF05212_consen  162 HPITKRRPDSEVHRK---TRGGPRCCDDSTGPPCTGFVEIMAPVFSRAAWRCVWHMIQNDLVHGWGLDFKWGYCA-GDRH  237 (294)
T ss_pred             eeEEeecCCceeEec---cCCCCCcCCCCCCCCcceEEEEecceechHHHHHHHhcccCCCccccchhhhHHHHh-cccc
Confidence            999999999999984   577788888999999999999999999999999999999999999999999999999 6899


Q ss_pred             CcEEEEeeeeEEEeccccCCCCCCcccc-----cccccchhHHHhcCcC
Q 014004          310 KNVGVVDSEYIVHLGLPTLGVTTEPELN-----TVGQASDDLEQIANPV  353 (432)
Q Consensus       310 ~kIGVVDa~~VvH~g~PtLGg~g~~~~~-----~~~~~s~~~~~~~~~~  353 (432)
                      +||||||||||+|+|+|||||||.+++.     .||++|+.|+++|+-+
T Consensus       238 ~kiGVVDs~~VvH~gvptLG~~~~~~~~~~~~~~Vr~r~~~E~~~F~~R  286 (294)
T PF05212_consen  238 KKIGVVDSQYVVHTGVPTLGGQGNSEKGKDPREEVRRRSFAEMRIFQKR  286 (294)
T ss_pred             ccEEEEeeEEEEEcCCCcCCCccccccCCchHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999887554     6999999999999865



>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function Back     alignment and domain information
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function Back     alignment and domain information
>TIGR01556 rhamnosyltran L-rhamnosyltransferase Back     alignment and domain information
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans Back     alignment and domain information
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase Back     alignment and domain information
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan Back     alignment and domain information
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis Back     alignment and domain information
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A Back     alignment and domain information
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query432
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 44.5 bits (104), Expect = 6e-05
 Identities = 40/284 (14%), Positives = 77/284 (27%), Gaps = 87/284 (30%)

Query: 12  SDPPSRSCLCSLFIAAALICSVYFIGSSFVAKENKERLMRWGLVHSMYSAKPETCKNQQC 71
            D P      +         S+  I  S   ++       W   H          ++   
Sbjct: 316 QDLPREVLTTNP-----RRLSI--IAESI--RDGLATWDNW--KHVNCDKLTTIIESSLN 364

Query: 72  RLPGTEA---------LPEG--IVSKTSNLEMRPLWSSPSK--------------LNNQR 106
            L   E           P    I +    L +  +W    K              L  ++
Sbjct: 365 VLEPAEYRKMFDRLSVFPPSAHIPTIL--LSL--IWFDVIKSDVMVVVNKLHKYSLVEKQ 420

Query: 107 PPMNLLAI----------AAGIKQ--KKIVDQ--IVRKFPSKDFVVM-----LFHYDG-- 145
           P  + ++I                  + IVD   I + F S D +        + + G  
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH 480

Query: 146 -----VVDEWK-------DLVWADRAI-HVSAANQTKWWFAKRFLHPDI--VAEY-NYIF 189
                  +          D  + ++ I H S A     W A   +   +  +  Y  YI 
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTA-----WNASGSILNTLQQLKFYKPYIC 535

Query: 190 LWDED-----IGVENFNPRRYLSIVKDEGLEISQPALDPVKSEV 228
             D         + +F P+   +++  +  ++ + AL      +
Sbjct: 536 DNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAI 579


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query432
1qg8_A255 Protein (spore coat polysaccharide biosynthesis P 84.16
1xhb_A 472 Polypeptide N-acetylgalactosaminyltransferase 1; g 82.61
2z86_A 625 Chondroitin synthase; GT-A, glycosyltransferase A, 80.7
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A* Back     alignment and structure
Probab=84.16  E-value=1.9  Score=37.58  Aligned_cols=119  Identities=8%  Similarity=-0.073  Sum_probs=67.8

Q ss_pred             ccccEEEEecccccCCCCCHHHHHHHHHHh-CCcccCCCC-----CCCCCcccccccccccCcccceeeecccCCCCCCC
Q 014004          183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDE-GLEISQPAL-----DPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDD  256 (432)
Q Consensus       183 a~YDYIFLwDDDL~Vd~f~i~ryf~Ivr~~-gLeISQPAL-----d~~s~~isH~iT~R~~~~~vHrr~~~~~g~~~C~~  256 (432)
                      +..|||++.|+|..++...++++++.+++. +..+..+..     +.+ +...+.. . .+...+.          .   
T Consensus        87 a~g~~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~-~-~~~~~~~----------~---  150 (255)
T 1qg8_A           87 AEGEYITYATDDNIYMPDRLLKMVRELDTHPEKAVIYSASKTYHLNEN-RDIVKET-V-RPAAQVT----------W---  150 (255)
T ss_dssp             CCCSEEEEEETTEEECTTHHHHHHHHHHHCTTCCEEEEEEEEEEEC----CEEEEE-E-ECCCSCB----------S---
T ss_pred             cCCCEEEEeCCCCccChHHHHHHHHHHHhCCCceEEEeceEEEEeCCC-Ccchhhc-c-CchHHHH----------H---
Confidence            688999999999999998899999999876 666665543     221 1111110 0 0000000          0   


