Citrus Sinensis ID: 014031

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430--
MVGDGHVEKRSKDKKKKKKQKRGGGKKKMTAEQSLAFNSVTEWVYLDQSHSSSSSEDDFGVHQILNRAVDNNVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLKLGGSDYHGRGGHGESELGSVKLPVLVLNDFLKVARPIWCGAIKEILESYADEPSDSNLSHITRYGRGKMLKRNYPLNCGKGLVDECLSLWLTNEERQSAEFEAIKLKLSHVSINQG
cccccccccccccHHHHHccccccccccccHHHHHHHccccHHHccccccccccccccccccccccccccccEEEEcccccccccccccHHHHHHHHHHccccEEEEccccccccHHHHHHHHHHcccEEEEEEEEEEEEccccccccccEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcccccccHHHHHHHHHHccccccHHHHHHHHHccccccccccccccHHHHHHHHHHcccEEEEEccccccccHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHccEEcccccccccccccccccccccccHHHHHHHHHccccccccHHHHHHHHccccccccccccHHcccccccccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccc
cccccccEEccccHHcccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccEEEEEccccccccccccHHHHHHHHHHcccEEEEEEcccccccHHHHHHHHHHcccEEEcEEEEEEEEEccccccccEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccHHHHHHHHHHccccccHHHHHHHHHHcccccccccccccHHHHHHHHHHcccEEEEEccccccccHHHHHHHHHccccEEEEEccHHHHHHHHHHHHHcccccccccccccccccccEEcccccccccccccccccccccHHHHHHHHHHHHHcccccccHHHEEEcccccHccccccccccccHHHHHHHHHccccccccccEHEEEEEHHccEEccc
mvgdghvekrskdkkkkkkqkrgggkkkmtAEQSLAFNSVTEWVYLdqshssssseddfgvhQILNRAVDNNVVFElhshsnfsdgylspsklverahcngvkvlaltdhdtmsgiPEAIETARRFGmkiipgveISTIFCqrgseseepvHILAYysscgpskyEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIagkgvapgRLHVARAMVEAGHVENLKQAFARYLydggpaystgsepLAEVAVQLIHRTGglavlahpwalknpAAIIRKLKDVGlhglevyrsdgklvaytDLADTYgllklggsdyhgrgghgeselgsvklpvlvLNDFLKVARPIWCGAIKEILEsyadepsdsnlshitrygrgkmlkrnyplncgkglVDECLSLWLTNEERQSAEFEAIKLKLSHVSINQG
mvgdghvekrskdkkkkkkqkrgggkkkmtaeqsLAFNSVTEWVYLDQSHSSSSSEDDFGVHQILNRAVDNNVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVlaltdhdtmsgIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLKLGGSDYHGRGGHGESELGSVKLPVLVLNDFLKVARPIWCGAIKEILesyadepsdsnlSHITRYGRGKMLKRNYPLNCGKGLVDECLSLWLTNEERQSAEFEAIKLKLSHVSINQG
MVGDGHVEkrskdkkkkkkqkrgggkkkMTAEQSLAFNSVTEWVYLDQshsssssEDDFGVHQILNRAVDNNVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMIlklnklklplkWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLKLggsdyhgrgghgESELGSVKLPVLVLNDFLKVARPIWCGAIKEILESYADEPSDSNLSHITRYGRGKMLKRNYPLNCGKGLVDECLSLWLTNEERQSAEFEAIKLKLSHVSINQG
************************************FNSVTEWVYL************FGVHQILNRAVDNNVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLKLGGSDYHGRGGHGESELGSVKLPVLVLNDFLKVARPIWCGAIKEILESYA*******LSHITRYGRGKMLKRNYPLNCGKGLVDECLSLWLTNE******FEAIK***********
*************************************************************************VFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLKLGGSDYHGRGGHGESELGSVKLPVLVLNDFLKVARPIWCGAIKEILESYADEPS**NLSHITRYGRGKMLKRNYPLNCGKGLVDECLSLWLTNEER*SAEFEAIKLKLSHVSIN**
******************************AEQSLAFNSVTEWVYL************FGVHQILNRAVDNNVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLKLGGSDYHGRGGHGESELGSVKLPVLVLNDFLKVARPIWCGAIKEILESYADEPSDSNLSHITRYGRGKMLKRNYPLNCGKGLVDECLSLWLTNEERQSAEFEAIKLKLSHVSINQG
*********************************SLAFNSVTEWVYLD*********************VDNNVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLKLGGSDYHGRGGHGESELGSVKLPVLVLNDFLKVARPIWCGAIKEILESYADEPSDSNLSHITRYGRGKMLKRNYPLNCGKGLVDECLSLWLTNEERQSAEFEAIKLKLSHVSIN**
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MVGDGHVEKRSKDKKKKKKQKRGGGKKKMTAEQSLAFNSVTEWVYLDQSHSSSSSEDDFGVHQILNRAVDNNVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLKLGGSDYHGRGGHGESELGSVKLPVLVLNDFLKVARPIWCGAIKEILESYADEPSDSNLSHITRYGRGKMLKRNYPLNCGKGLVDECLSLWLTNEERQSAEFEAIKLKLSHVSINQG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query432 2.2.26 [Sep-21-2011]
P44176274 Protein TrpH OS=Haemophil yes no 0.550 0.868 0.351 2e-27
O54453293 Protein TrpH OS=Salmonell yes no 0.564 0.832 0.347 3e-26
P77766293 Protein TrpH OS=Escherich N/A no 0.562 0.829 0.338 7e-24
Q8EQU6 1428 DNA polymerase III PolC-t no no 0.182 0.055 0.358 5e-06
Q73U92 1093 Error-prone DNA polymeras N/A no 0.243 0.096 0.351 5e-06
Q7TWL9 1091 Error-prone DNA polymeras yes no 0.259 0.102 0.352 7e-06
O50399 1098 Error-prone DNA polymeras yes no 0.259 0.102 0.352 7e-06
Q895K2 1427 DNA polymerase III PolC-t yes no 0.138 0.042 0.451 9e-06
Q6A780 1134 Error-prone DNA polymeras no no 0.224 0.085 0.368 1e-05
Q5Z1D1 1146 Error-prone DNA polymeras no no 0.164 0.061 0.413 2e-05
>sp|P44176|TRPH_HAEIN Protein TrpH OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=trpH PE=3 SV=1 Back     alignment and function desciption
 Score =  124 bits (311), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/256 (35%), Positives = 127/256 (49%), Gaps = 18/256 (7%)

Query: 75  FELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGV 134
           ++LH HS  SDG LSP++LV RA+  GV VLAL DHDT++GI EA   A+  G+++I GV
Sbjct: 5   YDLHCHSTASDGVLSPTELVHRAYAQGVNVLALCDHDTIAGIDEAEIAAKEVGIELITGV 64

Query: 135 EISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLK 194
           EIST +  RG      +HI+         K   L      +R+ R +   D   KL K  
Sbjct: 65  EISTNWEGRG------IHIVGLNFDKTHPKMTALLQSQKALREKRAVEIGD---KLEKAG 115

Query: 195 LPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAE 254
           +P  ++    +A   V   R H AR +V+ G V N  QAF RYL  G  A+         
Sbjct: 116 IPNAYDGAKALADGEVT--RAHYARYLVQIGKVSNDGQAFKRYLGQGKSAFVKAEWADIP 173

Query: 255 VAVQLIHRTGGLAVLAHPWALKNPAAIIRKL----KDVGLHGLEVY---RSDGKLVAYTD 307
            A++ IH  GG+A++AHP         +RKL    K  G  G+E+    ++  +      
Sbjct: 174 TAIETIHAAGGIAIIAHPLRYNMTGKWVRKLIVDFKAWGGDGMEMADCGQTKDQRQMLAR 233

Query: 308 LADTYGLLKLGGSDYH 323
            A  + L    GSD+H
Sbjct: 234 WAKEFDLQGSVGSDFH 249

Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421)
>sp|O54453|TRPH_SALTY Protein TrpH OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=trpH PE=3 SV=3 Back     alignment and function description
>sp|P77766|TRPH_ECOLI Protein TrpH OS=Escherichia coli (strain K12) GN=trpH PE=3 SV=1 Back     alignment and function description
>sp|Q8EQU6|DPO3_OCEIH DNA polymerase III PolC-type OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 / HTE831) GN=polC PE=3 SV=1 Back     alignment and function description
>sp|Q73U92|DNAE2_MYCPA Error-prone DNA polymerase OS=Mycobacterium paratuberculosis (strain ATCC BAA-968 / K-10) GN=dnaE2 PE=3 SV=1 Back     alignment and function description
>sp|Q7TWL9|DNAE2_MYCBO Error-prone DNA polymerase OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=dnaE2 PE=3 SV=2 Back     alignment and function description
>sp|O50399|DNAE2_MYCTU Error-prone DNA polymerase OS=Mycobacterium tuberculosis GN=dnaE2 PE=2 SV=4 Back     alignment and function description
>sp|Q895K2|DPO3_CLOTE DNA polymerase III PolC-type OS=Clostridium tetani (strain Massachusetts / E88) GN=polC PE=3 SV=1 Back     alignment and function description
>sp|Q6A780|DNAE2_PROAC Error-prone DNA polymerase OS=Propionibacterium acnes (strain KPA171202 / DSM 16379) GN=dnaE2 PE=3 SV=1 Back     alignment and function description
>sp|Q5Z1D1|DNAE2_NOCFA Error-prone DNA polymerase OS=Nocardia farcinica (strain IFM 10152) GN=dnaE2 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query432
449438183443 PREDICTED: protein TrpH-like [Cucumis sa 0.930 0.907 0.738 1e-174
224059026408 predicted protein [Populus trichocarpa] 0.930 0.985 0.757 1e-172
356524846458 PREDICTED: protein trpH-like [Glycine ma 0.949 0.895 0.727 1e-170
356512073455 PREDICTED: protein trpH-like [Glycine ma 0.923 0.876 0.726 1e-162
297836026434 PHP domain-containing protein [Arabidops 0.939 0.935 0.671 1e-160
18397349434 Polymerase/histidinol phosphatase-like p 0.935 0.930 0.665 1e-158
15450377433 At2g13860/F13J11.19 [Arabidopsis thalian 0.935 0.933 0.665 1e-158
359485749341 PREDICTED: protein trpH-like [Vitis vini 0.761 0.964 0.790 1e-145
296085663325 unnamed protein product [Vitis vinifera] 0.736 0.978 0.783 1e-139
326497631426 predicted protein [Hordeum vulgare subsp 0.949 0.962 0.552 1e-131
>gi|449438183|ref|XP_004136869.1| PREDICTED: protein TrpH-like [Cucumis sativus] gi|449478899|ref|XP_004155448.1| PREDICTED: protein TrpH-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  618 bits (1593), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 302/409 (73%), Positives = 349/409 (85%), Gaps = 7/409 (1%)

Query: 29  MTAEQSLAFNSVTEWVYLDQSHSSSSSE-----DDFGVHQILNRAVDNNVVFELHSHSNF 83
           MT+EQ  AF  VTEW YLDQS+S +SS      DDFGV + + +     VVFELHSHS  
Sbjct: 31  MTSEQIAAFKYVTEWAYLDQSNSLASSAAASVVDDFGVQKTVGKG-GEKVVFELHSHSKC 89

Query: 84  SDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQR 143
           SDG+L+PSKLVERAH NGVKVLALTDHDTMSGIPEA+E ARRFG+KIIPGVEISTIF   
Sbjct: 90  SDGFLTPSKLVERAHGNGVKVLALTDHDTMSGIPEAVEAARRFGIKIIPGVEISTIFSNG 149

Query: 144 G-SESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHV 202
           G SESEEPVHILAYYSSCGP+K E+LE FL NIR+GRFLRAK+M+ KLN+LKLPLKW+HV
Sbjct: 150 GDSESEEPVHILAYYSSCGPAKIEKLEKFLENIREGRFLRAKNMVSKLNELKLPLKWDHV 209

Query: 203 AKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHR 262
           AKI GKGVAPGRLHVARA+VEAG+VENLKQAF+RYL+DGGPAYSTGSEP A  A+QLIH 
Sbjct: 210 AKITGKGVAPGRLHVARALVEAGYVENLKQAFSRYLFDGGPAYSTGSEPCAAEAIQLIHD 269

Query: 263 TGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLKLGGSDY 322
           TGG+AVLAHPWALKNP A+IR+LKD GLHGLEVYRSDG+L AY+DLAD YGLLKLGGSD+
Sbjct: 270 TGGMAVLAHPWALKNPVAVIRRLKDAGLHGLEVYRSDGRLAAYSDLADNYGLLKLGGSDF 329

Query: 323 HGRGGHGESELGSVKLPVLVLNDFLKVARPIWCGAIKEILESYADEPSDSNLSHITRYGR 382
           HGRGGH ESE+GSV LPVL ++DFLK ARP+WC AI++ILESY +EPS+SNL+ ITR+GR
Sbjct: 330 HGRGGHSESEVGSVNLPVLAMHDFLKAARPVWCSAIRDILESYVEEPSESNLAKITRFGR 389

Query: 383 GKMLKRNYPLNCGKGLVDECLSLWLTNEERQSAEFEAIKLKLSHVSINQ 431
            ++LK       G  L++ CL+LWLTNEE+Q+ EFEAI+LKLSH+SINQ
Sbjct: 390 TRVLKGGSSPGSGNDLIERCLTLWLTNEEKQNDEFEAIRLKLSHISINQ 438

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224059026|ref|XP_002299681.1| predicted protein [Populus trichocarpa] gi|222846939|gb|EEE84486.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356524846|ref|XP_003531039.1| PREDICTED: protein trpH-like [Glycine max] Back     alignment and taxonomy information
>gi|356512073|ref|XP_003524745.1| PREDICTED: protein trpH-like [Glycine max] Back     alignment and taxonomy information
>gi|297836026|ref|XP_002885895.1| PHP domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297331735|gb|EFH62154.1| PHP domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18397349|ref|NP_565360.1| Polymerase/histidinol phosphatase-like protein [Arabidopsis thaliana] gi|20197611|gb|AAD15431.2| expressed protein [Arabidopsis thaliana] gi|20197796|gb|AAM15252.1| expressed protein [Arabidopsis thaliana] gi|330251170|gb|AEC06264.1| Polymerase/histidinol phosphatase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|15450377|gb|AAK96482.1| At2g13860/F13J11.19 [Arabidopsis thaliana] gi|20466107|gb|AAM19975.1| At2g13860/F13J11.19 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|359485749|ref|XP_002264419.2| PREDICTED: protein trpH-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|296085663|emb|CBI29462.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|326497631|dbj|BAK05905.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query432
TAIR|locus:2043738434 AT2G13840 [Arabidopsis thalian 0.923 0.919 0.606 1.7e-130
UNIPROTKB|Q3Z644287 DET1610 "PHP domain N-terminal 0.638 0.961 0.319 1.3e-34
TIGR_CMR|DET_1610287 DET_1610 "PHP domain N-termina 0.638 0.961 0.319 1.3e-34
UNIPROTKB|Q3A9Z4278 CHY_2227 "PHP domain protein" 0.537 0.834 0.341 7.7e-32
TIGR_CMR|CHY_2227278 CHY_2227 "PHP domain protein" 0.537 0.834 0.341 7.7e-32
UNIPROTKB|Q8ECV6286 trpH "PHP family metal-depende 0.495 0.748 0.360 3.5e-27
TIGR_CMR|SO_3017286 SO_3017 "TrpH family protein" 0.495 0.748 0.360 3.5e-27
UNIPROTKB|Q74D71288 GSU1448 "Metal-dependent phosp 0.530 0.795 0.326 5.3e-24
TIGR_CMR|GSU_1448288 GSU_1448 "PHP domain protein" 0.530 0.795 0.326 5.3e-24
UNIPROTKB|Q60BV5277 MCA0359 "PHP domain protein" [ 0.537 0.837 0.321 8.7e-24
TAIR|locus:2043738 AT2G13840 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1280 (455.6 bits), Expect = 1.7e-130, P = 1.7e-130
 Identities = 245/404 (60%), Positives = 305/404 (75%)