Q ss_pred             CCCCCCccceEEeecccccHHHHHHhh-hh--hcC-CCcccchhhhhhhhhhcCCCCCcEEEEeeeeEEEec
Q 014004          257 YSTAPPCIGWVEMMAPVFSRAAWRCAW-YM--IQN-DLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLG  324 (432)
Q Consensus       257 ~~~~ppcTgFVEiMAPVFSR~AwrCvw-hm--iQN-DLvhGWGLDf~w~~caqg~~~~kIGVVDa~~VvH~g  324 (432)
                           ....++-..+=+|+|++++.+- .+  ..+ +.....+-|+.+...+.. .+ ++..++...+.|+.
T Consensus       151 -----~~~~~~~~~~~~~rr~~~~~~g~~f~~~~~~~~~~~~~eD~~~~~r~~~-~g-~~~~~~~~~~~~r~  215 (255)
T 1qg8_A          151 -----NAPCAIDHCSVMHRYSVLEKVKEKFGSYWDESPAFYRIGDARFFWRVNH-FY-PFYPLDEELDLNYI  215 (255)
T ss_dssp             -----CCTTTSCGGGEEEETHHHHHHHHHHSSSSCCCGGGSTTHHHHHHHHHTT-TC-CBEEEEEEEEEEEE
T ss_pred             -----hhcCCCccceEEEEHHHHHhhcccccccccCCcccchHHHHHHHHHHHH-hC-CEEEecCcEEEEEE
Confidence                 0111222234578999998763 11  011 222335567776544432 23 69999998888873



>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17 Back     alignment and structure
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query432
d1xhba2328 Polypeptide N-acetylgalactosaminyltransferase 1, N 84.87
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain
domain: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.87  E-value=0.55  Score=40.99  Aligned_cols=143  Identities=14%  Similarity=0.069  Sum_probs=74.9

Q ss_pred             cccccEEEEecccccCCCCCHHHHHHHHHHhCCcccCCCCCCCCCc-cc----ccccccccCcccce--eeecccCCCCC
Q 014004          182 VAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSE-VH----HPITARRRNSKAHR--RMYKYKGSGRC  254 (432)
Q Consensus       182 Va~YDYIFLwDDDL~Vd~f~i~ryf~Ivr~~gLeISQPALd~~s~~-is----H~iT~R~~~~~vHr--r~~~~~g~~~C  254 (432)
                      .+.-|||++.|+|..++.-.++++++.+.+..-.+..|.++.-... ..    ...+.-.-....+.  ..+........
T Consensus       105 ~a~gd~i~flD~D~~~~p~~l~~l~~~~~~~~~~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (328)
T d1xhba2         105 VSRGQVITFLDAHCECTAGWLEPLLARIKHDRRTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQREMDRR  184 (328)
T ss_dssp             HCCSSEEEEEESSEEECTTCHHHHHHHHHHCTTEEEEEEEEEECSSSCCEECCCTTEEEEECTTCCEEEEECCHHHHHHT
T ss_pred             hhhcceeeecCcccccChhHHHHHHHHHhcCCCeEEecceeeeccCceeeccCCccccccccccccccccccchhhhhcc
Confidence            4778999999999999999999999999998877777765321100 00    00000000000000  00000000000


Q ss_pred             CCCCCCCCccceEEeecccccHHHHHHhhhhhcCCCcccch---hhhhhhhhhcCCCCCcEEEEeeeeEEEeccccCC
Q 014004          255 DDYSTAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWG---LDIQLGYCAQGDRTKNVGVVDSEYIVHLGLPTLG  329 (432)
Q Consensus       255 ~~~~~~ppcTgFVEiMAPVFSR~AwrCvwhmiQNDLvhGWG---LDf~w~~caqg~~~~kIGVVDa~~VvH~g~PtLG  329 (432)
                      ....+.|..+.++..-+=.++|++|..+=  -++.....||   +|+-+.-...   +.+|..+-...|.|..+-..+
T Consensus       185 ~~~~~~~~~~~~~~g~~~~irr~~f~~vG--gfDe~~~~~g~ED~Dl~~R~~~~---G~~i~~~p~~~v~H~~~~~~~  257 (328)
T d1xhba2         185 KGDRTLPVRTPTMAGGLFSIDRDYFQEIG--TYDAGMDIWGGENLEISFRIWQC---GGTLEIVTCSHVGHVFRKATP  257 (328)
T ss_dssp             TTCTTSCEECSBCCSSSEEEEHHHHHHTT--SCCTTSCTTCCCCSHHHHHHHHT---TCEEEEEEEEEEEEEC-----
T ss_pred             ccccccccccceecceeeeeeHHHHHHhC--CCCCCCcCcCchHHHHHHHHHHh---CCeEEEeCCeEEEEeCCCCCC
Confidence            11112222223333222346899999873  2456566675   4555544433   468999988889997554443