Query:    29 MTAEQSLAFNSVTEWVYLDQXXXXXXXEDDFGVHQILNRA---VDNNVVFELHSHSNFSD 85
             MT EQS AF S+T+W+ L          DDF V+  +N         VVFELHSHSN SD
Sbjct:    22 MTTEQSEAFKSITDWLILGSSPSLSSSSDDFAVN--INSGSLRCGEKVVFELHSHSNRSD 79

Query:    86 GYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGS 145
             G+LSPSK+VERA+ NGVKVL+LTDHDTM+G+PEA+E  RRFG+KIIPG+EIST+F  R S
Sbjct:    80 GFLSPSKVVERAYNNGVKVLSLTDHDTMAGVPEAVEAGRRFGIKIIPGIEISTLFGLRDS 139

Query:   146 ESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMIXXXXXXXXXXXWEHVAKI 205
              SEEPVHILAYY + GP+ Y+ELE+FL  IRDGRF+R ++M+           WEHV +I
Sbjct:   140 GSEEPVHILAYYGTSGPALYDELEDFLVKIRDGRFVRGREMVLKLNKLKIPLKWEHVTRI 199

Query:   206 AGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGG 265
             AGK VAPGR+HVARA++EAG+VENL+QAF +YL+DGGPAY+TG+EP+AE AV+LI +TGG
Sbjct:   200 AGKDVAPGRMHVARALLEAGYVENLRQAFTKYLHDGGPAYATGTEPMAEEAVKLICKTGG 259

Query:   266 LAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLKLXXXXXXXX 325
             +AVLAHPWALKN   IIR+LKD GLHG+EVYRSDGKL  +++LADTY LLKL        
Sbjct:   260 VAVLAHPWALKNHVGIIRRLKDAGLHGVEVYRSDGKLEVFSELADTYNLLKLGGSDYHGK 319

Query:   326 XXXXESELGSVKLPVLVLNDFLKVARPIWCGAIKEILESYADEPSDSNLSHITRYGRGKM 385
                 ESELGSV LPV  L DFL V RPIWC AIK  + ++ D+PSDSNLS+I R+ + ++
Sbjct:   320 GGRNESELGSVNLPVTALQDFLNVGRPIWCEAIKATMRAFLDQPSDSNLSNILRFDKARI 379

Query:   386 LKRNYPLNCGKGLVDECLSLWLTNEERQSAEFEAIKLKLSHVSI 429
             LK N   +CGK L+D CL++WLT++ER S +FEA++LKLS V I
Sbjct:   380 LKGNSAWSCGKELMDRCLAIWLTSDERNSNDFEALRLKLSFVPI 423
GO:0003677 "DNA binding" evidence=IEA;ISS
GO:0003824 "catalytic activity" evidence=IEA
GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0006260 "DNA replication" evidence=IEA;ISS
UNIPROTKB|Q3Z644 DET1610 "PHP domain N-terminal region family protein" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|DET_1610 DET_1610 "PHP domain N-terminal region family protein" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
UNIPROTKB|Q3A9Z4 CHY_2227 "PHP domain protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_2227 CHY_2227 "PHP domain protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
UNIPROTKB|Q8ECV6 trpH "PHP family metal-dependent phosphoesterases TrpH" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|SO_3017 SO_3017 "TrpH family protein" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|Q74D71 GSU1448 "Metal-dependent phosphoesterase, PHP family" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_1448 GSU_1448 "PHP domain protein" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|Q60BV5 MCA0359 "PHP domain protein" [Methylococcus capsulatus str. Bath (taxid:243233)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pm.C_LG_I000518
hypothetical protein (408 aa)
(Populus trichocarpa)
Predicted Functional Partners:
CMS
SubName- Full=Putative chloroplast 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; EC [...] (230 aa)
•       0.531
fgenesh4_pg.C_scaffold_18770000001
Predicted protein (302 aa)
•       0.487
eugene3.139720002
Predicted protein (128 aa)
•       0.455
eugene3.00031274
aminoacyl-tRNA ligase (EC-6.1.1.2) (404 aa)
•       0.426

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query432
COG0613258 COG0613, COG0613, Predicted metal-dependent phosph 4e-42
cd07438155 cd07438, PHP_HisPPase_AMP, Polymerase and Histidin 9e-32
cd07438155 cd07438, PHP_HisPPase_AMP, Polymerase and Histidin 1e-18
smart0048167 smart00481, POLIIIAc, DNA polymerase alpha chain l 4e-18
cd07432129 cd07432, PHP_HisPPase, Polymerase and Histidinol P 2e-16
COG0587 1139 COG0587, DnaE, DNA polymerase III, alpha subunit [ 2e-14
pfam02811174 pfam02811, PHP, PHP domain 1e-13
PRK05672 1046 PRK05672, dnaE2, error-prone DNA polymerase; Valid 6e-13
PRK00448 1437 PRK00448, polC, DNA polymerase III PolC; Validated 2e-12
cd07435268 cd07435, PHP_PolIIIA_POLC, Polymerase and Histidin 1e-11
cd0730988 cd07309, PHP, Polymerase and Histidinol Phosphatas 5e-11
cd07431179 cd07431, PHP_PolIIIA, Polymerase and Histidinol Ph 6e-11
COG2176 1444 COG2176, PolC, DNA polymerase III, alpha subunit ( 1e-10
PRK06361212 PRK06361, PRK06361, hypothetical protein; Provisio 7e-10
TIGR01405 1213 TIGR01405, polC_Gram_pos, DNA polymerase III, alph 2e-09
COG1387237 COG1387, HIS2, Histidinol phosphatase and related 7e-08
cd07434260 cd07434, PHP_PolIIIA_DnaE2, Polymerase and Histidi 2e-07
cd12112235 cd12112, PHP_HisPPase_Chlorobi_like, Polymerase an 2e-07
cd12113283 cd12113, PHP_PolIIIA_DnaE3, Polymerase and Histidi 2e-06
PRK07374 1170 PRK07374, dnaE, DNA polymerase III subunit alpha; 7e-06
cd12111226 cd12111, PHP_HisPPase_Thermotoga_like, Polymerase 1e-05
PRK09532 874 PRK09532, PRK09532, DNA polymerase III subunit alp 3e-05
TIGR00594 1022 TIGR00594, polc, DNA-directed DNA polymerase III ( 7e-05
PRK06826 1151 PRK06826, dnaE, DNA polymerase III DnaE; Reviewed 7e-05
PRK05673 1135 PRK05673, dnaE, DNA polymerase III subunit alpha; 2e-04
cd07433277 cd07433, PHP_PolIIIA_DnaE1, Polymerase and Histidi 5e-04
PRK07135 973 PRK07135, dnaE, DNA polymerase III DnaE; Validated 7e-04
>gnl|CDD|223686 COG0613, COG0613, Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only] Back     alignment and domain information 
 Score =  149 bits (377), Expect = 4e-42
 Identities = 94/264 (35%), Positives = 125/264 (47%), Gaps = 17/264 (6%)

Query: 75  FELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIE-TARRFGMKIIPG 133
            +LH H+  SDG L+P ++VERA   GV VLA+TDHDT+ G+ EA      R G+ +IPG
Sbjct: 4   ADLHVHTTASDGGLTPREVVERAKAKGVDVLAITDHDTVRGLLEARRAAGLRLGITVIPG 63

Query: 134 VEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKL 193
           +EIST      +     +HIL           E L   LA  +  R  R +++  +L K 
Sbjct: 64  IEIST------TWGGHIIHILGLGI---DITDEPLVEGLARQQLYREERLEEIKERLGKA 114

Query: 194 KLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLA 253
            +P  +E   K+AG G    R H+AR  VE G+    +  F +YL  G P Y       +
Sbjct: 115 IIPHPFEGARKLAGLGAIT-RAHIARDAVEVGNASTRQGVFNKYLKRGAPKYVPPEWADS 173

Query: 254 EVAVQLIHRTGGLAVLAHPWALKNPA-AIIRKLKDVGLHGLEVYRSDGK---LVAYTDLA 309
           E  V  IH  GG AVLAHP         ++    D G  G+EV               LA
Sbjct: 174 EAHVGAIHGAGGTAVLAHPGRYDLSLKRLVEAFADHGGDGIEVIYGAISPNPREVLALLA 233

Query: 310 DTYGLLKLGGSDYHGRGG--HGES 331
             +GLL   GSD+H  G    GES
Sbjct: 234 KEFGLLASVGSDFHTPGDWIEGES 257

Length = 258
>gnl|CDD|213993 cd07438, PHP_HisPPase_AMP, Polymerase and Histidinol Phosphatase domain of Histidinol phosphate phosphatase (HisPPase) AMP bound Back     alignment and domain information
>gnl|CDD|213993 cd07438, PHP_HisPPase_AMP, Polymerase and Histidinol Phosphatase domain of Histidinol phosphate phosphatase (HisPPase) AMP bound Back     alignment and domain information
>gnl|CDD|197753 smart00481, POLIIIAc, DNA polymerase alpha chain like domain Back     alignment and domain information
>gnl|CDD|213987 cd07432, PHP_HisPPase, Polymerase and Histidinol Phosphatase domain of Histidinol phosphate phosphatase Back     alignment and domain information
>gnl|CDD|223660 COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|217238 pfam02811, PHP, PHP domain Back     alignment and domain information
>gnl|CDD|235553 PRK05672, dnaE2, error-prone DNA polymerase; Validated Back     alignment and domain information
>gnl|CDD|234767 PRK00448, polC, DNA polymerase III PolC; Validated Back     alignment and domain information
>gnl|CDD|213990 cd07435, PHP_PolIIIA_POLC, Polymerase and Histidinol Phosphatase domain of alpha-subunit of bacterial polymerase III at PolC gene Back     alignment and domain information
>gnl|CDD|213985 cd07309, PHP, Polymerase and Histidinol Phosphatase domain Back     alignment and domain information
>gnl|CDD|213986 cd07431, PHP_PolIIIA, Polymerase and Histidinol Phosphatase domain of alpha-subunit of bacterial polymerase III Back     alignment and domain information
>gnl|CDD|225087 COG2176, PolC, DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|180543 PRK06361, PRK06361, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|233397 TIGR01405, polC_Gram_pos, DNA polymerase III, alpha chain, Gram-positive type Back     alignment and domain information
>gnl|CDD|224305 COG1387, HIS2, Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>gnl|CDD|213989 cd07434, PHP_PolIIIA_DnaE2, Polymerase and Histidinol Phosphatase domain of alpha-subunit of bacterial polymerase III at DnaE2 gene Back     alignment and domain information
>gnl|CDD|213996 cd12112, PHP_HisPPase_Chlorobi_like, Polymerase and Histidinol Phosphatase domain of Chlorobi like Back     alignment and domain information
>gnl|CDD|213997 cd12113, PHP_PolIIIA_DnaE3, Polymerase and Histidinol Phosphatase domain of alpha-subunit of bacterial polymerase III DnaE3 Back     alignment and domain information
>gnl|CDD|168927 PRK07374, dnaE, DNA polymerase III subunit alpha; Validated Back     alignment and domain information
>gnl|CDD|213995 cd12111, PHP_HisPPase_Thermotoga_like, Polymerase and Histidinol Phosphatase domain of Thermotoga like Back     alignment and domain information
>gnl|CDD|181933 PRK09532, PRK09532, DNA polymerase III subunit alpha; Reviewed Back     alignment and domain information
>gnl|CDD|233039 TIGR00594, polc, DNA-directed DNA polymerase III (polc) Back     alignment and domain information
>gnl|CDD|235868 PRK06826, dnaE, DNA polymerase III DnaE; Reviewed Back     alignment and domain information
>gnl|CDD|235554 PRK05673, dnaE, DNA polymerase III subunit alpha; Validated Back     alignment and domain information
>gnl|CDD|213988 cd07433, PHP_PolIIIA_DnaE1, Polymerase and Histidinol Phosphatase domain of alpha-subunit of bacterial polymerase III DnaE1 Back     alignment and domain information
>gnl|CDD|235944 PRK07135, dnaE, DNA polymerase III DnaE; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 432
COG0613258 Predicted metal-dependent phosphoesterases (PHP fa 100.0
PRK09248246 putative hydrolase; Validated 99.8
PRK00448 1437 polC DNA polymerase III PolC; Validated 99.77
TIGR00375374 conserved hypothetical protein TIGR00375. The memb 99.68
smart0048167 POLIIIAc DNA polymerase alpha chain like domain. D 99.66
PF02811175 PHP: PHP domain; InterPro: IPR004013 The PHP (Poly 99.66
PRK07328269 histidinol-phosphatase; Provisional 99.66
PRK08392215 hypothetical protein; Provisional 99.65
PRK05672 1046 dnaE2 error-prone DNA polymerase; Validated 99.55
PRK08123270 histidinol-phosphatase; Reviewed 99.53
TIGR01856253 hisJ_fam histidinol phosphate phosphatase HisJ fam 99.53
PRK09532 874 DNA polymerase III subunit alpha; Reviewed 99.52
PRK00912237 ribonuclease P protein component 3; Provisional 99.5
PRK07945335 hypothetical protein; Provisional 99.49
PRK06361212 hypothetical protein; Provisional 99.48
PRK05588255 histidinol-phosphatase; Provisional 99.47
PRK07135 973 dnaE DNA polymerase III DnaE; Validated 99.45
PRK08609570 hypothetical protein; Provisional 99.43
COG1387237 HIS2 Histidinol phosphatase and related hydrolases 99.42
PRK05673 1135 dnaE DNA polymerase III subunit alpha; Validated 99.42
PRK06920 1107 dnaE DNA polymerase III DnaE; Reviewed 99.31
TIGR01405 1213 polC_Gram_pos DNA polymerase III, alpha chain, Gra 99.31
PRK07329246 hypothetical protein; Provisional 99.31
PRK06826 1151 dnaE DNA polymerase III DnaE; Reviewed 99.29
PRK07279 1034 dnaE DNA polymerase III DnaE; Reviewed 99.28
PRK05898 971 dnaE DNA polymerase III DnaE; Validated 99.27
COG1379403 PHP family phosphoesterase with a Zn ribbon [Gener 99.27
TIGR00594 1022 polc DNA-directed DNA polymerase III (polc). This 99.26
PRK07374 1170 dnaE DNA polymerase III subunit alpha; Validated 99.26
COG0587 1139 DnaE DNA polymerase III, alpha subunit [DNA replic 99.24
PRK06740331 histidinol-phosphatase; Validated 99.16
COG2176 1444 PolC DNA polymerase III, alpha subunit (gram-posit 98.99
COG4464254 CapC Capsular polysaccharide biosynthesis protein 98.88
PF1326356 PHP_C: PHP-associated; PDB: 2Z4G_B 2YXO_B 2YZ5_A 3 96.73
PF12228 592 DUF3604: Protein of unknown function (DUF3604); In 90.55
cd01292275 metallo-dependent_hydrolases Superfamily of metall 87.96
TIGR00010252 hydrolase, TatD family. Several genomes have multi 87.0
COG0084256 TatD Mg-dependent DNase [DNA replication, recombin 82.63
>COG0613 Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=3.1e-37  Score=301.54  Aligned_cols=246  Identities=37%  Similarity=0.522  Sum_probs=222.6

Q ss_pred             ceeEcceeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHH-HHHHhCCCeEeeEEEEEEeecCCCCCCCCc
Q 014031           72 NVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAI-ETARRFGMKIIPGVEISTIFCQRGSESEEP  150 (432)
Q Consensus        72 ~~~vDLH~HT~~SDG~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~-~~a~~~gi~vI~GiEis~~~~~~~~~~~~~  150 (432)
                      ||++||||||++|||.++|.+++++|++.|++++|||||||+.|+.++. .+....|+.+|||+|+++.+.      +..
T Consensus         1 ~~~~DLHvHSt~Sdg~~~p~~vv~~A~~~g~~vlAiTDHdt~~g~~~a~~~~~~~l~i~vipG~Ei~t~~~------~~~   74 (258)
T COG0613           1 WMKADLHVHTTASDGGLTPREVVERAKAKGVDVLAITDHDTVRGLLEARRAAGLRLGITVIPGIEISTTWG------GHI   74 (258)
T ss_pred             CcceeeeEecccCCCCCCHHHHHHHHHHcCCCEEEECCcccccccHHHHHHhhcCCCceeeccEEeecccC------CeE
Confidence            6899999999999999999999999999999999999999999999987 444567999999999999986      789


Q ss_pred             EEEEEEeccCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCChHHHHHHHHHcCccccH
Q 014031          151 VHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENL  230 (432)
Q Consensus       151 vHiLgYg~d~g~~~~~~L~~~l~~ir~~R~~r~~~mv~kL~~~g~~i~~eev~~~~g~~~~~gr~hia~aLv~~G~~~~~  230 (432)
                      +|+++|+.+.   ....+.+++.+.+..|.+|++.+.+++...+++..|+.+...++.+ .+.|+|++..+++.+++.+.
T Consensus        75 ih~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~h~~~~~~~~~~~~-~~~~~h~~~~~ve~~~~~~~  150 (258)
T COG0613          75 IHILGLGIDI---TDEPLVEGLARQQLYREERLEEIKERLGKAIIPHPFEGARKLAGLG-AITRAHIARDAVEVGNASTR  150 (258)
T ss_pred             EEEEeecccc---cchhhhhhhhhccccHHHHHHHHHHhCCccccCcchHHHHhcCCcc-cchhhhhhhhhhccccccch
Confidence            9999999864   2345888899999999999999999999999999999888877654 46799999999999999999


Q ss_pred             HHHHHHHhhCCCCcccCCCCCCHHHHHHHHHHcCCEEEEeCCCCCCCc-HHHHHHHHHcCccEEEEecCC---CcHHHHH
Q 014031          231 KQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNP-AAIIRKLKDVGLHGLEVYRSD---GKLVAYT  306 (432)
Q Consensus       231 ~~af~~yl~~~gp~yv~~~~~~~eeaI~~I~~aGGi~VLAHP~~~~~~-~~li~~L~~~GldGIEv~~~~---~~~~~~~  306 (432)
                      .+.|.+|+..++++|+++.+.+.++.|..++.+||+.|+|||.++..+ ..++..+.+.|.+|+|+++..   ++...+.
T Consensus       151 ~~~fn~~~~~~~~~~~~~~~~~~~~~i~~~~ga~g~~v~ahp~r~~~~~~~lv~~~~~~~~~~ie~~~~~~~~~~~~~~~  230 (258)
T COG0613         151 QGVFNKYLKRGAPKYVPPEWADSEAHVGAIHGAGGTAVLAHPGRYDLSLKRLVEAFADHGGDGIEVIYGAISPNPREVLA  230 (258)
T ss_pred             HHHHHHHHhccCcccCcccccCHHHHHHHHhhceeEEEeccccccccchhHHHHHHHhcCCCceEEecccCCcchHHHHH
Confidence            999999999999999999999999999999999999999999988654 678889999999999999876   3567788


Q ss_pred             HHHHHcCCeeEeCCCCCCCCC
Q 014031          307 DLADTYGLLKLGGSDYHGRGG  327 (432)
Q Consensus       307 ~lA~~~gLl~tgGSDfHg~~~  327 (432)
                      .+++.++++.|+|||||.++.
T Consensus       231 ~~~k~~~~l~s~gs~fh~~~~  251 (258)
T COG0613         231 LLAKEFGLLASVGSDFHTPGD  251 (258)
T ss_pred             HHHHHhhhhhcccccccCCCc
Confidence            899999999999999999864

>PRK09248 putative hydrolase; Validated Back     alignment and domain information
>PRK00448 polC DNA polymerase III PolC; Validated Back     alignment and domain information
>TIGR00375 conserved hypothetical protein TIGR00375 Back     alignment and domain information
>smart00481 POLIIIAc DNA polymerase alpha chain like domain Back     alignment and domain information
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain Back     alignment and domain information
>PRK07328 histidinol-phosphatase; Provisional Back     alignment and domain information
>PRK08392 hypothetical protein; Provisional Back     alignment and domain information
>PRK05672 dnaE2 error-prone DNA polymerase; Validated Back     alignment and domain information
>PRK08123 histidinol-phosphatase; Reviewed Back     alignment and domain information
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family Back     alignment and domain information
>PRK09532 DNA polymerase III subunit alpha; Reviewed Back     alignment and domain information
>PRK00912 ribonuclease P protein component 3; Provisional Back     alignment and domain information
>PRK07945 hypothetical protein; Provisional Back     alignment and domain information
>PRK06361 hypothetical protein; Provisional Back     alignment and domain information
>PRK05588 histidinol-phosphatase; Provisional Back     alignment and domain information
>PRK07135 dnaE DNA polymerase III DnaE; Validated Back     alignment and domain information
>PRK08609 hypothetical protein; Provisional Back     alignment and domain information
>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>PRK05673 dnaE DNA polymerase III subunit alpha; Validated Back     alignment and domain information
>PRK06920 dnaE DNA polymerase III DnaE; Reviewed Back     alignment and domain information
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type Back     alignment and domain information
>PRK07329 hypothetical protein; Provisional Back     alignment and domain information
>PRK06826 dnaE DNA polymerase III DnaE; Reviewed Back     alignment and domain information
>PRK07279 dnaE DNA polymerase III DnaE; Reviewed Back     alignment and domain information
>PRK05898 dnaE DNA polymerase III DnaE; Validated Back     alignment and domain information
>COG1379 PHP family phosphoesterase with a Zn ribbon [General function prediction only] Back     alignment and domain information
>TIGR00594 polc DNA-directed DNA polymerase III (polc) Back     alignment and domain information
>PRK07374 dnaE DNA polymerase III subunit alpha; Validated Back     alignment and domain information
>COG0587 DnaE DNA polymerase III, alpha subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK06740 histidinol-phosphatase; Validated Back     alignment and domain information
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair] Back     alignment and domain information
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF13263 PHP_C: PHP-associated; PDB: 2Z4G_B 2YXO_B 2YZ5_A 3DCP_B Back     alignment and domain information
>PF12228 DUF3604: Protein of unknown function (DUF3604); InterPro: IPR022028 This family of proteins is found in bacteria Back     alignment and domain information
>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site Back     alignment and domain information
>TIGR00010 hydrolase, TatD family Back     alignment and domain information
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query432
3e0f_A301 Crystal Structure Of A Putative Metal-Dependent Pho 8e-17
2yb1_A292 Structure Of An Amidohydrolase From Chromobacterium 3e-16
3f2b_A 1041 Dna Polymerase Polc From Geobacillus Kaustophilus C 1e-05
>pdb|3E0F|A Chain A, Crystal Structure Of A Putative Metal-Dependent Phosphoesterase (Bad_1165) From Bifidobacterium Adolescentis Atcc 15703 At 2.40 A Resolution Length = 301 Back     alignment and structure 
Iteration: 1

 Score = 84.7 bits (208), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 104/231 (45%), Gaps = 21/231 (9%)
Query: 75  FELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGV 134
           +++H H+ FSDG  +P  LVE+A   G+  +A+ DHDT +G  EA E +   G+ ++ G 
Sbjct: 15  WDIHCHTVFSDGTETPRTLVEQARKLGLHGVAIADHDTTAGWDEATEASEEIGLPLLLGT 74
Query: 135 EISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMIXXXXXXX 194
           EI+ +      + +  VH LA+     PS  E + +  AN R  R  R K  +       
Sbjct: 75  EITAV------DEDVSVHXLAFQYD--PSN-EHISSXFANTRAARLRRTKRXVERLSQDF 125
Query: 195 XXXXWEHVAKIA-GKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLA 253
                + +A++  G+    GR H+A A+V AG  E    AFA  +      Y     P  
Sbjct: 126 PITWDDVLAQVKEGERTTIGRPHIADALVAAGVYETRSDAFADAVSAKSKYYIPTPSPST 185
Query: 254 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDV--------GLHGLEVY 296
              +  +   GG+ V AH     +P    R L D         GL GLEV+
Sbjct: 186 HEVIAAVKGAGGVVVAAH---AGDPQRNRRLLSDEQLDAXIADGLDGLEVW 233
>pdb|2YB1|A Chain A, Structure Of An Amidohydrolase From Chromobacterium Violaceum (Efi Target Efi-500202) With Bound Mn, Amp And Phosphate. Length = 292 Back     alignment and structure
>pdb|3F2B|A Chain A, Dna Polymerase Polc From Geobacillus Kaustophilus Complex With Dna, Dgtp, Mg And Zn Length = 1041 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query432
2yb1_A292 Amidohydrolase; HET: AMP; 1.90A {Chromobacterium v 1e-98
3o0f_A301 Putative metal-dependent phosphoesterase; structur 3e-94
2anu_A255 Hypothetical protein TM0559; predicted metal-depen 3e-13
3e38_A343 Two-domain protein containing predicted PHP-like d 6e-13
2hnh_A 910 DNA polymerase III alpha subunit; DNA replication, 1e-07
3f2b_A 1041 DNA-directed DNA polymerase III alpha chain; DNA p 6e-07
1m65_A245 Hypothetical protein YCDX; structural genomics, be 2e-06
2hpi_A 1220 DNA polymerase III alpha subunit; POL-beta-like nu 4e-06
3b0x_A575 DNA polymerase beta family (X family); structural 2e-04
2yxo_A267 Histidinol phosphatase; metal-dependent, hydrolase 6e-04
>2yb1_A Amidohydrolase; HET: AMP; 1.90A {Chromobacterium violaceum} PDB: 2yb4_A Length = 292 Back     alignment and structure
 Score =  296 bits (759), Expect = 1e-98
 Identities = 90/303 (29%), Positives = 136/303 (44%), Gaps = 29/303 (9%)

Query: 77  LHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEI 136
           LH HS  SDG L+P+++++RA      +LALTDHD   G+ EA   A R G+  + GVE+
Sbjct: 6   LHFHSRTSDGALTPTEVIDRAAARAPALLALTDHDCTGGLAEAAAAAARRGIPFLNGVEV 65

Query: 137 STIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLP 196
           S  + +        VHI+             L   L +IR+GR  RA+ M   L    + 
Sbjct: 66  SVSWGRHT------VHIVGLGIDP---AEPALAAGLKSIREGRLERARQMGASLEAAGIA 116

Query: 197 LKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVA 256
             ++   +         R H AR +V++G V++++  F +YL  G P Y +      E A
Sbjct: 117 GCFDGAMRWCDNPEMISRTHFARHLVDSGAVKDMRTVFRKYLTPGKPGYVSHQWASLEDA 176

Query: 257 VQLIHRTGGLAVLAHPWALKNPA----AIIRKLKDVGLHGLEVYRSD---GKLVAYTDLA 309
           V  I   GG+AV+AHP            +I   +  G  G+EV         +  +   A
Sbjct: 177 VGWIVGAGGMAVIAHPGRYDMGRTLIERLILDFQAAGGQGIEVASGSHSLDDMHKFALHA 236

Query: 310 DTYGLLKLGGSDYHGRGGHGESELGSVKLPVLVLNDFLKVARPIWCGAIKEILESYADEP 369
           D +GL    GSD+H   G G  ++G  +       D   + RPIW       LE+    P
Sbjct: 237 DRHGLYASSGSDFHAP-GEGGRDVGHTE-------DLPPICRPIW-----RELEARILRP 283

Query: 370 SDS 372
           +D+
Sbjct: 284 ADA 286
>3o0f_A Putative metal-dependent phosphoesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: AMP; 1.94A {Bifidobacterium adolescentis} PDB: 3e0f_A* Length = 301 Back     alignment and structure
>2anu_A Hypothetical protein TM0559; predicted metal-dependent phosphoesterase (PHP famil structural genomics, joint center for structural genomics; 2.40A {Thermotoga maritima} SCOP: c.6.3.1 Length = 255 Back     alignment and structure
>3e38_A Two-domain protein containing predicted PHP-like dependent phosphoesterase; structural genomics; 2.20A {Bacteroides vulgatus atcc 8482} Length = 343 Back     alignment and structure
>2hnh_A DNA polymerase III alpha subunit; DNA replication, nucleotidyltransferase, beta, PHP, transferase; HET: DNA; 2.30A {Escherichia coli} PDB: 2hqa_A* Length = 910 Back     alignment and structure
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A* Length = 1041 Back     alignment and structure
>1m65_A Hypothetical protein YCDX; structural genomics, beta-alpha-barrel, metallo-enzyme, STRU function project, S2F, unknown function; 1.57A {Escherichia coli} SCOP: c.6.3.1 PDB: 1m68_A 1pb0_A Length = 245 Back     alignment and structure
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A* Length = 1220 Back     alignment and structure
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A* Length = 575 Back     alignment and structure
>2yxo_A Histidinol phosphatase; metal-dependent, hydrolase; 1.60A {Thermus thermophilus} PDB: 2yz5_A 2z4g_A Length = 267 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query432
3o0f_A301 Putative metal-dependent phosphoesterase; structur 100.0
2yb1_A292 Amidohydrolase; HET: AMP; 1.90A {Chromobacterium v 100.0
3e38_A343 Two-domain protein containing predicted PHP-like d 99.95
2yxo_A267 Histidinol phosphatase; metal-dependent, hydrolase 99.9
1m65_A245 Hypothetical protein YCDX; structural genomics, be 99.88
2anu_A255 Hypothetical protein TM0559; predicted metal-depen 99.88
3qy7_A262 Tyrosine-protein phosphatase YWQE; TIM barrel, pol 99.76
2wje_A247 CPS4B, tyrosine-protein phosphatase CPSB; capsule 99.75
2w9m_A578 Polymerase X; SAXS, DNA repair, DNA polymerase, DN 99.71
2hnh_A 910 DNA polymerase III alpha subunit; DNA replication, 99.71
3b0x_A575 DNA polymerase beta family (X family); structural 99.62
2hpi_A 1220 DNA polymerase III alpha subunit; POL-beta-like nu 99.61
3dcp_A283 Histidinol-phosphatase; HISK, histidine biosynthes 99.51
3f2b_A 1041 DNA-directed DNA polymerase III alpha chain; DNA p 99.43
1v77_A212 PH1877P, hypothetical protein PH1877; RNAse P prot 98.77
2y1h_A272 Putative deoxyribonuclease tatdn3; hydrolase; 2.50 91.99
1zzm_A259 Putative deoxyribonuclease YJJV; hydrolaze, zinc, 88.29
3rcm_A287 TATD family hydrolase; HET: CIT; 2.05A {Pseudomona 85.27
3gg7_A254 Uncharacterized metalloprotein; structural genomic 84.63
1xwy_A264 DNAse TATD, deoxyribonuclease TATD; TIM barrael, z 83.89
2gzx_A265 Putative TATD related DNAse; deoxyribonuclease, NE 82.3
1yix_A265 Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW 81.86
2xio_A301 Putative deoxyribonuclease tatdn1; hydrolase; 1.19 81.36
>3o0f_A Putative metal-dependent phosphoesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: AMP; 1.94A {Bifidobacterium adolescentis} PDB: 3e0f_A* Back     alignment and structure
Probab=100.00  E-value=1.3e-59  Score=466.55  Aligned_cols=267  Identities=30%  Similarity=0.471  Sum_probs=244.6

Q ss_pred             CCceeEcceeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCeEeeEEEEEEeecCCCCCCCC
Q 014031           70 DNNVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEE  149 (432)
Q Consensus        70 ~~~~~vDLH~HT~~SDG~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vI~GiEis~~~~~~~~~~~~  149 (432)
                      .|.|++|||+||.||||.++|++++++|++.|+++|||||||++.|+.++.+++++.||.+|+|+||++.+.      +.
T Consensus        10 ~m~~~~DLH~Hs~~SDG~~~~~elv~~A~~~Gl~~iaiTDH~~~~g~~~~~~~~~~~gi~~i~GvEis~~~~------~~   83 (301)
T 3o0f_A           10 PPAQGWDIHCHTVFSDGTETPRTLVEQARKLGLHGVAIADHDTTAGWDEATEASEEIGLPLLLGTEITAVDE------DV   83 (301)
T ss_dssp             CCSSSEEEEECCTTTTCSSCHHHHHHHHHHTTCSEEEECCBTCCTTHHHHHHHHHHHTCCEEEEEEEEEEET------TE
T ss_pred             cccceEEeeECCCCCCCCCCHHHHHHHHHHcCCCEEEEcCCCccccHHHHHHHHHhcCCEEEEEEEEEEEeC------Cc
Confidence            567899999999999999999999999999999999999999999999999999999999999999999985      57


Q ss_pred             cEEEEEEeccCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCC--CCCChHHHHHHHHHcCcc
Q 014031          150 PVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKG--VAPGRLHVARAMVEAGHV  227 (432)
Q Consensus       150 ~vHiLgYg~d~g~~~~~~L~~~l~~ir~~R~~r~~~mv~kL~~~g~~i~~eev~~~~g~~--~~~gr~hia~aLv~~G~~  227 (432)
                      .+|||||+++.   ..+.|+++++.+|+.|.+|+++|+++|++. ++++||++.+.++.+  ..+||||||++|+++||+
T Consensus        84 ~vHiL~~~~d~---~~~~l~~~l~~~~~~R~~R~~~i~~~L~~~-~~i~~e~v~~~a~~~~~~~igR~HiA~~Lv~~G~~  159 (301)
T 3o0f_A           84 SVHMLAFQYDP---SNEHISSMFANTRAARLRRTKRMVERLSQD-FPITWDDVLAQVKEGERTTIGRPHIADALVAAGVY  159 (301)
T ss_dssp             EEEEEEESCCT---TCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SSCCHHHHHTTCTTGGGSCCCHHHHHHHHHHTTSC
T ss_pred             eEEEEEEcCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHhcCCCCCCcCHHHHHHHHHHcCCC
Confidence            89999999875   357899999999999999999999999999 999999998876532  469999999999999999


Q ss_pred             ccHHHHHHHHhhCCCCcccCCCCCCHHHHHHHHHHcCCEEEEeCCCCCC-----CcHHHHHHHHHcCccEEEEecCCC--
Q 014031          228 ENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALK-----NPAAIIRKLKDVGLHGLEVYRSDG--  300 (432)
Q Consensus       228 ~~~~~af~~yl~~~gp~yv~~~~~~~eeaI~~I~~aGGi~VLAHP~~~~-----~~~~li~~L~~~GldGIEv~~~~~--  300 (432)
                      .+..++|++||++++|+||+..+++++|+|++|+++||++|||||+++.     ...+++.+|++.|++||||+++.+  
T Consensus       160 ~~~~~aF~~~l~~g~~~yV~~~~~~~~eaI~~I~~aGGvaVLAHP~r~~~~r~~~~~~~l~~l~~~GldgIEv~~~~~~~  239 (301)
T 3o0f_A          160 ETRSDAFADAVSAKSKYYIPTPSPSTHEVIAAVKGAGGVVVAAHAGDPQRNRRLLSDEQLDAMIADGLDGLEVWHRGNPP  239 (301)
T ss_dssp             SSHHHHHTTTTSTTSTTCCCCCCCBHHHHHHHHHHTTCEEEECSTTCTTTCSSCCCHHHHHHHHHHTCCEEEEESTTSCH
T ss_pred             CCHHHHHHHHHcCCCccccCccCCCHHHHHHHHHHCCCEEEecChhhhccccccCcHHHHHHHHHCCCCEEEEeCCCCCH
Confidence            9999999999999999999999999999999999999999999997653     346789999999999999999875  


Q ss_pred             -cHHHHHHHHHHcCCeeEeCCCCCCCCCCCCCCccccccChhhHHHhhh
Q 014031          301 -KLVAYTDLADTYGLLKLGGSDYHGRGGHGESELGSVKLPVLVLNDFLK  348 (432)
Q Consensus       301 -~~~~~~~lA~~~gLl~tgGSDfHg~~~~~~~~lG~~~~p~~~~~~~~~  348 (432)
                       +.+.+.++|++++|++|||||||++.+  +..||.+.+|...++.+.+
T Consensus       240 ~~~~~~~~lA~~~gL~~tgGSD~Hg~~~--~~~lG~~~~~~~~~~~l~~  286 (301)
T 3o0f_A          240 EQRERLLTIAARHDLLVTGGSDWHGKGK--PNGLGENLTDDDTVREILC  286 (301)
T ss_dssp             HHHHHHHHHHHHHTCEEEECCCBCGGGS--SCCTTSSCBCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCceEEEcCCCCCCC--CCcCCCcCCCHHHHHHHHH
Confidence             467889999999999999999999754  4689999999877776654
>2yb1_A Amidohydrolase; HET: AMP; 1.90A {Chromobacterium violaceum} PDB: 2yb4_A Back     alignment and structure
>3e38_A Two-domain protein containing predicted PHP-like dependent phosphoesterase; structural genomics; 2.20A {Bacteroides vulgatus atcc 8482} Back     alignment and structure
>2yxo_A Histidinol phosphatase; metal-dependent, hydrolase; 1.60A {Thermus thermophilus} PDB: 2yz5_A 2z4g_A Back     alignment and structure
>1m65_A Hypothetical protein YCDX; structural genomics, beta-alpha-barrel, metallo-enzyme, STRU function project, S2F, unknown function; 1.57A {Escherichia coli} SCOP: c.6.3.1 PDB: 1m68_A 1pb0_A Back     alignment and structure
>2anu_A Hypothetical protein TM0559; predicted metal-dependent phosphoesterase (PHP famil structural genomics, joint center for structural genomics; 2.40A {Thermotoga maritima} SCOP: c.6.3.1 Back     alignment and structure
>3qy7_A Tyrosine-protein phosphatase YWQE; TIM barrel, polymerase and histindinol phosphatase(PHP)-like phosphatase, hydrolase; 1.62A {Bacillus subtilis} PDB: 3qy6_A Back     alignment and structure
>2wje_A CPS4B, tyrosine-protein phosphatase CPSB; capsule biogenesis/degradation, manganese, hydrolase, exopolysaccharide synthesis; 1.90A {Streptococcus pneumoniae} PDB: 2wjd_A 2wjf_A 3qy8_A Back     alignment and structure
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans} Back     alignment and structure
>2hnh_A DNA polymerase III alpha subunit; DNA replication, nucleotidyltransferase, beta, PHP, transferase; HET: DNA; 2.30A {Escherichia coli} PDB: 2hqa_A* Back     alignment and structure
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A* Back     alignment and structure
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A* Back     alignment and structure
>3dcp_A Histidinol-phosphatase; HISK, histidine biosynthesis, NESG, LMR141, structural genomics, PSI-2, protein structure initiative; 2.10A {Listeria monocytogenes str} Back     alignment and structure
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A* Back     alignment and structure
>1v77_A PH1877P, hypothetical protein PH1877; RNAse P protein, TIM-barrel, RNA binding protein; 1.80A {Pyrococcus horikoshii} SCOP: c.6.3.2 PDB: 2czv_A* Back     alignment and structure
>2y1h_A Putative deoxyribonuclease tatdn3; hydrolase; 2.50A {Homo sapiens} Back     alignment and structure
>1zzm_A Putative deoxyribonuclease YJJV; hydrolaze, zinc, PEG, structural genomics, PSI; HET: P33; 1.80A {Escherichia coli} SCOP: c.1.9.12 Back     alignment and structure
>3rcm_A TATD family hydrolase; HET: CIT; 2.05A {Pseudomonas putida} Back     alignment and structure
>3gg7_A Uncharacterized metalloprotein; structural genomics, unknown function, plasmid, PSI-2, protein structure initiative; 1.50A {Deinococcus radiodurans} SCOP: c.1.9.0 Back     alignment and structure
>1xwy_A DNAse TATD, deoxyribonuclease TATD; TIM barrael, zinc ION, structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.1.9.12 Back     alignment and structure
>2gzx_A Putative TATD related DNAse; deoxyribonuclease, NESG, ZR237, structural GENO PSI, protein structure initiative; 2.20A {Staphylococcus aureus subsp} Back     alignment and structure
>1yix_A Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW YORK SGX center for structural genomics, nysgxrc; 1.90A {Escherichia coli} SCOP: c.1.9.12 Back     alignment and structure
>2xio_A Putative deoxyribonuclease tatdn1; hydrolase; 1.19A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 432
d2anua1229 c.6.3.1 (A:5-233) Hypothetical protein TM0559 {The 4e-12
d1m65a_244 c.6.3.1 (A:) Hypothetical protein YcdX {Escherichi 6e-10
>d2anua1 c.6.3.1 (A:5-233) Hypothetical protein TM0559 {Thermotoga maritima [TaxId: 2336]} Length = 229 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: PHP domain-like
family: PHP domain
domain: Hypothetical protein TM0559
species: Thermotoga maritima [TaxId: 2336]

 Score = 63.6 bits (153), Expect = 4e-12
 Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 1/86 (1%)

Query: 76  ELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVE 135
           + H H+N SDG+L   ++V+    +GV V+++TDH       E  +      +  I   +
Sbjct: 7   DFHVHTNMSDGHLPLGEVVDLFGKHGVDVVSITDHIVDRRTLEQRKRNGE-PLGAITEDK 65

Query: 136 ISTIFCQRGSESEEPVHILAYYSSCG 161
                 +   E +            G
Sbjct: 66  FQDYLKRLWREQKRAWEEYGMILIPG 91
>d1m65a_ c.6.3.1 (A:) Hypothetical protein YcdX {Escherichia coli [TaxId: 562]} Length = 244 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query432
d2anua1229 Hypothetical protein TM0559 {Thermotoga maritima [ 99.89
d1m65a_244 Hypothetical protein YcdX {Escherichia coli [TaxId 99.76
d1v77a_202 Ribonuclease P protein component 3, Rnp3 {Pyrococc 90.37
d1zzma1259 Putative deoxyribonuclease YjjV {Escherichia coli 84.77
>d2anua1 c.6.3.1 (A:5-233) Hypothetical protein TM0559 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: PHP domain-like
family: PHP domain
domain: Hypothetical protein TM0559
species: Thermotoga maritima [TaxId: 2336]

Probab=99.89  E-value=2.2e-23  Score=192.00  Aligned_cols=165  Identities=25%  Similarity=0.297  Sum_probs=122.9

Q ss_pred             CceeEcceeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHH---------------------------HHH
Q 014031           71 NNVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAI---------------------------ETA  123 (432)
Q Consensus        71 ~~~~vDLH~HT~~SDG~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~---------------------------~~a  123 (432)
                      .|+++|||+||.||||..||+++++.|++.|+++||||||+++.+...+.                           ...
T Consensus         2 ~W~~aDlH~HT~~SDg~~t~~e~~~~A~~~Gld~iaiTDH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (229)
T d2anua1           2 EWLLCDFHVHTNMSDGHLPLGEVVDLFGKHGVDVVSITDHIVDRRTLEQRKRNGEPLGAITEDKFQDYLKRLWREQKRAW   81 (229)
T ss_dssp             EEEEEEEEECCTTTTCSSCHHHHHHHHHHTTCSEEEEEEEEECHHHHHHHHHTTCCCCSCCSTTHHHHHHHHHHHHHHHH
T ss_pred             CceeeecccCcCccCCCCCHHHHHHHHHHcCCCEEEEeCCCCccchhhhhhccccccccccchhhHHHHHHHHHHHHHHH
Confidence            49999999999999999999999999999999999999998875443222                           233


Q ss_pred             HhCCCeEeeEEEEEEeecCCCCCCCCcEEEEEEeccCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCCHHHHH
Q 014031          124 RRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVA  203 (432)
Q Consensus       124 ~~~gi~vI~GiEis~~~~~~~~~~~~~vHiLgYg~d~g~~~~~~L~~~l~~ir~~R~~r~~~mv~kL~~~g~~i~~eev~  203 (432)
                      ...++.+++|+|.....        ...++++++...                                           
T Consensus        82 ~~~~~~~~~g~e~~~~~--------~~~~~~~~~~~~-------------------------------------------  110 (229)
T d2anua1          82 EEYGMILIPGVEITNNT--------DLYHIVAVDVKE-------------------------------------------  110 (229)
T ss_dssp             HHHSCEEEEEEEEEETT--------TTEEEEEESCCS-------------------------------------------
T ss_pred             hhcCeeeeccceecccc--------cceeEEecCCcc-------------------------------------------
Confidence            45689999999998753        456777775421                                           


Q ss_pred             HHhCCCCCCChHHHHHHHHHcCccccHHHHHHHHhhCCCCcccCCCCCCHHHHHHHHHHcCCEEEEeCCCCCCCcHH---
Q 014031          204 KIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAA---  280 (432)
Q Consensus       204 ~~~g~~~~~gr~hia~aLv~~G~~~~~~~af~~yl~~~gp~yv~~~~~~~eeaI~~I~~aGGi~VLAHP~~~~~~~~---  280 (432)
                                                               |. ....+.+++++.+++.||++|+|||++......   
T Consensus       111 -----------------------------------------~~-~~~~~~~~~~~~~~~~g~~~i~aHp~~~~~~~~~~~  148 (229)
T d2anua1         111 -----------------------------------------YV-DPSLPVEEIVEKLKEQNALVIAAHPDRKKQDEEHLS  148 (229)
T ss_dssp             -----------------------------------------CC-CTTSCHHHHHHHHHHTTCEEEECCCCTTC-----CC
T ss_pred             -----------------------------------------cc-CcccchHHHHHHHHhCCCeEEcccccccccchhhhh
Confidence                                                     00 012366799999999999999999986542110   


Q ss_pred             -HHH---HHHHcCccEEEEecCCCcHHHHHHHHHHcCCeeEeCCCCCCCCCCCCCCccccc
Q 014031          281 -IIR---KLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLKLGGSDYHGRGGHGESELGSVK  337 (432)
Q Consensus       281 -li~---~L~~~GldGIEv~~~~~~~~~~~~lA~~~gLl~tgGSDfHg~~~~~~~~lG~~~  337 (432)
                       ...   ......++|+|++++..    +.++|+++++.+++|||+|.+.     .+|...
T Consensus       149 ~~~~~~~~~~~~~~~~iE~~~~~~----~~~~~~~~~l~~v~~SDaH~~~-----~~G~~~  200 (229)
T d2anua1         149 WYLWANMERFKDTFDAWEIANRDD----LFNSVGVKKYRYVANSDFHELW-----HVYSWK  200 (229)
T ss_dssp             CHHHHSTTTTTTTCSEEEEEETTE----ECHHHHHTTCCEEEECCBCSGG-----GGSSEE
T ss_pred             hhhHhHHHHHhccCcEEEeccHHH----HHHHHHHcCCCEEeeCCCCCcc-----ccCCeE
Confidence             111   12234689999998753    3567889999999999999863     577653
>d1m65a_ c.6.3.1 (A:) Hypothetical protein YcdX {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1v77a_ c.6.3.2 (A:) Ribonuclease P protein component 3, Rnp3 {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1zzma1 c.1.9.12 (A:1-259) Putative deoxyribonuclease YjjV {Escherichia coli [TaxId: 562]} Back     information, alignment and structure